Query 003617
Match_columns 807
No_of_seqs 303 out of 2666
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 18:23:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003617.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1666-1670//hhsearch_pdb/003617hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 1.0 1 1 1966.6 57.4 800 4-807 1-801 (888)
2 1c96_A Mitochondrial aconitase 1.0 1 1 1376.3 48.3 618 59-807 33-665 (753)
3 1l5j_A Aconitate hydratase 2; 1.0 1 1 862.3 38.5 454 37-618 343-844 (865)
4 1l5j_A Aconitate hydratase 2; 1.0 1 1 252.2 -9.0 209 540-807 47-280 (865)
5 2hcu_A 3-isopropylmalate dehyd 1.0 1 1 211.6 4.0 117 649-807 4-123 (213)
6 2pkp_A Homoaconitase small sub 1.0 1 1 178.9 3.4 86 668-807 4-89 (170)
7 1v7l_A 3-isopropylmalate dehyd 1.0 1 1 177.6 2.8 85 669-807 5-89 (163)
8 3vba_A Isopropylmalate/citrama 1.0 1 1 176.0 3.4 88 666-807 4-91 (176)
9 3q3w_A 3-isopropylmalate dehyd 1.0 1 1 175.9 0.3 100 665-807 8-110 (203)
10 3h5j_A 3-isopropylmalate dehyd 1.0 1 1 172.4 3.3 95 665-807 8-102 (171)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=1.00 E-value=1 Score=1966.62 Aligned_cols=800 Identities=60% Similarity=1.050 Sum_probs=759.9
Q ss_pred CCCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99710012410069997225997078999999899981346777320024585566399999998211499994069630
Q 003617 4 ENPFKSILKTLQRPDGGEFGKYYSLPALNDPRIDKLPYSIKILLESAIRNCDEFQVKSKDVEKIIDWETTSPKQVEIPFK 83 (807)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~LP~sirvLlEn~lR~~d~~~v~~~~iekIl~~~~~~~~~~ei~~~ 83 (807)
.|||...+++|...++ .|+||+|++++...+++|||||||||||+|||||+..+++++++++..|..+..++.+|.|+
T Consensus 1 ~~~~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~lp~s~rvlle~~~r~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 78 (888)
T 2b3y_A 1 SNPFAHLAEPLDPVQP--GKKFFNLNKLEDSRYGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIEVPFK 78 (888)
T ss_dssp CCTTGGGEEESCTTST--TCEEECGGGGCCTTGGGSCHHHHHHHHHHHHTCCSSSSCHHHHHHHHTHHHHTTTTCEEEEC
T ss_pred CCCHHHHHCCCCCCCC--EEEEEEHHHCCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 9820454332678896--26999847726332310883299999888750578633699999996543468989778896
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24457415862769999999999999919998743788887999369987584341679985039999994331114422
Q 003617 84 PARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKW 163 (807)
Q Consensus 84 pdrvl~qD~TG~~ai~dlaamrd~~~~~G~dp~~inp~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw 163 (807)
||||++||+||+|+++||++||++++++|.||.++||.+|+++++||+||++.++..+|..+|+.+||+||+|||.||||
T Consensus 79 pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w 158 (888)
T 2b3y_A 79 PARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158 (888)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 44788774635789999999899998619984333778870699579987677665477999999999985215777898
Q ss_pred CCCCCCCCEEECCCCCEEECCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEEC
Q ss_conf 01224662020899943300002211105541798334683773289875568644034126789999999289168445
Q 003617 164 GSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVL 243 (807)
Q Consensus 164 ~~~~f~~~~v~ppG~GI~HQv~lE~la~vv~~~~G~~~PdtivGtDSHT~~~galG~la~GVGg~ea~aamlg~~~~l~v 243 (807)
++++|+||+|+|||+|||||||+||||+|||.++|+++|||||||||||||+||||+|||||||+|++++|+|||+||++
T Consensus 159 ~~~~f~~~~~~~pG~GI~Hqv~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~ 238 (888)
T 2b3y_A 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVL 238 (888)
T ss_dssp HHHHSTTEEEECTTSCCHHHHHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEEC
T ss_pred HHHHCCCCCCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEECC
T ss_conf 89764487888999888065425341554212576113672885688765567440589746889999999559076048
Q ss_pred CCEEEEEEEEECCCCCCHHCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 81899999702699999330899999999964821179999648666678100132302472238404111287679999
Q 003617 244 PGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQY 323 (807)
Q Consensus 244 PevVgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~VEF~G~Gv~~Lsv~dRaTIaNMa~E~GAt~~~Fp~De~T~~Y 323 (807)
||||+|+|+|+|++|||||||||+|+++||++|++||||||+|||+++||+++|||||||++|||||+|+||+|++|++|
T Consensus 239 PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~Y 318 (888)
T 2b3y_A 239 PQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITY 318 (888)
T ss_dssp CCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHH
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHCCHHHCCEEEEECCCHHHHHH
T ss_conf 97889999704898946568999999996638855559999467325466121010530226549705785683889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 9660999305899999999800002489999-998202799998688301003899999732377551106875204346
Q 003617 324 LKLTGRSDDTVSMIESYLRANKMFVDYSEPQ-SERVYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVG 402 (807)
Q Consensus 324 L~~tgr~~~~~~~v~~y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~ieP~VAgP~~P~~~~~lse~~~~~~~~~~~~~~ 402 (807)
|+.|||++++++++|+|++++++|++.. +| ++|+|+++++||||+|||+||||++|||+++|++++.+|.+++..+++
T Consensus 319 L~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g 397 (888)
T 2b3y_A 319 LVQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQG 397 (888)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSB
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEEEHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9864984677877899999899875348-887898467999987100557412889933000867722347776521122
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHH
Q ss_conf 77767850011333011028975434787789997205789999569999999999998569944885219995384999
Q 003617 403 FKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVV 482 (807)
Q Consensus 403 ~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~p~Vk~~vaPgS~~V 482 (807)
.+|+......+...+.++++|+++.|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|
T Consensus 398 ~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V 477 (888)
T 2b3y_A 398 FKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVV 477 (888)
T ss_dssp TTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHH
T ss_pred CCCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHH
T ss_conf 34445320010245124118950223688688999806878985779999999999998669977998539996898999
Q ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHH
Q ss_conf 99999869189998459399346753344898999757886420497189886115777789979988861734989999
Q 003617 483 TKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVV 562 (807)
Q Consensus 483 ~~~l~~~Gll~~L~~aG~~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~~~~~~YLaSP~lVa 562 (807)
++||+++||+++|+++||.|++||||+||||+++++++++++|.+||+++++|||+||||+||||+..+++|||||+|||
T Consensus 478 ~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lva 557 (888)
T 2b3y_A 478 TYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVI 557 (888)
T ss_dssp HHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCEEECCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf 99999839699999769899678874103787887730343320487148999526778676789876555755899999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99870854457877875348999512213589990667876420468301320012235799666554679987311399
Q 003617 563 AYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDP 642 (807)
Q Consensus 563 A~AlaG~I~~d~~~~plg~~~~g~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~ 642 (807)
||||+|+|+||+++||+|.+++|++|||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.+++|+|++
T Consensus 558 A~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~ 637 (888)
T 2b3y_A 558 AYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNS 637 (888)
T ss_dssp HHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCT
T ss_pred HHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860731136545865558899830023568863556899872289877444430135775001357788887546688
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98411189998879889999887547389986399866574046998899987888987608895345545676785455
Q 003617 643 KSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEI 722 (807)
Q Consensus 643 ~styi~~pp~f~~~~~~~~~~~~~~~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~ev 722 (807)
+||||++||||++++..+++++++.++|+|+++|||||||||||||+|+++||||+||+++|+.+++|||||||||||||
T Consensus 638 ~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~v 717 (888)
T 2b3y_A 638 KSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAV 717 (888)
T ss_dssp TCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCHHH
T ss_conf 76524589986655567888666337579997168766154666766567887899998649985771241223467777
Q ss_pred HHHHCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEE
Q ss_conf 32100145200110038877992375499942204468886530799149994475469977013310554367749991
Q 003617 723 MARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMS 802 (807)
Q Consensus 723 m~rgtf~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA 802 (807)
|+||||+|+|+.|+|++ .+|++|+|+|+|+.+++|+++++|+++|+++|||||+|||||||||||||+++++|||||||
T Consensus 718 m~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA 796 (888)
T 2b3y_A 718 MARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLA 796 (888)
T ss_dssp HHHTTTCCTTCEETTTT-EECSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEE
T ss_pred HHHHCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEE
T ss_conf 75412233433232344-45872243699862662656898875498569989877788753789999999819329997
Q ss_pred CCCCC
Q ss_conf 27899
Q 003617 803 DFCSG 807 (807)
Q Consensus 803 ~Sfa~ 807 (807)
+||++
T Consensus 797 ~SFar 801 (888)
T 2b3y_A 797 ESYER 801 (888)
T ss_dssp SCBCH
T ss_pred HHHHH
T ss_conf 15989
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=1.00 E-value=1 Score=1376.26 Aligned_cols=618 Identities=31% Similarity=0.464 Sum_probs=545.6
Q ss_pred CCHHHHHHHHHHHCCCC------C-CEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 63999999982114999------9-4069630244574158627699999999999999199987437888879993699
Q 003617 59 VKSKDVEKIIDWETTSP------K-QVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHS 131 (807)
Q Consensus 59 v~~~~iekIl~~~~~~~------~-~~ei~~~pdrvl~qD~TG~~ai~dlaamrd~~~~~G~dp~~inp~~pv~lviDHs 131 (807)
-++|+.|||++.|.... . +.+|.++|||+++||+||++++++|++ +|.++ +..|.++++||+
T Consensus 33 ~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-------~G~~~----v~~P~~~~~DH~ 101 (753)
T 1c96_A 33 RPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-------SGLPK----VAVPSTIHCDHL 101 (753)
T ss_dssp SCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-------HTCSS----CSSCEEEECCSS
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCCCHHHHHHHHH-------HCCCC----CCCCCCEECCCC
T ss_conf 8978999999997578544442699978999833898852530899999998-------09998----889876434898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCCCEEEECCCCCCCCC-EEEECCC
Q ss_conf 875843416799850399999943311144220122466202089994330000221110554179833468-3773289
Q 003617 132 VQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPD-SVVGTDS 210 (807)
Q Consensus 132 v~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~GI~HQv~lE~la~vv~~~~G~~~Pd-tivGtDS 210 (807)
+|++..++. ++..++.+|.|+|+||+|++++| |++|+|||+||||||++|+ +++|+ ++|||||
T Consensus 102 v~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E~----------~~~Pg~~ivGtDS 165 (753)
T 1c96_A 102 IEAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILEN----------YAYPGVLLIGTDS 165 (753)
T ss_dssp CCBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHHH----------TCCTTCEEEESST
T ss_pred CCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC-CCEEECCCCCEECEEECCC----------CCCCCCEEECCCC
T ss_conf 777777664-----35554365799999999999977-9779899988507370303----------1379967865888
Q ss_pred CCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCCEEEEEEEEECCCCCCHHCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 87556864403412678999999928916844581899999702699999330899999999964821179999648666
Q 003617 211 HTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVVGMFVEFYGEGMS 290 (807)
Q Consensus 211 HT~~~galG~la~GVGg~ea~aamlg~~~~l~vPevVgV~L~G~L~~gVtakDivL~i~~~Lr~~G~vgk~VEF~G~Gv~ 290 (807)
||||+||||+|||||||+|++++|+||+|||++||+|+|+|+|+|++|||||||||+|+++|+++|++||+|||+|||++
T Consensus 166 HT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~ 245 (753)
T 1c96_A 166 HTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVD 245 (753)
T ss_dssp TGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGG
T ss_pred CCCCCCHHHHHEECCCHHHHHHHHHCCEEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77765622431445678999999828865402786899999611698966789999998885328841489999777315
Q ss_pred CCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 67810013230247223840411128767999996609993058999999998000024899999982027999986883
Q 003617 291 ELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV 370 (807)
Q Consensus 291 ~Lsv~dRaTIaNMa~E~GAt~~~Fp~De~T~~YL~~tgr~~~~~~~v~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~i 370 (807)
+||+++|||||||++|+|||+|+||+|++|++||+.++|++ .++++++|++ +| .+|++|+|+++++||||+|
T Consensus 246 ~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~l----~~D~~A~Yd~~ieiDls~l 317 (753)
T 1c96_A 246 SISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---HL----VPDPGCHYDQVIEINLSEL 317 (753)
T ss_dssp GSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---GS----SCCTTCCCSEEEEEEGGGC
T ss_pred CCCCCHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHCCCCH-HHHHHHHHHH---HC----CCCCCCCEEEEEEEECCCC
T ss_conf 47710023354046653852030057489999998659837-8899999986---43----5899995569999982210
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 01003899999732377551106875204346777678500113330110289754347877899972057899995699
Q 003617 371 VPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVM 450 (807)
Q Consensus 371 eP~VAgP~~P~~~~~lse~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~ 450 (807)
||+||+|++|||+++|+++++.+.+ ++.+ -+|++|||||||||||+|++
T Consensus 318 eP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~-----~~Vd~~~IGSCTN~~~~Dl~ 366 (753)
T 1c96_A 318 KPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP-----LDIRVGLIGSCTNSSYEDMG 366 (753)
T ss_dssp CCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-----CBEEEEEEBTTTBCSHHHHH
T ss_pred CEEECCCCCCCCEEEHHHHHHHHHH--------------------------CCCC-----CCEEEEEEECCCCCCHHHHH
T ss_conf 0242279997554186885456763--------------------------5886-----41579998157899879999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCE
Q ss_conf 99999999998569944885219995384999999998691899984593993467533448989997578864204971
Q 003617 451 LGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDI 530 (807)
Q Consensus 451 ~aA~lLa~~A~~~G~kv~p~Vk~~vaPgS~~V~~~l~~~Gll~~L~~aG~~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~ 530 (807)
+|+.++|+|+++|++. .||++|+|||++|++||+++||+++|+++||.|.+|||++||||+++.. + ..++.
T Consensus 367 -~AA~ilkga~~~~v~~--~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~CiG~~~~~~--~----~~~~~ 437 (753)
T 1c96_A 367 -RSAAVAKQALAHGLKC--KSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKD--I----KKGEK 437 (753)
T ss_dssp -HHHHHHHHHHTTTCCC--SSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSSCGGGGTCBCCCS--S----CTTCC
T ss_pred -HHHHHHCCHHHCCCCC--CCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCEEEECCCCCCC--C----CCCCC
T ss_conf -9999960576569998--8508996998999999998584999997696995688506236888755--5----66776
Q ss_pred EEEEEECCCCCCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 89886115777789979-98886173498999999870854457877875348999512213589990667876420468
Q 003617 531 VAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVL 609 (807)
Q Consensus 531 ~~~~V~S~NRNF~GR~g-~~~~~~YLaSP~lVaA~AlaG~I~~d~~~~plg~~~~g~~v~l~diwP~~~Ei~~~~~~~v~ 609 (807)
.++|||+||||+|||| ++.+.+|||||++||||||+|+|+||+.+||| .+++|++|||+| |+.+|+++
T Consensus 438 -~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g~~v~l~~--p~~~e~~~------- 506 (753)
T 1c96_A 438 -NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDGKKFKLEA--PDADELPR------- 506 (753)
T ss_dssp -EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSCCCCCCCC--CCCCSSCS-------
T ss_pred -CEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCC-CCCCCCEEEECC--CCCCHHHH-------
T ss_conf -2278605678444557899872365589999999973976468000535-577897033149--96200046-------
Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 3013200122357996665546799-873113999841118999887988999988754738998639986657404699
Q 003617 610 PDMFKATYEAITKGNPMWNQLSVPS-GTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPAG 688 (807)
Q Consensus 610 ~~~f~~~y~~~~~~~~~w~~l~~~~-~~~~~wd~~styi~~pp~f~~~~~~~~~~~~~~~~~~l~~~gd~itTDhIsPag 688 (807)
.+|. .+++.|+.++.+. +..|.|+++|||++.||||++ ++..++.++++|+++||+||||||||||
T Consensus 507 -~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~~~~~~~vL~klgd~iTTDhIsPAG 573 (753)
T 1c96_A 507 -AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGKDLEDLQILIKVKGKCTTDHISAAG 573 (753)
T ss_dssp -SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSSCEEEEEEEEEBCSCCBHHHHBCCG
T ss_pred -HHCC-------CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf -5426-------78633326899887612752898755567998888-----8765533543787326875556605664
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCC--CCCCC---CEEECCCCCCCCHHHHHHH
Q ss_conf 889998788898760889534554567678545532100145200110038--87799---2375499942204468886
Q 003617 689 SIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLN--GEVGP---KTIHIPTGEKLSVFDAAMR 763 (807)
Q Consensus 689 ~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~--~~~g~---~t~~~p~g~~~~i~~~a~~ 763 (807)
+||+++ |+|+|++ .|.|.. +.+++ +++|+|+|+.+++||++++
T Consensus 574 ---------~~L~~r----------------------g~f~ni~-~n~l~~~~~~~~g~~~~~~~~~~~~~~~~~d~a~~ 621 (753)
T 1c96_A 574 ---------PWLKFR----------------------GHLDNIS-NNLLIGAINIENRKANSVRNAVTQEFGPVPDTARY 621 (753)
T ss_dssp ---------GGGGGT----------------------BCHHHHG-GGBTTTSBBTTTCCBSCEECTTTCCEECHHHHHHH
T ss_pred ---------HHHCCC----------------------CCHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf ---------343016----------------------6554411-33220664345787661477358741365779999
Q ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 53079914999447546997701331055436774999127899
Q 003617 764 YKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 764 y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
|+++++++|||||+|||||||||||||++++|||+||||+||++
T Consensus 622 y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfar 665 (753)
T 1c96_A 622 YKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFAR 665 (753)
T ss_dssp HHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCH
T ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 99737973999557678875267777657874756998643899
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=862.32 Aligned_cols=454 Identities=22% Similarity=0.313 Sum_probs=386.6
Q ss_pred CCCCHHHHHHHHHHCCCCCC---------------CCCCHHHHHHHHHHHCCC---CCCEEEEEECCEEEEECCCCHHHH
Q ss_conf 99981346777320024585---------------566399999998211499---994069630244574158627699
Q 003617 37 DKLPYSIKILLESAIRNCDE---------------FQVKSKDVEKIIDWETTS---PKQVEIPFKPARVLLQDFTGVPAV 98 (807)
Q Consensus 37 ~~LP~sirvLlEn~lR~~d~---------------~~v~~~~iekIl~~~~~~---~~~~ei~~~pdrvl~qD~TG~~ai 98 (807)
..+||.++-.|-.-.|..-+ ...++|++|||++++.+. .++.+|.++||||++||+||+|+
T Consensus 343 Gli~~i~~r~l~~~a~~~l~~~~~~~f~~~~~~~~~~mg~TlaEKIl~~~~g~~~v~~G~~v~~~~D~v~~qD~Tg~~~- 421 (865)
T 1l5j_A 343 GRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMT- 421 (865)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCSCCCHHHHHHHHTTTSSCCCTTCEECCBCSEEEECTTTHHHH-
T ss_pred CHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCHHH-
T ss_conf 9666530003799999875899066404877877789886699999999738886589988999844999863575899-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 99999999999919998743788887999369987584341679985039999994331114422012246620208999
Q 003617 99 VDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMEFEFRRNKERFAFLKWGSNAFHNMLVVPPGS 178 (807)
Q Consensus 99 ~dlaamrd~~~~~G~dp~~inp~~pv~lviDHsv~~~~~~~~~a~~~n~~~e~~rn~ery~flkw~~~~f~~~~v~ppG~ 178 (807)
|++++++|.+ +++++. +..++||.++.+. +...+++||.++|.+.+|+ .++|||+
T Consensus 422 ------~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~ 476 (865)
T 1l5j_A 422 ------RDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGD 476 (865)
T ss_dssp ------HHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTS
T ss_pred ------HHHHHHCCCC--CCCCCE-EEEECCCCCCCCC---------HHHHHHHHHHHHHHHHCCC-------EEECCCC
T ss_conf ------9999972897--578874-9997787776789---------7889999899999997397-------6747998
Q ss_pred CEEECCCCCCCCEEEECCCCCCCCCE-EEECCCCCCCCCCCCCEEECCCHHHHHHHHCCCCEEEECCCEEEEEEEEECCC
Q ss_conf 43300002211105541798334683-77328987556864403412678999999928916844581899999702699
Q 003617 179 GIVHQVNLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRD 257 (807)
Q Consensus 179 GI~HQv~lE~la~vv~~~~G~~~Pdt-ivGtDSHT~~~galG~la~GVGg~ea~aamlg~~~~l~vPevVgV~L~G~L~~ 257 (807)
|||||++.| +++|++ +|||||||||+||+| +|.|+.+++.+|++|++|+++||+|+|+|+|+|++
T Consensus 477 GI~Hq~l~~-----------~~~PG~~ivGtDSHT~~~~Glg---~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~ 542 (865)
T 1l5j_A 477 GVIHSWLNR-----------MLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQP 542 (865)
T ss_dssp BCHHHHHGG-----------GCCTTCEEEESSTTCCCSSSEE---CCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCT
T ss_pred CEEEEEECC-----------CCCCCCEEEECCCCCCCCCCCE---ECCCHHHHHHHHHCCCEEECCCCEEEEEEEEECCC
T ss_conf 521034135-----------0204636982798866223532---07627999999970966504797789999702798
Q ss_pred CCCHHCHHHHHHHHHHHC------------CCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC-HHHHHHH
Q ss_conf 999330899999999964------------821179999648666678100132302472238404111287-6799999
Q 003617 258 GVTATDLVLTVTQMLRKH------------GVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVD-HVTLQYL 324 (807)
Q Consensus 258 gVtakDivL~i~~~Lr~~------------G~vgk~VEF~G~Gv~~Lsv~dRaTIaNMa~E~GAt~~~Fp~D-e~T~~YL 324 (807)
|||+|||||+|++.++++ +++||+||| +|+++||+++|+|||||++|+|||+|+||+| +.|++||
T Consensus 543 gVtaKDvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL 620 (865)
T 1l5j_A 543 GITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYL 620 (865)
T ss_dssp TCCHHHHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCHHHHHHHHHCCHHCCCEEEEEECCHHHHHHHH
T ss_conf 987288999999998752533423347623300489998--251017855565576410310872699937778999999
Q ss_pred HH----------CCCC-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC-EEECCCCCCCCCCCCCCC
Q ss_conf 66----------0999-----3058999999998000024899999982027999986883-010038999997323775
Q 003617 325 KL----------TGRS-----DDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEV-VPCVSGPKRPHDRVPLNE 388 (807)
Q Consensus 325 ~~----------tgr~-----~~~~~~v~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~i-eP~VAgP~~P~~~~~lse 388 (807)
+. +||+ +++++.++.|++++++| .+|++|+|+++++||||+| ||+||+|++|||++++++
T Consensus 621 ~~~~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse 696 (865)
T 1l5j_A 621 NSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSA 696 (865)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGG
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEE----CCCCCCCEEEEEEEECCCCCCCEECCCCCHHHCCCHHH
T ss_conf 86334333331048752011789999999987416500----36899847899999711377887638998475466255
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 51106875204346777678500113330110289754347877899972057899995699999999999985699448
Q 003617 389 MKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLEVK 468 (807)
Q Consensus 389 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLa~~A~~~G~kv~ 468 (807)
+++. +|+++|||||||+ ++|++.||.+| ||++++
T Consensus 697 ~~~~---------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~ 730 (865)
T 1l5j_A 697 VQGE---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQ 730 (865)
T ss_dssp TTTC---------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSC
T ss_pred HCCC---------------------------------------CCCEEEEECCCCC-HHHHHHHHHHH------CCCCCC
T ss_conf 3303---------------------------------------1016999358899-89999999997------276668
Q ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 85219995384999999998691899984593993467533448989997578864204971898861157777899799
Q 003617 469 PWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHP 548 (807)
Q Consensus 469 p~Vk~~vaPgS~~V~~~l~~~Gll~~L~~aG~~v~~~GCg~CiG~~g~l~~~~~~~i~~~~~~~~~V~S~NRNF~GR~g~ 548 (807)
+.|+++|+|||++|+.||+++|++++|+++||+|.+||||+||||++.+. ++++ ++||+||||+||||+
T Consensus 731 ~~v~~~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~~--------~ge~---~isTsNRNF~GR~G~ 799 (865)
T 1l5j_A 731 LPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA--------DGAT---VVSTSTRNFPNRLGT 799 (865)
T ss_dssp CSSEEEECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCCC--------TTCE---EEESSSCCCTTSSST
T ss_pred CCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCCCCCCCCCCCC--------CCCE---EEECCCCCCCCCCCC
T ss_conf 99897997989999999998584999997597893785502658388679--------9998---996688687777788
Q ss_pred CCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCHHHHCCC
Q ss_conf 8886173498999999870854457877875348999512213589990667876420468301320012
Q 003617 549 LTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 618 (807)
Q Consensus 549 ~~~~~YLaSP~lVaA~AlaG~I~~d~~~~plg~~~~g~~v~l~diwP~~~Ei~~~~~~~v~~~~f~~~y~ 618 (807)
. ..+|||||++||||||+|+| |+.+|+.+++...++|+...-+|.
T Consensus 800 ~-~~~yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~~~~~~~~ 844 (865)
T 1l5j_A 800 G-ANVFLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTAVDTYRYL 844 (865)
T ss_dssp T-CEEEECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTHHHHTCCC
T ss_pred C-CCEEECCHHHHHHHHHCCCC------------------------CCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 7-50677799999999967868------------------------988999999986228744444267
No 4
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=1.00 E-value=1 Score=252.23 Aligned_cols=209 Identities=19% Similarity=0.211 Sum_probs=160.3
Q ss_pred CCCCCCCCCC------CCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCHHHHH----HHHHC-C
Q ss_conf 7778997998------886173498999999870854457877875348999512-2135899906678----76420-4
Q 003617 540 RNFEGRVHPL------TRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKI-FLRDIWPSSEEVA----HVVQK-S 607 (807)
Q Consensus 540 RNF~GR~g~~------~~~~YLaSP~lVaA~AlaG~I~~d~~~~plg~~~~g~~v-~l~diwP~~~Ei~----~~~~~-~ 607 (807)
.-|.+|+.|. ++++||+|+ |.+++..+.|+.+..+++||+...|.+| +|.||| +++|+. +.+.. .
T Consensus 47 ~~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~ 123 (865)
T 1l5j_A 47 DLLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTL 123 (865)
T ss_dssp HHHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCC
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 9997077989980788899999998--71745478649899987510489997319999884-75356899999987620
Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 68301320012235799666554679987311399984111899988798899998875473899863998665740469
Q 003617 608 VLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDSITTDHISPA 687 (807)
Q Consensus 608 v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~styi~~pp~f~~~~~~~~~~~~~~~~~~l~~~gd~itTDhIsPa 687 (807)
+..++|.+.|+..+.||+.|+.+ ++.|...+-+..+|+. ......+++ +++|||+|||||||
T Consensus 124 l~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~-----------~~~i~g~v~-~~~~nIdTD~IiPa 185 (865)
T 1l5j_A 124 LMFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPAL-----------AEKLTVTVF-KVTGETNTDDLSPA 185 (865)
T ss_dssp TTTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCC-----------CSCEEEEEE-EEEEEEEHHHHSCG
T ss_pred CCHHHHHHHHHHHHCCCHHHHHH------HHHCCCCCCCCCCCCC-----------CCEEEEEEE-ECCCCCCHHCCCCH
T ss_conf 20988999999986138989999------8731143200258887-----------853899999-65897754030766
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHC
Q ss_conf 98899987888987608895345545676785455321001452001100388779923754999422044688865307
Q 003617 688 GSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVFDAAMRYKNE 767 (807)
Q Consensus 688 g~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~~t~~~p~g~~~~i~~~a~~y~~~ 767 (807)
+ ||..+ ...+.+.++.|.+.| ..+-+ .|. ++..++ ...++++..
T Consensus 186 ~----------~l~~~--------------~d~~~~a~~lf~~~r--~~~~p----~f~-----~~~~~~-~~i~~~~~~ 229 (865)
T 1l5j_A 186 P----------DAWSR--------------PDIPLHALAMLKNAR--EGIEP----DQP-----GVVGPI-KQIEALQQK 229 (865)
T ss_dssp G----------GGGGT--------------TSHHHHGGGTTCSCB--TTBCC----SBT-----TTBCSH-HHHHHHHTT
T ss_pred H----------HHHCC--------------CCHHHHHHHHHHCCC--CCCCC----CCC-----CCCCCH-HHHHHHHCC
T ss_conf 5----------63218--------------997999999721123--58983----212-----335604-444565349
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHCC-------------CCCCCCEEEECCCCC
Q ss_conf 9914999447546997701331055-------------436774999127899
Q 003617 768 GHDTVILAGAEYGSGSSRDWAAKGP-------------MLLVNPCIMSDFCSG 807 (807)
Q Consensus 768 ~~~~iivaG~nyG~GSSRe~Aa~~~-------------~~lGv~aViA~Sfa~ 807 (807)
|.+ |+|+|+|||||||||||+|++ +.+| +||||+|||+
T Consensus 230 G~~-IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~ 280 (865)
T 1l5j_A 230 GFP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAP 280 (865)
T ss_dssp SSC-EEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECH
T ss_pred CCE-EEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCHHHCC-CEEEECHHHH
T ss_conf 987-99979835268645889999998715777687464428-8599646989
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=211.60 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 899988798899998875--473899863998665740469988999878889876088953455456767854553210
Q 003617 649 EPPYFKDMTMSPPGPHGV--KGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARG 726 (807)
Q Consensus 649 ~pp~f~~~~~~~~~~~~~--~~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rg 726 (807)
-.|||+++.......+.+ ..++++.+.||||||||||||. ||+. +.+.+ |.++
T Consensus 4 ~~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiPa~----------~L~~--~~~~~-------------l~~~ 58 (213)
T 2hcu_A 4 MASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILPKQ----------FLKL--IDKKG-------------FGKY 58 (213)
T ss_dssp ---------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSCGG----------GGGS--CTTSC-------------CGGG
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHCCHHH----------HHCC--CCHHH-------------HHHH
T ss_conf 566558730155568881389999999289877842226698----------8673--89878-------------8888
Q ss_pred CCCCCCHHHHCCCCCCCC-CEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCC
Q ss_conf 014520011003887799-2375499942204468886530799149994475469977013310554367749991278
Q 003617 727 TFANIRLVNKLLNGEVGP-KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFC 805 (807)
Q Consensus 727 tf~n~r~~n~~~~~~~g~-~t~~~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sf 805 (807)
+|+++|+.|+ +|.+++ |+.+.+ +|+. +.|||||+|||||||||||+|+++++||+||||+||
T Consensus 59 ~f~~~r~~~~--~g~~~p~f~~~~~------------~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SF 121 (213)
T 2hcu_A 59 LMYEWRYLDN--NYTENPDFIFNQP------------EYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSF 121 (213)
T ss_dssp TTHHHHBSST--TCCBCTTSGGGSG------------GGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCB
T ss_pred HHHCCCCCCC--CCCCCCCCCCCCH------------HHCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHH
T ss_conf 7533402255--8887987011513------------3058---728993588899977799999999848758997559
Q ss_pred CC
Q ss_conf 99
Q 003617 806 SG 807 (807)
Q Consensus 806 a~ 807 (807)
|+
T Consensus 122 Ar 123 (213)
T 2hcu_A 122 GD 123 (213)
T ss_dssp CH
T ss_pred HH
T ss_conf 99
No 6
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=178.89 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCEE
Q ss_conf 73899863998665740469988999878889876088953455456767854553210014520011003887799237
Q 003617 668 GAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTI 747 (807)
Q Consensus 668 ~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~~t~ 747 (807)
.++ .+++|||||||||+||. ||. |.|.+.+.+++|.+.|
T Consensus 4 ~g~-v~~~~dnIdTD~IiPa~----------~l~---------------~~~~~~l~~~~f~~~~--------------- 42 (170)
T 2pkp_A 4 KGR-AHKFGDDVDTDAIIPGP----------YLR---------------TTDPYELASHCMAGID--------------- 42 (170)
T ss_dssp EEE-EEECCSCCBHHHHSCGG----------GGS---------------CCCHHHHHTTTTTTTC---------------
T ss_pred EEE-EEECCCCCCHHHCCHHH----------HHC---------------CCCHHHHHHHHCCCCC---------------
T ss_conf 999-99779988855447277----------758---------------7998999997566678---------------
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 549994220446888653079914999447546997701331055436774999127899
Q 003617 748 HIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 748 ~~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
++++.++++ .+|||||+|||||||||||||+++++|++||||+||++
T Consensus 43 ----------p~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFar 89 (170)
T 2pkp_A 43 ----------ENFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFAR 89 (170)
T ss_dssp ----------TTHHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCH
T ss_pred ----------CCHHHHCCC---CCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf ----------745773788---87899368778987889999999985873999733889
No 7
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=1.00 E-value=1 Score=177.56 Aligned_cols=85 Identities=29% Similarity=0.440 Sum_probs=71.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf 38998639986657404699889998788898760889534554567678545532100145200110038877992375
Q 003617 669 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIH 748 (807)
Q Consensus 669 ~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~~t~~ 748 (807)
++ ++++|||||||||+||. ||. |+|.+.+.+.+|.+.+
T Consensus 5 g~-~~~~~dnidTD~IiPa~----------~l~---------------~~~~~~l~~~~f~~~~---------------- 42 (163)
T 1v7l_A 5 GK-VWKFGDDISTDEITPGR----------YNL---------------TKDPKELAKIAFIEVR---------------- 42 (163)
T ss_dssp EE-EEECCSCCBHHHHSCTT----------SCC---------------CSCHHHHHHHTTTTTC----------------
T ss_pred EE-EEECCCCCCHHCCCHHH----------HHC---------------CCCHHHHHHHHCCCCC----------------
T ss_conf 99-99839988840254377----------738---------------7998899997677668----------------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 49994220446888653079914999447546997701331055436774999127899
Q 003617 749 IPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 749 ~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
++++.++++. +|||||+|||||||||||||+++++||+||||+||++
T Consensus 43 ---------p~f~~~~~~g---~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFar 89 (163)
T 1v7l_A 43 ---------PDFARNVRPG---DVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGR 89 (163)
T ss_dssp ---------TTHHHHCCTT---CEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCH
T ss_pred ---------CCHHHHCCCC---CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
T ss_conf ---------6547737888---7899558678988889999999985987999713889
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=175.95 Aligned_cols=88 Identities=26% Similarity=0.401 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCC
Q ss_conf 54738998639986657404699889998788898760889534554567678545532100145200110038877992
Q 003617 666 VKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPK 745 (807)
Q Consensus 666 ~~~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~~ 745 (807)
+..++++ ++||||+||+|+||. ||+. .|.+.+.+..|.+++
T Consensus 4 ~i~g~v~-~~gdnIdTD~IiPa~----------~l~~---------------~~~~~l~~~~f~~~~------------- 44 (176)
T 3vba_A 4 IIKGRVW-KFGNNVDTDAILPAR----------YLVY---------------TKPEELAQFVMTGAD------------- 44 (176)
T ss_dssp EEEEEEE-ECCSSCBHHHHSCGG----------GTTC---------------CSHHHHGGGTTTTTC-------------
T ss_pred EEEEEEE-EECCCCCHHHCCCHH----------HHCC---------------CCHHHHHHHHCCCCC-------------
T ss_conf 6888999-908976566438087----------7086---------------998999975176778-------------
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 37549994220446888653079914999447546997701331055436774999127899
Q 003617 746 TIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 746 t~~~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
++++.+|++. .|||||+||||||||||||++++.+|++||||+|||+
T Consensus 45 ------------p~F~~~~~~g---~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~ 91 (176)
T 3vba_A 45 ------------PDFPKKVKPG---DIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFAR 91 (176)
T ss_dssp ------------TTHHHHCCTT---CEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCH
T ss_pred ------------CCHHHHCCCC---CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHH
T ss_conf ------------3178754788---8899678762885678999999996974999652778
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=175.92 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCC
Q ss_conf 75473899863998665740469988999878889876088953455456767854553210014520011003887799
Q 003617 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (807)
Q Consensus 665 ~~~~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~ 744 (807)
....++++.+-+|||+||+|+|+. ||+.. .+ +.+.++.|.++|+... |.+.
T Consensus 8 ~~~~G~a~~l~~dnIDTD~IIP~~----------fL~~~--~~-------------~~lg~~~f~~~R~~~~---g~~~- 58 (203)
T 3q3w_A 8 IIHKGIACPLEYANIDTDQIIPKQ----------FLLAV--SK-------------QGFGKHLFHDLRYLDD---KESV- 58 (203)
T ss_dssp SEEEEEEEEECCSSCBHHHHSCGG----------GCBSS--CS-------------SCSGGGTTHHHHBSSS---SSCS-
T ss_pred EEEEEEEEECCCCCCCHHHCCHHH----------HCCCC--CH-------------HHHHHHHHHHHHCCCC---CCCC-
T ss_conf 799999998888656840155097----------74868--98-------------8998864343221356---7877-
Q ss_pred CEEECCCCCCCCHHHHHH---HHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 237549994220446888---653079914999447546997701331055436774999127899
Q 003617 745 KTIHIPTGEKLSVFDAAM---RYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 745 ~t~~~p~g~~~~i~~~a~---~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
+-++++. +|+.. .|||||+|||||||||||+|+++.+||+||||+|||+
T Consensus 59 -----------~~pdF~~n~~~~~~~---~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~ 110 (203)
T 3q3w_A 59 -----------LNMDFNLNKKEYQNS---SILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFAD 110 (203)
T ss_dssp -----------BCTTSGGGSGGGTTE---EEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCH
T ss_pred -----------CCCCHHHCCCCCCCC---CEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCHHH
T ss_conf -----------898811265335898---8899698778887678999999982952999782899
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=1.00 E-value=1 Score=172.39 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=75.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCC
Q ss_conf 75473899863998665740469988999878889876088953455456767854553210014520011003887799
Q 003617 665 GVKGAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGP 744 (807)
Q Consensus 665 ~~~~~~~l~~~gd~itTDhIsPag~i~~~s~a~~~L~~~g~~~~~fn~yg~rrgn~evm~rgtf~n~r~~n~~~~~~~g~ 744 (807)
....++++.+.||||+||+|+|++ ||+.. . .+.|.++.|.+.|... .
T Consensus 8 ~~~~G~~~~l~~dnIdTD~IiPa~----------~L~~~--~-------------~~~l~~~~f~~~R~~p--------~ 54 (171)
T 3h5j_A 8 HTHSGIGVPLRRSNVDTDQIIPAV----------FLKRV--T-------------RTGFEDGLFAGWRSDP--------A 54 (171)
T ss_dssp SEEEEEEEEECCCSCCHHHHSCGG----------GTTCC--S-------------CSCCGGGTTTTGGGST--------T
T ss_pred EEEEEEEEECCCCCCCCCCCCCHH----------HCCCC--C-------------HHHHHHHHHCCCCCCC--------C
T ss_conf 799999998668766830177465----------54879--9-------------8999887540676796--------8
Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 237549994220446888653079914999447546997701331055436774999127899
Q 003617 745 KTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLVNPCIMSDFCSG 807 (807)
Q Consensus 745 ~t~~~p~g~~~~i~~~a~~y~~~~~~~iivaG~nyG~GSSRe~Aa~~~~~lGv~aViA~Sfa~ 807 (807)
|..+. .+|+.. .|||||+|||||||||||+|+++.+|++||||+|||+
T Consensus 55 F~~~~------------~~~~~~---~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~ 102 (171)
T 3h5j_A 55 FVLNL------------SPFDRG---SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGD 102 (171)
T ss_dssp SGGGS------------TTGGGC---CEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCH
T ss_pred CCCCC------------CCCCCC---CEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 00065------------024798---6899688734886779999999986995999884789
Done!