Query 003615
Match_columns 807
No_of_seqs 550 out of 2599
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0944 Ubiquitin-specific pro 100.0 4.5E-52 9.8E-57 466.1 12.3 289 493-807 212-531 (763)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 4E-46 8.8E-51 415.2 13.8 232 563-799 88-320 (545)
3 cd02660 Peptidase_C19D A subfa 100.0 1.5E-39 3.3E-44 352.8 21.9 218 586-806 1-237 (328)
4 cd02663 Peptidase_C19G A subfa 100.0 2.8E-39 6E-44 348.5 20.1 193 587-801 1-203 (300)
5 cd02658 Peptidase_C19B A subfa 100.0 2.9E-39 6.4E-44 348.7 20.0 206 587-807 1-237 (311)
6 cd02671 Peptidase_C19O A subfa 100.0 6.9E-39 1.5E-43 351.1 20.8 196 580-801 19-236 (332)
7 cd02668 Peptidase_C19L A subfa 100.0 1.6E-38 3.4E-43 346.2 21.7 207 587-806 1-219 (324)
8 cd02669 Peptidase_C19M A subfa 100.0 1.4E-38 3E-43 360.8 20.6 272 493-803 43-349 (440)
9 cd02661 Peptidase_C19E A subfa 100.0 6.7E-38 1.4E-42 334.4 21.4 215 585-800 1-217 (304)
10 COG5207 UBP14 Isopeptidase T [ 100.0 1.6E-38 3.6E-43 346.8 12.1 288 493-806 205-518 (749)
11 cd02664 Peptidase_C19H A subfa 100.0 4.1E-37 8.9E-42 335.9 18.0 188 587-801 1-190 (327)
12 cd02657 Peptidase_C19A A subfa 100.0 1.4E-36 3.1E-41 326.8 19.3 203 587-803 1-213 (305)
13 cd02667 Peptidase_C19K A subfa 100.0 2.8E-36 6E-41 322.2 16.2 166 587-806 1-170 (279)
14 cd02659 peptidase_C19C A subfa 100.0 2.2E-35 4.8E-40 321.1 19.5 205 584-800 1-206 (334)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 1.2E-35 2.6E-40 309.9 12.2 225 582-806 68-325 (415)
16 COG5560 UBP12 Ubiquitin C-term 100.0 6.6E-35 1.4E-39 325.7 9.6 159 583-741 263-449 (823)
17 cd02662 Peptidase_C19F A subfa 100.0 1.9E-31 4.2E-36 279.4 14.4 141 587-806 1-147 (240)
18 KOG1868 Ubiquitin C-terminal h 100.0 1.2E-29 2.7E-34 294.3 6.7 224 580-803 296-558 (653)
19 cd02666 Peptidase_C19J A subfa 100.0 8.4E-29 1.8E-33 272.4 11.5 180 585-795 1-216 (343)
20 cd02674 Peptidase_C19R A subfa 100.0 1.6E-28 3.5E-33 252.9 11.8 140 587-806 1-145 (230)
21 cd02673 Peptidase_C19Q A subfa 99.9 1.2E-26 2.7E-31 244.5 12.9 158 588-800 2-160 (245)
22 KOG1866 Ubiquitin carboxyl-ter 99.9 1E-27 2.2E-32 271.8 4.2 215 580-806 90-309 (944)
23 COG5077 Ubiquitin carboxyl-ter 99.9 4.1E-27 8.9E-32 266.9 3.1 205 580-800 188-392 (1089)
24 KOG1863 Ubiquitin carboxyl-ter 99.9 5.7E-26 1.2E-30 280.8 9.4 217 576-806 161-380 (1093)
25 PF00443 UCH: Ubiquitin carbox 99.9 2.3E-24 5.1E-29 222.3 13.2 163 585-800 1-172 (269)
26 KOG1867 Ubiquitin-specific pro 99.9 4.8E-24 1E-28 243.4 11.0 219 581-800 157-389 (492)
27 cd02257 Peptidase_C19 Peptidas 99.9 1.9E-23 4.1E-28 211.7 13.6 154 587-806 1-160 (255)
28 cd02665 Peptidase_C19I A subfa 99.9 1.2E-23 2.7E-28 219.2 10.4 148 587-806 1-148 (228)
29 KOG1873 Ubiquitin-specific pro 99.9 1.7E-22 3.7E-27 230.4 10.0 158 582-740 202-399 (877)
30 KOG2026 Spindle pole body prot 99.9 2.8E-21 6E-26 207.8 18.1 274 509-804 55-352 (442)
31 PF13423 UCH_1: Ubiquitin carb 99.9 7.7E-21 1.7E-25 205.0 16.6 210 586-802 1-218 (295)
32 KOG1870 Ubiquitin C-terminal h 99.9 4.1E-22 8.8E-27 241.3 7.5 162 580-741 241-427 (842)
33 KOG4598 Putative ubiquitin-spe 99.8 6.6E-23 1.4E-27 230.5 -0.4 181 582-800 84-269 (1203)
34 cd02672 Peptidase_C19P A subfa 99.8 5.2E-20 1.1E-24 196.7 13.5 154 582-800 12-173 (268)
35 KOG1864 Ubiquitin-specific pro 99.8 1.4E-19 3.1E-24 210.0 7.4 219 583-801 230-477 (587)
36 KOG1871 Ubiquitin-specific pro 99.7 5.6E-17 1.2E-21 175.5 8.0 214 582-800 25-316 (420)
37 KOG1872 Ubiquitin-specific pro 99.5 6E-15 1.3E-19 163.5 3.2 208 582-801 102-320 (473)
38 cd02670 Peptidase_C19N A subfa 99.4 9.9E-13 2.2E-17 138.7 7.3 114 587-806 1-118 (241)
39 PF01753 zf-MYND: MYND finger; 98.8 8.9E-10 1.9E-14 83.4 1.6 37 75-112 1-37 (37)
40 KOG1275 PAB-dependent poly(A) 98.5 1.3E-07 2.8E-12 111.8 7.3 208 584-799 498-735 (1118)
41 KOG1710 MYND Zn-finger and ank 98.4 1.7E-08 3.8E-13 106.6 -2.2 48 68-116 315-363 (396)
42 KOG1864 Ubiquitin-specific pro 97.6 4.1E-05 8.9E-10 90.4 3.6 100 588-687 34-152 (587)
43 KOG3612 PHD Zn-finger protein 97.4 0.00011 2.3E-09 83.9 4.1 45 71-118 526-570 (588)
44 KOG2061 Uncharacterized MYND Z 93.1 0.045 9.7E-07 60.9 1.8 50 72-121 136-185 (362)
45 PLN03158 methionine aminopepti 92.3 0.066 1.4E-06 61.1 1.8 42 70-112 7-55 (396)
46 PF15499 Peptidase_C98: Ubiqui 87.7 0.2 4.3E-06 53.6 0.6 77 703-794 120-198 (275)
47 PF13824 zf-Mss51: Zinc-finger 84.0 0.31 6.8E-06 40.4 -0.1 45 74-119 1-49 (55)
48 PF04438 zf-HIT: HIT zinc fing 80.5 0.97 2.1E-05 33.0 1.4 28 73-101 3-30 (30)
49 PF05408 Peptidase_C28: Foot-a 74.7 1.4 3E-05 45.1 1.1 25 582-606 30-54 (193)
50 PF08715 Viral_protease: Papai 73.4 8 0.00017 43.2 6.7 75 586-684 103-178 (320)
51 KOG3362 Predicted BBOX Zn-fing 67.1 2.3 5E-05 41.8 0.7 35 70-105 116-150 (156)
52 COG3478 Predicted nucleic-acid 58.4 7.6 0.00016 33.4 2.2 36 764-799 3-40 (68)
53 PRK12495 hypothetical protein; 54.1 15 0.00032 38.9 3.9 42 26-83 12-53 (226)
54 PF10013 DUF2256: Uncharacteri 54.0 4.4 9.5E-05 31.9 0.1 31 71-101 7-40 (42)
55 KOG2857 Predicted MYND Zn-fing 50.8 7.1 0.00015 38.4 1.0 37 72-114 5-44 (157)
56 KOG3556 Familial cylindromatos 49.1 14 0.00031 43.3 3.1 24 585-608 368-391 (724)
57 PRK01343 zinc-binding protein; 46.7 14 0.00031 31.1 2.0 28 71-103 8-35 (57)
58 KOG2738 Putative methionine am 46.0 25 0.00054 38.9 4.2 43 71-114 5-54 (369)
59 PF14353 CpXC: CpXC protein 44.2 23 0.00051 33.8 3.4 49 717-776 1-49 (128)
60 PF09889 DUF2116: Uncharacteri 43.5 13 0.00028 31.5 1.3 32 72-110 3-34 (59)
61 COG3114 CcmD Heme exporter pro 37.0 75 0.0016 27.5 4.8 44 5-48 13-56 (67)
62 PF10367 Vps39_2: Vacuolar sor 35.7 1.2E+02 0.0025 27.5 6.5 15 67-81 73-87 (109)
63 KOG4317 Predicted Zn-finger pr 32.0 19 0.00041 39.9 0.7 36 73-114 8-44 (383)
64 PF09855 DUF2082: Nucleic-acid 30.2 43 0.00094 28.9 2.4 34 766-799 1-36 (64)
65 COG1997 RPL43A Ribosomal prote 29.0 77 0.0017 29.0 3.9 49 13-92 7-62 (89)
66 COG4338 Uncharacterized protei 27.9 8.4 0.00018 31.2 -2.0 29 72-100 12-43 (54)
67 PF12855 Ecl1: Life-span regul 27.7 26 0.00057 27.8 0.7 31 72-105 6-36 (43)
68 PF09297 zf-NADH-PPase: NADH p 26.4 38 0.00083 24.7 1.3 23 72-94 3-32 (32)
69 PLN03144 Carbon catabolite rep 23.8 40 0.00086 41.0 1.5 39 73-112 60-109 (606)
70 PF07271 Cytadhesin_P30: Cytad 22.9 1.3E+02 0.0028 33.0 4.9 41 3-46 73-114 (279)
71 PRK03824 hypA hydrogenase nick 21.0 1.6E+02 0.0035 28.8 4.9 50 713-774 66-116 (135)
No 1
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-52 Score=466.13 Aligned_cols=289 Identities=19% Similarity=0.279 Sum_probs=257.4
Q ss_pred cCCCccccccccccCCcccCccceeeccccCCCCCCCccchhhHhhhcccCCchhhhhhhcCccccCccc-CCccccHHH
Q 003615 493 VGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYS-DKGLFSYEL 571 (807)
Q Consensus 493 ~~~h~~~~~~~~~~~~~~~s~a~l~~Ite~~~~G~~dly~~vle~~d~v~dp~l~khL~~~Gi~I~~~~k-eksL~~~E~ 571 (807)
||+|+++||++++ +|+ +++|++|+ ++| .|+|.|. ++++++||+|.+||.||||++..+.+ +|++.+++.
T Consensus 212 gNgHA~~HYr~tg---hPL-aVKLgsIs---~dg-~DvycY~--cDd~v~dPnl~~hl~hfGId~~~m~kteksl~elel 281 (763)
T KOG0944|consen 212 GNGHALSHYRETG---HPL-AVKLGSIS---PDG-ADVYCYD--CDDEVRDPNLESHLSHFGIDMAKMDKTEKSLVELEL 281 (763)
T ss_pred CCcchHHhhhhcC---Cce-EEEecccC---CCc-cceeeec--ccccccCccHHHHHHhcCccHHHhccchhHHHHHHH
Confidence 6899999999999 999 89999998 899 9999987 78999999999999999999999999 999998865
Q ss_pred Hh-hhcccCCcc-----------ccccccccCCCccchHHHHHHHhcChhHHHHHhhccc--ccccccccchHHHHHHHH
Q 003615 572 FV-KLYNWNKVE-----------LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLH--SKECAKKDWCFTCELENL 637 (807)
Q Consensus 572 ~~-kl~~~~~~~-----------lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~--~~~~~~~~~~~l~qL~kL 637 (807)
-. ++|+|...+ .|++||+|+||+||||||||+|+++|.|..+++...+ ...+.++..+|.|||.||
T Consensus 282 ~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl 361 (763)
T KOG0944|consen 282 DQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKL 361 (763)
T ss_pred HhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHH
Confidence 32 677776221 3679999999999999999999999999999887522 234458899999999999
Q ss_pred HHHHhCC-----------CCCCCHHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccc
Q 003615 638 ILRAKDG-----------KSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLI 706 (807)
Q Consensus 638 f~~l~s~-----------~~~IsP~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI 706 (807)
...|.++ ++.|+|.+|+..+++.++.|++++||||+|||+|||+.|.+..... ...+
T Consensus 362 ~~gm~sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~------------~~np 429 (763)
T KOG0944|consen 362 LHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS------------LPNP 429 (763)
T ss_pred HHHhhcCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc------------CCCH
Confidence 9999843 3689999999999999999999999999999999999998632111 1348
Q ss_pred ccccceEEEEEEEECCCCCceeeeeeceeEEeecCC-----CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEE
Q 003615 707 GLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG-----DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKL 781 (807)
Q Consensus 707 ~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~-----~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~ 781 (807)
.++|.|.++.+++|..|++++++++..+.+.|+||. +.+++.+||+.||.| .+++ |+|+.||.+..|.|++
T Consensus 430 td~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d---f~s~ac~~K~~a~kt~ 505 (763)
T KOG0944|consen 430 TDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD---FWSTACGEKKGATKTT 505 (763)
T ss_pred HHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---hhhHhhcCcccccccc
Confidence 999999999999999999999999999999999985 347999999999999 5555 9999999999999999
Q ss_pred EeccccceeEEEEeeeeeCCCcccCC
Q 003615 782 TIVEAPNILTIALKRFQVFSPLPISF 807 (807)
Q Consensus 782 ~I~~lP~~LIIqLKRF~~~~wvP~k~ 807 (807)
+|++||+|||||++||.+.+|+|+|+
T Consensus 506 ~~ksfP~yLiiqv~rf~~~dw~pkKl 531 (763)
T KOG0944|consen 506 RFKSFPDYLIIQVGRFTLQDWVPKKL 531 (763)
T ss_pred ccccCCceEEEEeeEEEecCceeeee
Confidence 99999999999999999999999996
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-46 Score=415.24 Aligned_cols=232 Identities=47% Similarity=0.852 Sum_probs=217.6
Q ss_pred CCccccHHHHhhhcccCCccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHh
Q 003615 563 DKGLFSYELFVKLYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK 642 (807)
Q Consensus 563 eksL~~~E~~~kl~~~~~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~ 642 (807)
.+.|+|+|.+. +.|.+....++||.|+|||||+|||||||.++|||.+||+...|...|....+|++|+|+.++....
T Consensus 88 ~k~Lfp~e~~~--~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~ 165 (545)
T KOG1865|consen 88 AKVLFPYEKLP--LSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL 165 (545)
T ss_pred chhccccceec--ccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence 47899998777 6888889999999999999999999999999999999999999999999999999999999997776
Q ss_pred CCC-CCCCHHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEEC
Q 003615 643 DGK-SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCT 721 (807)
Q Consensus 643 s~~-~~IsP~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~ 721 (807)
... .+|+|..|+..|+.|...|+.|+|+||||||+++||.|+..|+ .+.....+..+++++|.++|||.++++|+|.
T Consensus 166 ~~~g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL--~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~ 243 (545)
T KOG1865|consen 166 HNPGHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL--PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCL 243 (545)
T ss_pred cCCCCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc--CCCccCCcccccceehhhhhccchhhceecc
Confidence 555 4999999999999999999999999999999999999999987 3334455666889999999999999999999
Q ss_pred CCCCceeeeeeceeEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeee
Q 003615 722 KCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQV 799 (807)
Q Consensus 722 ~C~~vS~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~ 799 (807)
.|++++.++|++++|+|+|. ...+|+++|+.|+++|.|+|+|+|+|++|++++.|.|++.|.++|+||+||||||++
T Consensus 244 ~C~~vS~tyE~~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~ 320 (545)
T KOG1865|consen 244 HCKGVSDTYEPYLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN 320 (545)
T ss_pred cCCCcccccccccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc
Confidence 99999999999999999999 679999999999999999999999999999999999999999999999999999997
No 3
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-39 Score=352.81 Aligned_cols=218 Identities=30% Similarity=0.543 Sum_probs=189.7
Q ss_pred cccccCCCccchHHHHHHHhcChhHHHHHhhccccc--ccccccchHHHHHHHHHHHHhC--CCCCCCHHHHHHHHHhhc
Q 003615 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK--ECAKKDWCFTCELENLILRAKD--GKSPLSPIGILSRLQSIG 661 (807)
Q Consensus 586 ~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~--~~~~~~~~~l~qL~kLf~~l~s--~~~~IsP~~fl~~L~k~~ 661 (807)
+||.|+|||||||||||+|+++|+||++++...+.. ....+..|+.++|++||..++. ....+.|..|+..++...
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~ 80 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHS 80 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhc
Confidence 699999999999999999999999999999865543 1225677999999999999953 346889999999999888
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecC
Q 003615 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (807)
Q Consensus 662 ~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip 741 (807)
+.|..+.||||+|||.+|||.|++++...... ........++|.++|+|++.++++|..|++++.+.|+|++|+|+|+
T Consensus 81 ~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~ 158 (328)
T cd02660 81 RNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE--ANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIP 158 (328)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHhhccccc--ccccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeecc
Confidence 89999999999999999999999977543221 1111234578999999999999999999999999999999999998
Q ss_pred CC--------------CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC-CcccC
Q 003615 742 GD--------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS-PLPIS 806 (807)
Q Consensus 742 ~~--------------~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~-wvP~k 806 (807)
.. ..+|++||+.|+.+|.+++.| |+|++|+.++.+.|+..|.++|+||+|||+||.++. |.+.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K 237 (328)
T cd02660 159 NKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRK 237 (328)
T ss_pred ccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcC
Confidence 64 289999999999999999877 999999999999999999999999999999999976 76655
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-39 Score=348.47 Aligned_cols=193 Identities=33% Similarity=0.582 Sum_probs=172.9
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHhhccc
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK---SPLSPIGILSRLQSIGSQ 663 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~---~~IsP~~fl~~L~k~~~~ 663 (807)
||.|+|||||||||||+|++ .+++++|+.||..|+... ..++|..|+.+++...+.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~ 59 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENEL 59 (300)
T ss_pred CccCCCcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCC
Confidence 99999999999999999987 468899999999998643 568999999999999999
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHhhhcCCC-------CCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeE
Q 003615 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA-------SGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (807)
Q Consensus 664 F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~-------~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~L 736 (807)
|..++||||+|||++|||.|++++........ ........++|.++|+|+++++++|..|++++.+.|+|++|
T Consensus 60 f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~L 139 (300)
T cd02663 60 FDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDL 139 (300)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEe
Confidence 99999999999999999999998765432111 11122456789999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC
Q 003615 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS 801 (807)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~ 801 (807)
+|+|++. .+|++||+.|+++|.++|+|+|+|++|++++.|.|+..|.++|+||+|||+||.++.
T Consensus 140 sl~i~~~-~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~ 203 (300)
T cd02663 140 SIDVEQN-TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDE 203 (300)
T ss_pred ccCCCCc-CCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeec
Confidence 9999974 899999999999999999999999999999999999999999999999999999865
No 5
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-39 Score=348.75 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=181.1
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhccccc--ccccccchHHHHHHHHHHHHhCC---------------CCCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSK--ECAKKDWCFTCELENLILRAKDG---------------KSPLS 649 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~--~~~~~~~~~l~qL~kLf~~l~s~---------------~~~Is 649 (807)
||.|+|||||||||||+|+++|+||++|+...+.. ....+..+++++|++|+..|+.+ +.++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 99999999999999999999999999998633222 22356778999999999988753 34689
Q ss_pred HHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceee
Q 003615 650 PIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSER 729 (807)
Q Consensus 650 P~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~ 729 (807)
|..|+..++..++.|..++||||+|||++||+.|++++... ....+.++|+|.++++++|..|+.++.+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~-----------~~~~~~~~f~~~~~~~i~C~~C~~~s~~ 149 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN-----------LGLNPNDLFKFMIEDRLECLSCKKVKYT 149 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc-----------ccCCchhheEEEeeEEEEcCCCCCEEEe
Confidence 99999999999999999999999999999999999876421 1234789999999999999999999999
Q ss_pred eeeceeEEeecCCC-------------CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEee
Q 003615 730 QERMMDLTVEIEGD-------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKR 796 (807)
Q Consensus 730 ~E~f~~LsL~Ip~~-------------~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKR 796 (807)
.|+|++|+|+++.. ..+|++||+.|+.+|.++ ++|++|++++.|.|+.+|.++|+||+|||+|
T Consensus 150 ~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkR 225 (311)
T cd02658 150 SELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKR 225 (311)
T ss_pred ecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEE
Confidence 99999999999853 249999999999999997 6899999999999999999999999999999
Q ss_pred eee-CCCcccCC
Q 003615 797 FQV-FSPLPISF 807 (807)
Q Consensus 797 F~~-~~wvP~k~ 807 (807)
|.+ .+|.|+|+
T Consensus 226 F~~~~~~~~~Ki 237 (311)
T cd02658 226 FQLLENWVPKKL 237 (311)
T ss_pred EEecCCCceEee
Confidence 999 68988774
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-39 Score=351.06 Aligned_cols=196 Identities=28% Similarity=0.466 Sum_probs=168.4
Q ss_pred CccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHH---HHh-CCCCCCCHHHHHH
Q 003615 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLIL---RAK-DGKSPLSPIGILS 655 (807)
Q Consensus 580 ~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~---~l~-s~~~~IsP~~fl~ 655 (807)
+...+++||+|+|||||||||||+|+++|+||+.++...... ....+++.++. .++ .....+.|..|+.
T Consensus 19 ~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------~~~~~~q~~~~~l~~~~~~~~~~~~P~~~~~ 91 (332)
T cd02671 19 ENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------SSVEQLQSSFLLNPEKYNDELANQAPRRLLN 91 (332)
T ss_pred ccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------CcHHHHHHHHHHHHHHHhhcccccCHHHHHH
Confidence 445688999999999999999999999999999986543111 11223333332 222 2234567999999
Q ss_pred HHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeecee
Q 003615 656 RLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (807)
Q Consensus 656 ~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~ 735 (807)
.+++.++.|..+.||||+|||++|||.|+. ++.++|+|+++++++|..|++++.+.|+|++
T Consensus 92 ~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~-------------------~i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ 152 (332)
T cd02671 92 ALREVNPMYEGYLQHDAQEVLQCILGNIQE-------------------LVEKDFQGQLVLRTRCLECETFTERREDFQD 152 (332)
T ss_pred HHHHhccccCCccccCHHHHHHHHHHHHHH-------------------HHHhhhceEEEEEEEeCCCCCeeceecccEE
Confidence 999999999999999999999999999984 3788999999999999999999999999999
Q ss_pred EEeecCCCC------------------CCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeee
Q 003615 736 LTVEIEGDI------------------GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRF 797 (807)
Q Consensus 736 LsL~Ip~~~------------------~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF 797 (807)
|+|+|++.. .+|++||+.|+++|.++|+|+|+|++|++++.|.|+..|.++|+||+||||||
T Consensus 153 lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF 232 (332)
T cd02671 153 ISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCF 232 (332)
T ss_pred EEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeee
Confidence 999998642 58999999999999999999999999999999999999999999999999999
Q ss_pred eeCC
Q 003615 798 QVFS 801 (807)
Q Consensus 798 ~~~~ 801 (807)
.+++
T Consensus 233 ~~~~ 236 (332)
T cd02671 233 AANG 236 (332)
T ss_pred cccc
Confidence 9754
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-38 Score=346.16 Aligned_cols=207 Identities=23% Similarity=0.431 Sum_probs=179.2
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhccccccc---------ccccchHHHHHHHHHHHHhCC-CCCCCHHHHHHH
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC---------AKKDWCFTCELENLILRAKDG-KSPLSPIGILSR 656 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~---------~~~~~~~l~qL~kLf~~l~s~-~~~IsP~~fl~~ 656 (807)
||.|+||||||||+||+|+++|+||++++........ .....+++++|++||..|+.+ ..+++|..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 8999999999999999999999999999875432110 012368999999999999954 568999999988
Q ss_pred HHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeE
Q 003615 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (807)
Q Consensus 657 L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~L 736 (807)
++ |..++||||+|||.+|||.|++++..... ....+++.++|+|++.++++|..|+..+.+.|+|+.|
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~-------~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l 148 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN-------PDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYEL 148 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC-------CcccchhhhhcceEEEEEEEeCCCCCccccccccEEE
Confidence 83 67889999999999999999987653211 1235689999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC--CCcccC
Q 003615 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF--SPLPIS 806 (807)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~--~wvP~k 806 (807)
+|+|++. .+|++||+.|+.+|.++|+|+|+|++|++++.|.|+..|.++|+||+|||+||.++ .|.++|
T Consensus 149 ~l~i~~~-~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~K 219 (324)
T cd02668 149 ELQLKGH-KTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKK 219 (324)
T ss_pred EEEeccc-CCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCccee
Confidence 9999964 79999999999999999999999999999999999999999999999999999985 354544
No 8
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-38 Score=360.75 Aligned_cols=272 Identities=17% Similarity=0.183 Sum_probs=210.7
Q ss_pred cCCCccccccccccCCcccCccceeeccccCCCCCCCccchhhHhhhcccCCchhhhhhhcCccccCcccCCccccHHHH
Q 003615 493 VGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELF 572 (807)
Q Consensus 493 ~~~h~~~~~~~~~~~~~~~s~a~l~~Ite~~~~G~~dly~~vle~~d~v~dp~l~khL~~~Gi~I~~~~keksL~~~E~~ 572 (807)
++.|+..|+++++ ++. ++.|++ .++|. ++++++|.||.|..++. ++ .++..++.+..++.+
T Consensus 43 ~~~ha~~H~~~~~---H~~-~v~l~t---------~~~yc--~~~~~~v~d~~l~~i~~--~~--~~~~~~~~i~~~~~~ 103 (440)
T cd02669 43 KGSHAYTHSLEDN---HHV-FLNLET---------LKFYC--LPDNYEIIDSSLDDIKY--VL--NPTYTKEQISDLDRD 103 (440)
T ss_pred CCcHHHHHhhccC---CCE-EEECCC---------CCEEE--eCCCCEEeCccHHHHHH--Hh--cCCCCHHHHHHhhhc
Confidence 4689999998877 554 333332 56777 55899999999988773 22 333445555555544
Q ss_pred hh---hcccCCccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCC---CC
Q 003615 573 VK---LYNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG---KS 646 (807)
Q Consensus 573 ~k---l~~~~~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~---~~ 646 (807)
.+ .........|++||.|+|||||||||||+|+++|+||++|+...+.........++.++|..|+..+|+. +.
T Consensus 104 ~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~~~~~ 183 (440)
T cd02669 104 PKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPRNFKG 183 (440)
T ss_pred cccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccccCCC
Confidence 33 1222234458899999999999999999999999999999986553322234568999999999999965 47
Q ss_pred CCCHHHHHHHHHhhc-ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCC-
Q 003615 647 PLSPIGILSRLQSIG-SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCH- 724 (807)
Q Consensus 647 ~IsP~~fl~~L~k~~-~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~- 724 (807)
+++|.+|+..++... +.|..++||||+|||++|||.||+++... .....++|.++|+|++++.++|..|.
T Consensus 184 ~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~--------~~~~~~ii~~~F~G~l~~~~~c~~~~~ 255 (440)
T cd02669 184 HVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGS--------KKPNSSIIHDCFQGKVQIETQKIKPHA 255 (440)
T ss_pred ccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccC--------CCCCCCcceeccCceEEEEEEeecccc
Confidence 899999999998754 57999999999999999999999876431 12456899999999999999987654
Q ss_pred --------------CceeeeeeceeEEeecCCCC-------------CCHHHHHHhhhcceeeCCCCceecCCCCceeeE
Q 003615 725 --------------GKSERQERMMDLTVEIEGDI-------------GNLEEALRRYTGTEILDGENKYKCDRCKSYEKA 777 (807)
Q Consensus 725 --------------~vS~~~E~f~~LsL~Ip~~~-------------~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A 777 (807)
..+.+.++|++|+|+||... .+|+++|+. |.|+.|.....+
T Consensus 256 ~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k------------y~~~~c~~~~~a 323 (440)
T cd02669 256 EEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK------------YDGKTETELKDS 323 (440)
T ss_pred cccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh------------cCCccceecccc
Confidence 34667899999999998641 356666643 778888888899
Q ss_pred EEEEEeccccceeEEEEeeeeeCCCc
Q 003615 778 KKKLTIVEAPNILTIALKRFQVFSPL 803 (807)
Q Consensus 778 ~K~~~I~~lP~~LIIqLKRF~~~~wv 803 (807)
.|+++|.++|+||+||||||+++.+.
T Consensus 324 ~k~~~I~~LP~vLiihLKRF~~~~~~ 349 (440)
T cd02669 324 LKRYLISRLPKYLIFHIKRFSKNNFF 349 (440)
T ss_pred eEEEEEeeCCcEEEEEEecccCCCCc
Confidence 99999999999999999999987643
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-38 Score=334.37 Aligned_cols=215 Identities=47% Similarity=0.832 Sum_probs=190.3
Q ss_pred ccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHhhccc
Q 003615 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK-DGKSPLSPIGILSRLQSIGSQ 663 (807)
Q Consensus 585 p~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~-s~~~~IsP~~fl~~L~k~~~~ 663 (807)
|+||.|+|||||||||||+|+++|+||++++...+...+.....+++++|+.++..++ ..+..+.|..|...++...+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~ 80 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQISKH 80 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHHh
Confidence 6899999999999999999999999999998765554444567799999999997776 567889999999999999999
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCC
Q 003615 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA-SGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG 742 (807)
Q Consensus 664 F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~-~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~ 742 (807)
|..+.||||+|||.+|||.|++++........ ........+++.++|+|++.++++|..|+..+.+.|.|+.|+|+|++
T Consensus 81 f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~ 160 (304)
T cd02661 81 FRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKG 160 (304)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCC
Confidence 99999999999999999999987654432111 11223456789999999999999999999999999999999999997
Q ss_pred CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 743 DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 743 ~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
. .+|+++|+.|+.+|.++++++|+|++|++++.+.|+..|.++|+||+|||+||.+.
T Consensus 161 ~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~ 217 (304)
T cd02661 161 A-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF 217 (304)
T ss_pred C-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC
Confidence 5 79999999999999999999999999999999999999999999999999999986
No 10
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=346.84 Aligned_cols=288 Identities=19% Similarity=0.275 Sum_probs=242.8
Q ss_pred cCCCccccccccccCCcccCccceeeccccCCCCCCCccchhhHhhhccc-CC--chhhhhhhcCccccCccc-CCcccc
Q 003615 493 VGMPSVPSVRSERFDNVQRSSAMSAQIENSPSNVGNGLKTSLWKAVDQFR-GS--KSSKQCLSVGCETAGRYS-DKGLFS 568 (807)
Q Consensus 493 ~~~h~~~~~~~~~~~~~~~s~a~l~~Ite~~~~G~~dly~~vle~~d~v~-dp--~l~khL~~~Gi~I~~~~k-eksL~~ 568 (807)
|++|+..||.++. +|+ +++|.+|. .|..|+|.|. |+++.+ ++ ++..|+..|||+|+...+ +|++..
T Consensus 205 GngHAlsHY~~t~---Hpl-avkl~Sls----~~~~diyCY~--CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~ 274 (749)
T COG5207 205 GNGHALSHYEETQ---HPL-AVKLPSLS----KEDCDIYCYL--CDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRK 274 (749)
T ss_pred CCcchhhhhhccC---Cce-EEEccccc----cccccEEEEe--cCcccccCCcccccceeeeeccchhhccchHHHHHH
Confidence 6799999999998 888 78888874 7889999988 667743 44 577889999999999988 899987
Q ss_pred HHHHhhhcccCC----------ccc---cccccccCCCccchHHHHHHHhcChhHHHHHhhccc--ccccccccchHHHH
Q 003615 569 YELFVKLYNWNK----------VEL---QPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLH--SKECAKKDWCFTCE 633 (807)
Q Consensus 569 ~E~~~kl~~~~~----------~~l---gp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~--~~~~~~~~~~~l~q 633 (807)
+..-. ..+|+- .+. .++||+|+||+||+|||||.|+....+...+....+ .-.+..+..+|.||
T Consensus 275 lq~eq-n~nw~F~~~~~~~~sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQ 353 (749)
T COG5207 275 LQSEQ-NANWEFLEKKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQ 353 (749)
T ss_pred HHHhh-hcCcchhccccCchhhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHH
Confidence 73211 123431 111 259999999999999999999999988877755333 33456889999999
Q ss_pred HHHHHHHHhCC-----CCCCCHHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccccc
Q 003615 634 LENLILRAKDG-----KSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGL 708 (807)
Q Consensus 634 L~kLf~~l~s~-----~~~IsP~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~ 708 (807)
|-+|...|... .+.|.|.+|+..+++.++.|+..+||||+|||+|||+.|.+-... -..+.|.+
T Consensus 354 l~kll~~mk~~p~~~y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S-----------~~~~~It~ 422 (749)
T COG5207 354 LMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS-----------YLIPPITS 422 (749)
T ss_pred HHHHHhhccCCCCccccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch-----------hcCCCcch
Confidence 99999998854 378999999999999999999999999999999999999852211 22345789
Q ss_pred ccceEEEEEEEECCCCCceeeeeeceeEEeecCC--CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccc
Q 003615 709 TFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG--DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEA 786 (807)
Q Consensus 709 lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~--~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~l 786 (807)
+|.+.++.++.|..|+.+++.+++...+.+++.+ +.+++.++|+.||.+.+++ |.|++|+.+..|.++..|++|
T Consensus 423 lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~ksl 498 (749)
T COG5207 423 LFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSL 498 (749)
T ss_pred hhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhcc
Confidence 9999999999999999999999999998888865 3589999999999999998 999999999999999999999
Q ss_pred cceeEEEEeeeeeCCCcccC
Q 003615 787 PNILTIALKRFQVFSPLPIS 806 (807)
Q Consensus 787 P~~LIIqLKRF~~~~wvP~k 806 (807)
|+|||||..||...+|.-.|
T Consensus 499 Pk~LIlq~~R~~lqny~v~k 518 (749)
T COG5207 499 PKYLILQVGRYSLQNYKVEK 518 (749)
T ss_pred CceeEEecceeeccceeehh
Confidence 99999999999999998655
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-37 Score=335.89 Aligned_cols=188 Identities=31% Similarity=0.547 Sum_probs=167.1
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhC-CCCCCCHHH-HHHHHHhhcccC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKD-GKSPLSPIG-ILSRLQSIGSQL 664 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s-~~~~IsP~~-fl~~L~k~~~~F 664 (807)
||.|+||||||||+||+|+++|+||++++....... ....+++++|+.||..|.. .+.++.|.. |+..++ .+.|
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~--~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~~~f 76 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL--GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--PPWF 76 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc--CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--cccc
Confidence 899999999999999999999999999987654211 2345688899999987764 355667765 666653 5789
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCCCC
Q 003615 665 GNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDI 744 (807)
Q Consensus 665 ~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~~ 744 (807)
..++||||||||.+||+.|+ ++|.++|+|++.++++|..|+.++.+.|+|+.|+|+||
T Consensus 77 ~~~~QqDa~EFl~~lLd~l~-------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~--- 134 (327)
T cd02664 77 TPGSQQDCSEYLRYLLDRLH-------------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP--- 134 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHH-------------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC---
Confidence 99999999999999999998 24889999999999999999999999999999999998
Q ss_pred CCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC
Q 003615 745 GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS 801 (807)
Q Consensus 745 ~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~ 801 (807)
+|+++|+.|+.+|.++|+|+|+|++|++++.|.|+..|.++|+||+||||||.++.
T Consensus 135 -sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~ 190 (327)
T cd02664 135 -SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ 190 (327)
T ss_pred -CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcc
Confidence 89999999999999999999999999999999999999999999999999999754
No 12
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-36 Score=326.75 Aligned_cols=203 Identities=24% Similarity=0.303 Sum_probs=177.9
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccc-cccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKE-CAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLG 665 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~-~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~ 665 (807)
||.|+|||||||||||+|+++|+||++++....... ......+++++|++||..|+.....++|..|+..+++..+.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~f~ 80 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQFA 80 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcCcc
Confidence 899999999999999999999999999987654321 1235678999999999999988889999999999999888884
Q ss_pred ------CCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCC-CceeeeeeceeEEe
Q 003615 666 ------NGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCH-GKSERQERMMDLTV 738 (807)
Q Consensus 666 ------~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~-~vS~~~E~f~~LsL 738 (807)
.++||||+|||.+|||.|++++.. .....++|.++|+|++++.++|..|+ .++.+.|+|++|+|
T Consensus 81 ~~~~~~~~~QqDA~EFl~~lld~L~~~~~~---------~~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl 151 (305)
T cd02657 81 EKQNQGGYAQQDAEECWSQLLSVLSQKLPG---------AGSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQC 151 (305)
T ss_pred cccCCCCccccCHHHHHHHHHHHHHHHhcc---------cCCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEe
Confidence 459999999999999999987533 12345679999999999999999999 79999999999999
Q ss_pred ecCCC--CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCCCc
Q 003615 739 EIEGD--IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSPL 803 (807)
Q Consensus 739 ~Ip~~--~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~wv 803 (807)
+|++. ..+|++||+.++.++.. ..|+.|+....+.|+.+|.++|+||+||||||.++.+.
T Consensus 152 ~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~ 213 (305)
T cd02657 152 HISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDI 213 (305)
T ss_pred ecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCcccccc
Confidence 99975 46899999999987654 57999999999999999999999999999999987654
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-36 Score=322.19 Aligned_cols=166 Identities=36% Similarity=0.617 Sum_probs=153.4
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~ 666 (807)
||.|+|||||||||||+|+++|+||++++. +|..|+..++..++.|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~~~~f~~ 48 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRKAPQFKG 48 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHhhHhhcC
Confidence 999999999999999999999999999874 788899999988999999
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCC---C
Q 003615 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG---D 743 (807)
Q Consensus 667 ~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~---~ 743 (807)
++||||+|||++|||.|+ +++.++|+|+++++++|..|++++.+.|+|++|+|+++. .
T Consensus 49 ~~QqDA~Efl~~lld~l~-------------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~ 109 (279)
T cd02667 49 YQQQDSHELLRYLLDGLR-------------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKS 109 (279)
T ss_pred CchhhHHHHHHHHHHHHH-------------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCC
Confidence 999999999999999998 247899999999999999999999999999999999863 3
Q ss_pred CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC-CcccC
Q 003615 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS-PLPIS 806 (807)
Q Consensus 744 ~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~-wvP~k 806 (807)
..+|++||+.|+.+|.++|+|+|.|++|++ |.|+..|.++|+||+||||||.++. |.+.|
T Consensus 110 ~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~K 170 (279)
T cd02667 110 ECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRK 170 (279)
T ss_pred CCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCcee
Confidence 479999999999999999999999999988 8999999999999999999999864 45544
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.2e-35 Score=321.10 Aligned_cols=205 Identities=30% Similarity=0.434 Sum_probs=173.7
Q ss_pred cccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHhhcc
Q 003615 584 QPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK-SPLSPIGILSRLQSIGS 662 (807)
Q Consensus 584 gp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~-~~IsP~~fl~~L~k~~~ 662 (807)
|++||.|+||||||||+||+|+++|+||++++....... .....++.++|+.||..|+... ..+.|..+.........
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~-~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTED-DDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSFGWD 79 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCccc-CcccccHHHHHHHHHHHHHhCCccccCcchhheeccCCCC
Confidence 679999999999999999999999999999987532211 1456779999999999998654 34455444322222235
Q ss_pred cCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCC
Q 003615 663 QLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG 742 (807)
Q Consensus 663 ~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~ 742 (807)
.|..+.||||+|||.+||+.|++++... ...+++.++|+|++...++|..|+..+...++|+.|+|++++
T Consensus 80 ~~~~~~QqDa~Efl~~ll~~l~~~~~~~----------~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~ 149 (334)
T cd02659 80 SLNTFEQHDVQEFFRVLFDKLEEKLKGT----------GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG 149 (334)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhccC----------cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCC
Confidence 6889999999999999999999875421 233579999999999999999999999999999999999986
Q ss_pred CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 743 DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 743 ~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
..+|+++|+.|+.+|.++|+|+|+|++|++++.+.|+..|.++|+||+|||+||.++
T Consensus 150 -~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~ 206 (334)
T cd02659 150 -KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFD 206 (334)
T ss_pred -CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEc
Confidence 479999999999999999999999999999999999999999999999999999974
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=309.86 Aligned_cols=225 Identities=23% Similarity=0.360 Sum_probs=183.3
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhccc-----cccccc-ccchHHHHHHHHHHHHh-CCCCCCCHHHHH
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLH-----SKECAK-KDWCFTCELENLILRAK-DGKSPLSPIGIL 654 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~-----~~~~~~-~~~~~l~qL~kLf~~l~-s~~~~IsP~~fl 654 (807)
...|.||+|+|||||||++||||+.+.++...|+...+ .+.... +......+|.-|...+. .+...|+|+.|+
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF~ 147 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNFI 147 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHHH
Confidence 34689999999999999999999999999995544322 222222 23345556666655444 456779999999
Q ss_pred HHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCC-------------------------CCCCCCCcccccccc
Q 003615 655 SRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVN-------------------------ASGPLEDETTLIGLT 709 (807)
Q Consensus 655 ~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~-------------------------~~~~~~~~~siI~~l 709 (807)
..++.+++.|+..+|||+|||+.++||.||+++....... |...+..+.++|.+.
T Consensus 148 ~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~~ 227 (415)
T COG5533 148 DILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAKT 227 (415)
T ss_pred HHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHHH
Confidence 9999999999999999999999999999999765432211 111122456899999
Q ss_pred cceEEEEEEEECCCCCceeeeeeceeEEeecCCC-CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccc
Q 003615 710 FGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN 788 (807)
Q Consensus 710 F~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~-~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~ 788 (807)
|.|+..++++|..|++.+.++.+|..|.+|++.- ...|+|||++|.++|.|+|+++|+|++|++++.++|++.|..+|+
T Consensus 228 f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~ 307 (415)
T COG5533 228 FFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPD 307 (415)
T ss_pred HhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCc
Confidence 9999999999999999999999999999999852 256999999999999999999999999999999999999999999
Q ss_pred eeEEEEeeeeeCCCcccC
Q 003615 789 ILTIALKRFQVFSPLPIS 806 (807)
Q Consensus 789 ~LIIqLKRF~~~~wvP~k 806 (807)
||||||+||...--.|+|
T Consensus 308 ~LII~i~RF~i~V~~~~k 325 (415)
T COG5533 308 VLIIHISRFHISVMGRKK 325 (415)
T ss_pred eEEEEeeeeeEEeecccc
Confidence 999999999943333433
No 16
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=325.68 Aligned_cols=159 Identities=26% Similarity=0.445 Sum_probs=137.7
Q ss_pred ccccccccCCCccchHHHHHHHhcChhHHHHHhhccccccccc-----ccchHHHHHHHHHHHHhCC-CCCCCHHHHHHH
Q 003615 583 LQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAK-----KDWCFTCELENLILRAKDG-KSPLSPIGILSR 656 (807)
Q Consensus 583 lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~-----~~~~~l~qL~kLf~~l~s~-~~~IsP~~fl~~ 656 (807)
.|.+||+|+||||||||.||||.|++.+|+||+...+....+. -...+..++..|+.+++.+ ..++.|.+|+..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~t 342 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKT 342 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHH
Confidence 5889999999999999999999999999999998777655542 2456788888998888865 478999999999
Q ss_pred HHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCC----------------------CCCcccccccccceEE
Q 003615 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGP----------------------LEDETTLIGLTFGGYL 714 (807)
Q Consensus 657 L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~----------------------~~~~~siI~~lF~Gkl 714 (807)
++.++..|.+++|||.+||+-+|||.||+.+.+......... .+.+.++|.++|.|..
T Consensus 343 IG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmy 422 (823)
T COG5560 343 IGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMY 422 (823)
T ss_pred HhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Confidence 999999999999999999999999999998875543322211 2357899999999999
Q ss_pred EEEEEECCCCCceeeeeeceeEEeecC
Q 003615 715 RSKIKCTKCHGKSERQERMMDLTVEIE 741 (807)
Q Consensus 715 ~s~I~C~~C~~vS~~~E~f~~LsL~Ip 741 (807)
++++.|..|+.++.+++||++|+||+|
T Consensus 423 KSTL~Cp~C~~vsitfDPfmdlTLPLP 449 (823)
T COG5560 423 KSTLTCPGCGSVSITFDPFMDLTLPLP 449 (823)
T ss_pred hceeeccCcCceeeeecchhhccccCc
Confidence 999999999999999999999999994
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.9e-31 Score=279.37 Aligned_cols=141 Identities=38% Similarity=0.667 Sum_probs=128.3
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~ 666 (807)
||+|+||||||||+||+|+++|+||++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999976411
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCcee-eeeeceeEEeecCCC--
Q 003615 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSE-RQERMMDLTVEIEGD-- 743 (807)
Q Consensus 667 ~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~-~~E~f~~LsL~Ip~~-- 743 (807)
.||||||||++||+.|+. .+.++|.|++.+.++|..|+.++. +.|+|++|+|+||..
T Consensus 33 -~QqDa~EFl~~ll~~l~~-------------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~ 92 (240)
T cd02662 33 -EQQDAHELFQVLLETLEQ-------------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSS 92 (240)
T ss_pred -hhcCHHHHHHHHHHHHHH-------------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCC
Confidence 899999999999999983 268899999999999999999966 599999999999975
Q ss_pred --CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC-CcccC
Q 003615 744 --IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS-PLPIS 806 (807)
Q Consensus 744 --~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~-wvP~k 806 (807)
..+|++||+.|+.+|.++| |.|++| +..|.++|+||+|||+||.++. |.++|
T Consensus 93 ~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K 147 (240)
T cd02662 93 GSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTK 147 (240)
T ss_pred CCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceee
Confidence 4799999999999999998 999999 5789999999999999999877 76665
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=294.28 Aligned_cols=224 Identities=31% Similarity=0.426 Sum_probs=186.8
Q ss_pred CccccccccccCCCccchHHHHHHHhcChhHHHHHhhccccccc----ccccchHHHHHHHHHHHHhC--CCCCCCHHHH
Q 003615 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC----AKKDWCFTCELENLILRAKD--GKSPLSPIGI 653 (807)
Q Consensus 580 ~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~----~~~~~~~l~qL~kLf~~l~s--~~~~IsP~~f 653 (807)
....+.+||.|+|||||||++||||+.++.||..++...+.... ......+..++.+++..++. +...+.|+.|
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f 375 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRF 375 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHH
Confidence 44567899999999999999999999999999888875443222 23445677778888877774 4566889999
Q ss_pred HHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcC-------------------------CCCCCCCCccccccc
Q 003615 654 LSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-------------------------NASGPLEDETTLIGL 708 (807)
Q Consensus 654 l~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~-------------------------~~~~~~~~~~siI~~ 708 (807)
+..++++.+.|..+.|||++||+.++++.||+++...... .+..........|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 9999999999999999999999999999999988654220 000111122344899
Q ss_pred ccceEEEEEEEECCCCCceeeeeeceeEEeecCCC-----CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEE--EEE
Q 003615 709 TFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-----IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAK--KKL 781 (807)
Q Consensus 709 lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~-----~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~--K~~ 781 (807)
+|.|++.+.++|..|+..+.+++.|++|+|+||.. .++|++|+..|+..|.++++++|.|++|+.+.... |+.
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~ 535 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKL 535 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccccccee
Confidence 99999999999999999999999999999999843 25699999999999999999999999999999885 999
Q ss_pred EeccccceeEEEEeeeeeCC-Cc
Q 003615 782 TIVEAPNILTIALKRFQVFS-PL 803 (807)
Q Consensus 782 ~I~~lP~~LIIqLKRF~~~~-wv 803 (807)
.|.+||++|||||+||..++ |.
T Consensus 536 ~i~~lp~iLiihL~Rf~~~~~~~ 558 (653)
T KOG1868|consen 536 TILRLPKILIIHLKRFSSDGNSF 558 (653)
T ss_pred eeecCCHHHHHHHHHhccCcccc
Confidence 99999999999999999874 54
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=8.4e-29 Score=272.39 Aligned_cols=180 Identities=23% Similarity=0.329 Sum_probs=147.9
Q ss_pred ccccccCCCccchHHHHHHHhcChhHHHHHhhcccccc----------------cc----cccchHHHHHHHHHHHHhCC
Q 003615 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKE----------------CA----KKDWCFTCELENLILRAKDG 644 (807)
Q Consensus 585 p~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~----------------~~----~~~~~~l~qL~kLf~~l~s~ 644 (807)
|+||.|+||||||||+||+|+++|+||++++....... .. ....+|+.+|++||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999997542110 00 12347999999999999855
Q ss_pred C-CCCCHHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCC---CCCCCCcccccccccceEEEEEEEE
Q 003615 645 K-SPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA---SGPLEDETTLIGLTFGGYLRSKIKC 720 (807)
Q Consensus 645 ~-~~IsP~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~---~~~~~~~~siI~~lF~Gkl~s~I~C 720 (807)
. ..+.|..++..+.. .||||+||+..||+.|+..+........ ........++|.++|+|++.+.++|
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c 152 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVP 152 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEe
Confidence 4 88999999987642 8999999999999999998754322100 0111245679999999999999999
Q ss_pred CCCC---CceeeeeeceeEEeecCC---------CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccc
Q 003615 721 TKCH---GKSERQERMMDLTVEIEG---------DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN 788 (807)
Q Consensus 721 ~~C~---~vS~~~E~f~~LsL~Ip~---------~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~ 788 (807)
..|+ ..+.+.|+|++|+|+|+. ...+|.+||+.|+..|. |.+||+
T Consensus 153 ~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~ 209 (343)
T cd02666 153 ESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQ 209 (343)
T ss_pred cccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCH
Confidence 9997 788999999999999986 57899999999998775 899999
Q ss_pred eeEEEEe
Q 003615 789 ILTIALK 795 (807)
Q Consensus 789 ~LIIqLK 795 (807)
+|.||||
T Consensus 210 vl~~qlq 216 (343)
T cd02666 210 RSQVQAQ 216 (343)
T ss_pred HHHHHHh
Confidence 9999988
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.6e-28 Score=252.93 Aligned_cols=140 Identities=41% Similarity=0.685 Sum_probs=131.2
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~ 666 (807)
||.|.||+|||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCCC---
Q 003615 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD--- 743 (807)
Q Consensus 667 ~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~--- 743 (807)
.||||+||+++||+.|+ +++.++|+|++..+++|..|+..+.+.|+|+.|+|+||..
T Consensus 21 -~QqDa~Ef~~~ll~~l~-------------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~~ 80 (230)
T cd02674 21 -DQQDAQEFLLFLLDGLH-------------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGD 80 (230)
T ss_pred -hhhhHHHHHHHHHHHHh-------------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccCC
Confidence 79999999999999998 2488999999999999999999999999999999999864
Q ss_pred --CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCCCcccC
Q 003615 744 --IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSPLPIS 806 (807)
Q Consensus 744 --~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~wvP~k 806 (807)
..+|+++|+.|+.+|.++|.++|+|++|++++.+.++..|.++|+||+|||+||.++++...|
T Consensus 81 ~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K 145 (230)
T cd02674 81 APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRK 145 (230)
T ss_pred CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCccc
Confidence 369999999999999999999999999999999999999999999999999999998765544
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1.2e-26 Score=244.52 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=129.7
Q ss_pred cccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCCC
Q 003615 588 LINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGNG 667 (807)
Q Consensus 588 L~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~~ 667 (807)
|+|.||+||+||.+|+|.+ ++++++.|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------i~~~~~~F~~~ 31 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSS--------------------------------------------------IGKINTEFDND 31 (245)
T ss_pred ceecCCeeeehhHHHHHHH--------------------------------------------------HhhhhhhcCCC
Confidence 7899999999999999842 34567889999
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCCC-CCC
Q 003615 668 REEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD-IGN 746 (807)
Q Consensus 668 ~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~-~~S 746 (807)
+||||||||++|||.|++++..................+.++|+|++++.++|..|++++.+.|+|++|+|+|+.. ...
T Consensus 32 ~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~ 111 (245)
T cd02673 32 DQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDI 111 (245)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccccccCCcch
Confidence 9999999999999999987654321110000001122356889999999999999999999999999999999864 467
Q ss_pred HHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 747 LEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 747 Led~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
+++++..|+..+.++ |+|++|+.+ .+.|+.+|.++|+||+||||||++.
T Consensus 112 le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~ 160 (245)
T cd02673 112 DELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLR 160 (245)
T ss_pred HHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeec
Confidence 889999998887775 899999985 7889999999999999999999864
No 22
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-27 Score=271.82 Aligned_cols=215 Identities=27% Similarity=0.428 Sum_probs=184.2
Q ss_pred CccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccc-cc-cccchHHHHHHHHHHHHh-CCCCCCCHHHHHHH
Q 003615 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKE-CA-KKDWCFTCELENLILRAK-DGKSPLSPIGILSR 656 (807)
Q Consensus 580 ~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~-~~-~~~~~~l~qL~kLf~~l~-s~~~~IsP~~fl~~ 656 (807)
+...+.+||+|-|+|||||+++|-|.++|.+|+-++...+... .. .....+++++|.+|..+. ++-.++-|..|...
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~ 169 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQ 169 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Confidence 3445779999999999999999999999999998776544311 11 112238999999996665 66689999999999
Q ss_pred HHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeE
Q 003615 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDL 736 (807)
Q Consensus 657 L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~L 736 (807)
++..+......+||||-|||..|||.+++.+++- +...++...|+|....+-.|..|-+.-...|.|+.|
T Consensus 170 Fr~~~~pln~reqhDA~eFf~sLld~~De~LKkl----------g~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l 239 (944)
T KOG1866|consen 170 FRLWGEPLNLREQHDALEFFNSLLDSLDEALKKL----------GHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTL 239 (944)
T ss_pred hhccCCccchHhhhhHHHHHHHHHHHHHHHHHHh----------CCcHHHHHHhcCccchhhhhccCCcccCccccceee
Confidence 9877777888899999999999999999876553 233568999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeee--CCCcccC
Q 003615 737 TVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQV--FSPLPIS 806 (807)
Q Consensus 737 sL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~--~~wvP~k 806 (807)
+|+|.. .+|+++|++|.+.|.++|.|+|+|++|++|....||+.|++||.+|+||||||.| .+.--+|
T Consensus 240 ~l~i~~--~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK 309 (944)
T KOG1866|consen 240 NLDIRH--QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIK 309 (944)
T ss_pred eeeccc--chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccc
Confidence 999994 7999999999999999999999999999999999999999999999999999997 3333444
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.1e-27 Score=266.88 Aligned_cols=205 Identities=26% Similarity=0.394 Sum_probs=179.4
Q ss_pred CccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 003615 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQS 659 (807)
Q Consensus 580 ~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k 659 (807)
+.+.|++||+|.|+||||||.||.||.+..||+..+...... ......+..+||++|+.|+.++.+++..+|...++
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~--p~grdSValaLQr~Fynlq~~~~PvdTteltrsfg- 264 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH--PRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFG- 264 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC--CCccchHHHHHHHHHHHHhccCCCcchHHhhhhcC-
Confidence 457899999999999999999999999999999988644211 13455678899999999999999999999988875
Q ss_pred hcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEee
Q 003615 660 IGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVE 739 (807)
Q Consensus 660 ~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~ 739 (807)
+..+...+|+|.|||-+-|.|.|++..+.. .-...++.+|-|++.+.+.|.+-...+.+.|.||++.|+
T Consensus 265 -Wds~dsf~QHDiqEfnrVl~DnLEksmrgt----------~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlN 333 (1089)
T COG5077 265 -WDSDDSFMQHDIQEFNRVLQDNLEKSMRGT----------VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLN 333 (1089)
T ss_pred -cccchHHHHHhHHHHHHHHHHHHHHhhcCC----------hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhc
Confidence 556777899999999999999999732211 112347899999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 740 IEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 740 Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
+.+. .+|+|.++.|.+.|+++|+|+|.|++-| .+.|.|..-|.+||+||-||||||+++
T Consensus 334 vK~~-knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyD 392 (1089)
T COG5077 334 VKGM-KNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYD 392 (1089)
T ss_pred ccch-hhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccc
Confidence 9974 7999999999999999999999999977 599999999999999999999999973
No 24
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.7e-26 Score=280.76 Aligned_cols=217 Identities=26% Similarity=0.355 Sum_probs=185.6
Q ss_pred cccCCccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCC-CCCHHHHH
Q 003615 576 YNWNKVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKS-PLSPIGIL 654 (807)
Q Consensus 576 ~~~~~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~-~IsP~~fl 654 (807)
|.+.+....++||.|+||||||||+||+||+++.||+.++.........++...++.+|++||+.|+..+. ++++..+.
T Consensus 161 ~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~ 240 (1093)
T KOG1863|consen 161 YDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSELT 240 (1093)
T ss_pred hhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcCCCCcCchhhh
Confidence 45545444559999999999999999999999999999988653222335566699999999999997665 99999999
Q ss_pred HHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeece
Q 003615 655 SRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMM 734 (807)
Q Consensus 655 ~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~ 734 (807)
..++... ....+|||++||++.|+|.|++...... ....+.++|.|++.+.+.|..|...+.+.|.|+
T Consensus 241 ~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~----------~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~ 308 (1093)
T KOG1863|consen 241 KSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK----------VENTLQDLFTGKMKSVIKCIDVDFESSRSESFL 308 (1093)
T ss_pred hhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh----------hhhhhhhhhcCCcceEEEEEeeeeecccccccc
Confidence 9997543 4557999999999999999998543322 234689999999999999999999999999999
Q ss_pred eEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC--CCcccC
Q 003615 735 DLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF--SPLPIS 806 (807)
Q Consensus 735 ~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~--~wvP~k 806 (807)
++.|++.+. .+|.++|..|+..|+++|+|+ +|..|...+.|.|...+.+||++|.|||+||.|+ ...++|
T Consensus 309 d~ql~~~g~-~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~K 380 (1093)
T KOG1863|consen 309 DLQLNGKGV-KNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIK 380 (1093)
T ss_pred Cccccccch-hhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceee
Confidence 999999974 789999999999999999999 9999999999999999999999999999999985 344443
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.91 E-value=2.3e-24 Score=222.31 Aligned_cols=163 Identities=36% Similarity=0.573 Sum_probs=130.5
Q ss_pred ccccccCCCccchHHHHHHHhcChhHHHHHhhcc-----cccccccccchHHHHHHHHHHHHhCC---CCCCCHHHHHHH
Q 003615 585 PCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGL-----HSKECAKKDWCFTCELENLILRAKDG---KSPLSPIGILSR 656 (807)
Q Consensus 585 p~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~-----~~~~~~~~~~~~l~qL~kLf~~l~s~---~~~IsP~~fl~~ 656 (807)
|+||.|.||||||||+||+|+++|+|+++++... ..........+++++|++||..|+.. ...+.|..|+..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999998651 11122244567999999999999965 678999999999
Q ss_pred HHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeecee
Q 003615 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-NASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (807)
Q Consensus 657 L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~-~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~ 735 (807)
++...+.|..+.||||+|||..||+.|+++....... ..........+++.++|++++...++|..|+..
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~--------- 151 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS--------- 151 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE---------
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc---------
Confidence 9999999999999999999999999999876442110 000011245678899999999999999999977
Q ss_pred EEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 736 LTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 736 LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
+..|.++|+||+|+|+||.++
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~ 172 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFD 172 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEE
T ss_pred --------------------------------------------ccccccccceeeeccccceec
Confidence 568999999999999999653
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.8e-24 Score=243.40 Aligned_cols=219 Identities=33% Similarity=0.592 Sum_probs=191.2
Q ss_pred ccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccc-cchHHHHHHHHHHHHhCC--CCCCCHHHHHHHH
Q 003615 581 VELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKK-DWCFTCELENLILRAKDG--KSPLSPIGILSRL 657 (807)
Q Consensus 581 ~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~-~~~~l~qL~kLf~~l~s~--~~~IsP~~fl~~L 657 (807)
...+.+||+|+||||+||++||.|.+.+..+...+...+....... ..|+.+++.+++..+++. +.++.|..++..+
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~ 236 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLV 236 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHH
Confidence 4567899999999999999999999999999999988887555555 789999999999999965 5889999999999
Q ss_pred HhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCC-C-CCCCCCcccccccccceEEEEEEEECCCCCceeeeeecee
Q 003615 658 QSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVN-A-SGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMD 735 (807)
Q Consensus 658 ~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~-~-~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~ 735 (807)
++..+.+.+++|||||||+..+++.+|.+. +..+.. . ........+++...|.|.+...++|..|+..+..+++|++
T Consensus 237 ~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~d 315 (492)
T KOG1867|consen 237 WKHSPNLAGYEQQDAHEFLIALLDRLHREK-DDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMD 315 (492)
T ss_pred HHhCcccccccccchHHHHHHhcccccccc-cccccccccccCCcccccccceeecceeccceeehhhcceeeeccCccc
Confidence 999999999999999999999999999876 111100 0 0011134688999999999999999999999999999999
Q ss_pred EEeecCCCC---------CCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 736 LTVEIEGDI---------GNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 736 LsL~Ip~~~---------~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
|+|+||... ..+.+|+..|...|......++.|..|+.++.+.|+..|.++|.+|.+||+||++.
T Consensus 316 isL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~ 389 (492)
T KOG1867|consen 316 ISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHS 389 (492)
T ss_pred eeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccc
Confidence 999998532 56999999999999988888999999999999999999999999999999999874
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=1.9e-23 Score=211.73 Aligned_cols=154 Identities=34% Similarity=0.532 Sum_probs=132.7
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~ 666 (807)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCCC---
Q 003615 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGD--- 743 (807)
Q Consensus 667 ~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~--- 743 (807)
.||||+|||..+|+.|+.++...... ........+.+.++|+|.+...++|..|+..+.....+..+.|++|..
T Consensus 21 -~q~Da~E~l~~ll~~l~~~~~~~~~~--~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~~~~~~~ 97 (255)
T cd02257 21 -EQQDAHEFLLFLLDKLHEELKKSSKR--TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPLPVKGLP 97 (255)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhccc--ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeeccCCCCC
Confidence 79999999999999999877653221 111123456799999999999999999998888888888899888865
Q ss_pred CCCHHHHHHhhhcceeeCCCCceecCCCC--ceeeEEEEEEeccccceeEEEEeeeeeCC-CcccC
Q 003615 744 IGNLEEALRRYTGTEILDGENKYKCDRCK--SYEKAKKKLTIVEAPNILTIALKRFQVFS-PLPIS 806 (807)
Q Consensus 744 ~~SLed~L~~f~~~E~LdgdNky~CekC~--~k~~A~K~~~I~~lP~~LIIqLKRF~~~~-wvP~k 806 (807)
..+|+++|+.++.+|.+++ +.|..|+ +.+.+.++..|.++|+||+|+|+||.++. |..+|
T Consensus 98 ~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k 160 (255)
T cd02257 98 QVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEK 160 (255)
T ss_pred CCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeecccccccc
Confidence 4899999999999999998 8899998 68889999999999999999999999876 55544
No 28
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=1.2e-23 Score=219.22 Aligned_cols=148 Identities=23% Similarity=0.259 Sum_probs=121.2
Q ss_pred ccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCCC
Q 003615 587 GLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLGN 666 (807)
Q Consensus 587 GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~~ 666 (807)
||.|.||||++|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999975
Q ss_pred CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCCCCCC
Q 003615 667 GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEGDIGN 746 (807)
Q Consensus 667 ~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~~~~S 746 (807)
.||||+||+..||+.|++.+...... ........++|.++|+|++.+++.| |+..+.+.|+|++|+|+|.+. .+
T Consensus 21 -~QQDa~Ef~~~Lld~Le~~l~~~~~~--~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~-~~ 94 (228)
T cd02665 21 -QQQDVSEFTHLLLDWLEDAFQAAAEA--ISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY-GN 94 (228)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccccc--ccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC-CC
Confidence 59999999999999999977533210 0111245678999999999987777 778889999999999999875 89
Q ss_pred HHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCCCcccC
Q 003615 747 LEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSPLPIS 806 (807)
Q Consensus 747 Led~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~wvP~k 806 (807)
|++||+.|+.+|.+++++.++ ...+.|+..|.++|+||+||||||.++.....|
T Consensus 95 L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~K 148 (228)
T cd02665 95 LHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEK 148 (228)
T ss_pred HHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEE
Confidence 999999999999998854332 234667788999999999999999997644443
No 29
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-22 Score=230.43 Aligned_cols=158 Identities=28% Similarity=0.407 Sum_probs=118.9
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhccccccc-----------------ccccchHHHHHHHHHHHHhCC
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKEC-----------------AKKDWCFTCELENLILRAKDG 644 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~-----------------~~~~~~~l~qL~kLf~~l~s~ 644 (807)
....+||.|||||||+|||||+|..+|.+|+.|......... ..+...++.+|..|.......
T Consensus 202 ~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ 281 (877)
T KOG1873|consen 202 GYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETT 281 (877)
T ss_pred cccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhcc
Confidence 345589999999999999999999999999999764332110 023445666666655555567
Q ss_pred CCCCCHHHHHHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcC-----------------------CCCCCCCC
Q 003615 645 KSPLSPIGILSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGV-----------------------NASGPLED 701 (807)
Q Consensus 645 ~~~IsP~~fl~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~-----------------------~~~~~~~~ 701 (807)
.+.|.|+.|+..+...+|+|..+.||||||.|++|||.|..+..+.... .-.++...
T Consensus 282 ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~ 361 (877)
T KOG1873|consen 282 KSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKD 361 (877)
T ss_pred CCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhccccccc
Confidence 8999999999999999999999999999999999999997643221110 00111223
Q ss_pred cccccccccceEEEEEEEECCCCCceeeeeeceeEEeec
Q 003615 702 ETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740 (807)
Q Consensus 702 ~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~I 740 (807)
..-++-.+|.|-+.+.+.|..|. ++...+.|.+++|||
T Consensus 362 ~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv 399 (877)
T KOG1873|consen 362 LSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPV 399 (877)
T ss_pred CCcccccccCCCcccchhhhccc-eeccchhhccccccc
Confidence 34455688999999999999998 777778888888777
No 30
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.87 E-value=2.8e-21 Score=207.78 Aligned_cols=274 Identities=18% Similarity=0.188 Sum_probs=199.0
Q ss_pred cccCccceeeccccCCCC--CCC-ccchhhHhhhcccCCchhhhhhhcCccccCcccCCccccHHHHhhhcccCCccccc
Q 003615 509 VQRSSAMSAQIENSPSNV--GNG-LKTSLWKAVDQFRGSKSSKQCLSVGCETAGRYSDKGLFSYELFVKLYNWNKVELQP 585 (807)
Q Consensus 509 ~~~s~a~l~~Ite~~~~G--~~d-ly~~vle~~d~v~dp~l~khL~~~Gi~I~~~~keksL~~~E~~~kl~~~~~~~lgp 585 (807)
.++|.|+-+.|++.++.| ..+ +..++++..+++.||.+......+.-......-.+...-..+..+.+....+-.|.
T Consensus 55 ~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe~~ei~d~s~~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~ 134 (442)
T KOG2026|consen 55 GEKSHAYTHSLEEGHHVFLNLSTELKFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGF 134 (442)
T ss_pred CccccchhccccccccceeccccceeEEecchhccccCchhhhhhccccceeehhhcccccccchhhhhhhcCCcceeee
Confidence 577889999999986555 344 57788887788888876654332221111111111111111233445555666788
Q ss_pred cccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHhhc-
Q 003615 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGK---SPLSPIGILSRLQSIG- 661 (807)
Q Consensus 586 ~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~---~~IsP~~fl~~L~k~~- 661 (807)
+||.|+-++-|+|++||+|.+.+++|+|++.... ..+....+...|..|++.+|+.+ +.++|.+|++++-...
T Consensus 135 VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n---~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~ 211 (442)
T KOG2026|consen 135 VGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN---YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSK 211 (442)
T ss_pred eccchhhhHHHHHHHHHHHhccchhhhhhccccc---ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999987532 11445678888999999999764 7899999999986544
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECC----CCCceeeeeeceeEE
Q 003615 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTK----CHGKSERQERMMDLT 737 (807)
Q Consensus 662 ~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~----C~~vS~~~E~f~~Ls 737 (807)
..|..+.|-|+.|||.|||+.||..+.. .++..+||+..|+|.++..-+-.. -.......-+|++|+
T Consensus 212 k~f~i~~q~DpveFlswllntlhs~l~~---------~k~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~Lt 282 (442)
T KOG2026|consen 212 KRFRIGQQSDPVEFLSWLLNTLHSDLRG---------SKKASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLT 282 (442)
T ss_pred hheecCCCCCHHHHHHHHHHHHHHHhCC---------CCCchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEE
Confidence 4799999999999999999999986532 225568999999999987655433 122345667999999
Q ss_pred eecCCC-------------CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCCCcc
Q 003615 738 VEIEGD-------------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSPLP 804 (807)
Q Consensus 738 L~Ip~~-------------~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~wvP 804 (807)
|++|.. -+.|.+.|+.|.....-+ |. ....+ +|+++.++|+|||+|++||+-++|.-
T Consensus 283 LDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ 352 (442)
T KOG2026|consen 283 LDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFK 352 (442)
T ss_pred ecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeeccccCccc
Confidence 999852 268999999987544332 11 11223 88999999999999999999988763
No 31
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.85 E-value=7.7e-21 Score=204.96 Aligned_cols=210 Identities=23% Similarity=0.393 Sum_probs=178.7
Q ss_pred cccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHh-CC-CCCCCHHHHHHHHHhhccc
Q 003615 586 CGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAK-DG-KSPLSPIGILSRLQSIGSQ 663 (807)
Q Consensus 586 ~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~-s~-~~~IsP~~fl~~L~k~~~~ 663 (807)
.||.|.+++||+||+||+|+.+|++|+.++... .| ....|++|+|.-||..|. .. .....+..|++.++.....
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c-~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---EC-PKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWIPEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CC-CccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcCHHH
Confidence 499999999999999999999999999998765 33 678999999999999998 44 3566788999999877655
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHhhhcC---CCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeec
Q 003615 664 LGNGREEDAHEFLRYAIDTMQSVCIEEAGV---NASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEI 740 (807)
Q Consensus 664 F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~---~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~I 740 (807)
...+.|||.++|+++||++|+.++...... ..........+.|.++|+......++|..|+..+.+.+....+.|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~y 156 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPY 156 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccC
Confidence 666779999999999999999887654321 01112224456799999999999999999999999999888888888
Q ss_pred CC--CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC-CC
Q 003615 741 EG--DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF-SP 802 (807)
Q Consensus 741 p~--~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~-~w 802 (807)
|. ...++.++|+.++..|.... .+|++|++++....+..|.++|+||.|.++|+... .|
T Consensus 157 p~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w 218 (295)
T PF13423_consen 157 PPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFW 218 (295)
T ss_pred CCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCccccc
Confidence 75 35899999999999999886 99999999999999999999999999999999986 45
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.1e-22 Score=241.32 Aligned_cols=162 Identities=25% Similarity=0.392 Sum_probs=135.0
Q ss_pred CccccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccc-----cccchHHHHHHHHHHHHhCCCC-CCCHHHH
Q 003615 580 KVELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA-----KKDWCFTCELENLILRAKDGKS-PLSPIGI 653 (807)
Q Consensus 580 ~~~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~-----~~~~~~l~qL~kLf~~l~s~~~-~IsP~~f 653 (807)
....|.+||.|+|||||||+.+|+|.+.++++.+++...+...++ .....+...+..+...+|.... .+.|..+
T Consensus 241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~ 320 (842)
T KOG1870|consen 241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSF 320 (842)
T ss_pred CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhh
Confidence 456788999999999999999999999999999998765544221 3345567778888889997665 7999999
Q ss_pred HHHHHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCC-------------------CCCCCCCcccccccccceEE
Q 003615 654 LSRLQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVN-------------------ASGPLEDETTLIGLTFGGYL 714 (807)
Q Consensus 654 l~~L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~-------------------~~~~~~~~~siI~~lF~Gkl 714 (807)
...+....+.|.++.|||.+|||-+|+|.+|+.+....... +......+.+++.++|.|.+
T Consensus 321 ~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~ 400 (842)
T KOG1870|consen 321 RTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTY 400 (842)
T ss_pred hhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeeccee
Confidence 99999999999999999999999999999999775443320 11112346789999999999
Q ss_pred EEEEEECCCCCceeeeeeceeEEeecC
Q 003615 715 RSKIKCTKCHGKSERQERMMDLTVEIE 741 (807)
Q Consensus 715 ~s~I~C~~C~~vS~~~E~f~~LsL~Ip 741 (807)
++.++|..|++++.++++|.+|+|++|
T Consensus 401 ~S~~~c~~C~~~svt~d~f~~Lslp~p 427 (842)
T KOG1870|consen 401 KSTLQCPTCGKVSVTFDPFGYLSLPLP 427 (842)
T ss_pred cccccCccCCCceEEeeccccccccCC
Confidence 999999999999999999999998884
No 33
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.6e-23 Score=230.48 Aligned_cols=181 Identities=24% Similarity=0.375 Sum_probs=151.4
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIG 661 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~ 661 (807)
..+++||+|-.-|||+|+.+|+|+..|.|++.++... +.++....+.+.++ +
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~--------------------------~~~~et~dlt~sfg--w 135 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE--------------------------NDSLETKDLTQSFG--W 135 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC--------------------------cccccchhhHhhcC--C
Confidence 3478999999999999999999999999999987422 22333333333332 1
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecC
Q 003615 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (807)
Q Consensus 662 ~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip 741 (807)
..-....|+|.+|.-+.++|.|+-..+. .+...+|.+++.|++...+.|..|+..+.+.+.|++|+|++.
T Consensus 136 ~s~ea~~qhdiqelcr~mfdalehk~k~----------t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~ 205 (1203)
T KOG4598|consen 136 TSNEAYDQHDVQELCRLMFDALEHKWKG----------TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVK 205 (1203)
T ss_pred CcchhhhhhhHHHHHHHHHHHHHhhhcC----------chHHHHHHHHhcchHHHHHHHHHcCccccccceeeccccccc
Confidence 1123358999999999999999863321 234568999999999999999999999999999999999996
Q ss_pred C-----CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 742 G-----DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 742 ~-----~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
. ...+++++|..|.+||.|+|.|+|-|++|+++++|.|..+|+.||-+|+||||||.|+
T Consensus 206 pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfd 269 (1203)
T KOG4598|consen 206 PFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFD 269 (1203)
T ss_pred CCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeeccccc
Confidence 3 2479999999999999999999999999999999999999999999999999999974
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.82 E-value=5.2e-20 Score=196.68 Aligned_cols=154 Identities=23% Similarity=0.375 Sum_probs=126.8
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhc
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIG 661 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~ 661 (807)
..+++||.|.|.|||+||+||+|+++|+||+. +. +.........|++|+|..|| ..+
T Consensus 12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~-~~--~~~~~~~~~~~l~~el~~lf------------s~~-------- 68 (268)
T cd02672 12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNF-TA--IILVACPKESCLLCELGYLF------------STL-------- 68 (268)
T ss_pred cccccccccCCccchHHHHHHHHHhcHHHHHH-HH--hhcccCCcCccHHHHHHHHH------------HHH--------
Confidence 34689999999999999999999999999998 22 22222256789999999999 111
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecC
Q 003615 662 SQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIE 741 (807)
Q Consensus 662 ~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip 741 (807)
.+-|-++|++.+..+.... + ..|++++.+.+++++|+|++|
T Consensus 69 ----------iq~F~~fll~~i~~~~~~~-------------------~----------~~C~~~s~~~~~~~~LsLpip 109 (268)
T cd02672 69 ----------IQNFTRFLLETISQDQLGT-------------------P----------FSCGTSRNSVSLLYTLSLPLG 109 (268)
T ss_pred ----------HHHHHHHHHHHHHHHhccc-------------------C----------CCCCceeeccccceeeeeecC
Confidence 1346688899888543110 0 679999999999999999999
Q ss_pred CC----CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccc----eeEEEEeeeeeC
Q 003615 742 GD----IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPN----ILTIALKRFQVF 800 (807)
Q Consensus 742 ~~----~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~----~LIIqLKRF~~~ 800 (807)
.. ..+|.+||+.|+++|.+. +|+|++|++++.|.|+++|.++|+ ||+||||||...
T Consensus 110 ~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~ 173 (268)
T cd02672 110 STKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGE 173 (268)
T ss_pred ccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChh
Confidence 53 479999999999998654 499999999999999999999999 999999999863
No 35
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.4e-19 Score=209.98 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=175.5
Q ss_pred ccccccccCCCccchH--HHHHHHhcChhHHHHHhhccccccc-ccccchHHHHHHHHHHHHh---CCCCCCCHHHHHHH
Q 003615 583 LQPCGLINCGNSCYAN--VVLQCLAFTPPLTAYFLQGLHSKEC-AKKDWCFTCELENLILRAK---DGKSPLSPIGILSR 656 (807)
Q Consensus 583 lgp~GL~NLGNTCYmN--SVLQ~LfsiP~Fr~~ll~~~~~~~~-~~~~~~~l~qL~kLf~~l~---s~~~~IsP~~fl~~ 656 (807)
....|..|.+++||.| +|.|.+..+..++...+........ ......++..+..++.... .....+.|..|+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~ 309 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISD 309 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhh
Confidence 3458999999999999 9999999999988665442221111 0122333444444443322 23467899999999
Q ss_pred HHhhcccCCCCccccHHHHHHHHHHHHHHHHHhhhcCCC----------CCCC------------CCcccccccccceEE
Q 003615 657 LQSIGSQLGNGREEDAHEFLRYAIDTMQSVCIEEAGVNA----------SGPL------------EDETTLIGLTFGGYL 714 (807)
Q Consensus 657 L~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~----------~~~~------------~~~~siI~~lF~Gkl 714 (807)
+++....|.++.|||||||+.++++.+++....+..... .... .....++..+|.|++
T Consensus 310 ~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l 389 (587)
T KOG1864|consen 310 LIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGIL 389 (587)
T ss_pred hhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCee
Confidence 999999999999999999999999999986544331100 0000 124578999999999
Q ss_pred EEEEEECCCCCceeeeeeceeEEeecCC-CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEE
Q 003615 715 RSKIKCTKCHGKSERQERMMDLTVEIEG-DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIA 793 (807)
Q Consensus 715 ~s~I~C~~C~~vS~~~E~f~~LsL~Ip~-~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIq 793 (807)
..+.+|..|..++.+.+.|.+++++++. +..++..||+.|..+|.+.|+|+|+|++|..++.|.|++.++++|.+|+||
T Consensus 390 ~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 390 TNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLH 469 (587)
T ss_pred eeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeee
Confidence 9999999999999999999999999985 458999999999999999999999999999999999999999999999999
Q ss_pred EeeeeeCC
Q 003615 794 LKRFQVFS 801 (807)
Q Consensus 794 LKRF~~~~ 801 (807)
||||.+..
T Consensus 470 Lkrfk~~~ 477 (587)
T KOG1864|consen 470 LKRFKYSE 477 (587)
T ss_pred hhcccccc
Confidence 99999863
No 36
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.6e-17 Score=175.53 Aligned_cols=214 Identities=23% Similarity=0.288 Sum_probs=152.1
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhccc-ccccccccchHHHHHHHHHHHHh------------------
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLH-SKECAKKDWCFTCELENLILRAK------------------ 642 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~-~~~~~~~~~~~l~qL~kLf~~l~------------------ 642 (807)
.+.|+|++|-||-|||||+||+|+.+++|.+.+....- ..........++.++..++....
T Consensus 25 ~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 25 PIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred ccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 37899999999999999999999999999888754221 11111223334444444443221
Q ss_pred -----------CCCCCCCHHHHHHHHHhhcc--cCCCCccccHHHHHHHHHHHHHHHHHhhhcC--------------C-
Q 003615 643 -----------DGKSPLSPIGILSRLQSIGS--QLGNGREEDAHEFLRYAIDTMQSVCIEEAGV--------------N- 694 (807)
Q Consensus 643 -----------s~~~~IsP~~fl~~L~k~~~--~F~~~~QQDA~EFL~~LLd~L~ee~~~e~~~--------------~- 694 (807)
.+..++-|..+...++.... ....|+|.||.|||.++||.||++..+..+. +
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~~ 184 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLINN 184 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccccc
Confidence 01133444444444432221 2356899999999999999999976432110 0
Q ss_pred ----CCCC--------------------------CCCcccccccccceEEEEEEEECCCCCceeeeeeceeEEeecCC-C
Q 003615 695 ----ASGP--------------------------LEDETTLIGLTFGGYLRSKIKCTKCHGKSERQERMMDLTVEIEG-D 743 (807)
Q Consensus 695 ----~~~~--------------------------~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~~E~f~~LsL~Ip~-~ 743 (807)
.... ..-..+.|.++|+|++++.+.=.. .+++..-+||..|.|+|.. .
T Consensus 185 ~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldiq~~~ 263 (420)
T KOG1871|consen 185 GNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDIQSEK 263 (420)
T ss_pred cccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeeeeccc
Confidence 0000 001246899999999999987655 6778999999999999953 4
Q ss_pred CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeC
Q 003615 744 IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVF 800 (807)
Q Consensus 744 ~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~ 800 (807)
..+++++|..+...|.+.+ |.-. -+....+.+++.+.+||.+|++|||||-|.
T Consensus 264 i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 264 IHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred cCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 6899999999999999986 5544 777888999999999999999999999984
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6e-15 Score=163.52 Aligned_cols=208 Identities=19% Similarity=0.214 Sum_probs=159.7
Q ss_pred cccccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccc---cccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECA---KKDWCFTCELENLILRAKDGKSPLSPIGILSRLQ 658 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~---~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~ 658 (807)
...++||.|+|||||||+.+|+|-..|+++..+-......... .....+..+|+.+|..+... .++.|..++..+.
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~-~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK-GAVAPINLLQTLS 180 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc-CCcchHHHHHHHH
Confidence 3457899999999999999999999999998876533211111 11355778899999999988 9999999999999
Q ss_pred hhcccCCC------CccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceEEEEEEEECCCCCceee--e
Q 003615 659 SIGSQLGN------GREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGYLRSKIKCTKCHGKSER--Q 730 (807)
Q Consensus 659 k~~~~F~~------~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~~C~~vS~~--~ 730 (807)
+..|+|.. ..||||.|++..++-.++..+...... ......+..+|++.+..+..|..-...... .
T Consensus 181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~------~~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~ 254 (473)
T KOG1872|consen 181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEA------PCLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGR 254 (473)
T ss_pred HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccc------cchhHHHHHhhccccccceeeccCccccccccc
Confidence 88888854 799999999999999998744222111 134456888999999999999886655443 7
Q ss_pred eeceeEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCC
Q 003615 731 ERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFS 801 (807)
Q Consensus 731 E~f~~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~ 801 (807)
|.|..|..-|......+...|+.-+..++- ...+.-|......|.+.|.+||+||+||+-||.+..
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~-----K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~ 320 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQ-----KISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKA 320 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhh-----ccCcccCCChHHHHHhHhhcCcccceEEEEEEEecc
Confidence 888889988887777777777765544432 344455555556788999999999999999999854
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.35 E-value=9.9e-13 Score=138.74 Aligned_cols=114 Identities=23% Similarity=0.314 Sum_probs=86.2
Q ss_pred ccccCCC-ccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccCC
Q 003615 587 GLINCGN-SCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQLG 665 (807)
Q Consensus 587 GL~NLGN-TCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F~ 665 (807)
|+.|.+| +|||-|.|=+||.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999876
Q ss_pred CCccccHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcccccccccceE-EEEEEEECCCCCceeeeeeceeEEeecCC--
Q 003615 666 NGREEDAHEFLRYAIDTMQSVCIEEAGVNASGPLEDETTLIGLTFGGY-LRSKIKCTKCHGKSERQERMMDLTVEIEG-- 742 (807)
Q Consensus 666 ~~~QQDA~EFL~~LLd~L~ee~~~e~~~~~~~~~~~~~siI~~lF~Gk-l~s~I~C~~C~~vS~~~E~f~~LsL~Ip~-- 742 (807)
+|||+.|||.+|+++|+.-+. ++.-++|.|- ...... +...|.++.|.++.+.
T Consensus 22 --~q~D~~e~~~~l~~~~~~~~~---------------~~~~~~~~~g~~~~~~~-------~~~~e~~l~l~ip~~~~~ 77 (241)
T cd02670 22 --EQQDPEEFFNFITDKLLMPLL---------------EPKVDIIHGGKKDQDDD-------KLVNERLLQIPVPDDDDG 77 (241)
T ss_pred --HhcCHHHHHHHHHHHHhhhhh---------------hHHHHHHhcCccccccc-------cccccceEEeecccCCCC
Confidence 699999999999999985322 1234555442 221110 3335666666666542
Q ss_pred CCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEEEeeeeeCCCcccC
Q 003615 743 DIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIALKRFQVFSPLPIS 806 (807)
Q Consensus 743 ~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIqLKRF~~~~wvP~k 806 (807)
..++|++||+.|++.|+ |.++|+||+||||||.+..|.++|
T Consensus 78 ~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~K 118 (241)
T cd02670 78 GGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQK 118 (241)
T ss_pred CcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCccee
Confidence 35899999999998886 899999999999999997776665
No 39
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.85 E-value=8.9e-10 Score=83.38 Aligned_cols=37 Identities=57% Similarity=1.200 Sum_probs=34.1
Q ss_pred cCCCCcccccccccCccceecChhhhhhhcchhhhccC
Q 003615 75 CAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDEC 112 (807)
Q Consensus 75 C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C 112 (807)
|..|+++++.+|++|+.++|||++||++||. .||.+|
T Consensus 1 C~~C~~~~~~~C~~C~~~~YCs~~Cq~~~w~-~Hk~~C 37 (37)
T PF01753_consen 1 CAVCGKPALKRCSRCKSVYYCSEECQRADWP-YHKFEC 37 (37)
T ss_dssp -TTTSSCSSEEETTTSSSEESSHHHHHHHHH-HHCCTH
T ss_pred CcCCCCCcCCcCCCCCCEEecCHHHHHHHHH-HHhhhC
Confidence 7899999888999999999999999999997 899886
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.53 E-value=1.3e-07 Score=111.78 Aligned_cols=208 Identities=19% Similarity=0.344 Sum_probs=137.3
Q ss_pred cccccccCCCccchHHHHHHHhcChhHHHHHhhcccccccccccchHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhcc
Q 003615 584 QPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQGLHSKECAKKDWCFTCELENLILRAKDG-KSPLSPIGILSRLQSIGS 662 (807)
Q Consensus 584 gp~GL~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~-~~~IsP~~fl~~L~k~~~ 662 (807)
.+.||.--+-.-|.|++||+|+.+|+||..++... | ....|++|+|.-||..|... ..+.....|+.+++....
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~----C-~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~~ 572 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI----C-TKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRTNPE 572 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc----c-chhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhhChH
Confidence 45888888888899999999999999999998753 3 67899999999999988743 346777888888865432
Q ss_pred cCCCC----------------ccccHHHHHHHHHHHHHH--HHH---hhhcCCCCCCCCCcccccccccceEEEEEEEEC
Q 003615 663 QLGNG----------------REEDAHEFLRYAIDTMQS--VCI---EEAGVNASGPLEDETTLIGLTFGGYLRSKIKCT 721 (807)
Q Consensus 663 ~F~~~----------------~QQDA~EFL~~LLd~L~e--e~~---~e~~~~~~~~~~~~~siI~~lF~Gkl~s~I~C~ 721 (807)
.-.-| --|||..|..-...+..+ .+. +..........-.....+.+.|+-+++....|.
T Consensus 573 a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg 652 (1118)
T KOG1275|consen 573 ASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRCG 652 (1118)
T ss_pred hhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhcc
Confidence 11110 123444333322222211 000 000111111111233578999999999999999
Q ss_pred CCCCceeeeeeceeEEeecCCC--------CCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEEEEeccccceeEEE
Q 003615 722 KCHGKSERQERMMDLTVEIEGD--------IGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKKLTIVEAPNILTIA 793 (807)
Q Consensus 722 ~C~~vS~~~E~f~~LsL~Ip~~--------~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~~~I~~lP~~LIIq 793 (807)
.|+..+.+......+.|..|.. .-.+.+.|++-.. +...-+-+|+.|++.+....+..+..+|++|.|.
T Consensus 653 ~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~---l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in 729 (1118)
T KOG1275|consen 653 ECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLS---LFKNKQAWCETCTKPEPTSQKKNVRSLPDCLSIN 729 (1118)
T ss_pred cccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhh---cccccccccccccCCCCcccccccccCcceeeee
Confidence 9999988776666666666642 1233344443322 2211236899999999999999999999999998
Q ss_pred Eeeeee
Q 003615 794 LKRFQV 799 (807)
Q Consensus 794 LKRF~~ 799 (807)
..-+..
T Consensus 730 ~~~~~~ 735 (1118)
T KOG1275|consen 730 TCLNVH 735 (1118)
T ss_pred eeccch
Confidence 776653
No 41
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.45 E-value=1.7e-08 Score=106.55 Aligned_cols=48 Identities=38% Similarity=0.821 Sum_probs=42.3
Q ss_pred cCCCCCCcCCCCcc-cccccccCccceecChhhhhhhcchhhhccCCCCC
Q 003615 68 YVPQHPQCAVCFSP-TTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPS 116 (807)
Q Consensus 68 ~~~~~~~C~~C~~~-~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C~~~~ 116 (807)
.+.....|..||.+ +.+||+.||++.||+++||+-||. .||++|..+-
T Consensus 315 ~~~d~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf-~HKK~C~~L~ 363 (396)
T KOG1710|consen 315 IAADCQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWF-IHKKVCSFLL 363 (396)
T ss_pred eEEecccccccCCCCccchhhhhHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 33456789999976 589999999999999999999999 8999999883
No 42
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=4.1e-05 Score=90.38 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=59.1
Q ss_pred cccCCCccchHHHHHHHhcChhHHHHHhhcccc--------cccccccchHHHHHHHHHHHHh-----C-CCCCC--CHH
Q 003615 588 LINCGNSCYANVVLQCLAFTPPLTAYFLQGLHS--------KECAKKDWCFTCELENLILRAK-----D-GKSPL--SPI 651 (807)
Q Consensus 588 L~NLGNTCYmNSVLQ~LfsiP~Fr~~ll~~~~~--------~~~~~~~~~~l~qL~kLf~~l~-----s-~~~~I--sP~ 651 (807)
|+|.||+||.||+||+|..+|+|+-.+...... +..........+..+.+...+. + ....+ +-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 999999999999999999999999888652111 1111111211222222211111 0 01111 112
Q ss_pred HHHHHH---HhhcccCCCCccccHHHHHHHHHHHHHHHH
Q 003615 652 GILSRL---QSIGSQLGNGREEDAHEFLRYAIDTMQSVC 687 (807)
Q Consensus 652 ~fl~~L---~k~~~~F~~~~QQDA~EFL~~LLd~L~ee~ 687 (807)
.+.... .+....|....|+||++|+.-|+-.+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 222222 344557889999999999999988887643
No 43
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.42 E-value=0.00011 Score=83.95 Aligned_cols=45 Identities=29% Similarity=0.783 Sum_probs=40.8
Q ss_pred CCCCcCCCCcccccccccCccceecChhhhhhhcchhhhccCCCCCcc
Q 003615 71 QHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSIS 118 (807)
Q Consensus 71 ~~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C~~~~~~ 118 (807)
+.--|++|...+...| |..+.||+.+||..||+ +|++.|+.-...
T Consensus 526 kKQWC~nC~~EAiy~C--CWNTSYCsveCQQ~HW~-~H~ksCrrk~~~ 570 (588)
T KOG3612|consen 526 KKQWCYNCLDEAIYHC--CWNTSYCSVECQQGHWP-EHRKSCRRKKTN 570 (588)
T ss_pred HHHHHHhhhHHHHHHh--hccccccCcchhhccch-hHhhhhcccCCC
Confidence 4567999999999999 99999999999999999 899999876655
No 44
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=93.13 E-value=0.045 Score=60.90 Aligned_cols=50 Identities=42% Similarity=0.858 Sum_probs=44.3
Q ss_pred CCCcCCCCcccccccccCccceecChhhhhhhcchhhhccCCCCCccccc
Q 003615 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISHEI 121 (807)
Q Consensus 72 ~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C~~~~~~~~~ 121 (807)
...|..|+..+...|.+|+.+.|||..+|..||+.+|+..|.......+.
T Consensus 136 ~~~~~~~~~~a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~ 185 (362)
T KOG2061|consen 136 ADLCGSCGCSAPAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI 185 (362)
T ss_pred cchhccCcccCcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence 47899999889999999999999999999999997899999877665543
No 45
>PLN03158 methionine aminopeptidase; Provisional
Probab=92.32 E-value=0.066 Score=61.11 Aligned_cols=42 Identities=29% Similarity=0.751 Sum_probs=35.9
Q ss_pred CCCCCcCCCCcccccccccCcc-------ceecChhhhhhhcchhhhccC
Q 003615 70 PQHPQCAVCFSPTTTRCARCKA-------VRYCSGKCQIVHWRQGHKDEC 112 (807)
Q Consensus 70 ~~~~~C~~C~~~~~~rCs~Ck~-------v~YCs~~CQ~~~W~~~HK~~C 112 (807)
+....|+.|++.+...|-.|.. .++||++|=+..|+ .||..=
T Consensus 7 ~~~~~c~~c~~~a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 55 (396)
T PLN03158 7 TSPLACARCSKPAHLQCPKCLELKLPREGASFCSQDCFKAAWS-SHKSVH 55 (396)
T ss_pred CCcccccCCCCcccccCccchhcCCCCCCceeECHHHHHHHHH-HHHHHH
Confidence 4566799999999999999965 68999999999999 787764
No 46
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=87.67 E-value=0.2 Score=53.57 Aligned_cols=77 Identities=17% Similarity=0.380 Sum_probs=48.2
Q ss_pred ccccccccceEEEEEEEECCCCCceeee-e-eceeEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceeeEEEE
Q 003615 703 TTLIGLTFGGYLRSKIKCTKCHGKSERQ-E-RMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEKAKKK 780 (807)
Q Consensus 703 ~siI~~lF~Gkl~s~I~C~~C~~vS~~~-E-~f~~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~A~K~ 780 (807)
...+.++|.-...=...|..||+..... . ....++=-+| .|- .+....---|.+|+.+. ..++
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~p-----------dwh---PLnA~h~~pCn~C~~ks-Q~rk 184 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIP-----------DWH---PLNAVHFGPCNSCNSKS-QRRK 184 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCC-----------CCC---cccccccCCCcccCChH-HhHh
Confidence 4568999999999999999999874321 1 0111111112 111 11111113599998754 4567
Q ss_pred EEeccccceeEEEE
Q 003615 781 LTIVEAPNILTIAL 794 (807)
Q Consensus 781 ~~I~~lP~~LIIqL 794 (807)
+.+.++|+++++|+
T Consensus 185 Mvlekv~~vfmLHF 198 (275)
T PF15499_consen 185 MVLEKVPPVFMLHF 198 (275)
T ss_pred hhhhcCchhhhhhh
Confidence 89999999999985
No 47
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=83.95 E-value=0.31 Score=40.44 Aligned_cols=45 Identities=20% Similarity=0.445 Sum_probs=37.4
Q ss_pred CcCCCCc----ccccccccCccceecChhhhhhhcchhhhccCCCCCccc
Q 003615 74 QCAVCFS----PTTTRCARCKAVRYCSGKCQIVHWRQGHKDECQPPSISH 119 (807)
Q Consensus 74 ~C~~C~~----~~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C~~~~~~~ 119 (807)
.|..|++ .....|..|....|||++.=..|.. .|+..|..++...
T Consensus 1 ~Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e-~H~~~c~~LRqvN 49 (55)
T PF13824_consen 1 LCPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYE-EHRQLCERLRQVN 49 (55)
T ss_pred CCCCCccccccccCCcCCCCCCcCccCHHHHHHhHH-HHHHHHHHHHHhc
Confidence 4778877 4578899999999999999888888 7999998776643
No 48
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=80.53 E-value=0.97 Score=33.02 Aligned_cols=28 Identities=46% Similarity=0.997 Sum_probs=21.8
Q ss_pred CCcCCCCcccccccccCccceecChhhhh
Q 003615 73 PQCAVCFSPTTTRCARCKAVRYCSGKCQI 101 (807)
Q Consensus 73 ~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~ 101 (807)
..|..|+..+.-+|.+|... |||.+|-+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~~~-~CSl~C~k 30 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCGAR-YCSLACYK 30 (30)
T ss_dssp EEETSSSSEESEE-TTT--E-ESSHHHHH
T ss_pred CCCccCcCCCEEECCCcCCc-eeCcEeEC
Confidence 47999999889999999986 99999964
No 49
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=74.72 E-value=1.4 Score=45.08 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=16.5
Q ss_pred cccccccccCCCccchHHHHHHHhc
Q 003615 582 ELQPCGLINCGNSCYANVVLQCLAF 606 (807)
Q Consensus 582 ~lgp~GL~NLGNTCYmNSVLQ~Lfs 606 (807)
...++|+-|.+|+|++|+++|.+-.
T Consensus 30 ~~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 30 KMEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp --EEE----SSSTHHHHHHHHHHHH
T ss_pred ceEEecCCCCCCChHHHHHHHHHHH
Confidence 3456799999999999999999853
No 50
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=73.40 E-value=8 Score=43.20 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=40.7
Q ss_pred cccccCCCccchHHHHHHHhcChh-HHHHHhhcccccccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhcccC
Q 003615 586 CGLINCGNSCYANVVLQCLAFTPP-LTAYFLQGLHSKECAKKDWCFTCELENLILRAKDGKSPLSPIGILSRLQSIGSQL 664 (807)
Q Consensus 586 ~GL~NLGNTCYmNSVLQ~LfsiP~-Fr~~ll~~~~~~~~~~~~~~~l~qL~kLf~~l~s~~~~IsP~~fl~~L~k~~~~F 664 (807)
+=|.=.-|+||+||++=+|-++.. |+.. .++.++..+..+ .|..|...+-. ....
T Consensus 103 ~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-------------------~l~~aw~~f~~G----~~~~fVa~~Ya-~~~~ 158 (320)
T PF08715_consen 103 RVLKQSDNNCWVNAACLQLQALKIKFKSP-------------------GLDEAWNEFKAG----DPAPFVAWCYA-STNA 158 (320)
T ss_dssp EEE---TTTHHHHHHHHHHTTST--BSSH-------------------HHHHHHHHHHTT------HHHHHHHHH-HTT-
T ss_pred EEEEecCCCcHHHHHHHHHHhcCCccCCH-------------------HHHHHHHHHhCC----ChHHHHHHHHH-HcCC
Confidence 334455699999999988765543 3321 223333333332 56677766643 3456
Q ss_pred CCCccccHHHHHHHHHHHHH
Q 003615 665 GNGREEDAHEFLRYAIDTMQ 684 (807)
Q Consensus 665 ~~~~QQDA~EFL~~LLd~L~ 684 (807)
..|+--||+++|..||+.++
T Consensus 159 ~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 159 KKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp -TTS---HHHHHHHHHTTB-
T ss_pred CCCCCcCHHHHHHHHHHhcc
Confidence 67888999999999998765
No 51
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=67.07 E-value=2.3 Score=41.82 Aligned_cols=35 Identities=34% Similarity=0.771 Sum_probs=30.8
Q ss_pred CCCCCcCCCCcccccccccCccceecChhhhhhhcc
Q 003615 70 PQHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWR 105 (807)
Q Consensus 70 ~~~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~ 105 (807)
|....|+.||-.....|..|.. .||+..|-..|-.
T Consensus 116 P~r~fCaVCG~~S~ysC~~CG~-kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCGYDSKYSCVNCGT-KYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcCCCchhHHHhcCC-ceeechhhhhccc
Confidence 6678999999889999999987 5999999987765
No 52
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=58.35 E-value=7.6 Score=33.36 Aligned_cols=36 Identities=22% Similarity=0.544 Sum_probs=29.1
Q ss_pred CceecCCCCceeeEEEEEEec--cccceeEEEEeeeee
Q 003615 764 NKYKCDRCKSYEKAKKKLTIV--EAPNILTIALKRFQV 799 (807)
Q Consensus 764 Nky~CekC~~k~~A~K~~~I~--~lP~~LIIqLKRF~~ 799 (807)
|++.|++|+...-..|..... .+.+++=||.+||..
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 467799999877667776665 688999999999974
No 53
>PRK12495 hypothetical protein; Provisional
Probab=54.14 E-value=15 Score=38.88 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCcCCCCcccc
Q 003615 26 IIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPTT 83 (807)
Q Consensus 26 ~~~~kwr~a~~~~ee~~rl~~~a~ee~~~~e~e~~~~~~~~v~~~~~~~C~~C~~~~~ 83 (807)
.||+||.+..++.+.++++..+.-... .+....|..||.+-.
T Consensus 12 kLREKye~d~~~R~~~~~ma~lL~~ga----------------tmsa~hC~~CG~PIp 53 (226)
T PRK12495 12 KLREKYEQDEQKREATERMSELLLQGA----------------TMTNAHCDECGDPIF 53 (226)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhc----------------ccchhhcccccCccc
Confidence 577777777777777776555442111 124679999998755
No 54
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.99 E-value=4.4 Score=31.94 Aligned_cols=31 Identities=39% Similarity=0.876 Sum_probs=24.5
Q ss_pred CCCCcCCCCccc--ccccccCc-cceecChhhhh
Q 003615 71 QHPQCAVCFSPT--TTRCARCK-AVRYCSGKCQI 101 (807)
Q Consensus 71 ~~~~C~~C~~~~--~~rCs~Ck-~v~YCs~~CQ~ 101 (807)
....|..||.+. .++-.+|- .|.|||..|..
T Consensus 7 p~K~C~~C~rpf~WRKKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 7 PSKICPVCGRPFTWRKKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CCCcCcccCCcchHHHHHHHhchhhccHHHHhcc
Confidence 356899999986 45667775 78999999964
No 55
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=50.83 E-value=7.1 Score=38.43 Aligned_cols=37 Identities=30% Similarity=0.983 Sum_probs=28.5
Q ss_pred CCCcCCCCccc-ccccccCccceecChhhhhhhcchhhhc--cCCC
Q 003615 72 HPQCAVCFSPT-TTRCARCKAVRYCSGKCQIVHWRQGHKD--ECQP 114 (807)
Q Consensus 72 ~~~C~~C~~~~-~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~--~C~~ 114 (807)
...|.-|.+.. ..+|..|.. .|||-.| |+ .||. .|++
T Consensus 5 t~tC~ic~e~~~KYKCpkC~v-PYCSl~C----fK-iHk~tPq~~~ 44 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCSV-PYCSLPC----FK-IHKSTPQCET 44 (157)
T ss_pred eeeehhhhcchhhccCCCCCC-ccccchh----hh-hccCCccccc
Confidence 34688887654 889999986 5999999 88 7888 5543
No 56
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=49.06 E-value=14 Score=43.30 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=19.4
Q ss_pred ccccccCCCccchHHHHHHHhcCh
Q 003615 585 PCGLINCGNSCYANVVLQCLAFTP 608 (807)
Q Consensus 585 p~GL~NLGNTCYmNSVLQ~LfsiP 608 (807)
..|++-.-|+||+||.|=++|.-.
T Consensus 368 ~kgiqgh~nscyldstlf~~f~f~ 391 (724)
T KOG3556|consen 368 IKGIQGHPNSCYLDSTLFKPFEFD 391 (724)
T ss_pred cccccCCcchhhcccccccccccc
Confidence 468888889999999998887533
No 57
>PRK01343 zinc-binding protein; Provisional
Probab=46.74 E-value=14 Score=31.06 Aligned_cols=28 Identities=29% Similarity=0.727 Sum_probs=22.3
Q ss_pred CCCCcCCCCcccccccccCccceecChhhhhhh
Q 003615 71 QHPQCAVCFSPTTTRCARCKAVRYCSGKCQIVH 103 (807)
Q Consensus 71 ~~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~ 103 (807)
....|..|+++... ....|||+.|+..|
T Consensus 8 p~~~CP~C~k~~~~-----~~rPFCS~RC~~iD 35 (57)
T PRK01343 8 PTRPCPECGKPSTR-----EAYPFCSERCRDID 35 (57)
T ss_pred CCCcCCCCCCcCcC-----CCCcccCHHHhhhh
Confidence 35689999998653 35589999999988
No 58
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=25 Score=38.89 Aligned_cols=43 Identities=23% Similarity=0.610 Sum_probs=34.5
Q ss_pred CCCCc--CCCCcccccccccCc-----cceecChhhhhhhcchhhhccCCC
Q 003615 71 QHPQC--AVCFSPTTTRCARCK-----AVRYCSGKCQIVHWRQGHKDECQP 114 (807)
Q Consensus 71 ~~~~C--~~C~~~~~~rCs~Ck-----~v~YCs~~CQ~~~W~~~HK~~C~~ 114 (807)
....| ..|++.+.++|..|- ..+.|+.+|-+.-|. .||+.=..
T Consensus 5 ~~~~c~~~~c~~~a~l~Cp~c~~~~i~~~~fc~q~cf~~~w~-~hK~~h~~ 54 (369)
T KOG2738|consen 5 AKISCEGLQCGSEASLQCPTCLKLGIKSAYFCAQECFKNSWL-SHKKLHRK 54 (369)
T ss_pred hhceeeccccCChhhccCchhhhcCCCcccccCchhhhcchh-hhhhhccc
Confidence 34567 679998889998884 357999999999999 79987643
No 59
>PF14353 CpXC: CpXC protein
Probab=44.17 E-value=23 Score=33.83 Aligned_cols=49 Identities=16% Similarity=0.426 Sum_probs=26.7
Q ss_pred EEEECCCCCceeeeeeceeEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCceee
Q 003615 717 KIKCTKCHGKSERQERMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSYEK 776 (807)
Q Consensus 717 ~I~C~~C~~vS~~~E~f~~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k~~ 776 (807)
+++|..|++..... -+. +++.... .++.+..+..+... |.|+.||....
T Consensus 1 ~itCP~C~~~~~~~-v~~--~I~~~~~----p~l~e~il~g~l~~----~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-VWT--SINADED----PELKEKILDGSLFS----FTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEE-EEe--EEcCcCC----HHHHHHHHcCCcCE----EECCCCCCcee
Confidence 37899999875432 222 2222211 12333444444433 99999998654
No 60
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=43.54 E-value=13 Score=31.51 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=23.7
Q ss_pred CCCcCCCCcccccccccCccceecChhhhhhhcchhhhc
Q 003615 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWRQGHKD 110 (807)
Q Consensus 72 ~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~ 110 (807)
.+.|.+||++-.. .-.|||.+|+..-++ .+|+
T Consensus 3 HkHC~~CG~~Ip~------~~~fCS~~C~~~~~k-~qk~ 34 (59)
T PF09889_consen 3 HKHCPVCGKPIPP------DESFCSPKCREEYRK-RQKR 34 (59)
T ss_pred CCcCCcCCCcCCc------chhhhCHHHHHHHHH-HHHH
Confidence 5689999987543 246999999988777 4443
No 61
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=36.96 E-value=75 Score=27.51 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=33.7
Q ss_pred ccccchhhhhhhheecchhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003615 5 GDLGFSILVLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILA 48 (807)
Q Consensus 5 ~~l~~~~~~~~~~~~~p~lg~~~~~kwr~a~~~~ee~~rl~~~a 48 (807)
|-.|||-.+-+...++|++.+++...|++..--+++.+++.+.+
T Consensus 13 GgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aRea 56 (67)
T COG3114 13 GGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREA 56 (67)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788887777777788889999998888877777777655444
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=35.73 E-value=1.2e+02 Score=27.45 Aligned_cols=15 Identities=33% Similarity=0.857 Sum_probs=11.2
Q ss_pred ccCCCCCCcCCCCcc
Q 003615 67 VYVPQHPQCAVCFSP 81 (807)
Q Consensus 67 v~~~~~~~C~~C~~~ 81 (807)
+-......|+.|+++
T Consensus 73 v~i~~~~~C~vC~k~ 87 (109)
T PF10367_consen 73 VVITESTKCSVCGKP 87 (109)
T ss_pred EEECCCCCccCcCCc
Confidence 444567789999986
No 63
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=32.04 E-value=19 Score=39.88 Aligned_cols=36 Identities=39% Similarity=0.934 Sum_probs=27.9
Q ss_pred CCcCCCCcc-cccccccCccceecChhhhhhhcchhhhccCCC
Q 003615 73 PQCAVCFSP-TTTRCARCKAVRYCSGKCQIVHWRQGHKDECQP 114 (807)
Q Consensus 73 ~~C~~C~~~-~~~rCs~Ck~v~YCs~~CQ~~~W~~~HK~~C~~ 114 (807)
-.|..|++. ....|.||... ||+-.|- + .|+..|..
T Consensus 8 ~~C~ic~vq~~~YtCPRCn~~-YCsl~CY----r-~h~~~CsE 44 (383)
T KOG4317|consen 8 LACGICGVQKREYTCPRCNLL-YCSLKCY----R-NHKHSCSE 44 (383)
T ss_pred eeccccccccccccCCCCCcc-ceeeeee----c-CCCccchH
Confidence 368888864 46899999985 9999984 5 57777854
No 64
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.20 E-value=43 Score=28.86 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=23.8
Q ss_pred eecCCCCceeeEEEEEEec--cccceeEEEEeeeee
Q 003615 766 YKCDRCKSYEKAKKKLTIV--EAPNILTIALKRFQV 799 (807)
Q Consensus 766 y~CekC~~k~~A~K~~~I~--~lP~~LIIqLKRF~~ 799 (807)
|.|++|+...-..++.+.. .+-.++=||.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 7899999865544444433 356678889999874
No 65
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=28.99 E-value=77 Score=29.04 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=33.1
Q ss_pred hhhhheecchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCcCCCCccc-------ccc
Q 003615 13 VLVVSFVFPAIALIIRRKWRRAVARKEEIKRLLILASEEAARAEFEASYGYSTTVYVPQHPQCAVCFSPT-------TTR 85 (807)
Q Consensus 13 ~~~~~~~~p~lg~~~~~kwr~a~~~~ee~~rl~~~a~ee~~~~e~e~~~~~~~~v~~~~~~~C~~C~~~~-------~~r 85 (807)
|-+.+=|.|-.|..+|.+|+.-.+ .++ +...|..|+++. ...
T Consensus 7 vG~aGrfGpRYG~~~Rrrv~~ie~----~~~---------------------------~~~~Cp~C~~~~VkR~a~GIW~ 55 (89)
T COG1997 7 VGIAGRFGPRYGSKLRRRVKEIEA----QQR---------------------------AKHVCPFCGRTTVKRIATGIWK 55 (89)
T ss_pred eccCcccccccchHHHHHHHHHHH----HHh---------------------------cCCcCCCCCCcceeeeccCeEE
Confidence 344566778889999888654222 222 367899999864 466
Q ss_pred cccCccc
Q 003615 86 CARCKAV 92 (807)
Q Consensus 86 Cs~Ck~v 92 (807)
|..|...
T Consensus 56 C~kCg~~ 62 (89)
T COG1997 56 CRKCGAK 62 (89)
T ss_pred cCCCCCe
Confidence 8877765
No 66
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.93 E-value=8.4 Score=31.24 Aligned_cols=29 Identities=41% Similarity=0.992 Sum_probs=24.4
Q ss_pred CCCcCCCCccc--ccccccCc-cceecChhhh
Q 003615 72 HPQCAVCFSPT--TTRCARCK-AVRYCSGKCQ 100 (807)
Q Consensus 72 ~~~C~~C~~~~--~~rCs~Ck-~v~YCs~~CQ 100 (807)
...|..|+.+. .++-.+|- .|.|||..|.
T Consensus 12 ~KICpvCqRPFsWRkKW~~cWDeVKyCSeRCr 43 (54)
T COG4338 12 DKICPVCQRPFSWRKKWARCWDEVKYCSERCR 43 (54)
T ss_pred hhhhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999986 56678886 7899999997
No 67
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=27.73 E-value=26 Score=27.84 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCCcCCCCcccccccccCccceecChhhhhhhcc
Q 003615 72 HPQCAVCFSPTTTRCARCKAVRYCSGKCQIVHWR 105 (807)
Q Consensus 72 ~~~C~~C~~~~~~rCs~Ck~v~YCs~~CQ~~~W~ 105 (807)
...|..|.|.-.. .--..-|||.+|..+|+.
T Consensus 6 ~~yC~~Cdk~~~~---~~~~~lYCSe~Cr~~D~~ 36 (43)
T PF12855_consen 6 NDYCIVCDKQIDP---PDDGSLYCSEECRLKDQE 36 (43)
T ss_pred hhHHHHhhccccC---CCCCccccCHHHHhHhhh
Confidence 3467777764322 334557999999999997
No 68
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=26.39 E-value=38 Score=24.74 Aligned_cols=23 Identities=39% Similarity=0.910 Sum_probs=13.4
Q ss_pred CCCcCCCCccc-------ccccccCcccee
Q 003615 72 HPQCAVCFSPT-------TTRCARCKAVRY 94 (807)
Q Consensus 72 ~~~C~~C~~~~-------~~rCs~Ck~v~Y 94 (807)
.+.|..||.+. .++|..|....|
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~~~y 32 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGHEHY 32 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-EE-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcCEeC
Confidence 57899999752 688999987766
No 69
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=23.79 E-value=40 Score=41.00 Aligned_cols=39 Identities=36% Similarity=0.676 Sum_probs=29.0
Q ss_pred CCcCCCC----cccccccccCcc-------ceecChhhhhhhcchhhhccC
Q 003615 73 PQCAVCF----SPTTTRCARCKA-------VRYCSGKCQIVHWRQGHKDEC 112 (807)
Q Consensus 73 ~~C~~C~----~~~~~rCs~Ck~-------v~YCs~~CQ~~~W~~~HK~~C 112 (807)
+.|+.|- +++...|-.|.. .++|+.+|=+..|+ .||..=
T Consensus 60 ~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~-~Hk~~h 109 (606)
T PLN03144 60 RKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWR-HHRVLH 109 (606)
T ss_pred ccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHH-HHHHHH
Confidence 3455553 566777877742 57899999999999 798764
No 70
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=22.93 E-value=1.3e+02 Score=32.98 Aligned_cols=41 Identities=34% Similarity=0.550 Sum_probs=26.4
Q ss_pred eeccccchhhhhhhheecchhHH-HHHHHHHHHHHhHHHHHHHHH
Q 003615 3 VTGDLGFSILVLVVSFVFPAIAL-IIRRKWRRAVARKEEIKRLLI 46 (807)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~p~lg~-~~~~kwr~a~~~~ee~~rl~~ 46 (807)
|-+-.||.-++||+++ .||. ++.+|-++-++.+|+.++++.
T Consensus 73 v~~~~G~~~v~liLgl---~ig~p~~krkek~~iee~e~~~q~~e 114 (279)
T PF07271_consen 73 VGGSAGLLAVALILGL---AIGIPIYKRKEKRMIEEKEEHEQLAE 114 (279)
T ss_pred ccchhhHHHHHHHHHH---hhcchhhhhhHHHHHHHHHHHHHHHH
Confidence 5567888888887776 6666 344455566666666555443
No 71
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.04 E-value=1.6e+02 Score=28.82 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=26.4
Q ss_pred EEEEEEEECCCCCceeeee-eceeEEeecCCCCCCHHHHHHhhhcceeeCCCCceecCCCCce
Q 003615 713 YLRSKIKCTKCHGKSERQE-RMMDLTVEIEGDIGNLEEALRRYTGTEILDGENKYKCDRCKSY 774 (807)
Q Consensus 713 kl~s~I~C~~C~~vS~~~E-~f~~LsL~Ip~~~~SLed~L~~f~~~E~LdgdNky~CekC~~k 774 (807)
...-...|..|++.....+ ++. | ++ .+... -.+.||.+... +.|+.||+.
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~-~----~~---~~~~~--~~~~~~~~~~~--~~CP~Cgs~ 116 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKES-L----DE---EIREA--IHFIPEVVHAF--LKCPKCGSR 116 (135)
T ss_pred ecceEEECCCCCCEEeccccccc-c----cc---ccccc--ccccccccccC--cCCcCCCCC
Confidence 3445789999996644321 111 1 11 11111 23456655432 679999975
Done!