BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003615
(807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 21/231 (9%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK--DWCFTCELENLI------ 638
GLIN GN+C+ + +LQCL P + + +HS C + D CF+C L+ ++
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 639 LRAKDGKSPLSP-------IGILSRLQSIGSQLGNGREEDAHEFLRYAIDTM-QSVCIEE 690
L K S + I +L+ I L ++DAHEF ++ I+ + QS ++
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 691 AGVNASGPLEDET--TLIGLTFGGYLRSKIKCTKCHGKSERQ-ERMMDLTVEIEGDIGNL 747
++ ++ F G L S I C C S+ + +DL+++I+ D L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK-DKKKL 321
Query: 748 EEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ 798
E L + E L N Y C C S + A K+L I + P++L + LKRF+
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFE 371
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 21/231 (9%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK--DWCFTCELENLI------ 638
GLIN G++C+ + +LQCL P + + +HS C + D CF+C L+ ++
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 639 LRAKDGKSPLSP-------IGILSRLQSIGSQLGNGREEDAHEFLRYAIDTM-QSVCIEE 690
L K S + I +L+ I L ++DAHEF ++ I+ + QS ++
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 691 AGVNASGPLEDET--TLIGLTFGGYLRSKIKCTKCHGKSERQ-ERMMDLTVEIEGDIGNL 747
++ ++ F G L S I C C S+ + +DL+++I+ D L
Sbjct: 263 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK-DKKKL 321
Query: 748 EEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ 798
E L + E L N Y C C S + A K+L I + P++L + LKRF+
Sbjct: 322 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFE 371
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 21/231 (9%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK--DWCFTCELENLI------ 638
GLIN G++C+ + +LQCL P + + +HS C + D CF+C L+ ++
Sbjct: 138 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 197
Query: 639 LRAKDGKSPLSP-------IGILSRLQSIGSQLGNGREEDAHEFLRYAIDTM-QSVCIEE 690
L K S + I +L+ I L ++DAHEF ++ I+ + QS ++
Sbjct: 198 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 257
Query: 691 AGVNASGPLEDET--TLIGLTFGGYLRSKIKCTKCHGKSERQ-ERMMDLTVEIEGDIGNL 747
++ ++ F G L S I C C S+ + +DL+++I+ D L
Sbjct: 258 PNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK-DKKKL 316
Query: 748 EEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQ 798
E L + E L N Y C C S + A K+L I + P++L + LKRF+
Sbjct: 317 YECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFE 366
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 27/239 (11%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENL--ILRAKD 643
GL N GN+C+ N +LQCL+ T L Y LQ L+ ++ T +E +++
Sbjct: 10 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69
Query: 644 GKSP---LSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-- 698
SP +SP +++Q + ++DA EFLR+ +D + + S P
Sbjct: 70 TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129
Query: 699 -----------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741
LE E + IG F G L+S + CT C S + DL++ I
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189
Query: 742 GD---IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
L + +R +T ++LDG+ K C RC+ ++ KK +I P IL + LKRF
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 27/239 (11%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENL--ILRAKD 643
GL N GN+C+ N +LQCL+ T L Y LQ L+ ++ T +E +++
Sbjct: 29 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 88
Query: 644 GKSP---LSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-- 698
SP +SP +++Q + ++DA EFLR+ +D + + S P
Sbjct: 89 TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 148
Query: 699 -----------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741
LE E + IG F G L+S + CT C S + DL++ I
Sbjct: 149 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 208
Query: 742 GD---IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
L + +R +T ++LDG+ K C RC+ ++ KK +I P IL + LKRF
Sbjct: 209 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 267
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENL--ILRAKD 643
GL N GN+C+ N +LQCL+ T L Y LQ L+ ++ T +E +++
Sbjct: 36 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 95
Query: 644 GKSP---LSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-- 698
SP +SP +++Q + ++DA EFLR+ +D + + S P
Sbjct: 96 TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 155
Query: 699 -----------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741
LE E + IG F G L+S + CT C S + DL++ I
Sbjct: 156 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 215
Query: 742 GDIG---NLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
L + +R +T ++LDG+ C RC+ ++ KK +I P IL + LKRF
Sbjct: 216 KRGYPEVTLMDCMRLFTKEDVLDGDAAPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 274
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENL--ILRAKD 643
GL N GN+ + N +LQCL+ T L Y LQ L+ ++ T +E +++
Sbjct: 10 AGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69
Query: 644 GKSP---LSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP-- 698
SP +SP +++Q + ++DA EFLR+ +D + + S P
Sbjct: 70 TSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPEN 129
Query: 699 -----------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741
LE E + IG F G L+S + CT C S + DL++ I
Sbjct: 130 LDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIA 189
Query: 742 GD---IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
L + +R +T ++LDG+ K C RC+ ++ KK +I P IL + LKRF
Sbjct: 190 KRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRF 248
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 45/255 (17%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC--AKKDWCFTCELENLI--LRAK 642
GL N GN+C+ N VLQCL+ T PL + L+ +E + T ++I L
Sbjct: 5 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP 64
Query: 643 DGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAG-----VNASG 697
D ++P + Q ++DA EFL+ ++ + + I G + A+G
Sbjct: 65 DSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLH-LEINRRGRRAPPILANG 123
Query: 698 P------------------------------LEDETTLIGLTFGGYLRSKIKCTKCHGKS 727
P LE E + I F G L+S +KC C +S
Sbjct: 124 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 183
Query: 728 ERQERMMDLTVEI-----EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLT 782
E DL++ I G +L + +T E L+ EN CDRC+ ++ KKLT
Sbjct: 184 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT 243
Query: 783 IVEAPNILTIALKRF 797
+ P IL + L RF
Sbjct: 244 VQRFPRILVLHLNRF 258
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 45/255 (17%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC--AKKDWCFTCELENLI--LRAK 642
GL N GN+C+ N VLQCL+ T PL + L+ +E + T ++I L
Sbjct: 18 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP 77
Query: 643 DGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAG-----VNASG 697
D ++P + Q ++DA EFL+ ++ + + I G + A+G
Sbjct: 78 DSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLH-LEINRRGRRAPPILANG 136
Query: 698 P------------------------------LEDETTLIGLTFGGYLRSKIKCTKCHGKS 727
P LE E + I F G L+S +KC C +S
Sbjct: 137 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 196
Query: 728 ERQERMMDLTVEI-----EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLT 782
E DL++ I G +L + +T E L+ EN CDRC+ ++ KKLT
Sbjct: 197 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT 256
Query: 783 IVEAPNILTIALKRF 797
+ P IL + L RF
Sbjct: 257 VQRFPRILVLHLNRF 271
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 45/255 (17%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC--AKKDWCFTCELENLI--LRAK 642
GL N GN+C+ N VLQCL+ T PL + L+ +E + T ++I L
Sbjct: 24 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHP 83
Query: 643 DGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAG-----VNASG 697
D ++P + Q ++DA EFL+ ++ + + I G + A+G
Sbjct: 84 DSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLH-LEINRRGRRAPPILANG 142
Query: 698 P------------------------------LEDETTLIGLTFGGYLRSKIKCTKCHGKS 727
P LE E + I F G L+S +KC C +S
Sbjct: 143 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 202
Query: 728 ERQERMMDLTVEI-----EGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLT 782
E DL++ I G +L + +T E L+ EN CDRC+ ++ KKLT
Sbjct: 203 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT 262
Query: 783 IVEAPNILTIALKRF 797
+ P IL + L RF
Sbjct: 263 VQRFPRILVLHLNRF 277
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 30/239 (12%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCF----TCELENLILRA- 641
GL N GN+CY N +LQCL P L YF + + + + + E +I++A
Sbjct: 64 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKAL 123
Query: 642 -KDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQ---------------- 684
+SP + I Q ++D+ E L + +D +
Sbjct: 124 WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN 183
Query: 685 -----SVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVE 739
E L +E+ ++ L F G +S ++C CH KS E M L++
Sbjct: 184 NDHLDDFKAAEHAWQKHKQL-NESIIVAL-FQGQFKSTVQCLTCHKKSRTFEAFMYLSLP 241
Query: 740 IEGDIG-NLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
+ L++ LR ++ E L N++ C C++ + KK+ I + P +L + LKRF
Sbjct: 242 LASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRF 300
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 30/239 (12%)
Query: 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCF----TCELENLILRA- 641
GL N GN+CY N +LQCL P L YF + + + + + E +I +A
Sbjct: 64 GLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIXKAL 123
Query: 642 -KDGKSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQ---------------- 684
+SP + I Q ++D+ E L + D +
Sbjct: 124 WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKADNRKRYKEEN 183
Query: 685 -----SVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVE 739
E L +E+ ++ L F G +S ++C CH KS E L++
Sbjct: 184 NDHLDDFKAAEHAWQKHKQL-NESIIVAL-FQGQFKSTVQCLTCHKKSRTFEAFXYLSLP 241
Query: 740 IEGDIG-NLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
+ L++ LR ++ E L N++ C C++ + KK+ I + P +L + LKRF
Sbjct: 242 LASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRF 300
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 111/265 (41%), Gaps = 51/265 (19%)
Query: 581 VELQP--CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWC-----FTCE 633
+ +QP CGL N GN+ + N LQCL+ T PLT YFL+ + E + +
Sbjct: 2 MHIQPGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEA 61
Query: 634 LENLILRAKDGK-SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQ-------- 684
LI + G+ + ++P +++ Q +++D+ E L + +D +
Sbjct: 62 YAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKK 121
Query: 685 --------------SVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQ 730
+V +EA N L +++ ++ TF G +S + C +C S
Sbjct: 122 KPYLELKDANGRPDAVVAKEAWENHR--LRNDSVIVD-TFHGLFKSTLVCPECAKVSVTF 178
Query: 731 ERMMDLTVEI--------EGDIGN----------LEEALRRYTGTEILDGENKYKCDRCK 772
+ LT+ + EG + L + + +T E L + + C CK
Sbjct: 179 DPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK 238
Query: 773 SYEKAKKKLTIVEAPNILTIALKRF 797
+++A KK + P IL + LKRF
Sbjct: 239 KHQQATKKFDLWSLPKILVVHLKRF 263
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 28/218 (12%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPL-TAYFLQGLHSKECAKKDWCFTCELENLILRAKDG 644
GL N G +CY N +LQ L FT L A ++ + +K L+ + +
Sbjct: 176 VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK---SVPLALQRVFYELQHS 232
Query: 645 KSPLSPIGILSRLQSIGSQ-LGNGREEDAHEFLRYAIDT----MQSVCIEEAGVNASGPL 699
P +G +S G + L + + D E R +D M+ C+E
Sbjct: 233 DKP---VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGT-------- 281
Query: 700 EDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEI 759
I F G + S I+C + +S+R+E D+ + I+G N+ E+ Y E
Sbjct: 282 ------IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGK-KNIFESFVDYVAVEQ 334
Query: 760 LDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
LDG+NKY ++A+K + + P +L + L RF
Sbjct: 335 LDGDNKYDAGE-HGLQEAEKGVKFLTLPPVLHLQLMRF 371
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 29/223 (13%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPL-TAYFLQGLHSKECAKKDWCFTCELENLILRAKDG 644
GL N G +CY N +LQ L FT L A ++ + +K L+ + +
Sbjct: 7 VGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSK---SVPLALQRVFYELQHS 63
Query: 645 KSPLSPIGILSRLQSIGSQ-LGNGREEDAHEFLRYAIDT----MQSVCIEEAGVNASGPL 699
P +G +S G + L + + D E R +D M+ C+E
Sbjct: 64 DKP---VGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGT-------- 112
Query: 700 EDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEI 759
I F G + S I+C + +S+R+E D+ + I+G N+ E+ Y E
Sbjct: 113 ------IPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGK-KNIFESFVDYVAVEQ 165
Query: 760 LDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSP 802
LDG+NKY ++A+K + + P +L + L RF ++ P
Sbjct: 166 LDGDNKYDAGE-HGLQEAEKGVKFLTLPPVLHLQLMRF-MYDP 206
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK 645
GL N G +CY N +LQ L FT L + + K + L+ D
Sbjct: 7 VGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLALQRVFYELQHSD-- 64
Query: 646 SPLSPIGILSRLQSIGSQ-LGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETT 704
P+G +S G + L + + D E R +D +++ + G G
Sbjct: 65 ---KPVGTKKLTKSFGWETLDSFXQHDVQELCRVLLDNVEN---KXKGTCVEGT------ 112
Query: 705 LIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGEN 764
I F G S I+C + +S+R+E D+ + I+G N+ E+ Y E LDG+N
Sbjct: 113 -IPKLFRGKXVSYIQCKEVDYRSDRREDYYDIQLSIKGK-KNIFESFVDYVAVEQLDGDN 170
Query: 765 KYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
KY ++A+K + + P +L + L RF
Sbjct: 171 KYDAGE-HGLQEAEKGVKFLTLPPVLHLQLXRF 202
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 91/234 (38%), Gaps = 27/234 (11%)
Query: 585 PCGLINCGNSCYANVVLQCLAFTP----PLTAYFLQGLHSKECAKKDWCFTCELENLILR 640
PCGL N GN+CY N +QC+ P L Y S E A + T L +L
Sbjct: 14 PCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQY-ITAALRDLFDS 72
Query: 641 AKDGKSPLSPIGILSRLQSIGSQL------GNGREEDAHEFLRYAIDTMQSV--CIEEAG 692
S + PI +L L Q G ++DA+E + +Q IE+
Sbjct: 73 MDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS 132
Query: 693 VNASGPLE-------DETTLIGLTFGGYLRSKIKCTKCHGK--SERQERMMDLTVEIEGD 743
V + + +LI FG + +KCT+ + ++ +E + L+ I +
Sbjct: 133 VKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE 192
Query: 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797
+ L L+ EI + R Y K+ K I P LTI + RF
Sbjct: 193 VKYLFTGLKLRLQEEI--TKQSPTLQRNALYIKSSK---ISRLPAYLTIQMVRF 241
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430)
Of Human Zinc Finger Mynd Domain Containing Protein 10
Length = 60
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 69 VPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116
P+ P+CA C + + RC+RC+ YC +CQ+ HW + H C PS
Sbjct: 12 APERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK-HGKTCSGPS 58
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 69 VPQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQ 106
P+ P+CA C + + RC+RC+ YC +CQ+ HW +
Sbjct: 12 APERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEK 49
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 61 YGYSTTVYVPQHPQCAVCFSPT--TTRCARCKAVRYCSGKCQIVHWRQGHKDECQP 114
Y Y TV + C CF+ ++C RCK YC+ +CQ W HK EC P
Sbjct: 39 YAYVLTVN-ERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 61 YGYSTTVYVPQHPQCAVCFSPT--TTRCARCKAVRYCSGKCQIVHWRQGHKDECQP 114
Y Y TV + C CF+ ++C RCK YC+ +CQ W HK EC P
Sbjct: 39 YAYVLTVN-ERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 61 YGYSTTVYVPQHPQCAVCFSPT--TTRCARCKAVRYCSGKCQIVHWRQGHKDECQP 114
Y Y TV + C CF+ ++C RCK YC+ +CQ W HK EC P
Sbjct: 39 YAYVLTVN-ERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 61 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 88
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 61 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 88
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 63 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 90
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 97 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 124
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 62 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 89
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 85 RCARCKAVRYCSGKCQIVHWRQGHKDECQ 113
RC++C+ +YCS KCQ W HK EC+
Sbjct: 62 RCSQCRVAKYCSAKCQKKAW-PDHKRECK 89
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 75 CAVCF--SPTTTRCARCKAVRYCSGKCQIVHWRQGHKDEC 112
C CF RC +CK YC CQ W HK+EC
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNEC 90
>pdb|1OD0|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OD0|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIF|A Chain A, Family 1 B-glucosidase From Thermotoga Maritima
pdb|1OIF|B Chain B, Family 1 B-glucosidase From Thermotoga Maritima
pdb|1OIM|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIM|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIN|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1OIN|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima
pdb|1W3J|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Tetrahydrooxazine
pdb|1W3J|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Tetrahydrooxazine
pdb|1UZ1|A Chain A, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Isofagomine Lactam
pdb|1UZ1|B Chain B, Family 1 B-Glucosidase From Thermotoga Maritima In Complex
With Isofagomine Lactam
pdb|2CBU|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Castanospermine
pdb|2CBU|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Castanospermine
pdb|2CBV|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Calystegine B2
pdb|2CBV|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Calystegine B2
pdb|2CES|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Glucoimidazole
pdb|2CES|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Glucoimidazole
pdb|2CET|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenethyl-Substituted Glucoimidazole
pdb|2CET|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenethyl-Substituted Glucoimidazole
pdb|2J77|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Deoxynojirimycin
pdb|2J77|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Deoxynojirimycin
pdb|2J78|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Hydroximolactam
pdb|2J78|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Hydroximolactam
pdb|2J79|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Galacto-Hydroximolactam
pdb|2J79|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Galacto-Hydroximolactam
pdb|2J7B|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Tetrazole
pdb|2J7B|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Gluco-Tetrazole
pdb|2J7C|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenylaminomethyl-Derived Glucoimidazole
pdb|2J7C|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Phenylaminomethyl-Derived Glucoimidazole
pdb|2J7D|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Methoxycarbonyl-substituted Glucoimidazole
pdb|2J7D|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Methoxycarbonyl-substituted Glucoimidazole
pdb|2J7E|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Methyl Acetate-Substituted Glucoimidazole
pdb|2J7E|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Methyl Acetate-Substituted Glucoimidazole
pdb|2J7F|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Carboxylate-substituted Glucoimidazole
pdb|2J7F|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Carboxylate-substituted Glucoimidazole
pdb|2J7G|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Methyl Acetic Acid-substituted Glucoimidazole
pdb|2J7G|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Methyl Acetic Acid-substituted Glucoimidazole
pdb|2J7H|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Azafagomine
pdb|2J7H|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Azafagomine
pdb|2J75|A Chain A, Beta-glucosidase From Thermotoga Maritima In Complex With
Noeuromycin
pdb|2J75|B Chain B, Beta-glucosidase From Thermotoga Maritima In Complex With
Noeuromycin
pdb|2JAL|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
Cyclophellitol
pdb|2JAL|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
Cyclophellitol
pdb|2VRJ|A Chain A, Beta-Glucosidase From Thermotoga Maritima In Complex With
N- Octyl-5-Deoxy-6-Oxa-N-(Thio)carbamoylcalystegine
pdb|2VRJ|B Chain B, Beta-Glucosidase From Thermotoga Maritima In Complex With
N- Octyl-5-Deoxy-6-Oxa-N-(Thio)carbamoylcalystegine
pdb|2WBG|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WBG|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With
3-Imino-2-Oxa-(+)-Castanospermine
pdb|2WC3|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC3|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Oxa-(+)-8-Epi-
Castanospermine
pdb|2WC4|A Chain A, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|B Chain B, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|C Chain C, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
pdb|2WC4|D Chain D, Structure Of Family 1 Beta-Glucosidase From Thermotoga
Maritima In Complex With 3-Imino-2-Thia-(+)-
Castanospermine
Length = 468
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 513 SAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELF 572
+ S QIE SP + +G S+W G+ + V C+ R+ + +L
Sbjct: 37 ATASYQIEGSP--LADGAGMSIWHTFSHTPGNVKNGDTGDVACDHYNRWKEDIEIIEKLG 94
Query: 573 VKLY----NWNKVELQPCGLINCGNSCYANVVLQCL---AFTPPLTAY 613
VK Y +W ++ + G +N + N ++ L TP +T Y
Sbjct: 95 VKAYRFSISWPRILPEGTGRVNQKGLDFYNRIIDTLLEKGITPFVTIY 142
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 74 QCAVCFSPT--TTRCARCKAVRYCSGKCQIVHWRQGHKDEC 112
C CF+ ++C RCK YC +CQ W HK EC
Sbjct: 51 HCECCFARKEGLSKCGRCKQAFYCDVECQKEDW-PLHKLEC 90
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 644 GKSPLSPIGILSRLQSIGSQLGNGREEDAHEF 675
GKS L I RL IG++LG G E D F
Sbjct: 61 GKSALDENAIADRLADIGARLGGGAEADRASF 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,981,835
Number of Sequences: 62578
Number of extensions: 734717
Number of successful extensions: 1378
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 46
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)