BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003617
(807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/799 (58%), Positives = 596/799 (74%), Gaps = 3/799 (0%)
Query: 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDV 64
NPF + + L G+ K+++L L+ R +LP+SI++LLE+A+RNCD+F VK +D+
Sbjct: 22 NPFAYLAEPLDPAQPGK--KFFNLNKLDYSRYGRLPFSIRVLLEAAVRNCDKFLVKKEDI 79
Query: 65 EKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPV 124
E I++W T +E+PFKPARV+LQDFTGVP+VVD A MRDA+ KLGGD KINP+ PV
Sbjct: 80 ENILNWNVTQHMNIEVPFKPARVILQDFTGVPSVVDFAAMRDAVKKLGGDPEKINPICPV 139
Query: 125 DLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 184
DLVIDHS+QVD R +++Q N + EF RN+ERF FLKWGS AF NM ++PPGSGI+HQV
Sbjct: 140 DLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSKAFRNMRIIPPGSGIIHQV 199
Query: 185 NLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLP 244
NLEYL RVVF+ +G YPDS+VGTDSHTTMID MLGQP+SMVLP
Sbjct: 200 NLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLP 259
Query: 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMS 304
V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM
Sbjct: 260 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 319
Query: 305 PEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLE 364
PEYGAT FFPVD V+++YL TGR + V I YL+A MF DYS+P + ++ +E
Sbjct: 320 PEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQAVGMFRDYSDPSQDPDFTQVVE 379
Query: 365 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 424
L+L+ VVPC SGPKRP D+V +++MK D+ +CL + GFKGF + ++ + F ++ +
Sbjct: 380 LDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPDHHNDHKTFIYNDS 439
Query: 425 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484
L HG VVIAAITS TNTSNPSVMLGA L+AKKA + GL VKP++KTSL+PGSGVVT
Sbjct: 440 EFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTY 499
Query: 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEG 544
YL+ SG+ YL+ LGF +VGYG TCIGNSG + + V AIT+ D+VA VLSGNRNFEG
Sbjct: 500 YLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEG 559
Query: 545 RVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVV 604
RVHP TRANYLASPPLV+AYA+AG++ IDFE EP+G G+++FLRDIWP+ EE+ V
Sbjct: 560 RVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNAKGQQVFLRDIWPTREEIQAVE 619
Query: 605 QKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPH 664
++ V+P MF Y+ I N WN L+ PS LY W+PKSTYI PP+F+++T+ P
Sbjct: 620 RQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNPKSTYIKSPPFFENLTLDLQPPK 679
Query: 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 724
+ AY LLN GDS+TTDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND IMA
Sbjct: 680 SIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAIMA 739
Query: 725 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSS 784
RGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA RY+ EGH ++LAG EYGSGSS
Sbjct: 740 RGTFANIRLLNRFLNKQ-APQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYGSGSS 798
Query: 785 RDWAAKGPMLLVNPCIMSD 803
RDWAAKGP LL ++++
Sbjct: 799 RDWAAKGPFLLGIKAVLAE 817
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/799 (58%), Positives = 596/799 (74%), Gaps = 3/799 (0%)
Query: 5 NPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDV 64
NPF + + L G+ K+++L L D R +LP+SI++LLE+AIRNCDEF VK +D+
Sbjct: 2 NPFAHLAEPLDPVQPGK--KFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDI 59
Query: 65 EKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPV 124
E I+ W T K +E+PFKPARV+LQDFTGVPAVVD A MRDA+ KLGGD KINP+ P
Sbjct: 60 ENILHWNVTQHKNIEVPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPA 119
Query: 125 DLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQV 184
DLVIDHS+QVD R +++Q N + EF RN+ERF FLKWGS AFHNM ++PPGSGI+HQV
Sbjct: 120 DLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQV 179
Query: 185 NLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSMVLP 244
NLEYL RVVF+ +G YPDS+VGTDSHTTMID MLGQP+SMVLP
Sbjct: 180 NLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239
Query: 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMS 304
V+G++L GK VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM
Sbjct: 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 299
Query: 305 PEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLE 364
PEYGAT FFPVD V++ YL TGR ++ + I+ YL+A MF D+++P + ++ +E
Sbjct: 300 PEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVE 359
Query: 365 LNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 424
L+L+ VVPC SGPKRP D+V +++MK D+ +CL + GFKGF + E+ + F + T
Sbjct: 360 LDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNT 419
Query: 425 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484
L HG VVIAAITSCTNTSNPSVMLGA L+AKKA + GL V P+IKTSL+PGSGVVT
Sbjct: 420 EFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTY 479
Query: 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEG 544
YLQ SG+ YL+ LGF +VGYGC TCIGNSG + + V AIT+ D+VA VLSGNRNFEG
Sbjct: 480 YLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEG 539
Query: 545 RVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVV 604
RVHP TRANYLASPPLV+AYA+AG++ IDFE EP+GV G+++FL+DIWP+ +E+ V
Sbjct: 540 RVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVE 599
Query: 605 QKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPH 664
++ V+P MFK Y+ I N WN L+ PS L+ W+ KSTYI PP+F+++T+ P
Sbjct: 600 RQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPK 659
Query: 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMA 724
+ AY LLN GDS+TTDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND +MA
Sbjct: 660 SIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMA 719
Query: 725 RGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSS 784
RGTFANIRL+N+ LN + P+TIH+P+GE L VFDAA RY+ G ++LAG EYG+GSS
Sbjct: 720 RGTFANIRLLNRFLNKQ-APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSS 778
Query: 785 RDWAAKGPMLLVNPCIMSD 803
RDWAAKGP LL ++++
Sbjct: 779 RDWAAKGPFLLGIKAVLAE 797
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 208/756 (27%), Positives = 300/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG GSSR+ +A P L I++
Sbjct: 626 HGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIIT 661
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 210/759 (27%), Positives = 301/759 (39%), Gaps = 158/759 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG P K+
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAG------PWLKF---------- 579
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT------IHIPTGEKLSVFDAAMR 763
RG NI N LL G + + + T E V D A
Sbjct: 580 ---------------RGHLDNIS--NNLLIGAINSENRKANSVRNAVTQEFGPVPDTARY 622
Query: 764 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
YK G V++ YG GSSR+ +A P L I++
Sbjct: 623 YKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIIT 661
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 208/756 (27%), Positives = 299/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
S Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG GSSR+ A P L I++
Sbjct: 626 HGIRWVVIGDENYGEGSSREHRALEPRFLGGRAIIT 661
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 207/756 (27%), Positives = 300/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 300
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 301 DPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 343
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 344 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 386
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 387 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 440
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 441 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 495
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG A P S +
Sbjct: 496 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVAVSPTSQRLQL 539
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 540 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 577
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 578 FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 624
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG G+SR+ +A P L I++
Sbjct: 625 HGIRWVVIGDENYGEGASREHSALEPRHLGGRAIIT 660
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 207/756 (27%), Positives = 299/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG GSSR+ +A P L I++
Sbjct: 626 HGIRWVVIGDENYGEGSSREHSALEPRHLGGRAIIT 661
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 206/756 (27%), Positives = 299/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 40 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 92
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 93 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 138
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 139 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 189
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 190 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 249
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 250 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 301
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 302 DPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 344
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 345 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 387
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 388 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 441
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 442 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 496
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 497 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 540
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 541 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 578
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 579 FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 625
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG G+SR+ +A P L I++
Sbjct: 626 HGIRWVVIGDENYGEGASREHSALEPRHLGGRAIIT 661
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 206/756 (27%), Positives = 299/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 300
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 301 DPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 343
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 344 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 386
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 387 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 440
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 441 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 495
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 496 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 539
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 540 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 577
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 578 FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 624
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG G+SR+ +A P L I++
Sbjct: 625 HGIRWVVIGDENYGEGASREHSALEPRHLGGRAIIT 660
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 206/756 (27%), Positives = 299/756 (39%), Gaps = 152/756 (20%)
Query: 65 EKIIDWETTSPKQVEIP-------FKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNK 117
EKI+ P EI +P RV +QD T A+ L + + K+
Sbjct: 39 EKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAM--LQFISSGLPKVA----- 91
Query: 118 INPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRR----NKERFAFLKWGSNAFHNMLV 173
VP + DH ++ Q E + RR N+E + FL + A + +
Sbjct: 92 ----VPSTIHCDHLIEA---------QLGGEKDLRRAKDINQEVYNFLA-TAGAKYGVGF 137
Query: 174 VPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXX 233
PGSGI+HQ+ LE + G+L ++GTDSHT
Sbjct: 138 WRPGSGIIHQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDV 188
Query: 234 MLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELS 293
M G P + P V+G KL+G L + D++L V +L G G VE++G G+ +S
Sbjct: 189 MAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSIS 248
Query: 294 LADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEP 353
ATI NM E GAT FP +H +YL TGR+D E F D+ P
Sbjct: 249 CTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADE--------FKDHLVP 300
Query: 354 QSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQ 413
Y +E+NL E+ P ++GP P P+ E+ G KE
Sbjct: 301 DPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEV---------------GSVAEKE-- 343
Query: 414 SKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKT 473
G P +R + I SCTN+S + AA VAK+A GL+ K +
Sbjct: 344 ---------GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QF 386
Query: 474 SLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIG--NSGDIDDAVAAAITENDIV 531
++ PGS + ++ G + L +G ++ C CIG + DI I
Sbjct: 387 TITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTI------ 440
Query: 532 AAAVLSGNRNFEGR--VHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIF 589
V S NRNF GR +P T A ++ SP +V A A+AG++ + ET+ + GKDGKK
Sbjct: 441 ---VTSYNRNFTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFK 495
Query: 590 LRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649
L P ++E+ D + TY+ K + SG P S +
Sbjct: 496 LEA--PDADELPRAEF-----DPGQDTYQHPPKDS---------SGQRVDVSPTSQRLQL 539
Query: 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRD 709
F ++ L+ TTDHIS AG K
Sbjct: 540 LEPFDKWDGK-----DLEDLQILIKVKGKCTTDHISAAGPWLK----------------- 577
Query: 710 FNSYGSRRGNDEIMARGTFANIRLVNKLLNG---EVGPKTIHIPTGEKLSVFDAAMRYKN 766
F + N+ ++ N R N + N E GP V D A YK
Sbjct: 578 FRGHLDNISNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQ 624
Query: 767 EGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802
G V++ YG GSS++ +A P L I++
Sbjct: 625 HGIRWVVIGDENYGEGSSQEHSALEPRHLGGRAIIT 660
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 137 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 183
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 184 ALDVEQI 190
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 130 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 176
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 177 ALDVEQI 183
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 152 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 198
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 199 ALDVEQI 205
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 81/401 (20%), Positives = 136/401 (33%), Gaps = 107/401 (26%)
Query: 176 PGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 234
PG G++H +L R ML PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLV------------LTVTQMLRKHGVVGMFV 282
+ M + +P V + GK++ G+T DLV LTV + +K+ G +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 283 EFYGEGMSELSLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 331
E EG+ +L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 332 -----DTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV-PCVSGPKRPHDRVP 385
+ +E +L ++ ++ + V ++++L ++ P + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEADADAEYAAV----IDIDLADIKEPILCAPNDPDDARP 693
Query: 386 LNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTS 445
L+ ++ + K+ E I SC
Sbjct: 694 LSAVQGE----------------------KIDE-----------------VFIGSCMTNI 714
Query: 446 NPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505
G L A K L + W+ AP + + L G G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRV 546
GC+ C+GN + D A V + RNF R+
Sbjct: 768 GCSLCMGNQARVADG-----------ATVVSTSTRNFPNRL 797
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 133 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 179
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 180 ALDVEQI 186
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 130 MLSRHSFNALLKTLEEPP--EHVKF--LLATTDPQ--KLPVTI-------LSRCLQFHLK 176
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 177 ALDVEQI 183
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Query: 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVK 60
M + + F ++LKTL+ P E K+ L A DP+ KLP +I + C +F +K
Sbjct: 152 MLSRHSFNALLKTLEEPP--EHVKF--LLATADPQ--KLPVTI-------LSRCLQFHLK 198
Query: 61 SKDVEKI 67
+ DVE+I
Sbjct: 199 ALDVEQI 205
>pdb|3Q8D|A Chain A, E. Coli Reco Complex With Ssb C-terminus
pdb|3Q8D|B Chain B, E. Coli Reco Complex With Ssb C-terminus
Length = 242
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 495 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGR 545
L HLG+ G T C G+ +DD + E A+V+ N+ F GR
Sbjct: 139 LGHLGY---GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGR 186
>pdb|4I1D|A Chain A, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|B Chain B, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|C Chain C, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
pdb|4I1D|D Chain D, The Crystal Structure Of An Abc Transporter
Substrate-Binding Protein From Bradyrhizobium Japonicum
Usda 110
Length = 324
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 595 PSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSG 635
PS++++ + + +PD + A + G P+W+ + P+G
Sbjct: 25 PSAKKLGITINQDSIPDAWPAIKTQVGSGKPIWDVVDTPTG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,131,173
Number of Sequences: 62578
Number of extensions: 1098700
Number of successful extensions: 2331
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2259
Number of HSP's gapped (non-prelim): 45
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)