Query 003613
Match_columns 807
No_of_seqs 395 out of 2419
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 1E-171 3E-176 1486.4 65.6 794 1-807 1-802 (894)
2 PLN02361 alpha-amylase 100.0 1.6E-54 3.5E-59 483.0 26.6 295 508-807 11-309 (401)
3 PLN00196 alpha-amylase; Provis 100.0 4.2E-54 9.1E-59 484.4 26.5 299 507-806 23-334 (428)
4 PRK10785 maltodextrin glucosid 100.0 3.7E-48 7.9E-53 454.5 19.5 294 393-708 47-376 (598)
5 PRK09441 cytoplasmic alpha-amy 100.0 2.3E-45 5E-50 421.5 27.4 268 508-793 3-336 (479)
6 PRK09505 malS alpha-amylase; R 100.0 3E-43 6.6E-48 414.0 22.3 284 470-793 190-572 (683)
7 TIGR02456 treS_nterm trehalose 100.0 8.9E-40 1.9E-44 380.2 23.2 270 504-792 5-312 (539)
8 TIGR02403 trehalose_treC alpha 100.0 1.5E-39 3.2E-44 378.3 21.1 274 504-795 4-327 (543)
9 PF00128 Alpha-amylase: Alpha 100.0 6.7E-40 1.5E-44 349.6 15.6 253 524-792 1-276 (316)
10 PRK10933 trehalose-6-phosphate 100.0 2.5E-38 5.3E-43 368.0 21.2 184 523-708 29-255 (551)
11 PLN02784 alpha-amylase 100.0 3.2E-35 6.9E-40 344.6 15.4 163 47-216 229-394 (894)
12 TIGR02402 trehalose_TreZ malto 100.0 2.7E-34 5.8E-39 333.7 22.5 177 502-708 91-284 (542)
13 TIGR02100 glgX_debranch glycog 100.0 5.4E-34 1.2E-38 338.0 23.0 262 502-791 153-453 (688)
14 PRK14510 putative bifunctional 100.0 2.1E-33 4.5E-38 349.4 25.1 389 345-792 9-456 (1221)
15 TIGR02104 pulA_typeI pullulana 100.0 1E-33 2.2E-38 333.4 20.2 264 503-791 126-442 (605)
16 PRK03705 glycogen debranching 100.0 5.3E-33 1.1E-37 327.5 22.7 261 502-791 148-447 (658)
17 PRK13840 sucrose phosphorylase 100.0 3.9E-33 8.5E-38 316.8 19.4 250 508-791 3-295 (495)
18 TIGR02102 pullulan_Gpos pullul 100.0 7E-33 1.5E-37 337.8 22.4 265 502-791 449-763 (1111)
19 PRK12313 glycogen branching en 100.0 1.5E-32 3.3E-37 325.1 23.1 189 503-708 146-365 (633)
20 TIGR01515 branching_enzym alph 100.0 7E-33 1.5E-37 326.4 19.6 217 504-755 138-385 (613)
21 COG0366 AmyA Glycosidases [Car 100.0 2.3E-33 5.1E-38 321.4 13.6 185 470-686 1-205 (505)
22 PRK05402 glycogen branching en 100.0 1E-31 2.2E-36 322.1 23.1 189 503-707 240-460 (726)
23 TIGR03852 sucrose_gtfA sucrose 100.0 3.1E-32 6.7E-37 307.9 15.6 244 509-789 2-290 (470)
24 KOG0471 Alpha-amylase [Carbohy 100.0 4.6E-31 1E-35 306.3 14.4 209 502-712 15-245 (545)
25 PRK12568 glycogen branching en 100.0 6.7E-30 1.4E-34 300.9 23.9 258 502-790 244-532 (730)
26 PRK14706 glycogen branching en 100.0 6.7E-30 1.5E-34 300.7 22.8 253 504-791 144-428 (639)
27 PLN02960 alpha-amylase 100.0 3.5E-29 7.7E-34 295.2 24.3 163 503-683 394-560 (897)
28 TIGR02103 pullul_strch alpha-1 100.0 1.9E-29 4.1E-34 302.8 18.2 194 502-708 250-529 (898)
29 PLN02447 1,4-alpha-glucan-bran 100.0 4.3E-28 9.3E-33 286.2 22.6 253 504-791 229-518 (758)
30 PRK14705 glycogen branching en 100.0 2.9E-28 6.2E-33 299.2 20.9 185 503-708 746-961 (1224)
31 TIGR02455 TreS_stutzeri trehal 99.9 2.3E-27 4.9E-32 271.3 18.7 240 530-790 77-406 (688)
32 PLN02877 alpha-amylase/limit d 99.9 4E-27 8.6E-32 282.3 20.8 193 502-708 337-600 (970)
33 COG1523 PulA Type II secretory 99.9 3E-27 6.5E-32 277.0 11.5 176 497-687 164-367 (697)
34 COG0296 GlgB 1,4-alpha-glucan 99.9 7.8E-25 1.7E-29 253.1 20.5 164 503-684 143-308 (628)
35 TIGR02401 trehalose_TreY malto 99.9 8E-25 1.7E-29 259.7 20.6 186 523-708 12-287 (825)
36 smart00642 Aamy Alpha-amylase 99.9 2.7E-24 5.8E-29 214.4 10.8 93 509-601 1-97 (166)
37 KOG0470 1,4-alpha-glucan branc 99.9 1.3E-23 2.7E-28 241.1 15.0 167 504-686 229-409 (757)
38 KOG2212 Alpha-amylase [Carbohy 99.9 9.2E-23 2E-27 215.6 18.4 264 504-794 24-323 (504)
39 PRK14511 maltooligosyl trehalo 99.8 3.8E-20 8.3E-25 220.9 18.4 81 523-603 16-98 (879)
40 PLN03244 alpha-amylase; Provis 99.8 9.3E-18 2E-22 195.9 17.0 107 560-682 427-534 (872)
41 PRK14507 putative bifunctional 99.8 9.3E-18 2E-22 211.1 18.0 80 523-602 754-835 (1693)
42 COG3280 TreY Maltooligosyl tre 99.7 1.1E-15 2.4E-20 175.6 15.5 80 523-602 15-96 (889)
43 TIGR01531 glyc_debranch glycog 99.4 1.7E-13 3.7E-18 168.6 9.4 80 524-603 129-214 (1464)
44 PF14701 hDGE_amylase: glucano 98.5 2.2E-07 4.7E-12 104.7 8.6 81 524-604 19-107 (423)
45 PF14872 GHL5: Hypothetical gl 98.1 1E-05 2.2E-10 93.4 10.9 144 506-683 180-392 (811)
46 PF14871 GHL6: Hypothetical gl 98.1 3E-05 6.5E-10 75.0 11.4 128 530-680 3-132 (132)
47 PF02638 DUF187: Glycosyl hydr 98.1 2.6E-05 5.7E-10 85.8 12.2 139 525-680 17-162 (311)
48 PF02324 Glyco_hydro_70: Glyco 98.1 5.5E-06 1.2E-10 96.3 6.6 76 525-600 585-673 (809)
49 COG1649 Uncharacterized protei 97.5 0.00046 1E-08 78.1 9.7 140 525-681 62-208 (418)
50 PF02324 Glyco_hydro_70: Glyco 97.0 0.0023 5.1E-08 75.1 9.6 129 642-789 139-298 (809)
51 cd06592 GH31_glucosidase_KIAA1 96.6 0.029 6.3E-07 61.7 13.5 131 524-682 27-165 (303)
52 KOG3625 Alpha amylase [Carbohy 96.5 0.0026 5.7E-08 76.2 5.1 80 524-603 139-226 (1521)
53 PLN02635 disproportionating en 96.5 0.029 6.4E-07 66.1 13.6 59 508-567 30-95 (538)
54 cd06597 GH31_transferase_CtsY 96.3 0.025 5.5E-07 63.2 11.3 142 525-682 22-187 (340)
55 PF02065 Melibiase: Melibiase; 96.3 0.053 1.1E-06 61.8 13.6 134 525-682 56-193 (394)
56 cd06593 GH31_xylosidase_YicI Y 96.1 0.058 1.3E-06 59.3 12.5 138 524-684 21-161 (308)
57 PF13200 DUF4015: Putative gly 96.1 0.16 3.4E-06 56.3 15.4 131 524-682 10-147 (316)
58 PF13199 Glyco_hydro_66: Glyco 96.0 0.059 1.3E-06 63.8 12.6 146 524-682 115-268 (559)
59 PLN02316 synthase/transferase 95.7 0.21 4.7E-06 63.0 16.3 96 96-217 140-241 (1036)
60 PLN02316 synthase/transferase 95.4 0.6 1.3E-05 59.1 18.4 220 121-400 345-581 (1036)
61 cd06599 GH31_glycosidase_Aec37 95.2 0.19 4.2E-06 55.6 12.2 137 526-682 28-168 (317)
62 PF03423 CBM_25: Carbohydrate 95.1 0.072 1.6E-06 47.9 7.1 66 124-213 21-86 (87)
63 cd06594 GH31_glucosidase_YihQ 93.4 0.15 3.2E-06 56.5 6.4 139 525-682 21-166 (317)
64 PRK14582 pgaB outer membrane N 93.3 1 2.2E-05 54.8 13.7 130 525-680 332-466 (671)
65 cd06591 GH31_xylosidase_XylS X 93.2 0.15 3.3E-06 56.4 6.2 134 524-682 21-159 (319)
66 PF00150 Cellulase: Cellulase 93.2 0.16 3.6E-06 53.8 6.2 78 508-597 6-85 (281)
67 PF14488 DUF4434: Domain of un 93.1 0.44 9.5E-06 48.0 8.7 85 510-597 4-88 (166)
68 cd06604 GH31_glucosidase_II_Ma 92.8 0.63 1.4E-05 52.0 10.4 132 525-682 22-159 (339)
69 cd06600 GH31_MGAM-like This fa 92.5 0.23 4.9E-06 55.0 6.3 133 525-682 22-160 (317)
70 PRK14508 4-alpha-glucanotransf 92.1 0.34 7.4E-06 57.0 7.3 24 574-597 198-221 (497)
71 PF07745 Glyco_hydro_53: Glyco 91.7 0.59 1.3E-05 52.2 8.4 56 530-598 27-82 (332)
72 PRK11052 malQ 4-alpha-glucanot 91.5 0.37 8E-06 58.8 7.1 24 574-597 355-380 (695)
73 cd06602 GH31_MGAM_SI_GAA This 91.2 0.56 1.2E-05 52.5 7.6 137 526-682 23-165 (339)
74 TIGR00217 malQ 4-alpha-glucano 91.1 0.84 1.8E-05 54.0 9.2 24 574-597 212-235 (513)
75 COG3589 Uncharacterized conser 90.7 0.8 1.7E-05 50.7 7.9 58 524-595 13-70 (360)
76 PRK10426 alpha-glucosidase; Pr 90.6 1.3 2.9E-05 53.7 10.6 129 526-682 220-363 (635)
77 PF05913 DUF871: Bacterial pro 89.5 0.47 1E-05 53.5 5.1 58 525-597 12-70 (357)
78 TIGR01531 glyc_debranch glycog 89.4 2.1 4.5E-05 55.5 11.1 64 643-708 473-545 (1464)
79 PF02446 Glyco_hydro_77: 4-alp 89.2 1.5 3.2E-05 51.8 9.1 24 574-597 192-215 (496)
80 TIGR01370 cysRS possible cyste 89.1 1.5 3.2E-05 48.7 8.5 37 647-684 136-172 (315)
81 cd06598 GH31_transferase_CtsZ 88.4 1.3 2.8E-05 49.1 7.7 136 525-682 22-164 (317)
82 PF01055 Glyco_hydro_31: Glyco 87.7 0.93 2E-05 52.2 6.2 136 525-682 41-180 (441)
83 PRK10658 putative alpha-glucos 87.4 1.4 2.9E-05 53.9 7.6 127 527-682 283-418 (665)
84 COG1501 Alpha-glucosidases, fa 86.9 1.3 2.9E-05 54.7 7.2 85 577-682 324-415 (772)
85 KOG3625 Alpha amylase [Carbohy 86.8 2 4.4E-05 52.7 8.2 65 643-709 495-568 (1521)
86 cd06595 GH31_xylosidase_XylS-l 86.8 1.4 2.9E-05 48.3 6.5 129 525-682 23-159 (292)
87 cd06542 GH18_EndoS-like Endo-b 86.1 2.6 5.7E-05 44.8 8.1 81 572-697 49-142 (255)
88 PF02449 Glyco_hydro_42: Beta- 85.5 2.7 5.9E-05 47.5 8.3 121 528-681 11-137 (374)
89 PF10566 Glyco_hydro_97: Glyco 85.3 12 0.00026 40.8 12.7 64 523-592 28-91 (273)
90 cd06589 GH31 The enzymes of gl 81.8 7.1 0.00015 42.0 9.2 62 524-594 21-86 (265)
91 PF03423 CBM_25: Carbohydrate 81.2 2.4 5.2E-05 38.1 4.5 68 313-397 19-86 (87)
92 PLN02763 hydrolase, hydrolyzin 80.8 3.4 7.3E-05 52.3 7.1 129 526-681 200-335 (978)
93 cd02875 GH18_chitobiase Chitob 80.0 3.2 7E-05 46.8 6.1 29 652-680 92-120 (358)
94 PF03198 Glyco_hydro_72: Gluca 79.6 4.2 9.1E-05 45.0 6.5 64 526-610 52-115 (314)
95 PRK14508 4-alpha-glucanotransf 77.9 4.7 0.0001 47.6 6.8 65 509-574 8-75 (497)
96 PLN02950 4-alpha-glucanotransf 76.6 8.1 0.00018 48.9 8.7 69 509-577 263-339 (909)
97 cd06603 GH31_GANC_GANAB_alpha 76.6 4.1 9E-05 45.5 5.6 134 525-682 22-162 (339)
98 cd06569 GH20_Sm-chitobiase-lik 73.6 9.7 0.00021 44.4 7.8 76 526-601 21-125 (445)
99 COG3867 Arabinogalactan endo-1 73.4 9.4 0.0002 41.9 6.9 59 529-596 65-126 (403)
100 cd06601 GH31_lyase_GLase GLase 73.1 9.1 0.0002 42.9 7.2 109 525-682 22-133 (332)
101 PF00724 Oxidored_FMN: NADH:fl 72.0 23 0.0005 39.7 10.1 68 528-603 37-107 (341)
102 PF01120 Alpha_L_fucos: Alpha- 71.9 47 0.001 37.3 12.6 123 528-682 92-216 (346)
103 cd02871 GH18_chitinase_D-like 71.5 33 0.00072 37.9 11.1 62 572-681 58-119 (312)
104 COG2342 Predicted extracellula 70.6 63 0.0014 35.4 12.3 121 526-684 29-151 (300)
105 PRK11052 malQ 4-alpha-glucanot 70.5 11 0.00023 46.5 7.5 73 508-580 144-223 (695)
106 cd06570 GH20_chitobiase-like_1 69.4 40 0.00086 37.5 11.1 122 526-669 17-144 (311)
107 COG2730 BglC Endoglucanase [Ca 69.4 8 0.00017 44.5 5.8 59 528-594 74-136 (407)
108 PF13380 CoA_binding_2: CoA bi 69.2 8.7 0.00019 36.2 5.1 43 526-592 65-107 (116)
109 COG1640 MalQ 4-alpha-glucanotr 68.0 19 0.00041 42.7 8.5 24 574-597 210-233 (520)
110 PF01301 Glyco_hydro_35: Glyco 67.2 5.3 0.00012 44.4 3.7 57 530-594 27-83 (319)
111 cd06564 GH20_DspB_LnbB-like Gl 67.0 39 0.00085 37.6 10.5 121 526-672 16-155 (326)
112 KOG1065 Maltase glucoamylase a 66.8 38 0.00082 42.0 10.9 134 524-682 308-448 (805)
113 PLN03236 4-alpha-glucanotransf 64.7 16 0.00034 45.2 7.3 69 509-577 63-139 (745)
114 cd06565 GH20_GcnA-like Glycosy 63.4 24 0.00051 39.0 7.8 67 526-600 16-87 (301)
115 PF00728 Glyco_hydro_20: Glyco 63.0 9.3 0.0002 42.4 4.7 129 525-672 16-156 (351)
116 PRK15447 putative protease; Pr 62.5 21 0.00045 39.4 7.2 58 514-592 9-66 (301)
117 smart00812 Alpha_L_fucos Alpha 62.4 71 0.0015 36.6 11.6 116 529-681 83-202 (384)
118 cd06568 GH20_SpHex_like A subg 62.4 23 0.0005 39.6 7.5 122 526-669 17-151 (329)
119 cd06545 GH18_3CO4_chitinase Th 61.8 26 0.00056 37.4 7.6 79 573-696 45-128 (253)
120 cd04735 OYE_like_4_FMN Old yel 60.8 62 0.0013 36.5 10.7 29 573-603 77-105 (353)
121 PRK10076 pyruvate formate lyas 60.2 30 0.00065 36.3 7.5 61 526-592 144-211 (213)
122 cd04734 OYE_like_3_FMN Old yel 58.5 2.2E+02 0.0047 32.1 14.5 68 528-603 34-104 (343)
123 PF14701 hDGE_amylase: glucano 58.5 16 0.00036 42.2 5.6 47 643-691 360-415 (423)
124 TIGR03849 arch_ComA phosphosul 56.9 28 0.0006 37.3 6.6 47 530-594 74-120 (237)
125 TIGR03356 BGL beta-galactosida 56.2 25 0.00055 40.7 6.8 58 525-595 52-115 (427)
126 PF08821 CGGC: CGGC domain; I 55.9 38 0.00083 31.8 6.7 54 526-592 51-104 (107)
127 cd02742 GH20_hexosaminidase Be 55.8 26 0.00056 38.6 6.5 119 526-669 15-145 (303)
128 PRK14510 putative bifunctional 55.6 22 0.00048 46.6 6.8 69 508-576 725-800 (1221)
129 cd06562 GH20_HexA_HexB-like Be 55.6 29 0.00063 39.1 7.0 122 526-669 17-146 (348)
130 PRK07094 biotin synthase; Prov 53.8 26 0.00056 38.6 6.2 65 530-602 129-193 (323)
131 PF02679 ComA: (2R)-phospho-3- 53.2 29 0.00064 37.3 6.1 49 528-594 85-133 (244)
132 TIGR01210 conserved hypothetic 52.9 29 0.00063 38.5 6.3 61 530-598 117-179 (313)
133 cd02929 TMADH_HD_FMN Trimethyl 52.8 1E+02 0.0022 35.0 10.8 29 573-603 82-110 (370)
134 COG1902 NemA NADH:flavin oxido 52.4 3.2E+02 0.0068 31.2 14.5 28 573-602 82-109 (363)
135 PF13204 DUF4038: Protein of u 51.9 39 0.00084 37.1 7.1 69 526-598 29-110 (289)
136 cd04747 OYE_like_5_FMN Old yel 51.9 1.4E+02 0.003 34.0 11.6 29 573-603 77-105 (361)
137 PF14883 GHL13: Hypothetical g 51.8 2.3E+02 0.0049 31.4 12.5 123 528-678 18-142 (294)
138 TIGR00539 hemN_rel putative ox 51.8 29 0.00063 39.0 6.3 65 530-602 100-165 (360)
139 cd02931 ER_like_FMN Enoate red 51.3 1.3E+02 0.0029 34.3 11.5 28 573-602 82-110 (382)
140 PRK08207 coproporphyrinogen II 50.6 37 0.00081 40.1 7.1 65 530-602 269-334 (488)
141 cd02803 OYE_like_FMN_family Ol 49.8 71 0.0015 35.2 8.8 29 573-603 76-104 (327)
142 PF02446 Glyco_hydro_77: 4-alp 49.7 16 0.00034 43.2 3.8 53 524-576 15-70 (496)
143 PRK10605 N-ethylmaleimide redu 49.6 2.6E+02 0.0057 31.7 13.4 29 573-603 78-106 (362)
144 cd06563 GH20_chitobiase-like T 48.9 42 0.00091 37.9 6.9 76 526-601 17-114 (357)
145 TIGR00433 bioB biotin syntheta 48.6 46 0.001 36.0 7.0 60 530-598 123-182 (296)
146 PLN03059 beta-galactosidase; P 48.2 36 0.00079 42.6 6.6 56 530-593 62-117 (840)
147 smart00052 EAL Putative diguan 47.9 23 0.00049 36.4 4.3 74 525-599 131-215 (241)
148 PF01373 Glyco_hydro_14: Glyco 47.9 31 0.00067 39.6 5.6 67 523-602 12-81 (402)
149 PRK05628 coproporphyrinogen II 46.9 37 0.0008 38.4 6.1 65 530-602 108-173 (375)
150 PLN02801 beta-amylase 46.4 63 0.0014 38.2 7.7 65 525-602 35-102 (517)
151 COG0041 PurE Phosphoribosylcar 46.3 64 0.0014 32.3 6.7 52 524-594 13-64 (162)
152 cd04733 OYE_like_2_FMN Old yel 46.2 2.2E+02 0.0048 31.8 12.0 29 573-603 81-109 (338)
153 PRK06256 biotin synthase; Vali 45.8 34 0.00074 38.0 5.5 60 530-598 152-211 (336)
154 PRK08208 coproporphyrinogen II 45.7 40 0.00087 39.0 6.2 65 530-602 141-206 (430)
155 PRK14507 putative bifunctional 45.0 36 0.00077 45.9 6.2 69 508-576 173-248 (1693)
156 cd06547 GH85_ENGase Endo-beta- 44.0 32 0.00069 38.8 4.9 20 578-597 50-69 (339)
157 PLN02803 beta-amylase 43.8 69 0.0015 38.0 7.6 64 526-602 106-172 (548)
158 PLN02905 beta-amylase 43.3 77 0.0017 38.4 7.9 65 525-602 284-351 (702)
159 PLN03236 4-alpha-glucanotransf 43.0 50 0.0011 41.0 6.7 24 574-597 274-297 (745)
160 PRK13210 putative L-xylulose 5 42.6 53 0.0012 35.1 6.3 53 528-592 17-70 (284)
161 PLN02950 4-alpha-glucanotransf 42.4 54 0.0012 41.8 7.0 24 574-597 461-484 (909)
162 PF01212 Beta_elim_lyase: Beta 41.9 24 0.00052 38.8 3.5 24 572-595 143-166 (290)
163 PRK15452 putative protease; Pr 41.8 65 0.0014 37.7 7.1 55 531-599 14-69 (443)
164 PRK13561 putative diguanylate 41.8 40 0.00086 40.8 5.7 75 524-599 531-616 (651)
165 cd02857 CD_pullulan_degrading_ 41.6 9.8 0.00021 35.0 0.4 101 345-465 7-113 (116)
166 PRK09936 hypothetical protein; 41.4 57 0.0012 35.9 6.1 55 529-597 40-95 (296)
167 PRK05660 HemN family oxidoredu 41.2 55 0.0012 37.2 6.4 65 530-602 107-172 (378)
168 cd05014 SIS_Kpsf KpsF-like pro 40.7 77 0.0017 29.5 6.3 59 534-592 20-79 (128)
169 PRK13523 NADPH dehydrogenase N 40.6 3.2E+02 0.0069 30.7 12.2 70 528-602 38-107 (337)
170 PRK08573 phosphomethylpyrimidi 40.5 51 0.0011 38.4 6.1 72 527-599 17-109 (448)
171 PLN00197 beta-amylase; Provisi 40.0 87 0.0019 37.4 7.7 65 525-602 125-192 (573)
172 PLN02705 beta-amylase 39.9 86 0.0019 37.8 7.6 65 525-602 266-333 (681)
173 PRK13347 coproporphyrinogen II 39.8 63 0.0014 37.7 6.7 65 530-602 152-217 (453)
174 PLN02161 beta-amylase 38.6 1E+02 0.0022 36.6 7.8 65 525-602 115-182 (531)
175 PRK05904 coproporphyrinogen II 38.5 64 0.0014 36.5 6.3 65 530-602 103-168 (353)
176 PLN02411 12-oxophytodienoate r 38.0 3.7E+02 0.008 30.9 12.4 29 573-603 86-114 (391)
177 cd02932 OYE_YqiM_FMN Old yello 37.5 4.7E+02 0.01 29.1 12.9 69 528-603 34-104 (336)
178 TIGR00538 hemN oxygen-independ 37.5 69 0.0015 37.4 6.5 65 530-602 151-216 (455)
179 cd06546 GH18_CTS3_chitinase GH 37.4 1.6E+02 0.0034 31.8 8.8 45 653-697 93-141 (256)
180 TIGR03471 HpnJ hopanoid biosyn 36.5 80 0.0017 36.9 6.9 65 530-602 287-351 (472)
181 PRK01060 endonuclease IV; Prov 36.3 69 0.0015 34.3 5.9 51 528-590 13-63 (281)
182 PRK08446 coproporphyrinogen II 35.9 84 0.0018 35.3 6.7 65 530-602 98-163 (350)
183 cd02874 GH18_CFLE_spore_hydrol 35.5 59 0.0013 35.7 5.3 45 652-696 83-133 (313)
184 PRK09249 coproporphyrinogen II 35.4 84 0.0018 36.7 6.8 65 530-602 151-216 (453)
185 KOG0259 Tyrosine aminotransfer 35.0 72 0.0016 36.5 5.7 80 523-603 133-248 (447)
186 PRK10060 RNase II stability mo 34.7 43 0.00092 40.9 4.4 75 524-599 538-623 (663)
187 cd02930 DCR_FMN 2,4-dienoyl-Co 33.8 7.2E+02 0.016 27.9 14.8 71 528-603 34-104 (353)
188 PLN02389 biotin synthase 33.5 1E+02 0.0022 35.3 6.9 62 530-601 178-239 (379)
189 cd01335 Radical_SAM Radical SA 33.3 77 0.0017 30.7 5.3 65 530-601 88-152 (204)
190 PF07071 DUF1341: Protein of u 32.8 1.1E+02 0.0025 32.0 6.3 45 528-590 136-180 (218)
191 PRK11829 biofilm formation reg 32.7 67 0.0014 38.9 5.6 75 524-599 536-621 (660)
192 PRK08255 salicylyl-CoA 5-hydro 32.7 4.7E+02 0.01 32.7 13.1 29 573-603 474-503 (765)
193 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.2 1.1E+02 0.0023 28.4 5.8 60 532-592 17-78 (126)
194 KOG0496 Beta-galactosidase [Ca 32.1 89 0.0019 38.0 6.2 57 530-594 52-108 (649)
195 PF07555 NAGidase: beta-N-acet 31.9 3.1E+02 0.0067 30.6 10.1 97 526-678 14-110 (306)
196 PRK08599 coproporphyrinogen II 31.9 93 0.002 35.2 6.3 65 530-602 100-165 (377)
197 TIGR01211 ELP3 histone acetylt 31.5 76 0.0016 37.9 5.6 65 530-602 206-270 (522)
198 PRK05939 hypothetical protein; 31.1 79 0.0017 36.2 5.6 62 535-596 105-170 (397)
199 PRK09856 fructoselysine 3-epim 30.8 1.3E+02 0.0028 32.0 6.9 52 528-592 14-65 (275)
200 PRK07379 coproporphyrinogen II 30.5 1E+02 0.0022 35.4 6.3 65 530-602 115-180 (400)
201 PF07488 Glyco_hydro_67M: Glyc 30.3 2.1E+02 0.0046 31.9 8.2 59 524-594 54-112 (328)
202 TIGR03127 RuMP_HxlB 6-phospho 30.2 1.5E+02 0.0033 29.5 6.9 55 534-592 50-104 (179)
203 COG2200 Rtn c-di-GMP phosphodi 29.9 81 0.0018 33.8 5.1 72 525-597 134-216 (256)
204 cd00287 ribokinase_pfkB_like r 29.9 82 0.0018 31.1 4.9 54 531-597 41-94 (196)
205 cd00598 GH18_chitinase-like Th 29.8 2.3E+02 0.0051 28.5 8.3 47 652-698 84-139 (210)
206 PTZ00445 p36-lilke protein; Pr 29.7 1.3E+02 0.0027 32.0 6.2 61 529-592 31-96 (219)
207 TIGR00542 hxl6Piso_put hexulos 29.4 1.1E+02 0.0023 32.9 6.0 53 528-591 17-69 (279)
208 PRK05967 cystathionine beta-ly 29.2 75 0.0016 36.6 4.9 28 570-597 162-189 (395)
209 PRK11059 regulatory protein Cs 29.1 70 0.0015 38.8 5.0 75 524-599 530-615 (640)
210 cd01948 EAL EAL domain. This d 28.9 48 0.001 34.0 3.1 75 525-600 130-215 (240)
211 COG0826 Collagenase and relate 28.8 1.5E+02 0.0033 33.6 7.1 54 530-594 16-69 (347)
212 cd02933 OYE_like_FMN Old yello 28.4 5E+02 0.011 29.2 11.2 29 573-603 76-104 (338)
213 PRK06294 coproporphyrinogen II 28.4 1.3E+02 0.0027 34.2 6.6 65 530-602 103-168 (370)
214 smart00729 Elp3 Elongator prot 27.7 1.5E+02 0.0033 29.1 6.4 64 530-601 100-164 (216)
215 COG3661 AguA Alpha-glucuronida 27.6 1.6E+02 0.0035 34.3 6.9 71 515-596 173-243 (684)
216 COG0520 csdA Selenocysteine ly 26.8 54 0.0012 37.8 3.3 65 530-595 126-200 (405)
217 KOG2499 Beta-N-acetylhexosamin 26.6 2.6E+02 0.0057 33.0 8.5 30 572-601 248-278 (542)
218 PRK09776 putative diguanylate 26.2 80 0.0017 40.4 5.0 75 524-599 971-1056(1092)
219 PRK05799 coproporphyrinogen II 26.0 1.4E+02 0.003 33.8 6.3 65 530-602 99-164 (374)
220 cd00609 AAT_like Aspartate ami 25.8 1.2E+02 0.0026 32.5 5.7 54 531-598 123-176 (350)
221 cd04795 SIS SIS domain. SIS (S 25.5 80 0.0017 27.0 3.4 65 528-592 11-79 (87)
222 PF02836 Glyco_hydro_2_C: Glyc 25.3 1.7E+02 0.0036 31.9 6.6 65 508-596 13-81 (298)
223 cd04724 Tryptophan_synthase_al 25.2 1.4E+02 0.003 31.8 5.8 48 528-597 92-139 (242)
224 PRK10551 phage resistance prot 25.2 1.3E+02 0.0029 35.8 6.2 71 528-599 398-479 (518)
225 PRK11359 cyclic-di-GMP phospho 25.1 57 0.0012 40.1 3.3 75 524-599 675-760 (799)
226 cd05017 SIS_PGI_PMI_1 The memb 25.0 2.2E+02 0.0048 26.5 6.5 57 533-592 18-75 (119)
227 TIGR03551 F420_cofH 7,8-dideme 24.9 95 0.002 34.8 4.7 64 530-599 141-204 (343)
228 PRK06582 coproporphyrinogen II 24.8 1.5E+02 0.0034 33.9 6.4 65 530-602 111-175 (390)
229 PF01791 DeoC: DeoC/LacD famil 23.8 67 0.0015 33.9 3.1 56 530-598 79-136 (236)
230 PLN02808 alpha-galactosidase 23.8 1.4E+02 0.0029 34.5 5.7 61 525-592 47-115 (386)
231 PRK01278 argD acetylornithine 23.4 1.7E+02 0.0036 33.0 6.3 59 525-600 164-222 (389)
232 PLN02651 cysteine desulfurase 23.3 1.8E+02 0.0038 32.4 6.5 65 531-596 103-177 (364)
233 smart00518 AP2Ec AP endonuclea 23.3 2E+02 0.0044 30.5 6.7 53 528-592 11-63 (273)
234 TIGR00262 trpA tryptophan synt 23.3 1.9E+02 0.0042 31.1 6.5 48 528-597 103-150 (256)
235 cd00945 Aldolase_Class_I Class 23.2 2.3E+02 0.005 28.0 6.7 59 526-599 64-125 (201)
236 PRK05093 argD bifunctional N-s 23.1 1.8E+02 0.004 32.9 6.7 60 525-601 173-232 (403)
237 TIGR01162 purE phosphoribosyla 23.1 1.8E+02 0.0038 29.4 5.6 50 524-592 9-58 (156)
238 PRK09058 coproporphyrinogen II 23.0 2.7E+02 0.0058 32.6 8.0 65 530-602 163-228 (449)
239 cd05005 SIS_PHI Hexulose-6-pho 22.9 2.9E+02 0.0062 27.6 7.3 55 534-592 53-107 (179)
240 TIGR02666 moaA molybdenum cofa 22.9 2.3E+02 0.0049 31.4 7.2 60 530-596 102-162 (334)
241 PRK00164 moaA molybdenum cofac 22.8 2.2E+02 0.0048 31.4 7.1 61 529-597 107-168 (331)
242 PRK15108 biotin synthase; Prov 22.7 2.4E+02 0.0052 31.8 7.3 60 530-598 136-195 (345)
243 PRK09057 coproporphyrinogen II 22.7 1.4E+02 0.003 34.0 5.5 64 531-602 105-168 (380)
244 COG1242 Predicted Fe-S oxidore 22.6 2.9E+02 0.0063 30.6 7.5 54 573-681 167-220 (312)
245 TIGR03581 EF_0839 conserved hy 22.5 1.7E+02 0.0036 31.2 5.4 44 528-589 136-179 (236)
246 PF13407 Peripla_BP_4: Peripla 22.5 2.2E+02 0.0048 29.4 6.7 48 523-592 38-85 (257)
247 PRK04302 triosephosphate isome 22.5 1.9E+02 0.0041 30.3 6.1 43 533-593 78-120 (223)
248 PRK13361 molybdenum cofactor b 22.3 2.1E+02 0.0046 31.8 6.8 61 529-597 103-164 (329)
249 cd03412 CbiK_N Anaerobic cobal 22.1 1.6E+02 0.0035 28.1 5.1 58 528-585 57-125 (127)
250 cd06450 DOPA_deC_like DOPA dec 22.0 1.4E+02 0.003 32.6 5.3 29 570-598 161-189 (345)
251 TIGR01212 radical SAM protein, 21.7 1.9E+02 0.0042 31.8 6.2 66 528-601 124-190 (302)
252 TIGR02006 IscS cysteine desulf 21.7 1.9E+02 0.0041 32.8 6.4 68 528-596 104-181 (402)
253 COG1874 LacA Beta-galactosidas 21.6 3.9E+02 0.0084 33.1 9.2 56 527-594 30-88 (673)
254 PRK08898 coproporphyrinogen II 21.5 1.6E+02 0.0035 33.7 5.8 65 530-602 122-186 (394)
255 PRK08114 cystathionine beta-ly 21.5 1.1E+02 0.0024 35.2 4.5 63 534-596 120-188 (395)
256 KOG3111 D-ribulose-5-phosphate 21.1 1.2E+02 0.0025 31.8 3.9 70 524-594 14-119 (224)
257 PRK13125 trpA tryptophan synth 20.9 2.1E+02 0.0045 30.5 6.1 51 527-596 88-138 (244)
258 TIGR02026 BchE magnesium-proto 20.9 1.9E+02 0.0041 34.2 6.4 64 530-601 287-350 (497)
259 TIGR03699 mena_SCO4550 menaqui 20.8 1.2E+02 0.0025 33.9 4.4 63 530-602 143-208 (340)
260 PRK09856 fructoselysine 3-epim 20.5 3.6E+02 0.0078 28.6 7.9 60 526-594 89-149 (275)
261 TIGR03235 DNA_S_dndA cysteine 20.5 2.1E+02 0.0044 31.6 6.2 34 566-599 147-182 (353)
262 TIGR00423 radical SAM domain p 20.4 1.5E+02 0.0033 32.5 5.2 65 530-600 107-171 (309)
263 PF01136 Peptidase_U32: Peptid 20.3 1.4E+02 0.003 31.2 4.5 46 527-600 2-49 (233)
264 cd07944 DRE_TIM_HOA_like 4-hyd 20.3 1.1E+03 0.024 25.4 12.0 45 530-594 85-129 (266)
265 PLN02721 threonine aldolase 20.2 2.1E+02 0.0045 31.2 6.2 59 525-596 119-180 (353)
266 COG2342 Predicted extracellula 20.2 84 0.0018 34.5 2.9 64 523-592 122-191 (300)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=1.4e-171 Score=1486.37 Aligned_cols=794 Identities=71% Similarity=1.218 Sum_probs=744.5
Q ss_pred CcceeccccchhhhhccCCCCCCCccccccccceeccccCCCcccccccccccceecccCCCCCCCCCCCCCCCC---CC
Q 003613 1 MSTVTIRPLLPSYRRANLNFRDRTNILLKPNYINYSIKSAPNARRFCSFKKLQKITVSSSTSTSTSPATSTDTTP---VR 77 (807)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (807)
||||||||||+||||+++.++++++ .+|+||||++++|+||++||||+....+.-. ..++++++|++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (894)
T PLN02784 1 MSTVCIESLLHHSGLEKNSKIGRGK--RSPSSLNLSLKSLTNGKSFCNFKMSVGVSST------TRRASSSDTALVETAQ 72 (894)
T ss_pred CCceeeHHHHhHHhhccccccCccc--ccccccccccccccCCcccccccCCCCcccc------cccccccceeeeeccc
Confidence 9999999999999999999977433 3499999999999999999999875544222 12467777877 56
Q ss_pred CCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccc
Q 003613 78 PGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKD 157 (807)
Q Consensus 78 ~~~~~~~e~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~~~lHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~ 157 (807)
..+++|+|.|++.++++|||+|+|+|+ +++++|++|+|+||+|++|||||||++.+++++||++||++||||||+.+|+
T Consensus 73 ~~~v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~ 151 (894)
T PLN02784 73 SDDVFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKD 151 (894)
T ss_pred cccceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecC
Confidence 889999999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCceeEEEEeecCCCCceeEEEEEEeCCccchhccCCcceeeecccccccCCccccccccccccCchH
Q 003613 158 YAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGAL 237 (807)
Q Consensus 158 ~A~~T~f~~~~~~~~~~~~~i~~~~d~~~~~i~FVlk~~~~~~W~~~~G~df~v~l~~~~~~~~~~~~~~~~~~~w~~~~ 237 (807)
+||||||++++.|+.++++.|+|+++++++||+||||++++|+||||||+||||||+++++++++++|+++++.+|||+|
T Consensus 152 ~A~eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l 231 (894)
T PLN02784 152 YAIETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGAL 231 (894)
T ss_pred eEEeccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCcc
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCcccchhhhhhhhhhhhhhcccchhhheecceeEEEEeeccCCCceEEEEEcCCCCCeEE
Q 003613 238 GQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVV 317 (807)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~v~~~~~~~~~~~~v~~~td~~~~~vl 317 (807)
++||++++|+|+++++.+++++.+.++....|+|++||||+||+|++.++|.++|+||||++++|++|||+||+|+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvl 311 (894)
T PLN02784 232 GQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVV 311 (894)
T ss_pred ccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEE
Confidence 99999999999999999998887889999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccCCCCCcccCCCCCCCCcceeecccccccCccccCCCcceeEEEecCccceeEEEEEcCCccccccCCcceEEeC
Q 003613 318 HWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (807)
Q Consensus 318 HWgv~~~~~~~W~~Pp~~~~p~~s~~~~~a~eTpf~~~~~~~~~~~~~~l~~~~~g~~FVl~~~~~~W~k~~g~df~i~l 397 (807)
||||||++++||++||++++|+||+++++||||||++.+++.++++.|+|+.+|.||+|||++++++||||+|+||||||
T Consensus 312 HWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl 391 (894)
T PLN02784 312 HWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPL 391 (894)
T ss_pred EeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999966999999999999999
Q ss_pred CCCCCCCC---cccccccccCCCcccccccccchhhHHHHHHHhhcccccccchhhcccchhhhhhhhHHhhhhhhhhhh
Q 003613 398 TSSSCLPA---ESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYS 474 (807)
Q Consensus 398 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~tv~~~~~~~pav~Yq 474 (807)
..+++.++ +.|+|.. ....+++++..+|+++||++||++++|++++++++++.++.|..+++++++++|.+|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (894)
T PLN02784 392 LTSSSLPTQTEQGQSEGK----TAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYS 467 (894)
T ss_pred Cchhcccccccccccccc----cccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhhe
Confidence 99988776 4455544 5677889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccc-cCCCCCCCCCCCCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCC
Q 003613 475 IFRTTAPTFFEEAAVELE-ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV 553 (807)
Q Consensus 475 IFp~~~drF~~~~~~~~~-~~~p~~~~~~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~ 553 (807)
||++.++.|.+.++.+.+ ..+|+.++..++++.+++++|+|+|+++++|.||++|+++|+||++||||+|||+|++++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~ 547 (894)
T PLN02784 468 IFRSTIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV 547 (894)
T ss_pred eeccCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 999999999988887755 3568777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCC
Q 003613 554 SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 633 (807)
Q Consensus 554 s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~ 633 (807)
++|||++.|||+||++|||.+||++||++||++||+||+|+|+||++..+.+.++.|..|.+..+|.++..+.+++.|.+
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G 627 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 627 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999887766788888888889998888778888998
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHhcCCcEEEeccccCCCccc
Q 003613 634 RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY 713 (807)
Q Consensus 634 ~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~~~~~lvGE~w~~~~~~~ 713 (807)
+++++++.++.++||||+.||+||++|.+|++||++++||||||||+|+|||..|+++++++.++.|+|||+|++++|..
T Consensus 628 rG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~ 707 (894)
T PLN02784 628 RGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY 707 (894)
T ss_pred cCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEecccccccc
Confidence 89999999999999999999999999999999999899999999999999999999999999888999999999877777
Q ss_pred ccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccccCCCCCCC
Q 003613 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQV 793 (807)
Q Consensus 714 G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveNHDt~R~~~ 793 (807)
|+++|+|+++++.+.+|++.+++..++|||++++.|..++.+++.|++.+..+..+++++.+|.+|||||+||||++.|+
T Consensus 708 g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~ 787 (894)
T PLN02784 708 GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG 787 (894)
T ss_pred CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc
Confidence 89999999999999999998888899999999999999998889999999888889999999999999999999999999
Q ss_pred CCccccc-ccccCCC
Q 003613 794 RSSLCST-ISQDFTY 807 (807)
Q Consensus 794 ~~~~~~~-v~~~~~~ 807 (807)
+|.+... +-++|||
T Consensus 788 ~w~~p~~k~~~AYAy 802 (894)
T PLN02784 788 HWRFPEGKEMQGYAY 802 (894)
T ss_pred cCCCCccchhhHHHH
Confidence 9998765 5677776
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.6e-54 Score=482.98 Aligned_cols=295 Identities=51% Similarity=1.030 Sum_probs=251.4
Q ss_pred ceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC
Q 003613 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 587 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~G 587 (807)
.++++|+|+|++++ +.++++|+++|+||++||||+|||+|++++.++|||++.|||+||++|||++||++||++||++|
T Consensus 11 ~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~g 89 (401)
T PLN02361 11 REILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYN 89 (401)
T ss_pred CcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcC
Confidence 67899999999874 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeEeecccccccCcCCCcccccCC-cCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003613 588 MKILGDVVLNHRCAHYQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCW 666 (807)
Q Consensus 588 IkVILD~V~NHtg~d~~~~~~~w~~~~g-~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~ 666 (807)
|+||+|+|+||++.......+.|..+.+ ...|....+.... .+.+++..+.++..+||||++||+||++|++|++|
T Consensus 90 i~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~w 166 (401)
T PLN02361 90 VRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIW 166 (401)
T ss_pred CEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHH
Confidence 9999999999997665444555555544 2345443322111 12234455677889999999999999999999998
Q ss_pred HHHhcCccEEEEccccchhHHHHHHHHHhcCCcEEEeccccCCCcc--cccccccchhhHHHHHHHHhhcCCCceecchh
Q 003613 667 LRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDVT 744 (807)
Q Consensus 667 Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~~~~~lvGE~w~~~~~~--~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~ 744 (807)
|++++||||||+|+|+|++.+|+++++++.+|.|+|||+|++..+. .|.++|+|+++++.+..|++..++..++|||+
T Consensus 167 l~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 167 LRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 8877999999999999999999999999888899999999874332 23488999988999999999777788999999
Q ss_pred hHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccccCCCCCCCCCcccc-cccccCCC
Q 003613 745 TKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQVRSSLCS-TISQDFTY 807 (807)
Q Consensus 745 l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveNHDt~R~~~~~~~~~-~v~~~~~~ 807 (807)
++..+++++. ++.|++.+..++.++++..+|.++||||+||||+|++++|.+.. .+.++|||
T Consensus 247 l~~~l~~a~~-~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~ 309 (401)
T PLN02361 247 TKGILQEAVK-GQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAY 309 (401)
T ss_pred HHHHHHHHHh-hhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHH
Confidence 9999999994 56889988877777888889999999999999999999988854 36667764
No 3
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=4.2e-54 Score=484.39 Aligned_cols=299 Identities=45% Similarity=0.953 Sum_probs=248.0
Q ss_pred cceeeeeeeeccC-CCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC-CCCCCHHHHHHHHHHHH
Q 003613 507 GFEILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFH 584 (807)
Q Consensus 507 ~~~v~~~~F~Wd~-~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID-p~lGt~edfk~LV~aaH 584 (807)
..++++|+|+|++ +.+|||+++|++|||||++||||+|||+|++++.++|||++.|||+|| ++|||.+||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 3578999999998 557899999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HcCcEEEEeEeecccccccCcCCCcccccCC-----cCCCCCCcccCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 585 DVGMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHF-QGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 585 ~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g-----~~~w~~~~~~~~~~~f-~~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
++|||||+|+|+||++.++....+.|..+.+ ...|.....+.+...| .+.+++..+.++.++||||++||+|++
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999887644444543321 2345433222222233 234566677889999999999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHhcCCcEEEeccccCCCcc-cccccccchhhHHHHHHHHhhcCCC
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT-YGEMDHNQDAHRQRIIDWINAASGT 737 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~~~~~lvGE~w~~~~~~-~G~~~y~~~~~~~~i~~yl~~~~~~ 737 (807)
+|+++++||++++||||||+|+|+|++.+|+++++++.+|.|+|||+|++.+|. .++..|+++.+++.+.+|++..++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 999999999888999999999999999999999888888899999999975543 4578899888899999999866543
Q ss_pred ---ceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccccCCCCCCCCCccccc-ccccCC
Q 003613 738 ---AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQVRSSLCST-ISQDFT 806 (807)
Q Consensus 738 ---~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveNHDt~R~~~~~~~~~~-v~~~~~ 806 (807)
.++|||+++..+..++. ++.|++.+..+...++++.+|..+||||+||||+|++.+|..... +.++||
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA 334 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVE-GELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYA 334 (428)
T ss_pred cCcceeecccchHHHHHHhc-CCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHH
Confidence 45999999987766664 457788776666677788999999999999999999988875333 555554
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=3.7e-48 Score=454.50 Aligned_cols=294 Identities=17% Similarity=0.185 Sum_probs=197.1
Q ss_pred eEEeCCCCCCCCCcccccccccCCCcccccccccchhhHHHHHHHhhcccccccc-hhhcccchhhhhhhhHHhhhhh--
Q 003613 393 FYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSD-ISRKTKSKEAQKSILLEIEKLA-- 469 (807)
Q Consensus 393 f~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~tv~~~~~~~p-- 469 (807)
-.++|...... ...+.|.+ ++.........+|+|.++.+-..+.-+..+. +....+...+|++.+ .++|
T Consensus 47 ~~~~m~~~~~~---~~~~~~~~--~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~---~~~P~W 118 (598)
T PRK10785 47 YLLPMEKQRSQ---PQVTAWRA--SLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSRRPPARLEQFAVDVP---DQGPQW 118 (598)
T ss_pred EEEEeEEeecC---CCceEEEE--EEEcCCCCceEEEEEEEEeCCEEEEEcCCceeeccCCCccceEeeCC---CCCCch
Confidence 36788766553 23345655 4444334567889888853111111111110 111123356777665 3445
Q ss_pred ---hhhhhcccccccccccccccccc-cC-----CCCCCCCCCCCcc---ceeeeeeeeccCCCCCCcHHHHHHhHHHHH
Q 003613 470 ---AEAYSIFRTTAPTFFEEAAVELE-ES-----KPPAKISPGTGTG---FEILCQGFNWESHKSGRWYMELKEKATELS 537 (807)
Q Consensus 470 ---av~YqIFp~~~drF~~~~~~~~~-~~-----~p~~~~~~~~~~~---~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk 537 (807)
+|+||||| |||++++..+.+ .. .+.......+|.. ++.....|. ||||+||++|||||+
T Consensus 119 ~~~~v~YqIfp---DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~------GGDl~GI~~kLdYL~ 189 (598)
T PRK10785 119 VADQVFYQIFP---DRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFY------GGDLDGISEKLPYLK 189 (598)
T ss_pred hhcCEEEEech---hhhcCCCcccCccCCceeeccCCCcccccCcCCCccccccccccc------CcCHHHHHHHHHHHH
Confidence 99999999 999987764422 00 0000011111111 111122343 999999999999999
Q ss_pred HcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccC--C
Q 003613 538 SLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFG--G 615 (807)
Q Consensus 538 ~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~--g 615 (807)
+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||||.+|+ |+... +
T Consensus 190 ~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-----~f~~~~~~ 264 (598)
T PRK10785 190 KLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-----WFDRHNRG 264 (598)
T ss_pred HcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-----HHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999874 21100 0
Q ss_pred -cCCCCCCccc-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCccEEEEccccch----
Q 003613 616 -RLNWDDRAVV-ADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDFVRGF---- 684 (807)
Q Consensus 616 -~~~w~~~~~~-~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~----~l~~Wi~e-~GVDGfRlDaa~~f---- 684 (807)
...+.+...+ .+...|...+.+.+|+++..+|+||++||+|+++|++ ++++|+++ +||||||||+|+++
T Consensus 265 ~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~ 344 (598)
T PRK10785 265 TGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGG 344 (598)
T ss_pred ccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhcccc
Confidence 0001110000 1111223334456677888999999999999999995 89999975 89999999999854
Q ss_pred --------hHHHHHHHHHhcCCcEEEeccccC
Q 003613 685 --------WGGYVKDYLEATEPYFAVGEYWDS 708 (807)
Q Consensus 685 --------~~~~i~~~~~~~~~~~lvGE~w~~ 708 (807)
|+++.+.+++..++++++||+|.+
T Consensus 345 ~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~ 376 (598)
T PRK10785 345 GARNNLQHVAGITQAAKEENPEAYVLGEHFGD 376 (598)
T ss_pred CccccHHHHHHHHHHHHhhCCCeEEEEeccCC
Confidence 455444444444669999999975
No 5
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=2.3e-45 Score=421.51 Aligned_cols=268 Identities=28% Similarity=0.551 Sum_probs=201.3
Q ss_pred ceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCCCcccCC---------ccCCCCCCHHH
Q 003613 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDE 575 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGYd~~Dy~---------~IDp~lGt~ed 575 (807)
.++++|+|+|+++.+|.+++||++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++|
T Consensus 3 ~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~d 82 (479)
T PRK09441 3 NGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEE 82 (479)
T ss_pred CceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHH
Confidence 46899999999998888999999999999999999999999999875 5999999999 78999999999
Q ss_pred HHHHHHHHHHcCcEEEEeEeecccccccCc---------CC------------CcccccCCc-----C---CCCCCcccC
Q 003613 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN---------QN------------GVWNIFGGR-----L---NWDDRAVVA 626 (807)
Q Consensus 576 fk~LV~aaH~~GIkVILD~V~NHtg~d~~~---------~~------------~~w~~~~g~-----~---~w~~~~~~~ 626 (807)
||+||++||++|||||+|+|+||++..+.. ++ ..|.++... . .|.......
T Consensus 83 l~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (479)
T PRK09441 83 LLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSG 162 (479)
T ss_pred HHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCC
Confidence 999999999999999999999999964320 00 011111000 0 000000000
Q ss_pred CCCCCCC----------CCCCCCC----------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhH
Q 003613 627 DDPHFQG----------RGNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (807)
Q Consensus 627 ~~~~f~~----------~~~~~~~----------~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~ 686 (807)
..|.. ......| +.+..+||||++||+|+++|++++++|++++||||||+|+|+|+..
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~ 240 (479)
T PRK09441 163 --TDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDA 240 (479)
T ss_pred --cccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCH
Confidence 00000 0000111 1345699999999999999999999999779999999999999888
Q ss_pred HHHHHHHHh----c-CCcEEEeccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhh
Q 003613 687 GYVKDYLEA----T-EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRL 761 (807)
Q Consensus 687 ~~i~~~~~~----~-~~~~lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l 761 (807)
+|+++++++ . ++++++||+|.+. ...+..|+.......++|||++++.++.++.++...++
T Consensus 241 ~f~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l 306 (479)
T PRK09441 241 WFIKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDM 306 (479)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccch
Confidence 888877765 2 3589999999852 23556787755456789999999999999976554555
Q ss_pred hhccCCCCCCcCcCCCcceecccccCCCCCCC
Q 003613 762 SDEKGKPPGVVGWWPSRAVTFIENHDTGSTQV 793 (807)
Q Consensus 762 ~~~~g~~~~l~~~~P~~avtFveNHDt~R~~~ 793 (807)
.+... .......|..+++||+|||++|+..
T Consensus 307 ~~~~~--~~~~~~~~~~~~~FldNHD~~R~~~ 336 (479)
T PRK09441 307 RNIFD--GTLVEADPFHAVTFVDNHDTQPGQA 336 (479)
T ss_pred HhhhC--cchhhcCcccceeeeccccCCCccc
Confidence 44432 1122346778899999999999874
No 6
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=3e-43 Score=414.05 Aligned_cols=284 Identities=20% Similarity=0.308 Sum_probs=189.7
Q ss_pred hhhhhcccccccccccccccccccCCCCCCCCCCCCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCC
Q 003613 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (807)
Q Consensus 470 av~YqIFp~~~drF~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PI 549 (807)
+++||||| |||++++..+.. +..+ .+++. --...|+ ||||+||++|||||++||||+|||+||
T Consensus 190 aviYqI~~---DRF~nGd~~Nd~---~~g~--~~d~~---~~~~~f~------GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLT---DRFENGDPSNDH---SYGR--HKDGM---QEIGTFH------GGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEeh---hhhcCCCccccc---ccCc--CCCCc---cccCccc------CCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 88999999 999987765522 1111 01110 1124455 999999999999999999999999999
Q ss_pred CCC---------------CCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccC-c--------
Q 003613 550 TES---------------VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ-N-------- 605 (807)
Q Consensus 550 fes---------------~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~-~-------- 605 (807)
+++ .++|||++.||+.|||+|||++||++||++||++|||||||+|+||+|..+. +
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 986 2679999999999999999999999999999999999999999999995321 0
Q ss_pred -----------CCC---cccccCCcCCCCCCcccC---CCCCCCC----------CCCCC------CCCCCCCCCCCCCC
Q 003613 606 -----------QNG---VWNIFGGRLNWDDRAVVA---DDPHFQG----------RGNKS------SGDNFHAAPNIDHS 652 (807)
Q Consensus 606 -----------~~~---~w~~~~g~~~w~~~~~~~---~~~~f~~----------~~~~~------~~~~~~~lpdLn~~ 652 (807)
... .|.+..+ .+|.+..... +.+.+.. .++|. ..+....|||||++
T Consensus 333 ~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te 411 (683)
T PRK09505 333 LYLSGDENKKTLGERWSDWQPAAG-QNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTE 411 (683)
T ss_pred hhhhccccccccCccccccccccc-ccccccccccccCCccccccccccccccccccccccccccccccccccCCccccc
Confidence 001 1111111 1222110000 0000100 00000 01123468888876
Q ss_pred -----------------------CHHHHHHHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHhc-------------
Q 003613 653 -----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT------------- 696 (807)
Q Consensus 653 -----------------------np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~------------- 696 (807)
||+|+++|++|+++|++++||||||||+|+|+..+|+++++++.
T Consensus 412 ~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d 491 (683)
T PRK09505 412 STQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPD 491 (683)
T ss_pred CccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45999999999999998899999999999988777766664321
Q ss_pred -----CCcEEEeccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcC-chhhhhhccCCCCC
Q 003613 697 -----EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC-EYWRLSDEKGKPPG 770 (807)
Q Consensus 697 -----~~~~lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g-~~~~l~~~~g~~~~ 770 (807)
.+++++||+|..... ...|.. .+++++|||+++..+..++... ....+.+.. ..
T Consensus 492 ~~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~---~~ 551 (683)
T PRK09505 492 KALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQM---AE 551 (683)
T ss_pred cccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHH---hh
Confidence 248999999974210 123443 5689999999988776554311 111111110 00
Q ss_pred CcCcCCCcceecccccCCCCCCC
Q 003613 771 VVGWWPSRAVTFIENHDTGSTQV 793 (807)
Q Consensus 771 l~~~~P~~avtFveNHDt~R~~~ 793 (807)
.. .+..+++||+|||+.|+..
T Consensus 552 ~~--~~~~~l~FLdNHDt~Rf~s 572 (683)
T PRK09505 552 KL--QDFNVLSYLSSHDTRLFFE 572 (683)
T ss_pred hc--CccceeecccCCChhhhhh
Confidence 01 2235689999999999864
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=8.9e-40 Score=380.19 Aligned_cols=270 Identities=20% Similarity=0.290 Sum_probs=184.5
Q ss_pred CCccceeeeeeeeccCCCC-CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHH
Q 003613 504 TGTGFEILCQGFNWESHKS-GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVN 581 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~-GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (807)
+.+.|+|++++|. |++++ +|||+||+++||||++||||+|||+|||++.+ +|||++.||++|||+|||.++|++||+
T Consensus 5 ~~viYqi~~~~f~-d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~ 83 (539)
T TIGR02456 5 DAVFYEVHVRSFF-DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVD 83 (539)
T ss_pred cceEEEEehhHhh-cCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHH
Confidence 3445555555554 33332 59999999999999999999999999999987 799999999999999999999999999
Q ss_pred HHHHcCcEEEEeEeecccccccC----------cCCCcccccCCcC-CCCCCccc---CCCCCC---CCCCCCCCCCCCC
Q 003613 582 KFHDVGMKILGDVVLNHRCAHYQ----------NQNGVWNIFGGRL-NWDDRAVV---ADDPHF---QGRGNKSSGDNFH 644 (807)
Q Consensus 582 aaH~~GIkVILD~V~NHtg~d~~----------~~~~~w~~~~g~~-~w~~~~~~---~~~~~f---~~~~~~~~~~~~~ 644 (807)
+||++||+||||+|+||+|.+++ ++...|+.+.... .+...... .....| ...+.++...++.
T Consensus 84 ~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 163 (539)
T TIGR02456 84 EAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFS 163 (539)
T ss_pred HHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccC
Confidence 99999999999999999999873 1112232211100 00000000 000011 1112233334567
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccch-----------------hHHHHHHHHHhcCCcEEEecccc
Q 003613 645 AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF-----------------WGGYVKDYLEATEPYFAVGEYWD 707 (807)
Q Consensus 645 ~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f-----------------~~~~i~~~~~~~~~~~lvGE~w~ 707 (807)
.+|+||+.||+||++|++++++|+ ++||||||||+++++ |.++.+.+++..++++++||+|.
T Consensus 164 ~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~ 242 (539)
T TIGR02456 164 HQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQ 242 (539)
T ss_pred CCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 899999999999999999999999 699999999998754 44443333333456999999864
Q ss_pred CCCcccccccccchhhHHHHHHHHhh-cC-CCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccc
Q 003613 708 SLSYTYGEMDHNQDAHRQRIIDWINA-AS-GTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIEN 785 (807)
Q Consensus 708 ~~~~~~G~~~y~~~~~~~~i~~yl~~-~~-~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveN 785 (807)
. ...+..|+.. .+ +++++|||++...+..++...+...+.+.+...... ..+...++|++|
T Consensus 243 ~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~--~~~~~~~~fl~n 305 (539)
T TIGR02456 243 W---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDI--PDSCQWCIFLRN 305 (539)
T ss_pred C---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhc--cCCCceeeecCC
Confidence 2 1234566642 22 688999999987776665544433333322111111 122345789999
Q ss_pred cCCCCCC
Q 003613 786 HDTGSTQ 792 (807)
Q Consensus 786 HDt~R~~ 792 (807)
||+.|++
T Consensus 306 HD~~~~~ 312 (539)
T TIGR02456 306 HDELTLE 312 (539)
T ss_pred CCccCcc
Confidence 9997753
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.5e-39 Score=378.27 Aligned_cols=274 Identities=20% Similarity=0.275 Sum_probs=181.8
Q ss_pred CCccceeeeeeeeccCCCCC-CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCC-CCCCcccCCccCCCCCCHHHHHHHHH
Q 003613 504 TGTGFEILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGYMPRDLYNLSSRYGNIDELKDVVN 581 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~-hGYd~~Dy~~IDp~lGt~edfk~LV~ 581 (807)
..+.|+|++++|. +++++| |+|+||+++|+||++|||++|||+||++++++ |||++.||+.|||+|||.++|++||+
T Consensus 4 ~~v~Y~i~~~~f~-~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~ 82 (543)
T TIGR02403 4 KKVIYQIYPKSFY-DSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVS 82 (543)
T ss_pred cCEEEEEEhHHHh-cCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHH
Confidence 3445555555554 444333 89999999999999999999999999999875 69999999999999999999999999
Q ss_pred HHHHcCcEEEEeEeecccccccC---------cCCCcccccCCc-----CCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 003613 582 KFHDVGMKILGDVVLNHRCAHYQ---------NQNGVWNIFGGR-----LNWDDRAVVADDPHFQGRGNKSSGDNFHAAP 647 (807)
Q Consensus 582 aaH~~GIkVILD~V~NHtg~d~~---------~~~~~w~~~~g~-----~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lp 647 (807)
+||++||+||+|+|+||++.+|+ +++..|+.+... .+|....-...+......++++...+...+|
T Consensus 83 ~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~p 162 (543)
T TIGR02403 83 EAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQA 162 (543)
T ss_pred HHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCC
Confidence 99999999999999999998874 111223222110 1111100000000111234455555667899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchh-----------------------HHHHHHHHHh---cCCcEE
Q 003613 648 NIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-----------------------GGYVKDYLEA---TEPYFA 701 (807)
Q Consensus 648 dLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~-----------------------~~~i~~~~~~---~~~~~l 701 (807)
|||+.||+|+++|.+++++|+ +.||||||||+|+|+. .+|++++++. .+++|+
T Consensus 163 dln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l 241 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVT 241 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEE
Confidence 999999999999999999999 6899999999998764 2466666543 356999
Q ss_pred EeccccCCCcccccccccchhhHHHHHHHHh-hcCCCceecchhhHHHHHHHhhcC-------chhhhhhccCCCCCCcC
Q 003613 702 VGEYWDSLSYTYGEMDHNQDAHRQRIIDWIN-AASGTAGAFDVTTKGILHSALDRC-------EYWRLSDEKGKPPGVVG 773 (807)
Q Consensus 702 vGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~-~~~~~~svfDf~l~~~l~~al~~g-------~~~~l~~~~g~~~~l~~ 773 (807)
|||+|... ...+..|.. ....++++|+|.. .......+. +...+..........+.
T Consensus 242 vgE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 305 (543)
T TIGR02403 242 VGEMSSTT--------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQ 305 (543)
T ss_pred EEEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHhcc
Confidence 99999742 123344543 2345788888852 212211111 11112111100000010
Q ss_pred cCCCcceecccccCCCCCCCCC
Q 003613 774 WWPSRAVTFIENHDTGSTQVRS 795 (807)
Q Consensus 774 ~~P~~avtFveNHDt~R~~~~~ 795 (807)
......++|++|||+.|+...+
T Consensus 306 ~~~~~~~~fl~NHD~~R~~s~~ 327 (543)
T TIGR02403 306 AGGGWNALFWNNHDQPRAVSRF 327 (543)
T ss_pred ccCcceeeecCCCChhhHHHhc
Confidence 0122346799999999986544
No 9
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=6.7e-40 Score=349.63 Aligned_cols=253 Identities=25% Similarity=0.389 Sum_probs=172.0
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
|||+||++||||||+|||++|||+||++++ .+|||++.||++|||+|||++||++||++||++||+||+|+|+||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 789999999999999999999999999987 8899999999999999999999999999999999999999999999998
Q ss_pred cCcCCCccc----ccCCcCCCCCC--cccCCCCCCCCCCCCC---C---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003613 603 YQNQNGVWN----IFGGRLNWDDR--AVVADDPHFQGRGNKS---S---GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (807)
Q Consensus 603 ~~~~~~~w~----~~~g~~~w~~~--~~~~~~~~f~~~~~~~---~---~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e 670 (807)
+........ +...+..|.+. ........+.....+. . ..++..+|+||+.||+||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 742000000 01111222211 0000000000011110 0 24688999999999999999999999999 7
Q ss_pred cCccEEEEccccchhHHHHHHHHHhc----CCcEEEeccccCCCcccccccccchhhHHHHHHHH-hhcCCCceecchhh
Q 003613 671 IGYDGWRLDFVRGFWGGYVKDYLEAT----EPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWI-NAASGTAGAFDVTT 745 (807)
Q Consensus 671 ~GVDGfRlDaa~~f~~~~i~~~~~~~----~~~~lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl-~~~~~~~svfDf~l 745 (807)
.||||||+|+|+++..++++++.++. ++.+++||+|.... ..+..+. ........++++..
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcccc
Confidence 88999999999988888887776654 56999999998521 1111221 11222334677776
Q ss_pred HHHHHHHh---hcCc--hhhhhhccCCCCCCcCcCCCcceecccccCCCCCC
Q 003613 746 KGILHSAL---DRCE--YWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQ 792 (807)
Q Consensus 746 ~~~l~~al---~~g~--~~~l~~~~g~~~~l~~~~P~~avtFveNHDt~R~~ 792 (807)
........ ..+. ...+........... ..+...++|++|||+.|..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~nHD~~r~~ 276 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSSWQSSY-PDPYRAVNFLENHDTPRFA 276 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHS-TTGGGEEEESSHTTSSTHH
T ss_pred cccccchhhhhccccchhhhhhhhhhhhhhhh-cccceeeecccccccccch
Confidence 65555444 1111 112221110000000 1245789999999999964
No 10
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.5e-38 Score=368.00 Aligned_cols=184 Identities=20% Similarity=0.310 Sum_probs=140.4
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+|||+||+++||||++|||++|||+||++++. +|||++.||+.|||+|||.++|++||++||++||+||+|+|+||++.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 58999999999999999999999999999876 69999999999999999999999999999999999999999999999
Q ss_pred ccCc---------CCCcccccCC------cCCCCCCcccCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 003613 602 HYQN---------QNGVWNIFGG------RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (807)
Q Consensus 602 d~~~---------~~~~w~~~~g------~~~w~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~ 665 (807)
+|+. ++..|+.+.. ...|..... .....+. ..+.++...+...+||||+.||+|+++|+++++
T Consensus 109 ~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~ 187 (551)
T PRK10933 109 QHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFG-GSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCE 187 (551)
T ss_pred chhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCC-CccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHH
Confidence 8741 1222322111 001110000 0000011 112333334456899999999999999999999
Q ss_pred HHHHhcCccEEEEccccchhH-----------------------HHHHHHHHhc---CCcEEEeccccC
Q 003613 666 WLRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT---EPYFAVGEYWDS 708 (807)
Q Consensus 666 ~Wi~e~GVDGfRlDaa~~f~~-----------------------~~i~~~~~~~---~~~~lvGE~w~~ 708 (807)
+|+ ++||||||||+|+++.. ++++++++.. +++++|||+|..
T Consensus 188 ~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~ 255 (551)
T PRK10933 188 FWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSST 255 (551)
T ss_pred HHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCC
Confidence 999 79999999999987642 5677766542 247899999964
No 11
>PLN02784 alpha-amylase
Probab=100.00 E-value=3.2e-35 Score=344.59 Aligned_cols=163 Identities=27% Similarity=0.488 Sum_probs=148.7
Q ss_pred cccccccceecccCCCCCCCCCCCC-CCCC--CCCCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCc
Q 003613 47 CSFKKLQKITVSSSTSTSTSPATST-DTTP--VRPGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGK 123 (807)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~td~~~~ 123 (807)
..|+|+|||++|+|+++++.++.++ +.++ ..++.++|||++||.|++.|+|+|+|+|++|++++|++|+|+||+||+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~ 308 (894)
T PLN02784 229 GALGQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGD 308 (894)
T ss_pred CccccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCC
Confidence 5679999999999999999888765 4444 889999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeEEEEEEeCCccchhc
Q 003613 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (807)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~~T~f~~~~~~~~~~~~~i~~~~d~~~~~i~FVlk~~~~~~W~~ 203 (807)
||||||| |++..+||++||++|+|+||+. |+|||||||++.+++.. ..+.|++|+++.||+||||++ +|+|||
T Consensus 309 vvlHWgV--~k~~~~eW~~Pp~~~~P~~sv~-~~kA~eT~~~~~~~~~~---~~~~~~ld~~~~g~~FVLk~~-~g~W~~ 381 (894)
T PLN02784 309 VVVHWGV--CKDGAKTWEIPPEPHPPETSLF-KNKALQTMLQQKDDGNG---SSGLFSLDGELEGLLFVLKLN-EGTWLR 381 (894)
T ss_pred EEEEeEe--ccCCCCcccCCCCCCCCCccee-cccccccccccccCCCc---ceEEEecCCCeeEEEEEEECC-CCchhh
Confidence 9999999 9998899999999999999985 99999999999876633 445678899999999999998 668999
Q ss_pred cCCcceeeecccc
Q 003613 204 HRGRDFKVPLVDY 216 (807)
Q Consensus 204 ~~G~df~v~l~~~ 216 (807)
|+|+||||||+.+
T Consensus 382 ~~G~DF~Ipl~~~ 394 (894)
T PLN02784 382 CNGNDFYVPLLTS 394 (894)
T ss_pred cCCccEEEeCCch
Confidence 9999999999855
No 12
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.7e-34 Score=333.72 Aligned_cols=177 Identities=24% Similarity=0.262 Sum_probs=142.8
Q ss_pred CCCCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 003613 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (807)
..+.++|+++++.|.- .|+|+||+++||||++||||+|||+||++.+ .+|||++.||++|+++|||.++||+|
T Consensus 91 ~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~l 165 (542)
T TIGR02402 91 LEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKAL 165 (542)
T ss_pred ccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHH
Confidence 3667899999999962 6899999999999999999999999998876 57999999999999999999999999
Q ss_pred HHHHHHcCcEEEEeEeecccccccCcCCCccc-ccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---H
Q 003613 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWN-IFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---F 655 (807)
Q Consensus 580 V~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~-~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np---~ 655 (807)
|++||++||+||||+|+||++.++. |. .+. ++|.. ...++|+ +++|+.++ +
T Consensus 166 V~~aH~~Gi~VilD~V~NH~~~~~~-----~~~~~~--------------~y~~~--~~~~~wg----~~~n~~~~~~~~ 220 (542)
T TIGR02402 166 VDAAHGLGLGVILDVVYNHFGPEGN-----YLPRYA--------------PYFTD--RYSTPWG----AAINFDGPGSDE 220 (542)
T ss_pred HHHHHHCCCEEEEEEccCCCCCccc-----cccccC--------------ccccC--CCCCCCC----CccccCCCcHHH
Confidence 9999999999999999999986531 11 111 11111 1112222 47899998 9
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEccccch--------hHHHHHHHHHhcCC---cEEEeccccC
Q 003613 656 VRKDIKEWLCWLRNEIGYDGWRLDFVRGF--------WGGYVKDYLEATEP---YFAVGEYWDS 708 (807)
Q Consensus 656 Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f--------~~~~i~~~~~~~~~---~~lvGE~w~~ 708 (807)
|+++|++++++|++++||||||+|+++++ +.++.+.+++..++ +++|||.|..
T Consensus 221 vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~ 284 (542)
T TIGR02402 221 VRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLN 284 (542)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCC
Confidence 99999999999999999999999999754 44444444444455 8999999854
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=5.4e-34 Score=337.98 Aligned_cols=262 Identities=18% Similarity=0.245 Sum_probs=180.0
Q ss_pred CCCCccceeeeeeeeccCCC----CCCcHHHHHHh--HHHHHHcCCCEEEECCCCCCCC-----------CCCCCcccCC
Q 003613 502 PGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESVS-----------PEGYMPRDLY 564 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~----~GGdl~GI~ek--LdYLk~LGvt~I~L~PIfes~s-----------~hGYd~~Dy~ 564 (807)
..+.++|++++++|.-...+ ..|+|+||+++ |||||+||||+|||+||+++.+ +|||++.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 35678899999999742221 24899999996 9999999999999999998753 5999999999
Q ss_pred ccCCCC---CCHHHHHHHHHHHHHcCcEEEEeEeecccccccCc-CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCC
Q 003613 565 NLSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN-QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSG 640 (807)
Q Consensus 565 ~IDp~l---Gt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~-~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~ 640 (807)
+||++| |+.+|||+||++||++||+||||+|+||++..+.. +...|..... ..|.... .+ ..+.+..+
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~-~~yy~~~--~~-----~~~~~~~~ 304 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDN-ASYYRLQ--PD-----DKRYYIND 304 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCC-CcceEec--CC-----CCceecCC
Confidence 999999 67899999999999999999999999999976531 1111111100 0110000 00 00111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchh---------HHHHHHHHHh--cCCcEEEeccccCC
Q 003613 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW---------GGYVKDYLEA--TEPYFAVGEYWDSL 709 (807)
Q Consensus 641 ~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~---------~~~i~~~~~~--~~~~~lvGE~w~~~ 709 (807)
....+++|+++|+|+++|++++++|++++||||||+|+|.++. ..+++++.+. .+++++|||.|+.+
T Consensus 305 --~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 305 --TGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIG 382 (688)
T ss_pred --CCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCC
Confidence 1234689999999999999999999999999999999998653 4677777663 24589999999853
Q ss_pred C--cccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCc--hhhhhhccCCCCCCc---CcCCCcceec
Q 003613 710 S--YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE--YWRLSDEKGKPPGVV---GWWPSRAVTF 782 (807)
Q Consensus 710 ~--~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~--~~~l~~~~g~~~~l~---~~~P~~avtF 782 (807)
+ +..|. ....-+.||..++..++.++.+.. ...+...+.....+. ...|...|||
T Consensus 383 ~~~~~~~~------------------~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iNy 444 (688)
T TIGR02100 383 PGGYQVGN------------------FPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASINF 444 (688)
T ss_pred CCcccccC------------------CCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEEE
Confidence 2 11110 011135677777777777765442 122322221111111 1356788999
Q ss_pred ccccCCCCC
Q 003613 783 IENHDTGST 791 (807)
Q Consensus 783 veNHDt~R~ 791 (807)
|++||+.+.
T Consensus 445 v~~HD~~tl 453 (688)
T TIGR02100 445 VTAHDGFTL 453 (688)
T ss_pred EeCCCCchH
Confidence 999999773
No 14
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.1e-33 Score=349.38 Aligned_cols=389 Identities=16% Similarity=0.147 Sum_probs=235.5
Q ss_pred cccccccCccccCCCcceeEEEe-cCccceeEEEEEcCCccccccCCc-ceEEeCCCCCCCCCcccccccccCCCccccc
Q 003613 345 NKALRTLLQPKEGGKGCSRLFTV-DEEFAGFLFVLKLNENTWLKCMEN-DFYIPLTSSSCLPAESVQEMLIPGKAEEATQ 422 (807)
Q Consensus 345 ~~a~eTpf~~~~~~~~~~~~~~l-~~~~~g~~FVl~~~~~~W~k~~g~-df~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (807)
.+-+..|||+...+. -+.|.| ...-..+.+||..+ . ++. ...++|...+. ..|.+ ...+..
T Consensus 9 ~~g~~~plGA~~~~~--gv~F~v~ap~A~~V~L~lf~~-~-----~~~~~~~~~l~~~~g-------~vW~~--~i~~~~ 71 (1221)
T PRK14510 9 SPGFREPLGAVPDGG--GVNLALFSGAAERVEFCLFDL-W-----GVREEARIKLPGRTG-------DVWHG--FIVGVG 71 (1221)
T ss_pred CCCCCCCCceEEECC--eEEEEEECCCCCEEEEEEEEC-C-----CCCeeEEEECCCCcC-------CEEEE--EEccCC
Confidence 345677899988766 467888 66666788888765 1 111 23567654332 13322 111111
Q ss_pred ccccchhhHHHHHHHhhcccccccchhhcccchhhhhhhhHHhhhhhhhh-hhcccccccccccccc------cccc---
Q 003613 423 EVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEA-YSIFRTTAPTFFEEAA------VELE--- 492 (807)
Q Consensus 423 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~tv~~~~~~~pav~-YqIFp~~~drF~~~~~------~~~~--- 492 (807)
.+ ..|-+.+... +. ...+...+...++++.|......|... =.||+ +||..+.. ...|
T Consensus 72 -~g-~~Ygyrv~g~------~~-p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~---~~~~~~~~~~~d~~~~~pk~v 139 (1221)
T PRK14510 72 -PG-ARYGNRQEGP------GG-PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFD---DRFFNGDEDLTDSAVLVPKVV 139 (1221)
T ss_pred -CC-cEEEEEeccC------CC-cccccccCCCeEeeCCCCceEeCCcccCccccc---ccccCCCcccccCcccCccce
Confidence 11 1344444310 00 011222334567888887765544110 12888 88864321 1101
Q ss_pred -------cCCCCCCCCCCCCccceeeeeeeeccCCCCCCcHHHHHHhHH------HHHHcCCCEEEECCCCCCCC-----
Q 003613 493 -------ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESVS----- 554 (807)
Q Consensus 493 -------~~~p~~~~~~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLd------YLk~LGvt~I~L~PIfes~s----- 554 (807)
....+......+..+|++++++|....+..||+++|+.++|+ |||+||||+|||+||+++.+
T Consensus 140 v~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~ 219 (1221)
T PRK14510 140 VPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLP 219 (1221)
T ss_pred eecccccCCCCCCCCCcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccc
Confidence 011111223345678999999997543444666666666665 99999999999999998753
Q ss_pred ------CCCCCcccCCccCCCCC--CHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccC
Q 003613 555 ------PEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVA 626 (807)
Q Consensus 555 ------~hGYd~~Dy~~IDp~lG--t~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~ 626 (807)
||||++.||+++||+|| +.+|||+||++||++||+||||+|+|||+.++... ..+. +.+ ..
T Consensus 220 ~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~-p~~~-~~~---~d------ 288 (1221)
T PRK14510 220 QLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG-PTLS-AYG---SD------ 288 (1221)
T ss_pred cccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC-Cccc-ccC---CC------
Confidence 47899999999999999 99999999999999999999999999999764210 0000 000 00
Q ss_pred CCCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccch---hHHHHHHH---HHh-
Q 003613 627 DDPHFQ----GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---WGGYVKDY---LEA- 695 (807)
Q Consensus 627 ~~~~f~----~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f---~~~~i~~~---~~~- 695 (807)
..++|. ...++.++++...++ |+++|+|+++|++++++|++ +||||||||+|.++ ..+|++.+ +++
T Consensus 289 ~~~yy~~~~~~~~~y~~~~G~gn~~--n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai 365 (1221)
T PRK14510 289 NSPYYRLEPGNPKEYENWWGCGNLP--NLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAM 365 (1221)
T ss_pred CCCceEecCCCCCcccCCCCCCCcc--ccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHh
Confidence 001111 112334444555554 45599999999999999997 99999999999877 55554432 233
Q ss_pred cCCcE-----EEeccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCch--hhhhhccCCC
Q 003613 696 TEPYF-----AVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEY--WRLSDEKGKP 768 (807)
Q Consensus 696 ~~~~~-----lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~--~~l~~~~g~~ 768 (807)
.++.+ +|||.|+..+. .|.... + ...-+.||++++..++.++.+... ..+...+...
T Consensus 366 ~~d~~l~~~~ligE~Wd~~~~-----~~~~g~-------f----~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs 429 (1221)
T PRK14510 366 DQDPVLRRLKMIAEVWDDGLG-----GYQYGK-------F----PQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGS 429 (1221)
T ss_pred CCCcCcccCcEEEecccCCCC-----ccccCC-------C----CcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCc
Confidence 33444 49999986321 011000 0 001256889999999888865422 2222222111
Q ss_pred CCCc---CcCCCcceecccccCCCCCC
Q 003613 769 PGVV---GWWPSRAVTFIENHDTGSTQ 792 (807)
Q Consensus 769 ~~l~---~~~P~~avtFveNHDt~R~~ 792 (807)
..+. ...|...||||+|||+.|..
T Consensus 430 ~d~~~~~~~~~~~~iNfi~~HD~~rl~ 456 (1221)
T PRK14510 430 ADIFPHRRRNFSRSINFITAHDGFTLL 456 (1221)
T ss_pred HhhcCccCCCcccceEEEeeCCchHHH
Confidence 1111 13466789999999998864
No 15
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1e-33 Score=333.44 Aligned_cols=264 Identities=19% Similarity=0.271 Sum_probs=173.1
Q ss_pred CCCccceeeeeeeeccCCCCC----CcHH-----------HHHHhHHHHHHcCCCEEEECCCCCCCC----------CCC
Q 003613 503 GTGTGFEILCQGFNWESHKSG----RWYM-----------ELKEKATELSSLGFSVIWLPPPTESVS----------PEG 557 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~G----Gdl~-----------GI~ekLdYLk~LGvt~I~L~PIfes~s----------~hG 557 (807)
.+.++|++++++|.-+. ++| |.|. ||+++||||++||||+|||+||++..+ +||
T Consensus 126 ~~~vIYElhv~~ft~~~-~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wG 204 (605)
T TIGR02104 126 EDAIIYELHIRDFSIHE-NSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWG 204 (605)
T ss_pred hHcEEEEEecchhccCC-CCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCC
Confidence 45678899998887422 211 4444 455569999999999999999998764 599
Q ss_pred CCcccCCccCCCCCC--------HHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCC
Q 003613 558 YMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDP 629 (807)
Q Consensus 558 Yd~~Dy~~IDp~lGt--------~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~ 629 (807)
|++.||++++++||+ .+|||+||++||++||+||||+|+||++..... .|..... .|...
T Consensus 205 Y~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~---~f~~~~~--~~~~~------- 272 (605)
T TIGR02104 205 YDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES---PFEKTVP--GYYYR------- 272 (605)
T ss_pred CCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC---cccCCCC--CeeEE-------
Confidence 999999999999987 489999999999999999999999999853211 1110000 01000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHh----cCCcEEEecc
Q 003613 630 HFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA----TEPYFAVGEY 705 (807)
Q Consensus 630 ~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~----~~~~~lvGE~ 705 (807)
....+.+..+.++ ..++|+++|+||++|++++++|++++||||||+|+|.++..++++++.++ .++++++||.
T Consensus 273 -~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 273 -YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred -ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 0001111111222 24789999999999999999999999999999999988777776666543 3459999999
Q ss_pred ccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhc--------Cc---hhhhhhcc-CCC--C--
Q 003613 706 WDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDR--------CE---YWRLSDEK-GKP--P-- 769 (807)
Q Consensus 706 w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~--------g~---~~~l~~~~-g~~--~-- 769 (807)
|+..+.+. ..+. .....+ .... ..+.||+.++..++....+ +. ...+.... +.. .
T Consensus 350 w~~~~~~~----~~~~---~~~~~~-~~~~-~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~ 420 (605)
T TIGR02104 350 WDLGTPLP----PEQK---ATKANA-YQMP-GIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAV 420 (605)
T ss_pred CCCCCCcc----hhhh---hhhhcc-CCCC-ceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhccc
Confidence 98643211 0000 000000 0011 2568899998888743211 11 11222211 100 0
Q ss_pred CCcCcCCCcceecccccCCCCC
Q 003613 770 GVVGWWPSRAVTFIENHDTGST 791 (807)
Q Consensus 770 ~l~~~~P~~avtFveNHDt~R~ 791 (807)
......|...|+||+|||+.|.
T Consensus 421 ~~~~~~p~~~vnyl~~HD~~~l 442 (605)
T TIGR02104 421 KPSALDPSQSINYVECHDNHTL 442 (605)
T ss_pred ccccCChhheEEEEEecCCCCH
Confidence 0112367788999999999886
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.3e-33 Score=327.52 Aligned_cols=261 Identities=18% Similarity=0.235 Sum_probs=174.8
Q ss_pred CCCCccceeeeeeeeccCCCC----CCcHHHHHH--hHHHHHHcCCCEEEECCCCCCC-----------CCCCCCcccCC
Q 003613 502 PGTGTGFEILCQGFNWESHKS----GRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLY 564 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~~----GGdl~GI~e--kLdYLk~LGvt~I~L~PIfes~-----------s~hGYd~~Dy~ 564 (807)
..+.++|++++++|.-...+. -|.|.|+++ +|||||+||||+|||+||+++. .+|||++.|||
T Consensus 148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yf 227 (658)
T PRK03705 148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMF 227 (658)
T ss_pred ccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccc
Confidence 457789999999997311111 278999997 4999999999999999999864 36899999999
Q ss_pred ccCCCCCCH-----HHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCC
Q 003613 565 NLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSS 639 (807)
Q Consensus 565 ~IDp~lGt~-----edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~ 639 (807)
++|++|||. +|||+||++||++||+||||+|+||++.... .+.+..+.+.. .. ....+...+.+..
T Consensus 228 a~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d---~~----~yy~~~~~g~~~~ 298 (658)
T PRK03705 228 ALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGID---NR----SYYWIREDGDYHN 298 (658)
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCC---Cc----cceEECCCCCcCC
Confidence 999999995 7999999999999999999999999986421 11111111100 00 0000011122222
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchh------H--HHHHHHHHh--cCCcEEEeccccCC
Q 003613 640 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW------G--GYVKDYLEA--TEPYFAVGEYWDSL 709 (807)
Q Consensus 640 ~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~------~--~~i~~~~~~--~~~~~lvGE~w~~~ 709 (807)
+.+ ..++||+++|+|+++|++++++|++++||||||+|+|.++. . .++++++.. .++++++||.|+.+
T Consensus 299 ~~g--~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 299 WTG--CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDIG 376 (658)
T ss_pred CCC--ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecccCC
Confidence 222 24689999999999999999999999999999999998653 2 244554431 24589999999853
Q ss_pred C--cccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCch--hhhhhcc-CCCC--CCcCcCCCcceec
Q 003613 710 S--YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEY--WRLSDEK-GKPP--GVVGWWPSRAVTF 782 (807)
Q Consensus 710 ~--~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~--~~l~~~~-g~~~--~l~~~~P~~avtF 782 (807)
. +..|. ....-+.|+..++..++..+.+++. ..+...+ +... ......|...+||
T Consensus 377 ~~~~~~g~------------------~~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siNy 438 (658)
T PRK03705 377 PGGYQVGN------------------FPPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASINL 438 (658)
T ss_pred CChhhhcC------------------CCcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEEE
Confidence 2 11111 0111346677777777766544321 1111111 1100 0012367889999
Q ss_pred ccccCCCCC
Q 003613 783 IENHDTGST 791 (807)
Q Consensus 783 veNHDt~R~ 791 (807)
|++||+.+.
T Consensus 439 v~~HD~~TL 447 (658)
T PRK03705 439 VTAHDGFTL 447 (658)
T ss_pred EEeCCCccH
Confidence 999998654
No 17
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=3.9e-33 Score=316.83 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=178.4
Q ss_pred ceeeeeeeeccCCCCCCcHHHHHHhHH-HHHHcCCCEEEECCCCC-C-CCCCCCCcccCCccCCCCCCHHHHHHHHHHHH
Q 003613 508 FEILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-S-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 584 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~GGdl~GI~ekLd-YLk~LGvt~I~L~PIfe-s-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH 584 (807)
+.+++-.|. |+.+ +|+|+||+++|| ||++| |++|||+|+|+ + .+.+||++.||++|||+|||++||++|++
T Consensus 3 n~~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~--- 76 (495)
T PRK13840 3 NKVQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK--- 76 (495)
T ss_pred CceEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh---
Confidence 356677776 6665 489999999999 59999 99999999994 4 35799999999999999999999999985
Q ss_pred HcCcEEEEeEeecccccccCc-----CCCcccccCCcCCCCCC-----cccCC---------CCCC-----C-CCCCCCC
Q 003613 585 DVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDR-----AVVAD---------DPHF-----Q-GRGNKSS 639 (807)
Q Consensus 585 ~~GIkVILD~V~NHtg~d~~~-----~~~~w~~~~g~~~w~~~-----~~~~~---------~~~f-----~-~~~~~~~ 639 (807)
||+||+|+|+||||..|+. .++.=.++.+++-|.+. ....+ .+.| . +...++.
T Consensus 77 --giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w 154 (495)
T PRK13840 77 --THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVW 154 (495)
T ss_pred --CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEe
Confidence 9999999999999998741 11111111111112110 00000 0101 1 1112233
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhH-------------HHHHHHHHhc--CCcEEEec
Q 003613 640 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-------------GYVKDYLEAT--EPYFAVGE 704 (807)
Q Consensus 640 ~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~-------------~~i~~~~~~~--~~~~lvGE 704 (807)
..+...+||||+.||+|+++|.+++++|+ +.|||||||||+.++|+ ++++++++.. ....+|+|
T Consensus 155 ~tF~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~E 233 (495)
T PRK13840 155 TTFTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVE 233 (495)
T ss_pred ccCCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEe
Confidence 33567899999999999999999999999 78999999999975544 2455554433 24678999
Q ss_pred cccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceeccc
Q 003613 705 YWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (807)
Q Consensus 705 ~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFve 784 (807)
+|.... . .....++++.+|||+|...+..++..++...|.+.+.. .|..+.|||+
T Consensus 234 i~~y~~----~--------------~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~ 288 (495)
T PRK13840 234 IHSYYK----T--------------QIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLD 288 (495)
T ss_pred CccccC----c--------------cccccccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeee
Confidence 986411 0 00012467899999999999999988877666665422 3777799999
Q ss_pred ccCCCCC
Q 003613 785 NHDTGST 791 (807)
Q Consensus 785 NHDt~R~ 791 (807)
|||.-..
T Consensus 289 ~HDgIgl 295 (495)
T PRK13840 289 THDGIGI 295 (495)
T ss_pred cCCCCCc
Confidence 9997654
No 18
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=7e-33 Score=337.83 Aligned_cols=265 Identities=21% Similarity=0.337 Sum_probs=181.8
Q ss_pred CCCCccceeeeeeeeccCCC------CCCcHHHHHHhHHHHHHcCCCEEEECCCCCC--------------------CCC
Q 003613 502 PGTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSP 555 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~------~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes--------------------~s~ 555 (807)
..+.++|++++++|..+... .-|+|+||+++|+|||+||||+|||+|||+. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 45779999999999865431 1389999999999999999999999999852 124
Q ss_pred CCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCC
Q 003613 556 EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVAD 627 (807)
Q Consensus 556 hGYd~~Dy~~IDp~lGt--------~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~ 627 (807)
|||+|.+||.++++||+ .+|||+||++||++||+||||+|+||++..+. +.... ..|..+.
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~-----f~~~~--p~Yy~~~---- 597 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI-----FEDLE--PNYYHFM---- 597 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc-----ccccC--CCceEee----
Confidence 99999999999999998 48999999999999999999999999987642 10000 0010000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHh----cCCcEEEe
Q 003613 628 DPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA----TEPYFAVG 703 (807)
Q Consensus 628 ~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~----~~~~~lvG 703 (807)
...+..... + ...+++.++++||++|++++++|+++|||||||||++.++..++++.+..+ .++++++|
T Consensus 598 ----~~~G~~~~~--~-~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liG 670 (1111)
T TIGR02102 598 ----DADGTPRTS--F-GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIG 670 (1111)
T ss_pred ----CCCCCcccc--c-CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEE
Confidence 001111111 1 135789999999999999999999999999999999987766666555433 34599999
Q ss_pred ccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhc--------Cch---hhhhhcc-CCCCCC
Q 003613 704 EYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDR--------CEY---WRLSDEK-GKPPGV 771 (807)
Q Consensus 704 E~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~--------g~~---~~l~~~~-g~~~~l 771 (807)
|.|+.. .|...+... .....|+.... ..+.|+..++..++..+.. |.. ..+.... +.....
T Consensus 671 E~W~~~---~g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~ 743 (1111)
T TIGR02102 671 EGWRTY---AGDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNF 743 (1111)
T ss_pred eccccc---CCCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccc
Confidence 999841 111111100 01123443222 3678999988888853321 111 1222111 111111
Q ss_pred cCcCCCcceecccccCCCCC
Q 003613 772 VGWWPSRAVTFIENHDTGST 791 (807)
Q Consensus 772 ~~~~P~~avtFveNHDt~R~ 791 (807)
....|.+.|+||+|||+.+.
T Consensus 744 ~~~~P~~~VnYV~aHDn~TL 763 (1111)
T TIGR02102 744 EADSPGDVVQYIAAHDNLTL 763 (1111)
T ss_pred ccCCcccEEEEEecCCCCch
Confidence 12478899999999999886
No 19
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.5e-32 Score=325.08 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=142.7
Q ss_pred CCCccceeeeeeeeccCCCCC-CcHHHHHHhH-HHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHH
Q 003613 503 GTGTGFEILCQGFNWESHKSG-RWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKD 578 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~G-Gdl~GI~ekL-dYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~ 578 (807)
....+|++++++|.-. ..++ |+|++|+++| |||++||||+|||+||++++ .+|||++.|||+|+|+|||.++||+
T Consensus 146 ~~~~iYe~hv~~f~~~-~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~ 224 (633)
T PRK12313 146 RPISIYEVHLGSWKRN-EDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMY 224 (633)
T ss_pred CCceEEEEehhccccC-CCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHH
Confidence 3457899999998733 2222 7899999995 99999999999999999987 4799999999999999999999999
Q ss_pred HHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 579 LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
||++||++||+||||+|+||++.++.. +..+.+...|... ++ ...+... | +.++||+.+|+||+
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~~~-----~~----~~~~~~~--w-~~~~~n~~~~~vr~ 288 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYEYQ-----DP----RRAENPD--W-GALNFDLGKNEVRS 288 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----ccccCCCcceeec-----CC----CCCcCCC--C-CCcccCCCCHHHHH
Confidence 999999999999999999999976421 1111211111000 00 0011111 1 24689999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccc---------------------------hhHHHHHHHHHhcCCcEEEeccccC
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRG---------------------------FWGGYVKDYLEATEPYFAVGEYWDS 708 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~---------------------------f~~~~i~~~~~~~~~~~lvGE~w~~ 708 (807)
+|++++++|++++||||||+|++.+ ||.++.+.+++..+++++|||.|..
T Consensus 289 ~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~ 365 (633)
T PRK12313 289 FLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTA 365 (633)
T ss_pred HHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 9999999999999999999998853 3344333333344569999998854
No 20
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=7e-33 Score=326.43 Aligned_cols=217 Identities=20% Similarity=0.216 Sum_probs=156.5
Q ss_pred CCccceeeeeeeeccCCCCCCcHHHHHHhH-HHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHH
Q 003613 504 TGTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (807)
..++|++++++|. .+|+|++|+++| |||++||||+|||+||++++ .+|||++.|||+|+++|||.++||+||
T Consensus 138 ~~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV 212 (613)
T TIGR01515 138 PVSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFV 212 (613)
T ss_pred CceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHH
Confidence 3468999999885 248899999997 99999999999999999986 479999999999999999999999999
Q ss_pred HHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 003613 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (807)
Q Consensus 581 ~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i 660 (807)
++||++||+||||+|+||++.++.. +..+.+...|... .+ .... ...| +.+++|+.+|+||++|
T Consensus 213 ~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~-----~~----~~~~--~~~w-~~~~~~~~~~~Vr~~l 276 (613)
T TIGR01515 213 DACHQAGIGVILDWVPGHFPKDDHG----LAEFDGTPLYEHK-----DP----RDGE--HWDW-GTLIFDYGRPEVRNFL 276 (613)
T ss_pred HHHHHCCCEEEEEecccCcCCccch----hhccCCCcceecc-----CC----ccCc--CCCC-CCceecCCCHHHHHHH
Confidence 9999999999999999999976421 1112211111100 00 0001 1112 3579999999999999
Q ss_pred HHHHHHHHHhcCccEEEEccccc----------------------------hhHHHHHHHHHhcCCcEEEeccccCCCcc
Q 003613 661 KEWLCWLRNEIGYDGWRLDFVRG----------------------------FWGGYVKDYLEATEPYFAVGEYWDSLSYT 712 (807)
Q Consensus 661 ~~~l~~Wi~e~GVDGfRlDaa~~----------------------------f~~~~i~~~~~~~~~~~lvGE~w~~~~~~ 712 (807)
++++++|++++||||||||++.+ ||+++.+.+++..+++++|||.+.+.+..
T Consensus 277 ~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~ 356 (613)
T TIGR01515 277 VANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGV 356 (613)
T ss_pred HHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccc
Confidence 99999999999999999999753 44444444333446699999987532110
Q ss_pred cccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhc
Q 003613 713 YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDR 755 (807)
Q Consensus 713 ~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~ 755 (807)
......++-+++..+++.+...++.++..
T Consensus 357 --------------~~~~~~gg~gfd~~w~~~~~~~~~~~~~~ 385 (613)
T TIGR01515 357 --------------TRPTDEGGLGFHYKWNMGWMHDTLDYMST 385 (613)
T ss_pred --------------cccccCCcCCcCeeeCchHHHHHHHHHhh
Confidence 00111123345666666666666666543
No 21
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=321.44 Aligned_cols=185 Identities=23% Similarity=0.376 Sum_probs=142.9
Q ss_pred hhhhhcccccccccccccccccccCCCCCCCCCCCCccceeeeeeeeccCCCCC-CcHHHHHHhHHHHHHcCCCEEEECC
Q 003613 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPP 548 (807)
Q Consensus 470 av~YqIFp~~~drF~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGvt~I~L~P 548 (807)
+++||||| +||..++... .+.+ +| |||+||+++||||++|||++|||+|
T Consensus 1 ~viyqi~~---~~f~d~~~~~-----------------------~~~~----~G~Gdl~Gi~~~LdYl~~LGv~aiwl~P 50 (505)
T COG0366 1 AVIYQIYP---DRFADSNGSN-----------------------GPDY----DGGGDLKGITEKLDYLKELGVDAIWLSP 50 (505)
T ss_pred CcEEEEec---hhhcCCCCCC-----------------------ccCC----CCcccHHhHHHhhhHHHHhCCCEEEeCC
Confidence 57899999 9998643311 1111 14 9999999999999999999999999
Q ss_pred CCCC-CCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCc------CCCcccccCCcCCCCC
Q 003613 549 PTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN------QNGVWNIFGGRLNWDD 621 (807)
Q Consensus 549 Ifes-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~------~~~~w~~~~g~~~w~~ 621 (807)
|+++ .++|||++.||+.|||+|||+++|++||++||++||+||+|+|+||++..|.. ....... ...+.|..
T Consensus 51 i~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~-~~~~~W~~ 129 (505)
T COG0366 51 IFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKR-SDYYIWRD 129 (505)
T ss_pred CCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCccc-CCCceEcc
Confidence 9999 78999999999999999999999999999999999999999999999999741 0000000 11222322
Q ss_pred Ccc----------cCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhH
Q 003613 622 RAV----------VADDPHF--QGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (807)
Q Consensus 622 ~~~----------~~~~~~f--~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~ 686 (807)
... ......+ ...+.++.+.+...+|+||+.||+|++++.+++++|+ +.||||||+|++++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~ 205 (505)
T COG0366 130 PDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISK 205 (505)
T ss_pred CcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhcc
Confidence 100 0001111 1133455566778899999999999999999999999 69999999999998876
No 22
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.98 E-value=1e-31 Score=322.10 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=141.8
Q ss_pred CCCccceeeeeeeeccCCCCC-CcHHHHHHhH-HHHHHcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHHHH
Q 003613 503 GTGTGFEILCQGFNWESHKSG-RWYMELKEKA-TELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKD 578 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~G-Gdl~GI~ekL-dYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~ 578 (807)
...++|++++++|.-..++++ |+|+||+++| ||||+||||+|||+||++.+. +|||++.||++|+|+|||.++||+
T Consensus 240 ~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~ 319 (726)
T PRK05402 240 APISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRY 319 (726)
T ss_pred CCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHH
Confidence 446789999999974322222 7999999996 999999999999999998764 799999999999999999999999
Q ss_pred HHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 579 LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
||++||++||+||||+|+||++.++.. +..+++...|... ++ ..+... .|. ..++|+.+|+||+
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~~-----~~---~~~~~~---~w~-~~~~n~~~~~v~~ 383 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEHA-----DP---REGEHP---DWG-TLIFNYGRNEVRN 383 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceecc-----CC---cCCccC---CCC-CccccCCCHHHHH
Confidence 999999999999999999999876421 1112221111100 00 001111 111 2378999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccc----------------------------hhHHHHHHHHHhcCCcEEEecccc
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRG----------------------------FWGGYVKDYLEATEPYFAVGEYWD 707 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~----------------------------f~~~~i~~~~~~~~~~~lvGE~w~ 707 (807)
+|++++++|++++||||||||++.+ ||+++.+.+++..+++++|||.+.
T Consensus 384 ~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~ 460 (726)
T PRK05402 384 FLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEEST 460 (726)
T ss_pred HHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 9999999999999999999998743 344433333333456999999764
No 23
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.98 E-value=3.1e-32 Score=307.85 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=178.5
Q ss_pred eeeeeeeeccCCCCC-CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC
Q 003613 509 EILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG 587 (807)
Q Consensus 509 ~v~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~G 587 (807)
.+++.+|. |+.++| |+|+|++++ ||++ ||++|||+|+|+++++|||++.||++|||+|||++||++|+++
T Consensus 2 ~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~----- 72 (470)
T TIGR03852 2 KAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK----- 72 (470)
T ss_pred CceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----
Confidence 45677776 777655 677777777 9999 7999999999999999999999999999999999999999997
Q ss_pred cEEEEeEeecccccccC-----------cCCCcccc-cCCcCCCCCCccc----------CCCC---C--C-CCCCCCCC
Q 003613 588 MKILGDVVLNHRCAHYQ-----------NQNGVWNI-FGGRLNWDDRAVV----------ADDP---H--F-QGRGNKSS 639 (807)
Q Consensus 588 IkVILD~V~NHtg~d~~-----------~~~~~w~~-~~g~~~w~~~~~~----------~~~~---~--f-~~~~~~~~ 639 (807)
||||+|+|+||||..|+ ++...|+. +.. .|.+.... ...+ . + .+.+.++.
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~--~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w 150 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKD--FWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVW 150 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEeccc--ccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEE
Confidence 89999999999999873 11222332 110 02211000 0011 1 1 12234455
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhH--------------HHHHHHHHh--cCCcEEEe
Q 003613 640 GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--------------GYVKDYLEA--TEPYFAVG 703 (807)
Q Consensus 640 ~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~--------------~~i~~~~~~--~~~~~lvG 703 (807)
..+...+||||+.||.|+++|.+++++|+ +.|||||||||+..+|+ ++++.+++. .++++++|
T Consensus 151 ~tF~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~ 229 (470)
T TIGR03852 151 NTFGEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILP 229 (470)
T ss_pred ccCCccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEe
Confidence 56778999999999999999999999999 89999999999953332 234444442 24599999
Q ss_pred ccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecc
Q 003613 704 EYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (807)
Q Consensus 704 E~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFv 783 (807)
|+++..++. + ..++..+.+|||++...+..++..++...+.+.+.. .|...+|||
T Consensus 230 E~~~~~~~~-----------------~-~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~-------~p~~~~nfL 284 (470)
T TIGR03852 230 EIHEHYTIQ-----------------F-KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRK-------SPMKQFTTL 284 (470)
T ss_pred Hhhhhcccc-----------------c-ccccceeEEccCccchhhHHHhhccCHHHHHHHHHh-------CcccceEEe
Confidence 998632210 0 112456889999999999999988887777776432 344558999
Q ss_pred cccCCC
Q 003613 784 ENHDTG 789 (807)
Q Consensus 784 eNHDt~ 789 (807)
+|||--
T Consensus 285 ~sHDgi 290 (470)
T TIGR03852 285 DTHDGI 290 (470)
T ss_pred ecCCCC
Confidence 999964
No 24
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=306.26 Aligned_cols=209 Identities=32% Similarity=0.511 Sum_probs=166.4
Q ss_pred CCCCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHH
Q 003613 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVV 580 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (807)
......|+|+.++|.|+....-|+++||.+|||||++|||++|||+||+++.. +|||++.||+.|+|+|||+++|++|+
T Consensus 15 W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li 94 (545)
T KOG0471|consen 15 WKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELI 94 (545)
T ss_pred hhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHH
Confidence 35566788888888865544448999999999999999999999999999987 59999999999999999999999999
Q ss_pred HHHHHcCcEEEEeEeecccccccC------cCC-C--ccccc-CC----------cCCCCCCcccCCCCCCCCCCCCCCC
Q 003613 581 NKFHDVGMKILGDVVLNHRCAHYQ------NQN-G--VWNIF-GG----------RLNWDDRAVVADDPHFQGRGNKSSG 640 (807)
Q Consensus 581 ~aaH~~GIkVILD~V~NHtg~d~~------~~~-~--~w~~~-~g----------~~~w~~~~~~~~~~~f~~~~~~~~~ 640 (807)
+++|++||+||+|+|+||++..+. ..+ + .|+++ .+ +.+|.+.......+....+.+++.+
T Consensus 95 ~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~ 174 (545)
T KOG0471|consen 95 LAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLG 174 (545)
T ss_pred HHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceecc
Confidence 999999999999999999996543 111 1 12221 11 1334333333334444556778888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCccEEEEccccchhHHHHHHHHHhcCCcEEEeccccCCCcc
Q 003613 641 DNFHAAPNIDHSQDFVRKDIKEWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT 712 (807)
Q Consensus 641 ~~~~~lpdLn~~np~Vr~~i~~~l~-~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~~~~~lvGE~w~~~~~~ 712 (807)
.+...+||||++||.|++.|.++++ +|. +.|+||||+|+++++...+.. ..-...+.+.+||.|++..+.
T Consensus 175 ~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~ 245 (545)
T KOG0471|consen 175 QFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYV 245 (545)
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchh
Confidence 8889999999999999999999999 666 999999999999998877655 233446789999999875543
No 25
>PRK12568 glycogen branching enzyme; Provisional
Probab=99.97 E-value=6.7e-30 Score=300.88 Aligned_cols=258 Identities=18% Similarity=0.188 Sum_probs=173.1
Q ss_pred CCCCccceeeeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHH
Q 003613 502 PGTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKD 578 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~ 578 (807)
....++|++++++|.-+..+..+++++++++ |+|||+||||+|||+||++.+ .+|||++.+||+++++||+.++||+
T Consensus 244 ~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~ 323 (730)
T PRK12568 244 PAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQ 323 (730)
T ss_pred CCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHH
Confidence 4567899999999974332223689999998 599999999999999999876 4799999999999999999999999
Q ss_pred HHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 579 LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
||++||++||+||||+|+||++.+.. .+..|++...|... ++ ..+. ..+|..+ .+|+.+|+|++
T Consensus 324 lV~~~H~~Gi~VIlD~V~nH~~~d~~----~l~~fdg~~~Ye~~-----d~---~~g~---~~~W~~~-~~N~~~peVr~ 387 (730)
T PRK12568 324 FVDACHRAGIGVILDWVSAHFPDDAH----GLAQFDGAALYEHA-----DP---REGM---HRDWNTL-IYNYGRPEVTA 387 (730)
T ss_pred HHHHHHHCCCEEEEEeccccCCcccc----ccccCCCccccccC-----CC---cCCc---cCCCCCe-ecccCCHHHHH
Confidence 99999999999999999999997642 11222222111110 00 0011 1122222 58999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccchh------------------------HHHHHHHH----HhcCCcEEEeccccCCC
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYL----EATEPYFAVGEYWDSLS 710 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~f~------------------------~~~i~~~~----~~~~~~~lvGE~w~~~~ 710 (807)
+|++++++|++++||||||+|++.++. .+|++++. +..+++++|||.+..-+
T Consensus 388 ~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p 467 (730)
T PRK12568 388 YLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP 467 (730)
T ss_pred HHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc
Confidence 999999999999999999999875331 13444443 33456999999865321
Q ss_pred cccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccccCCCC
Q 003613 711 YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGS 790 (807)
Q Consensus 711 ~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveNHDt~R 790 (807)
-+.. ....++-+++..+++.+...+.++++.....+-.......-+++..+. ....+..|||+.-
T Consensus 468 ~vt~--------------p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~~~-e~fvlp~SHDEvv 532 (730)
T PRK12568 468 GVTA--------------PISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYAFS-ERFVLPLSHDEVV 532 (730)
T ss_pred cccc--------------cccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhhhh-ccEeccCCCcccc
Confidence 1100 111113346667777777777777765433322111000011121122 2345779999853
No 26
>PRK14706 glycogen branching enzyme; Provisional
Probab=99.97 E-value=6.7e-30 Score=300.70 Aligned_cols=253 Identities=18% Similarity=0.167 Sum_probs=170.4
Q ss_pred CCccceeeeeeeeccCCCCC--CcHHHHHHhH-HHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHH
Q 003613 504 TGTGFEILCQGFNWESHKSG--RWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKD 578 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~G--Gdl~GI~ekL-dYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~ 578 (807)
...+|++++.+|.-. .+| +.|++++++| +|||+||||+|+|+||++.+ .++||++.|||+++++||+.++||+
T Consensus 144 ~~~IYE~Hvg~f~~~--~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~ 221 (639)
T PRK14706 144 PISIYEVHVGSWARR--DDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKY 221 (639)
T ss_pred CcEEEEEehhhcccC--CCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHH
Confidence 468899999999632 234 5899999997 89999999999999999875 4699999999999999999999999
Q ss_pred HHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 579 VVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 579 LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
||++||++||+||||+|+||++.+.. .+..+++...+... ++ ..+ +. ..|.. ..+|+.+++||+
T Consensus 222 lv~~~H~~gi~VilD~v~nH~~~~~~----~l~~~dg~~~y~~~-----~~---~~g-~~--~~w~~-~~~~~~~~eVr~ 285 (639)
T PRK14706 222 LVNHLHGLGIGVILDWVPGHFPTDES----GLAHFDGGPLYEYA-----DP---RKG-YH--YDWNT-YIFDYGRNEVVM 285 (639)
T ss_pred HHHHHHHCCCEEEEEecccccCcchh----hhhccCCCcceecc-----CC---cCC-cC--CCCCC-cccCCCCHHHHH
Confidence 99999999999999999999988642 11112221111000 00 001 00 11222 248999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccchh----------------------HHHHHHHHHh----cCCcEEEeccccCCCcc
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDYLEA----TEPYFAVGEYWDSLSYT 712 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~f~----------------------~~~i~~~~~~----~~~~~lvGE~w~~~~~~ 712 (807)
+|++.+++|++++||||||+|++.++. ..|++.+.+. .+++++|||.|.+-+.+
T Consensus 286 ~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v 365 (639)
T PRK14706 286 FLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGV 365 (639)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCc
Confidence 999999999999999999999987541 2445544432 35599999999752211
Q ss_pred cccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCC-CCcCcCCCcceecccccCCCCC
Q 003613 713 YGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPP-GVVGWWPSRAVTFIENHDTGST 791 (807)
Q Consensus 713 ~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~-~l~~~~P~~avtFveNHDt~R~ 791 (807)
.. .... +.+++..++..+...+...++....++-.... ... ..+..+..+ ..|++|||+.+.
T Consensus 366 ~~--------------~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~-~lt~~~~y~~~e~-~il~~SHDev~~ 428 (639)
T PRK14706 366 TV--------------PTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHH-KLTFFNVYRTSEN-YVLAISHDEVVH 428 (639)
T ss_pred cc--------------ccCC-CCccccEeccHHHHHHHHHhccCchhhhhchh-ccchhhhhhcccc-EecCCCCccccC
Confidence 10 1111 34556666666666666666544444321110 000 011111112 338899999885
No 27
>PLN02960 alpha-amylase
Probab=99.97 E-value=3.5e-29 Score=295.25 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=126.8
Q ss_pred CCCccceeeeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 003613 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (807)
....+|++++..|. ..+.=|+|++++++ |+||++||||+|||+||++.. .+|||++.|||+++++|||.++|++|
T Consensus 394 ~~~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~L 471 (897)
T PLN02960 394 KSLRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRL 471 (897)
T ss_pred CCcEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHH
Confidence 45678999998764 22112689999976 999999999999999999866 46999999999999999999999999
Q ss_pred HHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHH
Q 003613 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRK 658 (807)
Q Consensus 580 V~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdLn~~np~Vr~ 658 (807)
|++||++||+||||+|+||++.++.. + ...|++...+ +|. +...+...| +...+|+.+++|++
T Consensus 472 Vd~aH~~GI~VILDvV~NH~~~d~~~--~-L~~FDG~~~~----------Yf~~~~~g~~~~W---G~~~fNy~~~eVr~ 535 (897)
T PLN02960 472 VDEAHGLGLLVFLDIVHSYAAADEMV--G-LSLFDGSNDC----------YFHSGKRGHHKRW---GTRMFKYGDHEVLH 535 (897)
T ss_pred HHHHHHCCCEEEEEecccccCCcccc--c-hhhcCCCccc----------eeecCCCCccCCC---CCcccCCCCHHHHH
Confidence 99999999999999999999987421 1 1112221101 111 000111122 23578999999999
Q ss_pred HHHHHHHHHHHhcCccEEEEccccc
Q 003613 659 DIKEWLCWLRNEIGYDGWRLDFVRG 683 (807)
Q Consensus 659 ~i~~~l~~Wi~e~GVDGfRlDaa~~ 683 (807)
+|++.+++|+++|||||||+|++..
T Consensus 536 fLlsna~yWl~EyhIDGfR~DAV~s 560 (897)
T PLN02960 536 FLLSNLNWWVTEYRVDGFQFHSLGS 560 (897)
T ss_pred HHHHHHHHHHHHHCCCceeecccce
Confidence 9999999999999999999999964
No 28
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=99.96 E-value=1.9e-29 Score=302.80 Aligned_cols=194 Identities=20% Similarity=0.274 Sum_probs=145.4
Q ss_pred CCCCccceeeeeeeeccCCC----CCCcHHHHHHh-------HHHHHHcCCCEEEECCCCCCC-----------------
Q 003613 502 PGTGTGFEILCQGFNWESHK----SGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV----------------- 553 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~----~GGdl~GI~ek-------LdYLk~LGvt~I~L~PIfes~----------------- 553 (807)
..+.++||+++++|...... .-|.|.+++++ |.||++||||+|.|+|+|+..
T Consensus 250 ~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~ 329 (898)
T TIGR02103 250 FADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFS 329 (898)
T ss_pred CcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchh
Confidence 46778999999999853221 23677788776 667778899999999998642
Q ss_pred -----------------------------------------------CCCCCCcccCCccCCCCCCH-------HHHHHH
Q 003613 554 -----------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKDV 579 (807)
Q Consensus 554 -----------------------------------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~L 579 (807)
.||||+|..|+.++..|++. .|||+|
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~m 409 (898)
T TIGR02103 330 KLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREM 409 (898)
T ss_pred hhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHH
Confidence 16999999999999999984 699999
Q ss_pred HHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 003613 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (807)
Q Consensus 580 V~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~ 659 (807)
|++||++||+||||+|+|||+..++.....+.... ..|..+ +...+.+. ......+++.++++|+++
T Consensus 410 V~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~--P~YY~r--------~~~~G~~~---n~~~~~d~a~e~~~Vrk~ 476 (898)
T TIGR02103 410 VQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIV--PGYYHR--------LNEDGGVE---NSTCCSNTATEHRMMAKL 476 (898)
T ss_pred HHHHHHCCCEEEEEeecccccccCccCcccccccC--cHhhEe--------eCCCCCee---cCCCCcCCCCCCHHHHHH
Confidence 99999999999999999999986532211111100 000000 00001111 122335789999999999
Q ss_pred HHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHhc----CCcEEEeccccC
Q 003613 660 IKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT----EPYFAVGEYWDS 708 (807)
Q Consensus 660 i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~----~~~~lvGE~w~~ 708 (807)
|++++++|+++|||||||||+++|+..++++++.++. +++|++||.|+.
T Consensus 477 iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 477 IVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999998888887776543 459999999984
No 29
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=99.96 E-value=4.3e-28 Score=286.17 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=166.9
Q ss_pred CCccceeeeeeeeccCCCCCCcHHHHH-HhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHH
Q 003613 504 TGTGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~GGdl~GI~-ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (807)
...+|++++..|. ..+.-|.+++++ ++|+|||+||||+|||+||++.. .+|||++.|||+++++|||.++||+||
T Consensus 229 ~~~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LV 306 (758)
T PLN02447 229 ALRIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLI 306 (758)
T ss_pred CCEEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHH
Confidence 3568999998653 221126788875 56999999999999999999986 479999999999999999999999999
Q ss_pred HHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHH
Q 003613 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR-GNKSSGDNFHAAPNIDHSQDFVRKD 659 (807)
Q Consensus 581 ~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~-~~~~~~~~~~~lpdLn~~np~Vr~~ 659 (807)
++||++||+||||+|+||++.++.. + ...|.+.. ..+|... ..+.. .| +...+|+.+++|+++
T Consensus 307 d~aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg~~----------~~Yf~~~~~g~~~--~w-~~~~~N~~~~eVr~f 370 (758)
T PLN02447 307 DKAHSLGLRVLMDVVHSHASKNTLD--G-LNGFDGTD----------GSYFHSGPRGYHW--LW-DSRLFNYGNWEVLRF 370 (758)
T ss_pred HHHHHCCCEEEEEeccccccccccc--c-ccccCCCC----------ccccccCCCCCcC--cC-CCceecCCCHHHHHH
Confidence 9999999999999999999976421 1 11111100 0111110 01111 11 234699999999999
Q ss_pred HHHHHHHHHHhcCccEEEEccccchhH--------------------------HHHHHHH----HhcCCcEEEeccccCC
Q 003613 660 IKEWLCWLRNEIGYDGWRLDFVRGFWG--------------------------GYVKDYL----EATEPYFAVGEYWDSL 709 (807)
Q Consensus 660 i~~~l~~Wi~e~GVDGfRlDaa~~f~~--------------------------~~i~~~~----~~~~~~~lvGE~w~~~ 709 (807)
|++++++|+++|||||||+|+++++.- .|++.+. +..+++++|||.+.+.
T Consensus 371 Ll~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~ 450 (758)
T PLN02447 371 LLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGM 450 (758)
T ss_pred HHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 999999999999999999999985521 1233222 2235699999988753
Q ss_pred CcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcC--chhhhhhccCCCCCCcC-cCCCcceeccccc
Q 003613 710 SYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPPGVVG-WWPSRAVTFIENH 786 (807)
Q Consensus 710 ~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g--~~~~l~~~~g~~~~l~~-~~P~~avtFveNH 786 (807)
+.+..... .++-+++.-.+........++++.. ..|.+.... -+++. .+..+.|.|.++|
T Consensus 451 p~l~~p~~--------------~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~---~sl~~r~~~E~~I~y~eSH 513 (758)
T PLN02447 451 PTLCRPVQ--------------EGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIV---HTLTNRRYTEKCVAYAESH 513 (758)
T ss_pred CCccccCC--------------CCcCCcceEECCccchHHHHHHhhCCCcccCHHHHH---HHHhcccccCceEeccCCc
Confidence 32211000 0112223333333344444455432 334433322 12233 3567788999999
Q ss_pred CCCCC
Q 003613 787 DTGST 791 (807)
Q Consensus 787 Dt~R~ 791 (807)
|+..-
T Consensus 514 Devv~ 518 (758)
T PLN02447 514 DQALV 518 (758)
T ss_pred Ceeec
Confidence 98764
No 30
>PRK14705 glycogen branching enzyme; Provisional
Probab=99.96 E-value=2.9e-28 Score=299.24 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=142.0
Q ss_pred CCCccceeeeeeeeccCCCCCCcHHHHHHh-HHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHH
Q 003613 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~L 579 (807)
...++|++++++|.- ++.|++++++ |||||+||||+|||+||++.+ .+|||++.|||+++++|||.+|||+|
T Consensus 746 ~p~~IYEvHvgsf~~-----~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~l 820 (1224)
T PRK14705 746 SPMSVYEVHLGSWRL-----GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFL 820 (1224)
T ss_pred CCcEEEEEEeccccc-----CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHH
Confidence 446889999999852 5679999988 599999999999999999876 47999999999999999999999999
Q ss_pred HHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 003613 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (807)
Q Consensus 580 V~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~ 659 (807)
|++||++||+||||+|+||++.+... ...|++...|... ++. .+. ..+|.. ..+|+.+++|+++
T Consensus 821 Vd~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~-----d~~---~g~---~~~Wg~-~~fn~~~~eVr~f 884 (1224)
T PRK14705 821 VDSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHA-----DPA---LGE---HPDWGT-LIFDFGRTEVRNF 884 (1224)
T ss_pred HHHHHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccC-----Ccc---cCC---CCCCCC-ceecCCCHHHHHH
Confidence 99999999999999999999866310 0112221111110 000 011 112222 4689999999999
Q ss_pred HHHHHHHHHHhcCccEEEEccccch------------------------hHHHHHHHHH----hcCCcEEEeccccC
Q 003613 660 IKEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLE----ATEPYFAVGEYWDS 708 (807)
Q Consensus 660 i~~~l~~Wi~e~GVDGfRlDaa~~f------------------------~~~~i~~~~~----~~~~~~lvGE~w~~ 708 (807)
|++++++|+++|||||||+|++.+| ...|++++.+ ..+++++|||.+..
T Consensus 885 li~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~ 961 (1224)
T PRK14705 885 LVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTA 961 (1224)
T ss_pred HHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 9999999999999999999998654 1345555443 33569999998874
No 31
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.95 E-value=2.3e-27 Score=271.30 Aligned_cols=240 Identities=16% Similarity=0.091 Sum_probs=175.3
Q ss_pred HHhHHHHHHcCCCEEEECCCCCC---------CC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTES---------VS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes---------~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
....+||++|||++|||+|++++ +. .+|||+.| +.|||.|||++||++||++||++|||||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45579999999999999999999 55 68999999 599999999999999999999999999999999999
Q ss_pred ccccCc--CCCcccccCCcC-----------CCCCCccc---------------------CC--CCCC----------C-
Q 003613 600 CAHYQN--QNGVWNIFGGRL-----------NWDDRAVV---------------------AD--DPHF----------Q- 632 (807)
Q Consensus 600 g~d~~~--~~~~w~~~~g~~-----------~w~~~~~~---------------------~~--~~~f----------~- 632 (807)
|..|+. ......+|++.+ -|.+.... .. ..-| .
T Consensus 156 s~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~ 235 (688)
T TIGR02455 156 GKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSA 235 (688)
T ss_pred CCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCcee
Confidence 998741 111122333333 33332211 00 0012 1
Q ss_pred ----------CCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcCccEEEEcccc-----------------
Q 003613 633 ----------GRGNKSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVR----------------- 682 (807)
Q Consensus 633 ----------~~~~~~~~~~~~~lpdLn~~np~--Vr~~i~-~~l~~Wi~e~GVDGfRlDaa~----------------- 682 (807)
.+..+|...++...|+||+.||. |++.|+ +++++|+ ++|++|||+|++.
T Consensus 236 d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~h 314 (688)
T TIGR02455 236 TGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEGH 314 (688)
T ss_pred cccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCccC
Confidence 11234445578899999999999 999999 8999999 9999999999963
Q ss_pred chhHHHHHHHHH--h-cCCcEEEeccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchh
Q 003613 683 GFWGGYVKDYLE--A-TEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYW 759 (807)
Q Consensus 683 ~f~~~~i~~~~~--~-~~~~~lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~ 759 (807)
.+... .++++. . ....++++|.-.. .+.+..|+. ++++..|||.++.++.-++..++..
T Consensus 315 ~ll~~-~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g--~~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 315 PLSLT-GNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSH--GGADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred HHHHH-HHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhC--CCcceeecccccHHHHHHHHcCCHH
Confidence 12222 233333 1 2348888887542 356778887 3889999999999999999988876
Q ss_pred hhhhccCCCCCCcCcCCCcceecccccCCCC
Q 003613 760 RLSDEKGKPPGVVGWWPSRAVTFIENHDTGS 790 (807)
Q Consensus 760 ~l~~~~g~~~~l~~~~P~~avtFveNHDt~R 790 (807)
-+...+...+.+ .-.+.+.++|+.|||.--
T Consensus 377 pLr~~L~~~~~~-gid~~~~~~~LrNHDELt 406 (688)
T TIGR02455 377 FLRLMLKEMHAF-GIDPASLIHALQNHDELT 406 (688)
T ss_pred HHHHHHHhhhcC-CCCchhhhhhccCccccc
Confidence 665554322211 125567899999999843
No 32
>PLN02877 alpha-amylase/limit dextrinase
Probab=99.95 E-value=4e-27 Score=282.31 Aligned_cols=193 Identities=19% Similarity=0.232 Sum_probs=140.7
Q ss_pred CCCCccceeeeeeeeccCCC----CCCcHHHHHHh-------HHHHHHcCCCEEEECCCCCCC-----------------
Q 003613 502 PGTGTGFEILCQGFNWESHK----SGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV----------------- 553 (807)
Q Consensus 502 ~~~~~~~~v~~~~F~Wd~~~----~GGdl~GI~ek-------LdYLk~LGvt~I~L~PIfes~----------------- 553 (807)
..+.++||+++++|...... .-|.|.+++++ |+||++||||+|+|+|+|+..
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l 416 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKEL 416 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchh
Confidence 46789999999999864221 12677788776 677777799999999998741
Q ss_pred ----------------------CCCCCCcccCCccCCCCCCH-------HHHHHHHHHHHHcCcEEEEeEeecccccccC
Q 003613 554 ----------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 604 (807)
Q Consensus 554 ----------------------s~hGYd~~Dy~~IDp~lGt~-------edfk~LV~aaH~~GIkVILD~V~NHtg~d~~ 604 (807)
.||||+|..|+.++..|++. .|||+||++||++||+||||+|+||++...+
T Consensus 417 ~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 417 EKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCC
Confidence 46999999999999999983 5899999999999999999999999986532
Q ss_pred cC-CCcccccCCcC-CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccc
Q 003613 605 NQ-NGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (807)
Q Consensus 605 ~~-~~~w~~~~g~~-~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~ 682 (807)
.. +.. +.... .|..+. ...+.+. ......+.+.++++||++|++.+++|+++|||||||||++.
T Consensus 497 ~~~~s~---ld~~vP~YY~r~--------~~~G~~~---ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 497 FDENSV---LDKIVPGYYLRR--------NSDGFIE---NSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred cchhhc---ccCCCCCceEEE--------CCCCCcc---cCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 11 111 11100 000000 0011111 11223466789999999999999999999999999999999
Q ss_pred chhHHHHHHHHH---hc---------CCcEEEeccccC
Q 003613 683 GFWGGYVKDYLE---AT---------EPYFAVGEYWDS 708 (807)
Q Consensus 683 ~f~~~~i~~~~~---~~---------~~~~lvGE~w~~ 708 (807)
++..+.+.++++ +. +..+++||.|+.
T Consensus 563 ~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~ 600 (970)
T PLN02877 563 HLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDF 600 (970)
T ss_pred cccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCC
Confidence 888876555443 22 338999999974
No 33
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3e-27 Score=276.97 Aligned_cols=176 Identities=24% Similarity=0.316 Sum_probs=130.8
Q ss_pred CCCCCCCCCccceeeeeeeeccCCC----CCCcHHHHHHh--HHHHHHcCCCEEEECCCCCCC-----------CCCCCC
Q 003613 497 PAKISPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYM 559 (807)
Q Consensus 497 ~~~~~~~~~~~~~v~~~~F~Wd~~~----~GGdl~GI~ek--LdYLk~LGvt~I~L~PIfes~-----------s~hGYd 559 (807)
+.++..++..+||+++++|.--.++ -.|.|.|++++ |+|||+||||+|.|+||+... .||||+
T Consensus 164 ~~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYd 243 (697)
T COG1523 164 PPRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYD 243 (697)
T ss_pred CCCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCC
Confidence 3345568889999999999842222 14889999999 999999999999999998632 379999
Q ss_pred cccCCccCCCCCCH-------HHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCc----CCCCCCcccCCC
Q 003613 560 PRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR----LNWDDRAVVADD 628 (807)
Q Consensus 560 ~~Dy~~IDp~lGt~-------edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~----~~w~~~~~~~~~ 628 (807)
|..||+++++|-+. .|||.||+++|++||.||||+|||||+..... +.=..|.+. +.+-+.. ...
T Consensus 244 P~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~--g~t~~f~~id~~~Yyr~~~d--g~~ 319 (697)
T COG1523 244 PLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL--GPTLSFRGIDPNYYYRLDPD--GYY 319 (697)
T ss_pred cccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc--CcccccccCCcCceEEECCC--CCe
Confidence 99999999999653 49999999999999999999999999754210 100111111 0010000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhHH
Q 003613 629 PHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGG 687 (807)
Q Consensus 629 ~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~ 687 (807)
.++.++ ...||.++|.||++|++.|+||+++++|||||+|.|..+-++
T Consensus 320 ~N~TGc-----------GNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~ 367 (697)
T COG1523 320 SNGTGC-----------GNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRE 367 (697)
T ss_pred ecCCcc-----------CcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccc
Confidence 112222 236999999999999999999999999999999999755443
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.8e-25 Score=253.15 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=127.0
Q ss_pred CCCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHHHHHH
Q 003613 503 GTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKDVV 580 (807)
Q Consensus 503 ~~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (807)
...++||+++.+|.++ ..=|+++..+++||||++||||+|.|+||.+.+. ++||+++-||++.++|||.++||+||
T Consensus 143 e~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fV 220 (628)
T COG0296 143 EPIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALV 220 (628)
T ss_pred CCceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHH
Confidence 4678999999999873 2237899999999999999999999999988774 79999999999999999999999999
Q ss_pred HHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 003613 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (807)
Q Consensus 581 ~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i 660 (807)
++||++||.||||+|+||.+.+.. .-..|++..-.... ++. .+. ...|... -.|...++||++|
T Consensus 221 D~aH~~GIgViLD~V~~HF~~d~~----~L~~fdg~~~~e~~-----~~~-~~~-----~~~Wg~~-i~~~gr~EVR~Fl 284 (628)
T COG0296 221 DAAHQAGIGVILDWVPNHFPPDGN----YLARFDGTFLYEHE-----DPR-RGE-----HTDWGTA-IFNYGRNEVRNFL 284 (628)
T ss_pred HHHHHcCCEEEEEecCCcCCCCcc----hhhhcCCccccccC-----Ccc-ccc-----CCCcccc-hhccCcHHHHHHH
Confidence 999999999999999999998642 01112222111100 000 000 0112221 2344589999999
Q ss_pred HHHHHHHHHhcCccEEEEccccch
Q 003613 661 KEWLCWLRNEIGYDGWRLDFVRGF 684 (807)
Q Consensus 661 ~~~l~~Wi~e~GVDGfRlDaa~~f 684 (807)
++.+.+|+++|+|||+|+||+..|
T Consensus 285 l~nal~Wl~~yHiDGlRvDAV~sm 308 (628)
T COG0296 285 LANALYWLEEYHIDGLRVDAVASM 308 (628)
T ss_pred HHHHHHHHHHhCCcceeeehhhhh
Confidence 999999999999999999999643
No 35
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.93 E-value=8e-25 Score=259.66 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=142.3
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
|++|++++++|+||++|||++|||+||+++. ++|||++.||+.|||.|||.++|++||++||++||+||+|+|+||+|
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7889999999999999999999999999874 67999999999999999999999999999999999999999999999
Q ss_pred cccC-c-------CCCcccccCCcC--CCCCC------------------------------------------cccCC-
Q 003613 601 AHYQ-N-------QNGVWNIFGGRL--NWDDR------------------------------------------AVVAD- 627 (807)
Q Consensus 601 ~d~~-~-------~~~~w~~~~g~~--~w~~~------------------------------------------~~~~~- 627 (807)
.+.. + ++|.-+++..++ +|... .+...
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 8621 0 011101111111 23210 00000
Q ss_pred -------------CC---------------CCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003613 628 -------------DP---------------HFQ---GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (807)
Q Consensus 628 -------------~~---------------~f~---~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGf 676 (807)
++ +|. ..-||..+.+...|+.++.++|+|.+....++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00 000 01123334456789999999999999999999999955559999
Q ss_pred EEccccch--hHHHHHHHHHhcCC-cEEEec-cccC
Q 003613 677 RLDFVRGF--WGGYVKDYLEATEP-YFAVGE-YWDS 708 (807)
Q Consensus 677 RlDaa~~f--~~~~i~~~~~~~~~-~~lvGE-~w~~ 708 (807)
|+|.++++ +..+++++.++..+ .+++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 88899999887775 889999 7764
No 36
>smart00642 Aamy Alpha-amylase domain.
Probab=99.91 E-value=2.7e-24 Score=214.40 Aligned_cols=93 Identities=32% Similarity=0.523 Sum_probs=88.7
Q ss_pred eeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCC----CCCCCCcccCCccCCCCCCHHHHHHHHHHHH
Q 003613 509 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFH 584 (807)
Q Consensus 509 ~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH 584 (807)
+|++++|.|.....+|+|++|+++|+||++|||++|||+||+++. ++|||++.||+++||+|||.++|++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 478899999877778999999999999999999999999999988 6899999999999999999999999999999
Q ss_pred HcCcEEEEeEeeccccc
Q 003613 585 DVGMKILGDVVLNHRCA 601 (807)
Q Consensus 585 ~~GIkVILD~V~NHtg~ 601 (807)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999975
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=241.12 Aligned_cols=167 Identities=28% Similarity=0.438 Sum_probs=130.9
Q ss_pred CCccceeeeeeeeccCCC---CCCcHHHHHHh-HHHHHHcCCCEEEECCCCCCC---CCCCCCcccCCccCCCCCCHH--
Q 003613 504 TGTGFEILCQGFNWESHK---SGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNID-- 574 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~---~GGdl~GI~ek-LdYLk~LGvt~I~L~PIfes~---s~hGYd~~Dy~~IDp~lGt~e-- 574 (807)
+-.+|+.++++|.-+.++ -|| |++.++| |++||.||+|+|+|+||++.. ..+||.|++|++...+|||.+
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 667899999999855443 256 9999999 999999999999999999995 259999999999999999999
Q ss_pred ----HHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCC-CCCCCCCCCCCCCCCC
Q 003613 575 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG-RGNKSSGDNFHAAPNI 649 (807)
Q Consensus 575 ----dfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~-~~~~~~~~~~~~lpdL 649 (807)
|||.||++||..||-|+||+|.||++.+..+ ..+-|+|.. +..+|+. ...+ ........+
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d---~l~~fdGid---------~~~Yf~~~~r~~---h~~~~~r~f 372 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKD---GLNMFDGID---------NSVYFHSGPRGY---HNSWCSRLF 372 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCC---cchhccCcC---------CceEEEeCCccc---ccccccccc
Confidence 9999999999999999999999999984321 122233211 0111211 0000 011123458
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhH
Q 003613 650 DHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (807)
Q Consensus 650 n~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~ 686 (807)
|+++++|+++|++.++||+++|+|||||+|.+.+|..
T Consensus 373 n~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~ 409 (757)
T KOG0470|consen 373 NYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLY 409 (757)
T ss_pred cCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhh
Confidence 9999999999999999999999999999999975544
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=9.2e-23 Score=215.59 Aligned_cols=264 Identities=27% Similarity=0.441 Sum_probs=183.5
Q ss_pred CCccceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCC--------CCCCcccCCccCCCCCCHHH
Q 003613 504 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSP--------EGYMPRDLYNLSSRYGNIDE 575 (807)
Q Consensus 504 ~~~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~--------hGYd~~Dy~~IDp~lGt~ed 575 (807)
++.+...|++.|+| .|-+...|+-..|.--|+.+|+++|+.|+... .+|+|.. |++++|-|++++
T Consensus 24 ~~~~R~tmVHLFEW------KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~e 96 (504)
T KOG2212|consen 24 TQQGRTTIVHLFEW------KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDE 96 (504)
T ss_pred hhcCcceEEEEEEe------ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHH
Confidence 34445669999999 56666677778999999999999999987532 4799996 789999999999
Q ss_pred HHHHHHHHHHcCcEEEEeEeecccccccCcC-----CCccc-----ccCC--cCCCCCCcccC-----CCCCCCCCCCCC
Q 003613 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ-----NGVWN-----IFGG--RLNWDDRAVVA-----DDPHFQGRGNKS 638 (807)
Q Consensus 576 fk~LV~aaH~~GIkVILD~V~NHtg~d~~~~-----~~~w~-----~~~g--~~~w~~~~~~~-----~~~~f~~~~~~~ 638 (807)
|+.||++|.+.|+|+++|+|+|||+....+. .|... .|.| +..|+-....+ ...+|..... -
T Consensus 97 F~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~-V 175 (504)
T KOG2212|consen 97 FRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQ-V 175 (504)
T ss_pred HHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhh-h
Confidence 9999999999999999999999998632110 01110 1111 00111000000 0000100000 0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccchhHHHHHHHHHhc-----------CCcEEEecccc
Q 003613 639 SGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT-----------EPYFAVGEYWD 707 (807)
Q Consensus 639 ~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f~~~~i~~~~~~~-----------~~~~lvGE~w~ 707 (807)
.-.-.-+|-|||..+..||..|++.|.+++ ++||.|||.|++||||++-+..+.... ...|++-|+.+
T Consensus 176 ~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEVID 254 (504)
T KOG2212|consen 176 RDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEVID 254 (504)
T ss_pred hcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhhhh
Confidence 001234788999999999999999999999 999999999999999999888776542 23788999987
Q ss_pred CCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCchhhhhhccCCCCCCcCcCCCcceecccccC
Q 003613 708 SLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHD 787 (807)
Q Consensus 708 ~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~~~l~~~~g~~~~l~~~~P~~avtFveNHD 787 (807)
-. |+.-- -.+|.. +..+..|.+-..+-.++++.+.+......|...+.+ ...++++||+|||
T Consensus 255 ~G----gE~v~--------~~dY~g----~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~~~L~FvDNHD 316 (504)
T KOG2212|consen 255 LG----GEPIK--------SSDYFG----NGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSDRALVFVDNHD 316 (504)
T ss_pred cC----Cceee--------cccccC----CceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC--CCcceEEEeccCc
Confidence 32 12111 113433 244667777888999998888777666555544443 2347899999999
Q ss_pred CCCCCCC
Q 003613 788 TGSTQVR 794 (807)
Q Consensus 788 t~R~~~~ 794 (807)
++|..|.
T Consensus 317 NQR~~ga 323 (504)
T KOG2212|consen 317 NQRGHGA 323 (504)
T ss_pred ccccCCC
Confidence 9998765
No 39
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.84 E-value=3.8e-20 Score=220.88 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=77.9
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
|.+|++++++|+||++|||++|||+||+++. ++|||++.||+.|||.||+.++|++||++||++||+||+|+|+||||
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999875 78999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 003613 601 AHY 603 (807)
Q Consensus 601 ~d~ 603 (807)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 875
No 40
>PLN03244 alpha-amylase; Provisional
Probab=99.76 E-value=9.3e-18 Score=195.90 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=80.1
Q ss_pred cccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCC-CCCCC
Q 003613 560 PRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG-RGNKS 638 (807)
Q Consensus 560 ~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~-~~~~~ 638 (807)
+++||+++++|||.+|||+||++||++||+||||+|+||++.+... +. ..+++... .+|.. .....
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--GL-~~fDGt~~----------~Yf~~~~~g~~ 493 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSND----------CYFHTGKRGHH 493 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcccc--ch-hhcCCCcc----------ceeccCCCCcc
Confidence 6799999999999999999999999999999999999999986421 10 11221110 11111 00111
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcccc
Q 003613 639 SGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (807)
Q Consensus 639 ~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~ 682 (807)
..| +...+|+.+++|+++|++.+++|+++++|||||+|++.
T Consensus 494 ~~W---Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 494 KHW---GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CCC---CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 122 22468999999999999999999999999999999983
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.75 E-value=9.3e-18 Score=211.07 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=76.4
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
++.|++++++|+||++|||++|||+|||++. ++|||++.||+.|||.||+.++|++||++||++||+||+|+|+||+|
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 6789999999999999999999999999963 78999999999999999999999999999999999999999999999
Q ss_pred cc
Q 003613 601 AH 602 (807)
Q Consensus 601 ~d 602 (807)
.+
T Consensus 834 ~~ 835 (1693)
T PRK14507 834 VG 835 (1693)
T ss_pred CC
Confidence 53
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.1e-15 Score=175.56 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=76.2
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCC--CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
|=+|...++.||||++|||.++|++|||.+. |.||||++|+..|+|.+|+.+.|.+||.++|++||.+|+|+|+|||+
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMa 94 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMA 94 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchh
Confidence 3468999999999999999999999999875 68999999999999999999999999999999999999999999999
Q ss_pred cc
Q 003613 601 AH 602 (807)
Q Consensus 601 ~d 602 (807)
..
T Consensus 95 v~ 96 (889)
T COG3280 95 VG 96 (889)
T ss_pred cc
Confidence 87
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.44 E-value=1.7e-13 Score=168.57 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=75.5
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCC-CCCCCCCCCcccCCccCCCCC----CHHHHHHHHHHHHHc-CcEEEEeEeec
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPT-ESVSPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVLN 597 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIf-es~s~hGYd~~Dy~~IDp~lG----t~edfk~LV~aaH~~-GIkVILD~V~N 597 (807)
|.|....++|+||++||+|.|||+||+ .+.++|.|++.||+.|||.|| +.++|++||++||++ ||++|+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 668899999999999999999999999 566899999999999999994 899999999999997 99999999999
Q ss_pred cccccc
Q 003613 598 HRCAHY 603 (807)
Q Consensus 598 Htg~d~ 603 (807)
|||.+|
T Consensus 209 HTa~ds 214 (1464)
T TIGR01531 209 HTANNS 214 (1464)
T ss_pred ccccCC
Confidence 999985
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.52 E-value=2.2e-07 Score=104.69 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=72.8
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCC------HHHHHHHHHHHH-HcCcEEEEeEe
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGN------IDELKDVVNKFH-DVGMKILGDVV 595 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt------~edfk~LV~aaH-~~GIkVILD~V 595 (807)
|.+..-.++|..++++|+|.|+++|+.+-+ |++.|.+.|...+||.+.. .++++++|.+++ +.||..|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 667788899999999999999999999865 5899999999999998765 369999999995 79999999999
Q ss_pred ecccccccC
Q 003613 596 LNHRCAHYQ 604 (807)
Q Consensus 596 ~NHtg~d~~ 604 (807)
+|||+.+++
T Consensus 99 ~NHtA~nS~ 107 (423)
T PF14701_consen 99 LNHTANNSP 107 (423)
T ss_pred eccCcCCCh
Confidence 999999874
No 45
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.14 E-value=1e-05 Score=93.36 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=96.2
Q ss_pred ccceeeeeeeeccCCCCCCcHHHHHHhHHHHHH---------------cCCCEEEECCCCCCC-----------------
Q 003613 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSS---------------LGFSVIWLPPPTESV----------------- 553 (807)
Q Consensus 506 ~~~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~---------------LGvt~I~L~PIfes~----------------- 553 (807)
.+-++++..- ..+|.|.|+.+.-..|.+ .|+++|+|+||=+..
T Consensus 180 nILQiHv~TA-----sp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~ 254 (811)
T PF14872_consen 180 NILQIHVGTA-----SPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRP 254 (811)
T ss_pred eeEEEecCCC-----CCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecc
Confidence 4455555432 236888888777666642 599999999984321
Q ss_pred ----------------------------CCCCCCcc--cCCccCCC-CC--CHHHHHHHHHHHHH---cCcEEEEeEeec
Q 003613 554 ----------------------------SPEGYMPR--DLYNLSSR-YG--NIDELKDVVNKFHD---VGMKILGDVVLN 597 (807)
Q Consensus 554 ----------------------------s~hGYd~~--Dy~~IDp~-lG--t~edfk~LV~aaH~---~GIkVILD~V~N 597 (807)
.|+|||+. -.-+.+|. ++ -++|+-+||+.+|. ..|+||+|+|+.
T Consensus 255 ~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyG 334 (811)
T PF14872_consen 255 EDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYG 334 (811)
T ss_pred cccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecc
Confidence 13556543 11222332 22 35899999999996 679999999999
Q ss_pred ccccccCc-CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003613 598 HRCAHYQN-QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (807)
Q Consensus 598 Htg~d~~~-~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGf 676 (807)
|.-..... -++. .+.+.+-| .-|+|+.+|.||..+.+.-+.=+ ++|+||.
T Consensus 335 HADNQ~~~LLn~~--------------------flkGPnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGI 385 (811)
T PF14872_consen 335 HADNQALDLLNRR--------------------FLKGPNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGI 385 (811)
T ss_pred cccchhhHhhhhh--------------------hccCCccc--------cccccccChHHHHHHHHHHHhhc-ccCCcee
Confidence 98544210 0111 11111111 13799999999999999888877 9999999
Q ss_pred EEccccc
Q 003613 677 RLDFVRG 683 (807)
Q Consensus 677 RlDaa~~ 683 (807)
|+|-+..
T Consensus 386 RVDGgQD 392 (811)
T PF14872_consen 386 RVDGGQD 392 (811)
T ss_pred Eeccccc
Confidence 9999963
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.09 E-value=3e-05 Score=75.00 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=81.8
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCC--CCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCC
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPE--GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~h--GYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~ 607 (807)
.+-+++|+++|+++|-+.- .+-| -|-|+......|.++ .+-|+++|++||++||+|++=+-++ .-......+
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~H 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERH 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhC
Confidence 3567899999999999852 2222 355666677788898 7899999999999999999877666 322222344
Q ss_pred CcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003613 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (807)
Q Consensus 608 ~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDa 680 (807)
++|.-........ ....+. ... ...+..+.+ ++++++..++..++.|.+||+=+|+
T Consensus 77 PeW~~~~~~G~~~------~~~~~~-------~~~---~~~~c~ns~-Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 PEWFVRDADGRPM------RGERFG-------YPG---WYTCCLNSP-YREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred CceeeECCCCCCc------CCCCcC-------CCC---ceecCCCcc-HHHHHHHHHHHHHHcCCCCEEEecC
Confidence 5554321100000 000000 001 112333344 4589999999999889999999985
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.07 E-value=2.6e-05 Score=85.78 Aligned_cols=139 Identities=16% Similarity=0.225 Sum_probs=84.4
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCC--CHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp~lG--t~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
.-+.+.+.|+.|+++|+|+|++----.+.. ...+.|...+......+ +-+-|+.||++||++||+|..=+.++..+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 457899999999999999999854322211 12222222121122222 35789999999999999999876554443
Q ss_pred cccC---cCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003613 601 AHYQ---NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (807)
Q Consensus 601 ~d~~---~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfR 677 (807)
.... ..++.|.... ...|.. .+ . .......-||-.+|+||++|++.++..++.|.|||.-
T Consensus 97 ~~~~~~~~~~p~~~~~~-~~~~~~--------~~------~--~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIh 159 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVN-HPGWVR--------TY------E--DANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIH 159 (311)
T ss_pred CchhhhhhcCchhheec-CCCcee--------ec------c--cCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 3210 1111221000 000100 00 0 0011223588999999999999999999999999999
Q ss_pred Ecc
Q 003613 678 LDF 680 (807)
Q Consensus 678 lDa 680 (807)
||-
T Consensus 160 lDd 162 (311)
T PF02638_consen 160 LDD 162 (311)
T ss_pred ecc
Confidence 993
No 48
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.06 E-value=5.5e-06 Score=96.30 Aligned_cols=76 Identities=22% Similarity=0.506 Sum_probs=57.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCC---------CCCCCcccCCccC----CCCCCHHHHHHHHHHHHHcCcEEE
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---------PEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKIL 591 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s---------~hGYd~~Dy~~ID----p~lGt~edfk~LV~aaH~~GIkVI 591 (807)
...-|.+..+-+|++|||..||.|-+.+.. ..||+-+|-|++. ..||+.++|+..|+++|+.||+||
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 356899999999999999999999998764 3799999999996 789999999999999999999999
Q ss_pred EeEeecccc
Q 003613 592 GDVVLNHRC 600 (807)
Q Consensus 592 LD~V~NHtg 600 (807)
.|+|++.+-
T Consensus 665 aDwVpdQiY 673 (809)
T PF02324_consen 665 ADWVPDQIY 673 (809)
T ss_dssp EEE-TSEE-
T ss_pred hhhchHhhh
Confidence 999999884
No 49
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.00046 Score=78.09 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=83.1
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCC--CCCCCcccCCc--cCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYN--LSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~--IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
.=..+.+.|+.|+.||||+||..-.-.+.+ ...+.+..-.. +-..-++-+-|..+|++||++||+|+.=+-+--++
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a 141 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMA 141 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccC
Confidence 456899999999999999999653322221 11112211000 00112344678999999999999999754444444
Q ss_pred cccCc---CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003613 601 AHYQN---QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (807)
Q Consensus 601 ~d~~~---~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfR 677 (807)
..... .+..|..-. ...|. ++...++....-||-..|+|+++|.+.+...++.|.|||.-
T Consensus 142 ~~~s~~~~~~p~~~~~~-~~~~~----------------~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQ 204 (418)
T COG1649 142 PPTSPLTKRHPHWLTTK-RPGWV----------------YVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQ 204 (418)
T ss_pred CCCChhHhhCCCCcccC-CCCeE----------------EEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCcee
Confidence 32210 011110000 00000 01111111344578899999999999999999999999999
Q ss_pred Eccc
Q 003613 678 LDFV 681 (807)
Q Consensus 678 lDaa 681 (807)
||--
T Consensus 205 fDd~ 208 (418)
T COG1649 205 FDDY 208 (418)
T ss_pred ccee
Confidence 9975
No 50
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.03 E-value=0.0023 Score=75.13 Aligned_cols=129 Identities=22% Similarity=0.337 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCccEEEEccccchhHHHHHH---HHHh----------cCCc
Q 003613 642 NFHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKD---YLEA----------TEPY 699 (807)
Q Consensus 642 ~~~~lpdLn~~np~Vr~~i~~~l~~Wi~---------e~GVDGfRlDaa~~f~~~~i~~---~~~~----------~~~~ 699 (807)
.|.-..|+|.+||.|+.+.+.|+.|++. +..+||+|+||++.+-.++++. +.++ +...
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 4455568999999999999999999995 6789999999999776665542 2222 1457
Q ss_pred EEEeccccCCCcccccccccchhhHHHHHHHHhhcCCCceecchhhHHHHHHHhhcCch--hhhhhccCCCCCCc-----
Q 003613 700 FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEY--WRLSDEKGKPPGVV----- 772 (807)
Q Consensus 700 ~lvGE~w~~~~~~~G~~~y~~~~~~~~i~~yl~~~~~~~svfDf~l~~~l~~al~~g~~--~~l~~~~g~~~~l~----- 772 (807)
+-|-|.|... + ..|+...+...-.||+.++..|..+|..... ..+..... .++.
T Consensus 219 lSilE~ws~n-----d------------~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~--~slvnR~~d 279 (809)
T PF02324_consen 219 LSILEAWSSN-----D------------PDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLIT--NSLVNRSND 279 (809)
T ss_dssp --EESSSTTT-----H------------HHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHH--SSSSECSEE
T ss_pred heeeeccccC-----C------------hHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhh--hhhcccccC
Confidence 8899999852 1 1466656666779999999999999876421 11211110 1111
Q ss_pred --CcCCCcceecccccCCC
Q 003613 773 --GWWPSRAVTFIENHDTG 789 (807)
Q Consensus 773 --~~~P~~avtFveNHDt~ 789 (807)
+..+.-...||.+||.+
T Consensus 280 ~~en~a~pNYsFvrAHDse 298 (809)
T PF02324_consen 280 STENEAQPNYSFVRAHDSE 298 (809)
T ss_dssp --SSESS-EEEES-BSSTT
T ss_pred CcCCcccCceeeeecccHH
Confidence 11222347899999987
No 51
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.58 E-value=0.029 Score=61.68 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred CcHHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
-+-+.|.+.++.++++| ++.|+|--=+... . .| +..|+ +|- +.++|++++|++|||+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 35678899999999988 5688876322111 1 12 34453 565 4789999999999999997766 444
Q ss_pred cccCc-----CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccE
Q 003613 601 AHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (807)
Q Consensus 601 ~d~~~-----~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDG 675 (807)
.++.. .++.+-... + ...+ +. +. ++. ....-+|..||++++.+.+.++.++.++||||
T Consensus 96 ~~s~~~~e~~~~g~~vk~~------~----g~~~-~~--~~---~w~-g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg 158 (303)
T cd06592 96 TDSENFREAVEKGYLVSEP------S----GDIP-AL--TR---WWN-GTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDS 158 (303)
T ss_pred CCCHHHHhhhhCCeEEECC------C----CCCC-cc--cc---eec-CCcceEeCCCHHHHHHHHHHHHHHHHHhCCcE
Confidence 43310 111110000 0 0000 00 00 000 11235788999999999999999998999999
Q ss_pred EEEcccc
Q 003613 676 WRLDFVR 682 (807)
Q Consensus 676 fRlDaa~ 682 (807)
|-+|+..
T Consensus 159 ~w~D~~E 165 (303)
T cd06592 159 FKFDAGE 165 (303)
T ss_pred EEeCCCC
Confidence 9999986
No 52
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.0026 Score=76.21 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=70.5
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCC------CHHHHHHHHHHHHH-cCcEEEEeEe
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHD-VGMKILGDVV 595 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lG------t~edfk~LV~aaH~-~GIkVILD~V 595 (807)
|-|..-..+|.-+++.|+|-|.++|+.+-. |+..|...|-..+++.+- +.+|.++||+.+|+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 334556788999999999999999999854 678999999999999887 78999999999996 5999999999
Q ss_pred eccccccc
Q 003613 596 LNHRCAHY 603 (807)
Q Consensus 596 ~NHtg~d~ 603 (807)
+||++.++
T Consensus 219 ~NHtAnns 226 (1521)
T KOG3625|consen 219 YNHTANNS 226 (1521)
T ss_pred hhccccCC
Confidence 99999874
No 53
>PLN02635 disproportionating enzyme
Probab=96.51 E-value=0.029 Score=66.06 Aligned_cols=59 Identities=19% Similarity=-0.009 Sum_probs=42.0
Q ss_pred ceeeeeeeeccCCCCC-CcHHHH-HHhHHHHHHcCCCEEEECCCCCCC-----CCCCCCcccCCccC
Q 003613 508 FEILCQGFNWESHKSG-RWYMEL-KEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLS 567 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~G-Gdl~GI-~ekLdYLk~LGvt~I~L~PIfes~-----s~hGYd~~Dy~~ID 567 (807)
..|+++-|.-.++ -| |||-.. .+-++.+++.|.+.++|+|+.... .++.|.+.+-+..|
T Consensus 30 ~Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~N 95 (538)
T PLN02635 30 AGILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGN 95 (538)
T ss_pred eEEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccC
Confidence 4677777654432 35 899664 478999999999999999998763 35667766644433
No 54
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.33 E-value=0.025 Score=63.19 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=78.5
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEECCCCCCCC-----CCCCCc--------ccCCccC--CCCCCHHHHHHHHHHHHHcC
Q 003613 525 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMP--------RDLYNLS--SRYGNIDELKDVVNKFHDVG 587 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGv--t~I~L~PIfes~s-----~hGYd~--------~Dy~~ID--p~lGt~edfk~LV~aaH~~G 587 (807)
+.+.+.+-++.+++.|| ++|+|-+-..... ...|.. .|=+..+ .+| .+.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~F---Pdp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRW---PNPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccC---CCHHHHHHHHHHCC
Confidence 46788999999999886 7899874221111 011211 0111111 122 26899999999999
Q ss_pred cEEEEeEeecccccccCcCCCccccc-----CCcCCCCCCcccCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHH
Q 003613 588 MKILGDVVLNHRCAHYQNQNGVWNIF-----GGRLNWDDRAVVADDPHFQGRGNKSS--GDNFHAAPNIDHSQDFVRKDI 660 (807)
Q Consensus 588 IkVILD~V~NHtg~d~~~~~~~w~~~-----~g~~~w~~~~~~~~~~~f~~~~~~~~--~~~~~~lpdLn~~np~Vr~~i 660 (807)
+||++=+.+ ++..+.......+..+ .+.+..+ ..+..+. .+-.....-+|+.||++++..
T Consensus 99 ~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~------------~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww 165 (340)
T cd06597 99 VKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQR------------GVGKPYRIPGQWFPDSLMLDFTNPEAAQWW 165 (340)
T ss_pred CEEEEEecC-ccccccccccccchhHHHHHHCCEEEEc------------CCCCccccccccCCCceeecCCCHHHHHHH
Confidence 999984433 2221110000000000 0000000 0111110 010112234788999999999
Q ss_pred HHHHHHHHHhcCccEEEEcccc
Q 003613 661 KEWLCWLRNEIGYDGWRLDFVR 682 (807)
Q Consensus 661 ~~~l~~Wi~e~GVDGfRlDaa~ 682 (807)
.+.++.+++++|||||.+|+..
T Consensus 166 ~~~~~~~~~~~Gidg~w~D~~E 187 (340)
T cd06597 166 MEKRRYLVDELGIDGFKTDGGE 187 (340)
T ss_pred HHHHHHHHHhcCCcEEEecCCC
Confidence 9999999978999999999875
No 55
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.28 E-value=0.053 Score=61.81 Aligned_cols=134 Identities=19% Similarity=0.120 Sum_probs=81.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCC-CcccCCccC-CCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGY-MPRDLYNLS-SRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGY-d~~Dy~~ID-p~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
+-+.|.+.++.++++|++.+.|===+....+..+ ...|+ .+| .+|-. -|+.|++.+|++||+.-|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP~--Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFPN--GLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTSTT--HHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhCC--cHHHHHHHHHHCCCeEEEEeccccccch
Confidence 4568888899999999999887432221111111 12233 344 35533 5999999999999999998777666666
Q ss_pred cCc--CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003613 603 YQN--QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (807)
Q Consensus 603 ~~~--~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDa 680 (807)
+.- .+++|.... +..... . ....--||..+|+|++++.+.+..++++.|||.+.+|+
T Consensus 133 S~l~~~hPdw~l~~--------------~~~~~~----~---~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~ 191 (394)
T PF02065_consen 133 SDLYREHPDWVLRD--------------PGRPPT----L---GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDF 191 (394)
T ss_dssp SCHCCSSBGGBTCC--------------TTSE-E----C---BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred hHHHHhCccceeec--------------CCCCCc----C---cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 531 222332110 000000 0 00112389999999999999999988899999999999
Q ss_pred cc
Q 003613 681 VR 682 (807)
Q Consensus 681 a~ 682 (807)
-.
T Consensus 192 n~ 193 (394)
T PF02065_consen 192 NR 193 (394)
T ss_dssp TS
T ss_pred cc
Confidence 74
No 56
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.10 E-value=0.058 Score=59.26 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=85.5
Q ss_pred CcHHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
.+-+.+.+.++.+++.| ++.|||-.=+.. +|.-.| +..|+ +|-+ .++|++++|++||+|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 45678899999999999 777888754431 121122 55663 6654 689999999999999998875 565
Q ss_pred cccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003613 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (807)
Q Consensus 601 ~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDa 680 (807)
.++. .|.... ...+.-.. .+...+.. ..|. ....-+|+.||++++.+.+.++.++ +.|||||-+|+
T Consensus 92 ~~~~----~~~e~~-~~g~~v~~--~~g~~~~~----~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~ 157 (308)
T cd06593 92 QKSP----LFKEAA-EKGYLVKK--PDGSVWQW----DLWQ--PGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDF 157 (308)
T ss_pred CCch----hHHHHH-HCCeEEEC--CCCCeeee----cccC--CCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCC
Confidence 5432 111000 00000000 00000000 0011 1223578999999999999999888 79999999998
Q ss_pred ccch
Q 003613 681 VRGF 684 (807)
Q Consensus 681 a~~f 684 (807)
...+
T Consensus 158 ~e~~ 161 (308)
T cd06593 158 GERI 161 (308)
T ss_pred CCCC
Confidence 8643
No 57
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.05 E-value=0.16 Score=56.29 Aligned_cols=131 Identities=13% Similarity=0.176 Sum_probs=82.4
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCC---CCcccC--CccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDL--YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hG---Yd~~Dy--~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
++=..+.+.|+.+++-|+|+|-+- ++ ..+| |+...- ..+...-....++++|++.+|++||.+|.=+|.=-
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID--vK--dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk 85 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID--VK--DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK 85 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE--Ee--cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec
Confidence 344567888999999999999874 12 2223 222110 01111111246899999999999999999887521
Q ss_pred cccccC--cCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003613 599 RCAHYQ--NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (807)
Q Consensus 599 tg~d~~--~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGf 676 (807)
|.. ..++.|.... ..-..|.+..+..-+|-.+++||+|++++++... .+|+|..
T Consensus 86 ---D~~la~~~pe~av~~--------------------~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEI 141 (316)
T PF13200_consen 86 ---DPVLAEAHPEWAVKT--------------------KDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEI 141 (316)
T ss_pred ---ChHHhhhChhhEEEC--------------------CCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEE
Confidence 110 1122232100 0001122233345688889999999999999998 8999999
Q ss_pred EEcccc
Q 003613 677 RLDFVR 682 (807)
Q Consensus 677 RlDaa~ 682 (807)
-||-++
T Consensus 142 qfDYIR 147 (316)
T PF13200_consen 142 QFDYIR 147 (316)
T ss_pred Eeeeee
Confidence 999984
No 58
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.01 E-value=0.059 Score=63.85 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC-CCCCCc----ccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMP----RDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s-~hGYd~----~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.......+.|+.|+.+-||+|++==.+.-.. .-+-.. ..|.++.-+-=..+.+|++|++||+.||+.|.=.-+.-
T Consensus 115 ~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 115 KSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 3577899999999999999999742221110 000000 11222222333467899999999999999998544442
Q ss_pred cccccC--cCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCccE
Q 003613 599 RCAHYQ--NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (807)
Q Consensus 599 tg~d~~--~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDG 675 (807)
...+.. .....|..|.... . ..+ ..+.....+.. +--+|-.|+..|++|++-+...++.+|+||
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~---------~-~~~---~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG 261 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDS---------H-SNQ---DTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDG 261 (559)
T ss_dssp EETT--S--SS-GGBEEESSS---------B-TSB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--E
T ss_pred cccCcccccCCchhhhhhccC---------C-Ccc---ceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCce
Confidence 222211 0112232221100 0 000 00000001110 223678899999999999999999999999
Q ss_pred EEEcccc
Q 003613 676 WRLDFVR 682 (807)
Q Consensus 676 fRlDaa~ 682 (807)
|-+|...
T Consensus 262 ~hlDq~G 268 (559)
T PF13199_consen 262 WHLDQLG 268 (559)
T ss_dssp EEEE-S-
T ss_pred EeeeccC
Confidence 9999984
No 59
>PLN02316 synthase/transferase
Probab=95.71 E-value=0.21 Score=62.97 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=59.7
Q ss_pred CCeEEEEEEecCCCCceEEEEEecC-----CCceEEEeeeeecCCCCCCccCCCCCCCCCCccccccccccccccccc-C
Q 003613 96 EGKMFVRLQKGKDEKNWQLSVGCNI-----PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLA-E 169 (807)
Q Consensus 96 ~~~~~v~v~~~~~~~~~~v~~~td~-----~~~~~lHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~~T~f~~~~-~ 169 (807)
++.+.|.=..-+.+...+|.+-.+. ..++++|=|. ..|...+ .-+.+.++. .
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-------N~W~~~~---------------f~~~~~k~~~~ 197 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-------NGWRWKS---------------FTERLEKTELG 197 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-------ccccccc---------------cceeccccccC
Confidence 3444444334455566677665544 4458899777 6776632 112333333 3
Q ss_pred CCceeEEEEeecCCCCceeEEEEEEeCCccchhccCCcceeeeccccc
Q 003613 170 GDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYL 217 (807)
Q Consensus 170 ~~~~~~~~i~~~~d~~~~~i~FVlk~~~~~~W~~~~G~df~v~l~~~~ 217 (807)
|+- -..++.++ +....|.||+.++++ .|=||+|.||++++....
T Consensus 198 g~w-w~~~v~Vp--~~A~~ldfVf~~g~~-~yDNN~~~Df~~~V~~~~ 241 (1036)
T PLN02316 198 GDW-WSCKLHIP--KEAYKMDFVFFNGQN-VYDNNDHKDFCVEIEGGM 241 (1036)
T ss_pred CCe-EEEEEecC--ccceEEEEEEeCCcc-ccccCCCCceEEEeCCCC
Confidence 421 12455555 455559999999865 899999999999997554
No 60
>PLN02316 synthase/transferase
Probab=95.35 E-value=0.6 Score=59.14 Aligned_cols=220 Identities=13% Similarity=0.210 Sum_probs=112.1
Q ss_pred CCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeEEEEEEeCC---
Q 003613 121 PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEE--- 197 (807)
Q Consensus 121 ~~~~~lHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~~T~f~~~~~~~~~~~~~i~~~~d~~~~~i~FVlk~~~--- 197 (807)
..++.||+|. ..|.-..+-. .+-+.+. ..+|+ ....++.+-....-|.||+-++.
T Consensus 345 ~~~v~i~gg~-------N~W~~~~~~~---------~~~~~~~---~~~g~---ww~a~v~vP~~A~~mDfVFsdg~~~~ 402 (1036)
T PLN02316 345 STEIWIHGGY-------NNWIDGLSIV---------EKLVKSE---EKDGD---WWYAEVVVPERALVLDWVFADGPPGN 402 (1036)
T ss_pred CCcEEEEEeE-------cCCCCCCccc---------ceeeccc---CCCCC---EEEEEEecCCCceEEEEEEecCCccc
Confidence 4459999999 7887654320 1111111 11452 44444444566788999999984
Q ss_pred ccchhccCCcceeeecccccccCCccccccccccccC----chHHHHHHhhhcccCCCCCCCCCCcccchhh--hhhhhh
Q 003613 198 TGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWP----GALGQLSKMILKADTSQSGIQDSSSESCELK--QENKHL 271 (807)
Q Consensus 198 ~~~W~~~~G~df~v~l~~~~~~~~~~~~~~~~~~~w~----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 271 (807)
.+.|=+|+|.||++++++...+.. -|- -.+++|...-...|.......+. .+.-+ .+.|.+
T Consensus 403 ~~~yDNn~~~Dyh~~v~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~---~a~~~ae~k~~~~ 469 (1036)
T PLN02316 403 ARNYDNNGRQDFHAIVPNNIPEEL----------YWVEEEHQIYRKLQEERRLREEAIRAKAEK---TARMKAEMKEKTL 469 (1036)
T ss_pred ccccccCCCcceeeecCCCCchhh----------hhHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 347999999999999997653221 121 12233322111111110000000 00000 011222
Q ss_pred hhhhhcccchhhheecceeEEEEeeccCCC-ceEEEEE-----cCCCCCeEEEeeeccCCCCCcccCCCCCCCCcceeec
Q 003613 272 EGFYEELPIVKEIIIENTVSVSVRKCPETA-KTLLNLE-----TDLTGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKN 345 (807)
Q Consensus 272 ~~~~e~~~~~k~~~~~~~~~v~~~~~~~~~-~~~v~~~-----td~~~~~vlHWgv~~~~~~~W~~Pp~~~~p~~s~~~~ 345 (807)
+.|. ..+.-+-.+....++.| .++|.-- -.....|-||||--+ |.-+..+++|-
T Consensus 470 ~~~l---------~~~~~~~~teP~~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~Nr-----Wth~~~~~~~~------ 529 (1036)
T PLN02316 470 KMFL---------LSQKHIVYTEPLEVQAGTTVTVLYNPANTVLNGKPEVWFRGSFNR-----WTHRLGPLPPQ------ 529 (1036)
T ss_pred Hhhh---------hccceEEEecCCCCCCCCEEEEEECCCCCcCCCCceEEEEccccC-----cCCCCCCCCce------
Confidence 2111 11111111122121222 1222110 124468899999887 99887777664
Q ss_pred ccccccCccccCCCcceeEEEecCccceeEEEEEcC--CccccccCCcceEEeCCCC
Q 003613 346 KALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLN--ENTWLKCMENDFYIPLTSS 400 (807)
Q Consensus 346 ~a~eTpf~~~~~~~~~~~~~~l~~~~~g~~FVl~~~--~~~W~k~~g~df~i~l~~~ 400 (807)
-|...++|......+++...---|=||+-.. +++|=+++|.||+++...+
T Consensus 530 -----~m~~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~~~~dyh~~v~g~ 581 (1036)
T PLN02316 530 -----KMVPADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNRNGLDYHIPVFGG 581 (1036)
T ss_pred -----eeeecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCCCCcCCcccccCC
Confidence 1222334432334466644333478888664 6788888999999999854
No 61
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.18 E-value=0.19 Score=55.60 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=76.8
Q ss_pred HHHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 526 l~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
-+.|.+-++.+++.|| ++|||-+=+.......+ . -+..|+ +|- +.++||+++|++|+||++-+. -+++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~-P~i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--Y-VFNWNKDRFP---DPAAFVAKFHERGIRLAPNIK-PGLLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--e-eeecCcccCC---CHHHHHHHHHHCCCEEEEEeC-CcccCC
Confidence 4578888889988875 88988642221100001 1 144453 454 577999999999999999543 334433
Q ss_pred cCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccc
Q 003613 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (807)
Q Consensus 603 ~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa 681 (807)
++ .|..... ..+. +..... ..+..+..+. ...-+|+.||+.++...+.++..+.+.|||||-+|+.
T Consensus 101 ~~----~y~e~~~-~g~~---v~~~~g-----~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 101 HP----RYKELKE-AGAF---IKPPDG-----REPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred CH----HHHHHHH-CCcE---EEcCCC-----CCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 21 1110000 0000 000000 0000111111 1124788999999999998865555899999999987
Q ss_pred c
Q 003613 682 R 682 (807)
Q Consensus 682 ~ 682 (807)
.
T Consensus 168 E 168 (317)
T cd06599 168 E 168 (317)
T ss_pred C
Confidence 4
No 62
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.13 E-value=0.072 Score=47.90 Aligned_cols=66 Identities=23% Similarity=0.506 Sum_probs=36.1
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCcccccccccccccccccCCCceeEEEEeecCCCCceeEEEEEEeCCccchhc
Q 003613 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (807)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~Pp~~~~P~gt~~~~~~A~~T~f~~~~~~~~~~~~~i~~~~d~~~~~i~FVlk~~~~~~W~~ 203 (807)
+.||+|. ..|..+|.- . +.+ .+.+-. .| .-..+|.++ +. -..|+||++++. +.|=+
T Consensus 21 v~~~~G~-------n~W~~~~~~------~--m~~-~~~~~~---~~--~~~~tv~vP-~~-a~~~dfvF~dg~-~~wDN 76 (87)
T PF03423_consen 21 VHLHGGF-------NRWTHVPGF------G--MTK-MCVPDE---GG--WWKATVDVP-ED-AYVMDFVFNDGA-GNWDN 76 (87)
T ss_dssp EEEEETT-------S-B-SSS-E------E---EE-ESS------TT--EEEEEEE---TT-TSEEEEEEE-SS-S-EES
T ss_pred EEEEecC-------CCCCcCCCC------C--cce-eeeeec---CC--EEEEEEEEc-CC-ceEEEEEEcCCC-CcEeC
Confidence 8899998 689766432 1 111 111111 12 233566655 33 457999999994 48999
Q ss_pred cCCcceeeec
Q 003613 204 HRGRDFKVPL 213 (807)
Q Consensus 204 ~~G~df~v~l 213 (807)
|+|.||++++
T Consensus 77 N~g~nY~~~V 86 (87)
T PF03423_consen 77 NNGANYHFPV 86 (87)
T ss_dssp TTTS-EEEES
T ss_pred CCCccEEEEc
Confidence 9999999985
No 63
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=93.38 E-value=0.15 Score=56.52 Aligned_cols=139 Identities=16% Similarity=0.218 Sum_probs=80.3
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEECCCCCC--CCCCCCCc-ccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 525 WYMELKEKATELSSLGF--SVIWLPPPTES--VSPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGv--t~I~L~PIfes--~s~hGYd~-~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
..+.+.+-++.+++.|| ++|||- .... ....||.. .| +..|+ +|- +.++||+++|++|+|||+- |-.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~-i~P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTY-INPY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEE-ecCc
Confidence 57789999999998765 778885 3311 01112211 11 34554 453 4789999999999999994 4455
Q ss_pred cccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003613 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (807)
Q Consensus 599 tg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfR 677 (807)
+..++... |.. +....+ .+.+ + .+..+.+..+ ....-+|+.||++++...+.++..+.++|||||-
T Consensus 95 v~~~~~~~---y~~-~~~~g~----~vk~-~----~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w 161 (317)
T cd06594 95 LADDGPLY---YEE-AKDAGY----LVKD-A----DGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWM 161 (317)
T ss_pred eecCCchh---HHH-HHHCCe----EEEC-C----CCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEE
Confidence 55442110 110 000000 0000 0 0001111001 1124578899999999999888875589999999
Q ss_pred Ecccc
Q 003613 678 LDFVR 682 (807)
Q Consensus 678 lDaa~ 682 (807)
+|+..
T Consensus 162 ~D~~E 166 (317)
T cd06594 162 ADFGE 166 (317)
T ss_pred ecCCC
Confidence 99765
No 64
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=93.34 E-value=1 Score=54.76 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=74.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCC----CCCCcccCCcc-CCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSP----EGYMPRDLYNL-SSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~----hGYd~~Dy~~I-Dp~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
.-+.|...|+.|+++|+|+|||-..-...++ .-|-|.++.-+ ++-|. -+.-.+ +|++||+|..=+-+--.
T Consensus 332 q~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~~aw~l--~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 332 QDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---RVAWQL--RTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---HHHHHH--HHhhCCEEEEeccceee
Confidence 3578889999999999999999865443332 34555544333 11111 112222 89999999873322211
Q ss_pred ccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 003613 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (807)
Q Consensus 600 g~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlD 679 (807)
+-....+ ....+.. ...+. .. ...+ ...|+-.+|+||+.|.++...+.+.+.|||.-+|
T Consensus 407 ~~~~~~~--------~~~~~~~----~~~~~-----~~--~~~~--~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~ 465 (671)
T PRK14582 407 DLDPTLP--------RVKRLDT----GEGKA-----QI--HPEQ--YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH 465 (671)
T ss_pred ccCCCcc--------hhhhccc----cCCcc-----cc--CCCC--CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEec
Confidence 1100000 0000000 00000 00 0000 1238889999999999999999988899999986
Q ss_pred c
Q 003613 680 F 680 (807)
Q Consensus 680 a 680 (807)
-
T Consensus 466 D 466 (671)
T PRK14582 466 D 466 (671)
T ss_pred c
Confidence 4
No 65
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=93.23 E-value=0.15 Score=56.44 Aligned_cols=134 Identities=17% Similarity=0.163 Sum_probs=76.0
Q ss_pred CcHHHHHHhHHHHHHc--CCCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 524 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~L--Gvt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
.+-+.+.+-++.+++. -+++|+|---+ ....++ . -+..|+ +|- +.++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 3466788888888775 66888875211 111221 1 244453 454 457899999999999999443 4454
Q ss_pred cccCcCCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 601 AHYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 601 ~d~~~~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
.++. .|... .+....+. ....+ ...+. ....-+|+.||+.++...+.++..+.++|||||-+
T Consensus 92 ~~~~----~y~e~~~~g~~v~~~-----~g~~~-----~~~w~--g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~ 155 (319)
T cd06591 92 PETE----NYKEMDEKGYLIKTD-----RGPRV-----TMQFG--GNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWL 155 (319)
T ss_pred CCCh----hHHHHHHCCEEEEcC-----CCCee-----eeeCC--CCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 4331 11100 00000000 00000 00011 11235888999999988776655444899999999
Q ss_pred cccc
Q 003613 679 DFVR 682 (807)
Q Consensus 679 Daa~ 682 (807)
|+..
T Consensus 156 D~~E 159 (319)
T cd06591 156 DAAE 159 (319)
T ss_pred cCCC
Confidence 9986
No 66
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=93.17 E-value=0.16 Score=53.77 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=51.1
Q ss_pred ceeeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHHHHHHHHHHH
Q 003613 508 FEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~ 585 (807)
.++..++|++.- .... -+.+.++.|+++|+++|=|+-.++... ..+| .+++ ...+.|+++|++|++
T Consensus 6 ~~v~~~G~n~~w---~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~~ 73 (281)
T PF00150_consen 6 KPVNWRGFNTHW---YNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQA 73 (281)
T ss_dssp EBEEEEEEEETT---SGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHHH
T ss_pred CeEEeeeeeccc---CCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHHh
Confidence 466777777541 1112 677779999999999999875532111 1111 1111 235789999999999
Q ss_pred cCcEEEEeEeec
Q 003613 586 VGMKILGDVVLN 597 (807)
Q Consensus 586 ~GIkVILD~V~N 597 (807)
+||+||+|+--.
T Consensus 74 ~gi~vild~h~~ 85 (281)
T PF00150_consen 74 YGIYVILDLHNA 85 (281)
T ss_dssp TT-EEEEEEEES
T ss_pred CCCeEEEEeccC
Confidence 999999988443
No 67
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.07 E-value=0.44 Score=48.03 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=53.8
Q ss_pred eeeeeeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE
Q 003613 510 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (807)
Q Consensus 510 v~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk 589 (807)
.++|-++||. ..-=+-+.=.+.+.+++++||++|.|. ..+-...-+.+.+++.-.-..+..+-+..+.++|.+.||+
T Consensus 4 tF~q~~~~d~-~~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmk 80 (166)
T PF14488_consen 4 TFLQPWSWDI-HQNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMK 80 (166)
T ss_pred EEEccccchh-hcCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCE
Confidence 3555555544 111123455788999999999999976 1111122233444321122236678899999999999999
Q ss_pred EEEeEeec
Q 003613 590 ILGDVVLN 597 (807)
Q Consensus 590 VILD~V~N 597 (807)
|++-+-++
T Consensus 81 v~~Gl~~~ 88 (166)
T PF14488_consen 81 VFVGLYFD 88 (166)
T ss_pred EEEeCCCC
Confidence 99976555
No 68
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.83 E-value=0.63 Score=51.98 Aligned_cols=132 Identities=18% Similarity=0.211 Sum_probs=77.6
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+.+.++.+++.|| ++|||-.-+.. +|. .+..|+ +|- +.++|++++|++|+||++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYR---VFTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCC---ceeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45688888999998775 78888644332 222 134454 554 4589999999999999976433 3332
Q ss_pred ccCcCCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 602 HYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 602 d~~~~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
+.. ...|..- .+++. .. ..+..+.+..+. ..--+|+.||+.++...+.++.++ +.|||||-+
T Consensus 91 ~~~--~~~~~e~~~~g~~v-------~~-----~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~ 155 (339)
T cd06604 91 DPG--YDVYEEGLENDYFV-------KD-----PDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWN 155 (339)
T ss_pred CCC--ChHHHHHHHCCeEE-------EC-----CCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEee
Confidence 210 0001000 00000 00 000111110111 112368899999999999998888 899999999
Q ss_pred cccc
Q 003613 679 DFVR 682 (807)
Q Consensus 679 Daa~ 682 (807)
|+..
T Consensus 156 D~~E 159 (339)
T cd06604 156 DMNE 159 (339)
T ss_pred cCCC
Confidence 9864
No 69
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=92.52 E-value=0.23 Score=55.04 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=77.6
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+.+-++.+++.|| +.|||-.=+. .+|. .+..|+ +|- +.++||+++|++|+||++=+. -+++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~-P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVD-PGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEee-ccccC
Confidence 46688888888888664 7888763221 1221 233443 443 567999999999999999543 33433
Q ss_pred ccCcCCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 602 HYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 602 d~~~~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
+... ..+..- .+.+ +... .+..+.+..+. ...-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 91 ~~~~--~~~~~~~~~~~~-------v~~~-----~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~ 156 (317)
T cd06600 91 DQNY--SPFLSGMDKGKF-------CEIE-----SGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWL 156 (317)
T ss_pred CCCC--hHHHHHHHCCEE-------EECC-----CCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEe
Confidence 2110 001000 0000 0000 00000010111 1124788999999999999988887899999999
Q ss_pred cccc
Q 003613 679 DFVR 682 (807)
Q Consensus 679 Daa~ 682 (807)
|+..
T Consensus 157 D~~E 160 (317)
T cd06600 157 DMNE 160 (317)
T ss_pred eCCC
Confidence 9976
No 70
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=92.07 E-value=0.34 Score=56.98 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.+++++.+.||++||+||.|+.+-
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpig 221 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIY 221 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecc
Confidence 478889999999999999999874
No 71
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.74 E-value=0.59 Score=52.18 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.+.+..||+.|+|+|=|--. -.+. + .-+-+.+...+|.++|+++||+|+||+=+..
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw-v~P~----~--------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD 82 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW-VNPY----D--------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSD 82 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-T----T--------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSS
T ss_pred CCHHHHHHhcCCCeEEEEec-cCCc----c--------cccCCHHHHHHHHHHHHHCCCeEEEeecccC
Confidence 56789999999999876431 1111 1 4455788999999999999999999994443
No 72
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=91.55 E-value=0.37 Score=58.80 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCc--EEEEeEeec
Q 003613 574 DELKDVVNKFHDVGM--KILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GI--kVILD~V~N 597 (807)
.+++++.+.|+++|| +||.|+-+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478889999999999 679999873
No 73
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=91.19 E-value=0.56 Score=52.50 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=75.7
Q ss_pred HHHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHH--HHHHHHHHHcCcEEEEeEeecccc
Q 003613 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDEL--KDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 526 l~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edf--k~LV~aaH~~GIkVILD~V~NHtg 600 (807)
-+.+.+.++.+++.|| +.|||-.-+.. +|. -+..|+ +|- +. ++||+++|++|+||++=+. -|+.
T Consensus 23 ~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~-P~v~ 91 (339)
T cd06602 23 VDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR---DFTLDPVRFP---GLKMPEFVDELHANGQHYVPILD-PAIS 91 (339)
T ss_pred HHHHHHHHHHHHHhCCCcceEEECccccc----Ccc---ceecccccCC---CccHHHHHHHHHHCCCEEEEEEe-Cccc
Confidence 5678888888888664 77887532211 111 133333 232 34 8999999999999999654 3343
Q ss_pred cccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEc
Q 003613 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (807)
Q Consensus 601 ~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlD 679 (807)
.+.. ...+..+..-.. .. ..+.+ ..+..+.+..+ ....-+|+.||++++...+.++.++.++|||||-+|
T Consensus 92 ~~~~--~~~~~~~~e~~~-~g-~~v~~-----~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 162 (339)
T cd06602 92 ANEP--TGSYPPYDRGLE-MD-VFIKN-----DDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWID 162 (339)
T ss_pred cCcC--CCCCHHHHHHHH-CC-eEEEC-----CCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 3210 001111100000 00 00000 00111100000 111236889999999999999988877999999999
Q ss_pred ccc
Q 003613 680 FVR 682 (807)
Q Consensus 680 aa~ 682 (807)
+..
T Consensus 163 ~~E 165 (339)
T cd06602 163 MNE 165 (339)
T ss_pred CCC
Confidence 876
No 74
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=91.10 E-value=0.84 Score=53.96 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.+++++-+.|+.+||+||.|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 468888899999999999999874
No 75
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=0.8 Score=50.67 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=41.7
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEe
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V 595 (807)
......++-|+...+.||+-|..+=.......+ +-.+-|++|+++||+.||+||+|+-
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 445566777788888999999876332222111 2245699999999999999999983
No 76
>PRK10426 alpha-glucosidase; Provisional
Probab=90.61 E-value=1.3 Score=53.66 Aligned_cols=129 Identities=18% Similarity=0.269 Sum_probs=74.6
Q ss_pred HHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccC-------CccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEe
Q 003613 526 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-------YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (807)
Q Consensus 526 l~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy-------~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V 595 (807)
-+.+.+.++.+++.| +++|||- -+ +++...+| +..|+ +|- +.++||+++|++|+||++=+-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw-----~~~~~~~~g~~~~~~~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DW-----SGIRMTSFGKRLMWNWKWDSERYP---QLDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-cc-----cccccccccccccccceEChhhCC---CHHHHHHHHHHCCCEEEEEEc
Confidence 357888889999988 6899984 12 11111111 12332 232 578899999999999999754
Q ss_pred ecccccccC-----cCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003613 596 LNHRCAHYQ-----NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (807)
Q Consensus 596 ~NHtg~d~~-----~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e 670 (807)
+ |+..++. ..++.+-.. . +...|.. ..+.+.. .-+|+.||++++...+.++..+.+
T Consensus 291 P-~v~~~~~~y~e~~~~gy~vk~-------~-----~g~~~~~----~~~~~~~--~~~Dftnp~ar~Ww~~~~~~~~~~ 351 (635)
T PRK10426 291 P-YLASDGDLCEEAAEKGYLAKD-------A-----DGGDYLV----EFGEFYA--GVVDLTNPEAYEWFKEVIKKNMIG 351 (635)
T ss_pred C-ccCCCCHHHHHHHHCCcEEEC-------C-----CCCEEEe----EecCCCc--eeecCCCHHHHHHHHHHHHHHHhh
Confidence 4 3333221 011111000 0 0000100 0011111 247889999999998888655558
Q ss_pred cCccEEEEcccc
Q 003613 671 IGYDGWRLDFVR 682 (807)
Q Consensus 671 ~GVDGfRlDaa~ 682 (807)
.|||||-+|+..
T Consensus 352 ~Gvdg~w~D~~E 363 (635)
T PRK10426 352 LGCSGWMADFGE 363 (635)
T ss_pred cCCCEEeeeCCC
Confidence 999999999754
No 77
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.53 E-value=0.47 Score=53.55 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=40.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeec
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.++...+-|.-.+++||+.|+.+= ..+.. .=...+.|++|++.||+.||+||+|+-+.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL---------------~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL---------------HIPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC---------------CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 467778888888899999999761 11111 11235789999999999999999999543
No 78
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=89.37 E-value=2.1 Score=55.47 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCccEEEEcccc----chhHHHHHHHHHhcCCcEEEeccccC
Q 003613 643 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEPYFAVGEYWDS 708 (807)
Q Consensus 643 ~~~lpdLn~-----~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~----~f~~~~i~~~~~~~~~~~lvGE~w~~ 708 (807)
|++..+|++ .||.++++|.++.+...+ =.+|||+|.++ |+..-++.+.++..++.|+++|-+.+
T Consensus 473 WGDcVKLRYG~~peDsP~LW~~M~~Y~~~~Ak--iF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTG 545 (1464)
T TIGR01531 473 WGDSVKLRYGNKPEDSPYLWQHMKEYTEMTAR--IFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTG 545 (1464)
T ss_pred ccceeeeccCCCCcCCHHHHHHHHHHHHHHHH--hhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCC
Confidence 445566665 579999999999988874 68999999998 55555566655555679999999985
No 79
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=89.19 E-value=1.5 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
++++++.+.|+++||+||.|+.+-
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig 215 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG 215 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEeccce
Confidence 478999999999999999999864
No 80
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=89.09 E-value=1.5 Score=48.73 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccch
Q 003613 647 PNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (807)
Q Consensus 647 pdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~f 684 (807)
-.+|..+++.++.|.+.+...+ +.|+|||-+|.++.+
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 3578889999999998888777 899999999998744
No 81
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=88.44 E-value=1.3 Score=49.05 Aligned_cols=136 Identities=11% Similarity=0.027 Sum_probs=76.4
Q ss_pred cHHHHHHhHHHHHHcC--CCEEEECCCCCCC-C-CCCCCcccCCccC-CCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 525 WYMELKEKATELSSLG--FSVIWLPPPTESV-S-PEGYMPRDLYNLS-SRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 525 dl~GI~ekLdYLk~LG--vt~I~L~PIfes~-s-~hGYd~~Dy~~ID-p~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
+-+.+.+.++.+++.| +++|+|-.=+-.. . ...|. | +..| .+|- +.++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 3568888888888876 5788876422110 0 01111 1 3344 3554 4578999999999999997642 33
Q ss_pred ccccCcCCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003613 600 CAHYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (807)
Q Consensus 600 g~d~~~~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfR 677 (807)
..+++ .|... .+.. .... .....+. + ..+.+. .--+|+.||+.++...+.++.+. +.|||||-
T Consensus 95 ~~~~~----~y~e~~~~g~l-~~~~---~~~~~~~--~--~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w 159 (317)
T cd06598 95 LKNSK----NWGEAVKAGAL-LKKD---QGGVPTL--F--DFWFGN--TGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWW 159 (317)
T ss_pred cCCch----hHHHHHhCCCE-EEEC---CCCCEee--e--eccCCC--ccccCCCCHHHHHHHHHHHHHhh-hCCccEEE
Confidence 33321 11000 0000 0000 0000000 0 001111 22467789999999999888886 89999999
Q ss_pred Ecccc
Q 003613 678 LDFVR 682 (807)
Q Consensus 678 lDaa~ 682 (807)
+|+..
T Consensus 160 ~D~~E 164 (317)
T cd06598 160 GDLGE 164 (317)
T ss_pred ecCCC
Confidence 99974
No 82
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=87.70 E-value=0.93 Score=52.21 Aligned_cols=136 Identities=25% Similarity=0.353 Sum_probs=74.2
Q ss_pred cHHHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+.+-++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- +.++|++.+|++|+||++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 46688888888888665 66776644322 111 2 34443 343 7889999999999999998877 3443
Q ss_pred ccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003613 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (807)
Q Consensus 602 d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDa 680 (807)
+.. ....+..... ..+. ..+ ..+..+.+..+. ...-+|+.||++++...+.++.+++.+|||||-+|.
T Consensus 110 ~~~-~~~~~~~~~~-~~~~----v~~-----~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 178 (441)
T PF01055_consen 110 DSP-DYENYDEAKE-KGYL----VKN-----PDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDF 178 (441)
T ss_dssp TTT-B-HHHHHHHH-TT-B----EBC-----TTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEES
T ss_pred CCC-cchhhhhHhh-cCce----eec-----ccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeec
Confidence 322 0000100000 0000 000 001011111111 133577899999999999999999666999999999
Q ss_pred cc
Q 003613 681 VR 682 (807)
Q Consensus 681 a~ 682 (807)
..
T Consensus 179 ~E 180 (441)
T PF01055_consen 179 GE 180 (441)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 83
>PRK10658 putative alpha-glucosidase; Provisional
Probab=87.43 E-value=1.4 Score=53.88 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=73.8
Q ss_pred HHHHHhHHHHHHcCC--CEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 527 MELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 527 ~GI~ekLdYLk~LGv--t~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
+.+.+-++.+++.|| ++|+|-.-+.. +|.-.| +..|+ +|- +.++||+++|++|+||++=+.+ +++.++
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~----~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~s 353 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMK----EFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQKS 353 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhc----CCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCCc
Confidence 456777777777665 56776532211 121112 33443 333 4578999999999999986544 344332
Q ss_pred Cc-----CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEE
Q 003613 604 QN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (807)
Q Consensus 604 ~~-----~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfR 677 (807)
.. +++.+-.. ..+..+.+..| ....-+|+.||++++...+.++.++ +.|||||-
T Consensus 354 ~~f~e~~~~gy~vk~-------------------~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgfw 413 (665)
T PRK10658 354 PLFKEGKEKGYLLKR-------------------PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCFK 413 (665)
T ss_pred hHHHHHHHCCeEEEC-------------------CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEEE
Confidence 10 11111000 00111111111 1223478899999999999999988 89999999
Q ss_pred Ecccc
Q 003613 678 LDFVR 682 (807)
Q Consensus 678 lDaa~ 682 (807)
.|+..
T Consensus 414 ~D~gE 418 (665)
T PRK10658 414 TDFGE 418 (665)
T ss_pred ecCCc
Confidence 99754
No 84
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=86.94 E-value=1.3 Score=54.73 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCcEEEEeEeecccccccC-----cCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 003613 577 KDVVNKFHDVGMKILGDVVLNHRCAHYQ-----NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNID 650 (807)
Q Consensus 577 k~LV~aaH~~GIkVILD~V~NHtg~d~~-----~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdLn 650 (807)
++|++.+|++|||+|+=+.+. ...+++ ..+|.+-+ .+ .+..+.+..|. ...-+|
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k---------------~~----~g~~~~~~~w~~~~a~~D 383 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVK---------------DP----DGEIYQADFWPGNSAFPD 383 (772)
T ss_pred HHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEE---------------CC----CCCEeeecccCCcccccC
Confidence 499999999999999865443 222221 01111111 00 12222222333 344578
Q ss_pred CCCHHHHHHHHH-HHHHHHHhcCccEEEEcccc
Q 003613 651 HSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVR 682 (807)
Q Consensus 651 ~~np~Vr~~i~~-~l~~Wi~e~GVDGfRlDaa~ 682 (807)
+.||++|+...+ ....++ ++|||||-.|+..
T Consensus 384 Ftnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nE 415 (772)
T COG1501 384 FTNPDAREWWASDKKKNLL-DLGVDGFWNDMNE 415 (772)
T ss_pred CCCHHHHHHHHHHHHhHHH-hcCccEEEccCCC
Confidence 899999999984 556677 9999999999975
No 85
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=86.84 E-value=2 Score=52.75 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=46.4
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCccEEEEcccc----chhHHHHHHHHHhcCCcEEEeccccCC
Q 003613 643 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKDYLEATEPYFAVGEYWDSL 709 (807)
Q Consensus 643 ~~~lpdLn~-----~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~----~f~~~~i~~~~~~~~~~~lvGE~w~~~ 709 (807)
|.+..+|++ .+|+++++|.++...-. .=+||+|+|.++ |+..-++...++-.++.|+|+|-+.+.
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 444556666 46899999998875544 357999999998 555555554444445699999999763
No 86
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=86.75 E-value=1.4 Score=48.35 Aligned_cols=129 Identities=12% Similarity=0.138 Sum_probs=72.3
Q ss_pred cHHHHHHhHHHHHHcC--CCEEEECCCCCCC-C----CCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 525 WYMELKEKATELSSLG--FSVIWLPPPTESV-S----PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 525 dl~GI~ekLdYLk~LG--vt~I~L~PIfes~-s----~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
+.+.+.+-++.+++.| +++|||=-=+... . ..+|. -+..|+ +|- +.++||+++|++|+|||+-+.+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 4568888888888755 5778873321110 0 01221 244553 554 5689999999999999987766
Q ss_pred cccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003613 597 NHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (807)
Q Consensus 597 NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGf 676 (807)
.. +.+.. ...|..+.... .. +... ....-+|..||+.++...+.+..-+.++|||||
T Consensus 97 ~~-~~~~~--~~~y~~~~~~~------------~~----~~~~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~ 153 (292)
T cd06595 97 AD-GIRAH--EDQYPEMAKAL------------GV----DPAT----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFW 153 (292)
T ss_pred Cc-ccCCC--cHHHHHHHHhc------------CC----Cccc----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 42 21110 00111110000 00 0000 011246888999888766655444448999999
Q ss_pred EEcccc
Q 003613 677 RLDFVR 682 (807)
Q Consensus 677 RlDaa~ 682 (807)
=.|+..
T Consensus 154 W~D~~E 159 (292)
T cd06595 154 WLDWQQ 159 (292)
T ss_pred EecCCC
Confidence 999753
No 87
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=86.08 E-value=2.6 Score=44.83 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003613 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (807)
Q Consensus 572 t~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~ 651 (807)
+.+++++.++.+|++|+||++=+--+|.+.. | -..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~----------------------------~-----------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG----------------------------F-----------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC----------------------------c-----------------ccc
Confidence 5789999999999999999996533332211 0 001
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcccc-------------chhHHHHHHHHHhcC
Q 003613 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR-------------GFWGGYVKDYLEATE 697 (807)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~-------------~f~~~~i~~~~~~~~ 697 (807)
.+++-++.+.+.+..+++.+|+||+=+|.=. .....+++++++..+
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~ 142 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMG 142 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhC
Confidence 2344456666666667779999999998631 123356677776654
No 88
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.47 E-value=2.7 Score=47.49 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCC--CHHHHHHHHHHHHHcCcEEEEeEeecccccccCc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lG--t~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~ 605 (807)
.+.+.+.-++++|||+|-|..+.-+ .+.|.=| +-+.|.++++.|+++||+|||-.. .+...
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~P---- 73 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWS------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAPP---- 73 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHH------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS-----
T ss_pred HHHHHHHHHHHcCCCEEEEEEechh------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEec-ccccc----
Confidence 6788899999999999999876321 1222222 224588999999999999999664 22211
Q ss_pred CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----ccEEEEccc
Q 003613 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG----YDGWRLDFV 681 (807)
Q Consensus 606 ~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~G----VDGfRlDaa 681 (807)
.|-... ...... ....+.. .........+..+|.+++++...++.+.+.++ |-||-+|.=
T Consensus 74 ---~Wl~~~-~Pe~~~---------~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 74 ---AWLYDK-YPEILP---------VDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp ---HHHHCC-SGCCC----------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred ---cchhhh-cccccc---------cCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 221100 000000 0000000 01122234567789999998888877776554 778988864
No 89
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=85.28 E-value=12 Score=40.80 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=41.9
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
|-+++...+-+|+-+++|+..|.+.=-+... ..=...|+....+. .++++||+-|+++|++|+|
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~--~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGW--EKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS----TTT--TT-B-TT------HHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccc--cccccccccccCCc----cCHHHHHHHHHHcCCCEEE
Confidence 6789999999999999999999993222110 00123444445444 7999999999999999998
No 90
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=81.76 E-value=7.1 Score=42.03 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=42.8
Q ss_pred CcHHHHHHhHHHHHHc--CCCEEEECCCCCCCCCCCCCcccC-CccCC-CCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 524 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~L--Gvt~I~L~PIfes~s~hGYd~~Dy-~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+-+.+.+.++.+++. -+++|+|-.-+.... .++ +..|+ +|-+ .++||+.+|++|+||++-+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~------~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~ 86 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDGY------GDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWI 86 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccCC------ceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEe
Confidence 4567888889888885 456999876544321 111 24443 4544 6789999999999999944
No 91
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=81.15 E-value=2.4 Score=38.14 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=37.0
Q ss_pred CCeEEEeeeccCCCCCcccCCCCCCCCcceeecccccccCccccCCCcceeEEEecCccceeEEEEEcCCccccccCCcc
Q 003613 313 GDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMEND 392 (807)
Q Consensus 313 ~~~vlHWgv~~~~~~~W~~Pp~~~~p~~s~~~~~a~eTpf~~~~~~~~~~~~~~l~~~~~g~~FVl~~~~~~W~k~~g~d 392 (807)
..|.||+|.- .|..+|. +.+. +.| .+ ..+......|++...-..|-||++.++++|=+|+|.|
T Consensus 19 ~~v~~~~G~n-----~W~~~~~-~~m~------~~~-~~----~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDNN~g~n 81 (87)
T PF03423_consen 19 PNVHLHGGFN-----RWTHVPG-FGMT------KMC-VP----DEGGWWKATVDVPEDAYVMDFVFNDGAGNWDNNNGAN 81 (87)
T ss_dssp -EEEEEETTS------B-SSS--EE-E------EES-S-------TTEEEEEEE--TTTSEEEEEEE-SSS-EESTTTS-
T ss_pred CcEEEEecCC-----CCCcCCC-CCcc------eee-ee----ecCCEEEEEEEEcCCceEEEEEEcCCCCcEeCCCCcc
Confidence 4678899963 4987643 1111 111 00 0022233447775555579999999878999999999
Q ss_pred eEEeC
Q 003613 393 FYIPL 397 (807)
Q Consensus 393 f~i~l 397 (807)
|+++.
T Consensus 82 Y~~~V 86 (87)
T PF03423_consen 82 YHFPV 86 (87)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99975
No 92
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=80.82 E-value=3.4 Score=52.26 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=74.1
Q ss_pred HHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 526 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 526 l~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
-+.+.+-++.+++.| +++|||--=+- .+|.. |..|+ +|- +.++|++++|++|+|+|.=+.+ ++..+
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDidYm----~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d 268 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDIDYM----DGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAE 268 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehhhh----cCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccC
Confidence 467888888888766 47788752211 23322 45554 564 4589999999999999764322 22111
Q ss_pred cCcCCCcccccCC---cCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 603 YQNQNGVWNIFGG---RLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 603 ~~~~~~~w~~~~g---~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
..|..+.. ...|- .. ..+..+.+..|.+ ..-+|+.||++++...+.++.++ +.|||||=+
T Consensus 269 -----~gY~~y~eg~~~~~fv-----k~-----~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~ 332 (978)
T PLN02763 269 -----EGYFVYDSGCENDVWI-----QT-----ADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWN 332 (978)
T ss_pred -----CCCHHHHhHhhcCeeE-----EC-----CCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEc
Confidence 11211110 00010 00 0111111111211 12257789999999988888888 799999999
Q ss_pred ccc
Q 003613 679 DFV 681 (807)
Q Consensus 679 Daa 681 (807)
|+-
T Consensus 333 Dmn 335 (978)
T PLN02763 333 DMN 335 (978)
T ss_pred cCC
Confidence 984
No 93
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=80.03 E-value=3.2 Score=46.81 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcc
Q 003613 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (807)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GVDGfRlDa 680 (807)
.++..|+.+++.+..+++++|.||+-+|-
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDw 120 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDI 120 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcc
Confidence 46888888888777777899999999996
No 94
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=79.63 E-value=4.2 Score=44.96 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=35.4
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCc
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~ 605 (807)
-..-...+++||+||+|+|-+ |.|||..-=. +..+++.+.||.||+|+-.-+.+.+...
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd----~CM~~~~~aGIYvi~Dl~~p~~sI~r~~ 110 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRV-----------------YSVDPSKNHD----ECMSAFADAGIYVILDLNTPNGSINRSD 110 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS--H----HHHHHHHHTT-EEEEES-BTTBS--TTS
T ss_pred HHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHH----HHHHHHHhCCCEEEEecCCCCccccCCC
Confidence 345566689999999999994 6777775322 3344456689999999988766665433
Q ss_pred CCCcc
Q 003613 606 QNGVW 610 (807)
Q Consensus 606 ~~~~w 610 (807)
+...|
T Consensus 111 P~~sw 115 (314)
T PF03198_consen 111 PAPSW 115 (314)
T ss_dssp -----
T ss_pred CcCCC
Confidence 33334
No 95
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=77.86 E-value=4.7 Score=47.61 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=50.5
Q ss_pred eeeeeeeeccCCCCC-CcHH-HHHHhHHHHHHcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHH
Q 003613 509 EILCQGFNWESHKSG-RWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNID 574 (807)
Q Consensus 509 ~v~~~~F~Wd~~~~G-Gdl~-GI~ekLdYLk~LGvt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~e 574 (807)
.|+++-|.-. .+-| |||- .+.+-++.+++.|++.|+|+|+.... .++.|.+.+-+.+||.|=+.+
T Consensus 8 Gv~~~l~SL~-~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~alnplyI~l~ 75 (497)
T PRK14508 8 GILLHITSLP-GSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGNPLLIDLE 75 (497)
T ss_pred EEEeccccCC-CCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccChhhcChh
Confidence 4566655441 1124 8995 99999999999999999999998765 357999999999998876653
No 96
>PLN02950 4-alpha-glucanotransferase
Probab=76.62 E-value=8.1 Score=48.89 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=54.4
Q ss_pred eeeeeeeeccCCCC-C-CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC------CCCCCcccCCccCCCCCCHHHHH
Q 003613 509 EILCQGFNWESHKS-G-RWYMELKEKATELSSLGFSVIWLPPPTESVS------PEGYMPRDLYNLSSRYGNIDELK 577 (807)
Q Consensus 509 ~v~~~~F~Wd~~~~-G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s------~hGYd~~Dy~~IDp~lGt~edfk 577 (807)
.|.++-|.-.+..+ | |||..+.+-+|.+++.|.+.|+|+|+..... ...|.+.+-+.+||.|=+.+++-
T Consensus 263 Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 263 GVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred EEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 45666555444332 4 8999999999999999999999999987552 24899999999999998877663
No 97
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=76.56 E-value=4.1 Score=45.52 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=76.2
Q ss_pred cHHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+.+.++.+++.| ++.|||-.=+. .+|. .+..|+ +|- +.++||+++|++|+||++-+.+- +..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IKR 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-eec
Confidence 4668888888888766 47788763221 1222 245565 554 55889999999999999986543 222
Q ss_pred ccCcCCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hcCccEEE
Q 003613 602 HYQNQNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDGWR 677 (807)
Q Consensus 602 d~~~~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~--e~GVDGfR 677 (807)
+.. ...|... .++..-+. +...|.. ..+.+ ...-+|+.||++++...+.++..+. ..|+|||=
T Consensus 91 ~~~--~~~y~e~~~~g~~vk~~-----~g~~~~~----~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w 157 (339)
T cd06603 91 DDG--YYVYKEAKDKGYLVKNS-----DGGDFEG----WCWPG--SSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIW 157 (339)
T ss_pred CCC--CHHHHHHHHCCeEEECC-----CCCEEEE----EECCC--CcCCccCCChhHHHHHHHHHHHHhhcccCCCceEE
Confidence 210 0001000 00000000 0000100 00111 1234788899999999999988874 36999999
Q ss_pred Ecccc
Q 003613 678 LDFVR 682 (807)
Q Consensus 678 lDaa~ 682 (807)
+|+..
T Consensus 158 ~D~~E 162 (339)
T cd06603 158 NDMNE 162 (339)
T ss_pred eccCC
Confidence 99753
No 98
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.62 E-value=9.7 Score=44.39 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHHHhHHHHHHcCCCEEEEC--------------C-CCCCCCCCCCCcccCCccCCCCC-------------CHHHHH
Q 003613 526 YMELKEKATELSSLGFSVIWLP--------------P-PTESVSPEGYMPRDLYNLSSRYG-------------NIDELK 577 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~--------------P-Ifes~s~hGYd~~Dy~~IDp~lG-------------t~edfk 577 (807)
.+.|.+-+|.+...++|.++|- | +.+..+.+++...+...+-|.+| |.+|++
T Consensus 21 ~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~ 100 (445)
T cd06569 21 KETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYI 100 (445)
T ss_pred HHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHHH
Confidence 6688888888888889988873 1 01112223333323222222222 789999
Q ss_pred HHHHHHHHcCcEEEEeE-eeccccc
Q 003613 578 DVVNKFHDVGMKILGDV-VLNHRCA 601 (807)
Q Consensus 578 ~LV~aaH~~GIkVILD~-V~NHtg~ 601 (807)
+||+-|+++||.||-.+ ++-|+..
T Consensus 101 eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 101 EILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHcCCEEEEccCCchhHHH
Confidence 99999999999999887 4677764
No 99
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=73.38 E-value=9.4 Score=41.87 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=36.7
Q ss_pred HHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCcEEEEeEee
Q 003613 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
-.+.|.-||.-||+.|-|--.. ++|+.. =++..|+ .+-.-++.++|.+.||||++|+-+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwn-----dP~dsn----gn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWN-----DPYDSN----GNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEec-----CCccCC----CCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 3556889999999997664221 111110 1122233 445556777888999999999943
No 100
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=73.14 E-value=9.1 Score=42.87 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=70.3
Q ss_pred cHHHHHHhHHHHHHcC--CCEEEECCCCCCCCCCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LG--vt~I~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+.+-++.+++.+ +++|||-.=+. .+| -.+..|+ +|-+ .++|++++|++|+|||+-+.+- +.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~---~~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~- 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNY---RTFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS- 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCC---CceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee-
Confidence 4567777788777765 57888764322 122 1244554 5644 4789999999999998865321 11
Q ss_pred ccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccc
Q 003613 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (807)
Q Consensus 602 d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa 681 (807)
.+. .|. ..... +|+.||++++...+..+.+. +.|||||=+|+.
T Consensus 90 -----------~g~--~~~---------------------~~~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 90 -----------YGG--GLG---------------------SPGLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred -----------cCc--cCC---------------------CCcee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 000 110 00112 45679999998877777777 789999999985
Q ss_pred c
Q 003613 682 R 682 (807)
Q Consensus 682 ~ 682 (807)
.
T Consensus 133 E 133 (332)
T cd06601 133 T 133 (332)
T ss_pred C
Confidence 3
No 101
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=71.99 E-value=23 Score=39.68 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
..++.....+.=|+..|..-...-+....+|. -.+.+-+ .+.||+|++++|++|-++++- ++|.|...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~Q--L~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQ--LWHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEE--EE--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceee--cccccccc
Confidence 44445555556688887765443333211111 1111223 468999999999999999986 57888764
No 102
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=71.91 E-value=47 Score=37.33 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=63.7
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcC
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQ 606 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~ 606 (807)
...+-+.-+|++|+..|-|+--.-.. .-+.=..++|..++ .=+..+-+++|+++|+++|||+.+ .-|..
T Consensus 92 D~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~krDiv~El~~A~rk~Glk~G~---Y~S~~------ 161 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPKRDIVGELADACRKYGLKFGL---YYSPW------ 161 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGTS-HHHHHHHHHHHTT-EEEE---EEESS------
T ss_pred CHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCCCCHHHHHHHHHHHcCCeEEE---Eecch------
Confidence 45566788999999999987433211 11111122333333 223458899999999999999998 21211
Q ss_pred CCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCccEEEEcccc
Q 003613 607 NGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH-SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (807)
Q Consensus 607 ~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~-~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~ 682 (807)
+|......... ..... . .++... ....+.+++..-++.++.+|.+|.+=+|..-
T Consensus 162 -----------dw~~~~~~~~~-----~~~~~---~---~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~ 216 (346)
T PF01120_consen 162 -----------DWHHPDYPPDE-----EGDEN---G---PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW 216 (346)
T ss_dssp -----------SCCCTTTTSSC-----HCHHC---C-----HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT
T ss_pred -----------HhcCcccCCCc-----cCCcc---c---ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC
Confidence 11110000000 00000 0 000000 0123455777788899999999999999975
No 103
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=71.55 E-value=33 Score=37.91 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003613 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (807)
Q Consensus 572 t~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~ 651 (807)
+.+++++-|+.||++|+|||+-+ |.. .. . ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~-----------------~~--------------~------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA-----------------NG--------------H------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC-----------------CC--------------c------------ccc
Confidence 56789999999999999999854 110 00 0 012
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEccc
Q 003613 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (807)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa 681 (807)
.++.-++.+.+.+..+++++|+||+-+|-=
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 345667788888888888999999999974
No 104
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=70.57 E-value=63 Score=35.42 Aligned_cols=121 Identities=21% Similarity=0.351 Sum_probs=74.9
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCc
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~ 605 (807)
++-+-.++..|.+-+++.|-+=|-..... ..=.+.+++|.+.+ .|.++|.=+-+-....-.
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~~g~~-------------~~~~~~eelr~~~~----gg~~pIAYlsIg~ae~yR-- 89 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSYCGPF-------------NTPWTIEELRTKAD----GGVKPIAYLSIGEAESYR-- 89 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccccCCC-------------CCcCcHHHHHHHhc----CCeeEEEEEechhhhhhh--
Confidence 34456778889999999998877432222 22245677777654 578888776665443221
Q ss_pred CCCccccc--CCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEccccc
Q 003613 606 QNGVWNIF--GGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 683 (807)
Q Consensus 606 ~~~~w~~~--~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~ 683 (807)
..|... .+..+|-. ..+|.+.+ + =.+.+..|+-++.+...+..++ +.|+||.-||.++.
T Consensus 90 --~Ywd~~w~~~~p~wLg----~edP~W~G--n----------y~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~ 150 (300)
T COG2342 90 --FYWDKYWLTGRPDWLG----EEDPEWPG--N----------YAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDA 150 (300)
T ss_pred --hHhhhhhhcCCccccc----CCCCCCCC--C----------ceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeech
Confidence 112110 01112211 12233321 1 1456678999999999999999 99999999999985
Q ss_pred h
Q 003613 684 F 684 (807)
Q Consensus 684 f 684 (807)
+
T Consensus 151 y 151 (300)
T COG2342 151 Y 151 (300)
T ss_pred H
Confidence 5
No 105
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=70.46 E-value=11 Score=46.47 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=57.3
Q ss_pred ceeeeeeeeccCCCC-C-CcHHHHHHhHHHHHHcCCCEEEECCCCCC-----CCCCCCCcccCCccCCCCCCHHHHHHHH
Q 003613 508 FEILCQGFNWESHKS-G-RWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVV 580 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~-G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes-----~s~hGYd~~Dy~~IDp~lGt~edfk~LV 580 (807)
..+++|-|.-.+..+ | |||..+.+-++.+++.|.+.+.|+|+... ..++.|.+.+-+.+||.|=+.+.+-++.
T Consensus 144 wGv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 144 WGACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred eEEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 456666665444322 4 89999999999999999999999999853 3578999999999999998887766553
No 106
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.42 E-value=40 Score=37.50 Aligned_cols=122 Identities=13% Similarity=0.173 Sum_probs=70.4
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC-----CCCCCHHHHHHHHHHHHHcCcEEEEeE-eeccc
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 599 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID-----p~lGt~edfk~LV~aaH~~GIkVILD~-V~NHt 599 (807)
.+.|.+.||.++.+++|.+++-= .+.. .+++....|=.+- ..+=|.+|+++||+-|.++||.||-.+ ++.|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hl-tDd~-~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHL-TDDQ-GFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEE-ecCC-CceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 67888999999999999887731 0110 1122111121111 112388999999999999999999887 45677
Q ss_pred ccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003613 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (807)
Q Consensus 600 g~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~ 669 (807)
..-.. .|..... ....+.. ...++. .-+.||..+|++.+++.+++..+++
T Consensus 95 ~a~~~----~ypel~~-----------~~~~~~~----~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 95 SAIAV----AYPELAS-----------GPGPYVI----ERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred HHHHH----hCHHhcc-----------CCCcccc----cccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 54210 0000000 0000000 000111 1135889999999999998877774
No 107
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=69.38 E-value=8 Score=44.47 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=41.3
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCc-cCCCCCC---HHHHHHHHHHHHHcCcEEEEeE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYN-LSSRYGN---IDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~-IDp~lGt---~edfk~LV~aaH~~GIkVILD~ 594 (807)
-.++-+.++++.||++|=++= +|...-.+. .+|.+=. ..-+.+.|+.|.++||+|++|+
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi--------~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPI--------GYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhhHHHHHHHcCCcEEEccc--------chhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 357778999999999999863 333310111 4555432 2356777999999999999997
No 108
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=69.16 E-value=8.7 Score=36.24 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=32.5
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
-+.+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 457888899999999999999874 4456788899999999985
No 109
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=68.00 E-value=19 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
++++++-+.|+.+||.+|.|+.+.
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~ 233 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVG 233 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccce
Confidence 466777777888999999999886
No 110
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=67.16 E-value=5.3 Score=44.44 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+.|..+|++|+|+|-.-=.+....... ...|| -...+|+.+++.|+++||.|||-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df-------~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDF-------TGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBT-TB----------SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCC-Ccccc-------cchhhHHHHHHHHHHcCcEEEecc
Confidence 5778889999999998753332111100 12232 224789999999999999999964
No 111
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=66.99 E-value=39 Score=37.55 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=70.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEEC--C--CCCCCC-----C-CCCC------cccCCcc--CCCCCCHHHHHHHHHHHHHcC
Q 003613 526 YMELKEKATELSSLGFSVIWLP--P--PTESVS-----P-EGYM------PRDLYNL--SSRYGNIDELKDVVNKFHDVG 587 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~--P--Ifes~s-----~-hGYd------~~Dy~~I--Dp~lGt~edfk~LV~aaH~~G 587 (807)
.+.|.+-|+.+..+++|.++|- = .++... . ..|. +..+... ...+=|.+|+++||+-|.++|
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~rg 95 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHcC
Confidence 6788888999999999999981 1 011110 0 0000 0001111 122238999999999999999
Q ss_pred cEEEEeE-eecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003613 588 MKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCW 666 (807)
Q Consensus 588 IkVILD~-V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~ 666 (807)
|.||-.+ ++-|+..--.. +.... .. .. ........||..+|++.+++.+++..
T Consensus 96 I~vIPEID~PGH~~a~~~~----~pel~-----------~~-------~~----~~~~~~~~l~~~~~~t~~f~~~l~~E 149 (326)
T cd06564 96 VNIIPEIDSPGHSLAFTKA----MPELG-----------LK-------NP----FSKYDKDTLDISNPEAVKFVKALFDE 149 (326)
T ss_pred CeEeccCCCcHHHHHHHHh----hHHhc-----------CC-------Cc----ccCCCcccccCCCHHHHHHHHHHHHH
Confidence 9999877 45666432100 00000 00 00 00112235788999999999999988
Q ss_pred HHHhcC
Q 003613 667 LRNEIG 672 (807)
Q Consensus 667 Wi~e~G 672 (807)
.++-+.
T Consensus 150 ~~~~f~ 155 (326)
T cd06564 150 YLDGFN 155 (326)
T ss_pred HHHhcC
Confidence 885443
No 112
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=66.79 E-value=38 Score=42.04 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=76.4
Q ss_pred CcHHHHHHhHHHHHHcCCC--EEEECCCCCCCCCCCCC--cccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeec-c
Q 003613 524 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYM--PRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN-H 598 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt--~I~L~PIfes~s~hGYd--~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~N-H 598 (807)
+.+..+++..++.+++||. .+|.- --|. -.||.-=.-.|++ ++++++.+|++|+|+|+=+-++ +
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~D--------iDyMd~ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVID--------IDYMDGYKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeee--------hhhhhcccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccc
Confidence 5688999999999999987 66632 1122 2343322345666 9999999999999988743321 1
Q ss_pred cccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCC-CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 003613 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNK-SSGDNFH-AAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (807)
Q Consensus 599 tg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~-~~~~~~~-~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGf 676 (807)
+... .+.|..-.....|-. + .. +.. ..+..+. ...=+|+.||.+.....+-++..-++.++||+
T Consensus 377 ~~~~----y~~y~~g~~~~v~I~-----~---~~--g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~ 442 (805)
T KOG1065|consen 377 TNSS----YGPYDRGVAKDVLIK-----N---RE--GSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGF 442 (805)
T ss_pred cCcc----chhhhhhhhhceeee-----c---cc--CchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccce
Confidence 1111 111111000001100 0 00 000 1111121 12235667888888887777777778999999
Q ss_pred EEcccc
Q 003613 677 RLDFVR 682 (807)
Q Consensus 677 RlDaa~ 682 (807)
=+|+-.
T Consensus 443 wiDmnE 448 (805)
T KOG1065|consen 443 WIDMNE 448 (805)
T ss_pred EEECCC
Confidence 999943
No 113
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=64.70 E-value=16 Score=45.18 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=54.0
Q ss_pred eeeeeeeeccCCCC-C-CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC-----C-CCCCcccCCccCCCCCCHHHHH
Q 003613 509 EILCQGFNWESHKS-G-RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (807)
Q Consensus 509 ~v~~~~F~Wd~~~~-G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s-----~-hGYd~~Dy~~IDp~lGt~edfk 577 (807)
.|.++-|.-.+..+ | |||-.+.+-+|.+++.|.+.|+|+|+..... . ..|.+.+-+.+||.|=+.+.+.
T Consensus 63 Gill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 63 GMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred eeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 45666665444432 4 7898899999999999999999999987642 2 5899999999999988876663
No 114
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.38 E-value=24 Score=38.96 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHHHcCCCEEEECC--CCCCCCCCCCCcccCCccC--CCCCCHHHHHHHHHHHHHcCcEEEEeE-eecccc
Q 003613 526 YMELKEKATELSSLGFSVIWLPP--PTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHRC 600 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~P--Ifes~s~hGYd~~Dy~~ID--p~lGt~edfk~LV~aaH~~GIkVILD~-V~NHtg 600 (807)
.+-|.+.++.++.+|+|.++|-= -|+-. ++-.+. ...=|.+|+++|++-|.++||.||-.+ ++-|+.
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~--------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYE--------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecC--------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 67889999999999999998721 11111 111121 112278999999999999999999765 245553
No 115
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=63.02 E-value=9.3 Score=42.41 Aligned_cols=129 Identities=12% Similarity=0.211 Sum_probs=69.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC------C----CCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------S----RYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID------p----~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
..+-|.+.|+.+..+++|.++|--- ... ..++....|-.+. + .+=|.+|+++||+.|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~-D~~-~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLS-DDQ-GFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEE-SST-CB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe-cCC-CCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 3778999999999999999998421 110 1111111111110 0 03478999999999999999999988
Q ss_pred -eecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003613 595 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIG 672 (807)
Q Consensus 595 -V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdLn~~np~Vr~~i~~~l~~Wi~e~G 672 (807)
++-|++.-... +..+... .|.. ...+ ...... .....||..+|++.+++.+++..+++-+.
T Consensus 94 d~PGH~~~~l~~----~p~~~~~-~~~~------~~~~------~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGCS-AWPE------DKSW------PNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EESSS-HHHHHH----HHHHCCC-HTTC------SSSC------EEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHh----Cchhhcc-cccc------cccc------ccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 56777653110 0000000 0000 0000 000000 00124788899999999998888886444
No 116
>PRK15447 putative protease; Provisional
Probab=62.49 E-value=21 Score=39.39 Aligned_cols=58 Identities=7% Similarity=0.199 Sum_probs=41.1
Q ss_pred eeeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 514 GFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 514 ~F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
-|+|. .|.+ +.-...|++.|+++||+.-..-+. + ..| +.+++++.|+.||++|.+|++
T Consensus 9 ~~~~p----~~~~---~~~~~~~~~~gaDaVY~g~~~~~~---R----------~~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 9 LYYWP----KETV---RDFYQRAADSPVDIVYLGETVCSK---R----------REL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred ccCCC----CCCH---HHHHHHHHcCCCCEEEECCccCCC---c----------cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 36775 4544 344567788999999998321111 1 012 779999999999999999998
No 117
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=62.44 E-value=71 Score=36.64 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=67.7
Q ss_pred HHHhHHHHHHcCCCEEEECCCCCC-CCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCcCC
Q 003613 529 LKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~PIfes-~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~ 607 (807)
..+-+.-+|+.|...|-|+-=.-- -.-+.=..++|..++... ..+-+++|++||+++|||+-+ -|...
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~----Y~S~~------ 151 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL----YHSLF------ 151 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE----EcCHH------
Confidence 345677889999999987643211 111111122444444433 568899999999999999988 22221
Q ss_pred CcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCccEEEEccc
Q 003613 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFV 681 (807)
Q Consensus 608 ~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i---~~~l~~Wi~e~GVDGfRlDaa 681 (807)
+|... .|... ... .......+...+++ ..-++.++..||-|.+=+|.+
T Consensus 152 ----------DW~~p-------~y~~~------~~~---~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 152 ----------DWFNP-------LYAGP------TSS---DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred ----------HhCCC-------ccccc------ccc---ccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 23211 11000 000 00111234456666 677788888999999999986
No 118
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=62.36 E-value=23 Score=39.64 Aligned_cols=122 Identities=14% Similarity=0.164 Sum_probs=70.7
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC------------CCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID------------p~lGt~edfk~LV~aaH~~GIkVILD 593 (807)
.+.|.+-+|.+...++|.++|--. ... .+++....|-.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 17 ~~~lk~~id~ma~~KlN~lhlHLt-D~~-~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 17 VAEVKRYIDLLALYKLNVLHLHLT-DDQ-GWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEee-cCC-cceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 678888899999999999998421 110 1222222221111 11228999999999999999999988
Q ss_pred E-eecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003613 594 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (807)
Q Consensus 594 ~-V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~ 669 (807)
+ ++-|+..-.. .+..... .. ...+.+. +.. .....||..+|++.+++.+++..+++
T Consensus 95 iD~PGH~~a~~~----~~p~l~~----~~----~~~~~~~-------~~~-~~~~~l~~~~~~t~~fl~~v~~E~~~ 151 (329)
T cd06568 95 IDMPGHTNAALA----AYPELNC----DG----KAKPLYT-------GIE-VGFSSLDVDKPTTYEFVDDVFRELAA 151 (329)
T ss_pred cCCcHHHHHHHH----hChhhcc----CC----CCCcccc-------ccC-CCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 7 3456543210 0000000 00 0000000 000 11235888999999999999888874
No 119
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=61.80 E-value=26 Score=37.37 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~ 652 (807)
..++..++++||++|+|||+=+- ++.. + .| . . -..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~-------------~---------------~~------------~---~-~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSP-------------P---------------EF------------T---A-ALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCC-------------C---------------cc------------h---h-hhc
Confidence 35788999999999999998431 1100 0 00 0 0 124
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEccccc-----hhHHHHHHHHHhc
Q 003613 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG-----FWGGYVKDYLEAT 696 (807)
Q Consensus 653 np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~-----f~~~~i~~~~~~~ 696 (807)
++..|+.+++.+..+++++|+||.-+|.=.- -...|+++++++.
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l 128 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAAL 128 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHH
Confidence 6788888888777778899999999997421 1234566666554
No 120
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.76 E-value=62 Score=36.47 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.||+|++++|++|-+++ +=++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 5789999999999999988 5678988753
No 121
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=60.19 E-value=30 Score=36.33 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCC-------CCCHHHHHHHHHHHHHcCcEEEE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR-------YGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~-------lGt~edfk~LV~aaH~~GIkVIL 592 (807)
-+.|.+-.+.|+++|+..|.|.|.+. +...-|..++.. -=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~------~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQ------YGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc------cchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 45666666788888999999998644 333333333221 23678999999999999999975
No 122
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=58.52 E-value=2.2e+02 Score=32.09 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC---HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
..++....+..=|+..|..-.+.-+....+| +. .+.+-+ .+.|++|++++|++|-++++ =++|.|...
T Consensus 34 ~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 34 RYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 4444555555567888876554433332221 11 122223 35899999999999999998 678887653
No 123
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=58.51 E-value=16 Score=42.16 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=35.8
Q ss_pred CCCCCCCCC-----CCHHHHHHHHHHHHHHHHhcCccEEEEcccc----chhHHHHHH
Q 003613 643 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR----GFWGGYVKD 691 (807)
Q Consensus 643 ~~~lpdLn~-----~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~----~f~~~~i~~ 691 (807)
|++..+|++ .+|.++++|.++.+...+ =.+|||+|..+ |+..-++.+
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHSTPlhVaeylLd~ 415 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHSTPLHVAEYLLDA 415 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCCcHHHHHHHHHH
Confidence 455666766 579999999999988874 68999999998 444444444
No 124
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.91 E-value=28 Score=37.30 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=35.9
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+-+.++++|||++|-++- |.-. =+.++..+||+.++++|++|+-.+
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~--------G~~~----------i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISD--------GSME----------ISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHcCCCEEEEcC--------CccC----------CCHHHHHHHHHHHHhCCCeEeccc
Confidence 3445699999999999983 2111 136789999999999999999653
No 125
>TIGR03356 BGL beta-galactosidase.
Probab=56.16 E-value=25 Score=40.71 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=44.2
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCC-CC-----CHHHHHHHHHHHHHcCcEEEEeEe
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR-YG-----NIDELKDVVNKFHDVGMKILGDVV 595 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~-lG-----t~edfk~LV~aaH~~GIkVILD~V 595 (807)
.+.-..+.++-|++||++++=++=-+ ..|-|. -| ..+-++++|++|+++||++|+++.
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~W-------------sri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAW-------------PRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccch-------------hhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 57788899999999999999876322 222222 12 346689999999999999999985
No 126
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=55.95 E-value=38 Score=31.80 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
-+.+..++..|++-|+++|+|+.-.....+++.-|. .+.++++|+++- |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-----------~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-----------IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-----------HHHHHHHHHHHh--CCCEee
Confidence 457888999999999999999987766554443222 455555555432 998874
No 127
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.80 E-value=26 Score=38.61 Aligned_cols=119 Identities=9% Similarity=0.113 Sum_probs=70.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC-----------CCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID-----------p~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+.|.+-++.+..+++|.++|-=- .. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.+
T Consensus 15 ~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 15 VESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEec
Confidence 678888899999999999987311 10 11222222221111 113378999999999999999999987
Q ss_pred -eecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003613 595 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (807)
Q Consensus 595 -V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~ 669 (807)
++.|+..--.. +..... +.+.+. .+ ......||..+|++.+++.+++..+++
T Consensus 93 D~PGH~~a~~~~----~p~l~~-------------~~~~~~-----~~-~~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 93 DMPGHSTAFVKS----FPKLLT-------------ECYAGL-----KL-RDVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred cchHHHHHHHHh----CHHhcc-------------CccccC-----CC-CCCCCccCCCCccHHHHHHHHHHHHHH
Confidence 45777542100 000000 000000 00 001125788899999999999888885
No 128
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=55.63 E-value=22 Score=46.60 Aligned_cols=69 Identities=20% Similarity=0.125 Sum_probs=54.9
Q ss_pred ceeeeeeeeccCCC-CC-CcHHHHHHhHHHHHHcCCCEEEECCCCCCC-CC----CCCCcccCCccCCCCCCHHHH
Q 003613 508 FEILCQGFNWESHK-SG-RWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDEL 576 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~-~G-Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~-s~----hGYd~~Dy~~IDp~lGt~edf 576 (807)
..|.+|-|.-.+.. -| |||..+.+-++.+++.|.+.|.|+|+.... .+ ..|.+.+-+.+||.|=+.+.+
T Consensus 725 ~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 725 CGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred eEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 56777777655432 24 899999999999999999999999998754 23 799999999999888776543
No 129
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=55.57 E-value=29 Score=39.07 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=70.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccC-------CCCCCHHHHHHHHHHHHHcCcEEEEeE-eec
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-------SRYGNIDELKDVVNKFHDVGMKILGDV-VLN 597 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~ID-------p~lGt~edfk~LV~aaH~~GIkVILD~-V~N 597 (807)
.+.|.+-++.+..+++|.++|- +... ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.+ ++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H-ltDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG 94 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH-ITDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG 94 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe-EEcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCch
Confidence 6788888999999999999873 0000 01222222221111 112289999999999999999999988 456
Q ss_pred ccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003613 598 HRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (807)
Q Consensus 598 Htg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~ 669 (807)
|+..-.... +... ......|.. + + .-...-.||..+|++.+++.+++..+++
T Consensus 95 H~~a~~~~~-p~l~-~~~~~~~~~---------~-------~--~~~~~~~L~~~~~~t~~fl~~vl~E~~~ 146 (348)
T cd06562 95 HTGSWGQGY-PELL-TGCYAVWRK---------Y-------C--PEPPCGQLNPTNPKTYDFLKTLFKEVSE 146 (348)
T ss_pred hhHHHHHhC-hhhh-CCCCccccc---------c-------c--cCCCCccccCCChhHHHHHHHHHHHHHH
Confidence 765421100 0000 000000000 0 0 0011224788899999999988887775
No 130
>PRK07094 biotin synthase; Provisional
Probab=53.85 E-value=26 Score=38.64 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=49.1
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.+.+..|++.|++.|.+.. ++.+ ..-|-.+.+ -.+.++..+.++.+|+.||.|..++++.+-+..
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl--Es~~-----~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH--ETAD-----KELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHHHHHHHcCCCEEEecc--ccCC-----HHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 5678899999999999653 2222 222333444 367899999999999999999999999986654
No 131
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=53.22 E-value=29 Score=37.27 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+.+-|.++++|||++|-++= |+-.. +.++..++|+.|.++|++|+-.+
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSd--------Gti~l----------~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISD--------GTIDL----------PEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecC--------CceeC----------CHHHHHHHHHHHHHCCCEEeecc
Confidence 455668899999999999872 22111 36789999999999999999865
No 132
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=52.86 E-value=29 Score=38.49 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=45.8
Q ss_pred HHhHHHHHHcCCC-EEEECCCCCCCCCCCCCcccC-CccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt-~I~L~PIfes~s~hGYd~~Dy-~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.++|..|+++|++ .|.|.+ ++.+ ..-. ..++-.+ +.+++.+.++.+|++||+|.+++.+..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-----d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G~ 179 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-----DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFKP 179 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-----HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 6788899999998 698763 2222 1112 1344444 889999999999999999999999874
No 133
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=52.82 E-value=1e+02 Score=35.03 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.|++|++++|++|-++++-+ +|.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL--~H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL--WHGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec--ccCCCCC
Confidence 4789999999999999998866 4888653
No 134
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=52.41 E-value=3.2e+02 Score=31.25 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.+.|+++++++|++|-++++- ++|.|..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQ--L~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQ--LWHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEE--eccCccc
Confidence 568999999999999999985 5899865
No 135
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=51.95 E-value=39 Score=37.06 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCC-----CCCCCc--------ccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVS-----PEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s-----~hGYd~--------~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
......-|+.+++-|||.|.++=+-+..+ ..++.+ .|+..++|.| -+.+.++|+.|.++||.+
T Consensus 29 ~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~-- 104 (289)
T PF13204_consen 29 REEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA-- 104 (289)
T ss_dssp HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--
Confidence 45566678999999999999965543221 123333 2444444333 467889999999999988
Q ss_pred eEeecc
Q 003613 593 DVVLNH 598 (807)
Q Consensus 593 D~V~NH 598 (807)
++|+=|
T Consensus 105 ~lv~~w 110 (289)
T PF13204_consen 105 ALVPFW 110 (289)
T ss_dssp EEESS-
T ss_pred EEEEEE
Confidence 467666
No 136
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.89 E-value=1.4e+02 Score=34.04 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.|++|++++|++|=++++-+ +|.|...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 4689999999999999988865 8887653
No 137
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=51.82 E-value=2.3e+02 Score=31.43 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=71.3
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHH-HHHHHHHHH-HcCcEEEEeEeecccccccCc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVVNKFH-DVGMKILGDVVLNHRCAHYQN 605 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~ed-fk~LV~aaH-~~GIkVILD~V~NHtg~d~~~ 605 (807)
.+-.-++.|++||+++|||-+.-...++.-.+.. |=.+.++==.+| |-+.+=+++ +.|++|+.=+.. .+-+.+
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp- 92 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP- 92 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC-
Confidence 4555678899999999999987765544333322 223344444444 444452444 889999875433 111110
Q ss_pred CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 606 ~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
+...+.... .. .........|.--+|++|+.|.++-.-+.....+||.-+
T Consensus 93 ---------~~~~~~~~~-------~~-------~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 ---------KVKRADEVR-------TD-------RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred ---------Ccchhhhcc-------cc-------CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 000010000 00 001112235666789999999999999885569999988
No 138
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=51.81 E-value=29 Score=39.04 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=49.1
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|..= ..+..-+..+ -+-.+.++..+.++.+++.|+. |-+|+++...+..
T Consensus 100 ~e~l~~l~~~Gv~risiGvq-------S~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 165 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQ-------SFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQT 165 (360)
T ss_pred HHHHHHHHHcCCCEEEEecc-------cCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence 47899999999999998742 1122222333 4567899999999999999996 7899999877654
No 139
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.28 E-value=1.3e+02 Score=34.25 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccc-ccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHR-CAH 602 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHt-g~d 602 (807)
.+.||+|++++|++|-++++-+ +|. |..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999654 686 554
No 140
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=50.61 E-value=37 Score=40.10 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCc-EEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GI-kVILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|.|=.-+ ..-+..+ -+-.+.+++.+.++.|++.|+ .|-+|+++.--+..
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~-------d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt 334 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMN-------DETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEG 334 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCC-------HHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCC
Confidence 57899999999999999863211 1112233 344689999999999999999 78899999876654
No 141
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.82 E-value=71 Score=35.19 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.+|++++++|+.|-++++- ++|.|...
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~~ 104 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQ--LAHAGRQA 104 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHH--hhCCCcCC
Confidence 468999999999999998764 58888764
No 142
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=49.72 E-value=16 Score=43.25 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=33.2
Q ss_pred CcH-HHHHHhHHHHHHcCCCEEEECCCCCCCC--CCCCCcccCCccCCCCCCHHHH
Q 003613 524 RWY-MELKEKATELSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSSRYGNIDEL 576 (807)
Q Consensus 524 Gdl-~GI~ekLdYLk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp~lGt~edf 576 (807)
||| ..+.+-++.+++.|+..+.|.|++.... .+.|.+.+-+.+||.|=+.+.+
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l 70 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEAL 70 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHH
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHh
Confidence 789 8999999999999999999999997653 3489999999999988765543
No 143
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=49.56 E-value=2.6e+02 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.|++|++++|++|-++++ =++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 46899999999999999998 567998764
No 144
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.95 E-value=42 Score=37.89 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHhHHHHHHcCCCEEEECC-----------CCC----CCCCCCCCcc----cCCccCC--CCCCHHHHHHHHHHHH
Q 003613 526 YMELKEKATELSSLGFSVIWLPP-----------PTE----SVSPEGYMPR----DLYNLSS--RYGNIDELKDVVNKFH 584 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~P-----------Ife----s~s~hGYd~~----Dy~~IDp--~lGt~edfk~LV~aaH 584 (807)
.+.|.+.+|.+..+++|.++|-- -++ ..+..++... ......+ .+=|.+|+++||+-|.
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 66888889999999999999831 111 1111111110 0011111 1227899999999999
Q ss_pred HcCcEEEEeE-eeccccc
Q 003613 585 DVGMKILGDV-VLNHRCA 601 (807)
Q Consensus 585 ~~GIkVILD~-V~NHtg~ 601 (807)
++||.||-.+ ++.|+..
T Consensus 97 ~rgI~VIPEID~PGH~~a 114 (357)
T cd06563 97 ERGITVIPEIDMPGHALA 114 (357)
T ss_pred HcCCEEEEecCCchhHHH
Confidence 9999999887 4566643
No 145
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=48.56 E-value=46 Score=36.00 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.+.+..|+++|++.|.+. ++ .+..- |..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~~~~-----~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TSQEF-----YSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CCHHH-----HhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 577899999999999997 33 22112 2234333 5889999999999999999999988876
No 146
>PLN03059 beta-galactosidase; Provisional
Probab=48.17 E-value=36 Score=42.58 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD 593 (807)
.+.|.-+|++|+|+|-.=-++....... ...| |.+..||.++++.|++.||.|||=
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~d-------F~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYY-------FEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCC-Ceee-------ccchHHHHHHHHHHHHcCCEEEec
Confidence 5677788999999998543332211110 1112 345789999999999999999994
No 147
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=47.90 E-value=23 Score=36.38 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=50.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCC---CCCCcccCCccCCCCC--------CHHHHHHHHHHHHHcCcEEEEe
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~---hGYd~~Dy~~IDp~lG--------t~edfk~LV~aaH~~GIkVILD 593 (807)
+...+.+.+..|+++||. |+|-=+-...++ -..-+.||-+||..+- ...-++.+++.||..|++||++
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 344566889999999997 555432211111 1223467888886543 2346999999999999999999
Q ss_pred Eeeccc
Q 003613 594 VVLNHR 599 (807)
Q Consensus 594 ~V~NHt 599 (807)
.|=+..
T Consensus 210 gVe~~~ 215 (241)
T smart00052 210 GVETPE 215 (241)
T ss_pred cCCCHH
Confidence 887654
No 148
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=47.85 E-value=31 Score=39.61 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PI---fes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
.+.++.+...|..||.+||++|-+--. .|......|+ ...+++|.+.+++.|+||..=+-|..+
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd-------------Ws~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD-------------WSGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC-------------cHHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 456779999999999999999987532 2444444554 346788999999999999998888888
Q ss_pred ccc
Q 003613 600 CAH 602 (807)
Q Consensus 600 g~d 602 (807)
|.+
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 149
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=46.86 E-value=37 Score=38.41 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|..= +.+ ..-...+ .+-.+.++..+.++.+++.|+. |.+|++++.-+..
T Consensus 108 ~e~l~~l~~~G~~rvslGvQ--S~~-----~~~L~~l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQ--SAA-----PHVLAVL-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEEecc--cCC-----HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCC
Confidence 47889999999999998731 111 1111122 3445788999999999999999 9999999887654
No 150
>PLN02801 beta-amylase
Probab=46.37 E-value=63 Score=38.17 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=51.3
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECC---CCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+++...|..||.+||++|-+-- |.|..+...|+- ...++|++.+++.|+||..=+-|..+|.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW-------------SAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 456899999999999999998754 234444555554 4578899999999999999888888776
Q ss_pred c
Q 003613 602 H 602 (807)
Q Consensus 602 d 602 (807)
+
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 5
No 151
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=46.32 E-value=64 Score=32.35 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=41.9
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.||.-..+..+-|+++||.+-- .|=+.--|++.+.+.++.|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 5788999999999999997643 122333489999999999999999999843
No 152
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.18 E-value=2.2e+02 Score=31.79 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.||+|++++|++|-++++- ++|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Q--l~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQ--LNHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEE--ccCCCcCC
Confidence 468999999999999999875 47887653
No 153
>PRK06256 biotin synthase; Validated
Probab=45.79 E-value=34 Score=37.96 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.+.+..|++.|++.|.++ +++ +. .-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~--lEt-s~-----~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN--LET-SR-----SYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecC--Ccc-CH-----HHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 467889999999999885 343 22 223345543 4789999999999999999999999977
No 154
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=45.73 E-value=40 Score=39.04 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=46.8
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEE-EeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVI-LD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|.- ++.+ ......++-.. +.++..+.++.+++.|+.+| +|+.++.-+..
T Consensus 141 ~e~l~~l~~~G~~rvslGv--QS~~-----~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV--QSFH-----DSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred HHHHHHHHHcCCCEEEEec--ccCC-----HHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 4789999999999999863 1111 11122233222 77899999999999999865 99999877654
No 155
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=45.01 E-value=36 Score=45.87 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=52.5
Q ss_pred ceeeeeeeeccCCCC-C-CcHHHHHHhHHHHHHcCCCEEEECCCC---CC--CCCCCCCcccCCccCCCCCCHHHH
Q 003613 508 FEILCQGFNWESHKS-G-RWYMELKEKATELSSLGFSVIWLPPPT---ES--VSPEGYMPRDLYNLSSRYGNIDEL 576 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~~-G-Gdl~GI~ekLdYLk~LGvt~I~L~PIf---es--~s~hGYd~~Dy~~IDp~lGt~edf 576 (807)
..+.+|-|.-.+..+ | |||..+.+-++.+++.|.+.|.|+|+. .. ..++.|.+.+-+.+||.|=+.+.+
T Consensus 173 wG~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alNPlYIdle~l 248 (1693)
T PRK14507 173 WGLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLNTLYIDVEAV 248 (1693)
T ss_pred eEEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccChHhcCHhhc
Confidence 345666665444433 4 899899999999999999999999998 22 246899999999999887765443
No 156
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=43.96 E-value=32 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.3
Q ss_pred HHHHHHHHcCcEEEEeEeec
Q 003613 578 DVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 578 ~LV~aaH~~GIkVILD~V~N 597 (807)
..+++||++|++|+.=+.+.
T Consensus 50 ~~idaAHknGV~Vlgti~~e 69 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFE 69 (339)
T ss_pred HHHHHHHhcCCeEEEEEEec
Confidence 38899999999999865443
No 157
>PLN02803 beta-amylase
Probab=43.83 E-value=69 Score=38.05 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=50.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEECC---CCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 526 YMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
-+.|...|..||.+||++|-+-- |.|..+...|+- .-+++|++.+++.|+||..=+-|..+|.+
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW-------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 37899999999999999998753 234444555554 45688999999999999998888888775
No 158
>PLN02905 beta-amylase
Probab=43.31 E-value=77 Score=38.39 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=51.5
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PI---fes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+.+.|...|..||.+||++|-+--. .|..+...|+- ..+++|++.+++.|+||..=+-|..+|.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW-------------sgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW-------------NGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 5679999999999999999987542 34444455554 4568899999999999999888888877
Q ss_pred c
Q 003613 602 H 602 (807)
Q Consensus 602 d 602 (807)
+
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 5
No 159
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=42.99 E-value=50 Score=40.99 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.+++++.+.|+++||.||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478889999999999999999875
No 160
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.62 E-value=53 Score=35.06 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCC-CCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~h-GYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
.+.+.++.++++|+++|.|.+.. .| .+.+.++ +.++++++.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~----~~~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE----SDERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC----cccccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 56788999999999999996431 11 0111111 457789999999999999874
No 161
>PLN02950 4-alpha-glucanotransferase
Probab=42.41 E-value=54 Score=41.77 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 574 DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 574 edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.+++++.+.|+++||+||.|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 368889999999999999999874
No 162
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=41.92 E-value=24 Score=38.75 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeEe
Q 003613 572 NIDELKDVVNKFHDVGMKILGDVV 595 (807)
Q Consensus 572 t~edfk~LV~aaH~~GIkVILD~V 595 (807)
+.++++++.+-||++||+|.||+-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 478999999999999999999984
No 163
>PRK15452 putative protease; Provisional
Probab=41.79 E-value=65 Score=37.69 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=36.5
Q ss_pred HhHHHHHHcCCCEEEECCC-CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 531 EKATELSSLGFSVIWLPPP-TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 531 ekLdYLk~LGvt~I~L~PI-fes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
++|...-+.|.++||+..- |.... ...+| +.++|++.|+.||++|++|++ .+|..
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv--t~n~i 69 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV--VVNIA 69 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE--EecCc
Confidence 4455555789999999532 21111 11122 568999999999999999987 44443
No 164
>PRK13561 putative diguanylate cyclase; Provisional
Probab=41.77 E-value=40 Score=40.80 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=52.4
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCC------CCCcccCCccCCCC-----CCHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~h------GYd~~Dy~~IDp~l-----Gt~edfk~LV~aaH~~GIkVIL 592 (807)
.+...+.+.+..|+++||.... -=.-.+.++- ..-+.||-+||..| .+..-++.+++.||..||+||.
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viA 609 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIA 609 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 4577889999999999997654 1111111111 12467888888543 3456799999999999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
.+|=+.-
T Consensus 610 egVE~~~ 616 (651)
T PRK13561 610 EGVETEA 616 (651)
T ss_pred ecCCCHH
Confidence 9886543
No 165
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=41.60 E-value=9.8 Score=34.99 Aligned_cols=101 Identities=8% Similarity=-0.022 Sum_probs=57.2
Q ss_pred cccccccCccccCCCcceeEEEe---cCccceeEEEEEcCCccccccCCcceEEeCCCCCCCCCcccccccccCCCcccc
Q 003613 345 NKALRTLLQPKEGGKGCSRLFTV---DEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEAT 421 (807)
Q Consensus 345 ~~a~eTpf~~~~~~~~~~~~~~l---~~~~~g~~FVl~~~~~~W~k~~g~df~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (807)
+..++ ||++ ..+.|.| .+....+.+++..+ + | .+.. ..++|...+.+ +....|.+ ++...
T Consensus 7 ~~~~~-p~ga------~~v~irlr~~~~~v~~v~l~~~~~-~-~--~~~~-~~~~M~~~~~~---~~~~~~~~--~i~~~ 69 (116)
T cd02857 7 SEYAY-PYGA------DTLHIRLRTKKGDVAKVYLRYGDP-Y-D--KGEE-EEVPMRKDGSD---ELFDYWEA--TLPPP 69 (116)
T ss_pred CceeE-EcCC------CEEEEEEEecCCCccEEEEEEECC-C-C--CCCc-eEEEEEEeeeC---CceeEEEE--EEecC
Confidence 44566 8888 2466666 44566777666655 2 1 1122 37789776654 33345655 55543
Q ss_pred cccccchhhHHHHHH--Hhhcc-cccccchhhcccchhhhhhhhHHh
Q 003613 422 QEVSQTAYTAGIIKE--IRNLV-SDFSSDISRKTKSKEAQKSILLEI 465 (807)
Q Consensus 422 ~~~~~~~y~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~q~tv~~~~ 465 (807)
. +..+|+|.++.+ .+.+. .|..++.. ......||+|++++.
T Consensus 70 -~-~~~~Y~F~l~~~~~~~~y~~~G~~~~~~-~~~~~~Fq~t~~~~~ 113 (116)
T cd02857 70 -T-GRLRYYFELVDDGETVWYGEEGFSDEPP-DTDANYFQFPYIHPA 113 (116)
T ss_pred -C-cEEEEEEEEEcCCEEEEEeCCccccccc-cccCCceeeCccCHH
Confidence 3 899999999742 21111 12222111 124577899998875
No 166
>PRK09936 hypothetical protein; Provisional
Probab=41.43 E-value=57 Score=35.95 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCH-HHHHHHHHHHHHcCcEEEEeEeec
Q 003613 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNI-DELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~-edfk~LV~aaH~~GIkVILD~V~N 597 (807)
=.+.+..++.+||++|.+- ..+| -|+.||+. .-|.+++++|++.||+|++=+-++
T Consensus 40 Wq~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 40 WQGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 3556788999999999975 1233 23366665 468999999999999999966544
No 167
>PRK05660 HemN family oxidoreductase; Provisional
Probab=41.21 E-value=55 Score=37.20 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEE-EEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkV-ILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|.. ...+..-+..+. +..+.++..+.++.|++.|++. -+|+.+...+..
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3899999999999999873 222222233333 4468899999999999999975 599999877654
No 168
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.69 E-value=77 Score=29.48 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=40.7
Q ss_pred HHHHHcCCCEEEECCCCCCCC-CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 534 TELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 534 dYLk~LGvt~I~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
..+..+|+..+.+.+...... .......|..-+=+.=|...+..++++.||++|++||+
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 455778999998866421111 12223344444446778899999999999999999987
No 169
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.55 E-value=3.2e+02 Score=30.74 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
..++.......=|+..|..-...-.....++ +.. ..+... .-.+.|++|++++|++|-++++-+ +|.|..
T Consensus 38 ~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~-~~~-~~~~~d-~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 38 FHLIHYGTRAAGQVGLVIVEATAVLPEGRIS-DKD-LGIWDD-EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHcCCCeEEEECCeEECccccCC-CCc-eecCCH-HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 4444455555568888877655433332211 110 011100 124689999999999999998754 787764
No 170
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=40.46 E-value=51 Score=38.42 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=49.3
Q ss_pred HHHHHhHHHHHHcCCCEEEECCCCCCCCCCC-CCc--------------------ccCCccCCCCCCHHHHHHHHHHHHH
Q 003613 527 MELKEKATELSSLGFSVIWLPPPTESVSPEG-YMP--------------------RDLYNLSSRYGNIDELKDVVNKFHD 585 (807)
Q Consensus 527 ~GI~ekLdYLk~LGvt~I~L~PIfes~s~hG-Yd~--------------------~Dy~~IDp~lGt~edfk~LV~aaH~ 585 (807)
.||+.-|.-+..||+.+.=+.-..-+....+ |.+ .+.-++ ..+++.+.+..+++.+++
T Consensus 17 aGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~-G~l~~~e~~~~i~~~~k~ 95 (448)
T PRK08573 17 AGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKT-GMLSNREIIEAVAKTVSK 95 (448)
T ss_pred HHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEE-CCcCCHHHHHHHHHHHHH
Confidence 6999999999999998776544332222111 100 011111 346788999999999999
Q ss_pred cCcEEEEeEeeccc
Q 003613 586 VGMKILGDVVLNHR 599 (807)
Q Consensus 586 ~GIkVILD~V~NHt 599 (807)
+|++|++|-|+-..
T Consensus 96 ~g~~vv~DPv~~~~ 109 (448)
T PRK08573 96 YGFPLVVDPVMIAK 109 (448)
T ss_pred cCCCEEEcCccccC
Confidence 99999999887643
No 171
>PLN00197 beta-amylase; Provisional
Probab=39.99 E-value=87 Score=37.38 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=51.1
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECC---CCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.+...|..||.+||++|-+-- |.|..+...|+- ..+++|++.+++.|+||..=+-|..+|.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW-------------sgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW-------------GGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 456899999999999999998753 234444555554 4568899999999999999888888776
Q ss_pred c
Q 003613 602 H 602 (807)
Q Consensus 602 d 602 (807)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 5
No 172
>PLN02705 beta-amylase
Probab=39.86 E-value=86 Score=37.85 Aligned_cols=65 Identities=11% Similarity=0.148 Sum_probs=51.0
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCC---CCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPP---TESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PI---fes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+-+.|...|..||.+||++|-+--. .|..+...|+- ..+++|++.+++.|+||..=+-|..+|.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW-------------SGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 4579999999999999999987542 34444455554 4568899999999999999888887776
Q ss_pred c
Q 003613 602 H 602 (807)
Q Consensus 602 d 602 (807)
+
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 5
No 173
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.81 E-value=63 Score=37.69 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=48.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.+.|..|+++||+.|.|.. ++ .+..-...+ -+-.+.++..+.++.+++.|+. |-+|+.+..-+..
T Consensus 152 ~e~l~~L~~~G~~rvsiGv--QS-----~~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt 217 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV--QD-----FDPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQT 217 (453)
T ss_pred HHHHHHHHHcCCCEEEECC--CC-----CCHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCC
Confidence 5889999999999999874 11 222222233 3347889999999999999997 8899999877654
No 174
>PLN02161 beta-amylase
Probab=38.57 E-value=1e+02 Score=36.57 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=50.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECC---CCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
+.+.+...|..||.+||++|-+-- |.|..+...|+- .-+++|++.+++.|+||..=+-|..+|.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW-------------SLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999998754 234445555554 4568899999999999999888887665
Q ss_pred c
Q 003613 602 H 602 (807)
Q Consensus 602 d 602 (807)
+
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 4
No 175
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=38.50 E-value=64 Score=36.46 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=47.8
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++|++.|.+.. ++.+ ..-...+ -+-.+.++..+.++.+++.|+. |-+|++++.-+..
T Consensus 103 ~e~l~~lk~~G~nrisiGv--QS~~-----d~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV--QSMN-----NNILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEec--ccCC-----HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCC
Confidence 5889999999999999762 2221 1111122 2346788999999999999997 9999999887654
No 176
>PLN02411 12-oxophytodienoate reductase
Probab=38.00 E-value=3.7e+02 Score=30.90 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.+++|++++|++|-++++-+ +|.|...
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL--~H~Gr~~ 114 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQL--WHVGRAS 114 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCC
Confidence 3679999999999999998754 6888754
No 177
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=37.48 E-value=4.7e+02 Score=29.14 Aligned_cols=69 Identities=19% Similarity=0.044 Sum_probs=40.0
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCC--CCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
..++.....++=|+..|..-...-.+...+ +.+. +... .-.+.|++|++++|++|-++++- ++|.|...
T Consensus 34 ~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~----~~~d-~~~~~~~~l~~~vh~~G~~~~~Q--L~H~G~~~ 104 (336)
T cd02932 34 WHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLG----LWND-EQIEALKRIVDFIHSQGAKIGIQ--LAHAGRKA 104 (336)
T ss_pred HHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCcee----ecCH-HHHHHHHHHHHHHHhcCCcEEEE--ccCCCcCC
Confidence 333333444445788886655443332211 1111 1100 12468999999999999999875 46887653
No 178
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=37.46 E-value=69 Score=37.36 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=47.5
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.+.|..|+++|++.|.|.. ++. +..-+..++ +-.+.++..+.++.+++.|++ |-+|+.++..+..
T Consensus 151 ~e~l~~lk~~G~~risiGv--qS~-----~~~~l~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV--QDF-----NKEVQQAVN-RIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCC-----CHHHHHHhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCC
Confidence 5789999999999999873 111 111112232 336788999999999999996 7799998877654
No 179
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=37.39 E-value=1.6e+02 Score=31.80 Aligned_cols=45 Identities=16% Similarity=-0.045 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEccccc----hhHHHHHHHHHhcC
Q 003613 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG----FWGGYVKDYLEATE 697 (807)
Q Consensus 653 np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~~----f~~~~i~~~~~~~~ 697 (807)
+++-++.+.+.+..+++++|+||+-+|-=.. -...++++++++..
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~ 141 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFG 141 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhC
Confidence 3445555566666677799999999987531 23355666666543
No 180
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.51 E-value=80 Score=36.92 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.+.|..+++.|++.|.+. .|+.+.. -+..++-. -+.++..+.++.+|+.||.|.+++++..-+..
T Consensus 287 ~e~l~~l~~aG~~~v~iG--iES~s~~-----~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget 351 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVG--YESGDQQ-----ILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILGLPGET 351 (472)
T ss_pred HHHHHHHHHcCCCEEEEc--CCCCCHH-----HHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCC
Confidence 567899999999999976 3443311 11122222 26788999999999999999999998765543
No 181
>PRK01060 endonuclease IV; Provisional
Probab=36.35 E-value=69 Score=34.25 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkV 590 (807)
++.+-|+.++++|+++|.|.+-- .+.+. +..-+.+++++|.+.+.++||++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~----p~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGN----PQQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCC----CCCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 47888999999999999986421 11111 21237888999999999999995
No 182
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=35.92 E-value=84 Score=35.32 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=47.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++||+.|-|.. ...+..-...+ -+-.+.++..+.++.+++.|+. |-+|++++-.+..
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt 163 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDN 163 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCC
Confidence 5889999999999999763 11122212223 3445788999999999999996 6699999876643
No 183
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=35.53 E-value=59 Score=35.68 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcccc------chhHHHHHHHHHhc
Q 003613 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR------GFWGGYVKDYLEAT 696 (807)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~------~f~~~~i~~~~~~~ 696 (807)
.++..|+.+++.+..+++++|+||+-+|.-. .-...|+++++.+.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l 133 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRL 133 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 3577888888888778889999999999753 11233555555543
No 184
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.43 E-value=84 Score=36.67 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=48.4
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCc-EEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GI-kVILD~V~NHtg~d 602 (807)
.++|..|+++|++.|.|.. ++. +..-...++ +..+.++..+.++.+++.|+ .|-+|+.++.-+..
T Consensus 151 ~e~l~~l~~aG~~risiGv--qS~-----~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV--QDF-----DPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC--CCC-----CHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 5789999999999999873 222 111122222 34688899999999999999 89999999877754
No 185
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=35.02 E-value=72 Score=36.52 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=59.3
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCC----CCCCCcccCCccCCC-----------------------------
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVS----PEGYMPRDLYNLSSR----------------------------- 569 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s----~hGYd~~Dy~~IDp~----------------------------- 569 (807)
+|--++|.=.++-|+.-|-|.+.--|=|.... +++--+. ||++-|.
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NP 211 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNP 211 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCC
Confidence 57778999999999999999998888775431 3333333 2222111
Q ss_pred CC---CHHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 570 YG---NIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 570 lG---t~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
-| +.+-|+++++-||+.||-||.|=|+.|+.-.+
T Consensus 212 cGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 212 CGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred CcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 12 56889999999999999999999999997553
No 186
>PRK10060 RNase II stability modulator; Provisional
Probab=34.67 E-value=43 Score=40.95 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=52.0
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCCCcccCCccCCCC--------CCHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGYd~~Dy~~IDp~l--------Gt~edfk~LV~aaH~~GIkVIL 592 (807)
.+...+.+.+..|+++||.... -=.-...+ +-..-+.|+-+||..| ....-++.++..||+.||+||.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA 616 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA 616 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE
Confidence 4567889999999999997543 21111111 1122367888888544 3346789999999999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
++|=+.-
T Consensus 617 eGVEt~~ 623 (663)
T PRK10060 617 EGVETAK 623 (663)
T ss_pred ecCCCHH
Confidence 9886543
No 187
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=33.82 E-value=7.2e+02 Score=27.89 Aligned_cols=71 Identities=17% Similarity=0.028 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
..++.....++=|+.-|..-..+-.....+| +.. ..+... .-.+.||+|++++|+.|-++++-+ +|.|...
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~-~~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~ 104 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGG-PVLNSP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRYA 104 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCC-cccCCH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCCC
Confidence 3344444444457777776544333322222 111 111110 235689999999999999998865 6887653
No 188
>PLN02389 biotin synthase
Probab=33.53 E-value=1e+02 Score=35.29 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=46.4
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
.+.+..|++.|++.+.++ ++. + +.-|..+-+. .+.++..+.++.||+.||+|..=+++.| +.
T Consensus 178 ~E~l~~LkeAGld~~~~~--LeT-s-----~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl-gE 239 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHN--LDT-S-----REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL-GE 239 (379)
T ss_pred HHHHHHHHHcCCCEEEee--ecC-C-----hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC-CC
Confidence 578899999999998762 332 1 2223444432 3889999999999999999999999998 54
No 189
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.27 E-value=77 Score=30.73 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
.+.++.|+++|+..|+++- ++. +...+..+....++.++..+.++.++++|+.|.+.+++..-..
T Consensus 88 ~~~~~~l~~~g~~~i~i~l--e~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~ 152 (204)
T cd01335 88 EELLKELKELGLDGVGVSL--DSG-----DEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDE 152 (204)
T ss_pred HHHHHHHHhCCCceEEEEc--ccC-----CHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCC
Confidence 5677888888999999873 222 2222333334566789999999999999999999999876654
No 190
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=32.81 E-value=1.1e+02 Score=31.98 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkV 590 (807)
-+...+..|++||++.|=+.|+- | +-..+||+.+.++|-++||.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~------G------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG------G------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T------T------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCcee
Confidence 35567889999999999988762 1 235789999999999999987
No 191
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=32.74 E-value=67 Score=38.88 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=52.9
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCC---CcccCCccCCCC-----CCHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGY---MPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGY---d~~Dy~~IDp~l-----Gt~edfk~LV~aaH~~GIkVIL 592 (807)
.++..+.+.+..|+++||. |.|-=+-...+ +-.. -+.||-+||..| ++..-++.++..||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~-ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLL-IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCE-EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 4577888999999999998 45433322222 1233 567888888543 3455678888899999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
.+|=+..
T Consensus 615 egVEt~~ 621 (660)
T PRK11829 615 EGVETEE 621 (660)
T ss_pred ecCCCHH
Confidence 9886644
No 192
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.69 E-value=4.7e+02 Score=32.72 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHc-CcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDV-GMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~-GIkVILD~V~NHtg~d~ 603 (807)
.+.+|++++++|++ |-+|++-+ +|.|...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 46899999999999 68888765 8988754
No 193
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.23 E-value=1.1e+02 Score=28.40 Aligned_cols=60 Identities=15% Similarity=0.033 Sum_probs=39.0
Q ss_pred hHHHHHHcC-CCEEEECCCCCCC-CCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 532 KATELSSLG-FSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 532 kLdYLk~LG-vt~I~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
--.+|..+| +.+....+ .+.. ....-...|..-+=+.-|...+..++++.|+++|++||.
T Consensus 17 ~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 17 AKYLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 334667776 77776652 1111 111123444444446778889999999999999999986
No 194
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.06 E-value=89 Score=37.96 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+.|..+|++|+++|.-- +|-+ .|-=.+.-| .|.+.-||..+|++||+.|+.|+|=+
T Consensus 52 ~~~i~k~k~~Gln~IqtY-VfWn--~Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRi 108 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTY-VFWN--LHEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRI 108 (649)
T ss_pred HHHHHHHHhcCCceeeee-eecc--cccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecC
Confidence 345677899999999854 3332 121111111 46788899999999999999999954
No 195
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=31.87 E-value=3.1e+02 Score=30.61 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccccCc
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~ 605 (807)
.+.-.+.+..+++.|.|+=.-.|= ...+|+-.-.+.|--+ ..++|++|+++|++.||+.+.=+-+ |
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAPK--dDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V~Fv~aisP---g----- 79 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAPK--DDPYHRSKWREPYPEE----ELAELKELADAAKANGVDFVYAISP---G----- 79 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--T--T-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-EEEEEEBG---T-----
T ss_pred HHHHHHHHHHHHHcCCceEEECCC--CChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCCEEEEEECc---c-----
Confidence 566677788899999997665541 1223332222222211 3579999999999999998873310 0
Q ss_pred CCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEE
Q 003613 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (807)
Q Consensus 606 ~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~np~Vr~~i~~~l~~Wi~e~GVDGfRl 678 (807)
-++++++++-.+.|+.=+..+. ++||+-|-+
T Consensus 80 -----------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~lGvr~Fai 110 (306)
T PF07555_consen 80 -----------------------------------------LDICYSSEEDFEALKAKFDQLY-DLGVRSFAI 110 (306)
T ss_dssp -----------------------------------------TT--TSHHHHHHHHHHHHHHHH-CTT--EEEE
T ss_pred -----------------------------------------cccccCcHHHHHHHHHHHHHHH-hcCCCEEEE
Confidence 0122335666777777777777 899997765
No 196
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.86 E-value=93 Score=35.20 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=48.0
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.+.|..|+++|++.|.+.. ++. +..-+..+ .+-.+.++..+.++.+++.|+. |-+|+.+..-+..
T Consensus 100 ~e~l~~l~~~G~~rvsiGv--qS~-----~~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt 165 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV--QTF-----NDELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQT 165 (377)
T ss_pred HHHHHHHHHcCCCEEEEec--ccC-----CHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCC
Confidence 4789999999999999874 222 12212222 2446788999999999999998 6799999887664
No 197
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=31.46 E-value=76 Score=37.93 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=47.4
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.++|+.|+++|++.|.|..= +.+ +-. ...+ -+--+.++..+.++.+++.|++|.+|+.++--+..
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ--S~~----d~V-L~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt 270 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ--TIY----NDI-LERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSS 270 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc--cCC----HHH-HHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCC
Confidence 57899999999999998742 111 111 1122 23346788899999999999999999999976654
No 198
>PRK05939 hypothetical protein; Provisional
Probab=31.09 E-value=79 Score=36.21 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHcCCCEEEECCCC-C---CCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 535 ELSSLGFSVIWLPPPT-E---SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 535 YLk~LGvt~I~L~PIf-e---s~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
.++.+|+..+++.+.- + ..-..+-...=.-.+....|...+++++++.||++|+.||+|.++
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3566788887776531 0 000011011111122345788899999999999999999999875
No 199
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.77 E-value=1.3e+02 Score=31.99 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
-+.+.|+.++++||++|-|.. ...|.|. +. .+..++++|.+++.++||+|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~----~~~~~~~--------~~-~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWG----GRPHAFA--------PD-LKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEcc----CCccccc--------cc-cCchHHHHHHHHHHHcCCeEEE
Confidence 478899999999999999842 1112221 11 1345788899999999999853
No 200
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.53 E-value=1e+02 Score=35.43 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=47.5
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|..= +. +..-...+ -+--+.++..+.++.+++.|+. |-+|+.++.-+..
T Consensus 115 ~e~l~~l~~~GvnrislGvQ--S~-----~d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQ--AF-----QDELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcc--cC-----CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 47899999999999998741 11 11111222 3345788899999999999999 8899999977654
No 201
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=30.27 E-value=2.1e+02 Score=31.94 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=38.6
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.++.-+.+-.--|+++|||+|-|+=+.-.. ..+-+. -.+.+++|.+.....||||.|-+
T Consensus 54 ~~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~--~l~~v~~lAdvfRpYGIkv~LSv 112 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPE--YLDKVARLADVFRPYGIKVYLSV 112 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTT--THHHHHHHHHHHHHTT-EEEEEE
T ss_pred cchhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHH--HHHHHHHHHHHHhhcCCEEEEEe
Confidence 456778888888999999999998765433 122222 36789999999999999999965
No 202
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.19 E-value=1.5e+02 Score=29.50 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=39.9
Q ss_pred HHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 534 dYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
..|..+|+++.++..... ..-...|..-+=+.-|...+..++++.||++|++||+
T Consensus 50 ~~l~~~g~~~~~~~~~~~----~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTT----PSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCccc----CCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 357789999999865431 1122334333446678899999999999999999987
No 203
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=29.94 E-value=81 Score=33.81 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=46.8
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCCCcccCCccCCCCC--------CHHHHHHHHHHHHHcCcEEEEe
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGYd~~Dy~~IDp~lG--------t~edfk~LV~aaH~~GIkVILD 593 (807)
+...+...+..|+++||.. .|-=.-...+ +-.--+.|+-+||..|- ...-++.+|+-||+.||+||..
T Consensus 134 ~~~~~~~~l~~L~~~G~~i-alDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 134 DLDTALALLRQLRELGVRI-ALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred CHHHHHHHHHHHHHCCCeE-EEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 4556777888999999653 3321111111 11123556777775542 2356999999999999999998
Q ss_pred Eeec
Q 003613 594 VVLN 597 (807)
Q Consensus 594 ~V~N 597 (807)
+|=+
T Consensus 213 GVEt 216 (256)
T COG2200 213 GVET 216 (256)
T ss_pred ecCC
Confidence 8754
No 204
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=29.86 E-value=82 Score=31.15 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=38.7
Q ss_pred HhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeec
Q 003613 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 531 ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~N 597 (807)
...--|+.||..+..+. .|+..++...-..+.+.++++.|++.|++|++|...-
T Consensus 41 n~a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 41 NVAVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 34445778899888777 4455554432224788999999999999999999643
No 205
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=29.76 E-value=2.3e+02 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEcccc---------chhHHHHHHHHHhcCC
Q 003613 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR---------GFWGGYVKDYLEATEP 698 (807)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa~---------~f~~~~i~~~~~~~~~ 698 (807)
.++..++.+++.+..+++++|+||+-+|.-. .-...++++++++.++
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA 139 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc
Confidence 3567788888877778889999999999854 1223456666665543
No 206
>PTZ00445 p36-lilke protein; Provisional
Probab=29.74 E-value=1.3e+02 Score=31.98 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHhHHHHHHcCCCEEEEC---CCCCCCCCCCCCcccCCccCCCCCC--HHHHHHHHHHHHHcCcEEEE
Q 003613 529 LKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~---PIfes~s~hGYd~~Dy~~IDp~lGt--~edfk~LV~aaH~~GIkVIL 592 (807)
+..-.+.|++.||.+|-+= =+.... ..||+-.+ +-+..+++ ..+|+.|++++++.||+|++
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~H-sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKH-SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhh-cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 3333568999999999751 111101 23555443 33344443 35699999999999999986
No 207
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=29.44 E-value=1.1e+02 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVI 591 (807)
.+.+.|+.++++||++|-|.+-. . + ..+++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~-~---~-------~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDE-T---D-------DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCC-c---c-------chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 57889999999999999995321 0 0 0112222257889999999999999986
No 208
>PRK05967 cystathionine beta-lyase; Provisional
Probab=29.21 E-value=75 Score=36.56 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEeEeec
Q 003613 570 YGNIDELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 570 lGt~edfk~LV~aaH~~GIkVILD~V~N 597 (807)
.++..+++++++.||++|+-||+|-++.
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 6899999999999999999999999985
No 209
>PRK11059 regulatory protein CsrD; Provisional
Probab=29.14 E-value=70 Score=38.84 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=51.9
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCCCcccCCccCCCCC--------CHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYG--------NIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGYd~~Dy~~IDp~lG--------t~edfk~LV~aaH~~GIkVIL 592 (807)
.++..+...+..|+++||.... -=.-...+ +-..-+.||-+||+.|- +..-++.+++.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 4577888999999999997554 21111111 12333677888886543 233589999999999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
.+|=+.-
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9986654
No 210
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=28.88 E-value=48 Score=33.97 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=50.2
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCC---CCCCcccCCccCCCC--------CCHHHHHHHHHHHHHcCcEEEEe
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~---hGYd~~Dy~~IDp~l--------Gt~edfk~LV~aaH~~GIkVILD 593 (807)
+...+.+.+..|+++|+. |.|.=+-..... -..-..||-++|..+ ....-++.++..||..|++||+.
T Consensus 130 ~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 130 DLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 345688899999999998 444322111111 122235677777543 34567999999999999999999
Q ss_pred Eeecccc
Q 003613 594 VVLNHRC 600 (807)
Q Consensus 594 ~V~NHtg 600 (807)
.|=|...
T Consensus 209 gVe~~~~ 215 (240)
T cd01948 209 GVETEEQ 215 (240)
T ss_pred ecCCHHH
Confidence 9876543
No 211
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=1.5e+02 Score=33.59 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
.+++..+-+.|+++||+.=- +.. ..++. .+ =+.++|+++|+.||++|.|+++=+
T Consensus 16 l~~l~~ai~~GADaVY~G~~-~~~-~R~~a-~n--------fs~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEK-EFG-LRRRA-LN--------FSVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCc-ccc-ccccc-cc--------CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 34555566678999998733 111 11111 11 256789999999999999998743
No 212
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.44 E-value=5e+02 Score=29.18 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeeccccccc
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~ 603 (807)
.+.|++|++++|++|-++++ =++|.|...
T Consensus 76 i~~lr~la~~vh~~ga~~~~--QL~H~G~~~ 104 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFL--QLWHVGRVS 104 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEE--EcccCccCC
Confidence 46899999999999999998 457987653
No 213
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.44 E-value=1.3e+02 Score=34.24 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=47.0
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|..= +. +..-+..++ +--+.++..+.++.|++.|+. |-+|+++..-+..
T Consensus 103 ~~~l~~l~~~G~nrislGvQ--S~-----~~~~L~~l~-R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt 168 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ--TF-----DDPLLKLLG-RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQS 168 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc--cC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 57899999999999998631 11 111122222 333678888999999999996 8999999877764
No 214
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=27.70 E-value=1.5e+02 Score=29.12 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=45.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC-cEEEEeEeeccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRCA 601 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~G-IkVILD~V~NHtg~ 601 (807)
.+.++.|+++|++.|.++.= +.+.+-|+. +.+ -++.+++.+.++.++++| +.|.+.+++++.+.
T Consensus 100 ~~~~~~l~~~~~~~i~isl~--~~~~~~~~~-----~~~-~~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~~ 164 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQ--SGSDEVLKA-----INR-GHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGE 164 (216)
T ss_pred HHHHHHHHHcCCCeEEEecc--cCCHHHHHH-----hcC-CCCHHHHHHHHHHHHHhCCcceEEeEEecCCCC
Confidence 56788999999999998643 222111111 222 246699999999999999 99999999887643
No 215
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.62 E-value=1.6e+02 Score=34.28 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=49.1
Q ss_pred eeccCCCCCCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 515 FNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 515 F~Wd~~~~GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
|.|..+ |-..+.+.+-..-|.++|||++-|+-+.-... +-|-|+..| ...++.|.+-.+..||||+|-+
T Consensus 173 f~~n~~--~~n~qR~kDYAR~laSiGINg~v~NNVNvk~~-------e~~lit~~f--l~k~aklAdiFR~YGIK~yLsi 241 (684)
T COG3661 173 FWWNLP--GHNDQRMKDYARALASIGINGTVLNNVNVKKA-------ESYLITAPF--LAKAAKLADIFRPYGIKVYLSI 241 (684)
T ss_pred eecccc--ccchHHHHHHHHHHhhcCcceEEecccccchh-------hhheechHh--HHHHHHHHHHhhhccceEEEEe
Confidence 444433 55677888888889999999999986642211 112233332 4678888889999999999976
Q ss_pred ee
Q 003613 595 VL 596 (807)
Q Consensus 595 V~ 596 (807)
-|
T Consensus 242 nf 243 (684)
T COG3661 242 NF 243 (684)
T ss_pred cc
Confidence 44
No 216
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=54 Score=37.78 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=43.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCC----------CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEe
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSP----------EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~----------hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V 595 (807)
.--...-+..|+...|+..- +.... .+=...-+..+-...|+..+++++++.||++|+.|++|.+
T Consensus 126 ~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 126 VPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 33344445679988888754 32211 0111122334446789999999999999999999999997
No 217
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=26.61 E-value=2.6e+02 Score=33.04 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCcEEEEeE-eeccccc
Q 003613 572 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (807)
Q Consensus 572 t~edfk~LV~aaH~~GIkVILD~-V~NHtg~ 601 (807)
|.+|.+++|+-|.-||||||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999987 4677764
No 218
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.24 E-value=80 Score=40.44 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=50.4
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCC---CCCcccCCccCCCC--------CCHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPE---GYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~h---GYd~~Dy~~IDp~l--------Gt~edfk~LV~aaH~~GIkVIL 592 (807)
.+.+.+.+.+..|+++||..- |-=.-...++. .--+.|+-+||..| +...-++.+++.||+.||+||.
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~~-lddfg~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ia 1049 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRVV-LSDFGRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIA 1049 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEEE-EcCCCCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEe
Confidence 456788888999999998643 32221111111 11267888888554 2345588999999999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
.+|=+..
T Consensus 1050 egVEt~~ 1056 (1092)
T PRK09776 1050 GPVELPL 1056 (1092)
T ss_pred cccCCHH
Confidence 8875543
No 219
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=26.03 E-value=1.4e+02 Score=33.77 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~NHtg~d 602 (807)
.++|..|+++|++.|.|.. ++.+. .-+..+ .+-.+.++..+.++.+++.|+. |-+|+.++..+..
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d-----~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt 164 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQN-----SLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQT 164 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCH-----HHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Confidence 4789999999999999874 22221 111122 2344788999999999999997 7799999876654
No 220
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=25.81 E-value=1.2e+02 Score=32.55 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred HhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 531 ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
+.+..+..-.+..|++.++. ++. |+ .=+.+++++|++.||++|+.||+|.+...
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~-~~t--G~-----------~~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPN-NPT--GA-----------VLSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCC-CCC--Cc-----------ccCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 34444445567788876622 111 11 12468999999999999999999998754
No 221
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.50 E-value=80 Score=26.98 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHhHH-HHHHc-CCCEEEECCCCCCCCC--CCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 528 ELKEKAT-ELSSL-GFSVIWLPPPTESVSP--EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 528 GI~ekLd-YLk~L-Gvt~I~L~PIfes~s~--hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
.+.+.+. .|..+ |++...+.+....... ......|..-+=+.-|...+..++++.|+++|+++|.
T Consensus 11 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 11 AIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 3334443 44667 8888877653211100 1122334333345567788899999999999999875
No 222
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=25.29 E-value=1.7e+02 Score=31.87 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=38.8
Q ss_pred ceeeeeeeeccCCC--CC--CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHH
Q 003613 508 FEILCQGFNWESHK--SG--RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKF 583 (807)
Q Consensus 508 ~~v~~~~F~Wd~~~--~G--Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aa 583 (807)
.++++++.++.... .| -+-+.+...|.-+|+||+|+|=+.- |-+. .++.+.|
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h---------~p~~---------------~~~~~~c 68 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHH---------YPPS---------------PRFYDLC 68 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETT---------S--S---------------HHHHHHH
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEccc---------ccCc---------------HHHHHHH
Confidence 45677777665322 22 2466777889999999999998741 1111 2367778
Q ss_pred HHcCcEEEEeEee
Q 003613 584 HDVGMKILGDVVL 596 (807)
Q Consensus 584 H~~GIkVILD~V~ 596 (807)
-+.||-|+.++..
T Consensus 69 D~~GilV~~e~~~ 81 (298)
T PF02836_consen 69 DELGILVWQEIPL 81 (298)
T ss_dssp HHHT-EEEEE-S-
T ss_pred hhcCCEEEEeccc
Confidence 8899999999866
No 223
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.24 E-value=1.4e+02 Score=31.82 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeec
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~N 597 (807)
|+..-++.+++.|++.|-++-. . .+++.++++.|+++||+.++=+.++
T Consensus 92 G~~~fi~~~~~aG~~giiipDl-------------------~---~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL-------------------P---PEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC-------------------C---HHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5777889999999999988622 1 2589999999999999999855544
No 224
>PRK10551 phage resistance protein; Provisional
Probab=25.21 E-value=1.3e+02 Score=35.76 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=46.3
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCC---CCCCcccCCccCCC----CCCH----HHHHHHHHHHHHcCcEEEEeEee
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSR----YGNI----DELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~---hGYd~~Dy~~IDp~----lGt~----edfk~LV~aaH~~GIkVILD~V~ 596 (807)
.+.+.+..|+++||.... -=.-...++ -.--+.||-+||.. .++. .-++.+++.||+.||+||+++|=
T Consensus 398 ~~~~~l~~Lr~~G~~ial-DDFGtg~ssl~~L~~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVE 476 (518)
T PRK10551 398 EATKLFAWLHSQGIEIAI-DDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVE 476 (518)
T ss_pred HHHHHHHHHHHCCCEEEE-ECCCCCchhHHHHHhCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456778899999986443 211111111 11225688888843 3432 36899999999999999999886
Q ss_pred ccc
Q 003613 597 NHR 599 (807)
Q Consensus 597 NHt 599 (807)
+.-
T Consensus 477 t~~ 479 (518)
T PRK10551 477 TPE 479 (518)
T ss_pred cHH
Confidence 543
No 225
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=25.08 E-value=57 Score=40.12 Aligned_cols=75 Identities=9% Similarity=0.117 Sum_probs=52.0
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCC---CCCCcccCCccCCCCCC--------HHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSP---EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~---hGYd~~Dy~~IDp~lGt--------~edfk~LV~aaH~~GIkVIL 592 (807)
.++..+.+.|..|+++||.... .=+-.+.++ -.--+.||-+||..|-. ..-++.|+.-||+.||+||+
T Consensus 675 ~~~~~~~~~l~~l~~~G~~i~l-d~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via 753 (799)
T PRK11359 675 EHDTEIFKRIQILRDMGVGLSV-DDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVA 753 (799)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 4577889999999999997543 322211111 11124778888876622 23589999999999999999
Q ss_pred eEeeccc
Q 003613 593 DVVLNHR 599 (807)
Q Consensus 593 D~V~NHt 599 (807)
++|=+.-
T Consensus 754 ~gVe~~~ 760 (799)
T PRK11359 754 EGVETKE 760 (799)
T ss_pred EcCCCHH
Confidence 9887654
No 226
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.98 E-value=2.2e+02 Score=26.47 Aligned_cols=57 Identities=21% Similarity=0.120 Sum_probs=38.8
Q ss_pred HHHHHH-cCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 533 ATELSS-LGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 533 LdYLk~-LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
..++.. +|+..+...+.... ..-...|..-+=+.-|+..+..+.++.|+++|++||.
T Consensus 18 ~~~l~~~~~~~~~~~~~~~~~---~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 18 ESLLLDEAKIPVYVVKDYTLP---AFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHHhccCCCEEEecCccCc---CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 345555 48988887653211 1112334444447779999999999999999999985
No 227
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.95 E-value=95 Score=34.78 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHt 599 (807)
.+.|..||+.|++.++. .+..-++..=+..|.|.=-+.++..+.++.||+.||+|-.=+.+.|-
T Consensus 141 ~e~l~~LkeAGl~~i~~------~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG------TAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred HHHHHHHHHhCcccccC------cchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 68899999999999861 11111222222234443236778899999999999999888888766
No 228
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=24.76 E-value=1.5e+02 Score=33.87 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=47.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.++|..|+++|||-|.|..= +. +..-...+ -+.-+.++..+.++.|++.++.|-+|+++..-+..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ--S~-----~d~~L~~l-gR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ--SL-----KEDDLKKL-GRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC--cC-----CHHHHHHc-CCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 48999999999999998731 11 11111122 34456788888899999999999999999988764
No 229
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.83 E-value=67 Score=33.86 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=38.5
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCC-CC-CCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-RY-GNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp-~l-Gt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
........++|.+.|=+..-+.. +.+ .+ --.+++++++++||+.||+||+...+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~-------------~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGA-------------LGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHH-------------HHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECH
T ss_pred HHHHHHHHHcCCceeeeeccccc-------------cccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 56677888999999987643311 011 00 1246899999999999999999876653
No 230
>PLN02808 alpha-galactosidase
Probab=23.77 E-value=1.4e+02 Score=34.48 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=38.1
Q ss_pred cHHHHHHhHHH-----HHHcCCCEEEECCCCCCCC--CCCCCcccCCccCC-CCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 525 WYMELKEKATE-----LSSLGFSVIWLPPPTESVS--PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 525 dl~GI~ekLdY-----Lk~LGvt~I~L~PIfes~s--~hGYd~~Dy~~IDp-~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
+-+.|.+.++. |+++|++.|-|=--+.... ..|. ...|| +|- .-++.|++.+|++|||.=+
T Consensus 47 ~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~-----~~~d~~rFP--~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 47 NETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGN-----LVPKASTFP--SGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCC-----EeeChhhcC--ccHHHHHHHHHHCCCceEE
Confidence 44566666776 6899999998854432221 1121 12222 232 3699999999999998544
No 231
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=23.38 E-value=1.7e+02 Score=32.99 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=40.9
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
|++.+.+.+. + .+.+|.+.|+.... |..+ =+.+.+++|++-|+++|+-||.|-|....+
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~---G~~~----------~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG---GIRP----------APDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC---CCcC----------CCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 4555555442 2 57899999884322 2111 235799999999999999999999986544
No 232
>PLN02651 cysteine desulfurase
Probab=23.32 E-value=1.8e+02 Score=32.43 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=41.7
Q ss_pred HhHHHHHHcCCCEEEECCCCCCCC----------CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 531 EKATELSSLGFSVIWLPPPTESVS----------PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 531 ekLdYLk~LGvt~I~L~PIfes~s----------~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
.-+..++..|+..+++..- +... .......-...+....|...+++++++.||++|+.+++|.+-
T Consensus 103 ~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 103 DSCRHLQQEGFEVTYLPVK-SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 3344556678887777431 1110 011222223334556788999999999999999999999984
No 233
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.30 E-value=2e+02 Score=30.52 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=36.9
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
++.+.++++.++|++.|.|...-. +.|. +..-+.+++++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~----~~~~--------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNP----RSWK--------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCC----CCCC--------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 567889999999999999854221 1111 1124566777888888889998664
No 234
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.29 E-value=1.9e+02 Score=31.13 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeec
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~N 597 (807)
|+.+-+..+++.|++.|-++.. ..++..+++++|+++||..++=+.++
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 7888899999999999998721 23788999999999999988644443
No 235
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.20 E-value=2.3e+02 Score=28.03 Aligned_cols=59 Identities=15% Similarity=0.026 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHH---HcCcEEEEeEeeccc
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH---DVGMKILGDVVLNHR 599 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH---~~GIkVILD~V~NHt 599 (807)
.+..++...+.+++|+++|.+.|.+.. ..+ ++.+.+.+.++++. +.++-||+...+-++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~------------~~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGS------------LKE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHH------------HhC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 678999999999999999999876411 111 13444444444433 359999997765544
No 236
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=23.13 E-value=1.8e+02 Score=32.90 Aligned_cols=60 Identities=8% Similarity=-0.094 Sum_probs=42.6
Q ss_pred cHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 525 dl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
|++.+.+.+. -.+.+|++.|++..... ...+.+.+++|++-|+++|+-||+|=|..+.+.
T Consensus 173 d~~~l~~~l~----~~~aaiiiep~~~~gg~-------------~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 173 DLAAVKAVID----DHTCAVVVEPIQGEGGV-------------IPATPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHhc----CCeEEEEEecccCCCCC-------------ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 5666655553 14678888887643320 013578899999999999999999999776544
No 237
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.10 E-value=1.8e+02 Score=29.38 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=40.0
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
.|+.-..+...-|+++||. |+. .|-+..=+.+.+.++++.+.++|++||+
T Consensus 9 SD~~~~~~a~~~L~~~gi~---------------~dv----~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 9 SDLPTMKKAADILEEFGIP---------------YEL----RVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred hhHHHHHHHHHHHHHcCCC---------------eEE----EEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 4777777888899999998 222 2445556899999999999999999887
No 238
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.01 E-value=2.7e+02 Score=32.57 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=46.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC-cEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~G-IkVILD~V~NHtg~d 602 (807)
.++|..++++|||.|.|.- ++.+ ..-...+ -+.-+.++..+.++.+++.| +.|.+|+++..-+..
T Consensus 163 ~e~l~~l~~aGvnRiSiGV--QSf~-----d~vLk~l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT 228 (449)
T PRK09058 163 DEKADAALDAGANRFSIGV--QSFN-----TQVRRRA-GRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQT 228 (449)
T ss_pred HHHHHHHHHcCCCEEEecC--CcCC-----HHHHHHh-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCC
Confidence 5789999999999999762 1111 1111111 23336788999999999999 899999999877764
No 239
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=22.90 E-value=2.9e+02 Score=27.60 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=39.0
Q ss_pred HHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 534 dYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
..|..+|+.++.+..... ..-...|..-+=+.-|...+..++++.|+++|++||.
T Consensus 53 ~~l~~~g~~~~~~~~~~~----~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 53 MRLMHLGLNVYVVGETTT----PAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHhCCCeEEEeCCCCC----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 357778999988764321 1223334333446678889999999999999999987
No 240
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=22.87 E-value=2.3e+02 Score=31.42 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=43.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE-EEEeEee
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 596 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk-VILD~V~ 596 (807)
.+.++.|++.|++.|.++- ++.++.-|..+...-|+.+...+-+++|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4578899999999998763 3333333344443346889999999999999997 7777665
No 241
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=22.80 E-value=2.2e+02 Score=31.42 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=44.7
Q ss_pred HHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCc-EEEEeEeec
Q 003613 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLN 597 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GI-kVILD~V~N 597 (807)
+.+.++.|++.|++.|.++- ++.+..-|..+... ++.+.+.+-++.|.+.|+ .|.+-.|+-
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv~ 168 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVLM 168 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEEE
Confidence 34678899999999998764 33334334455443 788999999999999999 887777653
No 242
>PRK15108 biotin synthase; Provisional
Probab=22.73 E-value=2.4e+02 Score=31.81 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=45.6
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.+.+..|++.|++.+-++ .++ +...|. .|-+ -++.++..+.++.||+.||+|-.=+.+.|
T Consensus 136 ~e~l~~LkeAGld~~n~~--leT-~p~~f~-----~I~~-~~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHN--LDT-SPEFYG-----NIIT-TRTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred HHHHHHHHHcCCCEEeec--ccc-ChHhcC-----CCCC-CCCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 788999999999998764 333 222332 3322 24889999999999999999988888887
No 243
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=22.70 E-value=1.4e+02 Score=34.00 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=46.4
Q ss_pred HhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 531 ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
++|..|+++||+.|.|.- ++.+ ..-...+ -+--+.++..+.++.+++.++.|-+|++++--+..
T Consensus 105 e~L~~l~~~GvnrislGv--QS~~-----d~vL~~l-~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt 168 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV--QALN-----DADLRFL-GRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQT 168 (380)
T ss_pred HHHHHHHHcCCCEEEEec--ccCC-----HHHHHHc-CCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCC
Confidence 889999999999999863 1111 1111122 23347788889999999999999999999876654
No 244
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.65 E-value=2.9e+02 Score=30.56 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCcEEEEeEeecccccccCcCCCcccccCCcCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003613 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (807)
Q Consensus 573 ~edfk~LV~aaH~~GIkVILD~V~NHtg~d~~~~~~~w~~~~g~~~w~~~~~~~~~~~f~~~~~~~~~~~~~~lpdLn~~ 652 (807)
.+++.+-|..|+++||+|+.-++++=-+
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLPg---------------------------------------------------- 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLPG---------------------------------------------------- 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCCC----------------------------------------------------
Confidence 4578889999999999998755443111
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEccc
Q 003613 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (807)
Q Consensus 653 np~Vr~~i~~~l~~Wi~e~GVDGfRlDaa 681 (807)
+-++.+.+.++... ..||||.-+.--
T Consensus 195 --E~~~~mleTak~v~-~~~v~GIKlH~L 220 (312)
T COG1242 195 --ETRDEMLETAKIVA-ELGVDGIKLHPL 220 (312)
T ss_pred --CCHHHHHHHHHHHH-hcCCceEEEEEE
Confidence 12567788888666 899999998764
No 245
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.51 E-value=1.7e+02 Score=31.18 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcE
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIk 589 (807)
-+...+..|++||.+.|=+.|+- | +-..+||+.+.++|-++|+.
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~------G------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMG------G------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCCc
Confidence 45667899999999999988762 1 22457777777777777775
No 246
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.51 E-value=2.2e+02 Score=29.35 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=39.7
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEE
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVIL 592 (807)
+++-+..++.++.+.+.|+++|-+.|+.... +..++++|.++||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~----------------------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPDS----------------------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTTT----------------------THHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHHH----------------------HHHHHHHHhhcCceEEE
Confidence 4667888899999999999999999865322 34688999999999998
No 247
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.48 E-value=1.9e+02 Score=30.31 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEe
Q 003613 533 ATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (807)
Q Consensus 533 LdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD 593 (807)
+..|+++|+++|-+. -.+ + .-..++..+++++|++.||.+|++
T Consensus 78 ~~~l~~~G~~~vii~-~se-----r------------~~~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 78 PEAVKDAGAVGTLIN-HSE-----R------------RLTLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHcCCCEEEEe-ccc-----c------------ccCHHHHHHHHHHHHHCCCeEEEE
Confidence 889999999999765 110 1 112345889999999999999974
No 248
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=22.26 E-value=2.1e+02 Score=31.75 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=44.8
Q ss_pred HHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCc-EEEEeEeec
Q 003613 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLN 597 (807)
Q Consensus 529 I~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GI-kVILD~V~N 597 (807)
+.+.++.|++.|++.|.++ -++.++.-|..+-. -|+.+...+.+++|.+.|+ .|-+..|+.
T Consensus 103 l~~~~~~L~~aGl~~v~IS-------lDs~~~e~~~~i~~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~~ 164 (329)
T PRK13361 103 LARFAAELADAGLKRLNIS-------LDTLRPELFAALTR-NGRLERVIAGIDAAKAAGFERIKLNAVIL 164 (329)
T ss_pred HHHHHHHHHHcCCCeEEEE-------eccCCHHHhhhhcC-CCCHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 3467889999999999874 23333433444433 4788899999999999999 888887764
No 249
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.08 E-value=1.6e+02 Score=28.15 Aligned_cols=58 Identities=10% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCCCC---------CCC--cccCCccCCCCCCHHHHHHHHHHHHH
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVSPE---------GYM--PRDLYNLSSRYGNIDELKDVVNKFHD 585 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s~h---------GYd--~~Dy~~IDp~lGt~edfk~LV~aaH~ 585 (807)
.+.+.|+.|.+.|++.|.+.|.+-.+.-| .|. -....--.|-+.+.+++.++++++++
T Consensus 57 ~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 57 TPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 67888999999999999999998766421 122 11111123666677888888887764
No 250
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=22.02 E-value=1.4e+02 Score=32.56 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCcEEEEeEeecc
Q 003613 570 YGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (807)
Q Consensus 570 lGt~edfk~LV~aaH~~GIkVILD~V~NH 598 (807)
.|..++++++++-||++|+.|++|.+...
T Consensus 161 tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 161 TGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 46677899999999999999999998643
No 251
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.70 E-value=1.9e+02 Score=31.83 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHcCC-CEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 528 ELKEKATELSSLGF-SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 528 GI~ekLdYLk~LGv-t~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
..++.|..|+++|+ ..|+|.. ++.+.. -+..++. --+.+++.+.++.++++||+|..|+.++--+.
T Consensus 124 e~l~~L~~l~~~G~~~~i~lGl--QS~~d~-----~L~~i~R-g~t~~~~~~ai~~l~~~gi~v~~~lI~GlPge 190 (302)
T TIGR01212 124 EVLDLLAEYVERGYEVWVELGL--QTAHDK-----TLKKINR-GHDFACYVDAVKRARKRGIKVCSHVILGLPGE 190 (302)
T ss_pred HHHHHHHHhhhCCceEEEEEcc--CcCCHH-----HHHHHcC-cChHHHHHHHHHHHHHcCCEEEEeEEECCCCC
Confidence 45666777777899 4677652 222210 0111222 12678999999999999999999999876543
No 252
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=21.66 E-value=1.9e+02 Score=32.76 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHcCCCEEEECCCCCCCC----------CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 528 ELKEKATELSSLGFSVIWLPPPTESVS----------PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 528 GI~ekLdYLk~LGvt~I~L~PIfes~s----------~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
.+..-+..++..|+..++++.- +... ..+....-...+....|...+++++++.||++|+.|++|.+-
T Consensus 104 s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 104 AVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 3344444566678887777532 1110 011122222344455788899999999999999999999984
No 253
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.64 E-value=3.9e+02 Score=33.11 Aligned_cols=56 Identities=5% Similarity=0.131 Sum_probs=40.0
Q ss_pred HHHHHhHHHHHHcCCCEEEECCCCCCCC---CCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 527 MELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 527 ~GI~ekLdYLk~LGvt~I~L~PIfes~s---~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
..+.+.|.-.|.+|+|++-+..+.-+-- -..|+ |+.. |.. +++.|++.|++|||==
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fd----------f~~~-D~~-~l~~a~~~Gl~vil~t 88 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFD----------FTWL-DEI-FLERAYKAGLYVILRT 88 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccC----------cccc-hHH-HHHHHHhcCceEEEec
Confidence 4788999999999999999877654321 11122 2223 334 8999999999999943
No 254
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=21.51 E-value=1.6e+02 Score=33.67 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=46.8
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.++|..|+++||+.|.|.- ++.+ ..-+..++ +--+.++..+.++.+++.+..|-+|++++.-+..
T Consensus 122 ~e~L~~l~~~GvnrisiGv--QS~~-----~~~L~~l~-R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgqt 186 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGI--QSFN-----DAHLKALG-RIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQT 186 (394)
T ss_pred HHHHHHHHHcCCCeEEEec--ccCC-----HHHHHHhC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCCC
Confidence 3889999999999999862 2221 11111222 2335678888899999999999999999987754
No 255
>PRK08114 cystathionine beta-lyase; Provisional
Probab=21.47 E-value=1.1e+02 Score=35.17 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=41.0
Q ss_pred HHHHHcCCCEEEECCCCC----CCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcC--cEEEEeEee
Q 003613 534 TELSSLGFSVIWLPPPTE----SVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVVL 596 (807)
Q Consensus 534 dYLk~LGvt~I~L~PIfe----s~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~G--IkVILD~V~ 596 (807)
..|+..||+..++.+.-. ..-.......=.-.+-...|...|++++++.||++| +.||+|-++
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 467889999999886411 000011111111223344677889999999999985 999999876
No 256
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.08 E-value=1.2e+02 Score=31.81 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=45.7
Q ss_pred CcHHHHHHhHHHHHHcCCCEEEEC--------------CCCCCCCCCCCCcccCCccCCCCCC-----------------
Q 003613 524 RWYMELKEKATELSSLGFSVIWLP--------------PPTESVSPEGYMPRDLYNLSSRYGN----------------- 572 (807)
Q Consensus 524 Gdl~GI~ekLdYLk~LGvt~I~L~--------------PIfes~s~hGYd~~Dy~~IDp~lGt----------------- 572 (807)
.||..+.+.+..+.+.|.+.|.|- |+.++-..| +...-||++.-+--+
T Consensus 14 ~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~-~~~~~ffD~HmMV~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH-TGADPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhc-cCCCcceeEEEeecCHHHHHHHHHhcCcceEE
Confidence 678999999999999999999982 222222222 111114444321111
Q ss_pred -----HHHHHHHHHHHHHcCcEEEEeE
Q 003613 573 -----IDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 573 -----~edfk~LV~aaH~~GIkVILD~ 594 (807)
-++..++++.+|++||++=+=+
T Consensus 93 fH~E~~q~~~~lv~~ir~~Gmk~G~al 119 (224)
T KOG3111|consen 93 FHYEATQKPAELVEKIREKGMKVGLAL 119 (224)
T ss_pred EEEeeccCHHHHHHHHHHcCCeeeEEe
Confidence 2358899999999999987644
No 257
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.94 E-value=2.1e+02 Score=30.48 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 527 ~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
.+..+-++.+++.|+++|-+. |-.+=..++..++++.+|++||++++=+-+
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 366777888999999999984 101112357889999999999999995443
No 258
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.94 E-value=1.9e+02 Score=34.22 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeeccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~ 601 (807)
.+.|..+++.|++.|.+. .|+.+... +..++- -.+.++..+.++.++++||.+.+++++..-+.
T Consensus 287 ~ell~~l~~aG~~~v~iG--iES~~~~~-----L~~~~K-~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLG--TEAAAQAT-----LDHFRK-GTTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred HHHHHHHHHhCCcEEEEc--cccCCHHH-----HHHhcC-CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 467888999999999985 34443211 122222 24778899999999999999999999976554
No 259
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.76 E-value=1.2e+02 Score=33.86 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcc---cCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPR---DLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~---Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg~d 602 (807)
.+.+..|++.|++.+... |-.+. =+-.+.|.-.+.++..+.++.||+.||+|...+++.| +..
T Consensus 143 ~e~l~~Lk~aG~~~~~~~---------g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt 208 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGG---------GAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VET 208 (340)
T ss_pred HHHHHHHHHcCCCcCCCC---------cccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCC
Confidence 688999999999977411 11111 0122335556888999999999999999999999997 543
No 260
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.50 E-value=3.6e+02 Score=28.59 Aligned_cols=60 Identities=12% Similarity=0.259 Sum_probs=40.8
Q ss_pred HHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC-HHHHHHHHHHHHHcCcEEEEeE
Q 003613 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN-IDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 526 l~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt-~edfk~LV~aaH~~GIkVILD~ 594 (807)
++-+...++..+.||+..|-+.|... +|... -+..+-. .+.+++|++.|.++||++.+.-
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 55677778899999999998877532 22111 0011100 1358999999999999999983
No 261
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=20.46 E-value=2.1e+02 Score=31.62 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=28.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCcEEEEeEe--eccc
Q 003613 566 LSSRYGNIDELKDVVNKFHDVGMKILGDVV--LNHR 599 (807)
Q Consensus 566 IDp~lGt~edfk~LV~aaH~~GIkVILD~V--~NHt 599 (807)
+....|...+++++++.||++|+.||+|.+ +.|.
T Consensus 147 ~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~ 182 (353)
T TIGR03235 147 VNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI 182 (353)
T ss_pred ccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc
Confidence 345568888899999999999999999998 4444
No 262
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.36 E-value=1.5e+02 Score=32.54 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEeecccc
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~NHtg 600 (807)
.+.|..||+.|++.+...- .|.. +..-+..+-|.--+.++..+.++.||+.||++..-+.+.|--
T Consensus 107 ~e~l~~LkeAGl~~i~~~g-~E~l-----~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~E 171 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTG-AEIL-----DDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVE 171 (309)
T ss_pred HHHHHHHHHcCCCcCCCCc-chhc-----CHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCC
Confidence 6779999999999884110 1111 111112233333477888899999999999999999998763
No 263
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=20.35 E-value=1.4e+02 Score=31.21 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHc--CcEEEEeEeecccc
Q 003613 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV--GMKILGDVVLNHRC 600 (807)
Q Consensus 527 ~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~--GIkVILD~V~NHtg 600 (807)
+.+.+.|+.|+++|+++|.+.=+. ++..+++. +++|++|.-+|=..
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~g----------------------------~~~~~k~~~~~~~i~~~~~~nv~N 49 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNPG----------------------------LLELLKELGPDLKIIADYSLNVFN 49 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCHH----------------------------HHHHHHHhCCCCcEEEecCccCCC
Confidence 578889999999999999976221 56666666 77888887666443
No 264
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.27 E-value=1.1e+03 Score=25.43 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeE
Q 003613 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (807)
Q Consensus 530 ~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~ 594 (807)
++.++...+.|++.|.+.= ..-..+..+++|+.|+++|++|.+-+
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567777889999988741 11157899999999999999887654
No 265
>PLN02721 threonine aldolase
Probab=20.22 E-value=2.1e+02 Score=31.23 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=38.6
Q ss_pred cHHHHHHhHHHHHHc---CCCEEEECCCCCCCCCCCCCcccCCccCCCCCCHHHHHHHHHHHHHcCcEEEEeEee
Q 003613 525 WYMELKEKATELSSL---GFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (807)
Q Consensus 525 dl~GI~ekLdYLk~L---Gvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edfk~LV~aaH~~GIkVILD~V~ 596 (807)
|++.+.+.+.....- ....|+|.|+..++...-| +.+++++|++.||++|+.||+|...
T Consensus 119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~-------------~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCL-------------SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccc-------------cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 666777666533111 2357888776544331111 3567999999999999999999864
No 266
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=20.17 E-value=84 Score=34.50 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=39.3
Q ss_pred CCcHHHHHHhHHHHHHcCCCEEEECCCCCCCCCCCCCcccCCccCCCCCC------HHHHHHHHHHHHHcCcEEEE
Q 003613 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN------IDELKDVVNKFHDVGMKILG 592 (807)
Q Consensus 523 GGdl~GI~ekLdYLk~LGvt~I~L~PIfes~s~hGYd~~Dy~~IDp~lGt------~edfk~LV~aaH~~GIkVIL 592 (807)
--|.+.|.+.|+.|.++||++|||==|=.. -| ...+...+...-. ..+++++++++|-. ++||.
T Consensus 122 ~eWkdii~~~l~rL~d~GfdGvyLD~VD~y----~Y-~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi~ 191 (300)
T COG2342 122 PEWKDIIRSYLDRLIDQGFDGVYLDVVDAY----WY-VEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVIP 191 (300)
T ss_pred HHHHHHHHHHHHHHHHccCceEEEeeechH----HH-HHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEEe
Confidence 357888999999999999999998644211 11 1111222222221 23677777777766 77664
Done!