Query 003618
Match_columns 807
No_of_seqs 157 out of 182
Neff 5.6
Searched_HMMs 13730
Date Tue Mar 26 18:43:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003618.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1666-1670//hhsearch_scop/003618hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bo9a_ a.65.1.1 (A:) Annexin 14.9 21 0.0015 11.9 0.6 27 775-802 19-45 (73)
2 d2dkya1 a.60.1.3 (A:8-85) Dele 6.7 39 0.0029 10.1 -0.5 21 97-117 18-40 (78)
3 d2g9na1 c.37.1.19 (A:21-238) I 5.4 64 0.0047 8.6 1.8 13 553-565 133-145 (218)
4 d2fb5a1 d.320.1.1 (A:5-205) Hy 5.2 50 0.0037 9.4 -0.6 15 599-613 162-176 (201)
5 d2gysa1 b.1.2.1 (A:1-103) Comm 4.0 78 0.0057 8.1 -0.4 13 546-558 65-77 (103)
6 d1noga_ a.25.2.2 (A:) Hypothet 3.8 99 0.0072 7.4 8.8 17 690-706 54-70 (149)
7 d1s2ma1 c.37.1.19 (A:46-251) P 3.8 1E+02 0.0073 7.4 0.4 28 110-137 129-157 (206)
8 d2ieca1 d.316.1.1 (A:11-123) H 3.3 1.2E+02 0.0085 6.9 0.8 8 161-168 18-25 (113)
9 d1b0xa_ a.60.1.2 (A:) EphA4 re 3.3 41 0.003 10.0 -2.4 35 204-238 2-37 (72)
10 d1orja_ a.24.19.1 (A:) Flagell 3.3 1.2E+02 0.0086 6.9 3.6 38 110-147 83-120 (126)
No 1
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.94 E-value=21 Score=11.90 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 9997641110025698148899999707
Q 003618 775 PTEPNTVLRVLCYRSDETAVKFLKKAYN 802 (807)
Q Consensus 775 ~~d~ntiLRVLchR~D~~AskFLKk~~~ 802 (807)
++|..+|.||||+|+...- .-+++.|+
T Consensus 19 Gtde~~li~Il~~rs~~~l-~~i~~~Y~ 45 (73)
T d1bo9a_ 19 GVDEATIIDILTKRNNAQR-QQIKAAYL 45 (73)
T ss_dssp SCCSSSHHHHHHHSCSTTH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHCCHHHH-HHHHHHHH
T ss_conf 9888999898984899999-99999999
No 2
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.69 E-value=39 Score=10.10 Aligned_cols=21 Identities=43% Similarity=0.942 Sum_probs=12.0
Q ss_pred CCCCC--CCCCCCCHHHHHHHHH
Q ss_conf 74424--5688572999999998
Q 003618 97 EKCHW--AEGFPLNLRIYRILLE 117 (807)
Q Consensus 97 e~chW--adg~plN~~ly~~LL~ 117 (807)
|.|-| |.|||--..|||...+
T Consensus 18 eAC~WLraaGFpqYAqlyEd~~F 40 (78)
T d2dkya1 18 EACDWLRATGFPQYAQLYEDFLF 40 (78)
T ss_dssp HHHHHHHHHTCTTHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 99999998388489998651378
No 3
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.36 E-value=64 Score=8.65 Aligned_cols=13 Identities=8% Similarity=-0.115 Sum_probs=5.5
Q ss_pred EEECCCHHHHHHH
Q ss_conf 2211219999999
Q 003618 553 CCRINTFQHIRKE 565 (807)
Q Consensus 553 CVrLNnL~yi~~q 565 (807)
.|.+.|-..+...
T Consensus 133 ~IvV~TP~rl~~~ 145 (218)
T d2g9na1 133 HIIVGTPGRVFDM 145 (218)
T ss_dssp SEEEECHHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 7999678157778
No 4
>d2fb5a1 d.320.1.1 (A:5-205) Hypothetical protein BC4920 (YojJ) {Bacillus cereus [TaxId: 1396]}
Probab=5.22 E-value=50 Score=9.37 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 599999999999998
Q 003618 599 SAASSVEAIQQLSEA 613 (807)
Q Consensus 599 s~~~~~~ai~~l~e~ 613 (807)
+|..+..++-+.++.
T Consensus 162 tRHRAA~gise~tda 176 (201)
T d2fb5a1 162 TRHRAAIGLSEKSDA 176 (201)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 388998799987198
No 5
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.03 E-value=78 Score=8.09 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=7.9
Q ss_pred CCCCCCCEEECCC
Q ss_conf 8886531221121
Q 003618 546 SFGVPQLCCRINT 558 (807)
Q Consensus 546 s~~~~~lCVrLNn 558 (807)
+.-.|+-||.=++
T Consensus 65 ~~CvPrrCVipy~ 77 (103)
T d2gysa1 65 PRCVPRRCVIPCQ 77 (103)
T ss_dssp SSEEEEEEEEECS
T ss_pred CCCCCCEEEEECH
T ss_conf 8875723886532
No 6
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=3.79 E-value=99 Score=7.38 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=6.4
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 98892053799999999
Q 003618 690 RAFTHQDSDIIEEDFKF 706 (807)
Q Consensus 690 R~Fs~~D~~iiEeDl~~ 706 (807)
+.++..+++.+|++++.
T Consensus 54 ~~i~~~~v~~LE~~id~ 70 (149)
T d1noga_ 54 RTVTREMIDYLEARVKE 70 (149)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 21548999999999998
No 7
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.77 E-value=1e+02 Score=7.37 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCC-CCCHHHHHHHHHH
Q ss_conf 999999985115789-9641564999999
Q 003618 110 RIYRILLEACFDVNE-PTSVIEEVDEVLE 137 (807)
Q Consensus 110 ~ly~~LL~~~FD~~d-e~~v~~E~dE~le 137 (807)
+|+..+-..-++..+ ...|+||+|.+++
T Consensus 129 ~l~~~l~~~~~~l~~l~~lV~DEaD~l~~ 157 (206)
T d1s2ma1 129 RVLDLASRKVADLSDCSLFIMDEADKMLS 157 (206)
T ss_dssp HHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred CCCCCCCCCEEECCCCEEEEEECHHHHHH
T ss_conf 33333432101012220777622134430
No 8
>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786 {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.31 E-value=1.2e+02 Score=6.90 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=0.0
Q ss_pred HHHHHHHC
Q ss_conf 67877614
Q 003618 161 LFHRYVST 168 (807)
Q Consensus 161 lF~q~v~t 168 (807)
||||||.|
T Consensus 18 LyHQF~Gt 25 (113)
T d2ieca1 18 IYHQFCGT 25 (113)
T ss_dssp HHHHHTTC
T ss_pred HHEEECCC
T ss_conf 22020276
No 9
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.29 E-value=41 Score=9.97 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999989998977-46555532057850237689999
Q 003618 204 SILNTILDWAGQ-RLRDYHDIFHDDNIDSLETVVSL 238 (807)
Q Consensus 204 s~l~~i~~W~ek-rL~dYH~~f~~~~~~~me~~~~l 238 (807)
|.+.++..|.+. .|..|...|.+..+..++.+..+
T Consensus 2 s~v~sV~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l 37 (72)
T d1b0xa_ 2 SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHM 37 (72)
T ss_dssp CSSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHC
T ss_conf 864259999987870999999988599848999787
No 10
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=3.28 E-value=1.2e+02 Score=6.87 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998511578996415649999996886555215
Q 003618 110 RIYRILLEACFDVNEPTSVIEEVDEVLELIKKTWEILG 147 (807)
Q Consensus 110 ~ly~~LL~~~FD~~de~~v~~E~dE~lel~k~tW~~LG 147 (807)
.||.-+...+........-++|+-++++-|+.+|.-.+
T Consensus 83 ~lY~~~~~~L~~a~~~~~~i~e~~~il~~l~eaW~~i~ 120 (126)
T d1orja_ 83 TIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEVK 120 (126)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999875889999999999999999999999
Done!