BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003618
(807 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72302|CGMA_RHIME Putative cyclic beta-1,2-glucan modification protein OS=Rhizobium
meliloti (strain 1021) GN=cgmA PE=4 SV=2
Length = 639
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 163 HRYV-STGQVESDLLFAANNLLMEIEKDAKAAKDADYSKILSSILNTILDWAGQRLRDYH 221
+RY +T +VE DL A +L + K A D+ L ++DWA +R R+
Sbjct: 437 NRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDS---------LKMLMDWAKERDRETI 487
Query: 222 DIFHDDNIDSLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHD 266
+ D++ L TV S+T ++GI+ E +G K+Q+ H+
Sbjct: 488 IVLFGDHLPPLNTV-----YSSTGYMKGITAERKGPKDQMKAEHE 527
>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans
GN=hum-6 PE=1 SV=1
Length = 2098
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 105/257 (40%), Gaps = 29/257 (11%)
Query: 564 KELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDL 623
KE+ K H + R + G +++ VEAIQ + I +KV F D
Sbjct: 1729 KEISHFLKSRPHPIALDCQNRMQKLAKGGSRKYPPHLVE-VEAIQHKTTQIFHKVFFPDN 1787
Query: 624 SHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISS---TVHDRVRTRVITDIMKASFEGFL 680
+ + + V S++R F ++ + L + SS ++ +++ +V+ F ++
Sbjct: 1788 TD---EAIEVD--SATRARDFCHKIGYRLGLKSSDGFSLFVKIKDKVLAVPESEFFFDYV 1842
Query: 681 LVLLAGGPSRAFTHQDSDIIEEDFK-FLCDLFWSN---GDGLPADLIDKFSTSVRSILPL 736
L + T +D+ +I +++ + W N G AD+I + + L
Sbjct: 1843 RSLSDWVHTNHATQKDATMIPINYQVYFMRKLWYNFVAGADPQADIIFHYHQESQKYLLG 1902
Query: 737 YHNDTESLIEEFKRLTLESYGSSAK----SRLP------LPPTS------GQWNPTEPNT 780
YH T++ + E L L S K +++P +P S +W T N
Sbjct: 1903 YHKTTKNDVIELAALILRSMTKDGKNAPLAQIPQLLDEIIPKDSLKMYSASEWRKTISNA 1962
Query: 781 VLRVLCYRSDETAVKFL 797
R+ +SD+ ++FL
Sbjct: 1963 YARIEHLKSDQAKIEFL 1979
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4
PE=1 SV=2
Length = 1304
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%)
Query: 372 KLEKNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNL 431
+L + L E S+ S G S + PP E E L + +NI +D L R+
Sbjct: 900 RLARALPTSKAEGSLHSSPAGPSSSKGQPPAEEEEGERALREKAVNIPLDPLPGHPLRDP 959
Query: 432 QQEVWNARANKESIAPSAVEVLRTIDETMEAFFMLPIPMHSV 473
+ ++ K+ + S RT+ E LPIP V
Sbjct: 960 RSQLQQFSHIKKDVTLSKPSFARTVLWNPEDLIPLPIPKQDV 1001
>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae
GN=hum-6 PE=3 SV=1
Length = 2099
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 104/258 (40%), Gaps = 29/258 (11%)
Query: 564 KELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDL 623
KE+ K H + R + G +++ VEAIQ + I +KV F D
Sbjct: 1730 KEISHFLKSRPHPIALDCQNRMQKLAKGGSRKYPPHLVE-VEAIQHKTTQIFHKVFFPDK 1788
Query: 624 SHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISS---TVHDRVRTRVITDIMKASFEGFL 680
+ + + V S++R F ++ + L + SS ++ +++ +V+ F ++
Sbjct: 1789 TD---EAIEVD--SATRARDFCHKIGYRLGLKSSDGFSLFVKIKDKVLAVPETEFFFDYV 1843
Query: 681 LVLLAGGPSRAFTHQDSDIIEEDFK-FLCDLFWSN---GDGLPADLIDKFSTSVRSILPL 736
L + +DS +I +++ + W N G AD+I + + L
Sbjct: 1844 RSLSDWVHTNHAMQKDSTMIPINYQVYFMRKLWFNFVPGADSQADIIFHYHQESQKYLLG 1903
Query: 737 YHNDTESLIEEFKRLTLESYGSSAK----SRLP------LPPTS------GQWNPTEPNT 780
YH T++ + E L L + K +++P +P S +W T N
Sbjct: 1904 YHKTTKNDVIELAALILRAMTKEGKNAPLAQIPQLLDDIVPKDSLKMCSASEWRKTISNA 1963
Query: 781 VLRVLCYRSDETAVKFLK 798
RV + D+ ++FLK
Sbjct: 1964 YARVEHLKPDQAKIEFLK 1981
>sp|O13683|YDY2_SCHPO Uncharacterized protein C11E3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC11E3.02c PE=4 SV=1
Length = 1237
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 634 GEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMK-------ASFEGFLLVLLAG 686
GE++ +IE + EL Y ++ S + + V +M + E LL ++
Sbjct: 1006 GELTDVQIEAAIYELLDYFDLNFSIIAKHLTKDVFVTVMSYVWDEVVCTTEELLLPPVSV 1065
Query: 687 GP--SRAFTHQDSDIIEEDFKFLCDLFWSNGDG--LPADLIDKFSTSVRSILPLYHNDTE 742
P + + I+ +FL D F++NG+G LP D + +R + Y T+
Sbjct: 1066 KPINRKPLSPAQMAIVYRWLQFLKDYFYANGEGVKLPVLETDHYKELLR-VQEYYDKPTD 1124
Query: 743 SLIEEFKRLTLESYGSS 759
L++E ++ + Y SS
Sbjct: 1125 FLLQECDKIASQLYLSS 1141
>sp|Q8BR07|BICD1_MOUSE Protein bicaudal D homolog 1 OS=Mus musculus GN=Bicd1 PE=1 SV=2
Length = 835
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 8 LQQIKPTDFTSQKEYEAWKKRIFKLLEAGLLMHPHLPLDNTSTDARRLRQIIRGAVERPL 67
LQ++ T +Q EYE K I + E +L++ L DA RL++I +E L
Sbjct: 182 LQKLVSTLKQNQVEYEGLKHEIKRFEEETVLLNSQLE------DAIRLKEIAEHQLEEAL 235
Query: 68 ETGKN-YESMQNLR 80
ET KN E NLR
Sbjct: 236 ETLKNEREQKNNLR 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,999,272
Number of Sequences: 539616
Number of extensions: 12044259
Number of successful extensions: 33632
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 33620
Number of HSP's gapped (non-prelim): 23
length of query: 807
length of database: 191,569,459
effective HSP length: 126
effective length of query: 681
effective length of database: 123,577,843
effective search space: 84156511083
effective search space used: 84156511083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)