BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003618
         (807 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
           Containing Protein 7
          Length = 153

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 402 YEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARANKESI 445
           +E     G +   W+ I +  ++++ C+ L ++VW+  A K  I
Sbjct: 31  FETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 74


>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
 pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
            Resolution
          Length = 1661

 Score = 29.6 bits (65), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 481  GLDGCLQHYVLKAKSGCGSRN--NFIPTMPA---LTRCTMGSKFGAFKRKEKLHTAQKRK 535
             +DG    ++++  SGCG +N     PT+ A   L       KFG  KR+E L   +K  
Sbjct: 993  AIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGY 1052

Query: 536  SQ 537
            +Q
Sbjct: 1053 TQ 1054


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,034,801
Number of Sequences: 62578
Number of extensions: 851075
Number of successful extensions: 1804
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 3
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)