Query 003617
Match_columns 807
No_of_seqs 357 out of 2666
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0452 RNA-binding translatio 100.0 3E-260 6E-265 2096.9 47.0 799 4-806 6-804 (892)
2 PLN00070 aconitate hydratase 100.0 5E-255 1E-259 2199.4 66.6 803 4-807 42-845 (936)
3 PTZ00092 aconitate hydratase-l 100.0 2E-252 5E-257 2174.6 67.0 797 4-807 13-809 (898)
4 TIGR01341 aconitase_1 aconitat 100.0 3E-250 7E-255 2152.4 64.4 778 22-807 2-786 (876)
5 PRK12881 acnA aconitate hydrat 100.0 2E-249 3E-254 2153.0 66.0 788 4-807 3-797 (889)
6 PRK09277 aconitate hydratase; 100.0 2E-248 5E-253 2139.1 67.7 790 1-807 1-796 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 1E-244 3E-249 2098.1 62.7 749 22-807 12-769 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 2E-241 4E-246 2048.0 56.0 764 11-807 6-770 (861)
9 TIGR01340 aconitase_mito aconi 100.0 2E-168 4E-173 1463.3 52.2 621 59-807 18-660 (745)
10 PRK07229 aconitate hydratase; 100.0 4E-152 8E-157 1319.7 46.9 556 60-807 2-561 (646)
11 TIGR01342 acon_putative aconit 100.0 4E-150 9E-155 1300.5 46.6 560 62-807 1-567 (658)
12 KOG0453 Aconitase/homoaconitas 100.0 4E-137 8E-142 1137.2 39.5 624 60-807 58-690 (778)
13 TIGR00139 h_aconitase homoacon 100.0 2E-135 3E-140 1177.5 44.4 585 61-807 2-620 (712)
14 PRK11413 putative hydratase; P 100.0 1E-134 3E-139 1175.0 44.6 602 60-807 34-665 (751)
15 cd01586 AcnA_IRP Aconitase A c 100.0 3E-132 7E-137 1085.9 37.3 400 86-570 1-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 8E-123 2E-127 1036.7 42.0 452 60-570 2-459 (465)
17 PRK12466 isopropylmalate isome 100.0 1E-122 2E-127 1037.0 42.3 452 60-570 3-461 (471)
18 PRK05478 isopropylmalate isome 100.0 5E-122 1E-126 1031.7 41.7 452 60-570 2-459 (466)
19 PF00330 Aconitase: Aconitase 100.0 1E-122 2E-127 1040.0 33.5 456 62-568 1-465 (465)
20 cd01584 AcnA_Mitochondrial Aco 100.0 1E-120 2E-125 1005.0 38.8 409 86-570 1-412 (412)
21 cd01583 IPMI 3-isopropylmalate 100.0 1E-116 3E-121 966.0 38.5 380 86-570 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 3E-116 7E-121 969.4 40.3 405 62-571 1-409 (412)
23 PRK00402 3-isopropylmalate deh 100.0 6E-116 1E-120 968.7 41.0 406 60-570 2-411 (418)
24 TIGR02086 IPMI_arch 3-isopropy 100.0 7E-116 1E-120 966.6 39.4 405 61-571 1-408 (412)
25 cd01585 AcnA_Bact Aconitase ca 100.0 8E-116 2E-120 957.6 37.4 379 85-570 1-380 (380)
26 TIGR02083 LEU2 3-isopropylmala 100.0 9E-115 2E-119 957.3 41.4 409 61-571 1-414 (419)
27 COG0065 LeuC 3-isopropylmalate 100.0 3E-112 6E-117 913.2 37.0 409 61-570 3-416 (423)
28 cd01581 AcnB Aconitate hydrata 100.0 3E-107 6E-112 901.3 37.8 403 63-570 1-436 (436)
29 cd01582 Homoaconitase Homoacon 100.0 2E-106 4E-111 877.7 34.5 361 86-570 1-363 (363)
30 cd01351 Aconitase Aconitase ca 100.0 9E-102 2E-106 855.1 36.9 388 86-570 1-389 (389)
31 PRK09238 bifunctional aconitat 100.0 5.3E-99 1E-103 877.1 40.3 408 59-570 369-809 (835)
32 TIGR00117 acnB aconitate hydra 100.0 7.1E-98 2E-102 865.2 42.0 407 59-570 370-809 (844)
33 PLN00094 aconitate hydratase 2 100.0 2E-95 4E-100 842.4 39.2 408 59-570 442-883 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1.5E-57 3.2E-62 443.7 7.7 134 674-807 1-134 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 2.3E-47 4.9E-52 423.0 24.4 413 60-605 372-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 4.7E-37 1E-41 332.1 12.9 361 339-807 13-384 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 1.7E-30 3.8E-35 250.8 4.7 107 674-807 1-107 (149)
38 KOG0454 3-isopropylmalate dehy 99.9 8E-26 1.7E-30 245.4 4.6 420 60-569 66-498 (502)
39 PF00694 Aconitase_C: Aconitas 99.9 4.2E-26 9.2E-31 217.9 1.2 110 698-807 3-112 (131)
40 cd01579 AcnA_Bact_Swivel Bacte 99.9 1.4E-22 3E-27 191.8 2.8 86 674-807 1-86 (121)
41 TIGR02084 leud 3-isopropylmala 99.8 3.5E-22 7.6E-27 196.5 2.4 84 670-807 2-85 (156)
42 PRK14023 homoaconitate hydrata 99.8 5.4E-22 1.2E-26 197.1 3.2 85 670-807 3-87 (166)
43 PRK00439 leuD 3-isopropylmalat 99.8 5.7E-22 1.2E-26 196.6 2.9 85 669-807 2-86 (163)
44 COG0066 LeuD 3-isopropylmalate 99.8 5.7E-22 1.2E-26 197.8 2.5 92 668-807 8-100 (191)
45 TIGR02087 LEUD_arch 3-isopropy 99.8 7.8E-22 1.7E-26 193.8 2.3 84 670-807 2-85 (154)
46 PRK01641 leuD isopropylmalate 99.8 6.5E-21 1.4E-25 194.3 2.9 97 668-807 8-105 (200)
47 TIGR00171 leuD 3-isopropylmala 99.8 1E-20 2.2E-25 191.1 2.0 100 666-807 6-107 (188)
48 PLN00072 3-isopropylmalate iso 99.8 3.2E-20 7E-25 193.0 3.9 97 666-807 68-167 (246)
49 cd01674 Homoaconitase_Swivel H 99.7 2.3E-19 5.1E-24 169.6 1.8 82 675-807 2-83 (129)
50 cd00404 Aconitase_swivel Aconi 99.7 1.5E-18 3.3E-23 155.4 2.2 37 771-807 17-53 (88)
51 cd01577 IPMI_Swivel Aconatase- 99.7 8.8E-19 1.9E-23 157.9 0.6 37 771-807 19-55 (91)
52 cd01576 AcnB_Swivel Aconitase 99.6 5.4E-16 1.2E-20 148.3 3.7 36 772-807 53-100 (131)
53 PRK09238 bifunctional aconitat 99.5 9.5E-15 2.1E-19 172.9 4.9 96 664-807 163-270 (835)
54 TIGR00117 acnB aconitate hydra 99.2 5.2E-12 1.1E-16 149.7 5.3 92 667-807 167-271 (844)
55 PLN00094 aconitate hydratase 2 98.4 3.2E-07 7E-12 109.7 5.7 44 762-807 286-342 (938)
56 PF04412 DUF521: Protein of un 96.0 0.019 4.1E-07 65.4 8.1 69 431-507 288-356 (400)
57 COG1679 Predicted aconitase [G 93.9 0.15 3.2E-06 57.3 7.3 69 431-507 288-356 (403)
58 PF06434 Aconitase_2_N: Aconit 90.6 0.12 2.5E-06 53.3 1.4 31 761-792 46-76 (204)
59 cd01355 AcnX Putative Aconitas 89.7 0.73 1.6E-05 52.6 6.8 70 432-512 278-347 (389)
60 TIGR00829 FRU PTS system, fruc 31.6 26 0.00057 31.7 1.4 31 437-468 2-32 (85)
61 COG1445 FrwB Phosphotransferas 31.5 50 0.0011 32.2 3.3 33 435-468 4-36 (122)
62 COG1049 AcnB Aconitase B [Ener 27.7 1.1E+02 0.0025 37.1 6.0 31 761-792 214-244 (852)
63 PF07972 Flavodoxin_NdrI: NrdI 27.1 57 0.0012 31.7 2.9 42 500-542 41-85 (122)
64 PRK03600 nrdI ribonucleotide r 26.7 60 0.0013 31.9 3.1 28 515-542 56-86 (134)
65 PRK07084 fructose-bisphosphate 26.4 1.5E+02 0.0033 33.4 6.5 85 37-131 5-95 (321)
66 COG0311 PDX2 Predicted glutami 21.9 99 0.0021 32.4 3.7 75 470-547 38-114 (194)
67 PRK10427 putative PTS system f 20.3 75 0.0016 30.5 2.3 33 435-468 5-37 (114)
No 1
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-260 Score=2096.88 Aligned_cols=799 Identities=72% Similarity=1.190 Sum_probs=785.9
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeee
Q 003617 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (807)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~l~~~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (807)
.+||+...++|+..+. .++||+|++|+ ..+++||||||||||+++||||++.|.++++|+||+|...+.+..||+|+
T Consensus 6 ~~~f~~~~~~l~~~~~--~~kyf~l~~l~-~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~~t~~k~vEvpFk 82 (892)
T KOG0452|consen 6 ENPFAQLIETLPKPGG--VYKYFDLPKLN-SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWKNTQKKQVEVPFK 82 (892)
T ss_pred cccHHHHHhccCCCCC--cceeeeccccc-cccccCchhHHHHHHHHHhcCccceeeHHHHHHHhCccccCccceeeccc
Confidence 4789877788888764 79999999998 68999999999999999999999999999999999999887777899999
Q ss_pred cceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhh
Q 003617 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (807)
Q Consensus 84 pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~ 163 (807)
|+||++|||||+||++|||+|||+++++|+||+||||.+|+|||||||+|+|+.++++|+++|+..||+||+|||.||||
T Consensus 83 PARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKW 162 (892)
T KOG0452|consen 83 PARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKW 162 (892)
T ss_pred cceeeeecccCCchheeHHHHHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeec
Q 003617 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (807)
Q Consensus 164 ~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~v 243 (807)
+.++|+|+.++|||+||+||||||||||||+..++++|||++|||||||||++|||++||||||+|+|++|+|||++|.+
T Consensus 163 gs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvl 242 (892)
T KOG0452|consen 163 GSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVL 242 (892)
T ss_pred hhHhhcceEEeCCCCceeEEeehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHH
Q 003617 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (807)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~Y 323 (807)
|+|||.+|+|+|+++||++||+|+|+++||+.|++||||||||+|+++||+.||+||+||+||||||.||||+|+.|++|
T Consensus 243 P~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~y 322 (892)
T KOG0452|consen 243 PEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQY 322 (892)
T ss_pred ccceeEEeccccCCCceeehhhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccC
Q 003617 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (807)
Q Consensus 324 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~ 403 (807)
|+.|||+++.++.+|.|+|+.++|++...++.++.|++++++||++|+|+|+||+||+++++|++++.+|++||.+++++
T Consensus 323 l~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgF 402 (892)
T KOG0452|consen 323 LKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGF 402 (892)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccc
Confidence 99999999999999999999999999877888899999999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 003617 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (807)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (807)
||+.++++.+++...+.++|++++|.||+|+||+|+||||+|||++|.+|+||||||+++|++|+||+||+++|||.+|+
T Consensus 403 KgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt 482 (892)
T KOG0452|consen 403 KGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVT 482 (892)
T ss_pred cccccChhHhhceEEEEECCeeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhh
Confidence 99999988888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 003617 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (807)
Q Consensus 484 ~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (807)
.||.++|++++|+++||.|+||||++||||+|+|.+++..+|++|++|+++|+|||||||||+||.+++||||||+||+|
T Consensus 483 ~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvva 562 (892)
T KOG0452|consen 483 KYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVA 562 (892)
T ss_pred hhhhhccchhHHHhcCceeeccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCCC
Q 003617 564 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 643 (807)
Q Consensus 564 ~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~ 643 (807)
|||+|+++||+++||||+++||+.|||+||||+++||++++++.|.|+||++.|+.|..|++.||+|++|++.+|+||++
T Consensus 563 YaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~ 642 (892)
T KOG0452|consen 563 YAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPK 642 (892)
T ss_pred hhhcceeecceeccccccCCCCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhh
Q 003617 644 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 723 (807)
Q Consensus 644 styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm 723 (807)
||||++||||++|+.+++++++|++|+||+.+||+||||||||||+|.++|||+|||.+||++|+|||||||||||+|||
T Consensus 643 STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vM 722 (892)
T KOG0452|consen 643 STYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVM 722 (892)
T ss_pred CceecCCccccccccCCCCcccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEec
Q 003617 724 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSD 803 (807)
Q Consensus 724 ~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~ 803 (807)
.||||+|||+.|+++. +.||.|+|.|+||.++|||||++|+++|+|+||+||++||+|||||||||||.||||||||||
T Consensus 723 aRGTFANIrlvNkl~~-k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViae 801 (892)
T KOG0452|consen 723 ARGTFANIRLVNKLLS-KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAE 801 (892)
T ss_pred hcccchhhHHHHHHhc-ccCCceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHH
Confidence 9999999999999994 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 003617 804 FCS 806 (807)
Q Consensus 804 Sfa 806 (807)
||-
T Consensus 802 S~E 804 (892)
T KOG0452|consen 802 SYE 804 (892)
T ss_pred HHH
Confidence 985
No 2
>PLN00070 aconitate hydratase
Probab=100.00 E-value=5e-255 Score=2199.36 Aligned_cols=803 Identities=90% Similarity=1.413 Sum_probs=768.9
Q ss_pred CCCccccccceecC-CCCceeEEEeCCCCCCCCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEee
Q 003617 4 ENPFKSILKTLQRP-DGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPF 82 (807)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~y~~l~~l~~~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~ 82 (807)
.|+|....++|+++ ++ +.|+||+|.++...++++|||||||||||+||||||..++++++++|++|......+.||+|
T Consensus 42 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lP~s~rillE~~lR~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f 120 (936)
T PLN00070 42 ENPFKGILTSLPKPGGG-EFGKYYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENTSPKQVEIPF 120 (936)
T ss_pred cCchhhhhheeeecCCC-ceEEEEEhhhcccCChhhCCcHHHHHHHHHhhhcCCccCCHHHHHHHHhccccCCCCceecc
Confidence 47786533778887 43 33999999998656899999999999999999999999999999999999876656679999
Q ss_pred ecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhh
Q 003617 83 KPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLK 162 (807)
Q Consensus 83 ~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk 162 (807)
+|+||+||||||+|+++|||||||+++++|+||++|||.+||+||||||||+|++++.+|+.+|+.+||+||.|||.|||
T Consensus 121 ~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flk 200 (936)
T PLN00070 121 KPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLK 200 (936)
T ss_pred CCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEee
Q 003617 163 WGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 242 (807)
Q Consensus 163 ~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~ 242 (807)
|++++|+||+|||||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||+
T Consensus 201 w~~~af~~~~vvpPG~GI~HQV~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~ 280 (936)
T PLN00070 201 WGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMV 280 (936)
T ss_pred hhhhhhcCccccCCCCceEeeechhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEee
Confidence 99999999999999999999999999999999768999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHH
Q 003617 243 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 322 (807)
Q Consensus 243 vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~ 322 (807)
+||||||+|+|+|++|||||||||+|+++||++|++||||||+|||+++||++||||||||++||||||||||+|++|++
T Consensus 281 vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~ 360 (936)
T PLN00070 281 LPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQ 360 (936)
T ss_pred CCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhccccc
Q 003617 323 YLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 402 (807)
Q Consensus 323 YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~ 402 (807)
||+.|||++++++++++|+|+|+||+++..+|++|.|++++|||||+|||+||||++|||++||++++++|.+++..+.+
T Consensus 361 YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~ 440 (936)
T PLN00070 361 YLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVG 440 (936)
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhccccc
Confidence 99999999999999999999999999766678999999999999999999999999999999999999999888875544
Q ss_pred CCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHH
Q 003617 403 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 482 (807)
Q Consensus 403 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V 482 (807)
.+|+..+.++......++++|++..+++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V 520 (936)
T PLN00070 441 FKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVV 520 (936)
T ss_pred ccccccchhhhhhhhhhhccCCCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHH
Confidence 44443322222223456689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHH
Q 003617 483 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 562 (807)
Q Consensus 483 ~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVa 562 (807)
++||+++||+++|+++||+|++||||+|||||++++++++++|.+|+++++||||+||||+|||||.+++||||||++||
T Consensus 521 ~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVa 600 (936)
T PLN00070 521 TKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 600 (936)
T ss_pred HHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCC
Q 003617 563 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 642 (807)
Q Consensus 563 A~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~ 642 (807)
||||+|+|+|||++||||+++||++|||+||||+.+||++++.+.++|++|.+.|.+++.+++.|++|++|.+.+|+||+
T Consensus 601 A~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~ 680 (936)
T PLN00070 601 AYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDP 680 (936)
T ss_pred HHHHcCCcccCCCCCCCccCCCCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhh
Q 003617 643 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 722 (807)
Q Consensus 643 ~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~ev 722 (807)
+||||++||||++++..+++..+|++||||+++|||||||||||||+|+++||||+||+++||.++||||||||||||||
T Consensus 681 ~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~ev 760 (936)
T PLN00070 681 KSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEI 760 (936)
T ss_pred CcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchh
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEe
Q 003617 723 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802 (807)
Q Consensus 723 m~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA 802 (807)
|+||||+|||++|+|++|++|++|+|+|+|++++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||
T Consensus 761 m~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA 840 (936)
T PLN00070 761 MARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIA 840 (936)
T ss_pred hhceeccchhhhhhhcCCCcCCeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003617 803 DFCSG 807 (807)
Q Consensus 803 ~Sfa~ 807 (807)
+||++
T Consensus 841 ~SF~r 845 (936)
T PLN00070 841 KSFER 845 (936)
T ss_pred ccHHH
Confidence 99974
No 3
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=2.3e-252 Score=2174.56 Aligned_cols=797 Identities=70% Similarity=1.154 Sum_probs=761.5
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCCCCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeee
Q 003617 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (807)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~l~~~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~ 83 (807)
.++|...+++|+ ++ ..|+||+|.++...+++||||||||||||+||||||..++++++++|++|......+.||+|+
T Consensus 13 ~~~~~~~~~~l~-~~--~~~~~~~l~~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~~~ 89 (898)
T PTZ00092 13 PNPFEKVLKTLK-DG--GSYKYYSLNELHDPRLKKLPYSIRVLLESAVRNCDEFDVTSKDVENILNWEENSKKQIEIPFK 89 (898)
T ss_pred cCchhhhhccCC-CC--CeEEEEEhhhcccCChhhCCchHHHHHHHHhhcCCCcCCCHHHHHHHHcCcccCCCCceeeec
Confidence 367764336777 54 389999999987668999999999999999999999999999999999998766667899999
Q ss_pred cceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhh
Q 003617 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (807)
Q Consensus 84 pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~ 163 (807)
||||+|||+||+|+++|||||||+++++|+||.+|||.+||+|+|||+||++++++.+++.+|+.+||+||.|||+||+|
T Consensus 90 p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~ 169 (898)
T PTZ00092 90 PARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKW 169 (898)
T ss_pred cceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeec
Q 003617 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (807)
Q Consensus 164 ~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~v 243 (807)
++++|+||+|+|||+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++
T Consensus 170 ~~~~f~~~~v~pPg~GI~HQV~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~v 249 (898)
T PTZ00092 170 GSKAFKNLLIVPPGSGIVHQVNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVL 249 (898)
T ss_pred hhhhhcCCcccCCCCceeceechhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHH
Q 003617 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (807)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~Y 323 (807)
||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++|
T Consensus 250 PevvgV~LtG~L~~gVtakDliL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~Y 329 (898)
T PTZ00092 250 PEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDY 329 (898)
T ss_pred CCEEEEEEEeecCCCcCHHHHHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccC
Q 003617 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (807)
Q Consensus 324 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~ 403 (807)
|+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.+++....+.
T Consensus 330 L~~tgR~~~~~~lve~y~ka~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~ 406 (898)
T PTZ00092 330 LKQTGRSEEKVELIEKYLKANGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGF 406 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhh
Confidence 99999999889999999999999974 577999999999999999999999999999999999999988776544333
Q ss_pred CCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 003617 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (807)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (807)
+++++.+++....+++.++|.++.+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~ 486 (898)
T PTZ00092 407 KGFGIPEEKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVT 486 (898)
T ss_pred hccCCCccccccccccccCCcccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHH
Confidence 44443222211222334578889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 003617 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (807)
Q Consensus 484 ~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (807)
+||+++||+++|+++||+|++||||+|||||++++++++++|.+|++++++|||+||||+|||||..++||||||++|||
T Consensus 487 ~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA 566 (898)
T PTZ00092 487 KYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 566 (898)
T ss_pred HHHHHcCcHHHHHHcCCEEeCCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCCC
Q 003617 564 YALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPK 643 (807)
Q Consensus 564 ~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~ 643 (807)
|||+|+|+||+++||||+|++|++|||+||||+.+||++++..+++|++|.+.|.+|++++++|++|+++++++|+||++
T Consensus 567 ~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~ 646 (898)
T PTZ00092 567 YALAGRVNIDFETEPLGSDKTGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEK 646 (898)
T ss_pred HHHcCceecccccCCcccCCCCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhh
Q 003617 644 STYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIM 723 (807)
Q Consensus 644 styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm 723 (807)
||||++||||++++.++++..+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||
T Consensus 647 StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm 726 (898)
T PTZ00092 647 STYIHNPPFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVM 726 (898)
T ss_pred CCcccCCCCccccccCCCCCCCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhh
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEec
Q 003617 724 ARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSD 803 (807)
Q Consensus 724 ~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~ 803 (807)
+||||+|||++|+|+ |.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+
T Consensus 727 ~RgtF~Niri~N~l~-g~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~ 805 (898)
T PTZ00092 727 VRGTFANIRLINKLC-GKVGPNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAE 805 (898)
T ss_pred cceeccccceeeeec-cCCCCceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEe
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003617 804 FCSG 807 (807)
Q Consensus 804 Sfa~ 807 (807)
||++
T Consensus 806 SF~r 809 (898)
T PTZ00092 806 SFER 809 (898)
T ss_pred cHHH
Confidence 9974
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.4e-250 Score=2152.41 Aligned_cols=778 Identities=64% Similarity=1.036 Sum_probs=746.1
Q ss_pred eeEEEeCCCCC--CCCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeecceeEeecCccHhHHH
Q 003617 22 FGKYYSLPALN--DPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVV 99 (807)
Q Consensus 22 ~~~y~~l~~l~--~~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~Tg~~ai~ 99 (807)
.|+||+|.+|+ ..++++|||||||||||+||||||..++++++++|++|.+....+.||+|+||||+|||+||+|+++
T Consensus 2 ~~~~~~l~~l~~~~~~~~~lP~s~rvllE~~lr~~d~~~~~~~~~~~~~~w~~~~~~~~ei~f~p~RvllQD~TGvpa~v 81 (876)
T TIGR01341 2 TYYYYSLKALEESGGKISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGEVADTEIAFKPARVVMQDFTGVPAVV 81 (876)
T ss_pred ceEEEehHHhhcccCChhhCCcHHHHHHHHHHhcCCCCCCCHHHHHHHHcCcccCCCCceeccCchhheeccccCchHHH
Confidence 59999999985 3579999999999999999999999999999999999986665667999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCc
Q 003617 100 DLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSG 179 (807)
Q Consensus 100 dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~G 179 (807)
|||||||+++++|+||.+|||.+||+|+|||+||++.+++.+++.+|+.+||+||+|||+||||++++|.||+|+|||+|
T Consensus 82 dlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~G 161 (876)
T TIGR01341 82 DLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTG 161 (876)
T ss_pred HHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccceeeecCC----CccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeec
Q 003617 180 IVHQVNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL 255 (807)
Q Consensus 180 I~HqV~lE~la~~v~~~~----G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L 255 (807)
||||||+||||+||+.++ |++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|
T Consensus 162 I~HqV~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L 241 (876)
T TIGR01341 162 IIHQVNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKL 241 (876)
T ss_pred eeceechhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeec
Confidence 999999999999999653 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHH
Q 003617 256 RDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS 335 (807)
Q Consensus 256 ~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 335 (807)
++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||++++++
T Consensus 242 ~~gVtAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~ 321 (876)
T TIGR01341 242 QEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVE 321 (876)
T ss_pred CCCcCHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHhhccccCCCCC-CCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCcccccc
Q 003617 336 MIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQS 414 (807)
Q Consensus 336 ~~~~y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~ 414 (807)
++++|+|+|++|++ | ++|.|++++|||||+|||+||||++|||++||++++++|.+++....+.+|+.+...
T Consensus 322 l~~~y~k~~~l~~~----d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~--- 394 (876)
T TIGR01341 322 LVEKYARAQGLFYD----DSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE--- 394 (876)
T ss_pred HHHHHHHhcccccC----CCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh---
Confidence 99999999999963 4 689999999999999999999999999999999999998877654332233322111
Q ss_pred ccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHH
Q 003617 415 KVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKY 494 (807)
Q Consensus 415 ~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~ 494 (807)
.....++|++..+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++
T Consensus 395 -~~~~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~ 473 (876)
T TIGR01341 395 -PLKKKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPY 473 (876)
T ss_pred -hhheeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHH
Confidence 1112246888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCC
Q 003617 495 LNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDF 574 (807)
Q Consensus 495 l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 574 (807)
|+++||+|++||||+||||||+++++++++|.+++++++||||+||||+|||||..++||||||++||||||+|+|+||+
T Consensus 474 L~~aGf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~ 553 (876)
T TIGR01341 474 LEELGFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINL 553 (876)
T ss_pred HHHcCCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCCCCceecCCCCCC
Q 003617 575 ETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFK 654 (807)
Q Consensus 575 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~ 654 (807)
++||||+|++|++|||+||||+.+||++++.+.++++||++.|.+++.+++.|++|+++++++|+||++||||++||||+
T Consensus 554 ~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~ 633 (876)
T TIGR01341 554 YTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFE 633 (876)
T ss_pred cCCCcccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchh
Q 003617 655 DMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLV 734 (807)
Q Consensus 655 ~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~ 734 (807)
+++.++++..+|++||||+++|||||||||||||+|+++||||+||+++|+.++|||||||||||||||+||||+|+|++
T Consensus 634 ~~~~~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~ 713 (876)
T TIGR01341 634 EMKQDPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIK 713 (876)
T ss_pred ccccCCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhh
Confidence 99988888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 735 NKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 735 n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|+|++|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+||++
T Consensus 714 N~l~~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~r 786 (876)
T TIGR01341 714 NLMVKGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFER 786 (876)
T ss_pred hhcccCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.6e-249 Score=2153.02 Aligned_cols=788 Identities=58% Similarity=0.974 Sum_probs=752.0
Q ss_pred CCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeE
Q 003617 4 ENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEI 80 (807)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~l~~---~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei 80 (807)
.|+|.. +++|++.++ .|+||+|.+++. .++++|||||||||||+||||||..|+++++++|++|......+.||
T Consensus 3 ~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~lP~s~rvllE~~lr~~d~~~v~~~~~~~~~~w~~~~~~~~ei 79 (889)
T PRK12881 3 HNLHKT-LKEFDVGGK--TYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEEHLEALANWLPERKSDDEI 79 (889)
T ss_pred CCcccc-ccceeeCCe--eEEEEEhHHhhccccCChhhCCchHHHHHHHHhhcCCCCCCCHHHHHHHHhchhcCCCCcee
Confidence 367753 567888764 899999999853 37999999999999999999999999999999999998766666799
Q ss_pred eeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhh
Q 003617 81 PFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAF 160 (807)
Q Consensus 81 ~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~f 160 (807)
+|+||||+|||+||+||++|||||||+++++|+||.++||.+||+++|||+||++.+++.+++.+|+.+||+||.|||+|
T Consensus 80 ~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~f 159 (889)
T PRK12881 80 PFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQF 159 (889)
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccceeeCCCCceeecccccccceeeecC----CCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcC
Q 003617 161 LKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLG 236 (807)
Q Consensus 161 lk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g 236 (807)
||||+++|.||+|+|||+|||||||+||||+||+.+ .|+++||++|||||||||+||||+|||||||+|++++|+|
T Consensus 160 Lkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlg 239 (889)
T PRK12881 160 LKWGMQAFDNFRVVPPGTGIMHQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLG 239 (889)
T ss_pred HHHHHHHccCCCCCCCCCCccceEchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhC
Confidence 999999999999999999999999999999999965 3799999999999999999999999999999999999999
Q ss_pred CceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecC
Q 003617 237 QPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 316 (807)
Q Consensus 237 ~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~ 316 (807)
||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+||||++||+++|||||||++||||||||||+
T Consensus 240 q~~~~~vPevigV~l~G~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~ 319 (889)
T PRK12881 240 QPVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPV 319 (889)
T ss_pred CcEEeeCCCEEEEEEEeecCCCcCHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHh
Q 003617 317 DHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHAC 396 (807)
Q Consensus 317 De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~ 396 (807)
|++|++||+.|||++++++++|+|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++.+|.++
T Consensus 320 De~T~~YL~~tgr~~~~v~l~e~y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~ 396 (889)
T PRK12881 320 DEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDL 396 (889)
T ss_pred ChhHHHHHHhcccchHHHHHHHHHHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHH
Confidence 999999999999999999999999999999975 58899999999999999999999999999999999999988876
Q ss_pred hcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEe
Q 003617 397 LDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLA 476 (807)
Q Consensus 397 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~ 476 (807)
+......+++... .-.+....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+
T Consensus 397 ~~~~~~~~~~~~~----------~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~ 466 (889)
T PRK12881 397 FSKPVAENGFAKK----------AQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLA 466 (889)
T ss_pred hhhHHHhhhhhcc----------cccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEe
Confidence 6432111121110 002344568899999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEec
Q 003617 477 PGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLA 556 (807)
Q Consensus 477 PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLa 556 (807)
|||++|++||+++||+++|+++||+|++||||+||||||++.++++++|++||++++||||+||||+||||+..++||||
T Consensus 467 PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLa 546 (889)
T PRK12881 467 PGSKVVTEYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLA 546 (889)
T ss_pred CCCHHHHHHHHHcCcHHHHHHcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEEC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCC
Q 003617 557 SPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGT 636 (807)
Q Consensus 557 SP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~ 636 (807)
||++||||||+|+|+||+++||||+++||++|||+||||+.+||++++++.++++||.+.|+++++++++|++|++++++
T Consensus 547 SP~lvaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~ 626 (889)
T PRK12881 547 SPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGP 626 (889)
T ss_pred CHHHHHHHHhcCceecCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCc
Q 003617 637 LYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSR 716 (807)
Q Consensus 637 ~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsr 716 (807)
+|+||++||||++||||++|..+++++++|++||||+++|||||||||||||+|+++||||+||+++||.++||||||||
T Consensus 627 ~~~wd~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~r 706 (889)
T PRK12881 627 LYDWDPKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSR 706 (889)
T ss_pred eeccCCCCCcccCCCCCcccccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhccccccc
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccC
Q 003617 717 RGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLV 796 (807)
Q Consensus 717 rgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lG 796 (807)
|||||||+||||+|+|++|+|+++.+|++|+|+|+|++++|||+|++|+++|+|+|||||+|||||||||||||++++||
T Consensus 707 RgN~evm~rgtF~nir~~N~l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lG 786 (889)
T PRK12881 707 RGNHEVMMRGTFANVRIKNLMIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLG 786 (889)
T ss_pred ccchHHhhhhccccCcccceeccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCC
Q 003617 797 NPCIMSDFCSG 807 (807)
Q Consensus 797 v~aVIA~Sfa~ 807 (807)
||||||+||++
T Consensus 787 v~aVIA~SFaR 797 (889)
T PRK12881 787 VKAVIAESFER 797 (889)
T ss_pred CcEEEEecHHH
Confidence 99999999974
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=2.3e-248 Score=2139.09 Aligned_cols=790 Identities=60% Similarity=1.023 Sum_probs=756.8
Q ss_pred CCCCCCccccccceecCCCCceeEEEeCCCCCC---CCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCc
Q 003617 1 MATENPFKSILKTLQRPDGGEFGKYYSLPALND---PRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQ 77 (807)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~l~~---~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~ 77 (807)
|...++|.. +++|++.++ .|+||+|.+|+. .++++|||||||||||+|||||+..++++++++|++|.....++
T Consensus 1 ~~~~~~~~~-~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~lP~sirillE~~lr~~d~~~~~~~~v~~~~~w~~~~~~~ 77 (888)
T PRK09277 1 MSSTDSFKA-RKTLEVGGK--SYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLPKAKPD 77 (888)
T ss_pred CCCCCcccc-cceeeeCCe--eEEEEEhHHhhhcccCChhhCCcHHHHHHHHHhhcCCCccCCHHHHHHHHhchhcCCCC
Confidence 455678864 577888754 899999988753 47999999999999999999999999999999999998766667
Q ss_pred eeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhh
Q 003617 78 VEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKER 157 (807)
Q Consensus 78 ~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~er 157 (807)
.||+|+||||+|||+||+|+++|||||||+++++|+||++|||.+||+||+||+||+++++..+++.+|+.++|+||.||
T Consensus 78 ~ei~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er 157 (888)
T PRK09277 78 REIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEER 157 (888)
T ss_pred ceeeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccceeeCCCCceeecccccccceeeecC-CC--ccccCeEEecCCCCcccCcccceeeccCHHHHHHHH
Q 003617 158 FAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAM 234 (807)
Q Consensus 158 y~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~-~G--~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam 234 (807)
|+||||++++|.|++|+|||+|||||||+||||+||+.+ +| +++||++|||||||||+||||+|||||||+|++++|
T Consensus 158 ~~fLkw~~~~f~~~~v~pPg~GI~HqV~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam 237 (888)
T PRK09277 158 YQFLKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAM 237 (888)
T ss_pred HhHHHHHHHHhcCCCCCCCCCCccceechhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHH
Confidence 999999999999999999999999999999999999977 78 999999999999999999999999999999999999
Q ss_pred cCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeee
Q 003617 235 LGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFF 314 (807)
Q Consensus 235 ~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~f 314 (807)
+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||||||
T Consensus 238 ~g~~~~~~vPevvgV~LtG~L~~gVtAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~f 317 (888)
T PRK09277 238 LGQPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFF 317 (888)
T ss_pred hcCcEEeeCCCEEEEEEEeecCCCccHhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchH
Q 003617 315 PVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWH 394 (807)
Q Consensus 315 p~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~ 394 (807)
|+|++|++||+.|||++++++++|+|.|+|++|+. +|++|.|+++++||||+|||+||||++|||++||++++++|.
T Consensus 318 p~De~T~~YL~~tgr~~~~v~~~e~y~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~ 394 (888)
T PRK09277 318 PIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFA 394 (888)
T ss_pred cCChhHHHHHHhcCCChHHHHHHHHHHHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchh
Confidence 99999999999999999999999999999999963 588999999999999999999999999999999999998877
Q ss_pred HhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEE
Q 003617 395 ACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTS 474 (807)
Q Consensus 395 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~ 474 (807)
++++. +.+++ ..+..++|....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++
T Consensus 395 ~~~~~--~~~~~---------~~~~~~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~ 463 (888)
T PRK09277 395 KSAEL--GVQGF---------GLDEAEEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTS 463 (888)
T ss_pred hhchh--hhhhh---------hhhhhhcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEE
Confidence 54321 11111 12234678888899999999999999999999999999999999999999999999999
Q ss_pred EecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceE
Q 003617 475 LAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANY 554 (807)
Q Consensus 475 v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~y 554 (807)
|+|||++|++||+++||+++|+++||+|++||||+||||+|++.++++++|.++|++++||||+||||+||||+..++||
T Consensus 464 v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~y 543 (888)
T PRK09277 464 LAPGSKVVTDYLEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANY 543 (888)
T ss_pred EeCCCHHHHHHHHHCChHHHHHHcCCEEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCC
Q 003617 555 LASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS 634 (807)
Q Consensus 555 LaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~ 634 (807)
||||++||||||+|+|+|||++||||+++||++|||+||||+.+||++++.+.+++++|.+.|.+++.+++.|++|++++
T Consensus 544 LaSP~lvaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~ 623 (888)
T PRK09277 544 LASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPE 623 (888)
T ss_pred EcCHHHHHHHHHcCccccCCCCCCcccCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCcccccccc
Q 003617 635 GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYG 714 (807)
Q Consensus 635 ~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsyg 714 (807)
++.|+||++||||++||||++++.+++++++|+++|||+++|||||||||||||+|+++||||+||+++||.++||||||
T Consensus 624 ~~~~~w~~~StyI~~pp~f~~~~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg 703 (888)
T PRK09277 624 GPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYG 703 (888)
T ss_pred CCccccCCCCCcccCCCCCCcccccCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccc
Confidence 99999999999999999999998888788999999999999999999999999999999999999999999999999999
Q ss_pred CcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccc
Q 003617 715 SRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPML 794 (807)
Q Consensus 715 srrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~ 794 (807)
|||||||||+||||+|+|++|+|++|.+|+||+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++
T Consensus 704 srRgN~evm~RgtfaNir~~N~l~~g~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~ 783 (888)
T PRK09277 704 SRRGNHEVMMRGTFANIRIRNEMVPGVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRL 783 (888)
T ss_pred cccccchhhhheeccccchhhhcccCCccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCCC
Q 003617 795 LVNPCIMSDFCSG 807 (807)
Q Consensus 795 lGv~aVIA~Sfa~ 807 (807)
||||||||+||++
T Consensus 784 lgi~avia~sf~r 796 (888)
T PRK09277 784 LGVKAVIAESFER 796 (888)
T ss_pred hCCcEEEEecHHH
Confidence 9999999999974
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=1.4e-244 Score=2098.08 Aligned_cols=749 Identities=45% Similarity=0.786 Sum_probs=716.2
Q ss_pred eeEEEeCC-CCC---CCCCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeecceeEeecCccHhH
Q 003617 22 FGKYYSLP-ALN---DPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPA 97 (807)
Q Consensus 22 ~~~y~~l~-~l~---~~~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~Tg~~a 97 (807)
.|+||+|. ++. ..++++|||||||||||+||||||..++++ +++|++|. .+.||+|+|+||+|||+||+|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~lP~s~rillE~~lr~~d~~~~~~~-~~~~~~w~----~~~ei~f~P~RV~mqD~Tgvpa 86 (858)
T TIGR02333 12 DLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVRRCDPETLSAS-LLQIIERK----RDLDFPWYPARVVCHDILGQTA 86 (858)
T ss_pred ceEEEEcHHhhhhcccCChhhCCchHHHHHHHHhhcCCChhhHHH-HHHHHcCC----CCCeeccCcceeeeccccCcch
Confidence 69999996 664 247999999999999999999999999988 99999992 3469999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc-chHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCC
Q 003617 98 VVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR-SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPP 176 (807)
Q Consensus 98 i~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~pp 176 (807)
++|||+|||+++++|+||++|||.+|++||||||||+|.++ +.+++.+|+.+||+||.|||+|||||+++|+||+||||
T Consensus 87 ~vdlAamr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~pp 166 (858)
T TIGR02333 87 LVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPA 166 (858)
T ss_pred hhhHhhhHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCC
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred CCceeecccccccceeeecCCCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecC
Q 003617 177 GSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 256 (807)
Q Consensus 177 G~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~ 256 (807)
|+|||||||+||||+||+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|+
T Consensus 167 G~GI~HQV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~ 246 (858)
T TIGR02333 167 GNGIMHQINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQ 246 (858)
T ss_pred CCCEeeeEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHH
Q 003617 257 DGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSM 336 (807)
Q Consensus 257 ~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~ 336 (807)
+|||||||||+|+++||++|++||||||+|||+++||+++|||||||++||||||||||+|++|++||+.|||+++++++
T Consensus 247 ~gVtakDliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~l 326 (858)
T TIGR02333 247 PGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKL 326 (858)
T ss_pred CCCCHhHHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCcccccccc
Q 003617 337 IESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKV 416 (807)
Q Consensus 337 ~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 416 (807)
+|+|.|+|++|++ +|++|.|++++|||||+|||+||||++|||++||+|+++.... .... .
T Consensus 327 ve~y~k~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~------------~~~~--~-- 387 (858)
T TIGR02333 327 VETYAKAAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA------------GPAE--E-- 387 (858)
T ss_pred HHHHHHHHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc------------cccc--c--
Confidence 9999999999975 4779999999999999999999999999999999998753110 0000 0
Q ss_pred ceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHH
Q 003617 417 AEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLN 496 (807)
Q Consensus 417 ~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~ 496 (807)
...| .+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 388 ---~~~g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~ 461 (858)
T TIGR02333 388 ---QPEG---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELE 461 (858)
T ss_pred ---cccC---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 0122 4789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCC
Q 003617 497 HLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFET 576 (807)
Q Consensus 497 ~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~ 576 (807)
++||+|++|||||||||+|++.++++++|.+++++.++|||+||||+||||+..+++|||||++||||||+|+|+|||++
T Consensus 462 ~aGf~v~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~ 541 (858)
T TIGR02333 462 QLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEK 541 (858)
T ss_pred HcCCEEeCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCCCCceecCCCCCCCC
Q 003617 577 EPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDM 656 (807)
Q Consensus 577 dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~ 656 (807)
||||.|+||++|||+||||+.+||++++++.+++++|++.|++++++++ ++++.+++|+||++|||||+||||+++
T Consensus 542 dplg~~~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~ 617 (858)
T TIGR02333 542 DVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA 617 (858)
T ss_pred CccccCCCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC
Confidence 9999999999999999999999999999999999999999999998886 788889999999999999999999988
Q ss_pred CCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhh
Q 003617 657 TMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNK 736 (807)
Q Consensus 657 ~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~ 736 (807)
+ .+..||++||+|+++||+||||||||||+|+++||||+||+++||.++|||||||||||||||+||||+|+|++|+
T Consensus 618 ~---~~~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~ 694 (858)
T TIGR02333 618 L---AGERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNE 694 (858)
T ss_pred C---CcccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhh
Confidence 3 3558999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--C--CCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 737 LLN--G--EVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 737 ~~~--~--~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|++ | ++|++|+|+|+|+.++|||+|++||++|+|||||||+|||||||||||||++++||++||||+||++
T Consensus 695 l~~~~g~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~r 769 (858)
T TIGR02333 695 MVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFER 769 (858)
T ss_pred hccccCccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHH
Confidence 998 4 4799999999999999999999999999999999999999999999999999999999999999974
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.8e-241 Score=2048.02 Aligned_cols=764 Identities=60% Similarity=1.017 Sum_probs=735.3
Q ss_pred ccceecCCCCceeEEEeCCCCCCC-CCCCCChhhhHHHhhhccccCcccccHHHHHHHHhhhcCCCCceeEeeecceeEe
Q 003617 11 LKTLQRPDGGEFGKYYSLPALNDP-RIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFKPARVLL 89 (807)
Q Consensus 11 ~~~~~~~~~~~~~~y~~l~~l~~~-~~~~LP~sirvLlEn~lR~~d~~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~ 89 (807)
++++.+.++ .|+||+|++++.. .+++||||+|||+||++|++|+ ++++++.++.|........||.|+|+||+|
T Consensus 6 ~~~~~~~~~--~~~y~~l~~~~~~~~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~~~~~~ei~~~p~RVvm 80 (861)
T COG1048 6 RKTLTVGGK--TYYYYDLPKLEESGKISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPSGKPEKEIAFRPARVVM 80 (861)
T ss_pred hhhcccCCc--eeEEeehhhhhhccccccCChhHHHHHHHhcccccc---chhHHHHHhccccccCcccccccccceeee
Confidence 567888765 8999999999653 7999999999999999999998 789999999998766666799999999999
Q ss_pred ecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccc
Q 003617 90 QDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFH 169 (807)
Q Consensus 90 qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~ 169 (807)
||+||+|+++|+++||+++.++|+||.++||.+||+|+||||+++|.++.++|+++|+.+||+||.|||+||+|++++|+
T Consensus 81 QD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~ 160 (861)
T COG1048 81 QDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFY 160 (861)
T ss_pred ecccCCCeeEEhhhHHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecCcEEEE
Q 003617 170 NMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGF 249 (807)
Q Consensus 170 ~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV 249 (807)
||+|||||+||||||||||||+|||..+|++||||+|||||||||+||||+|||||||+|||++|+|||+||++|+||||
T Consensus 161 n~~vvPPGtGIiHQVnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGV 240 (861)
T COG1048 161 NFRVVPPGTGIIHQVNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGV 240 (861)
T ss_pred CcEEECCCCceeeeehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCC
Q 003617 250 KLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGR 329 (807)
Q Consensus 250 ~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr 329 (807)
+|+|+|++|||||||||+|+++||++|+||||||||||||++||+++|+|||||+|||||||||||+|++|++||+.|||
T Consensus 241 kLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR 320 (861)
T COG1048 241 KLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGR 320 (861)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCc
Q 003617 330 SDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIP 409 (807)
Q Consensus 330 ~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~ 409 (807)
.+++++++|+|+++|+||+++ +|++|+|+++||||||+|+|+||||++||+++||++++++|.+.+.....
T Consensus 321 ~~~~i~lve~y~~~~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~------- 391 (861)
T COG1048 321 SEEQVALVEAYAKAQGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEI------- 391 (861)
T ss_pred chHHHHHHHHHHHHhcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhc-------
Confidence 999999999999999999874 57789999999999999999999999999999999999998876543211
Q ss_pred cccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHc
Q 003617 410 KEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNS 489 (807)
Q Consensus 410 ~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~ 489 (807)
+..+...|+ ++.||+|+||+|||||||||||+|.||++|||+|+++|++++|||||+|+|||++|.+||+++
T Consensus 392 ------~~~~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~ 463 (861)
T COG1048 392 ------KRVYSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKA 463 (861)
T ss_pred ------ccccccccc--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHc
Confidence 011333444 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCc
Q 003617 490 GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 569 (807)
Q Consensus 490 Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~ 569 (807)
||+++|+++||+++++||||||||||+|++++++.|.++++++++|+|+||||+||+||..+++|||||+||+||||||+
T Consensus 464 Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~ 543 (861)
T COG1048 464 GLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGT 543 (861)
T ss_pred CCHHHHHhcCCEEeccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhhccccccCCCcccccccCCCCCccccCCCCceecC
Q 003617 570 VNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHE 649 (807)
Q Consensus 570 I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~ 649 (807)
|++|+++||+|.+++|++|||+||||+.+||.+.+...+.+++|.+.|.++|+ |+.++++++++|.|++.||||++
T Consensus 544 i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~ 619 (861)
T COG1048 544 INFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRL 619 (861)
T ss_pred cccCcccCccccCCCCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccC
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhccc
Q 003617 650 PPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFA 729 (807)
Q Consensus 650 pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~ 729 (807)
||||+.+...+.+ |+++|+|+++|||||||||||||+|+++||||+||..+|+.+.|||||||||||||||+|+||+
T Consensus 620 pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfa 696 (861)
T COG1048 620 PPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFA 696 (861)
T ss_pred CCccccccccccc---cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhc
Confidence 9999998876543 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 730 NIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 730 n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|+|++|+++++ +|++|+++|+|+ |||+|++||++|+|||||||+|||+|||||||||++++|||||||||||++
T Consensus 697 Nir~~n~~~~~-~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeR 770 (861)
T COG1048 697 NIRIRNEMVPG-EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFER 770 (861)
T ss_pred ccccccccccc-cCcceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHH
Confidence 99999999988 999999999999 999999999999999999999999999999999999999999999999975
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.9e-168 Score=1463.31 Aligned_cols=621 Identities=29% Similarity=0.439 Sum_probs=538.8
Q ss_pred ccHHHHHHHHhhhcCCC-------------CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEE
Q 003617 59 VKSKDVEKIIDWETTSP-------------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVD 125 (807)
Q Consensus 59 ~~~~~ie~il~~~~~~~-------------~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~ 125 (807)
-++|++||||+.+.+.. .+++|.++|||||+||+||+|+++||++| |.+ ++..|++
T Consensus 18 ~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~-------g~~----~v~~P~~ 86 (745)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTC-------GLP----QVAVPAS 86 (745)
T ss_pred CCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CCC----CCCCCCe
Confidence 36899999999886532 34689999999999999999999998764 543 3445678
Q ss_pred EEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-e
Q 003617 126 LVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-S 204 (807)
Q Consensus 126 lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-t 204 (807)
+++||++|++.... .++..++.||.|+|+|++|++++| ||+|+|||+||||||++|+| ++|+ +
T Consensus 87 v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E~~----------a~PG~~ 150 (745)
T TIGR01340 87 IHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLENY----------AFPGLM 150 (745)
T ss_pred EEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchhhc----------cCCCCe
Confidence 99999999775433 467889999999999999999999 89999999999999999954 5786 6
Q ss_pred EEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEE
Q 003617 205 VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEF 284 (807)
Q Consensus 205 vvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf 284 (807)
+|||||||||+||||+|||||||+|++++|+|++|||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||
T Consensus 151 ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL~ii~~l~~~G~~g~~vEf 230 (745)
T TIGR01340 151 MLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIILKLAGLLTVRGGTGYIVEY 230 (745)
T ss_pred EEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHH-HHHHHHHHhhccccCCCCCCCCcccEEE
Q 003617 285 YGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVS-MIESYLRANKMFVDYSEPQSERVYSSYL 363 (807)
Q Consensus 285 ~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~-~~~~y~~~~~l~~~~~~~D~~a~Y~~vi 363 (807)
+||||++||+++|||||||++|+|||+|+||+|++|++||+.+||++...+ .++.|.. .+| .+|++|.|++++
T Consensus 231 ~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~~--~~~----~~D~~a~Y~~~i 304 (745)
T TIGR01340 231 FGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYSF--FKL----KADEGAQYDELI 304 (745)
T ss_pred eCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHhc--ccc----cCCCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999875422 2222221 122 478999999999
Q ss_pred EEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCC
Q 003617 364 ELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTN 443 (807)
Q Consensus 364 eiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN 443 (807)
+||||+|||+||+|++|||++||+|+++++.+ .|++ .+|+|||||||||
T Consensus 305 ~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~-----~~Id~a~IGSCTN 353 (745)
T TIGR01340 305 EIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP-----EKLSAGLIGSCTN 353 (745)
T ss_pred EEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC-----ceecEEEEEcCCC
Confidence 99999999999999999999999999875432 1222 1578999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHh
Q 003617 444 TSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAA 523 (807)
Q Consensus 444 ~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~ 523 (807)
||+|||+.|| .++|+|++ +++++.||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++++.
T Consensus 354 gr~~Dl~~AA-~ilk~a~~--~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~gCg~CiG~~~~~~----- 425 (745)
T TIGR01340 354 SSYEDMSRCA-SIVKDAEQ--AGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLANACGPCIGQWDRKD----- 425 (745)
T ss_pred CCHHHHHHHH-HHhhhhhh--CCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCcC-----
Confidence 9999966555 55577754 566777999999999999999999999999999999999999999999987543
Q ss_pred hhccCCeEEEEeeccCCCCCCCCC-CCCCceEecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHH
Q 003617 524 AITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAH 602 (807)
Q Consensus 524 ~i~~~~~~~~~VsS~NRNF~GR~g-~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~ 602 (807)
.+.+++.+ ++|||+||||+|||| ...+.+|||||++||||||+|+|++|+++||| .+++|++|||+ ||+.+|+++
T Consensus 426 ~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~g~~v~l~--~p~~~e~~~ 501 (745)
T TIGR01340 426 DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPDGKEFKFP--APKGDELPE 501 (745)
T ss_pred ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCCCCEeecC--CCCccccch
Confidence 14467754 689999999999995 45678999999999999999999999999999 69999999999 799999987
Q ss_pred hhhcccCcchhhhccccccCCCcccccccCC--CCCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcc
Q 003617 603 VVQKSVLPDMFKATYEAITKGNPMWNQLSVP--SGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT 680 (807)
Q Consensus 603 ~~~~~v~~~~~~~~y~~i~~~~~~w~~l~~~--~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~it 680 (807)
. +| ..++..|+.+..+ ++..|+|+++||||++||||++ |+..+|+++|||+|+|||||
T Consensus 502 ~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~-----~~~~~i~~a~vLlk~gd~iT 561 (745)
T TIGR01340 502 K--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEP-----WNGKDLSGLRVLIKVTGKCT 561 (745)
T ss_pred h--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCC-----CCcCCccCCeEEEEECCCcC
Confidence 5 22 2346678776554 6789999999999999999964 45679999999999999999
Q ss_pred cCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccC--CCCCC--ceEecCCCcccc
Q 003617 681 TDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP--KTIHIPTGEKLS 756 (807)
Q Consensus 681 TDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~--~~~g~--~~~~~~~g~~~~ 756 (807)
||||||||+ ||++|| +|.|++ +|.|.. +.+++ ++.+.++|+.++
T Consensus 562 TDHIsPAG~---------~L~~rg----------------------~~~~i~-~n~~~~~~n~~~~~~~~~~~~~g~~~~ 609 (745)
T TIGR01340 562 TDHISAAGP---------WLKYKG----------------------HLDNIS-NNTLIGAVNAETGEVNKAYDLDGSKGT 609 (745)
T ss_pred hhcccccch---------hHhhcC----------------------Chhhhh-cceecccccccCCceeEEEcCCCCccc
Confidence 999999995 999965 444444 444432 12233 567778999999
Q ss_pred hhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 757 VFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 757 i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|+++|++|++.++|+|||||+||||||||||||+++++|||+||||+||++
T Consensus 610 ~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaR 660 (745)
T TIGR01340 610 IPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFAR 660 (745)
T ss_pred hHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHH
Confidence 999999999999999999999999999999999999999999999999985
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=3.6e-152 Score=1319.65 Aligned_cols=556 Identities=32% Similarity=0.488 Sum_probs=492.0
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEE-EecCCCCcC
Q 003617 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDL-VIDHSVQVD 135 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~l-viDH~v~~~ 135 (807)
++|++||||+.|.... .+.+|.++||||++||+||++++++|++| |.++ ..+| .++ ++||+++..
T Consensus 2 ~~Tl~eKIl~~h~~~~~v~~G~~v~~~vd~v~~~D~t~~~a~~~~~~~-------G~~~-~~~p---~~~~~~DH~~~~~ 70 (646)
T PRK07229 2 GLTLTEKILYAHLVEGELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDR-VKTE---LSVQYVDHNLLQA 70 (646)
T ss_pred CcCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEeccchHHHHHHHHHc-------CCCc-CCCC---CeEEECCCCCCCC
Confidence 4789999999886532 56689999999999999999999998765 7765 3344 344 899998876
Q ss_pred cccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCccc
Q 003617 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMI 215 (807)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~ 215 (807)
. .+|.|+|+|++|++++| |++|+|||+||||||++|+|++ +| +++|||||||||+
T Consensus 71 ~---------------~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~~~ 125 (646)
T PRK07229 71 D---------------FENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLERFAF-----PG----KTLLGSDSHTPTA 125 (646)
T ss_pred C---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCCcceehhhhccC-----CC----CEEEeCCCCcCcC
Confidence 3 58999999999999999 7999999999999999997664 33 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++++|+|+++||++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+|||+++||++
T Consensus 126 GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~ 205 (646)
T PRK07229 126 GGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVILELLRRLTVKGGVGKIIEYFGPGVATLSVP 205 (646)
T ss_pred CcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCccCccceEEEEECcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+|||+|+||+|++|++||+.+||.+++.. + .+|++|.|+++++||||+|||+||
T Consensus 206 ~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~----------l-----~~D~~a~Y~~~i~iDLs~leP~va 270 (646)
T PRK07229 206 ERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE----------L-----LADPDAEYDEVIEIDLSELEPLIA 270 (646)
T ss_pred HHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------c-----cCCCCCCeeEEEEEEccceeeeee
Confidence 9999999999999999999999999999999998765321 1 478999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (807)
+|++|||++||+|+++. .|++||||||||+|+||+++||++
T Consensus 271 ~P~~Pd~~~pv~e~~~~---------------------------------------~I~~a~IGSCTN~~~~Dl~~aA~i 311 (646)
T PRK07229 271 GPHSPDNVVPVSEVAGI---------------------------------------KVDQVLIGSCTNSSYEDLMRAASI 311 (646)
T ss_pred cCCCccceeEhHHhCCC---------------------------------------eEEEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998731 378999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEe
Q 003617 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (807)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V 535 (807)
| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+ .++++ +|
T Consensus 312 L------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~g~~~--------~~~~~---~v 374 (646)
T PRK07229 312 L------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQAP--------ATGNV---SL 374 (646)
T ss_pred h------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCCCccccccCCCCC--------CCCcE---EE
Confidence 9 8999999999999999999999999999999999999999999999999985432 13554 79
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCcchhhh
Q 003617 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKA 615 (807)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~~~~ 615 (807)
||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |++|||+ ||+.. .+++.+|.
T Consensus 375 st~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g~~~~~~--~p~~~--------~~~~~~~~- 439 (646)
T PRK07229 375 RTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---GEYPKLE--EPEGF--------AVDDAGII- 439 (646)
T ss_pred EccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---CCcceec--CCccc--------cCChhhhc-
Confidence 999999999999988999999999999999999999 999999977 9999997 78821 22344432
Q ss_pred ccccccCCCcccccccCCCCCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCH
Q 003617 616 TYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSP 695 (807)
Q Consensus 616 ~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~ 695 (807)
..++.|+.+++.. ++||+++|+|+++ +++.++|+|+++|||||||||||+++
T Consensus 440 ------~~~~~~~~~~~~~---------~p~~~~~~~~~~~-------~~~~~~~vl~~~gd~i~TD~I~Pa~~------ 491 (646)
T PRK07229 440 ------APAEDGSDVEVVR---------GPNIKPLPLLEPL-------PDLLEGKVLLKVGDNITTDHIMPAGA------ 491 (646)
T ss_pred ------CCCcccccccccC---------CCCCCCCccCCCC-------CcCceEEEEEEcCCCCChhccCcCCc------
Confidence 2355677776653 5788888888653 48999999999999999999999984
Q ss_pred HHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEe
Q 003617 696 AAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILA 775 (807)
Q Consensus 696 a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iiva 775 (807)
+||++ |+|+|.|.+++|.+++ |. ++.+++..+ ++||||
T Consensus 492 --~~l~~--------------r~~~~~l~~~~f~~~~--~~-----------------------f~~~~~~~~-~~iiVa 529 (646)
T PRK07229 492 --KWLPY--------------RSNIPNISEFVFEGVD--NT-----------------------FPERAKEQG-GGIVVG 529 (646)
T ss_pred --chhcc--------------CCCHHHHHHHHhccCC--hh-----------------------hhHHHHhcC-CcEEEe
Confidence 47764 6899999999998643 33 233566644 789999
Q ss_pred cCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 776 GAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 776 g~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|+|||||||||||||++++|||+||||+||++
T Consensus 530 G~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFar 561 (646)
T PRK07229 530 GENYGQGSSREHAALAPRYLGVKAVLAKSFAR 561 (646)
T ss_pred cCccCCCCchHHHHHHHHHHCCCEEEEeCHHH
Confidence 99999999999999999999999999999985
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=4e-150 Score=1300.55 Aligned_cols=560 Identities=31% Similarity=0.476 Sum_probs=485.2
Q ss_pred HHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 003617 62 KDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (807)
Q Consensus 62 ~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~ 138 (807)
|++||||+.|.... ++.+|.++||||++||+||++++++|++| |.+ ++.|.+ +.+++||++|+..
T Consensus 1 Tl~eKIl~~h~~~~~~~~G~~v~~~vD~v~~hD~Tg~~a~~~~~~~-------g~~--~v~~~~-~~~~~DH~~~~~d-- 68 (658)
T TIGR01342 1 TLAEKIIDDHLVEGDLEPGEEIAIEIDQTLSQDATGTMCWLEFEAL-------EMD--EVKTEL-AAQYCDHNMLQFD-- 68 (658)
T ss_pred CHHHHHHHHhhCCCCCCCCCEEEEEccEEEEeccchHHHHHHHHHc-------CCC--ccCCCC-eEEECCCCCCCCC--
Confidence 46899999886533 56689999999999999999999998765 443 344553 6789999988753
Q ss_pred chHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccCeEEecCCCCcccCcc
Q 003617 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGL 218 (807)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~PdtvvGtDSHT~~~Gal 218 (807)
.+|.|+|+||+|.+++| |+.|++||+||||||++|+|++ +| +++|||||||||+|||
T Consensus 69 -------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~~a~-----PG----~~ivGtDSHT~t~Gal 125 (658)
T TIGR01342 69 -------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHKENFAA-----PG----KTLLGSDSHTPTAGGL 125 (658)
T ss_pred -------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEchhhccC-----CC----CEEEecCcCcCCCCcc
Confidence 16789999999999999 5789999999999999997664 33 6899999999999999
Q ss_pred cceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhh
Q 003617 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRA 298 (807)
Q Consensus 219 G~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRa 298 (807)
|+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||+++||
T Consensus 126 G~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~ 205 (658)
T TIGR01342 126 GMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILELLRRLSVKGGLGKIFEYFGEGVEELSVPERA 205 (658)
T ss_pred cccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHHHHHHHhcccCcceEEEEEecCCcCccCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCC
Q 003617 299 TIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 378 (807)
Q Consensus 299 TI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~ 378 (807)
|||||++|+|||+|+||+|++|++||+.++|.+++.. | .+|++|.|+++++||||+|||+||+|+
T Consensus 206 Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l-----~~D~~a~Y~~~i~iDls~leP~va~P~ 270 (658)
T TIGR01342 206 TITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L-----LADADAEYADEIEIDLSDLEPLIAEPH 270 (658)
T ss_pred hhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c-----cCCCCCcEEEEEEEEccceeeeeeCCC
Confidence 9999999999999999999999999999998764321 1 479999999999999999999999999
Q ss_pred CCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHH
Q 003617 379 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAK 458 (807)
Q Consensus 379 ~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak 458 (807)
+|||++||+|+++ . +|++||||||||+|++||++||++|
T Consensus 271 ~Pd~v~~v~e~~g--------------~-------------------------~id~v~IGSCTn~~~~Dl~~aA~il-- 309 (658)
T TIGR01342 271 MPDNVVPVREIAG--------------I-------------------------EVDQVMIGSCTNGAFEDLLPAAKLL-- 309 (658)
T ss_pred CCCCeeEhHHhCC--------------c-------------------------eeeeEEEeCCCCCChHHHHHHHHHh--
Confidence 9999999999863 1 3569999999999999999999999
Q ss_pred HHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeecc
Q 003617 459 KACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSG 538 (807)
Q Consensus 459 ~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~ 538 (807)
+|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||||+|+|+++.+. ++++ +|||+
T Consensus 310 ----~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~gCg~CiG~~~~~~--------~~~~---~vst~ 374 (658)
T TIGR01342 310 ----EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIGIGFAPA--------SDGV---SLRSF 374 (658)
T ss_pred ----CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCCccccccCCCCCC--------CCcE---EEEcc
Confidence 89999999999999999999999999999999999999999999999999965532 3443 89999
Q ss_pred CCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccC-CCChhhHHHhhhcccCcchhhhcc
Q 003617 539 NRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDI-WPSSEEVAHVVQKSVLPDMFKATY 617 (807)
Q Consensus 539 NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~di-wP~~~ei~~~~~~~v~~~~~~~~y 617 (807)
||||+||||+..+.+|||||++||||||+|+| +||.. ++. .+| |+ ||+.++ |+.|...|
T Consensus 375 NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i-~dp~~--l~~-~~g------~~~~p~~~~----------p~~~~~~~ 434 (658)
T TIGR01342 375 NRNFEGRAGIEDAKVYLASPETATAAAIAGEI-IDPRD--LAD-DEG------DLEAIGFEM----------GEKFPGGY 434 (658)
T ss_pred CCCCCccCCCCCCeEEECCHHHHHHHHHcCCc-CCHHH--hcc-ccC------cccCCCCCC----------chhhcccc
Confidence 99999999998889999999999999999999 55542 432 244 45 886653 44555555
Q ss_pred ccccCCCcccccccC---CCCCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCC
Q 003617 618 EAITKGNPMWNQLSV---PSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDS 694 (807)
Q Consensus 618 ~~i~~~~~~w~~l~~---~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s 694 (807)
..++ |+.++. ++.+.+. |+||++||+|++++ .++++ |+++++|||||||||+||+.+
T Consensus 435 ~~~~-----~~~~~~~~~~~~~~~~----~p~i~~~p~~~~~~------~~i~g-rv~~~~gDnI~TD~I~Pa~~~---- 494 (658)
T TIGR01342 435 DAAD-----IDIIPKEEREDDDIIK----GPNIKPLPEFDPLG------ADIEG-ETALIMEDNITTDHIIPAGAD---- 494 (658)
T ss_pred cccc-----cccCCCCCCCCcceee----CCCCCCCCCCCCCc------cccCc-eEEEEcCCCCChhcCCCCCcc----
Confidence 5433 777665 3344443 89999999999875 35666 999999999999999999953
Q ss_pred HHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEE
Q 003617 695 PAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVIL 774 (807)
Q Consensus 695 ~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iiv 774 (807)
||.+ |+|.+.+.+++|..+ +++ +.+.+++|++.+.++|||
T Consensus 495 ----~l~~--------------r~~~~~l~~~~~~~~-------------------~p~---f~~~~~~~~~~~~~~iiV 534 (658)
T TIGR01342 495 ----ILKF--------------RSNIEAISEFTLHRI-------------------DDE---FAERAKAADEKGKAGIII 534 (658)
T ss_pred ----cccc--------------CCCHHHHhhheeeCC-------------------Cch---HHHHhhcccccCCceEEE
Confidence 5543 678887877777532 222 347788999999999999
Q ss_pred ecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 775 AGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 775 ag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
||+||||||||||||+++++|||+||||+|||+
T Consensus 535 aG~nfG~GSSREhAa~a~~~lGv~aVIA~SFar 567 (658)
T TIGR01342 535 AGENYGQGSSREHAALAPMFLGVEAVIAKSFAR 567 (658)
T ss_pred cCCcCCCCccHHHHHHHHHHHCCCEEEEecHHH
Confidence 999999999999999999999999999999985
No 12
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-137 Score=1137.21 Aligned_cols=624 Identities=30% Similarity=0.460 Sum_probs=528.7
Q ss_pred cHHHHHHHHhhhcCCC-------CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCC
Q 003617 60 KSKDVEKIIDWETTSP-------KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSV 132 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~-------~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v 132 (807)
+.+..|||+--+.... .+.++.++||||+|||.|++||+++|.. .|.. ++ .+|..++|||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms-------~Gl~--kv--avPstIhCdhli 126 (778)
T KOG0453|consen 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMS-------SGLK--KV--AVPSTIHCDHLI 126 (778)
T ss_pred CchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHHHHh-------cCcc--cc--cCCceEEeccee
Confidence 4688899886542211 2347999999999999999999999853 3654 22 357789999999
Q ss_pred CcCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCC
Q 003617 133 QVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSH 211 (807)
Q Consensus 133 ~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSH 211 (807)
.+...+..| +.+.-+.|+|.|.||..+.++| ||.||+||+||+||++||+| +||+ ++||||||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlEnY----------AfPG~m~igTDSH 190 (778)
T KOG0453|consen 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLENY----------AFPGLMMIGTDSH 190 (778)
T ss_pred eeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeeecc----------cCCcceEEeccCC
Confidence 988777655 5667789999999999999998 69999999999999999955 4785 68999999
Q ss_pred CcccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCcccc
Q 003617 212 TTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSE 291 (807)
Q Consensus 212 T~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~ 291 (807)
|+++||||+|++||||+||+++|+++||.++.|+++||+|||+|+.|+|+|||||++++.|..+|++|++||||||||.+
T Consensus 191 Tpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~Gv~s 270 (778)
T KOG0453|consen 191 TPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGPGVNS 270 (778)
T ss_pred CCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccceeEEEecCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCce
Q 003617 292 LSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVV 371 (807)
Q Consensus 292 LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~ve 371 (807)
||++.|+|||||++|.|||+|+||+|+.+++||+.|||.+. .+..++|.++ +. .+|++|.|+++||||||+|+
T Consensus 271 lSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Ydk~ieIdLstL~ 343 (778)
T KOG0453|consen 271 LSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYDKIIEIDLSTLE 343 (778)
T ss_pred eccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcceEEEEEhhhcc
Confidence 99999999999999999999999999999999999999975 3444555554 22 58999999999999999999
Q ss_pred eeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHH
Q 003617 372 PCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVML 451 (807)
Q Consensus 372 P~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~ 451 (807)
|+|+||++||-..|++++.+... -+|||. +|..++||||||+||+|+-.
T Consensus 344 P~vnGPfTpdl~~pvskl~e~~~--------------------------kn~wp~-----~i~~gligSCTNSsyeDm~r 392 (778)
T KOG0453|consen 344 PHVNGPFTPDLSTPVSKLGENSE--------------------------KNGWPI-----KIKVGLIGSCTNSSYEDMSR 392 (778)
T ss_pred cccCCCCCccccChHHHHhHHhh--------------------------hcCCce-----eeeeeEEEeecCccHHHHHH
Confidence 99999999999999999875311 145555 35578999999999999776
Q ss_pred HHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeE
Q 003617 452 GAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIV 531 (807)
Q Consensus 452 aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~ 531 (807)
+|. ++++|..+|+|.+ |.+.|+|||+||+..++|+|+++.|+++|+.+++++||||||+|.+-+ |++||.
T Consensus 393 aa~-iv~~a~~~glk~~--v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~d------vk~GE~- 462 (778)
T KOG0453|consen 393 AAD-IVKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRKD------IKKGEK- 462 (778)
T ss_pred HHH-HHHHHHhcCCCCC--cceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCccccccccc------ccCCCc-
Confidence 665 5599977776555 999999999999999999999999999999999999999999996621 445555
Q ss_pred EEEeeccCCCCCCCCCCCC-CceEecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhcccCc
Q 003617 532 AAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLP 610 (807)
Q Consensus 532 ~~~VsS~NRNF~GR~g~~~-~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~ 610 (807)
.+.|+|+||||.|||+... ...||+||++|+|+||+|++.||+++|.| .++||+.|.|+. |..+|+++ +.++|
T Consensus 463 ntivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~---~g~d~ 536 (778)
T KOG0453|consen 463 NTIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK---KGFDP 536 (778)
T ss_pred CceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCCCcc---cccCC
Confidence 3458999999999997554 55799999999999999999999999999 788999999998 89999875 34555
Q ss_pred chhhhccccccCCCcccccccCCCCCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCC
Q 003617 611 DMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSI 690 (807)
Q Consensus 611 ~~~~~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i 690 (807)
. ...|+...... ....+..||+|+++|....|+ +|..+|++++.||+|+.++|||||||.||+
T Consensus 537 g--~~ty~ap~~~~---------~~~~v~v~p~s~rlqlLepF~-----~w~gkd~edl~ilikv~gkCttDhIsaaGp- 599 (778)
T KOG0453|consen 537 G--QDTYQAPPSSS---------SVVEVDVDPTSDRLQLLEPFD-----KWDGKDLEDLKILIKVKGKCTTDHISAAGP- 599 (778)
T ss_pred C--cccccCCCCCC---------CcceeecCCcccchhhcCCCC-----cccccccccceEEEEEecccCccccccCCc-
Confidence 3 23344321111 124567799999999988886 467789999999999999999999999997
Q ss_pred CCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCc
Q 003617 691 HKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHD 770 (807)
Q Consensus 691 ~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~ 770 (807)
||+++|+...-+|.+ | |...|+- ..+-.+..++.+||.+++++.|+.||+.|++
T Consensus 600 --------wlkY~Ghl~nisnn~---------~-------igain~E--n~e~n~~~n~~~ge~~~vp~~~~~yk~~g~~ 653 (778)
T KOG0453|consen 600 --------WLKYRGHLENISNND---------L-------IGAINKE--NGEANCVKNYLTGEFGTVPDTARDYKKHGIR 653 (778)
T ss_pred --------ceeccchhhhcccch---------h-------hhhcchh--hhhhhhhhhccccccCCcCchhhhHHhcCce
Confidence 999998765443322 0 1111221 1122356677899999999999999999999
Q ss_pred eEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 771 TVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 771 ~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
||+|+++|||+||||||||..||.||.++||.+|||+
T Consensus 654 wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFar 690 (778)
T KOG0453|consen 654 WVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFAR 690 (778)
T ss_pred eEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHH
Confidence 9999999999999999999999999999999999985
No 13
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.5e-135 Score=1177.51 Aligned_cols=585 Identities=23% Similarity=0.350 Sum_probs=458.4
Q ss_pred HHHHHHHHhhhc-----CC--CCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCC
Q 003617 61 SKDVEKIIDWET-----TS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQ 133 (807)
Q Consensus 61 ~~~ie~il~~~~-----~~--~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~ 133 (807)
|+++||||+.|. +. .++.+|.++||++|+||.|+++++ +|. ++|.+ +..+|+. +.+++||++|
T Consensus 2 ~Tl~EKIl~~h~v~~~~g~~v~~G~~i~i~vD~~l~hD~t~p~~~-~~~-------~~g~~-~V~~p~~-~v~~~DH~v~ 71 (712)
T TIGR00139 2 QNLTEKIVQKYAVGLPEGKFVHSGDYVSIKPAHCMSHDNSWPCAL-KFM-------GIGAS-KIHNPDQ-IVMTLDHDIQ 71 (712)
T ss_pred CCHHHHHHHHhcccccCCcccCCCCEEEEecCEEEEEeccHHHHH-HHH-------HcCCC-ccCCCCC-EEEEcCCCCC
Confidence 678999999886 32 256789999999999999999853 453 35764 5778865 6789999999
Q ss_pred cCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCC
Q 003617 134 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHT 212 (807)
Q Consensus 134 ~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT 212 (807)
.... +|.+.|+|++..+++| +|+|+|||+||||||++| +|+++|+ ++|||||||
T Consensus 72 ~~~~---------------~~~~~~~~l~~fAkk~-Gi~f~~~g~GI~Hqv~~E---------~g~a~PG~~ivGsDSHT 126 (712)
T TIGR00139 72 NKSD---------------KNLKKYKNIEEFAKKH-GIDFYPAGRGIGHQIMIE---------EGFAFPGNLAVASDSHS 126 (712)
T ss_pred CCCH---------------HHHHHHHHHHHHHHHh-CCeEECCCCCeEeEeecc---------cCcccCCeEEEccCcCc
Confidence 8742 3344455555555566 589999999999999999 7899996 579999999
Q ss_pred cccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEec--Cccc
Q 003617 213 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYG--EGMS 290 (807)
Q Consensus 213 ~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G--~gv~ 290 (807)
||+||||+||||||++|++++|+||++|+++||+|+|+|+|+|++|||+|||||+|+++|+++|++||+|||+| +||+
T Consensus 127 ~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL~l~~~l~~~g~~g~~iEf~G~~~gv~ 206 (712)
T TIGR00139 127 NMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSEDSLN 206 (712)
T ss_pred CccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHHHHHHHhccCCcceEEEEEecCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cCChhhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcc--------hHHHHHHHHH---HhhccccCCCCCCCCcc
Q 003617 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDD--------TVSMIESYLR---ANKMFVDYSEPQSERVY 359 (807)
Q Consensus 291 ~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~--------~~~~~~~y~~---~~~l~~~~~~~D~~a~Y 359 (807)
+||+++|+|||||++|+|||+|+||+|++|++||+.++|... .....++|.+ +...|. +..+|++|.|
T Consensus 207 ~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~l~aD~~A~Y 285 (712)
T TIGR00139 207 ALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAERFTHPALEEKAEI-PLKADKDAHY 285 (712)
T ss_pred cCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchhHHHHHHHHHHHHhhc-cCCCCCCCCE
Confidence 999999999999999999999999999999999999976411 0011122221 111122 2358999999
Q ss_pred cEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEec
Q 003617 360 SSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAIT 439 (807)
Q Consensus 360 ~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~Ig 439 (807)
+++++||||+|+|+||+|++|++++||+++... + -+|++||||
T Consensus 286 ~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------------------------~~Id~~~IG 328 (712)
T TIGR00139 286 AKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------------------------IKIDKAYLV 328 (712)
T ss_pred EEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C-------------------------ceeeeEEEe
Confidence 999999999999999999999999999987420 1 146799999
Q ss_pred cCCCCCChhHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCC
Q 003617 440 SCTNTSNPSVMLGAALVAKKACELG---LEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD 516 (807)
Q Consensus 440 SCTN~s~~dl~~aA~lLak~A~~~G---~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~ 516 (807)
||||+|++||+.||.+|.++|+++| +||+|+||++|+|||++|+++|+++|++++|.+|||.|.++||++|||++++
T Consensus 329 SCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~Gl~~~l~~AGa~i~~~gCg~CiG~~~~ 408 (712)
T TIGR00139 329 SCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAG 408 (712)
T ss_pred cCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCC
Confidence 9999999999999999988888763 7999999999999999999999999999999999999999999999999987
Q ss_pred CChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCCcccCCCCceeecccCCCC
Q 003617 517 IDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPS 596 (807)
Q Consensus 517 l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~~~~G~~v~l~diwP~ 596 (807)
+.+ ++++ +|||+||||+||||+..+.+|||||++||||||+|+| +||..+.. + +=||.
T Consensus 409 ~~~-------~gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I-----tdPr~~~~---~----~~~~~ 466 (712)
T TIGR00139 409 LLE-------PGEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI-----SGPAEVLS---P----EGWTE 466 (712)
T ss_pred CCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc-----CCHHHHhc---c----ccccc
Confidence 653 3555 7899999999999988889999999999999999999 56653320 0 01221
Q ss_pred h-----hhHHHhhhcccCcchhhhccccc---cCCCcccccccCCCCCccccCCCCceec--CCCCCCCCCCCCCCCCCc
Q 003617 597 S-----EEVAHVVQKSVLPDMFKATYEAI---TKGNPMWNQLSVPSGTLYAWDPKSTYIH--EPPYFKDMTMSPPGPHGV 666 (807)
Q Consensus 597 ~-----~ei~~~~~~~v~~~~~~~~y~~i---~~~~~~w~~l~~~~~~~~~wd~~styi~--~pp~f~~~~~~~~~~~~i 666 (807)
. +.+.......++++++...-..+ ....+.-.+...++ +.-+. ..|-++ +.++.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~~~~ 530 (712)
T TIGR00139 467 IIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA---------QEESEQGLTEILE-------GFPEE 530 (712)
T ss_pred ccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc---------cchhccCCCCcCC-------CCCce
Confidence 0 01111111112333332110000 00001111111111 11111 122333 33467
Q ss_pred cCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCce
Q 003617 667 KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT 746 (807)
Q Consensus 667 ~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~ 746 (807)
...+++.+.||||+||||+|++ ||....++ .|.|.++.|.+++
T Consensus 531 i~g~v~~~~gdnI~TD~I~P~~----------~~~~~~~~-------------~~~l~~~~~~~~d-------------- 573 (712)
T TIGR00139 531 FSGELVFCDADNINTDGIYPGK----------YTYQDDVP-------------KEKMAQVCMENYD-------------- 573 (712)
T ss_pred EEEEEEEcCCCCCchhhccchh----------hcccCCCC-------------HHHHHHhhccCCC--------------
Confidence 7889999999999999999996 87332222 3457778887553
Q ss_pred EecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 747 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 747 ~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.++++. .|||||+|||||||||||+++++.+||+||||+|||+
T Consensus 574 -----------p~f~~~~~~g---~iiVaG~NfG~GSSREhA~~al~~~Gi~~ViA~SFar 620 (712)
T TIGR00139 574 -----------AEFRTKAHEG---DILVSGFNFGCGSSREQAATAILAKGINLVVSGSFGN 620 (712)
T ss_pred -----------cchhhcCCCC---CEEEeCCccCCCCcHHHHHHHHHHcCCcEEEEchHHH
Confidence 2455677764 4999999999999999999999999999999999985
No 14
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.3e-134 Score=1174.99 Aligned_cols=602 Identities=21% Similarity=0.266 Sum_probs=477.9
Q ss_pred cHHHHHHHHhhhcCCCCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 003617 60 KSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~ 139 (807)
++|++||||+.|.....+..|.+++|++++||.|+++++..|.+ +|.+ ++ | +|+.+++||++++...++
T Consensus 34 ~~TlaeKIL~~h~~~~~g~~v~~~vD~~~~~D~t~~~~~~~f~~-------~G~~--~v-p-~~~v~~~DH~~~~~~g~~ 102 (751)
T PRK11413 34 KGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIIQTAKA-------SGME--RF-P-LPYVLTNCHNSLCAVGGT 102 (751)
T ss_pred hCCHHHHHHHHhhCCCCCCEEEEEcceeeeehhhHHHHHHHHHH-------cCCC--cC-C-CCEEEECCCCCcCCCCCC
Confidence 56899999999977666667999999999999999999887754 4764 44 4 689999999999875443
Q ss_pred hHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCcc
Q 003617 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGL 218 (807)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Gal 218 (807)
.|.++|.|++..+++|+ +.|+|||+||||||++|+|+ .| +++|||||||| +|||
T Consensus 103 -------------~n~~~~~~~~~~a~k~G-i~f~~pg~GI~Hqv~~E~~a----------~PG~~ivGtDSHT~-~Gal 157 (751)
T PRK11413 103 -------------INEDDHVFGLSAAQKYG-GIFVPPHIAVIHQYMREMMA----------GGGKMILGSDSHTR-YGAL 157 (751)
T ss_pred -------------ccHHHHHHHHHHHHHcC-CcEECCCCCeECcCchhhcc----------CCCcEEEeeCcCcc-cchh
Confidence 34467777777777774 68999999999999999655 46 58999999996 9999
Q ss_pred cceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCc-ccEEEEEecCccccCChhhh
Q 003617 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGV-VGMFVEFYGEGMSELSLADR 297 (807)
Q Consensus 219 G~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~-~gk~VEf~G~gv~~LS~~dR 297 (807)
|+|||||||+|++.+|+|++||+++||+|+|+|+|+|++|||||||||+|+++|+++|+ +||+|||+||||++||+++|
T Consensus 158 G~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDviL~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R 237 (751)
T PRK11413 158 GTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFR 237 (751)
T ss_pred hhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHHhhcCcccceEEEEECCccccCCHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 003617 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (807)
Q Consensus 298 aTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP 377 (807)
||||||++|+|||+||||+|++|++||+.++|.+.+.. | .+|++|.|+++++||||+|||+||+|
T Consensus 238 ~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~----------l-----~~D~~A~Yd~~ieiDLs~leP~VA~P 302 (751)
T PRK11413 238 NGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE----------L-----NPQPMAYYDGCISVDLSAIKPMIALP 302 (751)
T ss_pred hhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee----------c-----cCCCCCCeeEEEEEEcccceeeecCC
Confidence 99999999999999999999999999999998764311 1 47999999999999999999999999
Q ss_pred CCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccC--CCCEEEEEeccCCCCCChhHHHHHHH
Q 003617 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR--HGDVVIAAITSCTNTSNPSVMLGAAL 455 (807)
Q Consensus 378 ~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~--~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (807)
++|||++||+|+.+++.++++.. ..++..+ ......++. +. .+. .-.|+|||||||||||++|++.||++
T Consensus 303 ~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~-~~--ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~I 374 (751)
T PRK11413 303 FHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSL-LD--KIENGRLKVQQGIIAGCSGGNYENVIAAANA 374 (751)
T ss_pred CChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccc-cc--cccCCCcEeeeEEEecCCCCCHHHHHHHHHH
Confidence 99999999999998887766532 1111100 000011111 01 111 23789999999999999999999999
Q ss_pred HHHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEE
Q 003617 456 VAKKACELGLEVK-PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAA 534 (807)
Q Consensus 456 Lak~A~~~G~kv~-p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~ 534 (807)
| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .++++ |
T Consensus 375 L------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~i~~~gCgpCiG~~~~~--------~~ge~---~ 437 (751)
T PRK11413 375 L------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAIIRTAFCGPCFGAGDTP--------ANNGL---S 437 (751)
T ss_pred h------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCCchhhhhCcCCcC--------CCCCE---E
Confidence 9 999998 5799999999999999999999999999999999999999999997543 23555 7
Q ss_pred eeccCCCCCCCCCCCCCc-----eEecCHHHHHHHHHh-CccccCCCCCCcccCCCCceeecccCCCChhhHHHhhhccc
Q 003617 535 VLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSV 608 (807)
Q Consensus 535 VsS~NRNF~GR~g~~~~~-----~yLaSP~lVaA~Ala-G~I~~d~~~dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v 608 (807)
|+|+||||+||||+..++ +||+||+++||+|+. |+|+ +|...+. ++ |.++ ..+
T Consensus 438 isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it-----~p~~~~~----------~~---~~p~---~~~ 496 (751)
T PRK11413 438 IRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT-----SATELDC----------WD---NVPE---YAF 496 (751)
T ss_pred EeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC-----CHHHccc----------cc---cCCC---ccc
Confidence 899999999999998776 677779989999998 6994 5643321 00 1111 223
Q ss_pred Ccchhh-hccccccCCCcccccccCCCCCccccCCCCceecCCCCCCCCCCCCCCCCCccCcEEEEecCCCcc-cCcccc
Q 003617 609 LPDMFK-ATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSIT-TDHISP 686 (807)
Q Consensus 609 ~~~~~~-~~y~~i~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~it-TDhIsP 686 (807)
+..+|. ..|....+ +..+..|..-|.|++++... ++.+-..++|+.|++|+|| ||||||
T Consensus 497 ~~~~y~~~~~~~~~~------------------~~~~~~~~~gPni~~~p~~~-~l~~~~~~kv~~k~~D~itTTD~i~p 557 (751)
T PRK11413 497 DVTPYKNRVYQGFGK------------------GATQQPLIYGPNIKDWPEMG-ALTDNILLKVCSKILDPVTTTDELIP 557 (751)
T ss_pred CccccccccccCCCC------------------CCCcceEEeCcCCCCCCCCC-CCCCcEEEEEEEEeCCCCcccccccc
Confidence 443332 12211000 12345566666666665432 4456677899999999996 999999
Q ss_pred CCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCC---ceEecCCCcccchhhHHHh
Q 003617 687 AGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP---KTIHIPTGEKLSVFDAAMR 763 (807)
Q Consensus 687 ag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~---~~~~~~~g~~~~i~~~a~~ 763 (807)
||. ||.+ |||.+-+.+.+|.. ..|.+.. +... .-..+.+|. +++.|+.
T Consensus 558 aG~---------~l~~--------------Rsn~~~is~~~~~~--~d~~~~~-ra~~~~~~~~~~~~g~---~~~~~~~ 608 (751)
T PRK11413 558 SGE---------TSSY--------------RSNPLGLAEFTLSR--RDPGYVG-RSKAVAELENQRLAGN---VSELTEV 608 (751)
T ss_pred CCC---------cccc--------------ccCHHHHhhhhccc--cChhhHH-HHHHHhhhhhhhhcCC---cHHHHHH
Confidence 995 8888 57888888888843 3455542 1110 001123343 4566777
Q ss_pred h--------------hhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 764 Y--------------KNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 764 y--------------~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
| ++.+++|||+| +||||||||||||++|++||++||||+|||+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~iv~~-~nyG~GSSREhAAla~r~LGi~AVIAkSFAR 665 (751)
T PRK11413 609 FARIKQIAGQEHIDPLQTEIGSMVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYAT 665 (751)
T ss_pred HHhhhhccccccccccccCceEEEEE-eCCCCCccHHHHHHHHHHhCceEEEEeeehH
Confidence 6 55666766666 9999999999999999999999999999985
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=3.2e-132 Score=1085.94 Aligned_cols=400 Identities=76% Similarity=1.220 Sum_probs=388.7
Q ss_pred eeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcc
Q 003617 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (807)
Q Consensus 86 rvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (807)
||+|||+||+|+++|||||||+++++|+||+++||.+|++|++||++|++..+..+++.+|+..+++||.|||.|++|++
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cccccceeeCCCCceeecccccccceeeecC----CCccccCeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEe
Q 003617 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSM 241 (807)
Q Consensus 166 ~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~----~G~~~PdtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~ 241 (807)
++|.|++|+|||+||||||++|+||++++.+ .|+++|+++|||||||||+||||+||||||++|++++|+||++||
T Consensus 81 ~~~~~~~~~~pg~GI~Hqv~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHhCCCCCCCCCCCEeeeehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999843 589999999999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHH
Q 003617 242 VLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTL 321 (807)
Q Consensus 242 ~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~ 321 (807)
++||+|+|+|+|+|++|||+|||||+|++.|+.+|++|++|||+|||+++||+++|||||||++|+|||+|+||+|
T Consensus 161 ~vP~~i~V~l~G~l~~gVtaKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred CCCcEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccc
Q 003617 322 QYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRV 401 (807)
Q Consensus 322 ~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~ 401 (807)
+++++||||+|||+||+|++|||++||.
T Consensus 237 --------------------------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------- 264 (404)
T cd01586 237 --------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------- 264 (404)
T ss_pred --------------------------------------ceEEEEEcccceeeecCCCCcccccCcC--------------
Confidence 5679999999999999999999999982
Q ss_pred cCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHH
Q 003617 402 GFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGV 481 (807)
Q Consensus 402 ~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~ 481 (807)
++|++||||||||+|+||++.||++|+|||++||+||+||||++|+|||++
T Consensus 265 -----------------------------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~ 315 (404)
T cd01586 265 -----------------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRV 315 (404)
T ss_pred -----------------------------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHH
Confidence 147799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHH
Q 003617 482 VTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLV 561 (807)
Q Consensus 482 V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lV 561 (807)
|+++|+++|++++|.++||.|.+|||++|+|+++++.+.+++.+.+||+++++|||+||||+||||+..+++|||||++|
T Consensus 316 V~~~~~~~Gl~~~l~~aGa~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~v 395 (404)
T cd01586 316 VTKYLEASGLLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLV 395 (404)
T ss_pred HHHHHHHCChHHHHHHcCCEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHH
Confidence 99999999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred HHHHHhCcc
Q 003617 562 VAYALAGSV 570 (807)
Q Consensus 562 aA~AlaG~I 570 (807)
||+||+|+|
T Consensus 396 AAsAi~G~i 404 (404)
T cd01586 396 VAYALAGTV 404 (404)
T ss_pred HHHHhcccC
Confidence 999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=8.2e-123 Score=1036.71 Aligned_cols=452 Identities=25% Similarity=0.375 Sum_probs=396.0
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 003617 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~- 137 (807)
++|++|||++.+.... +++.+.++|||+++||+|+++++..| | ++|. +.++|. ++++++||++|++..
T Consensus 2 ~~Tl~eKI~~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~---~----~~g~--~v~~p~-~~~~~~DH~vp~~~~~ 71 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYEAEGETPLLYIDRHLIHEVTSPQAFEGL---R----QAGR--KVRRPQ-KTFATMDHNIPTQNRD 71 (465)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeeeeeecccchHHHHHHH---H----HcCC--CcCCCc-CEEEEeCCCCCCCCcc
Confidence 4689999999886643 46678899999999999999997443 3 3463 355665 689999999999764
Q ss_pred -cchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
+..++...|+.+++++|.++|.+ +| +++.+||+||||||++| +|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~v~~p~~GI~Hqv~~E---------~g~~~PG~~ivgtDSHT~t~ 134 (465)
T TIGR00170 72 FNIKDEVAKIQVTELEKNCKEFGV------RL--FDLHSVDQGIVHVMGPE---------QGLTLPGMTIVCGDSHTSTH 134 (465)
T ss_pred ccccCHHHHHHHHHHHHHHHHhCC------ee--eccCCCCCCEeCeEccc---------cCcccCCceEEecCCCcccc
Confidence 56677888999999999999875 22 45679999999999999 899999 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+||++||++
T Consensus 135 GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~ 214 (465)
T TIGR00170 135 GAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIEFCGEAIRDLSME 214 (465)
T ss_pred ccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCccCcceEEEEEEccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+|||+||||+|++|++||+.+++.+. .++|.+++.+|+.. .+|++|.|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va 289 (465)
T TIGR00170 215 GRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDKAVAYWKTL-KTDEGAVFDTVITLEANDISPQVT 289 (465)
T ss_pred HhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHHHHHhhhhc-cCCCCCceeEEEEEEcccceeeec
Confidence 9999999999999999999999999999998877543 37799999999754 579999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCcc--ccCCCCEEEEEeccCCCCCChhHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 453 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 453 (807)
+|++|+|++||+|+.+++....... ++......++|+|... .+.+++|++||||||||||++||++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA 359 (465)
T TIGR00170 290 WGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAA 359 (465)
T ss_pred CCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhccccCCcccCCCeEEEEEEecCCCCCHHHHHHHH
Confidence 9999999999999876554322110 1111112333444322 356789999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEE
Q 003617 454 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 533 (807)
Q Consensus 454 ~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~ 533 (807)
++| ||+||+||||++|+|||++|++||+++||+++|+++||.|.+||||+|+|+++++.++ +++
T Consensus 360 ~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~--- 423 (465)
T TIGR00170 360 AVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDRLPE-------GER--- 423 (465)
T ss_pred HHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---
Confidence 998 9999999999999999999999999999999999999999999999999999887644 454
Q ss_pred EeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 534 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 534 ~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
++||+||||+||||+. ..+|||||++||||||+|+|
T Consensus 424 ~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~i 459 (465)
T TIGR00170 424 CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHF 459 (465)
T ss_pred EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCcee
Confidence 6789999999999985 57799999999999999999
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=1.1e-122 Score=1037.01 Aligned_cols=452 Identities=28% Similarity=0.403 Sum_probs=400.7
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 003617 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~ 138 (807)
+||++|||++.|.... ++.+|.++|||+++||+|+++++.+|++| |. ..+||.++ .+++||++|++++.
T Consensus 3 ~~Tl~eKI~~~h~~~~~~~g~v~~~vD~~~~hD~t~p~a~~~~~~~-------g~--~v~~P~~~-~~~~DH~vp~~~~~ 72 (471)
T PRK12466 3 PRTLYDKLWDSHTVARLDDGHVLLYIDRHLLNEYTSPQAFSGLRAR-------GR--TVRRPDLT-LAVVDHVVPTRPGR 72 (471)
T ss_pred CcCHHHHHHHHhcCCCCCCCEEEEeccEEEEeccccHHHHHHHHHc-------CC--cccCCCCe-EEEeCCCCCCCccc
Confidence 5789999999986532 34489999999999999999999998653 43 47899875 58999999999732
Q ss_pred ---chHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCCcc
Q 003617 139 ---SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTM 214 (807)
Q Consensus 139 ---~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~ 214 (807)
..+....|+.+++++|.++|.+ +| +++.+||+||||||++| +|+++|+ ++|||||||||
T Consensus 73 ~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~~~~p~~GI~Hqv~~E---------~G~~~PG~~ivg~DSHT~t 135 (471)
T PRK12466 73 DRGITDPGGALQVDYLRENCADFGI------RL--FDVDDPRQGIVHVVAPE---------LGLTLPGMVIVCGDSHTTT 135 (471)
T ss_pred cccccCHHHHHHHHHHHHHHHHcCC------ee--eccCCCCCCEEeEEccc---------cCcccCCceEEccCCCcCC
Confidence 3446678888999999998864 12 45678999999999999 8999997 69999999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCCh
Q 003617 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSL 294 (807)
Q Consensus 215 ~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~ 294 (807)
+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+||||++||+
T Consensus 136 ~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~ 215 (471)
T PRK12466 136 YGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAGEAIRALSM 215 (471)
T ss_pred cChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeec
Q 003617 295 ADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCV 374 (807)
Q Consensus 295 ~dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~v 374 (807)
++|||||||++|+|||+||||+|++|++||+.++|.++. ++|.+++..|+.. .+|++|.|+++++||||+|||+|
T Consensus 216 ~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~v 290 (471)
T PRK12466 216 EGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDAALAYWRTL-RSDADAVFDREVEIDAADIAPQV 290 (471)
T ss_pred HHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHHHHhhhhcc-cCCCCCceEEEEEEEcccceEee
Confidence 999999999999999999999999999999999998753 4799999999754 57999999999999999999999
Q ss_pred cCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccc--cCCCCEEEEEeccCCCCCChhHHHH
Q 003617 375 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQ--LRHGDVVIAAITSCTNTSNPSVMLG 452 (807)
Q Consensus 375 AgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~--l~~g~V~~a~IgSCTN~s~~dl~~a 452 (807)
|+|++|+|++||+|+.+++.++++.. ++......++|++.... +.+..|++||||||||||+|||+.|
T Consensus 291 a~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~y~~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~a 360 (471)
T PRK12466 291 TWGTSPDQAVPITGRVPDPAAEADPA----------RRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAA 360 (471)
T ss_pred cCCCChhhceEccccCcChhhhcchh----------hhhhhhhhhhhcccCCCcccCCceEEEEEEeccCCCChHHHHHH
Confidence 99999999999999998887655421 01111223455544322 5577999999999999999999999
Q ss_pred HHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEE
Q 003617 453 AALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVA 532 (807)
Q Consensus 453 A~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~ 532 (807)
|++| ||+||+||||++|+|||++|+++|+++||+++|.++||.|.+||||+|+|+++++.++ +|+
T Consensus 361 A~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~~i~~~gCg~C~G~~~~~~~~-------ge~-- 425 (471)
T PRK12466 361 AAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMCLAMNDDVLAP-------GER-- 425 (471)
T ss_pred HHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE--
Confidence 9999 9999999999999999999999999999999999999999999999999999876543 565
Q ss_pred EEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 533 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 533 ~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
+|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 426 -~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I 461 (471)
T PRK12466 426 -CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHI 461 (471)
T ss_pred -EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEe
Confidence 789999999999999 456799999999999999999
No 18
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=5e-122 Score=1031.66 Aligned_cols=452 Identities=26% Similarity=0.361 Sum_probs=399.0
Q ss_pred cHHHHHHHHhhhcCCC-CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc-
Q 003617 60 KSKDVEKIIDWETTSP-KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA- 137 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~-~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~- 137 (807)
+++++||||+.+.... .++.+.+++||+++||+|+++++..|. ++|. +.++|+. +.+++||++|++..
T Consensus 2 ~~tl~eKIl~~h~~~~~~g~~v~~~vD~~~~hD~t~~~a~~~~~-------~~g~--~v~~p~~-~~~~~DH~v~~~~~~ 71 (466)
T PRK05478 2 GKTLYDKLWDAHVVHEEEDGPDLLYIDRHLVHEVTSPQAFEGLR-------LAGR--KVRRPDL-TFATMDHNVPTTDRD 71 (466)
T ss_pred CCCHHHHHHHHhcCCCCCCCEEEEEeccceeecccHHHHHHHHH-------HcCC--CccCCCC-eEEEcCCCCCCCccc
Confidence 4789999999986643 456789999999999999999985543 3464 4678874 77899999999975
Q ss_pred -cchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 138 -RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 138 -~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
...++...|+.+++++|.+||.|. | +++.+||+||||||++| .|+++| +++|||||||||+
T Consensus 72 ~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hqv~~E---------~g~~~PG~~ivGtDSHT~t~ 134 (466)
T PRK05478 72 LPIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHVVGPE---------QGLTLPGMTIVCGDSHTSTH 134 (466)
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCeEccc---------cccccCCceEEecCCCcccc
Confidence 466777889999999999998771 2 45567899999999999 789999 6899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|+.+|++|++|||+||||++||++
T Consensus 135 GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aKDviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~ 214 (466)
T PRK05478 135 GAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEFAGEAIRALSME 214 (466)
T ss_pred chhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCcceEEEEEECccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|+|||||++|+|||+||||+|++|++||+.+++.. .+++|.+++.+|+.. .+|++|+|+++++||||+|||+||
T Consensus 215 ~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va 289 (466)
T PRK05478 215 GRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDKAVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVT 289 (466)
T ss_pred HHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHHHHHhhhcc-cCCCCCceeEEEEEEcccceeeec
Confidence 999999999999999999999999999999554432 577899999999764 579999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCcc--ccCCCCEEEEEeccCCCCCChhHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPA--QLRHGDVVIAAITSCTNTSNPSVMLGA 453 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~--~l~~g~V~~a~IgSCTN~s~~dl~~aA 453 (807)
+|++|||++||+|+.+++.+++.... +.......+|++... .+.+++|++||||||||||+||+++||
T Consensus 290 ~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA 359 (466)
T PRK05478 290 WGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYMGLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred CCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhcccccCCccCCCeEEEEEEecCCCCCcHHHHHHH
Confidence 99999999999999988887665431 111122334443321 256789999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEE
Q 003617 454 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAA 533 (807)
Q Consensus 454 ~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~ 533 (807)
++| ||+||+||||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++++.. .+|++
T Consensus 360 ~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~~~l-------~~ge~--- 423 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDKL-------PPGER--- 423 (466)
T ss_pred HHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCCC-------CCCCE---
Confidence 999 99999999999999999999999999999999999999999999999999985543 35776
Q ss_pred EeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 534 AVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 534 ~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
+|||+||||+||||+.. .+|||||++||||||+|+|
T Consensus 424 ~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~I 459 (466)
T PRK05478 424 CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHF 459 (466)
T ss_pred EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCc
Confidence 78999999999999655 5899999999999999999
No 19
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=9.9e-123 Score=1039.99 Aligned_cols=456 Identities=39% Similarity=0.627 Sum_probs=368.8
Q ss_pred HHHHHHHhhhcCCC----CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 003617 62 KDVEKIIDWETTSP----KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (807)
Q Consensus 62 ~~ie~il~~~~~~~----~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~ 137 (807)
|+.|||++.+.... .+.+|.++|||+|+||+||++++.+|++|+. .+++|.. +++++||++|++..
T Consensus 1 Tl~EKI~~~h~~~~~~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~---------~v~~p~~-v~~~~DH~vp~~~~ 70 (465)
T PF00330_consen 1 TLAEKILARHAGREVVARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGE---------KVRDPDK-VVLVIDHSVPADDI 70 (465)
T ss_dssp -HHHHHHHCCCTHCCHTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCH---------CCHSTTS-EEEE--SS--BSS-
T ss_pred ChHHHHHHHHhCCCccCCCCeEEEEEeceEEeecccCcccchhHHHCCC---------ceecCCC-ceEEecCccccccc
Confidence 57899998885532 3458999999999999999999999987642 2456654 78999999999976
Q ss_pred cchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CceeecccccccceeeecCCCccccC-eEEecCCCCccc
Q 003617 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMI 215 (807)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG-~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~ 215 (807)
+.. |+..++++|+++|+|++|.+++|+ +.+++|| .||||||++| .|++.|+ ++|||||||||+
T Consensus 71 ~~~-----~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~~E---------~g~~~PG~~vvg~DSHT~t~ 135 (465)
T PF00330_consen 71 GSA-----NLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVLPE---------EGLVLPGMTVVGTDSHTCTY 135 (465)
T ss_dssp HHH-----HHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHHHH---------HTT-STTEEEEESSTTGGGG
T ss_pred cch-----hcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeeehh---------hccccceeEEEeCCCCcchh
Confidence 433 778899999999999999999986 5555555 5999999999 7888995 799999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+||||++||++
T Consensus 136 GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDviL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~ 215 (465)
T PF00330_consen 136 GALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDVILHIIGRLGADGATGKAVEFFGPGVESLSMD 215 (465)
T ss_dssp GGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHHHHHHHHHHHCCTTTTEEEEEESGGGGGS-HH
T ss_pred hhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHHHHHHHHhhhhhccCCeEEEEEChhhhhcCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+||++||||+|++|++||+.++|.+...++.+.|.+.+.|| +|++|.|+++++||||+|||+||
T Consensus 216 ~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~~l~-----~D~dA~Y~~~i~iDls~leP~va 290 (465)
T PF00330_consen 216 DRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQGLK-----SDPDAEYDKVIEIDLSELEPQVA 290 (465)
T ss_dssp HHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHGCSS-------TT---SEEEEEEGGG-SSEEE
T ss_pred hhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhhhcc-----CCCccCeeEEEEEEcCccccccc
Confidence 9999999999999999999999999999999999987777777888878876 78899999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCC--ccccCCCCEEEEEeccCCCCCChhHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT--PAQLRHGDVVIAAITSCTNTSNPSVMLGA 453 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~l~~g~V~~a~IgSCTN~s~~dl~~aA 453 (807)
+|++|||++||+|+.+++.++++.. .+......++|++. ...+.+++|++||||||||||+||+++||
T Consensus 291 ~P~~P~~~~~v~e~~~~~~~~~~~v----------~~~~~~kal~y~~~~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA 360 (465)
T PF00330_consen 291 GPHSPDNVVPVSEVAPDFASILDPV----------EREAAEKALDYMGLKPGQELEGTKIDQAFIGSCTNGRNEDLRAAA 360 (465)
T ss_dssp -SSSTTSEEEHHHHHHHHHHHH--------------CCGCC-EEEECHTTEEEEEETTBEEEEEEETTTSCTHHHHHHHH
T ss_pred cCCCCcccccccccccccccccccc----------cccccccccccccccccccccceeeeEEEEcCCcCCCHHHHHHHH
Confidence 9999999999999999888665421 11111234555433 35677899999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhcc-CCeEE
Q 003617 454 ALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITE-NDIVA 532 (807)
Q Consensus 454 ~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~-~~~~~ 532 (807)
++|+++|+ ++++|+||++|+|||++|+++|+++||+++|+++||.|.+|||++|+|+++ +.+. +.+ +++
T Consensus 361 ~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v~~~gC~~C~G~~~-~~~~----~~~~~~~-- 430 (465)
T PF00330_consen 361 GILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEVRGPGCGPCIGMSG-LPDV----LAPLGEV-- 430 (465)
T ss_dssp HHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE--SSSGGGGTSBS---CC----HCCTTEE--
T ss_pred HHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEEecCCccEEECCCC-CCcc----cccccce--
Confidence 99977765 799999999999999999999999999999999999999999999999995 2211 222 443
Q ss_pred EEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhC
Q 003617 533 AAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 568 (807)
Q Consensus 533 ~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG 568 (807)
+|||+||||+||||+..+.+|||||++||||||+|
T Consensus 431 -~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 431 -CVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp -EEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred -EEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 89999999999999999999999999999999998
No 20
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=1e-120 Score=1005.00 Aligned_cols=409 Identities=32% Similarity=0.515 Sum_probs=364.6
Q ss_pred eeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcc
Q 003617 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (807)
Q Consensus 86 rvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (807)
|||+||+||++++++|++| |. ++.++| .++++||++|++.++.++ ...++.+|.++|+|++|.+
T Consensus 1 rv~~~D~tg~~a~~~f~~~-------g~-~~v~~p---~~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GL-PKVAVP---STIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CeeEEecccHHHHHHHHHh-------CC-CCCCCC---CeEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHH
Confidence 7999999999999999754 54 445554 478999999998766443 4667889999999999999
Q ss_pred cccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecC
Q 003617 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (807)
Q Consensus 166 ~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vP 244 (807)
++| ||+|++||+||||||++|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++|
T Consensus 65 ~~~-gi~~~~~g~GI~Hqv~~E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vP 133 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLEN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCP 133 (412)
T ss_pred HHc-CCeEECCCCCeeceEchhh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCC
Confidence 999 8999999999999999994 56786 69999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHH
Q 003617 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (807)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL 324 (807)
|+|+|+|+|+|++|||||||||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||
T Consensus 134 e~i~v~l~G~l~~gV~aKDliL~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl 213 (412)
T cd01584 134 KVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYL 213 (412)
T ss_pred CEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCC
Q 003617 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (807)
Q Consensus 325 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~ 404 (807)
+.++|+++ ++++++|+ ++.+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.+
T Consensus 214 ~~~~~~~~-~~~~~~y~-~~~l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------- 277 (412)
T cd01584 214 KATGRAEI-ADLADEFK-DDLLV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------- 277 (412)
T ss_pred HhcCchHH-HHHHHHHH-hcccC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc---------
Confidence 99999865 67888887 34454 7889999999999999999999999999999999999864321
Q ss_pred CcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 003617 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484 (807)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~ 484 (807)
.|++ .+|++||||||||+|+|||..| +.++|+|+++|+|++ ||++|+|||++|++
T Consensus 278 -----------------~g~~-----~~Id~a~IGSCTNgr~~Dl~~A-A~ilk~a~~~g~~v~--vr~~v~PgS~~V~~ 332 (412)
T cd01584 278 -----------------NGWP-----LDLRVGLIGSCTNSSYEDMGRA-ASIAKQALAHGLKCK--SIFTITPGSEQIRA 332 (412)
T ss_pred -----------------cCCc-----eeEEEEEEeccCCCChHHHHHH-HHHHhhHHhCCCCCC--CcEEEeCCCHHHHH
Confidence 1122 1588999999999999995555 567799999999999 89999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCC-CChHHHhhhccCCeEEEEeeccCCCCCCCC-CCCCCceEecCHHHHH
Q 003617 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGD-IDDAVAAAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVV 562 (807)
Q Consensus 485 ~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~-l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~-g~~~~~~yLaSP~lVa 562 (807)
+|+++||+++|.++||.|.+||||+|+|++++ .. .+++.. ++|||+||||+||| |.....+|||||++||
T Consensus 333 ~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-------~~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~va 404 (412)
T cd01584 333 TIERDGLLQTFRDAGGIVLANACGPCIGQWDRKDI-------KKGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVT 404 (412)
T ss_pred HHHHCCcHHHHHHcCCEEcCCcccccccCCCCccc-------CCCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHH
Confidence 99999999999999999999999999999875 22 223321 47899999999999 4445679999999999
Q ss_pred HHHHhCcc
Q 003617 563 AYALAGSV 570 (807)
Q Consensus 563 A~AlaG~I 570 (807)
||||+|++
T Consensus 405 AsAi~G~~ 412 (412)
T cd01584 405 AMAIAGTL 412 (412)
T ss_pred HHHhcccC
Confidence 99999985
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=1.5e-116 Score=966.01 Aligned_cols=380 Identities=28% Similarity=0.428 Sum_probs=343.3
Q ss_pred eeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcc
Q 003617 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (807)
Q Consensus 86 rvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (807)
|+++||+|+++++..| |+ +|.+ ..+||++ +++++||++|++ +....|+.+++.+|.++|.
T Consensus 1 ~~~~hD~t~p~a~~~~---~~----~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g------ 60 (382)
T cd01583 1 LHLVHDVTSPQAFEGL---RE----AGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG------ 60 (382)
T ss_pred CEEEEeccHHHHHHHH---HH----hCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC------
Confidence 6899999999998443 43 4542 3556653 689999999998 3445666777777776653
Q ss_pred cccccceeeCC-CCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeec
Q 003617 166 NAFHNMLVVPP-GSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (807)
Q Consensus 166 ~~f~~~~~~pp-G~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~v 243 (807)
++++++ |+||||||++| +|++.| +++|||||||||+||||+||||||++|++++|+||++||++
T Consensus 61 -----i~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~v 126 (382)
T cd01583 61 -----INFFDVGRQGICHVILPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRV 126 (382)
T ss_pred -----cccccCCCCCEeeEEecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeC
Confidence 344567 99999999999 788889 58999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHH
Q 003617 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (807)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~Y 323 (807)
||+|+|+|+|+|++|||||||||+|++.|+.+|++||+|||+|+||++||+++|||||||++|+|||+||||+||+|++|
T Consensus 127 Peti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~y 206 (382)
T cd01583 127 PETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEY 206 (382)
T ss_pred CcEEEEEEEeecCCCcCHHHHHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccC
Q 003617 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (807)
Q Consensus 324 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~ 403 (807)
|+.++|++. + .+ .+|++|.|+++++||||+|||+||+|++|||++||+|+.+.
T Consensus 207 L~~~~~~~~--~----------~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~~----------- 259 (382)
T cd01583 207 LKGRGKAYW--K----------EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEGI----------- 259 (382)
T ss_pred HHhcCccch--h----------hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCCc-----------
Confidence 999988631 1 12 47999999999999999999999999999999999998731
Q ss_pred CCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 003617 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (807)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (807)
+|++||||||||+|+||+++||++| ||+||+|+||++|+|||++|+
T Consensus 260 ----------------------------~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~ 305 (382)
T cd01583 260 ----------------------------KIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVY 305 (382)
T ss_pred ----------------------------ceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHH
Confidence 3779999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 003617 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (807)
Q Consensus 484 ~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (807)
++|+++|++++|+++||.|.+||||+|+|+++++. .+||+ +|||+||||+||||+..+.+|||||++|||
T Consensus 306 ~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAA 375 (382)
T cd01583 306 KQAEKEGLIEIFIEAGAEVRPPGCGACLGGHMGVL-------APGER---CVSTSNRNFKGRMGSPGARIYLASPATAAA 375 (382)
T ss_pred HHHHHCCcHHHHHHCCCEEeCCCcccccCCCCCcC-------CCCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 99999999999999999999999999999987763 35675 789999999999999888999999999999
Q ss_pred HHHhCcc
Q 003617 564 YALAGSV 570 (807)
Q Consensus 564 ~AlaG~I 570 (807)
|||+|+|
T Consensus 376 sAi~G~i 382 (382)
T cd01583 376 SAITGEI 382 (382)
T ss_pred HHhcccC
Confidence 9999986
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3e-116 Score=969.40 Aligned_cols=405 Identities=27% Similarity=0.416 Sum_probs=362.9
Q ss_pred HHHHHHHhhhcCC--CCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 003617 62 KDVEKIIDWETTS--PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (807)
Q Consensus 62 ~~ie~il~~~~~~--~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~ 139 (807)
+++||||+.+.+. .+++.+.+++|++++||.|+++++..|. ++|. +..+||+. +.+++||++|+....
T Consensus 1 Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g~-~~v~~P~~-v~~~~DH~~p~~~~~- 70 (412)
T TIGR01343 1 TIAEKILSKHSGKEVYAGDLIVAEIDQAMVHDITAPLAIRRLE-------EYGI-DKVFDPER-IVIVVDHVVPASTIK- 70 (412)
T ss_pred CHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcCC-CcCCCCCc-EEEEcCCCCCCCChh-
Confidence 4689999998764 2456788999999999999999987764 4465 35778874 788999999988643
Q ss_pred hHHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCc
Q 003617 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (807)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Ga 217 (807)
.+..++..++|.+. | ||. |++||+|||||+++| +|++.| +++|||||||||+||
T Consensus 71 -~a~~~~~~r~fa~~-------------~-gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~iig~DSHT~t~Ga 126 (412)
T TIGR01343 71 -AAEMQKLAREFVKK-------------T-GIKHFFDVGEGICHQVLPE---------EGLVKPGDLVVGADSHTCTYGA 126 (412)
T ss_pred -HHHHHHHHHHHHHH-------------c-CCceeecCCCCEEEEEchh---------hCcCCCCcEEEecCCCcCCcCc
Confidence 33455555666552 2 354 789999999999999 888999 689999999999999
Q ss_pred ccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhh
Q 003617 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (807)
Q Consensus 218 lG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR 297 (807)
||+||||||++|++.+|++|++||++||+|+|+|+|+|++||+||||||+|+++|+.+|++||+|||+|+|+++||+++|
T Consensus 127 lGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akDviL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R 206 (412)
T TIGR01343 127 LGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETIKNMTMEER 206 (412)
T ss_pred hhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHHHHHHHHHHhCcCCcceEEEEEECCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 003617 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (807)
Q Consensus 298 aTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP 377 (807)
||||||++|+||++|+||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 207 ~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~~------------~~----~~D~da~Y~~~i~iDls~leP~va~P 270 (412)
T TIGR01343 207 MTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPFR------------VY----KSDEDAEYAKEVEIDASQLEPVVAAP 270 (412)
T ss_pred hhhhccccccCceeeEecCcHHHHHHHHhhCccccc------------cc----CCCCCCCEEEEEEEEcccceeeEecC
Confidence 999999999999999999999999999999765321 12 47999999999999999999999999
Q ss_pred CCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHH
Q 003617 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 457 (807)
Q Consensus 378 ~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 457 (807)
++|+|++||+|+.+. .|+|||||||||+|++|+++||++|
T Consensus 271 ~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~il- 310 (412)
T TIGR01343 271 HNVDNVHPVSEVEGI---------------------------------------EVDQVFIGSCTNGRIEDLRVAAKIL- 310 (412)
T ss_pred CCCCcEEEhHHhCCC---------------------------------------eeeEEEEecCCCCChHHHHHHHHHH-
Confidence 999999999998631 3679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeec
Q 003617 458 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 537 (807)
Q Consensus 458 k~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS 537 (807)
+|+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++...+. +|++ +|||
T Consensus 311 -----~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~~pgCg~C~G~~~g~l~-------~ge~---~vsT 375 (412)
T TIGR01343 311 -----KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLGRHQGVLA-------PGEV---CIST 375 (412)
T ss_pred -----cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EEEe
Confidence 899999999999999999999999999999999999999999999999999754332 3565 7899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHHhCccc
Q 003617 538 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (807)
Q Consensus 538 ~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 571 (807)
+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 376 ~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 376 SNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred cCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999888889999999999999999993
No 23
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=5.7e-116 Score=968.69 Aligned_cols=406 Identities=30% Similarity=0.439 Sum_probs=363.3
Q ss_pred cHHHHHHHHhhhcCCC--CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 003617 60 KSKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~ 137 (807)
++|++||||+.+.... +++.+.+++|++++||.|+++++..|.+ +|.+ ..++|+. +.+++||++|+...
T Consensus 2 ~~Tl~eKIl~~h~~~~v~~G~~v~v~vD~~~~hD~t~p~a~~~~~~-------~g~~-~v~~P~~-~~~~~DH~~p~~~~ 72 (418)
T PRK00402 2 GMTLAEKILARHSGRDVSPGDIVEAKVDLVMAHDITGPLAIKEFEK-------IGGD-KVFDPSK-IVIVFDHFVPAKDI 72 (418)
T ss_pred CcCHHHHHHHHhcCCCCCCCCEEEEECCEEEEecccHHHHHHHHHH-------cCCC-ccCCCCc-EEEECCCCCCCCCh
Confidence 4789999999987643 4567889999999999999999877643 4553 4678874 78899999999864
Q ss_pred cchHHHHhhhHHHHHHhhhhhhhhhhcccccccce-eeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNML-VVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~-~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
..+..++..++|.|. | |++ |++||+|||||+++| +|++.| +++|||||||||+
T Consensus 73 --~~a~~~~~~r~fa~~-------------~-gi~~~~~~g~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (418)
T PRK00402 73 --KSAEQQKILREFAKE-------------Q-GIPNFFDVGEGICHQVLPE---------KGLVRPGDVVVGADSHTCTY 127 (418)
T ss_pred --hhHHHHHHHHHHHHH-------------c-CCcceeCCCCCEeeEehhh---------cCccCCCcEEEeCCCCcccc
Confidence 333455555655552 2 355 788999999999999 788899 5899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||+||||||+|++.|+.+|++||+|||+|+|+++||++
T Consensus 128 GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~ 207 (418)
T PRK00402 128 GALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKDVILHIIGDIGVDGATYKALEFTGETIEALSMD 207 (418)
T ss_pred CccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCccceEEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+|||+||||+|++|++||+.+++.+. .| ..+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~~-------------~~---l~~D~~a~Y~~~i~iDls~leP~va 271 (418)
T PRK00402 208 ERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRDY-------------KP---WKSDEDAEYEEVYEIDLSKLEPQVA 271 (418)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHHhhccccc-------------cc---ccCCCCCCEEEEEEEEcccceeeee
Confidence 9999999999999999999999999999999854331 11 1479999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (807)
+|++|+|++||+|+++. .|++||||||||+|+||+++||++
T Consensus 272 ~P~~Pdnv~~v~~~~g~---------------------------------------~id~~~IGSCTngr~eDl~~aA~i 312 (418)
T PRK00402 272 APHLPDNVKPVSEVEGT---------------------------------------KVDQVFIGSCTNGRLEDLRIAAEI 312 (418)
T ss_pred cCCCccceeEchhhCCc---------------------------------------eeeEEEEecCCCCChHHHHHHHHH
Confidence 99999999999998631 367999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEe
Q 003617 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (807)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V 535 (807)
| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+||||+|+|++...+. +|++ +|
T Consensus 313 l------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~~~-------~ge~---~v 376 (418)
T PRK00402 313 L------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVSTPTCGPCLGGHMGVLA-------PGEV---CL 376 (418)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998654332 3565 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 377 sT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~i 411 (418)
T PRK00402 377 STTNRNFKGRMGSPESEVYLASPAVAAASAVTGKI 411 (418)
T ss_pred EecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCee
Confidence 99999999999988889999999999999999999
No 24
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=6.8e-116 Score=966.65 Aligned_cols=405 Identities=27% Similarity=0.408 Sum_probs=364.9
Q ss_pred HHHHHHHHhhhcCCC--CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCccc
Q 003617 61 SKDVEKIIDWETTSP--KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVAR 138 (807)
Q Consensus 61 ~~~ie~il~~~~~~~--~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~ 138 (807)
|+++||||+.+.+.. +++.+.+++|++++||.|+++++..|. ++| .++++|+. +.+++||++|+....
T Consensus 1 ~Tl~eKIl~~h~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~~~-------~~g--~~v~~p~~-~~~~~DH~~p~~~~~ 70 (412)
T TIGR02086 1 MTLAEKILSEKVGRPVEAGEIVEVEVDLAMAHDGTGPLAIETLR-------ELG--ARVEDPEK-IVIFFDHVVPPPTVE 70 (412)
T ss_pred CCHHHHHHHHhcCCccCCCCEEEEECCEEEEecccHHHHHHHHH-------HcC--CcccCCCC-EEEECCCCCCCCCHH
Confidence 478999999986642 466789999999999999999987764 346 46788885 778999999998643
Q ss_pred chHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCc
Q 003617 139 SENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDG 217 (807)
Q Consensus 139 ~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~Ga 217 (807)
.+..++..++|.+ +| |+++++||+|||||+++| .|++.| +++|||||||||+||
T Consensus 71 --~a~~~~~~r~fa~-------------~~-gi~~~~~g~GI~H~v~~E---------~G~~~PG~~iig~DSHT~t~Ga 125 (412)
T TIGR02086 71 --AANRQKEIREFAK-------------EH-GIPVFDVGEGICHQVLVE---------EGYAGPGMVVVGGDSHTCTSGA 125 (412)
T ss_pred --HHHHHHHHHHHHH-------------Hc-CCcEECCCCCeEeEEhhh---------cCccCCCcEEEecCCCccccch
Confidence 3334444555544 22 477789999999999999 889999 579999999999999
Q ss_pred ccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhh
Q 003617 218 LGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADR 297 (807)
Q Consensus 218 lG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dR 297 (807)
||+||||||++|++++|++|++|+++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||+++|
T Consensus 126 lGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R 205 (412)
T TIGR02086 126 VGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFGLPIEAMSMDER 205 (412)
T ss_pred hhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHHHHHHHHHhCcCccceeEEEEECccccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCC
Q 003617 298 ATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGP 377 (807)
Q Consensus 298 aTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP 377 (807)
||||||++|+||++||||+|++|++||+.++|.+.. .+ .+|++|.|+++++||||+|||+||+|
T Consensus 206 ~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~~------------~~----~~D~~a~Y~~~i~iDls~leP~va~P 269 (412)
T TIGR02086 206 MTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFR------------IL----RPDPGAKYDDEIEIDLSDLEPLVAVP 269 (412)
T ss_pred hhhhhcccccCceeeEecCCHHHHHHHHhcCCcccc------------cc----cCCCCCCEEEEEEEEccceeEEecCC
Confidence 999999999999999999999999999999886421 12 47999999999999999999999999
Q ss_pred CCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHH
Q 003617 378 KRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVA 457 (807)
Q Consensus 378 ~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa 457 (807)
++|+|++|++++.+. +|++||||||||+|++||++||++|
T Consensus 270 ~~P~nv~~v~~~~~~---------------------------------------~id~~~IGSCTngr~~Dl~~aA~vL- 309 (412)
T TIGR02086 270 HSVDNVRPVSDVEGT---------------------------------------EIDQVFIGSCTNGRIEDLRIAAEIL- 309 (412)
T ss_pred CChHhcccchhhccc---------------------------------------ceeEEEEeccCCCChHHHHHHHHHH-
Confidence 999999999998731 3679999999999999999999999
Q ss_pred HHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeec
Q 003617 458 KKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLS 537 (807)
Q Consensus 458 k~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS 537 (807)
||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++..+. .+|++ +|||
T Consensus 310 -----kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~pgCg~C~G~~~g~~-------~~ge~---~vsT 374 (412)
T TIGR02086 310 -----EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVL-------GDGEV---CVST 374 (412)
T ss_pred -----cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCCcC-------CCCCE---EEEe
Confidence 99999999999999999999999999999999999999999999999999985543 34665 7899
Q ss_pred cCCCCCCCCCCCCCceEecCHHHHHHHHHhCccc
Q 003617 538 GNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (807)
Q Consensus 538 ~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 571 (807)
+||||+||||+..+.+|||||++|||+||+|+|+
T Consensus 375 ~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 375 TNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred cCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999999888899999999999999999993
No 25
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=8.4e-116 Score=957.56 Aligned_cols=379 Identities=36% Similarity=0.561 Sum_probs=348.4
Q ss_pred ceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhc
Q 003617 85 ARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWG 164 (807)
Q Consensus 85 drvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~ 164 (807)
|++|+||.|+++++..|+ ++|.+ ..++|. +.+++||++|+.. .+|.++|.|++|.
T Consensus 1 D~~~~hD~t~p~a~~~~~-------~~g~~-~v~~~~--~~~~~DH~~p~~~---------------~~~a~~~~~lr~~ 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFE-------AMGVD-RVRTEL--SVSYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CceEEEeccHHHHHHHHH-------HcCCC-eeCCCC--eEEEeCCCCCCCC---------------hHHHHHHHHHHHH
Confidence 789999999999987764 45764 345553 7889999999864 2677889999999
Q ss_pred ccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeec
Q 003617 165 SNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (807)
Q Consensus 165 ~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~v 243 (807)
+++| ||++++||+|||||+++|+| +.| +++|||||||||+||||+||||||++|++++|++|++||++
T Consensus 56 a~~~-gi~~~~~g~GI~H~v~~E~~----------~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~v 124 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLERF----------AVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPM 124 (380)
T ss_pred HHHc-CCEEECCCCCeeeeecHhhc----------cCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccC
Confidence 9999 69999999999999999954 456 68999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHH
Q 003617 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (807)
Q Consensus 244 PevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~Y 323 (807)
||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++|
T Consensus 125 Petv~V~l~G~l~~gV~aKDviL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~y 204 (380)
T cd01585 125 PKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREF 204 (380)
T ss_pred CcEEEEEEEccCCCCcCHHHHHHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccC
Q 003617 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGF 403 (807)
Q Consensus 324 L~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~ 403 (807)
|+.+||.+++. .+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+.
T Consensus 205 l~~~gr~~~~~----------~l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g~----------- 258 (380)
T cd01585 205 LAAQGREDDWV----------EL-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAGI----------- 258 (380)
T ss_pred HHhcCCchhcc----------cc-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCCc-----------
Confidence 99999865431 12 47999999999999999999999999999999999998631
Q ss_pred CCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHH
Q 003617 404 KGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVT 483 (807)
Q Consensus 404 ~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~ 483 (807)
+|++||||||||+|+||+++||++| ||+||+|+||++|+|||++|+
T Consensus 259 ----------------------------~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~ 304 (380)
T cd01585 259 ----------------------------KVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVL 304 (380)
T ss_pred ----------------------------eEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHH
Confidence 3789999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 003617 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (807)
Q Consensus 484 ~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (807)
++|+++|++++|+++||.|.+|||++|+|+++.+. ++++ +|||+||||+||||+..+.+|||||++|||
T Consensus 305 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaA 373 (380)
T cd01585 305 EMLARNGALADLLAAGARILESACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAA 373 (380)
T ss_pred HHHHHCCcHHHHHHcCCEEeCCCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHH
Confidence 99999999999999999999999999999976632 3565 789999999999998888999999999999
Q ss_pred HHHhCcc
Q 003617 564 YALAGSV 570 (807)
Q Consensus 564 ~AlaG~I 570 (807)
|||+|+|
T Consensus 374 sAi~G~i 380 (380)
T cd01585 374 AALTGVI 380 (380)
T ss_pred HHhCccC
Confidence 9999986
No 26
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=8.9e-115 Score=957.26 Aligned_cols=409 Identities=32% Similarity=0.446 Sum_probs=362.9
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 003617 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (807)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~ 137 (807)
||++||||+.+.+.. +++.|.+++|++|+||.|+++++..|. ++|. +..+||+. +.+++||++|+...
T Consensus 1 ~Tl~eKIl~~h~~~~~v~~G~~v~~~vD~~~~hD~t~p~a~~~f~-------~~g~-~~V~dp~~-v~~~~DH~vpa~~~ 71 (419)
T TIGR02083 1 MTMAEKILAQHAGLESVEPGELILAKLDIVLGNDITTPLAIKAFK-------EYGG-KKVFDPDR-VALVPDHFTPNKDI 71 (419)
T ss_pred CCHHHHHHHHhcCCCCCCCCCEEEEECcEEEEEeccHHHHHHHHH-------HcCC-CcCCCCCC-EEEEeCCCCCCCCH
Confidence 478999999997643 566789999999999999999987764 4565 45778875 78899999999853
Q ss_pred cchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCC-ceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS-GIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~-GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
..+..++..++|.|. +++++ |+++|+ |||||+++| +|++.| +++|||||||||+
T Consensus 72 --~~a~~~~~~r~fa~~--------~gi~~-----f~d~g~~GI~H~v~~E---------~g~~~PG~~ivg~DSHT~t~ 127 (419)
T TIGR02083 72 --KSAEQCKMMREFARE--------QGIEK-----FFEIGNMGIEHALLPE---------EGIVKPGDLIIGADSHTCTY 127 (419)
T ss_pred --HHHHHHHHHHHHHHH--------cCCcc-----eecCCCcceeeeeccc---------cCccCCCeEEEecCCCcccc
Confidence 444566667777763 33322 577885 999999999 899999 5799999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||+|||+|+|+++||++
T Consensus 128 Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKDviL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~ 207 (419)
T TIGR02083 128 GALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMD 207 (419)
T ss_pred CccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHHHHHHHHHHhCcCCccceEEEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+||++|+||+|++|++||+.+++++ ++ .+ .+|++|.|+++++||||+|||+||
T Consensus 208 ~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~----------~~----~~D~dA~Y~~~~~iDls~leP~va 271 (419)
T TIGR02083 208 DRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK----------IY----KADEDAKYVRVIEIDLSELEPQVA 271 (419)
T ss_pred HHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh----------cc----cCCCCCCEEEEEEEEccccceeec
Confidence 999999999999999999999999999999766442 11 12 479999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (807)
+|++|+|++||+|++.. | -+|++||||||||+|++||++||++
T Consensus 272 ~P~~pdnv~~v~e~~~~------------g-------------------------~~id~v~IGSCTngr~eDl~~AA~i 314 (419)
T TIGR02083 272 FPHLPENTKDISEAGKE------------E-------------------------IKIDQVVIGSCTNGRLEDLRLAAEI 314 (419)
T ss_pred CCCCcccCcChhhcccc------------c-------------------------CccCeEEEEcCCCCChHHHHHHHHH
Confidence 99999999999998620 1 1467999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEe
Q 003617 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (807)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V 535 (807)
| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.+||||+|+|++..... ++|+ +|
T Consensus 315 L------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~~pgCg~C~G~~~g~l~-------~ge~---~v 378 (419)
T TIGR02083 315 L------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILA-------EGER---AI 378 (419)
T ss_pred H------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCcCCCcCC-------CCCE---EE
Confidence 9 999999999999999999999999999999999999999999999999998844332 3564 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccc
Q 003617 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVN 571 (807)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~ 571 (807)
||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 379 sT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 379 STTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred EecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 999999999999766789999999999999999993
No 27
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-112 Score=913.16 Aligned_cols=409 Identities=30% Similarity=0.450 Sum_probs=361.3
Q ss_pred HHHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcc
Q 003617 61 SKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVA 137 (807)
Q Consensus 61 ~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~ 137 (807)
+|+.|||++.+.... .++.+.+++|++|.||.|+|.++.-| +++|. +.++|++ +.+++||++|+++.
T Consensus 3 ~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~l-------r~~g~--kV~~p~k-~~~~~DH~vPt~~~ 72 (423)
T COG0065 3 KTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGL-------REAGR--KVRDPEK-TVATFDHNVPTPDI 72 (423)
T ss_pred ccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHH-------HHhCC--cccCccc-eEEEecCCCCCccH
Confidence 789999999987643 23457789999999999999997554 34565 5778875 77899999999865
Q ss_pred cchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCC-CceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 138 RSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPG-SGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 138 ~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG-~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
.. +.++ +++.+|.++| ++ +.|++.| +||||||.+| +|++.| +++||+||||||+
T Consensus 73 ~~--a~~~---~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v~pE---------~G~~~PG~~Iv~gDSHT~T~ 128 (423)
T COG0065 73 KA--AEQQ---KELRENAKEF-----GI-----VNFYDVGDQGIVHQVGPE---------QGLTLPGMTIVGGDSHTCTH 128 (423)
T ss_pred HH--HHHH---HHHHHHHHHh-----CC-----eeeecCCCCcEEEEEecc---------ccccCCCcEEEecccCcccc
Confidence 43 3334 4444544432 33 4457778 9999999999 999999 5899999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
||||+||+|+|++|+|.+|++|++|+++||+++|+++|+|++|||||||||+|++.++.+|++|+++||+|+.+++|||+
T Consensus 129 GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme 208 (423)
T COG0065 129 GAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSME 208 (423)
T ss_pred hhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeecc
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVS 375 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vA 375 (807)
+|||||||++|+||++|+|+||++|++||+.. .++...|+.. .+|+||.|+++++||+|+|||+||
T Consensus 209 ~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~-------------~~a~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va 274 (423)
T COG0065 209 GRMTLCNMAIEAGAKAGIIAPDETTFEYLKEW-------------DGAVAYWKTL-KSDEDAVYDKVVELDASDLEPQVA 274 (423)
T ss_pred hhhhhhhhhhhhcccceeeCCcHhHHHHHHHH-------------hcccccccee-cCCCCCceeEEEEEEcccCCceee
Confidence 99999999999999999999999999999932 2223345543 589999999999999999999999
Q ss_pred CCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHH
Q 003617 376 GPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAAL 455 (807)
Q Consensus 376 gP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~l 455 (807)
||++|+|++||+|+.++ + -+|+++|||||||+|++||++||++
T Consensus 275 ~p~~p~nv~~v~e~~~~--------------~-----------------------i~iDqVFIGSCTNgRieDLr~AA~I 317 (423)
T COG0065 275 WPTNPDNVVPVSEVEPD--------------P-----------------------IKIDQVFIGSCTNGRIEDLRAAAEI 317 (423)
T ss_pred CCCCcccceecccccCC--------------c-----------------------eeeceEEEeccCCccHHHHHHHHHH
Confidence 99999999999998742 0 1478999999999999999999999
Q ss_pred HHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEe
Q 003617 456 VAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAV 535 (807)
Q Consensus 456 Lak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V 535 (807)
| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|..|||+||+|++.+.+. +||+ |+
T Consensus 318 l------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~-------~gE~---c~ 381 (423)
T COG0065 318 L------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLG-------PGER---CA 381 (423)
T ss_pred h------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCcCC-------CCCE---Ee
Confidence 9 899999999999999999999999999999999999999999999999999966544 4665 78
Q ss_pred eccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 536 LSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 536 sS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
||+||||+||||+..+.+||+||+++||+||+|+|
T Consensus 382 STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i 416 (423)
T COG0065 382 STSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEI 416 (423)
T ss_pred eccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEe
Confidence 99999999999977788999999999999999999
No 28
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=2.9e-107 Score=901.28 Aligned_cols=403 Identities=24% Similarity=0.345 Sum_probs=350.9
Q ss_pred HHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccc
Q 003617 63 DVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARS 139 (807)
Q Consensus 63 ~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~ 139 (807)
++||||+.+.+.. +++.|.+++|++++||.||++++..|.. +|. +++||+. +.+++||++|+.+..
T Consensus 1 ~~EKIl~~~~~~~~v~~G~~v~~~vD~~~~~D~t~p~~~~~f~~-------~~~--~v~d~~~-~v~~~DH~~p~~~~~- 69 (436)
T cd01581 1 LAQKIVGRACGVKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKE-------LAC--LGFSADL-VMQSFCHTAAYPKPV- 69 (436)
T ss_pred ChHHHHHHhcCCCCCCCCCEEEEEcCEEEeeccchHHHHHHHHH-------cCC--cccCCcc-EEEEcCCCCCCCCHH-
Confidence 3799999986643 4667999999999999999999888753 454 4678874 778999999988543
Q ss_pred hHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCCcccCcc
Q 003617 140 ENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGL 218 (807)
Q Consensus 140 ~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~Gal 218 (807)
.+..++..++|.+++ +++||+||+||||||+.| +++|+ ++|||||||||+||
T Consensus 70 -~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~~e-----------~~~PG~~ivGtDSHT~t~ga- 122 (436)
T cd01581 70 -DVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIG- 122 (436)
T ss_pred -HHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeeehh-----------hccCCceEEeeccccCCCCc-
Confidence 444677777777742 367899999999999888 35786 57999999999986
Q ss_pred cceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHH----H--------HHhcCcccEEEEEec
Q 003617 219 GVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ----M--------LRKHGVVGMFVEFYG 286 (807)
Q Consensus 219 G~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~----~--------L~~~G~~gk~VEf~G 286 (807)
||||+|++|++.+|++|++||++||+|+|+|+|+|++|||||||||+|+. . ++.+|++||+|||.
T Consensus 123 --~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDviL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~- 199 (436)
T cd01581 123 --ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE- 199 (436)
T ss_pred --eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHHHHHHHHHHHhcccccccccCCcccccceEEEEC-
Confidence 89999999999999999999999999999999999999999999998654 3 33345689999995
Q ss_pred CccccCChhhhhhhhccCcccCceeeeecCChHH-HHHHhhc----------CCCc-----chHHHHHHHHHHhhccccC
Q 003617 287 EGMSELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT----------GRSD-----DTVSMIESYLRANKMFVDY 350 (807)
Q Consensus 287 ~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T-~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l~~~~ 350 (807)
|+++||+++|||||||++|+|||+|+||+|++| ++||+.+ ||++ .+.++++.|.+++.+|
T Consensus 200 -Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (436)
T cd01581 200 -GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLMKIMIANGYDDARTLLRRIIAMEEWLANPPLL--- 275 (436)
T ss_pred -CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCccccccccccCcccccchhHHHHHHHHHHhhcccc---
Confidence 599999999999999999999999999999988 8999997 5542 3345778888887777
Q ss_pred CCCCCCCcccEEEEEEcCCc-eeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccC
Q 003617 351 SEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLR 429 (807)
Q Consensus 351 ~~~D~~a~Y~~vieiDLs~v-eP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~ 429 (807)
.+|++|.|+++++||||+| ||+||+|++|+|++||+|+.+.
T Consensus 276 -~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g~------------------------------------- 317 (436)
T cd01581 276 -EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK------------------------------------- 317 (436)
T ss_pred -cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcCC-------------------------------------
Confidence 4799999999999999999 9999999999999999998631
Q ss_pred CCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccc
Q 003617 430 HGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTT 509 (807)
Q Consensus 430 ~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~ 509 (807)
+|+++||||||| |++|++.||.+| ||+|+++ ||++|+|||++|+++|+++|++++|+++||.|.+||||+
T Consensus 318 --~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~~-vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~ 387 (436)
T cd01581 318 --KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSL 387 (436)
T ss_pred --ccceEEEecCCC-CHHHHHHHHHHH------cCCCCCC-CCEEEECCCHHHHHHHHHcChHHHHHHcCCEECCCcccc
Confidence 356999999999 999999999999 9999754 999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 510 CIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 510 CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
|+|+++.+ .+||+ +|||+||||+||||+ ...+|||||++||||||+|+|
T Consensus 388 C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yLaSP~~vAAsAi~G~i 436 (436)
T cd01581 388 CMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYLGSAELAAVCALLGRI 436 (436)
T ss_pred ccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCccC
Confidence 99985543 35776 789999999999999 678999999999999999986
No 29
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.8e-106 Score=877.65 Aligned_cols=361 Identities=30% Similarity=0.478 Sum_probs=318.5
Q ss_pred eeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcc
Q 003617 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (807)
Q Consensus 86 rvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (807)
.+++||.|+++++. |. ++|. ++.++|+. +.+++||++|+.... .+..++..++|.|
T Consensus 1 ~~~~hd~t~p~~~~-~~-------~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak------------ 56 (363)
T cd01582 1 HCMTHDNSWPVALK-FM-------SIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAK------------ 56 (363)
T ss_pred CeeEEeCcHHHHHH-HH-------HcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH------------
Confidence 37999999998765 53 3565 46788874 778999999988532 2333444444444
Q ss_pred cccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecC
Q 003617 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (807)
Q Consensus 166 ~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vP 244 (807)
+| +++|++||+|||||+++| +|+++|+ ++|||||||||+||||+||||||++|++++|+++++|+++|
T Consensus 57 -~~-gi~~~~~g~GI~Hqv~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vP 125 (363)
T cd01582 57 -KH-GIDFYPAGRGIGHQIMIE---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIP 125 (363)
T ss_pred -Hh-CCeEECCCCCEEEEeccc---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCC
Confidence 34 578999999999999999 8899997 57999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHH
Q 003617 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (807)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL 324 (807)
|+|+|+|+|+|++||+||||+|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||++|||+|
T Consensus 126 e~i~v~l~G~l~~gV~aKDviL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D------- 198 (363)
T cd01582 126 PVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD------- 198 (363)
T ss_pred CEEEEEEecccCCCCCHHHHHHHHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCC
Q 003617 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (807)
Q Consensus 325 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~ 404 (807)
+++++||||+|||+||+|++|+|++|++++...
T Consensus 199 -----------------------------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------ 231 (363)
T cd01582 199 -----------------------------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------ 231 (363)
T ss_pred -----------------------------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------
Confidence 457999999999999999999999999997521
Q ss_pred CcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHH
Q 003617 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELG-LEVKPWIKTSLAPGSGVVT 483 (807)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G-~kv~p~Vk~~v~PgS~~V~ 483 (807)
+ -+|++||||||||+|++||+.||++|.++..++| ++|+||||++|+|||++|+
T Consensus 232 ~-------------------------~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~ 286 (363)
T cd01582 232 N-------------------------IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQ 286 (363)
T ss_pred C-------------------------ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHH
Confidence 1 1467999999999999999999999942222222 3399999999999999999
Q ss_pred HHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHH
Q 003617 484 KYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVA 563 (807)
Q Consensus 484 ~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA 563 (807)
++|+++||+++|.++||.|.+|||++|+|+++++.+ ++|+ +|||+||||+||||+..+.+|||||++|||
T Consensus 287 ~~a~~~Gl~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaA 356 (363)
T cd01582 287 AAAEKNGDWQTLLEAGATPLPAGCGPCIGLGQGLLE-------PGEV---GISATNRNFKGRMGSTEALAYLASPAVVAA 356 (363)
T ss_pred HHHHHcCcHHHHHHCCCEEECCCCeeccCCCCCCCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHH
Confidence 999999999999999999999999999999988653 3565 689999999999998888999999999999
Q ss_pred HHHhCcc
Q 003617 564 YALAGSV 570 (807)
Q Consensus 564 ~AlaG~I 570 (807)
|||+|+|
T Consensus 357 sAi~G~i 363 (363)
T cd01582 357 SAISGKI 363 (363)
T ss_pred HHhCccC
Confidence 9999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=9.1e-102 Score=855.08 Aligned_cols=388 Identities=38% Similarity=0.604 Sum_probs=352.4
Q ss_pred eeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCcccchHHHHhhhHHHHHHhhhhhhhhhhcc
Q 003617 86 RVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGS 165 (807)
Q Consensus 86 rvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~ 165 (807)
||++||+||++++.+|+.| |.+.+.+||. ++.+++||++|+++ .+|.++|+|++|.+
T Consensus 1 ~v~~hD~tgp~a~~~~~~~-------~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEIL-------AALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEecchHHHHHHHHHc-------CCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHH
Confidence 7999999999999887543 5432355664 68999999999863 26777888999988
Q ss_pred cccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCcccCcccceeeccCHHHHHHHHcCCceEeecC
Q 003617 166 NAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLP 244 (807)
Q Consensus 166 ~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~GalG~lg~GVGg~ea~aam~g~~~~~~vP 244 (807)
++|+ +++++||+|||||+++|++ ..| ++++||||||||+||||+++||+|++|++++|+||++|+++|
T Consensus 58 ~~~g-i~~~~~g~Gi~H~~~~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP 126 (389)
T cd01351 58 ALQG-IAFYRPGVGIIHQIMVENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKP 126 (389)
T ss_pred HHcC-CcEECCCCCeECccccccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCC
Confidence 8885 8999999999999999954 345 689999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChhhhhhhhccCcccCceeeeecCChHHHHHH
Q 003617 245 GVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYL 324 (807)
Q Consensus 245 evvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~T~~YL 324 (807)
++++|+|+|+|++||++|||+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||
T Consensus 127 ~~~~v~l~G~l~~~V~~kDl~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl 206 (389)
T cd01351 127 EVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWL 206 (389)
T ss_pred cEEEEEEecccCCCceeeHHHHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchHHHHHHHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCC
Q 003617 325 KLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFK 404 (807)
Q Consensus 325 ~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~ 404 (807)
+.++|++... .++.|.+. | .+|++|.|+++++||||+|||+||+|++|||++||+++.+
T Consensus 207 ~~~~~~~~~~-~~~~~~~~--l-----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~------------- 265 (389)
T cd01351 207 EATGRPLLKN-LWLAFPEE--L-----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG------------- 265 (389)
T ss_pred HhcCCchhhH-HHHHHHhc--c-----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC-------------
Confidence 9999987543 33333331 2 4799999999999999999999999999999999999763
Q ss_pred CcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH
Q 003617 405 GFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTK 484 (807)
Q Consensus 405 g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~ 484 (807)
.+|++||||||||+|++|++.||.+| ||+||+|+||++|+|||++|++
T Consensus 266 --------------------------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~ 313 (389)
T cd01351 266 --------------------------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYA 313 (389)
T ss_pred --------------------------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHH
Confidence 14789999999999999999999999 9999999999999999999999
Q ss_pred HHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHH
Q 003617 485 YLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAY 564 (807)
Q Consensus 485 ~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~ 564 (807)
+++++|++++|+++||.|..+||++|+|+++++.. ++++ +|+|+||||+||||+..+.+|||||++||||
T Consensus 314 ~a~~~Gl~~~l~~aG~~i~~~gC~~C~G~~~~~~~-------~g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAs 383 (389)
T cd01351 314 TLSREGYYEILVDSGARILPPGCGPCMGNGARLVA-------DGEV---GVSSGNRNFPGRLGTYERHVYLASPELAAAT 383 (389)
T ss_pred HHHHcChHHHHHHCCCEEeCCCCcccCCCCCCcCC-------CCcE---EEEeecCCCccccCCCCCceEECCHHHHHHH
Confidence 99999999999999999999999999999988753 3554 7899999999999998889999999999999
Q ss_pred HHhCcc
Q 003617 565 ALAGSV 570 (807)
Q Consensus 565 AlaG~I 570 (807)
||+|+|
T Consensus 384 Al~G~i 389 (389)
T cd01351 384 AIAGKI 389 (389)
T ss_pred HhcCcC
Confidence 999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=5.3e-99 Score=877.13 Aligned_cols=408 Identities=23% Similarity=0.320 Sum_probs=357.8
Q ss_pred ccHHHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 003617 59 VKSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (807)
Q Consensus 59 ~~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~ 135 (807)
.++|++|||++.+.+.. ++..|..++|.|++||.||++++..| +++|. ..++|+. +.+++||.+|..
T Consensus 369 ~g~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~lg~--~~~~~d~-v~~~~dH~~p~~ 438 (835)
T PRK09238 369 KGFTLAQKMVGRACGVPGVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC--LGFSADL-VMQSFCHTAAYP 438 (835)
T ss_pred CcccHHHHHHHHhcCCCCCCCCCEEEEECCEEEeeccchHHHHHHH-------HHcCC--cccCCCc-EEEEccCCCCCC
Confidence 46899999999886632 56789999999999999999997654 56675 4667764 678999999987
Q ss_pred cccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccCe-EEecCCCCcc
Q 003617 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (807)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (807)
.. .++..++..++|.+++ ++.+++||+|||||++. |+++||+ ++||||||||
T Consensus 439 ~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~vl~-----------~~~~Pg~vivG~DSHT~t 491 (835)
T PRK09238 439 KP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSWLN-----------RMLLPDTVGTGGDSHTRF 491 (835)
T ss_pred CH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeeccc-----------ccccCCeEEEecccccCC
Confidence 43 4555677777777742 34568899999999953 5789986 5999999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHH------------HhcCcccEEE
Q 003617 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQML------------RKHGVVGMFV 282 (807)
Q Consensus 215 ~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L------------~~~G~~gk~V 282 (807)
+|| ||||+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+ +++|++||+|
T Consensus 492 ~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKDviL~I~~~~i~~g~ltv~~~~g~~~~~gr~l 568 (835)
T PRK09238 492 PIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRIL 568 (835)
T ss_pred CCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhHHHHHHHHHHHhcccccccccCCccceeeeEE
Confidence 997 7899999999999999999999999999999999999999999999994333 3345789999
Q ss_pred EEecCccccCChhhhhhhhccCcccCceeeeec-CChHHHHHHhhc----------CCCc-----chHHHHHHHHHHhhc
Q 003617 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (807)
Q Consensus 283 Ef~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp-~De~T~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l 346 (807)
||. |+++||+++|+|||||++|+||++|+|| +|+.|++||+.+ ||++ .+++.+++|++.+.+
T Consensus 569 Ef~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~l 646 (835)
T PRK09238 569 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEEWLANPEL 646 (835)
T ss_pred EEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccccccccccCcccccchhHHHHHHHHHHhhccc
Confidence 995 6999999999999999999999999999 788889999986 6642 346778899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCc
Q 003617 347 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 425 (807)
Q Consensus 347 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 425 (807)
| .+|++|+|+++++||||+| ||+||+|++|||++||+|+.+.
T Consensus 647 l----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~--------------------------------- 689 (835)
T PRK09238 647 L----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT--------------------------------- 689 (835)
T ss_pred c----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC---------------------------------
Confidence 8 4799999999999999999 9999999999999999998731
Q ss_pred cccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003617 426 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505 (807)
Q Consensus 426 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~ 505 (807)
.|++||||||| |+++|++.||.+| ||+++++.||++|+|||++|+.+|+++|++++|.++||.|..|
T Consensus 690 ------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~p 756 (835)
T PRK09238 690 ------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMP 756 (835)
T ss_pred ------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 36689999999 9999999999999 9999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 506 GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
|||+|+||++.+ .+|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|
T Consensus 757 GCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I 809 (835)
T PRK09238 757 GCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVYLGSAELAAVCALLGRI 809 (835)
T ss_pred cchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeEeCCHHHHHHHHhCCcc
Confidence 999999996554 35675 789999999999997 567999999999999999999
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=7.1e-98 Score=865.16 Aligned_cols=407 Identities=23% Similarity=0.328 Sum_probs=355.8
Q ss_pred ccHHHHHHHHhhhcCC---CCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcC
Q 003617 59 VKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVD 135 (807)
Q Consensus 59 ~~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~ 135 (807)
.++|++|||++.+.+. .++..|..++|.|++||.||++++..| +++|. ..++|+. +.+++||.+|..
T Consensus 370 mg~TlaeKIl~~a~G~~~v~pG~~v~~~vd~v~sqD~Tgpmt~~~~-------~~l~~--~vfdpd~-v~~~~DH~~p~~ 439 (844)
T TIGR00117 370 KGFTLAQKMVGRACGVKGIRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KELAC--LGFSADL-VLQSFCHTAAYP 439 (844)
T ss_pred CchhHHHHHHHHhhCCCCCCCCCEEEEECcEEeeeccccHHHHHHH-------HHhCC--ceECCCc-EEEEeCCCCCCC
Confidence 4689999999998663 256789999999999999999997665 44454 4667764 678999999877
Q ss_pred cccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccCe-EEecCCCCcc
Q 003617 136 VARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTM 214 (807)
Q Consensus 136 ~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pdt-vvGtDSHT~~ 214 (807)
. ..++..++..++|.+++ ++.+++||+|||||++.| +++||+ ++||||||||
T Consensus 440 ~--~~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqvl~e-----------~~~PG~vivG~DSHT~t 492 (844)
T TIGR00117 440 K--PVDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTRF 492 (844)
T ss_pred C--HHHHHHHHHHHHHHHHc--------------CCeEECCCCceecccchh-----------hccCCeeEEeccccccc
Confidence 4 34556777788887752 345788999999999776 458875 6999999999
Q ss_pred cCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHh------------cCcccEEE
Q 003617 215 IDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRK------------HGVVGMFV 282 (807)
Q Consensus 215 ~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~------------~G~~gk~V 282 (807)
+ +| ||+|+|++|++.+|++|.+||++||+|+|+|+|+|++|||+|||||+|+..+.+ +|.+|++|
T Consensus 493 ~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKDliL~I~~~~i~~G~ltv~k~g~~ng~~gk~l 569 (844)
T TIGR00117 493 P--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRIL 569 (844)
T ss_pred c--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhhHHHHHHHHHHhcCeeecccccccccccceEE
Confidence 7 67 999999999999999999999999999999999999999999999999544432 45689999
Q ss_pred EEecCccccCChhhhhhhhccCcccCceeeeecCChH-HHHHHhhc----------CCCc-----chHHHHHHHHHHhhc
Q 003617 283 EFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRANKM 346 (807)
Q Consensus 283 Ef~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~-T~~YL~~t----------gr~~-----~~~~~~~~y~~~~~l 346 (807)
||. |+++||+++|+|||||++|+||++|+||+|++ |++||+.+ ||.+ .+++.+++|++.+.+
T Consensus 570 Ef~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~l 647 (844)
T TIGR00117 570 EIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPEL 647 (844)
T ss_pred EEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccccccccccCCcchhhhhHHHHHHHHHHhhccc
Confidence 995 69999999999999999999999999999965 89999995 6654 356778899988888
Q ss_pred cccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCc
Q 003617 347 FVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTP 425 (807)
Q Consensus 347 ~~~~~~~D~~a~Y~~vieiDLs~v-eP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 425 (807)
| .+|++|+|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 648 l----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~--------------------------------- 690 (844)
T TIGR00117 648 L----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD--------------------------------- 690 (844)
T ss_pred c----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc---------------------------------
Confidence 7 4799999999999999999 9999999999999999998631
Q ss_pred cccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003617 426 AQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGY 505 (807)
Q Consensus 426 ~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~ 505 (807)
.|++||||||| ++++|++.||.+| ||+++++ ||++|+|||++|+++|+++|++++|.++||+|..|
T Consensus 691 ------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~p 756 (844)
T TIGR00117 691 ------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLWVAPPTRMDEQQLTEEGYYSIFGAAGARTEIP 756 (844)
T ss_pred ------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEEEECCCHHHHHHHHHcCcHHHHHHcCCEECCC
Confidence 35689999999 7999999999999 9999988 99999999999999999999999999999999999
Q ss_pred CcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 506 GCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 506 GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
|||+|+||++.+. +|++ +|||+||||+||||+ .+.+|||||++|||+||+|+|
T Consensus 757 GCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~-~a~vYLaSP~~aAAsAi~G~I 809 (844)
T TIGR00117 757 GCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGT-GANVYLGSAELAAVCALLGKI 809 (844)
T ss_pred ccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCC-CccEEeCCHHHHHHHHhCccc
Confidence 9999999966643 4554 688999999999998 457999999999999999999
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=2e-95 Score=842.44 Aligned_cols=408 Identities=22% Similarity=0.316 Sum_probs=352.9
Q ss_pred ccHHHHHHHHhhhcCC----CCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCc
Q 003617 59 VKSKDVEKIIDWETTS----PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQV 134 (807)
Q Consensus 59 ~~~~~ie~il~~~~~~----~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~ 134 (807)
.++|++|||++.+.+. .++..|..++|.|++||.||++++..|. ++|.. .++|+. |.+++||.+|+
T Consensus 442 mG~TlaEKIl~~a~G~~~~V~pGe~v~~~vD~v~sqD~TGPmt~~efk-------el~~~--~~dpdk-v~~~fDH~ap~ 511 (938)
T PLN00094 442 KGFTLAQKMVGKACGVDEGILPGTYCEPRMTTVGSQDTTGPMTRDELK-------DLACL--GFSADL-VMQSFCHTAAY 511 (938)
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCEEEEECcEEeeeccccHHHHHHHH-------Hhccc--ccCccc-EEEEccCCCCC
Confidence 4689999999998653 2567899999999999999999976654 43331 334442 67899999887
Q ss_pred CcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccC-eEEecCCCCc
Q 003617 135 DVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDSHTT 213 (807)
Q Consensus 135 ~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pd-tvvGtDSHT~ 213 (807)
... .++..++..++|.+++ |+.+++||+|||||++.| ++.|| +++|+|||||
T Consensus 512 p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~HqvL~e-----------~~lPG~vivGgDSHT~ 564 (938)
T PLN00094 512 PKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSWLNR-----------MLLPDTVGTGGDSHTR 564 (938)
T ss_pred CCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceecccccc-----------cccCCeEEEeecCCCC
Confidence 754 5556667778777742 355789999999998755 66786 5899999999
Q ss_pred ccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHH------HHHHh------cCcccEE
Q 003617 214 MIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVT------QMLRK------HGVVGMF 281 (807)
Q Consensus 214 ~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~------~~L~~------~G~~gk~ 281 (807)
+..|+ ++|.|++|++.+|++|++||++||+|+|+|+|+|++|||+|||||+|+ +.|++ .+.+||+
T Consensus 565 fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKDlIL~Ii~~~i~~G~Ltv~k~gk~~~f~Gki 641 (938)
T PLN00094 565 FPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRDLVHAIPYTAIQDGLLTVEKKGKKNVFSGRI 641 (938)
T ss_pred Ccccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhHHHHHHHHHhhhccccchhhcCccceEeeEE
Confidence 88775 458899999999999999999999999999999999999999999996 44443 3458999
Q ss_pred EEEecCccccCChhhhhhhhccCcccCceeeeecCCh-HHHHHHhh----------cCCC-----cchHHHHHHHHHHhh
Q 003617 282 VEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH-VTLQYLKL----------TGRS-----DDTVSMIESYLRANK 345 (807)
Q Consensus 282 VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De-~T~~YL~~----------tgr~-----~~~~~~~~~y~~~~~ 345 (807)
||| +|+++||+++|+|||||++|+||++|+||+|+ .|++||+. +|+. +.+++.+|+|++...
T Consensus 642 lEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ 719 (938)
T PLN00094 642 LEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVMLKWMIAEGYGDRRTLERRIARMQQWLADPE 719 (938)
T ss_pred EEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccchhhhhccCCCchhhHHHHHHHHHHHHhhcc
Confidence 999 77999999999999999999999999999995 68999986 4543 234677899998888
Q ss_pred ccccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCC
Q 003617 346 MFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGT 424 (807)
Q Consensus 346 l~~~~~~~D~~a~Y~~vieiDLs~v-eP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 424 (807)
+| .+|++|+|+++||||||+| ||+||+|++|||++||+|+.+.
T Consensus 720 ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g~-------------------------------- 763 (938)
T PLN00094 720 LL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTGD-------------------------------- 763 (938)
T ss_pred cc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcCC--------------------------------
Confidence 87 5799999999999999999 9999999999999999998631
Q ss_pred ccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 003617 425 PAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVG 504 (807)
Q Consensus 425 ~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~ 504 (807)
.|++||||||| ++++|++.||.+| +|+++++.||++|+|||++|+.+|+++|++++|.++||.|..
T Consensus 764 -------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~ 829 (938)
T PLN00094 764 -------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLWVAPPTKMDEAQLKAEGYYSTFGTVGARTEM 829 (938)
T ss_pred -------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEEEeCCCHHHHHHHHHcCcHHHHHhCCCEEcC
Confidence 36699999999 7999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcc
Q 003617 505 YGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSV 570 (807)
Q Consensus 505 ~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I 570 (807)
||||+|+||++.+. +|++ +|||+||||+||||+ .+.+||+||++|||+||+|+|
T Consensus 830 PGCg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VYLaSP~~AAASAi~G~I 883 (938)
T PLN00094 830 PGCSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVYLASAELAAVAAILGRL 883 (938)
T ss_pred CccccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEEecCHHHHHHHHhCCcc
Confidence 99999999976652 4665 789999999999998 568999999999999999999
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.5e-57 Score=443.72 Aligned_cols=134 Identities=69% Similarity=1.052 Sum_probs=132.0
Q ss_pred ecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCc
Q 003617 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (807)
Q Consensus 674 ~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~ 753 (807)
+|||+||||||||||+|+++||||+||.++||+++|||||||||||||||+||||+|+|++|+|+++.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 754 ~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
+++|||+|++||++++|||||||+|||||||||||||++++|||+||||+||++
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFar 134 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFER 134 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHH
Confidence 999999999999999999999999999999999999999999999999999974
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.3e-47 Score=422.98 Aligned_cols=413 Identities=24% Similarity=0.369 Sum_probs=327.0
Q ss_pred cHHHHHHHHhhhcCC---CCceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEE---ecCCCC
Q 003617 60 KSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLV---IDHSVQ 133 (807)
Q Consensus 60 ~~~~ie~il~~~~~~---~~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lv---iDH~v~ 133 (807)
+-+.++|+..+.-+. .++.++..+..-|-.||.||+|.-..|..| +-+|++. |++ +.|..
T Consensus 372 G~TlaqKmvgrAcGv~girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfsa---------D~vmQSfCHTA- 437 (852)
T COG1049 372 GFTLAQKMVGRACGVPGIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFSA---------DLVMQSFCHTA- 437 (852)
T ss_pred cccHHHHHhhhccCCccccCCCcccceeeeeccccCCCCccHHHHHHH----Hhhcccc---------hhhhhhccccc-
Confidence 357889999887543 356678889999999999999984444322 2346542 333 23431
Q ss_pred cCcccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCccccCeE-EecCCCC
Q 003617 134 VDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHT 212 (807)
Q Consensus 134 ~~~~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~Pdtv-vGtDSHT 212 (807)
.+....|-..+.....|-.| +.++. ..||.||||.+. +.++.|||+ .|+||||
T Consensus 438 -aypkpvdv~th~~Lp~Fi~~-------------rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHT 491 (852)
T COG1049 438 -AYPKPVDVKTHHTLPDFIMN-------------RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHT 491 (852)
T ss_pred -ccCCccchhccccchHHHhh-------------cCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccc
Confidence 11122222222233344443 23343 358899999985 558899985 8999999
Q ss_pred cccCcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHH------HHHh-----cC-cccE
Q 003617 213 TMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQ------MLRK-----HG-VVGM 280 (807)
Q Consensus 213 ~~~GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~------~L~~-----~G-~~gk 280 (807)
.+.=|+ +|+.|+-=++.+.+++.+.|.+||+|.|+++|+++||+|-+|||..|-- .|.+ ++ ..|+
T Consensus 492 RfpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGR 568 (852)
T COG1049 492 RFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGR 568 (852)
T ss_pred cccccc---eecCCCchhhhhHhcCcccCCCCceEEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecce
Confidence 998654 5778888899999999999999999999999999999999999987752 2331 12 4699
Q ss_pred EEEEecCccccCChhhhhhhhccCcccCceeeeecCChH-HHHHHhhc----------CCCc-----chHHHHHHHHHHh
Q 003617 281 FVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT----------GRSD-----DTVSMIESYLRAN 344 (807)
Q Consensus 281 ~VEf~G~gv~~LS~~dRaTI~NMa~E~GAt~g~fp~De~-T~~YL~~t----------gr~~-----~~~~~~~~y~~~~ 344 (807)
++|. +|+.+|.+++-.+++.-++|..|..+.+-.+++ .++||+.. |..+ ..++.+|+|+.+.
T Consensus 569 IlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p 646 (852)
T COG1049 569 ILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANP 646 (852)
T ss_pred eEEe--ccCcccchhhheeccchhhhhhhccceEecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCc
Confidence 9999 789999999999999999999999888776555 57899763 4443 3467788898888
Q ss_pred hccccCCCCCCCCcccEEEEEEcCCc-eeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCC
Q 003617 345 KMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHG 423 (807)
Q Consensus 345 ~l~~~~~~~D~~a~Y~~vieiDLs~v-eP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 423 (807)
.|. .+|.+|+|..+|||||+.| ||++|+|.+||++..+|++..+
T Consensus 647 ~ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~------------------------------- 691 (852)
T COG1049 647 ELL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGD------------------------------- 691 (852)
T ss_pred ccc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhhHhHHhcCC-------------------------------
Confidence 776 5899999999999999999 8999999999999999997631
Q ss_pred CccccCCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCc--cCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcE
Q 003617 424 TPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLE--VKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFH 501 (807)
Q Consensus 424 ~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~k--v~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~ 501 (807)
.|+-+|||||... .-+++++|++| +|.+ ++ .|++|+|-++...++|.++|++.+|-++|++
T Consensus 692 --------~idevFiGSCMtn-iGh~ra~~klL------~~~~~~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar 754 (852)
T COG1049 692 --------KIDEVFIGSCMTN-IGHFRAAGKLL------ENAKGELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGAR 754 (852)
T ss_pred --------ccceeeeehhhcc-chhHHHHHHHH------HhcccCCC--cceEecCCccccHHHHhhcchHHHHhhccce
Confidence 2567999999754 67889999888 5444 45 7899999999999999999999999999999
Q ss_pred EeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCccccCCCCCCccc
Q 003617 502 IVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGV 581 (807)
Q Consensus 502 v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dplg~ 581 (807)
+--|||+.|+||.... ++|.. .+||+.|||++|+|... .+||+|.+++|.+||-|+|
T Consensus 755 ~E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~nRlg~~a-~vyL~Saelaav~aiLGki----------- 811 (852)
T COG1049 755 IEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGKGA-NVYLASAELAAVCAILGKI----------- 811 (852)
T ss_pred ecCCCcccccccHhhh--------ccCCE---EEeeccccCCccccccc-ceeeeccHHHHHHHHHcCC-----------
Confidence 9999999999996543 45665 46899999999999975 5899999999999999998
Q ss_pred CCCCceeecccCCCChhhHHHhhh
Q 003617 582 GKDGKKIFLRDIWPSSEEVAHVVQ 605 (807)
Q Consensus 582 ~~~G~~v~l~diwP~~~ei~~~~~ 605 (807)
|+.+|..+++.
T Consensus 812 -------------Pt~eEY~~~v~ 822 (852)
T COG1049 812 -------------PTVEEYMAYVA 822 (852)
T ss_pred -------------CCHHHHHHHHH
Confidence 99999988876
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=332.12 Aligned_cols=361 Identities=21% Similarity=0.240 Sum_probs=238.2
Q ss_pred HHHHHhhccccCCCCCCCCcccEEEEEEcCCceeeccCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccce
Q 003617 339 SYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAE 418 (807)
Q Consensus 339 ~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~veP~vAgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 418 (807)
+|-++..+|.+. .||+.+.|+.+++|..-++.|.+.|..+||++.|+.--.++..... . +| -.......
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vt-d-------~i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVT-D-------KI--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccc-h-------HH--HHhhhhhc
Confidence 355666778765 5899999999999999999999999999999999976443211100 0 00 00112345
Q ss_pred eecCCCcccc--CCCCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCcHHHH
Q 003617 419 FNFHGTPAQL--RHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIK-TSLAPGSGVVTKYLQNSGLQKYL 495 (807)
Q Consensus 419 ~~~~g~~~~l--~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk-~~v~PgS~~V~~~l~~~Gl~~~l 495 (807)
+.|+|.+... ..-.++-+|||||||.+.+|++.||+++ +|.|+.-.+| .+++|||+.|...++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 6778876433 3346688999999999999999999999 9999987777 78999999999999999999999
Q ss_pred HhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCcccc--C
Q 003617 496 NHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNI--D 573 (807)
Q Consensus 496 ~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~I~~--d 573 (807)
.++||.+...||..|.|+........|.| -+|+|||||||+|.+.++ +|+||.+.+|.++.|+..- +
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~~~~~ 224 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDLGFRE 224 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccccccc
Confidence 99999999999999999985555556654 479999999999999876 9999999999999998641 0
Q ss_pred C-CCCCcccCCCCce-eecccCCCChhhHHHhhhcccCcchhhhccccccC-CCcccccccCCCCCccccCC-CCc--ee
Q 003617 574 F-ETEPVGVGKDGKK-IFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITK-GNPMWNQLSVPSGTLYAWDP-KST--YI 647 (807)
Q Consensus 574 ~-~~dplg~~~~G~~-v~l~diwP~~~ei~~~~~~~v~~~~~~~~y~~i~~-~~~~w~~l~~~~~~~~~wd~-~st--yi 647 (807)
+ .++-+... =++ +.|++ |+..-+ ++ +..+.+ .++.-..+ +.|.=++ .|+ -+
T Consensus 225 ~~~k~~~~~~--Ps~~l~~~g--~s~sv~---------~~-----~~li~~ia~ds~t~i-----~~~at~e~~s~~sSl 281 (502)
T KOG0454|consen 225 FTGKDSLKVS--PSPFLTLKG--ESPSVL---------PA-----KDLIVSIATDSSTDI-----PRVATMEFSSTTSSL 281 (502)
T ss_pred ccccccccCC--CCceEEeCC--CCcccc---------cc-----ccchhhhhccccccc-----cceecccCCCccccc
Confidence 0 00111000 001 22222 111111 10 000000 00000000 0010010 011 11
Q ss_pred cCCCCCCCCCCCCCCCCCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhc
Q 003617 648 HEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGT 727 (807)
Q Consensus 648 ~~pp~f~~~~~~~~~~~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~ 727 (807)
..++|- -+ --++.|||+||.|+|++ ||+..-... ..++.
T Consensus 282 ~m~~F~-----------tL-----c~vv~dNiDTD~IIP~q----------fltli~~~~---------------~~~~~ 320 (502)
T KOG0454|consen 282 GMETFH-----------TL-----CGVVADNIDTDQIIPAQ----------FLTLIPSTG---------------LILSC 320 (502)
T ss_pred cCccee-----------ee-----ehhhhhhCCcCcccChh----------hhcccccch---------------hhhhh
Confidence 222221 11 12466999999999997 787642221 44566
Q ss_pred ccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 728 FANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 728 f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|.-+++.-.-. ...-.|.++. +.|++. .|+|+|+|||||||||||.|.+...|+|+|||+||++
T Consensus 321 f~~~~~dg~~k-~~~~dFv~~v------------E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~ 384 (502)
T KOG0454|consen 321 FYEVALDGLPK-SFVTDFVLPV------------EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYAR 384 (502)
T ss_pred hhhheecCCch-hhccceeccc------------ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHH
Confidence 66666422100 0011122221 134443 4999999999999999999999999999999999974
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=99.96 E-value=1.7e-30 Score=250.82 Aligned_cols=107 Identities=33% Similarity=0.397 Sum_probs=94.0
Q ss_pred ecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCc
Q 003617 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (807)
Q Consensus 674 ~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~ 753 (807)
|+.+|||||||||||+ ||++| ||-+-+.+.+| ++..|.+. + +-+..+|+.||+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~R--------------~~l~~is~~~~--~~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKYR--------------GHLDNISNNLL--IGAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------ccccc--------------cCHHHHHHHHh--hhhhhhhc-c-ccccccccCCCc
Confidence 5678999999999997 89995 67777778888 44457654 2 335688999999
Q ss_pred ccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 754 ~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
.++++++|++||+.++|||||||+|||||||||||||++++|||+||||+||++
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFar 107 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFAR 107 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999984
No 38
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=8e-26 Score=245.36 Aligned_cols=420 Identities=14% Similarity=0.065 Sum_probs=297.2
Q ss_pred cHHHHHHHHhhhcCCC---CceeEeeecceeEeecCccHhHHHHHHHHHHHHHHcCCCCCccCCCCCEEEEecCCCCcCc
Q 003617 60 KSKDVEKIIDWETTSP---KQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDV 136 (807)
Q Consensus 60 ~~~~ie~il~~~~~~~---~~~ei~~~pdrvl~qD~Tg~~ai~dlaamr~~~~~~G~dp~~i~p~~pv~lviDH~v~~~~ 136 (807)
+|+..++|+++..+.. .+.++...+|-.+.||..+.-+..-+ .++++....+|+|++ +...+||.+-+..
T Consensus 66 p~~vtd~i~a~~~ersL~ymGl~pnt~v~s~~~dkVfigsctn~r------iedlr~aAaVv~g~K-ia~n~k~am~vpg 138 (502)
T KOG0454|consen 66 PMTVTDKILARASERSLVYMGLNPNTNVDSLMTDKVFIGSCTNIR------IEDLREAAAVVDGEK-IAVNPKHAMFVPG 138 (502)
T ss_pred CcccchHHHHhhhhhceeeccCCCCcccceeeecceecccccccc------HHHHhhhhhccccce-eEecccceEEecC
Confidence 6888999998875432 34567778888888888776654332 223344455677764 6778999755543
Q ss_pred ccchHHHHhhhHHHHHHhhhhhhhhhhcccccccceeeCCCCceeecccccccceeeecCCCcccc-CeEEecCCCCccc
Q 003617 137 ARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMI 215 (807)
Q Consensus 137 ~~~~~a~~~n~~~e~~rn~ery~flk~~~~~f~~~~~~ppG~GI~HqV~lE~la~~v~~~~G~~~P-dtvvGtDSHT~~~ 215 (807)
.+ .-.....+++..|-...-.| .|- .+-.+|..-+--.|.||. |+-| .+.-.| ....|+||||++.
T Consensus 139 sg--lvkk~aeaegld~if~eagF-~wr-eagcs~clgmnpd~l~~y---erca------stsnRnfEgrqGa~srThlm 205 (502)
T KOG0454|consen 139 SG--LVKKVAEAEGLDRIFNEAGF-YWR-EAGCSFCLGMNPDGLCHY---ERCA------STSNRNFEGRQGADSRTHLM 205 (502)
T ss_pred ch--hhHhHHHHHhhHHHHHhhce-ehh-hccccccccCCchhccHH---HHhh------hccCCCccccccccccchhh
Confidence 22 11122223333332211112 332 122234444444789987 3222 455566 4689999999999
Q ss_pred CcccceeeccCHHHHHHHHcCCceEeecCcEEEEEEEeecCCCCChhcHHHHHHHHHHhcCcccEEEEEecCccccCChh
Q 003617 216 DGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLA 295 (807)
Q Consensus 216 GalG~lg~GVGg~ea~aam~g~~~~~~vPevvgV~L~G~L~~gVtakDliL~i~~~L~~~G~~gk~VEf~G~gv~~LS~~ 295 (807)
++.+.++-|+|+.++.....++...+++|.++.++|.|..+.-..++|+++.++...-..+-..+..||-+--. +|+++
T Consensus 206 a~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~~s~~s-Sl~m~ 284 (502)
T KOG0454|consen 206 AASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEFSSTTS-SLGME 284 (502)
T ss_pred hhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchhhhhccccccccceecccCCCccc-cccCc
Confidence 99999999999999999999889999999999999999999999999999999888888888899999976555 89999
Q ss_pred hhhhhhccCcccCceeeeecCChHHHHHHhhcCCCcchHHHHHHHHHHhhccccCCCCCC-CCcccEEEEEEcCCceeec
Q 003617 296 DRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQS-ERVYSSYLELNLEEVVPCV 374 (807)
Q Consensus 296 dRaTI~NMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~~~~~y~~~~~l~~~~~~~D~-~a~Y~~vieiDLs~veP~v 374 (807)
.|+|||||..|-+-|-+++|.+-.|+-|-....++.. + -|+ .|. ++.|...+.+|.+.++|..
T Consensus 285 ~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~~~----~dg~~k~~~~dFv~~vE~~~~~s 348 (502)
T KOG0454|consen 285 TFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----EVA----LDGLPKSFVTDFVLPVEPLRKYS 348 (502)
T ss_pred ceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----hhe----ecCCchhhccceeccccccceeE
Confidence 9999999999999999999988776665443333221 1 121 222 3678899999999999999
Q ss_pred cCCCCCCCcccCCccccchHHhhcccccCCCcCCccccccccceeecCCCccccCCCCEEEEEeccCCCCCChhHHHHHH
Q 003617 375 SGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAA 454 (807)
Q Consensus 375 AgP~~P~~~~~vse~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~ 454 (807)
..|+. ||.=-=|+- .|-.|...++|+|+-..-++.|
T Consensus 349 iii~~-DNFGCGSSR---------------------------------------EHAPv~L~~~GakaivA~Sya~---- 384 (502)
T KOG0454|consen 349 IIIGG-DNFGCGSSR---------------------------------------EHAPVCLGAAGAKAIVAPSYAR---- 384 (502)
T ss_pred EEecc-CCccccccc---------------------------------------ccCcchhhhcccceecchhHHH----
Confidence 88887 654211111 1345667899999999888755
Q ss_pred HHHHHHHhcCCccCCceeEEEecCcHHHHH-----HHHHc---CcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhc
Q 003617 455 LVAKKACELGLEVKPWIKTSLAPGSGVVTK-----YLQNS---GLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAIT 526 (807)
Q Consensus 455 lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~-----~l~~~---Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~ 526 (807)
+.+|+-++.|+.++ +...+.|-.+.++. .+..+ -++.+++..+..=+.|-|..|.++.-+ .+-...+
T Consensus 385 IFfrN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~ad---~I~~~~~ 459 (502)
T KOG0454|consen 385 IFFRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVIDAD---GIFAYAR 459 (502)
T ss_pred HHHHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecccceeecCcccccCcccCch---HHHHhhc
Confidence 45667788899887 34455555543322 12221 255667777776678999999998511 1222222
Q ss_pred cCCeEEEEeeccCCCCCCCCCCCCCceEecCHHHHHHHHHhCc
Q 003617 527 ENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGS 569 (807)
Q Consensus 527 ~~~~~~~~VsS~NRNF~GR~g~~~~~~yLaSP~lVaA~AlaG~ 569 (807)
+ + .+|+|+||||++|||....++|||||.+|+|+++.|+
T Consensus 460 k-e---~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 460 K-E---GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred c-c---cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 2 2 2689999999999999999999999999999999998
No 39
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.91 E-value=4.2e-26 Score=217.89 Aligned_cols=110 Identities=35% Similarity=0.395 Sum_probs=101.4
Q ss_pred HHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcccchhhHHHhhhhCCCceEEEecC
Q 003617 698 KYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGA 777 (807)
Q Consensus 698 ~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~ 777 (807)
+||+.+|+...++|||++||+||++|.+++|.|.++.|.+..+...+.+.+.++++.+++++.+.+|+.++.++||+||+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 48999999999999999999999999999999999999999888888899999999999999999999888888999999
Q ss_pred cccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 778 EYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 778 nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|||||||||||||+++++||+||||+||++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 112 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFAR 112 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-H
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHH
Confidence 999999999999999999999999999984
No 40
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.85 E-value=1.4e-22 Score=191.81 Aligned_cols=86 Identities=38% Similarity=0.519 Sum_probs=69.8
Q ss_pred ecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCc
Q 003617 674 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGE 753 (807)
Q Consensus 674 ~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~ 753 (807)
++|||||||||+|++. +||.++ ++.+.|.+++|.+.+
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~~--------------~~~~~l~~~~f~~~~--------------------- 37 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPLR--------------SNIPAISEFVFHRVD--------------------- 37 (121)
T ss_pred CCCCcCChhhcCCCCc--------cccccC--------------CCHHHHHHhhccCCC---------------------
Confidence 5899999999999973 366653 566778888887643
Q ss_pred ccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 754 KLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 754 ~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.+++..+ +.|||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 38 ----p~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 86 (121)
T cd01579 38 ----PTFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFAR 86 (121)
T ss_pred ----chHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHH
Confidence 23445555533 57999999999999999999999999999999999984
No 41
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=99.84 E-value=3.5e-22 Score=196.52 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=70.5
Q ss_pred EEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEec
Q 003617 670 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 749 (807)
Q Consensus 670 ~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~ 749 (807)
|++ ++||||+||||.|+. ||+. .|.+.|.++.|+++|
T Consensus 2 rv~-~~gdnIdTD~I~P~~----------~l~~---------------~~~~~l~~~~f~~~~----------------- 38 (156)
T TIGR02084 2 KVH-KYGDNVDTDVIIPAR----------YLNT---------------SDPKELAKHCMEDLD----------------- 38 (156)
T ss_pred ceE-EcCCCccHhhccHHH----------HcCc---------------CCHHHHHhhhhccCC-----------------
Confidence 444 899999999999984 8863 345678899998775
Q ss_pred CCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 750 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 750 ~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++++|+.. .|||||+|||||||||||+|+++.+||+||||+|||+
T Consensus 39 --------p~f~~~~~~g---~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFar 85 (156)
T TIGR02084 39 --------KDFVKKVKEG---DIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFAR 85 (156)
T ss_pred --------hhHHhhcCCC---CEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHH
Confidence 2445677654 5999999999999999999999999999999999984
No 42
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=99.84 E-value=5.4e-22 Score=197.12 Aligned_cols=85 Identities=27% Similarity=0.411 Sum_probs=71.2
Q ss_pred EEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEec
Q 003617 670 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 749 (807)
Q Consensus 670 ~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~ 749 (807)
||+ ++||||+||||+|+. ||+.. .|.+.|.++.|.+.|
T Consensus 3 rv~-~~gdnIdTD~IiPa~----------~l~~~--------------~~~~~l~~~~f~~~~----------------- 40 (166)
T PRK14023 3 RVW-KFGDNINTDDILPGK----------YAPFM--------------VGEDRFHNYAFAHLR----------------- 40 (166)
T ss_pred ceE-EcCCCcchhhcchHH----------HhccC--------------CCHHHHHhhhccCCC-----------------
Confidence 555 899999999999984 88762 345678888887765
Q ss_pred CCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 750 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 750 ~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.+|+.. .|||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 41 --------p~f~~~~~~g---~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~ 87 (166)
T PRK14023 41 --------PEFASTVRPG---DILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYAR 87 (166)
T ss_pred --------hhhHhhcCCC---CEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHH
Confidence 2445677764 4999999999999999999999999999999999984
No 43
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=99.84 E-value=5.7e-22 Score=196.63 Aligned_cols=85 Identities=27% Similarity=0.408 Sum_probs=70.3
Q ss_pred cEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEe
Q 003617 669 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIH 748 (807)
Q Consensus 669 ~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~ 748 (807)
.|++ |+||||+||||+|+. ||+. .|.+.|.++.|.++|
T Consensus 2 grv~-~~gdnIdTD~I~P~~----------~l~~---------------~~~~~l~~~~f~~~~---------------- 39 (163)
T PRK00439 2 GRVW-KFGDNIDTDVIIPAR----------YLNT---------------SDPQELAKHCMEDLD---------------- 39 (163)
T ss_pred CeEE-EeCCCCchhhCChHH----------HhCC---------------CCHHHHHHHHhccCC----------------
Confidence 3565 899999999999984 8866 245668899998886
Q ss_pred cCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 749 IPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 749 ~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.+.+.. .|||||+|||||||||||||+++.+|++||||+|||+
T Consensus 40 ---------p~f~~~~~~g---~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 86 (163)
T PRK00439 40 ---------PEFAKKVKPG---DIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFAR 86 (163)
T ss_pred ---------cchHhhcCCc---eEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHH
Confidence 1334455542 5999999999999999999999999999999999984
No 44
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=99.84 E-value=5.7e-22 Score=197.81 Aligned_cols=92 Identities=22% Similarity=0.409 Sum_probs=75.2
Q ss_pred CcEEEEecC-CCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCce
Q 003617 668 GAYCLLNFG-DSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT 746 (807)
Q Consensus 668 ~~~vl~~~g-d~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~ 746 (807)
..+++ ++| |||+||+|+|+. ||+.. ++.+ +.++.|..+|+.. ..|.
T Consensus 8 ~G~~~-pl~~dnIDTD~IIP~~----------fLk~i--~~~g-------------l~k~~f~~~r~~~-------PdF~ 54 (191)
T COG0066 8 TGRVW-PLGRDNVDTDQIIPKR----------FLKTI--TRTG-------------LGKHLFEDWRYLD-------PDFV 54 (191)
T ss_pred eeeEE-ecCCCCCccccCccHH----------Hhccc--CHhh-------------hhhcccccccccC-------cchh
Confidence 44666 566 999999999984 99884 4443 6678999998532 2366
Q ss_pred EecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 747 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 747 ~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++.| +|+.+. |+|||+|||||||||||+|+++.+|++||||+||||
T Consensus 55 ~n~~------------~yq~g~---IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAd 100 (191)
T COG0066 55 LNVP------------PYQGGD---ILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFAD 100 (191)
T ss_pred hcCC------------ccCCcc---EEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHH
Confidence 6665 777654 999999999999999999999999999999999985
No 45
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=99.83 E-value=7.8e-22 Score=193.81 Aligned_cols=84 Identities=29% Similarity=0.408 Sum_probs=69.7
Q ss_pred EEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEec
Q 003617 670 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHI 749 (807)
Q Consensus 670 ~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~ 749 (807)
||+ ++||||+||||+|+. ||+. .+.|.|.++.|.++|
T Consensus 2 rv~-~~gdnIdTD~IiP~~----------~l~~---------------~~~~~l~~~~f~~~~----------------- 38 (154)
T TIGR02087 2 RVW-KFGDDIDTDEIIPGR----------YLRT---------------TDPDELASHAMEGID----------------- 38 (154)
T ss_pred ceE-EcCCCcchhhCcHHH----------HhCc---------------CCHHHHHhhccCcCC-----------------
Confidence 455 799999999999984 8865 244668899998875
Q ss_pred CCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 750 PTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 750 ~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.+.+.. .|||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 39 --------p~f~~~~~~g---~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 85 (154)
T TIGR02087 39 --------PEFAKKVRPG---DVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFAR 85 (154)
T ss_pred --------chhhhcCCCC---cEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHH
Confidence 2444455553 5999999999999999999999999999999999984
No 46
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.81 E-value=6.5e-21 Score=194.30 Aligned_cols=97 Identities=22% Similarity=0.354 Sum_probs=76.7
Q ss_pred CcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCC-ce
Q 003617 668 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP-KT 746 (807)
Q Consensus 668 ~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~-~~ 746 (807)
..+++...||||+||+|+|+. ||+.. + .+.|.++.|.++|+... +...+ |.
T Consensus 8 ~G~~~~l~~dnIDTD~IiPa~----------fl~~~--~-------------~~~l~~~~f~~~r~~~~---~~~~p~F~ 59 (200)
T PRK01641 8 TGLAVPLDRANVDTDQIIPKQ----------FLKRI--T-------------RTGFGKGLFDDWRYLDD---GQPNPDFV 59 (200)
T ss_pred EEEEEEcCCCCCChhhcchHh----------HcCcC--C-------------HHHHHHhhhcccccccc---CCCCCCcc
Confidence 467887779999999999985 88662 2 34588999999986433 22222 43
Q ss_pred EecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 747 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 747 ~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++. ++|+... |||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 60 ln~------------~~~~~~~---IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~ 105 (200)
T PRK01641 60 LNQ------------PRYQGAS---ILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFAD 105 (200)
T ss_pred ccc------------cccCCCe---EEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHH
Confidence 333 3777654 999999999999999999999999999999999984
No 47
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=99.80 E-value=1e-20 Score=191.06 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=77.3
Q ss_pred ccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCC-CCCC
Q 003617 666 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNG-EVGP 744 (807)
Q Consensus 666 i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~-~~g~ 744 (807)
....|++...||||+||+|+|+. ||+.. + .+.+.++.|.++|+.+. .| ...+
T Consensus 6 ~~~G~~~~l~~dnIDTD~IiP~r----------fl~~~--~-------------~~~l~~~~f~~~R~~~~--~g~~~~p 58 (188)
T TIGR00171 6 SHTGLVAPLDAANVDTDAIIPKQ----------FLKRI--T-------------RTGFGKHLFFDWRFLDA--NGKEPNP 58 (188)
T ss_pred EEEEEEEECCCCcCcHhhhhHHH----------HhCcC--C-------------HHHHHHhcccccccccc--ccCCCCc
Confidence 34567776559999999999985 99762 2 34588999999997421 11 1111
Q ss_pred -ceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 745 -KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 745 -~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
|.+|.+ .|+... |||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 59 ~F~ln~~------------~~~~~~---IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~ 107 (188)
T TIGR00171 59 DFVLNQP------------QYQGAS---ILLARENFGCGSSREHAPWALDDYGFKVIIAPSFAD 107 (188)
T ss_pred chhhccc------------ccCCCc---EEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHH
Confidence 444443 787754 999999999999999999999999999999999984
No 48
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=99.79 E-value=3.2e-20 Score=192.98 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=72.0
Q ss_pred ccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCc---hhhhhhhcccccchhhhccCCCC
Q 003617 666 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGN---DEIMARGTFANIRLVNKLLNGEV 742 (807)
Q Consensus 666 i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn---~evm~rg~f~n~r~~n~~~~~~~ 742 (807)
....||+ ++||||+||||+|++ ||+.. ++| .+.|.++.|..++ ...
T Consensus 68 ~~~Grv~-k~gDNIdTD~IiPa~----------~l~~~-------------~sn~~~~~~l~~~~F~~l~-~~~------ 116 (246)
T PLN00072 68 TFHGLCF-VVGDNIDTDQIIPAE----------YLTLV-------------PSKPDEYEKLGSYALIGLP-AFY------ 116 (246)
T ss_pred eEEEeEE-EeCCCcchhhcccHH----------Hhccc-------------cccCCCHHHHHHhhhccCC-cch------
Confidence 3457886 899999999999996 88763 233 5678899998774 010
Q ss_pred CCceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 743 GPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 743 g~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
+.+....|+.. .. ..|||||+|||||||||||+|+++.+||+||||+|||+
T Consensus 117 --~~r~v~~Gd~~----------~~--~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFAr 167 (246)
T PLN00072 117 --KTRFVEPGEMK----------TK--YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYAR 167 (246)
T ss_pred --hhcccCCCCCC----------CC--ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHH
Confidence 11111222211 11 15999999999999999999999999999999999985
No 49
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.75 E-value=2.3e-19 Score=169.59 Aligned_cols=82 Identities=26% Similarity=0.342 Sum_probs=65.2
Q ss_pred cCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCceEecCCCcc
Q 003617 675 FGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEK 754 (807)
Q Consensus 675 ~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~~~~~~g~~ 754 (807)
..|||+||||+|+. ||.... ...|.|.+..|.+++
T Consensus 2 ~~DnInTD~IiP~~----------y~~~~~-------------~~~e~la~~~~e~~d---------------------- 36 (129)
T cd01674 2 DADNLNTDGIYPGK----------YTYQDD-------------ITPEKMAEVCMENYD---------------------- 36 (129)
T ss_pred CccccchhccCccc----------ccccCC-------------CCHHHHHHhhcccCC----------------------
Confidence 35899999999996 772211 134568888887664
Q ss_pred cchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 755 LSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 755 ~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
++++.+.+.. .|||+|+|||||||||||+++++.+||+||||+|||+
T Consensus 37 ---p~f~~~v~~g---dilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~ 83 (129)
T cd01674 37 ---SEFSTKTKQG---DILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGN 83 (129)
T ss_pred ---chhhhcCCCC---CEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHH
Confidence 2455566654 4999999999999999999999999999999999984
No 50
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.72 E-value=1.5e-18 Score=155.37 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=35.6
Q ss_pred eEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 771 TVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 771 ~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
+|||||+|||||||||||+|+++++|+++|||+||++
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~ 53 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFAR 53 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHH
Confidence 5999999999999999999999999999999999974
No 51
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.72 E-value=8.8e-19 Score=157.91 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=35.5
Q ss_pred eEEEecCcccCCCCchhhhhcccccCCcEEEecCCCC
Q 003617 771 TVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 771 ~iivag~nyG~GSSRe~Aa~~~~~lGv~aVIA~Sfa~ 807 (807)
.|||+|+|||||||||||+|+++++|+++|||+||++
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~ 55 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFAR 55 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHH
Confidence 4999999999999999999999999999999999974
No 52
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.59 E-value=5.4e-16 Score=148.33 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=34.1
Q ss_pred EEEecCcccCCCCchhhhhccc------------ccCCcEEEecCCCC
Q 003617 772 VILAGAEYGSGSSRDWAAKGPM------------LLVNPCIMSDFCSG 807 (807)
Q Consensus 772 iivag~nyG~GSSRe~Aa~~~~------------~lGv~aVIA~Sfa~ 807 (807)
|+|+|+|||||||||||+++++ .+|++||||+|||+
T Consensus 53 ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~ 100 (131)
T cd01576 53 VAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAP 100 (131)
T ss_pred EEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhH
Confidence 9999999999999999999997 77999999999985
No 53
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.50 E-value=9.5e-15 Score=172.91 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=70.5
Q ss_pred CCccCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCC
Q 003617 664 HGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVG 743 (807)
Q Consensus 664 ~~i~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g 743 (807)
++-...+| +|+||+|+|||||||+ |+.+ |.|.+.+.+..|.+.+
T Consensus 163 ~~~i~g~V-~KvgdnInTD~I~Pa~----------~~~~--------------Rsdipl~a~~~~e~~~----------- 206 (835)
T PRK09238 163 PEKITVTV-FKVTGETNTDDLSPAP----------DAWS--------------RPDIPLHALAMLKNRR----------- 206 (835)
T ss_pred ccccEEEE-EEeCCCCchhccCCcc----------cccc--------------CCCHHHHHHHhccCCC-----------
Confidence 34445788 5999999999999997 6644 4677777777776553
Q ss_pred CceEecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcc------------cccCCcEEEecCCCC
Q 003617 744 PKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP------------MLLVNPCIMSDFCSG 807 (807)
Q Consensus 744 ~~~~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~------------~~lGv~aVIA~Sfa~ 807 (807)
| .+.+.+++++..|. .|+|+|+|||||||||||++++ +..+.++|||+|||+
T Consensus 207 ------p-----~f~~~i~~~~~~G~-~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfAr 270 (835)
T PRK09238 207 ------P-----GPIKQIEELKKKGH-PVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAP 270 (835)
T ss_pred ------C-----cHHHHHHhhccCCC-EEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHH
Confidence 1 02344444443453 3899999999999999999995 333459999999985
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.24 E-value=5.2e-12 Score=149.68 Aligned_cols=92 Identities=22% Similarity=0.163 Sum_probs=67.7
Q ss_pred cCcEEEEecCCCcccCccccCCCCCCCCHHHHHHHhcCCCccccccccCcCCchhhhhhhcccccchhhhccCCCCCCce
Q 003617 667 KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKT 746 (807)
Q Consensus 667 ~~~~vl~~~gd~itTDhIsPag~i~~~s~a~~~L~~~G~~~~~~nsygsrrgn~evm~rg~f~n~r~~n~~~~~~~g~~~ 746 (807)
...+|+ |+||+|+||+|||+. ||..| .+.+.+.+..|.+.+ ++ +
T Consensus 167 i~g~V~-k~gddinTD~i~Pa~----------~a~sr--------------~D~~~~a~~m~~~~~---------p~-~- 210 (844)
T TIGR00117 167 ITVTVF-KVTGETNTDDLSPAP----------DAWTR--------------PDIPLHALAMLKNAR---------EG-I- 210 (844)
T ss_pred eEEEEE-EeCCCCchhccCChh----------hhhcC--------------CCHHHHHHHHhhcCC---------cc-H-
Confidence 346777 899999999999996 88774 345556666665443 00 0
Q ss_pred EecCCCcccchhhHHHhhhhCCCceEEEecCcccCCCCchhhhhcc-------------cccCCcEEEecCCCC
Q 003617 747 IHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLVNPCIMSDFCSG 807 (807)
Q Consensus 747 ~~~~~g~~~~i~~~a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~-------------~~lGv~aVIA~Sfa~ 807 (807)
....+ +.++.|.| |+|+|+|||||||||||+.+. +.+| .+|||+|||+
T Consensus 211 ----------~~~i~-~~~~~Gd~-iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfAr 271 (844)
T TIGR00117 211 ----------EPQIE-ALKQKGFP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAP 271 (844)
T ss_pred ----------HHHHH-HhccCCCe-EEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChH
Confidence 01111 23444544 889999999999999999999 9999 9999999985
No 55
>PLN00094 aconitate hydratase 2; Provisional
Probab=98.38 E-value=3.2e-07 Score=109.74 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=39.8
Q ss_pred HhhhhCCCceEEEecCcccCCCCchhhhhcc-------------cccCCcEEEecCCCC
Q 003617 762 MRYKNEGHDTVILAGAEYGSGSSRDWAAKGP-------------MLLVNPCIMSDFCSG 807 (807)
Q Consensus 762 ~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~-------------~~lGv~aVIA~Sfa~ 807 (807)
...|+.|.| |+|+|+|||||||||||+.+. +-.|+.+ ||+|||+
T Consensus 286 ~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfAr 342 (938)
T PLN00094 286 EELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAP 342 (938)
T ss_pred HHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecH
Confidence 467888887 677899999999999999999 9999999 9999985
No 56
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=95.98 E-value=0.019 Score=65.41 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=60.3
Q ss_pred CCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 003617 431 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 507 (807)
Q Consensus 431 g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GC 507 (807)
.+|+.++|| |=--|.+.++..|.+| +|+++++.++++|. -|+.|+..+.+.|+.+.|+++|.+|+.-.|
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 356677776 7888899999999999 99999999888766 678899999999999999999999997665
No 57
>COG1679 Predicted aconitase [General function prediction only]
Probab=93.88 E-value=0.15 Score=57.29 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCc
Q 003617 431 GDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGC 507 (807)
Q Consensus 431 g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GC 507 (807)
+.++..+|| |---|.+.++..|.+| +|++-++.+.++|+ -|++|+.++.+.|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345677776 7777899999999999 88888888777665 689999999999999999999999997554
No 58
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=90.62 E-value=0.12 Score=53.30 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=21.0
Q ss_pred HHhhhhCCCceEEEecCcccCCCCchhhhhcc
Q 003617 761 AMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP 792 (807)
Q Consensus 761 a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~ 792 (807)
-+..|+.|.|++.| |.--|.||||--|.-..
T Consensus 46 i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSv 76 (204)
T PF06434_consen 46 IEELKEKGHPLAYV-GDVVGTGSSRKSATNSV 76 (204)
T ss_dssp HHHHHTTSS-EEEE-EEEEEES---THHHHHH
T ss_pred HHHHHHcCCcEEEe-cCccccCcccchhhhhh
Confidence 34667889887777 88999999999887554
No 59
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=89.65 E-value=0.73 Score=52.60 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=57.0
Q ss_pred CEEEEEeccCCCCCChhHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCccccc
Q 003617 432 DVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCI 511 (807)
Q Consensus 432 ~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~p~Vk~~v~PgS~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~Ci 511 (807)
++++++| .|=--|.+.++.-|.+| +|+++++.++++|. -|+.|+ +.+.|+.+.|+++|+.|+.-.|. |+
T Consensus 278 ~~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v 346 (389)
T cd01355 278 EPDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VV 346 (389)
T ss_pred CCCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-ee
Confidence 3567777 57888899999999999 89877777776555 567777 99999999999999999997777 66
Q ss_pred C
Q 003617 512 G 512 (807)
Q Consensus 512 G 512 (807)
-
T Consensus 347 ~ 347 (389)
T cd01355 347 S 347 (389)
T ss_pred e
Confidence 4
No 60
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=31.58 E-value=26 Score=31.70 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.2
Q ss_pred EeccCCCCCChhHHHHHHHHHHHHHhcCCccC
Q 003617 437 AITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (807)
Q Consensus 437 ~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 468 (807)
+|++|..+.-.. .+||..|.+.|.+.|.+++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 689999997776 4588889899999999888
No 61
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.48 E-value=50 Score=32.21 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=27.5
Q ss_pred EEEeccCCCCCChhHHHHHHHHHHHHHhcCCccC
Q 003617 435 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (807)
Q Consensus 435 ~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 468 (807)
+++||+|..|=---. +||.-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTy-MAAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTY-MAAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHH-HHHHHHHHHHHHcCCeEE
Confidence 789999999965554 478888899999999888
No 62
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=27.72 E-value=1.1e+02 Score=37.10 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=22.7
Q ss_pred HHhhhhCCCceEEEecCcccCCCCchhhhhcc
Q 003617 761 AMRYKNEGHDTVILAGAEYGSGSSRDWAAKGP 792 (807)
Q Consensus 761 a~~y~~~~~~~iivag~nyG~GSSRe~Aa~~~ 792 (807)
-+..++.|+|++.| |.--|.||||--|.-..
T Consensus 214 i~~lk~Kg~~vayv-gdvvGtGSSRkSa~Nsv 244 (852)
T COG1049 214 IEALKQKGHPVAYV-GDVVGTGSSRKSATNSV 244 (852)
T ss_pred HHHHhhcCceEEEe-ccccccCccccccccee
Confidence 34667888886665 55789999998776543
No 63
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=27.08 E-value=57 Score=31.73 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=24.8
Q ss_pred cEEeccCcccccCCCCCCChHHHhhhc---cCCeEEEEeeccCCCC
Q 003617 500 FHIVGYGCTTCIGNSGDIDDAVAAAIT---ENDIVAAAVLSGNRNF 542 (807)
Q Consensus 500 f~v~~~GCg~CiG~~g~l~~~~~~~i~---~~~~~~~~VsS~NRNF 542 (807)
|.++.|.=+..-+ .+.++..+.+-+. +...+...|.||||||
T Consensus 41 ~vLitpTy~~G~~-~~~vp~~v~~FL~~~~N~~~l~GVigSGNrNf 85 (122)
T PF07972_consen 41 FVLITPTYGFGEN-DGGVPKQVIRFLENPDNRKLLRGVIGSGNRNF 85 (122)
T ss_dssp EEEEEE-BTTTBS-STSS-HHHHHHHHSHHHGGGEEEEEEEE-GGG
T ss_pred EEEEecccCCCCC-CCCCCHHHHHHHHHHHHHhhheeEEecCCcHH
Confidence 4444444333333 3447888888777 5556666688999999
No 64
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=26.67 E-value=60 Score=31.86 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.3
Q ss_pred CCCChHHHhhh---ccCCeEEEEeeccCCCC
Q 003617 515 GDIDDAVAAAI---TENDIVAAAVLSGNRNF 542 (807)
Q Consensus 515 g~l~~~~~~~i---~~~~~~~~~VsS~NRNF 542 (807)
|.+++.+.+-+ .+.+++.+.+.||||||
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~ 86 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNF 86 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchH
Confidence 56788887777 45577788889999999
No 65
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=26.42 E-value=1.5e+02 Score=33.40 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=51.2
Q ss_pred CCCC-hhhhHHHhhhccccCc----ccccHHHHHHHHhhhcCCCCceeEeeecceeEeecCccHhHHHHHHHH-HHHHHH
Q 003617 37 DKLP-YSIKILLESAIRNCDE----FQVKSKDVEKIIDWETTSPKQVEIPFKPARVLLQDFTGVPAVVDLACM-RDAMNK 110 (807)
Q Consensus 37 ~~LP-~sirvLlEn~lR~~d~----~~~~~~~ie~il~~~~~~~~~~ei~~~pdrvl~qD~Tg~~ai~dlaam-r~~~~~ 110 (807)
..+| .++|-||..+..+.=+ +....+.++.++........+..+.+.+..+ ++.|...+..++.+ ++..++
T Consensus 5 ~~m~lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~---~~~g~~~~~~~~~~~~~~a~~ 81 (321)
T PRK07084 5 KELGLVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGAR---KYANATLLRYMAQGAVEYAKE 81 (321)
T ss_pred hhccccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHH---hhCCchHHHHHHHHHHHHHHH
Confidence 4466 4888888877665311 1336888999997775555555666666543 55664333334333 333333
Q ss_pred cCCCCCccCCCCCEEEEecCC
Q 003617 111 LGGDSNKINPLVPVDLVIDHS 131 (807)
Q Consensus 111 ~G~dp~~i~p~~pv~lviDH~ 131 (807)
.+ ..+||.|+.||.
T Consensus 82 a~-------~~VPV~lHLDHg 95 (321)
T PRK07084 82 LG-------CPIPIVLHLDHG 95 (321)
T ss_pred cC-------CCCcEEEECCCC
Confidence 32 236899999996
No 66
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=21.88 E-value=99 Score=32.40 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=44.2
Q ss_pred ceeEEEecC--cHHHHHHHHHcCcHHHHHhcCcEEeccCcccccCCCCCCChHHHhhhccCCeEEEEeeccCCCCCCCCC
Q 003617 470 WIKTSLAPG--SGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVH 547 (807)
Q Consensus 470 ~Vk~~v~Pg--S~~V~~~l~~~Gl~~~l~~aGf~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g 547 (807)
.+.-.|.|| |-.+.+-+.+.|+++.|.+.=.. --|-=|||-|+- -|..++.+. .+......-=-+-+||.-||+=
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ~ 114 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQV 114 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEcccccccc
Confidence 467789999 66778889999999988764332 234457899872 111122110 0111111111256899999983
No 67
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=20.31 E-value=75 Score=30.46 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred EEEeccCCCCCChhHHHHHHHHHHHHHhcCCccC
Q 003617 435 IAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (807)
Q Consensus 435 ~a~IgSCTN~s~~dl~~aA~lLak~A~~~G~kv~ 468 (807)
+.+|++|..+.-.. .+||..|.+.|.+.|.+++
T Consensus 5 ivaVtacp~GiAht-~lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 5 LVAVTACVSGVAHT-YMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEeeCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 67899999997776 4588889899999999888
Done!