Query 003618
Match_columns 807
No_of_seqs 154 out of 182
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05664 DUF810: Protein of un 100.0 5E-169 1E-173 1463.5 53.3 554 1-571 103-677 (677)
2 KOG1011 Neurotransmitter relea 100.0 3.3E-50 7E-55 444.8 29.3 525 132-752 474-1096(1283)
3 KOG1328 Synaptic vesicle prote 99.8 1.3E-16 2.9E-21 181.3 44.2 527 151-748 365-918 (1103)
4 PF10540 Membr_traf_MHD: Munc1 99.8 1.7E-20 3.8E-25 181.5 8.0 110 639-748 2-137 (137)
5 PF06046 Sec6: Exocyst complex 99.0 7.7E-09 1.7E-13 121.5 15.7 438 265-790 79-531 (566)
6 KOG2180 Late Golgi protein sor 97.4 0.52 1.1E-05 56.4 36.5 364 156-576 139-521 (793)
7 PF06292 DUF1041: Domain of Un 97.3 0.00092 2E-08 62.5 7.5 56 300-355 48-105 (106)
8 PF04091 Sec15: Exocyst comple 96.7 0.0077 1.7E-07 66.5 10.1 252 441-740 26-280 (311)
9 KOG3543 Ca2+-dependent activat 96.5 0.1 2.3E-06 60.9 17.0 229 212-471 719-954 (1218)
10 PF04437 RINT1_TIP1: RINT-1 / 96.2 0.19 4.1E-06 58.9 18.1 291 409-743 131-451 (494)
11 KOG2286 Exocyst complex subuni 90.2 54 0.0012 40.2 39.2 370 301-752 232-614 (667)
12 COG5173 SEC6 Exocyst complex s 86.3 82 0.0018 37.7 28.5 284 408-752 373-680 (742)
13 PF15080 DUF4547: Domain of un 75.0 6.6 0.00014 39.5 5.8 97 638-753 70-169 (196)
14 KOG2307 Low density lipoprotei 66.7 1.7E+02 0.0037 35.3 15.4 45 443-487 351-396 (705)
15 PF10474 DUF2451: Protein of u 62.2 52 0.0011 35.2 9.8 156 548-712 3-167 (234)
16 PF14923 CCDC142: Coiled-coil 61.3 12 0.00025 43.7 5.0 103 630-742 275-383 (450)
17 PF08385 DHC_N1: Dynein heavy 53.5 3.2E+02 0.007 32.3 15.6 170 298-493 353-538 (579)
18 PF04100 Vps53_N: Vps53-like, 50.1 4.5E+02 0.0098 30.2 26.2 115 320-436 262-383 (383)
19 PHA00781 hypothetical protein 32.1 61 0.0013 26.8 3.4 39 103-142 11-49 (59)
20 PF12290 DUF3802: Protein of u 29.7 3.5E+02 0.0076 26.0 8.5 85 627-713 21-109 (113)
21 KOG2176 Exocyst complex, subun 28.8 1.3E+03 0.028 29.3 18.0 153 593-750 586-742 (800)
22 PF12854 PPR_1: PPR repeat 28.6 74 0.0016 23.4 3.2 33 103-139 1-33 (34)
23 KOG0433 Isoleucyl-tRNA synthet 27.9 2.7E+02 0.0058 34.8 9.2 46 629-675 750-795 (937)
24 PF04091 Sec15: Exocyst comple 27.5 3.2E+02 0.0068 30.5 9.3 45 421-467 155-200 (311)
25 KOG4032 Uncharacterized conser 22.7 2.7E+02 0.0059 28.9 6.9 90 136-238 17-115 (184)
26 KOG4654 Uncharacterized conser 21.3 4.1E+02 0.0089 27.8 7.8 83 647-731 48-134 (252)
27 PF09201 SRX: SRX; InterPro: 20.4 69 0.0015 31.8 2.1 26 127-152 90-115 (148)
28 PF02212 GED: Dynamin GTPase e 20.2 5.1E+02 0.011 23.3 7.6 61 641-701 6-70 (92)
29 cd01186 INT_SG3_C INT_SG3, DNA 20.1 1.3E+02 0.0028 29.9 4.1 64 600-663 106-170 (180)
No 1
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=100.00 E-value=4.6e-169 Score=1463.50 Aligned_cols=554 Identities=56% Similarity=0.925 Sum_probs=529.6
Q ss_pred CccchHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCChhHHHHHHHHHh-----cccCCCccccchHH
Q 003618 1 MVLPLELLQQIKPTDFTSQKEYEAWKKRIFKLLEAGLLMHPHLPLDNTSTDARRLRQIIRG-----AVERPLETGKNYES 75 (807)
Q Consensus 1 ~~lplell~~~~~sdF~~~~ey~~Wq~Rql~~Le~gL~~hp~~p~~~~~~~~~~lr~~~~~-----~~~~~~~~~~~~e~ 75 (807)
|+|||||||++|+|||+|++||++|||||||+|||||++||++|+|++|++|+|||++|++ ++.+|++||+++|+
T Consensus 103 ~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l~~s~~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~ 182 (677)
T PF05664_consen 103 IVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPLDKSNASAQRLRQIIAKIREDEAEDKPIDTGKNSES 182 (677)
T ss_pred ccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCccccchhHHHHHHHHHhcccccccCCcCccccccHH
Confidence 6899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCCCCccccccCCcCcHHHHHHHHHhhccCCCCcchhhhHHHHHHhHHhhhhhhccchHHHH
Q 003618 76 MQNLRSVVMSLACRS-FDGSISEKCHWAEGFPLNLRIYRILLEACFDVNEPTSVIEEVDEVLELIKKTWEILGVNQMLHN 154 (807)
Q Consensus 76 ~~~l~~~~~~la~r~-~~g~~~e~chWadg~plN~~ly~~LL~~~FD~~de~~v~~E~dE~lel~k~tW~~LGI~~~~Hn 154 (807)
||+||++|++||||+ .+|.++|+||||||||||+||||+||++|||++|||+|+||+||+||+||+||++||||||+||
T Consensus 183 ~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn 262 (677)
T PF05664_consen 183 MRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHN 262 (677)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHH
Confidence 999999999999995 5779999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhcCccchhHHHHHHHHHHHHHHHhh-hhcCcchHH------------HHHHHHHHHHHHHHHhhhhhh
Q 003618 155 LCFGWILFHRYVSTGQVESDLLFAANNLLMEIEKDAK-AAKDADYSK------------ILSSILNTILDWAGQRLRDYH 221 (807)
Q Consensus 155 ~cf~WvlF~q~v~tgq~e~~Ll~~a~~~l~~v~~dak-~~~d~~~~~------------~l~s~l~~i~~W~ekrL~dYH 221 (807)
+||+||||||||+|| |++||++|+++|+||++|+| .++||.|++ +|+|+|++|++|++|||+|||
T Consensus 263 ~cf~WVlF~qyv~tg--e~~LL~~a~~~L~ev~~d~~~~~~~~~y~~sl~~~~~~~~l~ll~s~L~si~~W~ekrL~dYH 340 (677)
T PF05664_consen 263 VCFAWVLFRQYVATG--EPDLLKAAIQQLQEVAKDAKRATKDPLYLKSLRCSVETSDLSLLSSVLSSIQGWAEKRLLDYH 340 (677)
T ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 89999999999999999999 599999998 999999999999999999999
Q ss_pred hhhcCCchhhHhHHHHHHHHHhhhhhcchhhhhccccCccccchhhHHHHHHhhHHHHHHHHHhhhccccccccCCCCCh
Q 003618 222 DIFHDDNIDSLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHDRVDTYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHL 301 (807)
Q Consensus 222 ~~f~~~~~~~me~~~~l~~~~~~il~ed~~~~~~~~~~~~~~~~~~i~~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~ 301 (807)
+||++|+++.||++|+|++.++||++||++.+++++.+. +++++||+||||||++||+|++++.+.+. +.++.
T Consensus 341 ~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~~~~--~~~~~ie~YIrsSi~~Af~~~~~~~~~~~-----~~~~~ 413 (677)
T PF05664_consen 341 DHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRKRSK--VARSRIESYIRSSIKAAFARMASSVDSRS-----DSEPS 413 (677)
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhhhcc--chHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cccch
Confidence 999999998999999999999999999998887655422 78999999999999999999998888776 48899
Q ss_pred HHHHHHHHHHHHHHhhhhccccccchhccchhHHHHHHHHHHHHHHhHHHHHhhhhccChhHHhhcchhHHHHHHHHHHh
Q 003618 302 PVLSILAQDVTELAFDEKTIFSPILKRWHPLAAGVAVATLHSCYGNELRQFVSGITELTPDAIQVLLAADKLEKNLVQIA 381 (807)
Q Consensus 302 ~~L~~LA~~~~~la~~e~~~fsPiL~~~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~~lt~~~~~vl~aAd~LEk~L~~i~ 381 (807)
|+|++||+||+++|.+|+++|||+|++|||+|++|||++||+|||++||+||+++++||+|+++||++||+|||+|++++
T Consensus 414 ~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~ 493 (677)
T PF05664_consen 414 HVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMV 493 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCcHHHHHHHHHHHHH
Q 003618 382 VEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARANKESIAPSAVEVLRTIDETME 461 (807)
Q Consensus 382 ~e~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E~W~P~s~~e~~S~SVVDvFr~i~etvd 461 (807)
+++|+||||+++|+|+||++|+++.+||++||+++++++.+||+||+++|+|+|++++++||+|||||||||+||||
T Consensus 494 ---~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~P~S~~e~hs~SvVEvfri~~eTvd 570 (677)
T PF05664_consen 494 ---SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQEKWNPRSKEERHSPSVVEVFRIFNETVD 570 (677)
T ss_pred ---HhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCcchHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcch-hhhhccccccc-ccccCCCC
Q 003618 462 AFFMLPIPMHSVLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFG-AFKRKEKLHTA-QKRKSQVG 539 (807)
Q Consensus 462 ~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~-~~Kkk~~p~~~-~~~~~~~~ 539 (807)
+||+||||+++.+|++|++||+++||+||++++++||++++|+|++||||||+++++|+ .|||+..+... .++.+..
T Consensus 571 ~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~~~~~~~~~- 649 (677)
T PF05664_consen 571 QFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTNPDERFSSK- 649 (677)
T ss_pred HHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcCccccccccccC-
Confidence 99999999999999999999999999999999999999999999999999999999887 77888765432 2232222
Q ss_pred CCCCCCCCCcccceeecccHHHHHHHHHHHHH
Q 003618 540 TTNGDNSFGVPQLCCRINTFQHIRKELEVLEK 571 (807)
Q Consensus 540 ~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek 571 (807)
.+++++|++|||||||||+++||++|||
T Consensus 650 ----~~~~~~~~lcVrLNtL~yil~qL~~LEK 677 (677)
T PF05664_consen 650 ----INSQFTPRLCVRLNTLEYILSQLDKLEK 677 (677)
T ss_pred ----cccCccCceeeeecHHHHHHHHHHhhcC
Confidence 3588999999999999999999999986
No 2
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-50 Score=444.85 Aligned_cols=525 Identities=18% Similarity=0.304 Sum_probs=392.7
Q ss_pred HHHHHHhHHhhhhhhccch-HHHHHHHHHHhHHHHhhcCccchhHHHHHHHHHHHH-H-HHhhh---hcCcc--------
Q 003618 132 VDEVLELIKKTWEILGVNQ-MLHNLCFGWILFHRYVSTGQVESDLLFAANNLLMEI-E-KDAKA---AKDAD-------- 197 (807)
Q Consensus 132 ~dE~lel~k~tW~~LGI~~-~~Hn~cf~WvlF~q~v~tgq~e~~Ll~~a~~~l~~v-~-~dak~---~~d~~-------- 197 (807)
+.|+.+-.---..+=.|-| |-|-.| |-.+|.+.|- |..+..-++-++-. | .-|.. ..|.+
T Consensus 474 aqeivdefamrygiesiyqamthfac----l~skymcpgv--pavmstllaninayyahttastnvsasdrfaasnfgke 547 (1283)
T KOG1011|consen 474 AQEIVDEFAMRYGIESIYQAMTHFAC----LSSKYMCPGV--PAVMSTLLANINAYYAHTTASTNVSASDRFAASNFGKE 547 (1283)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----HhhcccCCCc--HHHHHHHHHhhhHHhhccccccccCcchhhhhhcccHH
Confidence 4555543333333334444 446666 6678999997 77665554444321 1 11111 11222
Q ss_pred -hHHHHHHHHHHHHHHHHHhhhhhhhhhcCCchhhHhHHHH-------HHHHHhhhhhcchhhhhccccCccccchhhHH
Q 003618 198 -YSKILSSILNTILDWAGQRLRDYHDIFHDDNIDSLETVVS-------LGVLSATILVEGISQEYRGKKNQVDVAHDRVD 269 (807)
Q Consensus 198 -~~~~l~s~l~~i~~W~ekrL~dYH~~f~~~~~~~me~~~~-------l~~~~~~il~ed~~~~~~~~~~~~~~~~~~i~ 269 (807)
++++|...-+|+ .=-|..|..+|+.+.....+.+-| |...--|+. | .. . ..| +..-+.
T Consensus 548 rfvklldqlhnsl----ridls~yrnnfpassperlqdlkstvdlltsitffrmkvq-e-lq-s-ppr------asqvvk 613 (1283)
T KOG1011|consen 548 RFVKLLDQLHNSL----RIDLSAYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQ-E-LQ-S-PPR------ASQVVK 613 (1283)
T ss_pred HHHHHHHHHhhhh----eeeHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H-hc-C-CCh------HHHHHH
Confidence 356776665554 456899999999887654443332 222211111 1 00 0 001 234455
Q ss_pred HHHHhhHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHhhhhccccccchhccc--hhHHHHHHHHHHHHHH
Q 003618 270 TYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHLPVLSILAQDVTELAFDEKTIFSPILKRWHP--LAAGVAVATLHSCYGN 347 (807)
Q Consensus 270 ~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~~~L~~LA~~~~~la~~e~~~fsPiL~~~~p--~a~~vaA~~Lh~~yg~ 347 (807)
.++..-+...|.-+-+++-..-.-+ .....+--.|.--|..++++|+++|+|.|+++++ +.+.++|.+||++|.+
T Consensus 614 dcvkaclnstye~ifnnchelys~s---~~nldfw~klit~ivsiieedknsytp~lnqfpqelnvgk~saevmw~lfaq 690 (1283)
T KOG1011|consen 614 DCVKACLNSTYEYIFNNCHELYSPS---ITNLDFWYKLITLIVSIIEEDKNSYTPALNQFPQELNVGKLSAEVMWSLFAQ 690 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc---ccchhhHHHHHHHHHHHHHhccccCChhhhhChhhhccccchHHHHHHHHHH
Confidence 5555555555555554432221111 1233444456666799999999999999999998 8899999999999999
Q ss_pred hHHHHHhhhhccChhHHhhcchhHHHH-----HHHHHHhhhccccCCCCcccccccCCCc-----chhhHhHHHHHHHHH
Q 003618 348 ELRQFVSGITELTPDAIQVLLAADKLE-----KNLVQIAVEDSVDSEDGGKSIIQEMPPY-----EAEAAIGNLAKSWIN 417 (807)
Q Consensus 348 dLk~~L~~~~~lt~~~~~vl~aAd~LE-----k~L~~i~~e~s~~~~dgg~~~vr~m~Py-----~ie~~~~~~v~~Wi~ 417 (807)
|||+.|+++.+ ...|++||+|+ |||++.|+- +++.| +...||.|||++|++
T Consensus 691 dmk~aleeh~k-----~~~cksadymnl~fkvk~ly~eyv~--------------dlp~~k~~vpeypawf~pfv~qwld 751 (1283)
T KOG1011|consen 691 DMKYALEEHAK-----KKLCKSADYMNLHFKVKWLYNEYVA--------------DLPTYKSSVPEYPAWFEPFVMQWLD 751 (1283)
T ss_pred HHHHHHHHHhh-----hccccCcchhheeeehhhhHHHHHh--------------hchhhhccCCCchHHHHHHHHHHhc
Confidence 99999999987 88999999999 778887653 34444 478999999999999
Q ss_pred HHHHHHHHHHHhhhhc---cccccCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCccc---chhHHHHHHHHHHHHHHHH
Q 003618 418 IRVDRLKEWVCRNLQQ---EVWNARANKESIAPSAVEVLRTIDETMEAFFMLPIPMHS---VLLPELISGLDGCLQHYVL 491 (807)
Q Consensus 418 ~~~~k~~ewv~raiq~---E~W~P~s~~e~~S~SVVDvFr~i~etvd~ff~L~~p~~~---~~l~~L~~gi~~~lq~Y~~ 491 (807)
++++...+++.+|++. |+|+..|++..||+||||||..+|++++++.+|++|++. .+|++|+++|.+++.+|++
T Consensus 752 enee~s~dflrga~e~dkkdgf~qtseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllqyad 831 (1283)
T KOG1011|consen 752 ENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQYAD 831 (1283)
T ss_pred cchHHHHHHHHhHhhcccccCccccchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 789999999999999999999999999999999999755 5699999999999999999
Q ss_pred HHHhccCCCCCCCCCCccccccccCCcchhhhhcccccccccccCCCCCCCCCCCCCcccceeecccHHHHHHHHHHHHH
Q 003618 492 KAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEK 571 (807)
Q Consensus 492 ~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek 571 (807)
.+. +.|..+..+++- .|+.+||.|+++.||+++.+
T Consensus 832 ivs----------------------kdfp~y~~kekl-----------------------pcilmnnvqqlrvqlekmfe 866 (1283)
T KOG1011|consen 832 IVS----------------------KDFPKYCHKEKL-----------------------PCILMNNVQQLRVQLEKMFE 866 (1283)
T ss_pred HHh----------------------hhhhhhhhhccC-----------------------CeeeeccHHHHHHHHHHHHH
Confidence 994 345444443310 29999999999999999999
Q ss_pred HHhhhhccCCCCCC--------CCcchhhhhhhhhh-HHHHHHHHHHHHHHhhhhheeecchhhhhhhcccCCC---Ccc
Q 003618 572 KTVHQLRSSHSTRT--------DNITNGIEKRFELS-AASSVEAIQQLSEAIAYKVIFHDLSHVLWDGLYVGEV---SSS 639 (807)
Q Consensus 572 ~i~~~~~~~~s~~~--------~~~~d~l~~~F~~s-~~~~~~ai~~l~e~ia~rvVF~Dl~~~l~~~LY~g~V---~~~ 639 (807)
.|++.-.+.+.+.. +++.|.++..|..+ +..|.+++.||+++... +-+ .++-...| +++
T Consensus 867 amggkeld~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~q-vkg--------t~~a~~sva~dad~ 937 (1283)
T KOG1011|consen 867 AMGGKELDEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQ-VKG--------TGLAKTSVAQDADA 937 (1283)
T ss_pred HhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhh-hcc--------cccchhhcccchHH
Confidence 99875433322111 45688999999999 89999999999998532 111 12222233 578
Q ss_pred chhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 003618 640 RIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVL------------------------------------ 683 (807)
Q Consensus 640 RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VL------------------------------------ 683 (807)
.++|+|+.||++|..++..|++++.++|++++||.++..|+..+
T Consensus 938 vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm~tmek~ivlppltdqt~~~~l~~~ki~~~t~~tq~~f~aak~l 1017 (1283)
T KOG1011|consen 938 VLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVMNTMEKRIVLPPLTDQTLLKQLPNAKIGDVTKLTQTIFQAAKEL 1017 (1283)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCCcchhHHhccccccccchhhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999996544
Q ss_pred --------hcCCCCCCCCccchHHHHHHHHHHHHhcccCCCCCcHHHHHHh--HHhHhhhccccccChHHHHHHHHHHH
Q 003618 684 --------LAGGPSRAFTHQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKF--STSVRSILPLYHNDTESLIEEFKRLT 752 (807)
Q Consensus 684 --------L~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~GeGLp~~~vek~--~~~v~~vL~L~~~~Td~LIe~f~~~~ 752 (807)
+.....|+++|++|++++-.|+.||+||||+|.||++.++|++ .++++++|+||+|+||+||+.|++.-
T Consensus 1018 ~lsk~k~hmvree~ksltpkqcavld~aldtikq~fhagg~glkktflekspdlqslryalslytqttd~liktfv~sq 1096 (1283)
T KOG1011|consen 1018 NLSKLKDHMVREEEKSLTPKQCAVLDLALDTIKQYFHAGGKGLKKTFLEKSPDLQSLRYALSLYTQTTDQLIKTFVTSQ 1096 (1283)
T ss_pred chhhHHHHHHHHHhccCCccceehhhhhHHHHHHHHhccCcchhhhHhhcCccHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 2245579999999999999999999999999999999999996 79999999999999999999998764
No 3
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-16 Score=181.32 Aligned_cols=527 Identities=18% Similarity=0.224 Sum_probs=338.5
Q ss_pred HHHHHHHHHHhHHHHhhcCccchhHHHHHHHHHHHHHHHhhh-h-cCcchHHHHHHHHHHHHHHHHHhhhhhhhhhcCCc
Q 003618 151 MLHNLCFGWILFHRYVSTGQVESDLLFAANNLLMEIEKDAKA-A-KDADYSKILSSILNTILDWAGQRLRDYHDIFHDDN 228 (807)
Q Consensus 151 ~~Hn~cf~WvlF~q~v~tgq~e~~Ll~~a~~~l~~v~~dak~-~-~d~~~~~~l~s~l~~i~~W~ekrL~dYH~~f~~~~ 228 (807)
.+|-+---|+-|.....|--.++.+|...++- |...=.+ + -+...-..|.-.+++....+-.++..--++|+..|
T Consensus 365 dlhlAm~rw~a~~~~~~s~~ld~s~L~~lL~d---i~~~W~~~~qL~~e~E~~LaDs~s~F~e~~l~~~r~hRd~Fpa~n 441 (1103)
T KOG1328|consen 365 DLHLAMCRWLAFHSMIHSIDLDFSLLYKLLQD---IIDKWQPLTQLDKEEEDMLADSFSSFDEYCLRMMREHRDKFPASN 441 (1103)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH---HHHhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 57877788999999999888888887655443 3322211 1 12333466777788888889889999999999888
Q ss_pred hhhHhHHHHHHHHHhhhhhcchhhhhccccCccccchhhHHHHHHhhHHHHHHHHHhhhccccccccCCCCChHHHHH--
Q 003618 229 IDSLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHDRVDTYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHLPVLSI-- 306 (807)
Q Consensus 229 ~~~me~~~~l~~~~~~il~ed~~~~~~~~~~~~~~~~~~i~~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~~~L~~-- 306 (807)
..+.+-+=++----+ .|++ +..+..-.---..-..-|..-++.+-+-=+.++|++..+. +++...+..
T Consensus 442 ~~s~~rle~LlkClg-~L~~--~~~~~~~cPf~~~~~~~~~~al~kg~~~w~dr~~~~~q~~-------~~p~l~~~~~~ 511 (1103)
T KOG1328|consen 442 RNSGERLESLLKCLG-ALRE--SPFYQKYCPFKRPFHAHLESALVKGAEDWIDRSIESVQDP-------DPPKLLLQLLN 511 (1103)
T ss_pred CchHHHHHHHHHHHH-HHhc--CcchHhhCCCCccchHHHHHHHHhhhHHHHHHHHhccCCC-------CCchhHHHHHH
Confidence 775544433321122 2232 2122111100011244566777777777788999876543 223211111
Q ss_pred HHHH-----------HHHHHhhhhccccccchhccchhHHHHHHHHHHHHHHhHHHHHhhhhccChhHHhhcc-hhHHHH
Q 003618 307 LAQD-----------VTELAFDEKTIFSPILKRWHPLAAGVAVATLHSCYGNELRQFVSGITELTPDAIQVLL-AADKLE 374 (807)
Q Consensus 307 LA~~-----------~~~la~~e~~~fsPiL~~~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~~lt~~~~~vl~-aAd~LE 374 (807)
+-.| ..+++. .+.|+-+|+++-- ..+..++.....+=|..+..-..+++ .+-.+ ..+-+|
T Consensus 512 i~~d~q~~~~~Yaalf~~v~~--idyf~lt~~q~dr----lv~Ee~~s~~~~~~~~~~~sq~~ls~--~~~~pv~~~lfe 583 (1103)
T KOG1328|consen 512 IVNDQQSRFLHYAALFREVAR--IDYFQLTLNQFDR----LVTEELTSELMSEKKMDLKSQMRLSA--AQDPPVEDDLFE 583 (1103)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cceeeeeHHHHHH----HHHHHHHHHHhchhhhhhhhhhhccc--ccCCCccccHHH
Confidence 1111 112221 2366666766652 22344444444444444444333432 22222 234456
Q ss_pred HHHHHHh-hh--ccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCcHHH
Q 003618 375 KNLVQIA-VE--DSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARANKESIAPSAVE 451 (807)
Q Consensus 375 k~L~~i~-~e--~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E~W~P~s~~e~~S~SVVD 451 (807)
-||.-+. +| ++- .. .-+|.+--=+...+|.|-++.|++-..++..-=|+-|++-|.=.|.+...|||+|.+|
T Consensus 584 L~l~l~~f~~l~~~~--~a---~~~r~lals~~ha~F~p~ik~w~~V~k~kAl~Rv~~a~~mD~~~~~~~~~RhSSS~~d 658 (1103)
T KOG1328|consen 584 LMLILMAFVELRNYR--LA---NRVRVLALSEWHAIFNPGIKKWLEVAKEKALARVHLACQMDMPISTSSDMRHSSSHID 658 (1103)
T ss_pred HHHHHHHHHHHHhhc--cc---CCCcchhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhccccchhh
Confidence 6644221 11 110 00 0111122224668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccc---chhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcchhhhhcccc
Q 003618 452 VLRTIDETMEAFFMLPIPMHS---VLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKL 528 (807)
Q Consensus 452 vFr~i~etvd~ff~L~~p~~~---~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p 528 (807)
+=.++.+.-+.-..|.||+.. .+=+-|.+-+..+.-.||+.+....|..+.+ ..| .|
T Consensus 659 ~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~-------------~a~-------~p 718 (1103)
T KOG1328|consen 659 ICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQEL-------------QAF-------IP 718 (1103)
T ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------------hhc-------Ch
Confidence 999999999999999999744 2346788888999999999997544433332 111 11
Q ss_pred cccccccCCCCCCCCCCCCCcccceeecccHHHHHHHHHHHHHHHhhhhccCCCCCCCC-c-chhhhhhhhhhHHHHHHH
Q 003618 529 HTAQKRKSQVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDN-I-TNGIEKRFELSAASSVEA 606 (807)
Q Consensus 529 ~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek~i~~~~~~~~s~~~~~-~-~d~l~~~F~~s~~~~~~a 606 (807)
.+. .--+||-+||.+|.+.-++.-+|.. -|.. |+..++ . ...+....+.....+.+-
T Consensus 719 ~~~-----------------s~~lCv~iNNvE~VRrsl~~~~k~~--~~p~--~~~~~~~~l~~~~~n~les~~~~~~~e 777 (1103)
T KOG1328|consen 719 SQL-----------------SHLLCVAINNVEQVRRSLNITEKLH--MDPR--SRLNGNHMLKSEIENRLESCESNICSE 777 (1103)
T ss_pred HHH-----------------HHHHHHHHccHHHHHHHHhHHhhhc--cCcc--cccCccccCchHHHHHHHHHHHHHHHH
Confidence 110 1237999999999999998888743 2322 211111 1 113333334444444444
Q ss_pred HHHHHHHhhhhheeecchhhhhhhcccCC--CCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHh
Q 003618 607 IQQLSEAIAYKVIFHDLSHVLWDGLYVGE--VSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLL 684 (807)
Q Consensus 607 i~~l~e~ia~rvVF~Dl~~~l~~~LY~g~--V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL 684 (807)
|+.+.-..+-|++. ||+...++.-...+ ..+.-|.|+++|||-.|..+.+.+..+...|++..+|+.++..+..-
T Consensus 778 ~~ri~~~Lt~~m~~-~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~~l~~~-- 854 (1103)
T KOG1328|consen 778 IDRIVGLLTERMLP-QMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQWSIVLKLLREC-- 854 (1103)
T ss_pred HHHHHHHhhHHhhH-HHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--
Confidence 55554444444443 44432222212211 23667999999999999999999999999999999999999888443
Q ss_pred cCCCCCCCCccchHHHHHHHHHHHHhcccCCCCCcHHHHHHh-HHhHhhhccccccChHHHHHHH
Q 003618 685 AGGPSRAFTHQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKF-STSVRSILPLYHNDTESLIEEF 748 (807)
Q Consensus 685 ~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~GeGLp~~~vek~-~~~v~~vL~L~~~~Td~LIe~f 748 (807)
-|..+-.++.=+.-+-+.+..|-+||||+|+||+.|-++.. ...+.++|.|...+|++|||.|
T Consensus 855 -~g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~~rl~~~L~lhkt~T~~lIe~f 918 (1103)
T KOG1328|consen 855 -VGENVDMEPAFYHRLFEALHVLVEFFHAEGQGLSLEALDTNPEHRLVKILSLHKTPTEQLIEKF 918 (1103)
T ss_pred -hcccCCCChHHHHHHHHHHHHHHHHHhccCCCcchHhhccCcHHHHHHHHHhcCCCHHHHHHHH
Confidence 45566666666778889999999999999999999999884 6789999999999999999998
No 4
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=99.82 E-value=1.7e-20 Score=181.46 Aligned_cols=110 Identities=35% Similarity=0.584 Sum_probs=81.5
Q ss_pred cchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHH-hc-----------------------CCCCCCCCc
Q 003618 639 SRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVL-LA-----------------------GGPSRAFTH 694 (807)
Q Consensus 639 ~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VL-L~-----------------------GGpsR~Fs~ 694 (807)
+.|+|+|+|||.+|.++++.|.+++..+|++++|+.++.++...+ +. +|..|.+++
T Consensus 2 ~ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 81 (137)
T PF10540_consen 2 DAIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTP 81 (137)
T ss_dssp HHHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCH
Confidence 468999999999999999999999999999999999999988877 32 467899999
Q ss_pred cchHHHHHHHHHHHHhcccCCCCCcHHHHHH--hHHhHhhhccccccChHHHHHHH
Q 003618 695 QDSDIIEEDFKFLCDLFWSNGDGLPADLIDK--FSTSVRSILPLYHNDTESLIEEF 748 (807)
Q Consensus 695 ~D~~~leeDl~~LK~~F~a~GeGLp~~~vek--~~~~v~~vL~L~~~~Td~LIe~f 748 (807)
.+|++++.+|+.|++||||+|+|||.+++|+ .++.+++++.||+++||+||++|
T Consensus 82 ~q~~~l~~~L~~L~~FFhA~G~Gl~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 82 KQCDRLFKWLDTLKDFFHAEGNGLPLEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp TCHHHHHHHHHHHHHHHHCCCTS--HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 9999999999999999999999999999955 58999999999999999999987
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=98.96 E-value=7.7e-09 Score=121.46 Aligned_cols=438 Identities=18% Similarity=0.259 Sum_probs=210.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHhhhccccccccCCCCChHHHHHHHHHHHHHHhhhhccccccchhccchhHHHHHHHHHHH
Q 003618 265 HDRVDTYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHLPVLSILAQDVTELAFDEKTIFSPILKRWHPLAAGVAVATLHSC 344 (807)
Q Consensus 265 ~~~i~~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~~~L~~LA~~~~~la~~e~~~fsPiL~~~~p~a~~vaA~~Lh~~ 344 (807)
++++-.-|+.|++..|.+..+....+.. .......|..+-+|+..+-..=...|-| .|+ +.. .-+...|++
T Consensus 79 r~~~~~~l~~sv~~~~~~~~~~~~~~~~----l~~~l~~l~~~~~DL~~v~~~~~~cfPp---~~~-I~~-~y~~~YH~~ 149 (566)
T PF06046_consen 79 RQKFFEALRESVEERFEQAEEREENKSW----LARHLEALRWVLEDLQVVKDDVVPCFPP---EYD-IFN-TYVSMYHNA 149 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCchH----HHHHHHHHHHHHHHHHHHHHhCcccCCC---CCh-HHH-HHHHHHHHH
Confidence 3455666778888877744444333321 0111222323444444442222334444 233 322 444566666
Q ss_pred HHHhHHHHHhhhhccChhHHhhcchhHHHH--HHHHHHhhhccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHH
Q 003618 345 YGNELRQFVSGITELTPDAIQVLLAADKLE--KNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDR 422 (807)
Q Consensus 345 yg~dLk~~L~~~~~lt~~~~~vl~aAd~LE--k~L~~i~~e~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k 422 (807)
++..|+.+ .. .-+.+.+-+. .| .+.|.. -...++.+ . ...+.|-=.++....++..++.....+
T Consensus 150 l~~~l~~l----~~------~~l~~~~ll~ll~W-~~~Y~~-~m~~~~l~-~-~~~l~plL~~~~~~~L~~~Yl~~~~~~ 215 (566)
T PF06046_consen 150 LSDHLQEL----IS------PDLEANDLLSLLSW-VNTYPS-IMGHPDLA-I-KEQLGPLLPDEKLEELEDDYLSRIQKK 215 (566)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----cc------CCCCHHHHhhheec-hhhChH-hhcCCccc-c-hhhccCCCChhHHHHHHHHHHHHHHHH
Confidence 66666654 11 1233333333 33 333332 11122211 1 335566666777899999999999999
Q ss_pred HHHHHHhhhhccc--c----ccC-C-CCCCCCCcHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 003618 423 LKEWVCRNLQQEV--W----NAR-A-NKESIAPSAVEVLRTIDETMEAFFMLPIPMHSVLLPELISGLDGCLQHYVLKAK 494 (807)
Q Consensus 423 ~~ewv~raiq~E~--W----~P~-s-~~e~~S~SVVDvFr~i~etvd~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~ 494 (807)
+.+|+++++++|. | .|. + +...|++..+|||+|++|.++.. .=.....++......+.+.+..|-..+.
T Consensus 216 ~~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va---~~~l~~~v~~~v~~~~~~~l~~~~~~~~ 292 (566)
T PF06046_consen 216 MKEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVA---SESLQGKVLQRVLEELANFLKSYQDAWQ 292 (566)
T ss_dssp HHHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHH---HHTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999874 4 455 2 23348889999999999999998 1113455677777777777777777764
Q ss_pred hccCCCCCCCCCCccccccccCCcchhhhhcccccccccccCCCCCCCCCCCCCcccceeecccHHHHHHHHHHHHHHHh
Q 003618 495 SGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTV 574 (807)
Q Consensus 495 ~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek~i~ 574 (807)
..+ +. .+++...+. +.. ....+.+.+|.-+||-......++.++..+.
T Consensus 293 ~~~------------------~~---~~~~~~~~~--~~~---------~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~ 340 (566)
T PF06046_consen 293 EFK------------------EE---HFKDRSSVK--PKE---------NPPGYLEYLIAVANNCLRCRDYVESLEQKFE 340 (566)
T ss_dssp HHH------------------HH---HHHHHHHHH--HCC-----------S-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------------------HH---HHHhhhccc--ccc---------cccchHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 311 00 111111000 000 0112456689999999999999999988765
Q ss_pred hhhccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhhhhheeecchhhhhhhcccCC-CCccchhhhHHHHHHHHH
Q 003618 575 HQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDLSHVLWDGLYVGE-VSSSRIEPFLQELEHYLE 653 (807)
Q Consensus 575 ~~~~~~~s~~~~~~~d~l~~~F~~s~~~~~~ai~~l~e~ia~rvVF~Dl~~~l~~~LY~g~-V~~~RI~plL~~Ld~~L~ 653 (807)
..... +....+...|+.+.....+...+.+.++. ..||.|+...| ..|+... ..+.-++.++..++.++.
T Consensus 341 ~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~L~-~~if~Dl~p~~-~~Lft~~W~~~~~~~~I~~Ti~dY~~ 411 (566)
T PF06046_consen 341 EKVSQ-------KYMERISSDLEELMDGFDDLAKECCQYLL-EEIFNDLKPHF-KKLFTKKWYSGEAVDTICATIEDYLQ 411 (566)
T ss_dssp TTS-H-------HHHHHHHHHHCTTHHHHHHHHHHHHHHHH-HHHHHCTHHHH-CTTTSGGGCTS-HHHHHHHHHHHHHH
T ss_pred cccch-------HHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHH-HHhCcCcCcCcchHHHHHHHHHHHHH
Confidence 43210 01123334444444444333333333321 23677987655 3333221 223678999999999999
Q ss_pred HHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCC-C--CCCccchHHHHHHHHHHHHhcccCCCCCcHHHHHHhHHhH
Q 003618 654 IISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPS-R--AFTHQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKFSTSV 730 (807)
Q Consensus 654 ~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGps-R--~Fs~~D~~~leeDl~~LK~~F~a~GeGLp~~~vek~~~~v 730 (807)
-+...+.+.....++.++...++-.++..++-+..+ | .=..+=.+-|..|.+.|++||-.-| ..+.+......+
T Consensus 412 d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~---~~~~~~~~~~~l 488 (566)
T PF06046_consen 412 DFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG---SKSEVKSSFDVL 488 (566)
T ss_dssp HHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccccchHHHH
Confidence 999989999999999999999999999999987742 2 2234447799999999999999888 778888888999
Q ss_pred hhhcccc-ccChHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCcceeeeccccCC
Q 003618 731 RSILPLY-HNDTESLIEEFKRLTLESYGSSAKSRLPLPPTSGQWNPTEPNTVLRVLCYRSD 790 (807)
Q Consensus 731 ~~vL~L~-~~~Td~LIe~f~~~~~~~~g~~~~~~lp~p~t~~~~~~~d~ntiLRVLchR~D 790 (807)
..++.+. ..+++.+...+..... +.| .-..+.|-.||.-|.|
T Consensus 489 ~~l~~ll~~~d~~~i~l~~~~l~~---------~yp---------D~~~~~v~alL~~R~D 531 (566)
T PF06046_consen 489 EDLLELLRLEDPEMIKLEVSSLLQ---------KYP---------DISEEHVEALLALRGD 531 (566)
T ss_dssp HHHHHHH-HS-CCCHHHHHHHHHC---------C-T---------T--SHHHHHHHCT-TT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---------hCC---------CCCHHHHHHHHHhccC
Confidence 9999988 7777777666655442 111 2455688888888875
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.52 Score=56.45 Aligned_cols=364 Identities=16% Similarity=0.190 Sum_probs=204.4
Q ss_pred HHHHHhHHHHhhcCccchhHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHHHHHHHHH-HHhhhhhhhhhcCCchh----
Q 003618 156 CFGWILFHRYVSTGQVESDLLFAANNLLMEIEKDAKAAKDADYSKILSSILNTILDWA-GQRLRDYHDIFHDDNID---- 230 (807)
Q Consensus 156 cf~WvlF~q~v~tgq~e~~Ll~~a~~~l~~v~~dak~~~d~~~~~~l~s~l~~i~~W~-ekrL~dYH~~f~~~~~~---- 230 (807)
|-+|+==|+| |++ ..+|+|..+.++-. ++ =++-.-..-|++-++.++.=. .+-..||-..|+.|+.+
T Consensus 139 L~~l~~kr~y---~e~-a~~lqai~~ll~~F--~~--Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~ 210 (793)
T KOG2180|consen 139 LNALLSKRSY---GEA-ASPLQAILQLLNHF--IA--YKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEAL 210 (793)
T ss_pred HHHHHhhccH---HHH-HhHHHHHHHHHHHH--HH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 5556555555 333 34555555554421 12 123233355666677776544 45568999999998862
Q ss_pred hHhHHHHHHHHHhhhhhcchhhhhccccCccccchhhHHHHHHhhHHHHHHHHHhhhccccccccCCCCChHHHHHHHHH
Q 003618 231 SLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHDRVDTYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHLPVLSILAQD 310 (807)
Q Consensus 231 ~me~~~~l~~~~~~il~ed~~~~~~~~~~~~~~~~~~i~~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~~~L~~LA~~ 310 (807)
.|+-+-. +++++ |+- ..++-..-|+-||+-=+.. |.++-+. +...+.. ++-.-.-+-+-
T Consensus 211 ~l~~l~d----aC~v~--d~l--------epsvreelIkwf~~qqL~e-y~~IF~e-n~E~a~L---DkidrRY~wfK-- 269 (793)
T KOG2180|consen 211 LLQKLSD----ACLVV--DAL--------EPSVREELIKWFCSQQLEE-YEQIFRE-NEEAASL---DKLDRRYAWFK-- 269 (793)
T ss_pred HHHHHHH----HHHHH--HHh--------CCccHHHHHHHHHHHHHHH-HHHHHhc-cHhhhhh---hhHHHHHHHHH--
Confidence 1221111 11111 100 1124456676666543322 3333322 1111111 12222222222
Q ss_pred HHHHHhhhhccccccchh-ccchhHHHHHHHHHHHHHHhHHHHHhhhhc-cC-hhHHhhcchhHHHHHHHHHHhhhcccc
Q 003618 311 VTELAFDEKTIFSPILKR-WHPLAAGVAVATLHSCYGNELRQFVSGITE-LT-PDAIQVLLAADKLEKNLVQIAVEDSVD 387 (807)
Q Consensus 311 ~~~la~~e~~~fsPiL~~-~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~~-lt-~~~~~vl~aAd~LEk~L~~i~~e~s~~ 387 (807)
+.|-..| ..|.|++=. || .+..++..+ ..-=-.+|...|.+..+ ++ .=.+--|+..-.+|++|-.-...+...
T Consensus 270 -r~L~~fe-~k~~~iFP~dW~-v~~RLt~eF-c~~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~ 345 (793)
T KOG2180|consen 270 -RLLRDFE-EKWKPIFPADWH-VAYRLTIEF-CHQTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLT 345 (793)
T ss_pred -HHHHHHH-HhccccCCcccc-hhHHHHHHH-HHHHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3333334 578887754 99 777676443 33344778888887643 33 223344567778999987443211110
Q ss_pred --CCCCcccccccCCCcc--hhhHhHHHHHHHHHHHHHHHHHHHHhhhhccccc--cCCCCCC---CCCcHHHHHHHHHH
Q 003618 388 --SEDGGKSIIQEMPPYE--AEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWN--ARANKES---IAPSAVEVLRTIDE 458 (807)
Q Consensus 388 --~~dgg~~~vr~m~Py~--ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E~W~--P~s~~e~---~S~SVVDvFr~i~e 458 (807)
.+++++-.-.+-++|+ +.+.|.|++.-||+.+...+.+-+++-.+.++|. |.++.+- -=+|-.|+|+.-+-
T Consensus 346 ~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykk 425 (793)
T KOG2180|consen 346 GKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKK 425 (793)
T ss_pred CCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHH
Confidence 1122221112235664 8899999999999999999999999999999997 6552222 33677899999999
Q ss_pred HHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCc-chhhhh-cccccccccccC
Q 003618 459 TMEAFFMLPIPMHSVLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSK-FGAFKR-KEKLHTAQKRKS 536 (807)
Q Consensus 459 tvd~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~-f~~~Kk-k~~p~~~~~~~~ 536 (807)
++-+..+|-=.. +=|-++..-+.+.++.|+.++.. |.+|..|-..-+.. +..++- ....|.+
T Consensus 426 cltq~~~Ls~n~--dpl~~~~~~f~k~LreYa~kil~---------~~lP~~t~~s~g~~v~~l~~~e~~~~~~~----- 489 (793)
T KOG2180|consen 426 CLTQCSELSENN--DPLIALLAVFSKWLREYAQKILL---------GNLPDTTSSSDGAAVYLLLRIEGAEYCRF----- 489 (793)
T ss_pred HHHHHHHhccCC--chHHHHHHHHHHHHHHHHHHHhh---------ccCCcccccccCchhhhHHHhhhhhhhcc-----
Confidence 999999996332 22333444888999999999965 33665554432221 212231 1111110
Q ss_pred CCCCCCCCCCCCcccceeecccHHHHHHHHHHHHHHHhhh
Q 003618 537 QVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTVHQ 576 (807)
Q Consensus 537 ~~~~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek~i~~~ 576 (807)
+--..-..|.+||+.+|...---.+|+++.+.
T Consensus 490 --------t~d~l~di~~~lst~e~~~~tt~qle~kl~e~ 521 (793)
T KOG2180|consen 490 --------TIDQLLDICCILSTAEYCLATTIQLEKKLKEI 521 (793)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00012236999999999999888888876543
No 7
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=97.25 E-value=0.00092 Score=62.51 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhccccccchhccc--hhHHHHHHHHHHHHHHhHHHHHhh
Q 003618 300 HLPVLSILAQDVTELAFDEKTIFSPILKRWHP--LAAGVAVATLHSCYGNELRQFVSG 355 (807)
Q Consensus 300 ~~~~L~~LA~~~~~la~~e~~~fsPiL~~~~p--~a~~vaA~~Lh~~yg~dLk~~L~~ 355 (807)
.......||.=+-++.+.+++.|+|+|++|.. ..+.++|.++|++|+.||+..|+.
T Consensus 48 ~Le~w~~L~eL~v~vleed~e~y~~vln~F~~~~~l~~~hAE~fWsLfa~Dm~~aLee 105 (106)
T PF06292_consen 48 KLEFWIRLIELCVSVLEEDKEHYAPVLNQFPWELDLGVEHAEIFWSLFAVDMDAALEE 105 (106)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44778889999999999999999999999654 889999999999999999999875
No 8
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.72 E-value=0.0077 Score=66.50 Aligned_cols=252 Identities=15% Similarity=0.147 Sum_probs=142.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcch
Q 003618 441 NKESIAPSAVEVLRTIDETMEAFFMLPIPMHSVLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFG 520 (807)
Q Consensus 441 ~~e~~S~SVVDvFr~i~etvd~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~ 520 (807)
..-+||+.+..+.+.++..++.++.+--..+ . -..-++..+.+|.+.+.... +-
T Consensus 26 ~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~----~-~~~eid~~v~ks~d~lL~~~---------------------l~ 79 (311)
T PF04091_consen 26 KKLPFSQMVPMCCRQIRSFIEKCYKFSDDLY----Q-SSTEIDDIVRKSLDRLLTRV---------------------LN 79 (311)
T ss_dssp --SSSBTHHHHHHHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHH---------------------HH
T ss_pred eeCCCchHHHHHHHHHHHHHHHHHHHHHhcc----c-chHHHHHHHHHHHHHHHHHH---------------------HH
Confidence 4458999999999999999999987642211 1 12234556777776663210 10
Q ss_pred -hhhhcccccccccccCCCCCCCCCCCCCcccceeecccHHHHHHHHHHHHHHHhhhhccCCCCCCCCcchhhhhhhhhh
Q 003618 521 -AFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELS 599 (807)
Q Consensus 521 -~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL~yi~~qLd~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s 599 (807)
..++++. .+ ++..+++=.+.|++|...-...+|+.+...-+..++.. ...+......|..+
T Consensus 80 ~~L~~~i~----------------~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~-~~~~l~a~~~f~~~ 141 (311)
T PF04091_consen 80 GSLKSKIR----------------SS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAG-GHIRLKATKMFKDA 141 (311)
T ss_dssp HHHHHHHT-----------------T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---
T ss_pred HHHHHHHh----------------cC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccch-HhHhhhhHHHHHHH
Confidence 1233331 11 35677888899999999999999987755432222111 11123446788888
Q ss_pred HHHHHHHHHHHHHHhhhhhe-eecchhhhhhhcccCCCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH
Q 003618 600 AASSVEAIQQLSEAIAYKVI-FHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEG 678 (807)
Q Consensus 600 ~~~~~~ai~~l~e~ia~rvV-F~Dl~~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~ 678 (807)
|..+...|-. .+..|+- |.++-..=|..--..+-++.=|..++.||+..++..-..+...++..+..+.|+.+-+.
T Consensus 142 r~~Ae~~I~~---lv~~KIDe~lela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~ 218 (311)
T PF04091_consen 142 RKAAEKRIFE---LVNSKIDEFLELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISES 218 (311)
T ss_dssp TTHHHHHHHH---HHHHHHHHHHTT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 7765555443 3333431 22332211222222223466699999999999988889999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcccC-CCCCcHHHHHHhHHhHhhhccccccC
Q 003618 679 FLLVLLAGGPSRAFTHQDSDIIEEDFKFLCDLFWSN-GDGLPADLIDKFSTSVRSILPLYHND 740 (807)
Q Consensus 679 ~l~VLL~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~-GeGLp~~~vek~~~~v~~vL~L~~~~ 740 (807)
|+-.|++.+ -|.+++.=+.-++-|++.|.+|--+. ..|.....+...-..+|+.++|+-.+
T Consensus 219 l~~~Ll~~~-vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~ 280 (311)
T PF04091_consen 219 LLDLLLSDD-VKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSD 280 (311)
T ss_dssp HHHHHT----------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH--
T ss_pred HHHHhcCCc-ccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcC
Confidence 999988544 56679999999999999999998877 12222333344445688888866443
No 9
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.46 E-value=0.1 Score=60.90 Aligned_cols=229 Identities=14% Similarity=0.202 Sum_probs=145.4
Q ss_pred HHHHhhhhhhhhhcCCch-hhHhHHHHHHHHHhhhhhcchhhhhccccCccccchhhHHHHHHhhHHHH----HHHHHhh
Q 003618 212 WAGQRLRDYHDIFHDDNI-DSLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHDRVDTYIRSSLRTA----FAQKLKK 286 (807)
Q Consensus 212 W~ekrL~dYH~~f~~~~~-~~me~~~~l~~~~~~il~ed~~~~~~~~~~~~~~~~~~i~~yI~sS~~~a----f~~~~e~ 286 (807)
-.|++...+.--|+=|.. +...+.+++ --++|-.|+. .-+...-|..-||.-+..| |+|+-+-
T Consensus 719 llenqithfrycfpfgrpegalkatlsl---lervlmkdiv---------tpvp~eevk~virkcle~aalvnytrl~ey 786 (1218)
T KOG3543|consen 719 LLENQITHFRYCFPFGRPEGALKATLSL---LERVLMKDIV---------TPVPPEEVKAVIRKCLEDAALVNYTRLCEY 786 (1218)
T ss_pred HHHhhhhceEeeccCCCcchHHHHHHHH---HHHHHHHhcC---------CCCCHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 357777776666664432 345555555 3455655543 1234566777777776666 5554443
Q ss_pred hcccccc--ccCCCCChHHHHHHHHHHHHHHhhhhccccccchhccchhHHHHHHHHHHHHHHhHHHHHhhhhccChhHH
Q 003618 287 VNSSKKL--SKNQPNHLPVLSILAQDVTELAFDEKTIFSPILKRWHPLAAGVAVATLHSCYGNELRQFVSGITELTPDAI 364 (807)
Q Consensus 287 ~~~~~~~--~~~~~~~~~~L~~LA~~~~~la~~e~~~fsPiL~~~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~~lt~~~~ 364 (807)
+.-...- ...-....+-...||+-+-++...--+...-.+.-|. --.+.-|.++|++|+.|+-..|+--. +|+-
T Consensus 787 akiee~m~~a~~~a~kled~irlaelcievlqqneehhgeafawws-dll~ehae~fwslfsvdmdsalevqp---~dsw 862 (1218)
T KOG3543|consen 787 AKIEERMGIAVSPAQKLEDMIRLAELCIEVLQQNEEHHGEAFAWWS-DLLSEHAEIFWSLFSVDMDSALEVQP---HDSW 862 (1218)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHhHH-HHHHHHHHHHHHHHhcccchhcccCC---CCcc
Confidence 2211100 0000011233344554444433322244555555555 44447789999999999988776443 3445
Q ss_pred hhcchhHHHHHHHHHHhhhccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 003618 365 QVLLAADKLEKNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARANKES 444 (807)
Q Consensus 365 ~vl~aAd~LEk~L~~i~~e~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E~W~P~s~~e~ 444 (807)
..+|--..|+.+|.. |+ +++...+.=.+-..|.|+|-++++--+.-|..-++|-+++|+|+|..+..
T Consensus 863 dsfplfqllndflr~----d~--------~lcngkfhkhlq~~f~plvvryvdlmessiaqsihrgfe~e~wepvkngs- 929 (1218)
T KOG3543|consen 863 DSFPLFQLLNDFLRS----DS--------SLCNGKFHKHLQQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWEPVKNGS- 929 (1218)
T ss_pred ccchHHHHHHHHHhh----hh--------hcccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhhccccccCCC-
Confidence 555655666666653 22 34445566679999999999999999999999999999999999998654
Q ss_pred CCCcHHHHHHHHHHHHHHHhcCCCCcc
Q 003618 445 IAPSAVEVLRTIDETMEAFFMLPIPMH 471 (807)
Q Consensus 445 ~S~SVVDvFr~i~etvd~ff~L~~p~~ 471 (807)
...-|+|=-++..--..+.|.||..
T Consensus 930 --atsedlfwkldalqtfv~dlhwpee 954 (1218)
T KOG3543|consen 930 --ATSEDLFWKLDALQTFVIDLHWPEE 954 (1218)
T ss_pred --cchHhHHHHHHHHHHHHhhcCCCHH
Confidence 4557999988888888899999953
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.21 E-value=0.19 Score=58.91 Aligned_cols=291 Identities=16% Similarity=0.211 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-cccccCCCC-------CCCCCcHHHHHHHHHHHHHHHhcCCCCc-ccchhHHHH
Q 003618 409 GNLAKSWINIRVDRLKEWVCRNLQQ-EVWNARANK-------ESIAPSAVEVLRTIDETMEAFFMLPIPM-HSVLLPELI 479 (807)
Q Consensus 409 ~~~v~~Wi~~~~~k~~ewv~raiq~-E~W~P~s~~-------e~~S~SVVDvFr~i~etvd~ff~L~~p~-~~~~l~~L~ 479 (807)
......|++--.+-..+=++..+.. +.|++..+. -+=..|++++.++++...+.+..||-.. ...|+..+-
T Consensus 131 ~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iq 210 (494)
T PF04437_consen 131 PDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQ 210 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 4566889887666666666666653 689888332 2346889999999999999998887664 344564444
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcchhhhhcccccccccccCCCCCCCCCCCCCcccceeecccH
Q 003618 480 SGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINTF 559 (807)
Q Consensus 480 ~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL 559 (807)
-.| +.+|-..+...| ..|........ . . ...-+..++|..+|+.
T Consensus 211 l~l---ld~~~~~L~~~~-------------------~~~~~~~s~~~---~--~---------~~~~~l~~l~~~lnsa 254 (494)
T PF04437_consen 211 LPL---LDDYHDRLSQSL-------------------EAFESSTSTLA---S--L---------SGDSGLERLCKILNSA 254 (494)
T ss_dssp HHH---HHHTHHHHHHHH-------------------HHHHHT----S---C--E---------EHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHH-------------------HHHhhcccchh---h--c---------cCCchHHHHHHHHHHH
Confidence 332 344444443222 00100000000 0 0 0011467799999999
Q ss_pred HHHHHHHHHHHHHHhhh---hccCCCCC-C-CCcchh----hhhhhhhhHHHHHHHHHHHHHHhhhhhe------eecch
Q 003618 560 QHIRKELEVLEKKTVHQ---LRSSHSTR-T-DNITNG----IEKRFELSAASSVEAIQQLSEAIAYKVI------FHDLS 624 (807)
Q Consensus 560 ~yi~~qLd~Lek~i~~~---~~~~~s~~-~-~~~~d~----l~~~F~~s~~~~~~ai~~l~e~ia~rvV------F~Dl~ 624 (807)
+|+...|....+.+-.- .....+.. . .+..+. -.+.|+.+.+....-.+++.+.+...++ .....
T Consensus 255 ~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~ 334 (494)
T PF04437_consen 255 NYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYF 334 (494)
T ss_dssp HHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887744322 00111000 0 011112 2347888877666655555555544332 11111
Q ss_pred h-hhhhhcccC-----CCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchH
Q 003618 625 H-VLWDGLYVG-----EVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSD 698 (807)
Q Consensus 625 ~-~l~~~LY~g-----~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~ 698 (807)
+ .-|...... ...++.+-|.|..|...|..+...+......++-+.+...+-+-|..-++- ...||+....
T Consensus 335 k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~---~n~Fs~~Ga~ 411 (494)
T PF04437_consen 335 KRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILM---SNKFSRAGAA 411 (494)
T ss_dssp T--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTT---TS-B-HHHHH
T ss_pred CccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhh---cCeeChhHHH
Confidence 1 224433333 123667899999999999988888776665555555554444333332232 3499999999
Q ss_pred HHHHHHHHHHHhcccCCCCCcHHHHHHhHHhHhhhccccccChHH
Q 003618 699 IIEEDFKFLCDLFWSNGDGLPADLIDKFSTSVRSILPLYHNDTES 743 (807)
Q Consensus 699 ~leeDl~~LK~~F~a~GeGLp~~~vek~~~~v~~vL~L~~~~Td~ 743 (807)
-+..|++.|...|.. ..+.|. .....++..+.|..++.+.
T Consensus 412 Ql~~D~~~L~~~~~~-~~~~p~----~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 412 QLQFDMRALFSVFSQ-YTPRPE----AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp HHHHHHHHHHTTS---TTSGG-----HHHHHHHHHHHHHGGGG-C
T ss_pred HHHHHHHHHHHHHHh-hccCHH----HHHHHHHHHHHHcCCCCcc
Confidence 999999999999998 333454 3444455555555555543
No 11
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=54 Score=40.24 Aligned_cols=370 Identities=14% Similarity=0.163 Sum_probs=200.1
Q ss_pred hHHHHHHHHHHHHHHhhhhc-cccccchhccc--hhHHHHHHHHHHHHHHhHHHHHhhhhccChhHHhhcchhHHHHHHH
Q 003618 301 LPVLSILAQDVTELAFDEKT-IFSPILKRWHP--LAAGVAVATLHSCYGNELRQFVSGITELTPDAIQVLLAADKLEKNL 377 (807)
Q Consensus 301 ~~~L~~LA~~~~~la~~e~~-~fsPiL~~~~p--~a~~vaA~~Lh~~yg~dLk~~L~~~~~lt~~~~~vl~aAd~LEk~L 377 (807)
...+..++.-......+|.. .+.++..-++| ..+ ...-..|.+.|..++.++.+.-+++.+.++= =.|.
T Consensus 232 ~~w~~~~~e~~r~~i~EdL~~~~~~l~~cfpp~~~if----~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~l----lawV 303 (667)
T KOG2286|consen 232 KEWQVRLLEVLRFVIREDLRVAKRVLVPCFPPHYNIF----SAYLELYHQALSDLLRDLASEALELREILQL----LAWV 303 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHH----HHHHHHHHHHHHHHHHHHhhccccHHHHHHH----HHHH
Confidence 44555555555544444433 22233333333 222 2255667777887777776655544433321 1222
Q ss_pred HHHhhhccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhhhhcc--ccccC----CCCC--CCCCcH
Q 003618 378 VQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQE--VWNAR----ANKE--SIAPSA 449 (807)
Q Consensus 378 ~~i~~e~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E--~W~P~----s~~e--~~S~SV 449 (807)
.+++..... ..++. ..+..-|-=-.+-+..++....+..-.++.+|+.++.+.| .|--. .+.+ -|++=.
T Consensus 304 ~~~~~~~~l--~~~~~-~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p 380 (667)
T KOG2286|consen 304 RNEYYTPLL--QLNVD-VLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGP 380 (667)
T ss_pred HHHhcChhh--hccch-hhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccc
Confidence 222210000 00000 0111223223355666777777778889999999999865 45432 2333 378889
Q ss_pred HHHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcchhhhhccccc
Q 003618 450 VEVLRTIDETMEAFFMLPIPMHSVLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLH 529 (807)
Q Consensus 450 VDvFr~i~etvd~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~ 529 (807)
+++|.|+.|.++.+-.. ..++..-+-+.+-.|+....+. |.++ +...+... +
T Consensus 381 ~~~fqmi~q~l~~~~~~--------~~Dl~~~~~~~~~~~v~~f~~~----------------~~~~--~~~~~e~~-~- 432 (667)
T KOG2286|consen 381 VIFFQMITQQLQVAAAT--------SSDLSGKILRSLLSEVPSFARN----------------YPKA--QDEDQESH-R- 432 (667)
T ss_pred HHHHHhhHHHHHHHHhh--------HHHHHHHHHHHHHHHhHHHHHH----------------HHHh--HHHHHHhc-h-
Confidence 99999999999988776 2333333333344444444221 1110 00001110 0
Q ss_pred ccccccCCCCCCCCCCCCCcccceee-cccHHHHHHHHHHHHHHHhhhhccCCCCCCCCcchhhhhhhhhhHHHHHHHHH
Q 003618 530 TAQKRKSQVGTTNGDNSFGVPQLCCR-INTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQ 608 (807)
Q Consensus 530 ~~~~~~~~~~~~~~~~s~~~~~lCVr-LNnL~yi~~qLd~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s~~~~~~ai~ 608 (807)
.+ ..-+++..|+- .||=..+.. .+...|.. -|.+...-++.....+.++.
T Consensus 433 ---~~----------~~~~l~~y~iA~~N~~~~~a~-------~~~~~~~~---------~d~~~~~l~~~~~i~~~~~~ 483 (667)
T KOG2286|consen 433 ---RE----------QPEGLREYLIANINNNLKMAM-------LMVNLKSK---------YDTLKGLLDGFIEIAKHGVS 483 (667)
T ss_pred ---hc----------ccccHHHHHHHHHhchhHHHH-------HHHHHHhc---------cchhHHHhHHHHHHHHhHHH
Confidence 00 11122232321 122222221 12111100 02333344444555567788
Q ss_pred HHHHHhhhhheeecchhhhhhhcccCCC-CccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 003618 609 QLSEAIAYKVIFHDLSHVLWDGLYVGEV-SSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGG 687 (807)
Q Consensus 609 ~l~e~ia~rvVF~Dl~~~l~~~LY~g~V-~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GG 687 (807)
.|.+. +|.|+...| ..||...= ..+..+-+...|+..|.-+....... +.+++-++-.+.+-.+++-|+-+-
T Consensus 484 ~l~e~-----~~~d~~~~~-~~lf~~~W~~g~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr 556 (667)
T KOG2286|consen 484 GLLEE-----IFLDLQPLL-NKLFTKEWCAGSVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKR 556 (667)
T ss_pred HHHHH-----HHHHHHHHH-HHHhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87777 577887544 33443221 23677888999999999999999888 999999999999999999998754
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcccCCCCCcHHHHHHhHHhHhhhccccccChHHHHHHHHHHH
Q 003618 688 PSRAFTHQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLT 752 (807)
Q Consensus 688 psR~Fs~~D~~~leeDl~~LK~~F~a~GeGLp~~~vek~~~~v~~vL~L~~~~Td~LIe~f~~~~ 752 (807)
.+ -.+=..-|-.|.+.+++||---|+ +.+-.-.....+..++.++ +-|.++..+...-
T Consensus 557 ~~---~~~~~~~i~~d~~~~~~~f~~~~~--~~~~~~~~~~~l~el~~~~--d~d~~~~~~~~l~ 614 (667)
T KOG2286|consen 557 AS---IQELIEKIKSDAETLYHFFRKYGS--DVDTLISTISTLAELISLQ--DPDLIKLEVSTLL 614 (667)
T ss_pred hh---HHHHHHHHHhhHHHHHHHHHHhCc--chhhhhhhhHHHHHHHhcC--ChHHHHHHHHHHH
Confidence 44 232244566799999999988887 3333333334444444433 7777777766554
No 12
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=86.31 E-value=82 Score=37.70 Aligned_cols=284 Identities=18% Similarity=0.247 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhc--cccccCC-------CCCCCCCcHHHHHHHHHHHHHHHhcCCCCcccchhHHH
Q 003618 408 IGNLAKSWINIRVDRLKEWVCRNLQQ--EVWNARA-------NKESIAPSAVEVLRTIDETMEAFFMLPIPMHSVLLPEL 478 (807)
Q Consensus 408 ~~~~v~~Wi~~~~~k~~ewv~raiq~--E~W~P~s-------~~e~~S~SVVDvFr~i~etvd~ff~L~~p~~~~~l~~L 478 (807)
-+.+++...+-...|++||+.+..+. |+|-.++ +.-.+.+--|=.|.|+.|-++.+-.=+ .++++--.
T Consensus 373 ~g~L~~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn---~sdvvgiV 449 (742)
T COG5173 373 TGELLEKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTN---RSDVVGIV 449 (742)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCC---ccchhhhh
Confidence 35788888889999999999998875 5664442 333477888999999999998776544 33333333
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCccccccccCCcchhhhhcccccccccccCCCCCCCCCCCCCcccceeeccc
Q 003618 479 ISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINT 558 (807)
Q Consensus 479 ~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNn 558 (807)
...|...++.|+..-++.+. + .+++.... + |+..|. -|+-+-|+..-|
T Consensus 450 ~~~i~~~~tk~q~~wks~l~--e-------------------e~~kq~~~-n-pEs~~p---------~Gl~eyliav~N 497 (742)
T COG5173 450 FAHITRTITKYQEIWKSNLV--E-------------------EMDKQFKS-N-PESSSP---------AGLEEYLIAVGN 497 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH--H-------------------HHHHHhcC-C-CccCCc---------chHHHHHHHHcC
Confidence 44444447777766543220 0 11221110 0 000000 011122222211
Q ss_pred -----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcchhhhhhhhhh----HHHHHHHHHHHHHHhhhhheeecchhhh--
Q 003618 559 -----FQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELS----AASSVEAIQQLSEAIAYKVIFHDLSHVL-- 627 (807)
Q Consensus 559 -----L~yi~~qLd~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s----~~~~~~ai~~l~e~ia~rvVF~Dl~~~l-- 627 (807)
-+||-.-..+-.+-|..- .-.++-..|+++ -.-++-+.-++.++ +|.|++.++
T Consensus 498 d~lK~A~y~~~~~sntfeLitse-----------ye~d~~~~lgkTvDgfi~I~~~s~~~l~~~-----i~~d~~pa~~~ 561 (742)
T COG5173 498 DGLKIAQYITSLPSNTFELITSE-----------YENDEVKELGKTVDGFIDILKASNTFLAEF-----IIYDCQPAIDK 561 (742)
T ss_pred CcchHHHHHHhcchhhhhhhhHH-----------HHHHHHHHhcccchhHHHHHhhhhHHHHHH-----HHHhhhhhHHH
Confidence 123222222221211100 011223333322 22223345555555 455777543
Q ss_pred --hhhcccCCCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccch--HHHHHH
Q 003618 628 --WDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDS--DIIEED 703 (807)
Q Consensus 628 --~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~--~~leeD 703 (807)
-+.-|.|.+. .-+.+.|+..|.-+-....+-+...++-++--+.+=+||+.| |-.|+|-.+++ +-|..|
T Consensus 562 iF~~~Wy~gS~~----k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l---~~k~a~~~~~na~~~lksD 634 (742)
T COG5173 562 IFTDEWYGGSVT----KVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQL---GRKRASIAEENASRTLKSD 634 (742)
T ss_pred hcCccccccchH----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhcchhHHHHHHHH
Confidence 4456666554 455666666666666666666677778888888877888877 45788888887 567889
Q ss_pred HHHHHHhcccCCCCCcHHHHHHhHHhHhhhccccccChHHHHHHHHHHH
Q 003618 704 FKFLCDLFWSNGDGLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLT 752 (807)
Q Consensus 704 l~~LK~~F~a~GeGLp~~~vek~~~~v~~vL~L~~~~Td~LIe~f~~~~ 752 (807)
+..+-+.|-.-|+| +-+.....++..++++|+...+.++-.+.+.-
T Consensus 635 ~~~~y~~f~~y~d~---e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~l 680 (742)
T COG5173 635 HTKLYEMFSGYGDP---EDVKTTLSPILKIIPLMDTRNDDLFIVEVKSL 680 (742)
T ss_pred HHHHHHHHHhhCCH---HHHHHHHHHHHHHHcccccCCchHHHHHHHHH
Confidence 99999999877764 33444556788888888766555544444443
No 13
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=74.99 E-value=6.6 Score=39.51 Aligned_cols=97 Identities=19% Similarity=0.322 Sum_probs=69.2
Q ss_pred ccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcccCCCC
Q 003618 638 SSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCDLFWSNGDG 717 (807)
Q Consensus 638 ~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~GeG 717 (807)
..|+..-|+-|..-|.++++++--.+++.=|+-+|..+++. +-+=|.|...|.-||+|.|+-
T Consensus 70 ht~VlEkLPdL~r~LPTlASvLrrKvkN~~Ir~vwesvLee------------------~GLqE~dv~aLCtFfiahgnk 131 (196)
T PF15080_consen 70 HTRVLEKLPDLVRGLPTLASVLRRKVKNKRIRVVWESVLEE------------------CGLQEGDVTALCTFFIAHGNK 131 (196)
T ss_pred HHHHHHHhhHHHhCcchHHHHHHHHhhchHHHHHHHHHHHH------------------cCCCcccHHHHHHHHHHhcch
Confidence 56788888999999999999999999999999999987654 334567789999999999963
Q ss_pred ---CcHHHHHHhHHhHhhhccccccChHHHHHHHHHHHH
Q 003618 718 ---LPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLTL 753 (807)
Q Consensus 718 ---Lp~~~vek~~~~v~~vL~L~~~~Td~LIe~f~~~~~ 753 (807)
.+..+-.-.+..+.-.+.-|-. -..|=+-+.++.+
T Consensus 132 aehy~a~~R~~yi~dv~~mItnmVk-Nqalq~~llrAvq 169 (196)
T PF15080_consen 132 AEHYAAKVRQMYIRDVTFMITNMVK-NQALQDGLLRAVQ 169 (196)
T ss_pred HhHhHHHHHHHHHhhHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 2444444445555444444432 2334455666654
No 14
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.71 E-value=1.7e+02 Score=35.27 Aligned_cols=45 Identities=20% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCCcccch-hHHHHHHHHHHHH
Q 003618 443 ESIAPSAVEVLRTIDETMEAFFMLPIPMHSVL-LPELISGLDGCLQ 487 (807)
Q Consensus 443 e~~S~SVVDvFr~i~etvd~ff~L~~p~~~~~-l~~L~~gi~~~lq 487 (807)
..-|.++|--||.=..+++...+.++|.+-.+ ++.++..++.++-
T Consensus 351 tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLt 396 (705)
T KOG2307|consen 351 TCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALT 396 (705)
T ss_pred cCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcC
Confidence 44577889999999999999999999987555 7888888888775
No 15
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=62.24 E-value=52 Score=35.24 Aligned_cols=156 Identities=15% Similarity=0.248 Sum_probs=92.2
Q ss_pred CcccceeecccHHHHHHHHHHHHHHHhhhhccCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHhhhhheeecchh--
Q 003618 548 GVPQLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDLSH-- 625 (807)
Q Consensus 548 ~~~~lCVrLNnL~yi~~qLd~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s~~~~~~ai~~l~e~ia~rvVF~Dl~~-- 625 (807)
|+++=+|-.-++-++-.+++.+...+..-+... ..+.+...|..+-+++.+--..+...+|.+++ |+..
T Consensus 3 gL~eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~-------~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l--~~~~i~ 73 (234)
T PF10474_consen 3 GLAERIVAVESLSFLARQLESLRPYLESLLPPN-------KRDFLEQFYSQTVSAVPDLREPIYKCVASRLL--DLEQIL 73 (234)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHH
Confidence 345558888899999999999988775543221 23456777777777777777777666666653 3222
Q ss_pred -----hhhhhcccCCCCccchhhhHHHHHHHHHHHHhhh-hHhhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCccchH
Q 003618 626 -----VLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTV-HDRVRTRVITDIMKASFEGFLLVLLAGGPS-RAFTHQDSD 698 (807)
Q Consensus 626 -----~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l-~d~~r~~vv~~l~kA~~~~~l~VLL~GGps-R~Fs~~D~~ 698 (807)
+-||.-..+.-.+.-+..+++.+...=+.+-++. .-++.+.+.+.+|..++..+..+|+.|=.. |--|...-+
T Consensus 74 ~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRa 153 (234)
T PF10474_consen 74 NSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRA 153 (234)
T ss_pred HHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHH
Confidence 2233333322223334444443333322221111 122234566677777777777777665443 566777778
Q ss_pred HHHHHHHHHHHhcc
Q 003618 699 IIEEDFKFLCDLFW 712 (807)
Q Consensus 699 ~leeDl~~LK~~F~ 712 (807)
.|.-|+..+..-+-
T Consensus 154 lM~lD~q~~~~~le 167 (234)
T PF10474_consen 154 LMQLDFQQLQNKLE 167 (234)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877763
No 16
>PF14923 CCDC142: Coiled-coil protein 142
Probab=61.28 E-value=12 Score=43.72 Aligned_cols=103 Identities=20% Similarity=0.290 Sum_probs=78.9
Q ss_pred hcccCCCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHH
Q 003618 630 GLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCD 709 (807)
Q Consensus 630 ~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~~leeDl~~LK~ 709 (807)
+.|++.+-+..+.|+++.+ ..+.++++--+++.+++|.++++|.-|+--+. -||-.-.--+..||..+++
T Consensus 275 S~Yv~~~v~~vl~PVl~g~--------q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kI--KFS~~GAlQL~~DF~~Vr~ 344 (450)
T PF14923_consen 275 SEYVEYVVETVLEPVLQGV--------QGLPPEAQIPALSQALTAMLEAWLDHILMHKI--KFSLQGALQLRQDFGYVRD 344 (450)
T ss_pred cHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHHHHHHHHHHHHccc--eeeHHHHHHHHHHHHHHHH
Confidence 3455544455555555543 34578888999999999999999999986533 4888888899999999999
Q ss_pred hcccCCCCCcHHHHHHh-----HHhHhhhcc-ccccChH
Q 003618 710 LFWSNGDGLPADLIDKF-----STSVRSILP-LYHNDTE 742 (807)
Q Consensus 710 ~F~a~GeGLp~~~vek~-----~~~v~~vL~-L~~~~Td 742 (807)
+-..+--||..++.++- .+.+.+|+. |+.|+.+
T Consensus 345 wl~~e~~~Ls~e~rq~Ll~l~v~r~~dgv~~lLlqqP~~ 383 (450)
T PF14923_consen 345 WLESECSGLSPELRQTLLSLEVFRRCDGVGLLLLQQPGP 383 (450)
T ss_pred HHHhhhccCCHHHHHHHhccHHHHHHHHHHHHHhcCCCC
Confidence 99999999999988873 477888888 5555543
No 17
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=53.53 E-value=3.2e+02 Score=32.33 Aligned_cols=170 Identities=12% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhhccc-------cccchhccchhHHHHHHHHHHHHHHhHHHHHhhhhccC-hhHHhhcch
Q 003618 298 PNHLPVLSILAQDVTELAFDEKTIF-------SPILKRWHPLAAGVAVATLHSCYGNELRQFVSGITELT-PDAIQVLLA 369 (807)
Q Consensus 298 ~~~~~~L~~LA~~~~~la~~e~~~f-------sPiL~~~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~~lt-~~~~~vl~a 369 (807)
++....|..+.+|+..+-..=.+.+ .|+.+.++|.|+++.- .++++ ..++..+..+..+- +.....-.+
T Consensus 353 ~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w--~r~L~-~ri~~~~~~~~~~~g~~~~~~~~~ 429 (579)
T PF08385_consen 353 EKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIW--ARQLE-RRIKEPMQRLKSLLGPDWLDSPEG 429 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHH--HHHHH-HHHhHHHHHHHHhccchhhcchhH
Confidence 3445677778888887744211222 3777778887775542 23333 34555555554322 111111111
Q ss_pred hHHHHHHHHHHhhhccccCCCCcccccccCCCcchhhHhHHHHHHHHHHHHHHHHHHHHhhhh-ccccccCCCCCCCCCc
Q 003618 370 ADKLEKNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQ-QEVWNARANKESIAPS 448 (807)
Q Consensus 370 Ad~LEk~L~~i~~e~s~~~~dgg~~~vr~m~Py~ie~~~~~~v~~Wi~~~~~k~~ewv~raiq-~E~W~P~s~~e~~S~S 448 (807)
..-.++|- .+ . =.++.+.......|+++........+++.+= ...=....=...|.+.
T Consensus 430 ~~~~~~~~-~l---------------~-----~~l~~~e~~~~~~W~~~i~~~~~~~L~~~ll~~~~~~~~~l~VNfd~~ 488 (579)
T PF08385_consen 430 KELKQKYN-EL---------------L-----KKLDEYEKEIFEEWLNEIESNINSSLSQPLLKRRSDENGRLVVNFDPE 488 (579)
T ss_pred HHHHHHHH-HH---------------H-----HHHHHHHHHHHHHHHHHHHHHHhhccccceeeeccCCCceEEEeCCHH
Confidence 11111210 00 0 0255566778889999888888666665554 1111111122568888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCc-------ccchhHHHHHHHHHHHHHHHHHH
Q 003618 449 AVEVLRTIDETMEAFFMLPIPM-------HSVLLPELISGLDGCLQHYVLKA 493 (807)
Q Consensus 449 VVDvFr~i~etvd~ff~L~~p~-------~~~~l~~L~~gi~~~lq~Y~~~v 493 (807)
++.+++=++.---. ++++|. ...-+..++..+..+++.|-..+
T Consensus 489 l~~l~rEvr~l~~l--g~~iP~~~~~~~~~~~~l~~~~~~L~~~~~~yn~i~ 538 (579)
T PF08385_consen 489 LLTLLREVRYLQSL--GFEIPEEILELYEQAEKLYPYAESLQEIVRFYNSII 538 (579)
T ss_pred HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877654333 556663 22335667777777777777666
No 18
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=50.06 E-value=4.5e+02 Score=30.22 Aligned_cols=115 Identities=15% Similarity=0.257 Sum_probs=76.0
Q ss_pred ccccccc-hhccchhHHHHHHHHHHHHHHhHHHHHhhhh-ccC-hhHHhhcchhHHHHHHHHHHhhhccccC--CCCccc
Q 003618 320 TIFSPIL-KRWHPLAAGVAVATLHSCYGNELRQFVSGIT-ELT-PDAIQVLLAADKLEKNLVQIAVEDSVDS--EDGGKS 394 (807)
Q Consensus 320 ~~fsPiL-~~~~p~a~~vaA~~Lh~~yg~dLk~~L~~~~-~lt-~~~~~vl~aAd~LEk~L~~i~~e~s~~~--~dgg~~ 394 (807)
+.|+.+| ..|+ .+...| ..+..+=-.||...|++.. +++ .-.+..|+..-.+|++|........... ..++..
T Consensus 262 ~~~~~iFP~~W~-v~~~L~-~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e 339 (383)
T PF04100_consen 262 EKFANIFPPSWR-VPERLC-VEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKE 339 (383)
T ss_pred hhccccCCCcCc-HHHHHH-HHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 3466665 4588 666555 3555555588999996542 244 4556777888999999986652111000 000000
Q ss_pred ccccCCCcc--hhhHhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 003618 395 IIQEMPPYE--AEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVW 436 (807)
Q Consensus 395 ~vr~m~Py~--ie~~~~~~v~~Wi~~~~~k~~ewv~raiq~E~W 436 (807)
--..-.||. |.+.|.||+.-||+.++..+.+.+.+.++.++|
T Consensus 340 ~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 340 MKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred ccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 000002443 999999999999999999999999999999999
No 19
>PHA00781 hypothetical protein
Probab=32.11 E-value=61 Score=26.81 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=30.7
Q ss_pred cCCcCcHHHHHHHHHhhccCCCCcchhhhHHHHHHhHHhh
Q 003618 103 EGFPLNLRIYRILLEACFDVNEPTSVIEEVDEVLELIKKT 142 (807)
Q Consensus 103 dg~plN~~ly~~LL~~~FD~~de~~v~~E~dE~lel~k~t 142 (807)
--||-|--||+.|+.-|-|-.-|-++-|-| -.||++|..
T Consensus 11 KKF~~t~EL~eRl~svIH~YDGEISl~EAv-G~LEllK~~ 49 (59)
T PHA00781 11 KKFPITQELYERLESVIHDYDGEISLCEAI-GTLELLKQS 49 (59)
T ss_pred ccCcchHHHHHHHHHHHHHhcccchHHHHH-hHHHHHHHH
Confidence 469999999999999999976677655444 588988753
No 20
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=29.70 E-value=3.5e+02 Score=26.03 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=60.7
Q ss_pred hhhhcccCCCCccchhhh-HHHHHHHHHHHHh---hhhHhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 003618 627 LWDGLYVGEVSSSRIEPF-LQELEHYLEIISS---TVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEE 702 (807)
Q Consensus 627 l~~~LY~g~V~~~RI~pl-L~~Ld~~L~~l~~---~l~d~~r~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~~lee 702 (807)
++++--.+++++..|+.+ -+.+-.++..+|+ -++...|..+++|+= |++.-+.-| |+|=-.+.=|++|+..|+|
T Consensus 21 lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~D-aiv~DLeEV-La~V~~~~aT~eQ~~Fi~E 98 (113)
T PF12290_consen 21 LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREAD-AIVYDLEEV-LASVWNQKATNEQIAFIEE 98 (113)
T ss_pred HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH-HHHHHHHHH-HHHHHcCCCCHHHHHHHHH
Confidence 445344455556566444 6778888988887 568889999999873 333334433 4555567779999999999
Q ss_pred HHHHHHHhccc
Q 003618 703 DFKFLCDLFWS 713 (807)
Q Consensus 703 Dl~~LK~~F~a 713 (807)
=.-.+|++|-+
T Consensus 99 f~~LiKNLFD~ 109 (113)
T PF12290_consen 99 FIGLIKNLFDS 109 (113)
T ss_pred HHHHHHHhHHH
Confidence 99999999954
No 21
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.82 E-value=1.3e+03 Score=29.26 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhh-eeecchhhhhhhcccCCCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHH
Q 003618 593 EKRFELSAASSVEAIQQLSEAIAYKV-IFHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDI 671 (807)
Q Consensus 593 ~~~F~~s~~~~~~ai~~l~e~ia~rv-VF~Dl~~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l 671 (807)
+..|-.+|. .|-.++.+.|--|+ .|..+-..-|..--+.+..+.=|..++.||+.........+.-.+...|..+.
T Consensus 586 s~~l~~sr~---~Ae~~l~~~i~~Kid~f~~l~~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~v~~~v~~~~ 662 (800)
T KOG2176|consen 586 STKLLASRK---LAETELIELIKLKIDDFLELIEYDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYKVAQLVCLRE 662 (800)
T ss_pred chhhhhhhh---hHHHHHHHHHhhhhHHHHHHhhccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 455555655 44444555544443 23333333344444445557778999999999999999999988889998888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcccCC--CCCcHHHHHHhHHhHhhhcc-ccccChHHHHHHH
Q 003618 672 MKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCDLFWSNG--DGLPADLIDKFSTSVRSILP-LYHNDTESLIEEF 748 (807)
Q Consensus 672 ~kA~~~~~l~VLL~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~G--eGLp~~~vek~~~~v~~vL~-L~~~~Td~LIe~f 748 (807)
+...-.++.-.+++.-+.|.. -.-+.-++-|+..+. .|.+.+ .|....+..+..-.+++.++ |+.++-|.-.+.+
T Consensus 663 ~~his~~iv~llldd~ik~is-~~Ai~~fnlDv~~lE-sfa~~~p~~~~~~~~~~~~fielrQlinLL~~~~~e~y~~~~ 740 (800)
T KOG2176|consen 663 LDHISTSIVGLLLDDSIKQIS-MGAITNFNLDVNYLE-SFAASPPVPPNQEGVLAKAFIELRQLINLLLLSDWETYLNDY 740 (800)
T ss_pred HHHHHHHHHHHHhCchHHHHH-HHHHHccchhHHHHH-HhccCCCCCCcccchhHHHHHHHHHHHHHHHhcCHHHhhCch
Confidence 888888888888876666554 333555566766654 455553 33444555555556667777 5555555444444
Q ss_pred HH
Q 003618 749 KR 750 (807)
Q Consensus 749 ~~ 750 (807)
.+
T Consensus 741 ~r 742 (800)
T KOG2176|consen 741 GR 742 (800)
T ss_pred hh
Confidence 33
No 22
>PF12854 PPR_1: PPR repeat
Probab=28.57 E-value=74 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=24.2
Q ss_pred cCCcCcHHHHHHHHHhhccCCCCcchhhhHHHHHHhH
Q 003618 103 EGFPLNLRIYRILLEACFDVNEPTSVIEEVDEVLELI 139 (807)
Q Consensus 103 dg~plN~~ly~~LL~~~FD~~de~~v~~E~dE~lel~ 139 (807)
.|+++|+..|..|+.+.-. +|. +||+-++++-|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck---~G~-~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCK---AGR-VDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHH---CCC-HHHHHHHHHhC
Confidence 4899999999999998654 343 56666666544
No 23
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.86 E-value=2.7e+02 Score=34.82 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=36.7
Q ss_pred hhcccCCCCccchhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH
Q 003618 629 DGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKAS 675 (807)
Q Consensus 629 ~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~ 675 (807)
|.||-+.+.+..-+..=..|-++|..++.++..-+ +.++.|||+-.
T Consensus 750 DRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIl-P~LaeEvwq~l 795 (937)
T KOG0433|consen 750 DRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPIL-PHLAEEVWQHL 795 (937)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHhC
Confidence 56999999887767777778888888888776555 78888999984
No 24
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=27.48 E-value=3.2e+02 Score=30.51 Aligned_cols=45 Identities=11% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhccccccCCCCCCCCCcHHHHHHHHHHHHHH-HhcCC
Q 003618 421 DRLKEWVCRNLQQEVWNARANKESIAPSAVEVLRTIDETMEA-FFMLP 467 (807)
Q Consensus 421 ~k~~ewv~raiq~E~W~P~s~~e~~S~SVVDvFr~i~etvd~-ff~L~ 467 (807)
.|+-+.+ ...+- +|.|......-|..+.|+..-++-+++. |-.||
T Consensus 155 ~KIDe~l-ela~y-DW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP 200 (311)
T PF04091_consen 155 SKIDEFL-ELAEY-DWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLP 200 (311)
T ss_dssp HHHHHHH-TT--T-T--------S--HHHHHHHHHHHHHHHTTTTTSH
T ss_pred HHHHHHH-hhccc-ceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455 22223 5999998888899999999999999955 67777
No 25
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=2.7e+02 Score=28.90 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHhHHhhhhhh---------ccchHHHHHHHHHHhHHHHhhcCccchhHHHHHHHHHHHHHHHhhhhcCcchHHHHHHHH
Q 003618 136 LELIKKTWEIL---------GVNQMLHNLCFGWILFHRYVSTGQVESDLLFAANNLLMEIEKDAKAAKDADYSKILSSIL 206 (807)
Q Consensus 136 lel~k~tW~~L---------GI~~~~Hn~cf~WvlF~q~v~tgq~e~~Ll~~a~~~l~~v~~dak~~~d~~~~~~l~s~l 206 (807)
.+.+=.-|+.| |++-.=|..=++|++++.|+.|.-++...+.--+..+---.-+.+..-|+.|.
T Consensus 17 vg~il~~W~al~~AVEng~GG~dsqek~~w~~~~~~d~~~~~~dV~~~eieE~L~~~l~~EFnt~~eDDS~~~------- 89 (184)
T KOG4032|consen 17 VGKILNSWPALRLAVENGWGGRDSQEKAKWITGVVVDYFTMNKDVKAREIEELLLELLGDEFNTKVEDDSLPE------- 89 (184)
T ss_pred HHHHHHccHHHHHHHHhccCCccHHHHHHHHHhhHhhhcccccchhHHHHHHHHHHHHHHHhhccccCCCHHH-------
Confidence 34555568887 67777788889999999999999887776655544433222333334455553
Q ss_pred HHHHHHHHHhhhhhhhhhcCCchhhHhHHHHH
Q 003618 207 NTILDWAGQRLRDYHDIFHDDNIDSLETVVSL 238 (807)
Q Consensus 207 ~~i~~W~ekrL~dYH~~f~~~~~~~me~~~~l 238 (807)
+-..|++|-.++.++|...++.+++=
T Consensus 90 ------ia~~L~n~f~~~~~~N~~~ieells~ 115 (184)
T KOG4032|consen 90 ------IAQLLLNLFHDIQNGNYAIIEELLSK 115 (184)
T ss_pred ------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 12356777777888887777766553
No 26
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=4.1e+02 Score=27.84 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhhHhhH-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhcccCCCCC---cHHH
Q 003618 647 ELEHYLEIISSTVHDRVR-TRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCDLFWSNGDGL---PADL 722 (807)
Q Consensus 647 ~Ld~~L~~l~~~l~d~~r-~~vv~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~~leeDl~~LK~~F~a~GeGL---p~~~ 722 (807)
++.-+-..+|+...+++| ..--.|+|+|.|. ||..+++-. .--+...|+--+-+=+-.+-.+|+++||.+ |.++
T Consensus 48 c~q~Vhk~lc~~kkc~iRl~Y~W~ELW~aL~n-~L~Flmsne-~~llak~dif~La~lIldlf~mfIs~GDafl~~pde~ 125 (252)
T KOG4654|consen 48 CFQFVHKALCSLKKCGIRLEYHWLELWRALFN-FLDFLMSNE-INLLAKEDIFRLAELILDLFAMFISNGDAFLIRPDEL 125 (252)
T ss_pred HHHHHHHHHHHHHhhcceeeeHHHHHHHHHHH-HHHHHHHhH-hhhcchhhHHHHHHHHHHHHHHHHhCCCeeeeCchHH
Confidence 334455667777777777 5566799999874 333332111 111224455555555566778999999996 7777
Q ss_pred HHHhHHhHh
Q 003618 723 IDKFSTSVR 731 (807)
Q Consensus 723 vek~~~~v~ 731 (807)
+|=.++-++
T Consensus 126 ddLfYeii~ 134 (252)
T KOG4654|consen 126 DDLFYEIIH 134 (252)
T ss_pred HHHHHHHHH
Confidence 776665554
No 27
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=20.40 E-value=69 Score=31.77 Aligned_cols=26 Identities=31% Similarity=0.681 Sum_probs=24.0
Q ss_pred chhhhHHHHHHhHHhhhhhhccchHH
Q 003618 127 SVIEEVDEVLELIKKTWEILGVNQML 152 (807)
Q Consensus 127 ~v~~E~dE~lel~k~tW~~LGI~~~~ 152 (807)
.+..|++|+|.+--+.|.-||+|+.|
T Consensus 90 eLn~EAe~~L~lal~LWdSL~Lne~I 115 (148)
T PF09201_consen 90 ELNQEAEQTLDLALKLWDSLGLNESI 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcCccHHH
Confidence 45689999999999999999999998
No 28
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=20.17 E-value=5.1e+02 Score=23.31 Aligned_cols=61 Identities=23% Similarity=0.285 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHh----cCCCCCCCCccchHHHH
Q 003618 641 IEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLL----AGGPSRAFTHQDSDIIE 701 (807)
Q Consensus 641 I~plL~~Ld~~L~~l~~~l~d~~r~~vv~~l~kA~~~~~l~VLL----~GGpsR~Fs~~D~~~le 701 (807)
++.+...+..+..+.+..+.|.+...|+..+.+.+-+.+...++ ..|+...+-..|..+.+
T Consensus 6 ~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~i~~ 70 (92)
T PF02212_consen 6 VEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPEIAE 70 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHHHHH
Confidence 46677888999999999999999988888999988888777663 23335555555555443
No 29
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain. The CD contains various predicted bacterial and phage integrase/recombinase sequences for which not much experimental characterization is available.
Probab=20.12 E-value=1.3e+02 Score=29.87 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhh-hheeecchhhhhhhcccCCCCccchhhhHHHHHHHHHHHHhhhhHhh
Q 003618 600 AASSVEAIQQLSEAIAY-KVIFHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRV 663 (807)
Q Consensus 600 ~~~~~~ai~~l~e~ia~-rvVF~Dl~~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~ 663 (807)
..++...++++++-++. .+.++|+||.|...++..++.-..|..+|.+=+......+..+.+..
T Consensus 106 ~~~~~~~~k~~~~~~gi~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~~~~~ 170 (180)
T cd01186 106 RQQAYRILKKAAEQVGIDNIGTHTLRKTFGYHYYKQTKDIALLMEIFNHSSPAITLRYIGINQDE 170 (180)
T ss_pred HHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHcCCCHHHHHHHhCCCCHHHHHHHhccCHHH
Confidence 45566667777777765 47899999999988888887666666666665555544444444443
Done!