Query 003619
Match_columns 807
No_of_seqs 515 out of 3830
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0731 AAA+-type ATPase conta 100.0 4.9E-80 1.1E-84 714.9 30.4 634 39-800 23-669 (774)
2 KOG0734 AAA+-type ATPase conta 100.0 1.5E-79 3.2E-84 675.7 29.9 362 418-800 297-660 (752)
3 COG0465 HflB ATP-dependent Zn 100.0 2.1E-75 4.5E-80 667.1 36.2 413 363-800 95-508 (596)
4 CHL00176 ftsH cell division pr 100.0 3.3E-65 7.1E-70 596.0 41.5 377 405-800 163-541 (638)
5 TIGR01241 FtsH_fam ATP-depende 100.0 8.5E-64 1.8E-68 572.5 41.4 380 403-800 33-412 (495)
6 PRK10733 hflB ATP-dependent me 100.0 2.5E-62 5.4E-67 575.3 41.3 378 405-800 132-511 (644)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.2E-54 7E-59 461.3 25.8 255 415-677 141-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 6.8E-51 1.5E-55 497.4 27.6 307 450-799 1622-1983(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 4.1E-47 8.9E-52 430.4 24.7 255 412-677 421-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.2E-45 4.8E-50 410.9 23.8 250 417-677 503-773 (802)
11 KOG0727 26S proteasome regulat 100.0 4.6E-42 1E-46 352.7 22.5 252 416-675 146-398 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 2.2E-42 4.7E-47 387.0 21.4 228 418-656 183-414 (802)
13 KOG0728 26S proteasome regulat 100.0 1.1E-41 2.4E-46 349.6 20.5 251 417-675 139-390 (404)
14 KOG0652 26S proteasome regulat 100.0 1.3E-41 2.9E-46 350.5 18.9 252 416-675 162-414 (424)
15 KOG0729 26S proteasome regulat 100.0 1.4E-41 3.1E-46 351.1 18.0 258 414-679 166-424 (435)
16 KOG0726 26S proteasome regulat 100.0 9.5E-42 2.1E-46 355.9 15.4 254 416-677 176-430 (440)
17 KOG0736 Peroxisome assembly fa 100.0 4E-40 8.7E-45 376.3 25.0 252 416-677 663-936 (953)
18 PTZ00454 26S protease regulato 100.0 1.9E-39 4.1E-44 362.2 27.5 253 416-676 136-389 (398)
19 COG1223 Predicted ATPase (AAA+ 100.0 6.8E-40 1.5E-44 338.2 20.7 242 417-673 113-355 (368)
20 PRK03992 proteasome-activating 100.0 3E-38 6.5E-43 352.2 27.0 256 416-679 122-378 (389)
21 KOG0738 AAA+-type ATPase [Post 100.0 9.9E-39 2.1E-43 344.0 22.1 249 415-676 202-472 (491)
22 PTZ00361 26 proteosome regulat 100.0 8.3E-38 1.8E-42 351.8 25.3 252 417-676 175-427 (438)
23 KOG0735 AAA+-type ATPase [Post 100.0 2.2E-37 4.7E-42 351.1 21.9 229 417-656 659-888 (952)
24 COG0464 SpoVK ATPases of the A 100.0 1.5E-36 3.3E-41 347.5 25.5 250 415-675 232-485 (494)
25 TIGR01243 CDC48 AAA family ATP 100.0 1.9E-36 4E-41 361.9 25.9 250 417-676 445-713 (733)
26 TIGR01242 26Sp45 26S proteasom 100.0 1E-35 2.2E-40 328.7 26.8 250 416-673 113-363 (364)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 3.7E-35 8.1E-40 334.6 25.0 243 419-676 222-466 (489)
28 KOG0739 AAA+-type ATPase [Post 100.0 2E-36 4.4E-41 317.0 12.6 229 414-656 122-353 (439)
29 KOG0651 26S proteasome regulat 100.0 2.8E-36 6.2E-41 317.8 13.1 252 416-675 123-375 (388)
30 KOG0737 AAA+-type ATPase [Post 100.0 2.1E-35 4.6E-40 318.3 19.3 229 415-656 82-314 (386)
31 TIGR03689 pup_AAA proteasome A 100.0 1.1E-32 2.5E-37 314.5 24.8 255 415-679 172-484 (512)
32 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-30 4E-35 295.4 22.0 241 420-679 180-422 (693)
33 TIGR01243 CDC48 AAA family ATP 100.0 5.6E-30 1.2E-34 306.3 26.8 247 419-676 172-438 (733)
34 KOG0741 AAA+-type ATPase [Post 100.0 5.4E-31 1.2E-35 291.8 14.4 251 417-676 211-493 (744)
35 KOG0732 AAA+-type ATPase conta 100.0 3.3E-30 7.2E-35 306.9 19.1 250 419-679 259-531 (1080)
36 PLN00020 ribulose bisphosphate 100.0 1.9E-29 4.1E-34 274.8 22.9 262 421-705 111-395 (413)
37 KOG0740 AAA+-type ATPase [Post 100.0 2.1E-28 4.6E-33 271.7 15.8 247 415-675 143-406 (428)
38 PF01434 Peptidase_M41: Peptid 99.9 5.5E-25 1.2E-29 227.1 10.8 129 662-800 1-131 (213)
39 TIGR02881 spore_V_K stage V sp 99.8 1.1E-19 2.3E-24 192.6 20.8 212 423-655 4-240 (261)
40 CHL00181 cbbX CbbX; Provisiona 99.8 7.1E-20 1.5E-24 197.2 19.7 211 425-655 23-256 (287)
41 TIGR02880 cbbX_cfxQ probable R 99.8 1.4E-19 3.1E-24 194.5 18.0 210 426-655 23-255 (284)
42 PF00004 AAA: ATPase family as 99.8 7.5E-20 1.6E-24 170.6 12.2 130 461-602 1-132 (132)
43 KOG0742 AAA+-type ATPase [Post 99.8 7.6E-19 1.6E-23 191.3 21.6 233 420-671 350-610 (630)
44 KOG0743 AAA+-type ATPase [Post 99.8 8E-19 1.7E-23 194.8 16.0 210 422-645 198-412 (457)
45 KOG0744 AAA+-type ATPase [Post 99.8 2.6E-18 5.7E-23 183.2 14.5 238 424-672 141-413 (423)
46 PRK00080 ruvB Holliday junctio 99.8 2.1E-17 4.6E-22 180.6 19.8 217 420-673 20-250 (328)
47 TIGR00635 ruvB Holliday juncti 99.8 2E-17 4.3E-22 177.9 19.1 214 423-673 2-229 (305)
48 PF05496 RuvB_N: Holliday junc 99.8 1.7E-17 3.7E-22 171.7 16.8 194 420-653 19-229 (233)
49 KOG0735 AAA+-type ATPase [Post 99.7 7.8E-17 1.7E-21 184.9 22.3 265 425-706 408-684 (952)
50 KOG0736 Peroxisome assembly fa 99.7 2.3E-17 5.1E-22 190.6 17.9 208 454-675 427-655 (953)
51 COG0464 SpoVK ATPases of the A 99.7 4.7E-16 1E-20 178.8 22.3 219 444-675 4-228 (494)
52 TIGR02902 spore_lonB ATP-depen 99.7 5.2E-16 1.1E-20 180.2 19.9 262 374-674 6-333 (531)
53 COG2255 RuvB Holliday junction 99.7 4.8E-16 1E-20 164.1 17.7 216 420-675 21-253 (332)
54 TIGR02639 ClpA ATP-dependent C 99.7 2.7E-16 5.8E-21 188.9 17.5 222 422-675 179-431 (731)
55 TIGR00763 lon ATP-dependent pr 99.7 3.8E-16 8.2E-21 188.7 16.0 164 425-616 320-505 (775)
56 TIGR00362 DnaA chromosomal rep 99.7 3.3E-15 7.2E-20 167.9 20.6 240 420-705 105-358 (405)
57 PRK11034 clpA ATP-dependent Cl 99.7 1.1E-15 2.4E-20 183.1 17.2 223 423-677 184-437 (758)
58 PRK00149 dnaA chromosomal repl 99.7 3E-15 6.5E-20 170.6 19.3 221 419-674 116-350 (450)
59 TIGR02928 orc1/cdc6 family rep 99.6 1.2E-14 2.6E-19 160.0 22.9 222 422-673 12-274 (365)
60 COG2256 MGS1 ATPase related to 99.6 1.3E-15 2.9E-20 167.2 15.1 205 420-675 19-240 (436)
61 PRK04195 replication factor C 99.6 8.4E-15 1.8E-19 168.4 19.2 209 416-669 5-221 (482)
62 PRK14088 dnaA chromosomal repl 99.6 1.1E-14 2.3E-19 165.7 18.2 222 419-674 99-333 (440)
63 PRK14956 DNA polymerase III su 99.6 1.5E-14 3.4E-19 164.5 18.9 205 417-670 10-243 (484)
64 PRK14962 DNA polymerase III su 99.6 1.9E-14 4.1E-19 164.8 19.4 206 418-672 7-241 (472)
65 PRK00411 cdc6 cell division co 99.6 7.4E-14 1.6E-18 155.4 23.3 224 422-674 27-283 (394)
66 PRK06893 DNA replication initi 99.6 4.3E-14 9.4E-19 147.4 19.2 211 419-670 10-227 (229)
67 COG0466 Lon ATP-dependent Lon 99.6 1.2E-14 2.6E-19 168.4 16.2 234 425-673 323-584 (782)
68 PRK14961 DNA polymerase III su 99.6 4.1E-14 8.8E-19 157.2 19.9 206 417-671 8-242 (363)
69 PRK13342 recombination factor 99.6 4.1E-14 9E-19 159.7 19.5 201 420-674 7-220 (413)
70 PRK12323 DNA polymerase III su 99.6 1.7E-14 3.7E-19 168.1 16.3 203 417-668 8-244 (700)
71 PRK07003 DNA polymerase III su 99.6 3.8E-14 8.2E-19 167.0 19.2 203 417-668 8-239 (830)
72 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.8E-14 1.7E-18 143.2 18.5 204 421-670 11-225 (226)
73 KOG2004 Mitochondrial ATP-depe 99.6 8.7E-15 1.9E-19 168.6 12.3 195 399-617 392-597 (906)
74 PRK06645 DNA polymerase III su 99.6 9.3E-14 2E-18 160.1 19.7 216 416-671 12-254 (507)
75 TIGR03345 VI_ClpV1 type VI sec 99.6 4.6E-14 1E-18 171.7 17.7 217 421-670 183-428 (852)
76 PRK14960 DNA polymerase III su 99.6 8.3E-14 1.8E-18 162.7 18.5 205 418-671 8-241 (702)
77 PRK14086 dnaA chromosomal repl 99.6 7.5E-14 1.6E-18 162.7 18.1 222 419-675 282-517 (617)
78 PRK12402 replication factor C 99.6 2E-13 4.3E-18 148.2 20.2 211 417-672 7-248 (337)
79 PRK07994 DNA polymerase III su 99.5 1.2E-13 2.5E-18 162.7 19.3 205 418-671 9-242 (647)
80 PLN03025 replication factor C 99.5 8.9E-14 1.9E-18 151.7 16.9 203 416-669 4-219 (319)
81 PRK14958 DNA polymerase III su 99.5 5.5E-14 1.2E-18 162.5 16.1 205 417-670 8-241 (509)
82 PRK08903 DnaA regulatory inact 99.5 2.2E-13 4.7E-18 141.0 18.5 201 420-671 13-224 (227)
83 PRK12422 chromosomal replicati 99.5 2.4E-13 5.2E-18 154.9 20.4 226 419-674 105-344 (445)
84 PRK08691 DNA polymerase III su 99.5 1.3E-13 2.9E-18 162.0 17.7 206 417-671 8-242 (709)
85 PRK14949 DNA polymerase III su 99.5 2.6E-13 5.6E-18 162.6 19.9 208 418-668 9-239 (944)
86 PRK08084 DNA replication initi 99.5 5.5E-13 1.2E-17 139.8 19.8 207 419-670 16-233 (235)
87 PHA02544 44 clamp loader, smal 99.5 3.4E-13 7.3E-18 146.0 18.5 207 415-668 11-226 (316)
88 PRK14964 DNA polymerase III su 99.5 2.6E-13 5.6E-18 155.6 18.5 203 419-670 7-238 (491)
89 PRK14963 DNA polymerase III su 99.5 5.3E-13 1.1E-17 154.2 19.8 203 418-670 7-237 (504)
90 PRK14951 DNA polymerase III su 99.5 3.2E-13 7E-18 158.6 18.3 205 417-670 8-246 (618)
91 PRK13341 recombination factor 99.5 3.1E-13 6.6E-18 161.6 18.4 211 417-673 20-247 (725)
92 PRK10865 protein disaggregatio 99.5 1.7E-13 3.6E-18 167.2 16.1 165 422-619 175-357 (857)
93 PRK10787 DNA-binding ATP-depen 99.5 2.9E-13 6.4E-18 163.3 17.3 164 425-617 322-507 (784)
94 TIGR03346 chaperone_ClpB ATP-d 99.5 3.3E-13 7.2E-18 164.8 17.6 202 422-656 170-399 (852)
95 TIGR02397 dnaX_nterm DNA polym 99.5 8E-13 1.7E-17 144.8 18.7 206 417-671 6-240 (355)
96 PRK14087 dnaA chromosomal repl 99.5 6E-13 1.3E-17 151.9 18.3 190 459-673 142-348 (450)
97 CHL00095 clpC Clp protease ATP 99.5 3.2E-13 7E-18 164.4 17.0 197 422-651 176-399 (821)
98 PTZ00112 origin recognition co 99.5 1E-12 2.2E-17 155.7 19.9 220 423-675 753-1008(1164)
99 PRK14969 DNA polymerase III su 99.5 5.6E-13 1.2E-17 154.9 17.5 205 418-671 9-242 (527)
100 PRK14957 DNA polymerase III su 99.5 1E-12 2.2E-17 152.6 19.1 205 418-671 9-242 (546)
101 PRK08727 hypothetical protein; 99.5 1.2E-12 2.5E-17 137.2 17.8 208 419-672 13-230 (233)
102 PRK05563 DNA polymerase III su 99.5 1.4E-12 2.9E-17 152.7 20.0 204 418-670 9-241 (559)
103 PRK14952 DNA polymerase III su 99.5 9.5E-13 2.1E-17 154.0 18.3 205 418-670 6-241 (584)
104 PRK05342 clpX ATP-dependent pr 99.5 1.2E-12 2.6E-17 147.8 18.3 220 426-655 72-380 (412)
105 PRK07764 DNA polymerase III su 99.5 1.3E-12 2.9E-17 157.9 19.0 204 418-669 8-242 (824)
106 PRK07940 DNA polymerase III su 99.5 1.1E-12 2.5E-17 147.3 17.0 183 423-643 3-212 (394)
107 KOG2028 ATPase related to the 99.4 1.5E-12 3.2E-17 141.3 16.4 208 419-675 132-370 (554)
108 COG0593 DnaA ATPase involved i 99.4 3.8E-12 8.2E-17 142.5 20.2 226 417-676 79-316 (408)
109 PRK14959 DNA polymerase III su 99.4 2E-12 4.2E-17 151.5 18.2 205 417-670 8-241 (624)
110 PRK05642 DNA replication initi 99.4 5.1E-12 1.1E-16 132.5 19.5 180 458-671 45-233 (234)
111 PF05673 DUF815: Protein of un 99.4 2.6E-12 5.7E-17 134.8 17.1 195 416-648 18-244 (249)
112 TIGR02640 gas_vesic_GvpN gas v 99.4 4.1E-12 9E-17 135.3 18.2 189 458-675 21-259 (262)
113 PRK00440 rfc replication facto 99.4 4.6E-12 1E-16 136.4 18.6 206 415-671 7-224 (319)
114 PRK14965 DNA polymerase III su 99.4 2.5E-12 5.5E-17 150.9 17.8 203 418-669 9-240 (576)
115 PRK07133 DNA polymerase III su 99.4 4.6E-12 1E-16 150.3 19.7 211 417-670 10-240 (725)
116 PRK14970 DNA polymerase III su 99.4 3.7E-12 8.1E-17 141.3 17.8 206 417-671 9-231 (367)
117 KOG0989 Replication factor C, 99.4 1.8E-12 3.9E-17 138.5 14.2 196 413-651 24-236 (346)
118 PF00308 Bac_DnaA: Bacterial d 99.4 2.2E-12 4.8E-17 134.1 14.5 200 420-653 3-216 (219)
119 PRK05896 DNA polymerase III su 99.4 4.9E-12 1.1E-16 147.6 18.5 205 417-670 8-241 (605)
120 PRK08451 DNA polymerase III su 99.4 7.5E-12 1.6E-16 145.0 19.8 203 417-668 6-237 (535)
121 PRK13407 bchI magnesium chelat 99.4 1.6E-12 3.5E-17 143.1 13.2 220 420-675 3-308 (334)
122 PRK06620 hypothetical protein; 99.4 4.8E-12 1E-16 131.2 15.7 195 419-670 10-213 (214)
123 PRK09111 DNA polymerase III su 99.4 7.3E-12 1.6E-16 147.2 19.1 213 416-671 15-255 (598)
124 PRK06305 DNA polymerase III su 99.4 7.5E-12 1.6E-16 143.0 18.6 205 417-670 9-243 (451)
125 PRK14953 DNA polymerase III su 99.4 8.9E-12 1.9E-16 143.6 18.6 210 418-670 9-241 (486)
126 COG1474 CDC6 Cdc6-related prot 99.4 1.5E-11 3.3E-16 137.0 19.9 218 425-674 17-266 (366)
127 TIGR00382 clpX endopeptidase C 99.4 7.3E-12 1.6E-16 141.2 17.3 219 427-655 79-386 (413)
128 PRK14955 DNA polymerase III su 99.4 7.3E-12 1.6E-16 140.9 17.2 215 417-670 8-254 (397)
129 COG2812 DnaX DNA polymerase II 99.4 6.8E-12 1.5E-16 144.1 16.6 209 418-669 9-240 (515)
130 TIGR00390 hslU ATP-dependent p 99.4 8.5E-12 1.8E-16 139.8 16.9 87 426-512 13-103 (441)
131 PRK11034 clpA ATP-dependent Cl 99.4 1E-11 2.3E-16 149.3 18.8 165 426-617 459-667 (758)
132 PRK06647 DNA polymerase III su 99.4 1.1E-11 2.3E-16 145.1 18.1 204 418-670 9-241 (563)
133 PRK05201 hslU ATP-dependent pr 99.4 8.6E-12 1.9E-16 139.9 16.1 88 426-513 16-107 (443)
134 COG2204 AtoC Response regulato 99.4 1.5E-12 3.4E-17 147.5 9.1 286 303-668 60-386 (464)
135 CHL00081 chlI Mg-protoporyphyr 99.3 1.3E-11 2.8E-16 136.5 15.9 227 419-678 11-327 (350)
136 TIGR02639 ClpA ATP-dependent C 99.3 3.2E-11 6.9E-16 145.4 20.3 202 425-653 454-711 (731)
137 TIGR02903 spore_lon_C ATP-depe 99.3 5.5E-11 1.2E-15 140.7 21.2 219 420-674 149-431 (615)
138 COG3829 RocR Transcriptional r 99.3 6.9E-12 1.5E-16 142.7 12.7 249 420-709 240-532 (560)
139 PRK14954 DNA polymerase III su 99.3 4.7E-11 1E-15 140.8 19.8 214 418-670 9-254 (620)
140 PRK14948 DNA polymerase III su 99.3 3.9E-11 8.4E-16 141.9 19.1 201 418-668 9-240 (620)
141 TIGR02030 BchI-ChlI magnesium 99.3 1.8E-11 3.9E-16 135.0 14.4 220 423-677 2-313 (337)
142 PRK14950 DNA polymerase III su 99.3 4.6E-11 9.9E-16 140.7 18.1 206 417-671 8-243 (585)
143 cd00009 AAA The AAA+ (ATPases 99.3 5.6E-11 1.2E-15 110.2 14.0 124 457-601 18-150 (151)
144 PRK09087 hypothetical protein; 99.3 5.4E-11 1.2E-15 124.4 15.4 172 459-673 45-222 (226)
145 COG3604 FhlA Transcriptional r 99.3 9.5E-11 2.1E-15 132.1 17.4 201 421-653 219-456 (550)
146 TIGR02442 Cob-chelat-sub cobal 99.3 5.5E-11 1.2E-15 141.2 15.3 215 423-676 2-307 (633)
147 TIGR01650 PD_CobS cobaltochela 99.2 1.3E-11 2.9E-16 134.9 9.1 186 458-675 64-296 (327)
148 PRK14971 DNA polymerase III su 99.2 2.8E-10 6.1E-15 134.6 20.0 204 419-671 11-244 (614)
149 COG1224 TIP49 DNA helicase TIP 99.2 4E-10 8.6E-15 122.7 19.2 99 573-674 322-433 (450)
150 TIGR00368 Mg chelatase-related 99.2 2.3E-10 5E-15 132.2 17.0 213 421-671 188-497 (499)
151 COG2607 Predicted ATPase (AAA+ 99.2 8.1E-10 1.7E-14 115.2 17.9 196 416-649 51-277 (287)
152 TIGR03345 VI_ClpV1 type VI sec 99.2 4.9E-10 1.1E-14 137.0 18.8 198 425-653 566-830 (852)
153 COG0542 clpA ATP-binding subun 99.2 1E-10 2.2E-15 139.1 12.1 125 425-580 491-643 (786)
154 TIGR03015 pepcterm_ATPase puta 99.2 8.9E-10 1.9E-14 116.2 17.8 192 459-674 44-267 (269)
155 PHA02244 ATPase-like protein 99.2 6.9E-10 1.5E-14 123.1 17.5 125 458-605 119-263 (383)
156 TIGR03346 chaperone_ClpB ATP-d 99.2 8.6E-10 1.9E-14 135.2 20.1 203 425-654 565-826 (852)
157 PF05621 TniB: Bacterial TniB 99.2 1.2E-09 2.7E-14 118.0 18.8 217 425-668 34-284 (302)
158 KOG1969 DNA replication checkp 99.2 8.1E-10 1.7E-14 128.7 18.4 215 411-657 257-519 (877)
159 PRK13531 regulatory ATPase Rav 99.2 6.3E-10 1.4E-14 127.1 17.0 212 426-677 21-287 (498)
160 PRK10865 protein disaggregatio 99.2 1E-09 2.2E-14 134.5 19.6 198 424-652 567-827 (857)
161 TIGR02329 propionate_PrpR prop 99.1 2.7E-10 5.9E-15 132.4 13.3 217 422-670 209-467 (526)
162 PRK15424 propionate catabolism 99.1 2.1E-10 4.5E-15 133.5 11.9 210 422-667 216-479 (538)
163 TIGR01817 nifA Nif-specific re 99.1 2.7E-10 5.9E-15 132.7 12.7 212 419-668 190-440 (534)
164 smart00350 MCM minichromosome 99.1 6E-10 1.3E-14 129.4 14.8 222 426-673 204-504 (509)
165 CHL00095 clpC Clp protease ATP 99.1 1.7E-09 3.7E-14 132.1 19.4 167 425-618 509-734 (821)
166 smart00382 AAA ATPases associa 99.1 4.3E-10 9.3E-15 102.9 10.7 128 458-603 2-147 (148)
167 PRK09112 DNA polymerase III su 99.1 1.7E-09 3.8E-14 120.1 17.0 191 419-649 17-244 (351)
168 COG0714 MoxR-like ATPases [Gen 99.1 1.5E-09 3.3E-14 119.1 15.6 137 458-615 43-202 (329)
169 PRK11388 DNA-binding transcrip 99.1 1.3E-09 2.8E-14 129.7 16.1 213 421-671 321-569 (638)
170 COG0542 clpA ATP-binding subun 99.1 1.8E-09 4E-14 128.6 17.2 204 421-656 166-396 (786)
171 TIGR02974 phageshock_pspF psp 99.1 1.7E-09 3.7E-14 119.2 14.9 192 427-653 1-233 (329)
172 PRK05022 anaerobic nitric oxid 99.1 8.5E-10 1.8E-14 128.1 13.1 210 423-667 185-437 (509)
173 COG1221 PspF Transcriptional r 99.1 4.2E-10 9.1E-15 126.0 10.1 200 420-655 73-311 (403)
174 PRK10820 DNA-binding transcrip 99.1 1.3E-09 2.9E-14 126.8 14.2 208 421-666 200-447 (520)
175 PRK11608 pspF phage shock prot 99.0 2.2E-09 4.8E-14 118.0 14.8 196 423-653 4-240 (326)
176 TIGR02031 BchD-ChlD magnesium 99.0 2.7E-09 5.8E-14 126.0 15.5 193 459-675 17-260 (589)
177 PRK09862 putative ATP-dependen 99.0 4.7E-09 1E-13 121.4 16.9 212 422-671 188-490 (506)
178 PRK07471 DNA polymerase III su 99.0 5.8E-09 1.3E-13 116.5 16.9 186 419-646 13-239 (365)
179 PRK05564 DNA polymerase III su 99.0 6.1E-09 1.3E-13 113.5 15.7 169 423-636 2-182 (313)
180 PF07728 AAA_5: AAA domain (dy 99.0 2.6E-10 5.7E-15 108.9 4.3 113 460-594 1-139 (139)
181 PRK15429 formate hydrogenlyase 99.0 4.7E-09 1E-13 126.0 15.8 201 421-653 372-609 (686)
182 TIGR00602 rad24 checkpoint pro 99.0 5.4E-09 1.2E-13 123.7 15.9 224 414-671 73-353 (637)
183 PF01078 Mg_chelatase: Magnesi 99.0 3E-10 6.6E-15 117.0 4.8 45 423-481 1-45 (206)
184 KOG0991 Replication factor C, 99.0 3E-09 6.5E-14 110.5 12.0 209 415-671 17-235 (333)
185 TIGR00764 lon_rel lon-related 99.0 2.4E-09 5.2E-14 126.7 13.0 103 570-674 267-392 (608)
186 TIGR00678 holB DNA polymerase 99.0 6.6E-09 1.4E-13 104.8 13.7 144 456-636 12-183 (188)
187 KOG0741 AAA+-type ATPase [Post 99.0 6.5E-09 1.4E-13 117.6 14.6 161 434-614 520-684 (744)
188 PRK11331 5-methylcytosine-spec 99.0 5.3E-09 1.2E-13 118.7 13.8 158 424-602 174-357 (459)
189 COG0470 HolB ATPase involved i 99.0 9.3E-09 2E-13 110.8 14.9 149 426-613 2-178 (325)
190 COG0606 Predicted ATPase with 98.9 1.8E-09 3.8E-14 122.0 7.9 210 421-671 175-483 (490)
191 KOG1942 DNA helicase, TBP-inte 98.9 3.2E-08 6.9E-13 105.6 16.8 100 572-674 326-439 (456)
192 PRK07399 DNA polymerase III su 98.9 1.2E-08 2.5E-13 111.9 13.8 184 423-648 2-224 (314)
193 PRK04132 replication factor C 98.9 1.5E-08 3.3E-13 122.8 15.6 172 460-670 566-751 (846)
194 PF00158 Sigma54_activat: Sigm 98.9 9.3E-09 2E-13 103.1 10.1 123 427-581 1-144 (168)
195 PF06068 TIP49: TIP49 C-termin 98.9 3.8E-08 8.3E-13 108.8 15.3 66 423-495 22-89 (398)
196 PF07724 AAA_2: AAA domain (Cd 98.8 4.3E-09 9.4E-14 105.8 6.7 114 457-583 2-132 (171)
197 COG1219 ClpX ATP-dependent pro 98.8 1.2E-08 2.6E-13 110.0 9.2 107 426-534 62-179 (408)
198 COG1239 ChlI Mg-chelatase subu 98.8 2E-08 4.4E-13 112.1 11.2 220 421-677 13-326 (423)
199 PRK05707 DNA polymerase III su 98.8 4.7E-08 1E-12 107.8 13.9 156 456-645 20-203 (328)
200 PRK11361 acetoacetate metaboli 98.8 2.1E-07 4.7E-12 105.7 18.9 210 423-670 141-390 (457)
201 KOG1514 Origin recognition com 98.8 1.3E-07 2.8E-12 110.5 17.0 221 427-677 398-659 (767)
202 TIGR02915 PEP_resp_reg putativ 98.8 4.6E-08 9.9E-13 111.0 13.1 207 423-667 137-383 (445)
203 PTZ00111 DNA replication licen 98.7 1.8E-07 3.9E-12 113.5 17.1 158 426-610 451-651 (915)
204 PRK08058 DNA polymerase III su 98.7 6.1E-08 1.3E-12 106.9 12.1 149 423-614 3-180 (329)
205 PRK13765 ATP-dependent proteas 98.7 6.4E-08 1.4E-12 114.9 12.9 100 571-672 277-399 (637)
206 PRK08116 hypothetical protein; 98.7 7.9E-08 1.7E-12 103.2 11.5 69 458-528 114-189 (268)
207 PRK10923 glnG nitrogen regulat 98.7 1.4E-07 3E-12 108.0 13.7 210 423-670 136-385 (469)
208 PRK12377 putative replication 98.7 1.4E-07 3E-12 100.3 12.1 69 459-529 102-175 (248)
209 TIGR01818 ntrC nitrogen regula 98.7 1.7E-07 3.7E-12 106.8 13.6 211 425-670 134-381 (463)
210 KOG2227 Pre-initiation complex 98.6 7.9E-07 1.7E-11 100.3 17.5 225 425-678 150-420 (529)
211 COG3283 TyrR Transcriptional r 98.6 4.6E-07 1E-11 99.2 15.1 215 420-669 199-445 (511)
212 PRK15115 response regulator Gl 98.6 3.2E-07 6.9E-12 104.2 14.2 207 426-670 135-381 (444)
213 COG1220 HslU ATP-dependent pro 98.6 3.1E-07 6.8E-12 99.9 12.8 69 426-494 16-86 (444)
214 KOG0745 Putative ATP-dependent 98.6 1.5E-07 3.2E-12 105.0 9.5 74 460-533 228-307 (564)
215 smart00763 AAA_PrkA PrkA AAA d 98.6 4.8E-07 1E-11 100.6 13.4 81 423-510 48-141 (361)
216 PRK07952 DNA replication prote 98.6 3.8E-07 8.3E-12 96.8 12.2 100 421-529 68-174 (244)
217 PRK13406 bchD magnesium chelat 98.6 2.9E-07 6.2E-12 108.6 11.9 189 459-675 26-252 (584)
218 PRK08181 transposase; Validate 98.5 5.7E-07 1.2E-11 96.8 12.0 71 458-530 106-180 (269)
219 PF07726 AAA_3: ATPase family 98.5 4.1E-08 8.9E-13 94.4 2.5 114 460-594 1-129 (131)
220 PRK10365 transcriptional regul 98.5 6.1E-07 1.3E-11 101.5 12.3 207 426-670 140-386 (441)
221 PRK06526 transposase; Provisio 98.5 3.1E-07 6.7E-12 98.0 9.3 72 457-530 97-172 (254)
222 PF13177 DNA_pol3_delta2: DNA 98.5 1E-06 2.3E-11 87.7 12.3 133 429-602 1-160 (162)
223 PRK06964 DNA polymerase III su 98.5 5.2E-07 1.1E-11 100.1 11.0 133 456-615 19-203 (342)
224 KOG0990 Replication factor C, 98.5 1.1E-06 2.5E-11 95.2 13.2 199 409-654 25-238 (360)
225 PRK06871 DNA polymerase III su 98.5 1.6E-06 3.4E-11 95.7 14.6 129 456-615 22-178 (325)
226 PF03215 Rad17: Rad17 cell cyc 98.5 2.3E-06 4.9E-11 99.8 16.0 211 413-654 7-269 (519)
227 PF01637 Arch_ATPase: Archaeal 98.5 1.1E-06 2.5E-11 89.1 12.0 183 428-643 2-232 (234)
228 KOG0058 Peptide exporter, ABC 98.5 2.4E-07 5.2E-12 109.1 7.2 168 354-532 397-637 (716)
229 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.9E-11 93.1 12.0 73 457-530 104-180 (254)
230 PRK08939 primosomal protein Dn 98.4 8.8E-07 1.9E-11 97.0 9.9 102 421-529 123-229 (306)
231 KOG2035 Replication factor C, 98.4 9.9E-06 2.1E-10 86.6 17.3 176 417-636 5-220 (351)
232 PF13173 AAA_14: AAA domain 98.4 2.6E-06 5.7E-11 81.0 11.8 70 459-530 3-74 (128)
233 PRK09183 transposase/IS protei 98.4 1.3E-06 2.8E-11 93.4 10.3 74 456-530 100-177 (259)
234 PF14532 Sigma54_activ_2: Sigm 98.4 3.2E-07 7E-12 88.3 5.1 81 428-532 1-84 (138)
235 PRK07993 DNA polymerase III su 98.4 2.3E-06 4.9E-11 94.8 12.4 147 456-636 22-196 (334)
236 COG3284 AcoR Transcriptional a 98.4 4.2E-07 9.2E-12 105.7 6.8 205 428-671 316-555 (606)
237 PRK08769 DNA polymerase III su 98.4 5.6E-06 1.2E-10 91.2 15.3 152 456-639 24-203 (319)
238 PRK06835 DNA replication prote 98.4 1.9E-06 4E-11 95.3 11.6 69 459-529 184-258 (329)
239 KOG2680 DNA helicase TIP49, TB 98.3 1.5E-05 3.3E-10 85.9 16.8 92 581-675 339-431 (454)
240 PF01695 IstB_IS21: IstB-like 98.3 9E-07 2E-11 89.5 6.6 71 456-528 45-119 (178)
241 PRK06090 DNA polymerase III su 98.3 7.5E-06 1.6E-10 90.2 13.6 129 456-614 23-178 (319)
242 KOG1051 Chaperone HSP104 and r 98.3 5.2E-06 1.1E-10 100.9 13.4 129 426-582 563-712 (898)
243 PRK06921 hypothetical protein; 98.2 5.8E-06 1.3E-10 88.8 11.1 68 458-528 117-188 (266)
244 PF13401 AAA_22: AAA domain; P 98.2 6.1E-06 1.3E-10 77.3 9.1 73 458-530 4-100 (131)
245 COG2274 SunT ABC-type bacterio 98.2 1.8E-06 3.9E-11 103.9 5.9 120 350-480 398-521 (709)
246 COG3267 ExeA Type II secretory 98.1 9.7E-05 2.1E-09 78.5 17.2 183 460-667 53-267 (269)
247 KOG0056 Heavy metal exporter H 98.1 2E-06 4.3E-11 97.3 4.6 114 357-481 471-587 (790)
248 cd01120 RecA-like_NTPases RecA 98.1 9E-06 1.9E-10 77.7 8.6 72 461-532 2-100 (165)
249 PRK08699 DNA polymerase III su 98.1 8.7E-06 1.9E-10 89.9 9.5 131 456-614 19-183 (325)
250 PF05729 NACHT: NACHT domain 98.1 2.9E-05 6.3E-10 74.9 12.0 142 460-618 2-165 (166)
251 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.3E-05 2.7E-10 89.9 10.5 141 455-630 59-207 (362)
252 PF12775 AAA_7: P-loop contain 98.1 5.7E-06 1.2E-10 89.2 7.5 139 458-618 33-195 (272)
253 KOG0480 DNA replication licens 98.1 1.8E-05 3.9E-10 92.1 11.9 223 423-674 343-644 (764)
254 COG1241 MCM2 Predicted ATPase 98.1 1.5E-05 3.3E-10 94.9 11.5 221 425-675 286-594 (682)
255 KOG1970 Checkpoint RAD17-RFC c 98.1 7.4E-05 1.6E-09 86.1 16.1 209 415-653 72-320 (634)
256 KOG0478 DNA replication licens 98.1 3.9E-05 8.5E-10 89.9 13.7 155 426-606 430-616 (804)
257 TIGR02237 recomb_radB DNA repa 98.0 4.4E-05 9.5E-10 78.1 11.0 78 454-531 8-111 (209)
258 COG4178 ABC-type uncharacteriz 98.0 6.2E-06 1.3E-10 96.8 5.3 120 350-480 311-441 (604)
259 TIGR02868 CydC thiol reductant 98.0 1.4E-05 3.1E-10 93.1 8.3 117 355-482 264-385 (529)
260 PF00493 MCM: MCM2/3/5 family 98.0 2.3E-06 5E-11 94.6 1.4 219 425-673 24-326 (331)
261 PF00931 NB-ARC: NB-ARC domain 98.0 0.00014 3.1E-09 77.3 15.0 159 457-646 18-203 (287)
262 PLN03210 Resistant to P. syrin 97.9 0.0001 2.2E-09 93.9 15.5 175 421-637 180-388 (1153)
263 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00012 2.5E-09 77.4 12.4 129 459-612 33-176 (231)
264 COG1485 Predicted ATPase [Gene 97.8 7.4E-05 1.6E-09 82.5 9.6 136 456-627 63-207 (367)
265 PRK11176 lipid transporter ATP 97.8 2.7E-05 5.8E-10 91.8 6.2 117 355-482 275-393 (582)
266 cd01124 KaiC KaiC is a circadi 97.8 0.00023 5.1E-09 70.8 11.9 71 461-531 2-109 (187)
267 COG5265 ATM1 ABC-type transpor 97.8 4.8E-05 1.1E-09 85.4 7.6 119 353-482 191-313 (497)
268 KOG0482 DNA replication licens 97.7 0.00021 4.6E-09 81.5 12.1 226 426-676 343-641 (721)
269 TIGR01618 phage_P_loop phage n 97.7 0.00014 3E-09 76.4 9.8 72 458-531 12-95 (220)
270 COG1132 MdlB ABC-type multidru 97.7 2.7E-05 5.8E-10 91.7 4.4 116 356-482 263-379 (567)
271 TIGR01193 bacteriocin_ABC ABC- 97.7 0.00011 2.3E-09 89.0 9.3 120 351-481 401-523 (708)
272 TIGR02203 MsbA_lipidA lipid A 97.7 4E-05 8.8E-10 89.9 5.5 122 350-482 259-382 (571)
273 KOG2170 ATPase of the AAA+ sup 97.7 0.0016 3.5E-08 70.8 16.9 220 426-678 83-324 (344)
274 TIGR02688 conserved hypothetic 97.7 0.0008 1.7E-08 76.6 15.0 77 431-530 193-273 (449)
275 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 7.9E-05 1.7E-09 89.8 7.3 116 355-482 385-503 (686)
276 PRK13657 cyclic beta-1,2-gluca 97.6 0.0001 2.3E-09 87.1 8.2 120 352-482 263-385 (588)
277 COG1116 TauB ABC-type nitrate/ 97.6 4E-05 8.7E-10 81.2 4.1 27 454-480 25-51 (248)
278 TIGR03796 NHPM_micro_ABC1 NHPM 97.6 4.3E-05 9.3E-10 92.3 4.7 120 352-482 400-529 (710)
279 PRK05917 DNA polymerase III su 97.6 0.00019 4.2E-09 78.1 9.1 118 456-603 17-154 (290)
280 PRK05818 DNA polymerase III su 97.6 0.0014 3E-08 70.5 14.8 121 456-603 5-147 (261)
281 TIGR02857 CydD thiol reductant 97.6 8.8E-05 1.9E-09 86.5 6.1 30 453-482 343-372 (529)
282 TIGR00958 3a01208 Conjugate Tr 97.6 6.3E-05 1.4E-09 91.2 5.0 118 354-482 410-531 (711)
283 PRK09361 radB DNA repair and r 97.6 0.00055 1.2E-08 71.0 11.1 39 454-492 19-60 (225)
284 PRK10790 putative multidrug tr 97.6 0.00022 4.8E-09 84.4 9.2 115 356-482 276-391 (592)
285 KOG0057 Mitochondrial Fe/S clu 97.5 0.00017 3.8E-09 83.2 7.9 113 356-480 286-400 (591)
286 TIGR03375 type_I_sec_LssB type 97.5 3.4E-05 7.4E-10 93.0 2.4 120 352-482 392-515 (694)
287 PRK11823 DNA repair protein Ra 97.5 0.0002 4.4E-09 82.4 8.4 79 454-532 76-171 (446)
288 cd01121 Sms Sms (bacterial rad 97.5 0.00021 4.6E-09 80.5 8.3 78 454-531 78-172 (372)
289 COG4619 ABC-type uncharacteriz 97.5 0.00024 5.2E-09 71.6 7.6 28 453-480 24-51 (223)
290 KOG2383 Predicted ATPase [Gene 97.5 0.00081 1.8E-08 75.4 12.4 162 455-651 111-298 (467)
291 KOG0477 DNA replication licens 97.5 0.00049 1.1E-08 80.2 10.9 61 427-489 451-513 (854)
292 PRK07276 DNA polymerase III su 97.5 0.0017 3.6E-08 71.0 14.5 128 456-613 22-172 (290)
293 PRK08533 flagellar accessory p 97.5 0.0011 2.4E-08 69.7 12.6 77 454-530 20-130 (230)
294 COG4650 RtcR Sigma54-dependent 97.5 0.00025 5.4E-09 76.5 7.7 80 454-533 204-298 (531)
295 TIGR01846 type_I_sec_HlyB type 97.5 0.00021 4.6E-09 86.3 8.2 119 353-482 386-507 (694)
296 TIGR02012 tigrfam_recA protein 97.5 0.00049 1.1E-08 76.0 10.2 79 454-532 51-148 (321)
297 COG1373 Predicted ATPase (AAA+ 97.5 0.0037 8.1E-08 71.1 17.5 123 460-610 39-161 (398)
298 PRK10789 putative multidrug tr 97.5 0.0001 2.2E-09 87.1 4.7 117 355-482 247-365 (569)
299 TIGR01192 chvA glucan exporter 97.4 9.5E-05 2.1E-09 87.7 4.3 118 354-482 265-385 (585)
300 PRK06067 flagellar accessory p 97.4 0.00094 2E-08 69.8 11.2 40 454-493 21-63 (234)
301 PF00910 RNA_helicase: RNA hel 97.4 8.4E-05 1.8E-09 68.9 2.9 23 461-483 1-23 (107)
302 COG5271 MDN1 AAA ATPase contai 97.4 0.00034 7.4E-09 87.8 8.7 139 457-617 1542-1704(4600)
303 cd01128 rho_factor Transcripti 97.4 0.0011 2.4E-08 70.8 11.8 29 456-484 14-42 (249)
304 PRK00131 aroK shikimate kinase 97.4 0.0005 1.1E-08 67.3 8.4 34 456-489 2-35 (175)
305 cd01394 radB RadB. The archaea 97.4 0.0014 3E-08 67.6 11.6 39 454-492 15-56 (218)
306 KOG1968 Replication factor C, 97.4 0.00023 4.9E-09 87.4 6.7 209 415-652 310-535 (871)
307 PF14516 AAA_35: AAA-like doma 97.4 0.0081 1.8E-07 66.7 18.3 175 457-648 30-242 (331)
308 PHA00729 NTP-binding motif con 97.4 0.00025 5.4E-09 74.7 6.0 24 460-483 19-42 (226)
309 cd03283 ABC_MutS-like MutS-lik 97.4 0.00067 1.5E-08 69.9 9.0 74 455-528 22-116 (199)
310 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3.1E-09 67.4 3.7 30 461-490 2-31 (121)
311 TIGR02204 MsbA_rel ABC transpo 97.4 0.00053 1.2E-08 80.7 9.3 30 453-482 361-390 (576)
312 PRK07132 DNA polymerase III su 97.4 0.0034 7.4E-08 68.9 14.8 124 457-614 17-160 (299)
313 cd00983 recA RecA is a bacter 97.4 0.00066 1.4E-08 75.2 9.1 79 454-532 51-148 (325)
314 PRK11160 cysteine/glutathione 97.3 0.00021 4.5E-09 84.6 5.4 30 453-482 361-390 (574)
315 PRK11174 cysteine/glutathione 97.3 0.00012 2.6E-09 86.5 3.1 30 453-482 371-400 (588)
316 cd03216 ABC_Carb_Monos_I This 97.3 0.00042 9.1E-09 68.8 6.3 76 453-528 21-111 (163)
317 PRK08118 topology modulation p 97.3 0.00038 8.3E-09 69.7 5.6 32 460-491 3-34 (167)
318 PRK07261 topology modulation p 97.3 0.00046 1E-08 69.3 6.1 34 460-493 2-35 (171)
319 COG1618 Predicted nucleotide k 97.3 0.0011 2.3E-08 66.5 8.5 26 457-482 4-29 (179)
320 PRK09376 rho transcription ter 97.2 0.0011 2.3E-08 75.1 9.4 77 458-534 169-273 (416)
321 TIGR01842 type_I_sec_PrtD type 97.2 0.00071 1.5E-08 79.5 8.4 118 353-482 249-368 (544)
322 PRK14722 flhF flagellar biosyn 97.2 0.00083 1.8E-08 75.7 8.4 111 455-588 134-266 (374)
323 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0016 3.4E-08 67.7 9.9 40 454-493 15-63 (235)
324 cd00046 DEXDc DEAD-like helica 97.2 0.0032 6.9E-08 57.5 10.9 23 460-482 2-24 (144)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0014 3.1E-08 63.8 8.6 74 453-528 21-99 (144)
326 PF13671 AAA_33: AAA domain; P 97.2 0.001 2.2E-08 63.3 7.3 36 461-498 2-37 (143)
327 TIGR02858 spore_III_AA stage I 97.1 0.001 2.2E-08 71.9 7.7 69 459-527 112-204 (270)
328 cd01393 recA_like RecA is a b 97.1 0.0015 3.2E-08 67.5 8.6 40 454-493 15-63 (226)
329 PF05707 Zot: Zonular occluden 97.1 0.00039 8.4E-09 71.0 4.2 123 461-603 3-146 (193)
330 KOG2543 Origin recognition com 97.1 0.0061 1.3E-07 68.3 13.6 161 425-617 6-194 (438)
331 PF00437 T2SE: Type II/IV secr 97.1 0.00097 2.1E-08 71.1 7.3 102 417-528 96-208 (270)
332 KOG0481 DNA replication licens 97.1 0.0031 6.7E-08 72.5 11.1 60 426-485 332-391 (729)
333 TIGR00416 sms DNA repair prote 97.1 0.0013 2.8E-08 76.1 8.4 78 454-531 90-184 (454)
334 PF06745 KaiC: KaiC; InterPro 97.1 0.0033 7.1E-08 65.3 10.7 40 454-493 15-58 (226)
335 PF13191 AAA_16: AAA ATPase do 97.1 0.00036 7.8E-09 68.9 3.2 59 427-494 2-63 (185)
336 PRK05973 replicative DNA helic 97.1 0.009 1.9E-07 63.6 13.9 39 454-492 60-101 (237)
337 PRK15455 PrkA family serine pr 97.1 0.00066 1.4E-08 79.7 5.8 64 422-491 73-137 (644)
338 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0057 1.2E-07 64.4 12.3 40 454-493 17-59 (237)
339 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0014 3E-08 66.6 7.2 74 455-528 22-100 (177)
340 cd03247 ABCC_cytochrome_bd The 97.0 0.0036 7.8E-08 62.7 10.0 76 453-528 23-127 (178)
341 KOG2228 Origin recognition com 97.0 0.0031 6.7E-08 69.6 10.0 160 426-616 25-219 (408)
342 COG1126 GlnQ ABC-type polar am 97.0 0.0014 3.1E-08 68.5 7.0 29 502-530 139-167 (240)
343 cd03238 ABC_UvrA The excision 97.0 0.0015 3.3E-08 66.2 7.0 76 453-528 16-118 (176)
344 PRK00771 signal recognition pa 97.0 0.011 2.5E-07 68.0 14.8 38 456-493 93-133 (437)
345 PRK09354 recA recombinase A; P 97.0 0.0029 6.3E-08 70.7 9.5 78 454-531 56-152 (349)
346 cd01131 PilT Pilus retraction 97.0 0.001 2.3E-08 68.2 5.5 68 460-527 3-84 (198)
347 TIGR01420 pilT_fam pilus retra 97.0 0.0011 2.4E-08 73.8 6.1 71 457-527 121-205 (343)
348 PRK12723 flagellar biosynthesi 96.9 0.0056 1.2E-07 69.5 11.5 109 457-587 173-305 (388)
349 cd03228 ABCC_MRP_Like The MRP 96.9 0.0016 3.5E-08 64.9 6.5 76 453-528 23-125 (171)
350 PF06309 Torsin: Torsin; Inte 96.9 0.0048 1E-07 59.6 9.3 52 425-482 25-77 (127)
351 PF13604 AAA_30: AAA domain; P 96.9 0.0055 1.2E-07 62.9 10.4 72 459-530 19-106 (196)
352 KOG0055 Multidrug/pheromone ex 96.9 0.001 2.2E-08 83.3 5.8 31 502-532 1129-1159(1228)
353 cd01122 GP4d_helicase GP4d_hel 96.9 0.0038 8.2E-08 66.4 9.4 38 454-491 26-67 (271)
354 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0028 6.1E-08 63.1 7.8 76 453-528 22-120 (166)
355 PLN03130 ABC transporter C fam 96.9 0.0019 4E-08 85.1 8.2 30 453-482 638-667 (1622)
356 PLN03232 ABC transporter C fam 96.9 0.0015 3.3E-08 85.4 7.3 30 453-482 638-667 (1495)
357 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0055 1.2E-07 63.8 10.1 22 459-480 30-51 (213)
358 PRK14974 cell division protein 96.9 0.0066 1.4E-07 67.7 11.3 74 457-530 139-235 (336)
359 PRK06762 hypothetical protein; 96.9 0.0032 6.9E-08 62.0 7.9 40 458-497 2-41 (166)
360 COG4618 ArpD ABC-type protease 96.9 0.00063 1.4E-08 78.2 3.3 28 453-480 357-384 (580)
361 PRK05800 cobU adenosylcobinami 96.9 0.012 2.6E-07 59.4 12.1 72 460-532 3-91 (170)
362 PRK13947 shikimate kinase; Pro 96.9 0.001 2.2E-08 65.8 4.2 31 460-490 3-33 (171)
363 cd00984 DnaB_C DnaB helicase C 96.9 0.0042 9.2E-08 64.8 9.1 38 454-491 9-50 (242)
364 PTZ00265 multidrug resistance 96.9 0.0023 4.9E-08 83.5 8.5 31 453-483 1189-1219(1466)
365 cd03246 ABCC_Protease_Secretio 96.9 0.005 1.1E-07 61.5 9.1 74 454-528 24-125 (173)
366 KOG1051 Chaperone HSP104 and r 96.8 0.0054 1.2E-07 75.4 11.0 139 459-618 209-365 (898)
367 TIGR00767 rho transcription te 96.8 0.0044 9.5E-08 70.4 9.4 29 455-483 165-193 (415)
368 COG1117 PstB ABC-type phosphat 96.8 0.0058 1.2E-07 64.0 9.4 27 454-480 29-55 (253)
369 KOG3347 Predicted nucleotide k 96.8 0.0021 4.5E-08 63.7 5.8 33 458-490 7-39 (176)
370 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.002 4.4E-08 63.0 5.8 75 454-528 21-109 (157)
371 cd03230 ABC_DR_subfamily_A Thi 96.8 0.0047 1E-07 61.7 8.4 76 454-529 22-125 (173)
372 PRK03839 putative kinase; Prov 96.8 0.0011 2.5E-08 66.3 3.9 31 460-490 2-32 (180)
373 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.013 2.9E-07 60.8 11.9 38 454-491 16-56 (229)
374 cd00464 SK Shikimate kinase (S 96.8 0.0013 2.7E-08 63.5 4.0 31 460-490 1-31 (154)
375 TIGR02782 TrbB_P P-type conjug 96.8 0.0011 2.3E-08 72.7 3.9 71 458-528 132-215 (299)
376 COG1120 FepC ABC-type cobalami 96.8 0.0076 1.7E-07 64.8 10.1 28 454-481 24-51 (258)
377 cd01130 VirB11-like_ATPase Typ 96.8 0.0016 3.5E-08 66.0 4.8 72 456-527 23-110 (186)
378 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.018 3.9E-07 59.8 12.6 40 454-493 12-54 (224)
379 cd03243 ABC_MutS_homologs The 96.7 0.0042 9.1E-08 63.7 7.8 26 455-480 26-51 (202)
380 COG3842 PotA ABC-type spermidi 96.7 0.0017 3.6E-08 72.7 5.1 26 455-480 28-53 (352)
381 TIGR00957 MRP_assoc_pro multi 96.7 0.0013 2.8E-08 86.2 4.9 29 453-481 1307-1335(1522)
382 PF07693 KAP_NTPase: KAP famil 96.7 0.02 4.3E-07 62.3 13.4 28 456-483 18-45 (325)
383 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.012 2.7E-07 63.0 11.6 39 454-492 32-73 (259)
384 cd00227 CPT Chloramphenicol (C 96.7 0.0016 3.4E-08 65.2 4.5 39 458-496 2-40 (175)
385 PRK10536 hypothetical protein; 96.7 0.0095 2.1E-07 64.1 10.6 46 422-481 52-97 (262)
386 PRK11889 flhF flagellar biosyn 96.7 0.022 4.8E-07 64.9 13.9 72 457-528 240-331 (436)
387 PRK13948 shikimate kinase; Pro 96.7 0.0035 7.6E-08 64.0 6.9 43 456-500 8-50 (182)
388 cd03232 ABC_PDR_domain2 The pl 96.7 0.0091 2E-07 60.7 9.9 28 454-481 29-56 (192)
389 cd03214 ABC_Iron-Siderophores_ 96.7 0.0049 1.1E-07 61.9 7.8 76 453-528 20-126 (180)
390 COG1136 SalX ABC-type antimicr 96.7 0.0044 9.5E-08 65.4 7.6 28 453-480 26-53 (226)
391 PRK04841 transcriptional regul 96.7 0.024 5.3E-07 70.0 15.3 155 459-643 33-223 (903)
392 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0049 1.1E-07 66.4 8.0 94 422-528 57-160 (264)
393 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0086 1.9E-07 61.4 9.4 25 455-479 24-49 (200)
394 PRK00625 shikimate kinase; Pro 96.7 0.0017 3.7E-08 65.6 4.2 31 460-490 2-32 (173)
395 TIGR01194 cyc_pep_trnsptr cycl 96.7 0.0025 5.5E-08 75.2 6.2 30 453-482 363-392 (555)
396 PRK12724 flagellar biosynthesi 96.6 0.027 5.8E-07 64.6 13.9 37 457-493 222-262 (432)
397 COG1124 DppF ABC-type dipeptid 96.6 0.0046 1E-07 65.6 7.3 28 453-480 28-55 (252)
398 COG3854 SpoIIIAA ncharacterize 96.6 0.0047 1E-07 65.2 7.1 70 459-528 138-229 (308)
399 PRK04296 thymidine kinase; Pro 96.6 0.0052 1.1E-07 62.8 7.4 70 460-529 4-90 (190)
400 cd03215 ABC_Carb_Monos_II This 96.6 0.0066 1.4E-07 61.1 8.1 30 453-482 21-50 (182)
401 TIGR03574 selen_PSTK L-seryl-t 96.6 0.013 2.8E-07 62.0 10.6 34 461-494 2-38 (249)
402 smart00534 MUTSac ATPase domai 96.6 0.01 2.2E-07 60.2 9.3 19 461-479 2-20 (185)
403 COG4988 CydD ABC-type transpor 96.6 0.0061 1.3E-07 71.3 8.6 30 453-482 342-371 (559)
404 PRK13541 cytochrome c biogenes 96.6 0.016 3.5E-07 58.9 10.8 30 453-482 21-50 (195)
405 PRK13949 shikimate kinase; Pro 96.6 0.002 4.3E-08 64.7 4.0 31 460-490 3-33 (169)
406 PRK12339 2-phosphoglycerate ki 96.6 0.038 8.2E-07 57.2 13.5 29 458-486 3-31 (197)
407 PRK04328 hypothetical protein; 96.6 0.024 5.2E-07 60.4 12.4 38 454-491 19-59 (249)
408 PRK13946 shikimate kinase; Pro 96.6 0.0052 1.1E-07 62.2 7.0 33 458-490 10-42 (184)
409 COG0703 AroK Shikimate kinase 96.6 0.006 1.3E-07 61.8 7.3 32 459-490 3-34 (172)
410 PRK06217 hypothetical protein; 96.6 0.0022 4.7E-08 64.8 4.1 31 460-490 3-33 (183)
411 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0025 5.5E-08 68.2 4.7 60 502-583 142-201 (254)
412 PRK10867 signal recognition pa 96.5 0.043 9.3E-07 63.3 14.9 74 456-529 98-195 (433)
413 cd02020 CMPK Cytidine monophos 96.5 0.0022 4.7E-08 61.2 3.8 30 461-490 2-31 (147)
414 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0021 4.6E-08 64.1 3.9 35 461-497 2-36 (183)
415 COG4608 AppF ABC-type oligopep 96.5 0.0074 1.6E-07 65.0 8.2 79 453-531 34-141 (268)
416 PRK13539 cytochrome c biogenes 96.5 0.014 3.1E-07 59.9 10.0 30 453-482 23-52 (207)
417 PRK14532 adenylate kinase; Pro 96.5 0.0022 4.8E-08 64.5 4.0 37 460-498 2-38 (188)
418 COG4525 TauB ABC-type taurine 96.5 0.0075 1.6E-07 62.5 7.7 29 453-481 26-54 (259)
419 PF13479 AAA_24: AAA domain 96.5 0.017 3.7E-07 60.0 10.7 68 458-530 3-81 (213)
420 PRK12608 transcription termina 96.5 0.016 3.6E-07 65.3 11.1 25 458-482 133-157 (380)
421 TIGR02525 plasmid_TraJ plasmid 96.5 0.0042 9.2E-08 70.1 6.5 70 459-528 150-236 (372)
422 cd03213 ABCG_EPDR ABCG transpo 96.5 0.015 3.3E-07 59.2 10.0 30 453-482 30-59 (194)
423 cd03269 ABC_putative_ATPase Th 96.5 0.016 3.4E-07 59.5 10.1 30 453-482 21-50 (210)
424 PRK10416 signal recognition pa 96.5 0.034 7.5E-07 61.6 13.4 37 456-492 112-151 (318)
425 PRK13900 type IV secretion sys 96.5 0.0032 6.8E-08 70.1 5.2 73 456-528 158-246 (332)
426 PRK13538 cytochrome c biogenes 96.5 0.0085 1.9E-07 61.3 7.8 30 453-482 22-51 (204)
427 COG3839 MalK ABC-type sugar tr 96.5 0.0035 7.5E-08 69.8 5.3 26 455-480 26-51 (338)
428 cd02027 APSK Adenosine 5'-phos 96.5 0.011 2.3E-07 58.1 8.2 36 461-496 2-40 (149)
429 cd03229 ABC_Class3 This class 96.4 0.0034 7.5E-08 62.9 4.7 75 454-528 22-129 (178)
430 PF00448 SRP54: SRP54-type pro 96.4 0.023 5E-07 58.6 10.8 71 458-528 1-94 (196)
431 PF10236 DAP3: Mitochondrial r 96.4 0.18 3.9E-06 55.7 18.3 122 517-644 156-308 (309)
432 KOG0055 Multidrug/pheromone ex 96.4 0.0029 6.4E-08 79.4 4.8 28 454-481 375-402 (1228)
433 TIGR02788 VirB11 P-type DNA tr 96.4 0.0035 7.7E-08 68.8 5.0 74 455-528 141-229 (308)
434 TIGR03499 FlhF flagellar biosy 96.4 0.019 4.1E-07 62.4 10.5 38 456-493 192-234 (282)
435 cd03217 ABC_FeS_Assembly ABC-t 96.4 0.012 2.5E-07 60.3 8.4 29 453-481 21-49 (200)
436 cd02021 GntK Gluconate kinase 96.4 0.0028 6.1E-08 61.3 3.7 32 461-494 2-33 (150)
437 COG4133 CcmA ABC-type transpor 96.4 0.016 3.5E-07 59.6 9.2 28 455-482 25-52 (209)
438 cd00544 CobU Adenosylcobinamid 96.4 0.022 4.7E-07 57.6 10.2 71 461-533 2-89 (169)
439 PRK13764 ATPase; Provisional 96.4 0.0037 8E-08 74.4 5.4 70 458-528 257-335 (602)
440 TIGR02655 circ_KaiC circadian 96.4 0.026 5.6E-07 65.9 12.2 78 454-531 259-367 (484)
441 PRK06696 uridine kinase; Valid 96.4 0.0053 1.2E-07 64.0 5.9 40 457-496 21-63 (223)
442 TIGR01313 therm_gnt_kin carboh 96.4 0.0026 5.7E-08 62.5 3.4 32 461-494 1-32 (163)
443 PRK14531 adenylate kinase; Pro 96.4 0.0035 7.5E-08 63.4 4.3 35 460-496 4-38 (183)
444 cd01428 ADK Adenylate kinase ( 96.4 0.0031 6.6E-08 63.3 3.9 35 461-497 2-36 (194)
445 COG1118 CysA ABC-type sulfate/ 96.3 0.015 3.2E-07 63.8 9.1 27 454-480 24-50 (345)
446 PRK08154 anaerobic benzoate ca 96.3 0.012 2.6E-07 64.7 8.6 35 455-489 130-164 (309)
447 PRK04301 radA DNA repair and r 96.3 0.018 4E-07 63.3 10.1 40 454-493 98-146 (317)
448 PRK14530 adenylate kinase; Pro 96.3 0.0036 7.8E-08 64.8 4.3 35 460-496 5-39 (215)
449 PHA02624 large T antigen; Prov 96.3 0.0063 1.4E-07 72.0 6.7 40 454-493 427-466 (647)
450 PTZ00088 adenylate kinase 1; P 96.3 0.0041 8.9E-08 65.7 4.7 39 456-496 4-42 (229)
451 PRK09519 recA DNA recombinatio 96.3 0.014 3.1E-07 71.2 9.9 78 454-531 56-152 (790)
452 COG0563 Adk Adenylate kinase a 96.3 0.0054 1.2E-07 62.4 5.4 34 460-495 2-35 (178)
453 TIGR02236 recomb_radA DNA repa 96.3 0.023 4.9E-07 62.2 10.7 40 454-493 91-139 (310)
454 PLN02200 adenylate kinase fami 96.3 0.0052 1.1E-07 65.1 5.4 42 454-497 39-80 (234)
455 COG5245 DYN1 Dynein, heavy cha 96.3 0.014 3.1E-07 73.7 9.6 178 455-655 1491-1718(3164)
456 cd03233 ABC_PDR_domain1 The pl 96.3 0.014 3E-07 59.9 8.4 29 454-482 29-57 (202)
457 PRK03731 aroL shikimate kinase 96.3 0.0042 9E-08 61.5 4.3 31 459-489 3-33 (171)
458 PF09848 DUF2075: Uncharacteri 96.3 0.0092 2E-07 66.6 7.5 23 460-482 3-25 (352)
459 PF12780 AAA_8: P-loop contain 96.3 0.017 3.8E-07 62.4 9.3 89 426-526 9-98 (268)
460 PRK13543 cytochrome c biogenes 96.3 0.0098 2.1E-07 61.4 7.2 29 453-481 32-60 (214)
461 PF04665 Pox_A32: Poxvirus A32 96.3 0.043 9.2E-07 58.6 12.0 133 456-615 11-169 (241)
462 PRK13851 type IV secretion sys 96.3 0.0041 8.9E-08 69.5 4.6 72 456-527 160-246 (344)
463 COG2805 PilT Tfp pilus assembl 96.3 0.0083 1.8E-07 65.5 6.7 69 460-528 127-209 (353)
464 cd03282 ABC_MSH4_euk MutS4 hom 96.3 0.023 5E-07 58.9 9.7 25 456-480 27-51 (204)
465 PRK06547 hypothetical protein; 96.3 0.0043 9.4E-08 62.7 4.3 34 456-489 13-46 (172)
466 PRK05057 aroK shikimate kinase 96.3 0.0051 1.1E-07 61.8 4.8 34 458-491 4-37 (172)
467 TIGR02238 recomb_DMC1 meiotic 96.3 0.018 4E-07 63.6 9.5 40 454-493 92-140 (313)
468 PF05272 VirE: Virulence-assoc 96.2 0.01 2.2E-07 61.5 7.0 42 434-481 34-75 (198)
469 PTZ00035 Rad51 protein; Provis 96.2 0.025 5.4E-07 63.1 10.5 39 454-492 114-161 (337)
470 cd03266 ABC_NatA_sodium_export 96.2 0.0081 1.7E-07 61.9 6.2 30 453-482 26-55 (218)
471 PRK13695 putative NTPase; Prov 96.2 0.031 6.8E-07 55.8 10.1 23 460-482 2-24 (174)
472 TIGR02655 circ_KaiC circadian 96.2 0.045 9.8E-07 63.9 12.8 40 454-493 17-60 (484)
473 COG1119 ModF ABC-type molybden 96.2 0.023 5E-07 60.6 9.3 30 453-482 52-81 (257)
474 PRK13833 conjugal transfer pro 96.2 0.0065 1.4E-07 67.4 5.4 70 458-527 144-225 (323)
475 cd03227 ABC_Class2 ABC-type Cl 96.2 0.024 5.3E-07 56.2 9.0 24 457-480 20-43 (162)
476 PRK11650 ugpC glycerol-3-phosp 96.2 0.0032 7E-08 70.6 3.0 28 454-481 26-53 (356)
477 TIGR01526 nadR_NMN_Atrans nico 96.2 0.014 3.1E-07 64.7 8.0 39 459-497 163-201 (325)
478 PRK05541 adenylylsulfate kinas 96.1 0.015 3.3E-07 58.0 7.5 40 456-495 5-47 (176)
479 PRK09452 potA putrescine/sperm 96.1 0.0035 7.6E-08 70.8 3.3 29 453-481 35-63 (375)
480 smart00487 DEXDc DEAD-like hel 96.1 0.055 1.2E-06 52.5 11.3 33 459-491 25-62 (201)
481 PRK13540 cytochrome c biogenes 96.1 0.031 6.7E-07 57.1 9.9 30 453-482 22-51 (200)
482 cd03115 SRP The signal recogni 96.1 0.054 1.2E-06 53.8 11.4 34 460-493 2-38 (173)
483 PRK13894 conjugal transfer ATP 96.1 0.0066 1.4E-07 67.2 5.3 72 457-528 147-230 (319)
484 TIGR00064 ftsY signal recognit 96.1 0.15 3.1E-06 55.4 15.3 37 456-492 70-109 (272)
485 COG5271 MDN1 AAA ATPase contai 96.1 0.013 2.9E-07 74.5 7.9 135 459-616 889-1047(4600)
486 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0055 1.2E-07 61.0 4.1 34 460-495 5-38 (188)
487 COG4088 Predicted nucleotide k 96.1 0.014 2.9E-07 60.9 6.8 23 460-482 3-25 (261)
488 PLN03187 meiotic recombination 96.1 0.021 4.5E-07 64.0 8.9 39 454-492 122-169 (344)
489 TIGR02239 recomb_RAD51 DNA rep 96.1 0.02 4.4E-07 63.3 8.7 40 454-493 92-140 (316)
490 COG2874 FlaH Predicted ATPases 96.1 0.035 7.6E-07 58.2 9.8 127 444-590 12-176 (235)
491 PTZ00202 tuzin; Provisional 96.1 0.053 1.2E-06 62.5 12.0 63 422-493 259-321 (550)
492 PF01745 IPT: Isopentenyl tran 96.1 0.0085 1.8E-07 62.7 5.3 136 460-619 3-142 (233)
493 PRK11432 fbpC ferric transport 96.1 0.0078 1.7E-07 67.4 5.4 30 453-482 27-56 (351)
494 PRK09302 circadian clock prote 96.0 0.067 1.4E-06 62.7 13.3 116 454-586 27-182 (509)
495 PRK08099 bifunctional DNA-bind 96.0 0.016 3.5E-07 66.1 7.8 38 458-495 219-256 (399)
496 PRK11607 potG putrescine trans 96.0 0.015 3.3E-07 65.8 7.5 29 453-481 40-68 (377)
497 TIGR02533 type_II_gspE general 96.0 0.017 3.7E-07 67.4 8.2 96 420-528 217-322 (486)
498 PRK10522 multidrug transporter 96.0 0.0042 9.2E-08 73.1 3.2 30 453-482 344-373 (547)
499 PRK14528 adenylate kinase; Pro 96.0 0.0066 1.4E-07 61.7 4.1 34 460-495 3-36 (186)
500 COG1131 CcmA ABC-type multidru 96.0 0.024 5.1E-07 62.0 8.6 28 455-482 28-55 (293)
No 1
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-80 Score=714.93 Aligned_cols=634 Identities=38% Similarity=0.525 Sum_probs=474.3
Q ss_pred cccccccccchhhcccCCCCCCCC-CCchhHHHHHhhcCCCCcCcccccccchhhhHhhhhccccCcc--chhHHHHHhh
Q 003619 39 SRTNFLHRSFTVLCELSQPGDTSK-PTEEDFVTRVLKENPSQVEPKYLIGERFYSLKERQNLSEKNDV--GIFQSLAEKL 115 (807)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 115 (807)
+.....+|..+.+|..+.....++ ..+.++..+.++.+|++ +.+.+|...+..++.|. +.++. ..
T Consensus 23 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~~~~~k~~~~~~~~~~~s~~~~~~---~~ 90 (774)
T KOG0731|consen 23 ESSRSLRRFSETRSVLLIVRKENGSVAKVGAALGFLKKEPEK---------KLKLRKGASELSEKKNESVGIMED---VK 90 (774)
T ss_pred ccccccccccceeeeecccccccccccchhhhhhhhcccchh---------hccccccchhhcccccccchhhhh---hh
Confidence 355667788888776443334444 88899999999999998 67777777666665544 33333 11
Q ss_pred hcccccccccccCCCCCcccHHHHHHhhcCcccccccccccccchhHHHhhhhcccCcccHHHHHHhhhccceeEEeecC
Q 003619 116 NSKENSKKESDNQNVSGSVYLKDILREYKGKLYVPEQVFGHELSEEEEFHKNVKELPKMSIEEFKKYMESDKVKLLTSKG 195 (807)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (807)
..+.+ ...++.......++.++|.+++.........++ .+.+.++.+. +.+.|+++
T Consensus 91 ~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----~~~~t~~~ 146 (774)
T KOG0731|consen 91 ESKRE----------KEQKSFESELLSSKTKLSRSEEGQELVRAQREE---------NRPLPDMRKR-----FVQSTPKG 146 (774)
T ss_pred ccchh----------hhhcccccccccccccccchhhhhhhhhccccc---------CCCccccccc-----ceecchhH
Confidence 11111 112233344567899999999988776665554 2222232222 67778887
Q ss_pred cccccccccccceeEEeccCCCccccccccceeecChhHHHHHHhhccCCeeEeeccccccccCCCCCCcccccccchhh
Q 003619 196 INGVAFANGYRDFIVDLKDIPGNKKLQRTKWAMRLDDNEAQALLDEYTGPQYEIEKHMTSWVGKLPEYPHPVASSISSRL 275 (807)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (807)
... |...|..+.++.+ .-+-..+.-|.+-|.+.+.+.+.-.. ++...+++..++...-.
T Consensus 147 ~~~--f~~~~~~~~~~~~---~~ei~~~df~~~~le~g~v~~~evv~---~~~~~rv~~~~~~~~~~------------- 205 (774)
T KOG0731|consen 147 LAV--FMEALDLDRVESG---WQEITWRDFKQKLLEKGEVGKLEVVN---PYAVVRVELDRGRIPGD------------- 205 (774)
T ss_pred HHH--HHHHhcccccccc---ceeeeHHHHHHHHhhccceeeEEeec---cceeEEEEEeccccccc-------------
Confidence 766 6666776666654 11111223334444444333222111 23333333333322211
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhccccceEEEEEEEEeccccccccccccccchhhhhhhHHHHHHhhcCCCccccc
Q 003619 276 MVELGMVTAIMAAAAAIVGGFLASAVFAVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKF 355 (807)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (807)
...+++|=.+.+ ++.+.+.+..+.-..++....
T Consensus 206 -----------------------------------~~~~~~~~~i~~------------v~~F~~kl~~a~~~l~~~~~~ 238 (774)
T KOG0731|consen 206 -----------------------------------RLIQKVWFNIRS------------VDNFERKLDEAQRNLGIDTVV 238 (774)
T ss_pred -----------------------------------cceeeEEEEecc------------cchHHHHHHHHHHHhCCCcee
Confidence 122233322222 333334444444444444433
Q ss_pred cccc---CcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC---Cccccccccccccccccc--ccccCCCCCcccCcc
Q 003619 356 YEFY---TFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPK---NFRKWDLWQGIDFSRSKA--EARVDGSTGVKFSDV 427 (807)
Q Consensus 356 ~~~~---~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~F~dV 427 (807)
..++ ..+.+...+..+.|.++.+..+.. +.+... ............|+.+++ +...+..++++|+||
T Consensus 239 ~~pV~~~~~~~~~~~~~~~~pti~~~~~l~~-----l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDV 313 (774)
T KOG0731|consen 239 RVPVTYISESLLDLILGLLLPTILLLGGLLY-----LSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDV 313 (774)
T ss_pred EeeeEEeecchhhhhhhhhhHHHHHHHhHhe-----eeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccc
Confidence 3333 223333344445552222222222 222111 111111112133444444 444567788999999
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHH
Q 003619 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIR 507 (807)
Q Consensus 428 vG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir 507 (807)
+|++++|++|.|++.+|++|+.|+++|++.|+|+||+||||||||+||||+|+|+++||+.+++++|++.++|.+..+++
T Consensus 314 AG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr 393 (774)
T KOG0731|consen 314 AGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVR 393 (774)
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 508 DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 508 ~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
++|..|+.++|||+||||||+++..|++.. ....+++.++++||||.+||++....+|+|+|+||+++.||+|
T Consensus 394 ~lf~~ar~~aP~iifideida~~~~r~G~~-------~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~a 466 (774)
T KOG0731|consen 394 DLFPLARKNAPSIIFIDEIDAVGRKRGGKG-------TGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPA 466 (774)
T ss_pred HHHHHhhccCCeEEEecccccccccccccc-------cCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHH
Confidence 999999999999999999999998885211 1226778999999999999999999999999999999999999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl 666 (807)
|+||||||++|++++|+..+|.+|++.|+++.++. +++|+..+|..|+||+|+||.|+||+|+..|.+++...|+..|+
T Consensus 467 llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~ 546 (774)
T KOG0731|consen 467 LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDL 546 (774)
T ss_pred hcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhH
Confidence 99999999999999999999999999999999986 78889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeecCCccCceeEEecccccccccCC
Q 003619 667 DDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFER 746 (807)
Q Consensus 667 ~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~pRg~~lG~~~~~~~~~~~~~~~t 746 (807)
..|++|++.|...+...++.++++.+|+||+|||+++|+++++ +++.+++|+| |+++||++|.|.+ .++++
T Consensus 547 ~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~-----dpl~kvsIiP-GqalG~a~~~P~~--~~l~s- 617 (774)
T KOG0731|consen 547 EYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHA-----DPLLKVSIIP-GQALGYAQYLPTD--DYLLS- 617 (774)
T ss_pred HHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhcccccc-----CcceeEEecc-CCccceEEECCcc--ccccc-
Confidence 9999999999999899999999999999999999999998877 9999999999 7799999999973 35555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhC-CCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 747 RPQLLHRLQVLLGGRAAEEVIYG-QDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 747 r~~l~~~I~v~LaGRaAEel~fG-~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
+++|+++||+.|||||||+++|| ++||||.+| +++||++|++||.. || |++
T Consensus 618 k~ql~~rm~m~LGGRaAEev~fg~~iTtga~dd-l~kvT~~A~~~V~~-~G-ms~ 669 (774)
T KOG0731|consen 618 KEQLFDRMVMALGGRAAEEVVFGSEITTGAQDD-LEKVTKIARAMVAS-FG-MSE 669 (774)
T ss_pred HHHHHHHHHHHhCcchhhheecCCccCchhhcc-HHHHHHHHHHHHHH-cC-ccc
Confidence 99999999999999999999997 789999888 99999999999998 99 876
No 2
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-79 Score=675.67 Aligned_cols=362 Identities=44% Similarity=0.717 Sum_probs=346.1
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
...+++|+||.|+|++|++|+|++++|++|+.|.++|.+.|+||||+||||||||+||||+|+++++||++.++++|-++
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 003619 498 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (807)
Q Consensus 498 ~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAA 577 (807)
++|.+++++|++|..|+.++||||||||||+++++|... ......+++||||.+||||..+.+||||+|
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~-----------~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS-----------DQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc-----------HHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 999999999999999999999999999999999887531 223678999999999999999999999999
Q ss_pred cCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC
Q 003619 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (807)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~ 657 (807)
||.|+.||+||.||||||++|.+|.||...|.+||+.|++++.+..++|+..||+-|.||+|+||+|++|.|++.|..++
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG 525 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeecCCccCceeEEecc
Q 003619 658 HESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRL 737 (807)
Q Consensus 658 ~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~pRg~~lG~~~~~~~ 737 (807)
...+++.|++.|-+++..|+++++..++++.++..||||.|||+++...... -|++++||.|||.+||.+.+.|.
T Consensus 526 a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A-----~PlhKaTImPRG~sLG~t~~LPe 600 (752)
T KOG0734|consen 526 AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGA-----MPLHKATIMPRGPSLGHTSQLPE 600 (752)
T ss_pred cccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCC-----ccccceeeccCCccccceeecCc
Confidence 9999999999999999999999999999999999999999999999988776 89999999999999999999997
Q ss_pred cccccccCCHHHHHHHHHHHhhHHHHHHHHhCC--CCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 738 DDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQ--DTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 738 ~~~~~~~~tr~~l~~~I~v~LaGRaAEel~fG~--~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
.+.+..+ |.++++++.||||||+|||++||. +||||++| |++||++|+.||+. || |++
T Consensus 601 -~D~~~~T-k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssD-l~qAT~lA~~MVt~-fG-MSd 660 (752)
T KOG0734|consen 601 -KDRYSIT-KAQLLARLDVCMGGRVAEELIFGTDKITSGASSD-LDQATKLARRMVTK-FG-MSD 660 (752)
T ss_pred -cchhhHH-HHHHHHHHHHhhcchHHHHHhccCCcccccccch-HHHHHHHHHHHHHH-cC-ccc
Confidence 5666676 999999999999999999999995 59999999 99999999999998 99 776
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-75 Score=667.07 Aligned_cols=413 Identities=46% Similarity=0.758 Sum_probs=379.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCcccccHHHHHHHHHHHH
Q 003619 363 GLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVR 442 (807)
Q Consensus 363 ~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~ 442 (807)
.+..++..+.|+++.+..+..+.+.. ...+.+ . ..+++++++++...+....++|.|++|++++|++|.|+++
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~-~~~g~g-----~-~~~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVd 167 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQ-AQGGGG-----G-GAFSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVD 167 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCC-----C-cccCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHH
Confidence 44555556666666665444332111 111111 0 1578899999988888999999999999999999999999
Q ss_pred HhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEE
Q 003619 443 YLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIF 522 (807)
Q Consensus 443 ~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILf 522 (807)
++++|..|..+|.+.|+|+||+||||||||+||+|+|+++++||+.+++++|+++++|.++.++|++|.+|++++|||+|
T Consensus 168 fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIF 247 (596)
T COG0465 168 FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIF 247 (596)
T ss_pred HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccC
Q 003619 523 IDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (807)
Q Consensus 523 IDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~l 602 (807)
|||||+++..|+.+.++ .++++++++||||.+||++..+.+|+||++||+|+.+|+||+||||||+.|.++.
T Consensus 248 IDEiDAvGr~Rg~g~Gg--------gnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 248 IDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred EehhhhcccccCCCCCC--------CchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCC
Confidence 99999999988765443 7889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCc
Q 003619 603 PNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGI 682 (807)
Q Consensus 603 Pd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~ 682 (807)
||...|.+|++.|+++.++..++|+..+|+.|+||+++||.|++|+|++.|.++++..|++.|+.+|+++++.|+++++.
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred cchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeecCCccCceeEEecccccccccCCHHHHHHHHHHHhhHHH
Q 003619 683 ELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRA 762 (807)
Q Consensus 683 ~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~pRg~~lG~~~~~~~~~~~~~~~tr~~l~~~I~v~LaGRa 762 (807)
.+++.++..+||||+|||+++.+++.. ++++++||+|||+++||+++.|. ++.++.+ +.+++++|+++|||||
T Consensus 400 vise~ek~~~AYhEaghalv~~~l~~~-----d~v~KvtIiPrG~alG~t~~~Pe-~d~~l~s-k~~l~~~i~~~lgGRa 472 (596)
T COG0465 400 VISEAEKKITAYHEAGHALVGLLLPDA-----DPVHKVTIIPRGRALGYTLFLPE-EDKYLMS-KEELLDRIDVLLGGRA 472 (596)
T ss_pred ccChhhhcchHHHHHHHHHHHHhCCCC-----cccceeeeccCchhhcchhcCCc-ccccccc-HHHHHHHHHHHhCCcH
Confidence 999999999999999999999999988 99999999999999999999997 4567666 9999999999999999
Q ss_pred HHHHHhC-CCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 763 AEEVIYG-QDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 763 AEel~fG-~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
|||++|| ++|||+++| +++||.+|+.||++ || |++
T Consensus 473 AEel~~g~e~ttGa~~D-~~~at~~ar~mVt~-~G-ms~ 508 (596)
T COG0465 473 AEELIFGYEITTGASND-LEKATDLARAMVTE-YG-MSA 508 (596)
T ss_pred hhhhhhcccccccchhh-HHHHHHHHHHhhhh-cC-cch
Confidence 9999999 999999999 99999999999998 99 775
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.3e-65 Score=595.98 Aligned_cols=377 Identities=47% Similarity=0.765 Sum_probs=346.6
Q ss_pred ccccccccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 003619 405 IDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (807)
Q Consensus 405 ~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~ 484 (807)
.++++++++........++|+||+|++++++++.+++.++++++.|..+|...|+|+||+||||||||++|+++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~ 242 (638)
T CHL00176 163 MNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV 242 (638)
T ss_pred cccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56777776666677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc
Q 003619 485 PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (807)
Q Consensus 485 pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd 564 (807)
||+.++++++.+.+.|.+...++.+|..|+...||||||||||.++..++....+ .+.+.++++++||.++|
T Consensus 243 p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~--------~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 243 PFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG--------GNDEREQTLNQLLTEMD 314 (638)
T ss_pred CeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC--------CcHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999998776432222 34567789999999999
Q ss_pred CCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHH
Q 003619 565 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 565 g~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~ 644 (807)
++..+.+++||++||+++.+|++++||||||+.|.+++|+.++|.+||+.++++..+..++++..+|+.|.||+++||++
T Consensus 315 g~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 315 GFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred cccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHH
Confidence 99888899999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeec
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVP 724 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~p 724 (807)
++++|+..|.+++...|+.+|+.+|++++..|.+++. ..++.+++++|+||+|||++++++... +++++|||+|
T Consensus 395 lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~-----~~v~kvtI~p 468 (638)
T CHL00176 395 LLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNH-----DPVQKVTLIP 468 (638)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCC-----CceEEEEEee
Confidence 9999999999999999999999999999999887654 456778899999999999999999887 8999999999
Q ss_pred CCccCceeEEecccccccccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 725 RGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 725 Rg~~lG~~~~~~~~~~~~~~~tr~~l~~~I~v~LaGRaAEel~fG--~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
||+++||+++.|. ++.+..+ +.+++++|+++|||||||+++|| ++||||++| |++||++|+.||++ || |++
T Consensus 469 rg~~~G~~~~~p~-~~~~~~t-~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~D-l~~AT~iA~~mv~~-~G-m~~ 541 (638)
T CHL00176 469 RGQAKGLTWFTPE-EDQSLVS-RSQILARIVGALGGRAAEEVVFGSTEVTTGASND-LQQVTNLARQMVTR-FG-MSS 541 (638)
T ss_pred cCCCCCceEecCC-ccccccc-HHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhH-HHHHHHHHHHHHHH-hC-CCc
Confidence 9999999999886 4455555 99999999999999999999999 579999888 99999999999998 99 774
No 5
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=8.5e-64 Score=572.52 Aligned_cols=380 Identities=49% Similarity=0.830 Sum_probs=350.4
Q ss_pred ccccccccccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 403 QGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+...+++++++...++.+.++|+||+|++++++++++++.++++++.|..+|.++|+|+||+||||||||++|+++|+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 33 RAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 34667888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh
Q 003619 483 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (807)
Q Consensus 483 g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e 562 (807)
+.||+.++++++.+.+.|.+...++.+|..|+..+||||||||||.++.+++....+ ...+...++++||.+
T Consensus 113 ~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~--------~~~~~~~~~~~lL~~ 184 (495)
T TIGR01241 113 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG--------GNDEREQTLNQLLVE 184 (495)
T ss_pred CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC--------ccHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999877543211 344567889999999
Q ss_pred hcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHH
Q 003619 563 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARL 642 (807)
Q Consensus 563 Ldg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL 642 (807)
||++....+++||+|||+++.||++++||||||+.|++++|+.++|.+||+.++++..+..++++..+|..+.|||++||
T Consensus 185 ~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl 264 (495)
T TIGR01241 185 MDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264 (495)
T ss_pred hccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHH
Confidence 99998888999999999999999999999999999999999999999999999998888788899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEe
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISI 722 (807)
Q Consensus 643 ~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI 722 (807)
+++|++|+..|.++++..|+.+|+..|++++..+.......+++.+++++|+||+|||++++++... +++.+++|
T Consensus 265 ~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~-----~~v~~vsi 339 (495)
T TIGR01241 265 ANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDA-----DPVHKVTI 339 (495)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCC-----CceEEEEE
Confidence 9999999999999888899999999999999998877777788889999999999999999999766 78899999
Q ss_pred ecCCccCceeEEecccccccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 723 VPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 723 ~pRg~~lG~~~~~~~~~~~~~~~tr~~l~~~I~v~LaGRaAEel~fG~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
.|||.++||+++.+. ++.... |+.+++++|+++|||||||+++||++|+|+++| |++||++|+.||.+ || |++
T Consensus 340 ~prg~~~G~~~~~~~-~~~~~~-t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~D-l~~At~lA~~mv~~-~G-m~~ 412 (495)
T TIGR01241 340 IPRGQALGYTQFLPE-EDKYLY-TKSQLLAQIAVLLGGRAAEEIIFGEVTTGASND-IKQATNIARAMVTE-WG-MSD 412 (495)
T ss_pred eecCCccceEEecCc-cccccC-CHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHH-HHHHHHHHHHHHHH-hC-CCc
Confidence 999999999998775 334444 599999999999999999999999999999888 99999999999998 99 776
No 6
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.5e-62 Score=575.28 Aligned_cols=378 Identities=43% Similarity=0.752 Sum_probs=345.9
Q ss_pred ccccccccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 003619 405 IDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (807)
Q Consensus 405 ~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~ 484 (807)
+.+.........+.....+|+|+.|.+..++++.+++.++..++.+..++...|+|+||+||||||||++++++|++++.
T Consensus 132 ~af~~~~~~~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 132 MSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred EEeccccccccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45555555555555667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc
Q 003619 485 PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (807)
Q Consensus 485 pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd 564 (807)
||+.++++++.+.+.+.+...++.+|..|+...||||||||+|.++.+++....+ ...+..++++++|.+||
T Consensus 212 ~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g--------~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 212 PFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG--------GHDEREQTLNQMLVEMD 283 (644)
T ss_pred CEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC--------CchHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999877543222 34556789999999999
Q ss_pred CCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHH
Q 003619 565 GFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 565 g~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~ 644 (807)
++..+.+++||+|||+|+.||++++||||||+.|.+++|+.++|.+||+.|+++.++..++|+..+|+.|.||||+||.+
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~ 363 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 363 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHH
Confidence 99988999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeec
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVP 724 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~p 724 (807)
+|++|+..|.++++..|+.+|+..|++++..+..++...+++.+++++|+||+|||+++++++.. +++.+++|+|
T Consensus 364 l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~-----~~~~~v~i~p 438 (644)
T PRK10733 364 LVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEH-----DPVHKVTIIP 438 (644)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCC-----CceeEEEEec
Confidence 99999999999999999999999999999999887777778889999999999999999999877 8899999999
Q ss_pred CCccCceeEEecccccccccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 725 RGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 725 Rg~~lG~~~~~~~~~~~~~~~tr~~l~~~I~v~LaGRaAEel~fG--~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
||.++||+++.|. ++.... |+.+|+++|+++|||||||+++|| ++||||++| |++||+||+.||++ || |++
T Consensus 439 rg~~~g~~~~~~~-~~~~~~-~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~D-l~~AT~lA~~mv~~-~G-ms~ 511 (644)
T PRK10733 439 RGRALGVTFFLPE-GDAISA-SRQKLESQISTLYGGRLAEEIIYGPEHVSTGASND-IKVATNLARNMVTQ-WG-FSE 511 (644)
T ss_pred cCCCcceeEECCC-cccccc-cHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHH-HHHHHHHHHHHHHH-hC-CCc
Confidence 9999999999886 344444 599999999999999999999998 579999888 99999999999998 99 776
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-54 Score=461.26 Aligned_cols=255 Identities=45% Similarity=0.778 Sum_probs=245.8
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
.+++.|.++|+||+|+++++++|+|.+.. +++|++|.++|+.||+|||||||||||||+||||+|++.++.|+.+.+|+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 35788999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI 573 (807)
|+.+|+|++.+-+|++|+.|+..+||||||||||+++.+|.....+ +..+.+.++.+||.+||||++.++|-
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~--------gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTS--------GDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCC--------chHHHHHHHHHHHHhccCCCCCCCeE
Confidence 9999999999999999999999999999999999999998654433 67889999999999999999999999
Q ss_pred EEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
||+|||+++.|||||+||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.+|+.|.|+||+||+++|.+|.+.|
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccCHHHHHHHHHHHhcCC
Q 003619 654 VRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 654 ~rr~~~~It~edl~~Al~rv~~g~ 677 (807)
+|+.+..|+++||..|++++....
T Consensus 373 iR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 373 IRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHhccCeecHHHHHHHHHHHHhcc
Confidence 999999999999999999998654
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=6.8e-51 Score=497.44 Aligned_cols=307 Identities=19% Similarity=0.238 Sum_probs=258.4
Q ss_pred hhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHH-------------------------------
Q 003619 450 FDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL------------------------------- 498 (807)
Q Consensus 450 ~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~------------------------------- 498 (807)
..++|+.+|+||||+||||||||+||+|+|+++++||+.+++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4577999999999999999999999999999999999999999998643
Q ss_pred ----------hhh--hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC
Q 003619 499 ----------VGV--GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (807)
Q Consensus 499 ----------vG~--~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~ 566 (807)
.+. ...+++.+|+.|+.++||||||||||+++.+.. ...++++|+.+|++.
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-----------------~~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-----------------NYLSLGLLVNSLSRD 1764 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-----------------ceehHHHHHHHhccc
Confidence 122 234589999999999999999999999986421 123578999999976
Q ss_pred C---CCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHH--hhcCCCCCc-cCHHHHHhhCCCCcHH
Q 003619 567 D---TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH--ASKVKMSDS-VDLSSYAKNLPGWTGA 640 (807)
Q Consensus 567 ~---~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~--L~~~~l~~d-vdL~~LA~~T~GfSga 640 (807)
. ...+|+||||||+|+.|||||+||||||+.|+++.|+..+|++++... .++..+..+ +|++.+|+.|.|||||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 3 456899999999999999999999999999999999999999998854 345555543 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhccccccccccee
Q 003619 641 RLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRI 720 (807)
Q Consensus 641 DL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~v 720 (807)
||+++|++|+..|+++++..|+.++++.|++|+++|.+.+.. ....+.+++||+||||+++++... +++++|
T Consensus 1845 DLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~---~~~~~~ia~yEiGhAvvq~~L~~~-----~pv~kI 1916 (2281)
T CHL00206 1845 DLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR---SVQDHGILFYQIGRAVAQNVLLSN-----CPIDPI 1916 (2281)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc---CcchhhhhhhHHhHHHHHHhccCC-----CCcceE
Confidence 999999999999999999999999999999999999865422 223345799999999999999877 899999
Q ss_pred EeecC------CccCceeEEecccccccccCCHHHHHHHHHHHhhHHHHHHHHhCCCCcccCCchHHHHHHHHHHHHHhh
Q 003619 721 SIVPR------GQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLAHGIWRIQ 794 (807)
Q Consensus 721 sI~pR------g~~lG~~~~~~~~~~~~~~~tr~~l~~~I~v~LaGRaAEel~fG~~stga~~d~l~~At~lA~~~v~~~ 794 (807)
||.++ +.++||+||.|.+ ..++ +.+++.+|++||||||||++||+..+ .|+.||+.
T Consensus 1917 SIy~~~~~~r~~~~yl~~wyle~~---~~mk-k~tiL~~Il~cLAGraAedlwf~~~~-------------~~~n~It~- 1978 (2281)
T CHL00206 1917 SIYMKKKSCKEGDSYLYKWYFELG---TSMK-KLTILLYLLSCSAGSVAQDLWSLPGP-------------DEKNGITS- 1978 (2281)
T ss_pred EEecCCccccCcccceeEeecCCc---ccCC-HHHHHHHHHHHhhhhhhhhhccCcch-------------hhhcCccc-
Confidence 99532 5677999998852 4444 99999999999999999999997654 35566665
Q ss_pred ccCCC
Q 003619 795 WSYME 799 (807)
Q Consensus 795 ~G~~~ 799 (807)
|||.+
T Consensus 1979 yg~vE 1983 (2281)
T CHL00206 1979 YGLVE 1983 (2281)
T ss_pred ccchh
Confidence 66333
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-47 Score=430.40 Aligned_cols=255 Identities=43% Similarity=0.717 Sum_probs=239.1
Q ss_pred cccccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 412 AEARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 412 ~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
.+....+.++++|+||+|++++|++|++.|.| +++|+.|.++|+.+|+|||||||||||||++|||+|++++.+|+.+.
T Consensus 421 ~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk 500 (693)
T KOG0730|consen 421 LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK 500 (693)
T ss_pred hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc
Confidence 34445778899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 491 ~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
+.++.++|+|++++.++++|.+|+..+|||||+||||+++..|++... ....+++++||++|||+...+
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-----------~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-----------GVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-----------chHHHHHHHHHHHcccccccC
Confidence 999999999999999999999999999999999999999999864322 335688999999999999999
Q ss_pred ceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 571 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 571 ~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
+|+||||||+|+.||+||+||||||+.|+|++||.+.|.+||+.+++++++.+++|+++||..|.||||+||.++|++|+
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~ 649 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAA 649 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC--CCccCHHHHHHHHHHHhcCC
Q 003619 651 LVAVRKG--HESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 651 l~A~rr~--~~~It~edl~~Al~rv~~g~ 677 (807)
..|.++. ...|+.+|+.+|+..+....
T Consensus 650 ~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 650 LLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 9999875 45799999999998776543
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=410.94 Aligned_cols=250 Identities=42% Similarity=0.707 Sum_probs=230.6
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
...|+++|+||+|+++++.+|...|.+ +++|+.|+.+|+..|.|||||||||||||+||+|+|++++.+|+.+.+.+++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 345899999999999999999988877 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
++|+|+++..+|.+|.+|+..+|||||+||+|+|.++|+... ......++|+||++|||+..+.+|.||
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-----------s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-----------SSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-----------chhHHHHHHHHHHHhcccccccceEEE
Confidence 999999999999999999999999999999999999986532 334568899999999999999999999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh--cCCCCCccCHHHHHhhCC--CCcHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS--KVKMSDSVDLSSYAKNLP--GWTGARLAQLVQEAAL 651 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~--~~~l~~dvdL~~LA~~T~--GfSgaDL~~Lv~eAal 651 (807)
||||+|+.+|||++||||||+.+++++|+.++|.+||+.+.+ +.++..++|++.||+.+. ||||+||..||++|..
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 778889999999999877 9999999999999999
Q ss_pred HHHHhCC----------------CccCHHHHHHHHHHHhcCC
Q 003619 652 VAVRKGH----------------ESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 652 ~A~rr~~----------------~~It~edl~~Al~rv~~g~ 677 (807)
.|.++.- ..++..||++|+.++....
T Consensus 732 ~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 9987521 1256779999999887643
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-42 Score=352.66 Aligned_cols=252 Identities=41% Similarity=0.692 Sum_probs=240.4
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.+++|.+++.||+|++-+|+++++.++. +.+.++|++.|+.||+|+|+|||||||||+|++|+|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 4678899999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
+.+|.|++.+-+|+.|..|+.++|+||||||||+++.+|-....+ ...+.+..+.+||.+||||+...+|-|
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg--------adrevqril~ellnqmdgfdq~~nvkv 297 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG--------ADREVQRILIELLNQMDGFDQTTNVKV 297 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc--------ccHHHHHHHHHHHHhccCcCcccceEE
Confidence 999999999999999999999999999999999999988654443 567788999999999999999999999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|.+||+.+.|||+|+||||+|+.|+||+||..+++-++.....++.+.+++|++.+..+-...|++||..+|++|.+.|.
T Consensus 298 imatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~av 377 (408)
T KOG0727|consen 298 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAV 377 (408)
T ss_pred EEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhc
Q 003619 655 RKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~ 675 (807)
+.++-.|...|+++|...+..
T Consensus 378 r~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 378 RENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HhcceeeeHHHHHHHHHhhcC
Confidence 999999999999999987653
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-42 Score=387.05 Aligned_cols=228 Identities=44% Similarity=0.789 Sum_probs=214.9
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
..++++|+||+|.+....+|.+++..+++|+.|..+|+.||+|||||||||||||+||+|+|+++++||+.+++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC----CceE
Q 003619 498 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG----KGVI 573 (807)
Q Consensus 498 ~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~----~~VI 573 (807)
+.|++++++|++|++|+..+|||+||||||++.++|... ..+.-...+.|||+.||++... ..|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-----------qreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-----------QREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-----------HHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 999999999999999999999999999999999998652 2233456789999999988543 6799
Q ss_pred EEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
||+|||+|+.|||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||..|+||.|+||..+|.+|+..|
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVA 411 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 003619 654 VRK 656 (807)
Q Consensus 654 ~rr 656 (807)
+++
T Consensus 412 ikR 414 (802)
T KOG0733|consen 412 IKR 414 (802)
T ss_pred HHH
Confidence 876
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=349.59 Aligned_cols=251 Identities=39% Similarity=0.708 Sum_probs=240.3
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
++.|..+++-|+|++.++++++++++. .++|++|..+|+..|+|+|||||||||||+||+|+|+...+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 455778899999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
.+|.|++.+-+|++|-.|+..+|+|||+||||+++..|.++..+ ++.+.+.++.+||.++|||....++-||
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g--------gdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG--------GDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC--------ccHHHHHHHHHHHHhccccccccceEEE
Confidence 99999999999999999999999999999999999988765444 5677889999999999999999999999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~r 655 (807)
.+||+.+.|||||+||||+|+.|+||+|+.+.|.+||+.|.+++++...+++..+|....|.||+++..+|.+|.++|.+
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCccCHHHHHHHHHHHhc
Q 003619 656 KGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 656 r~~~~It~edl~~Al~rv~~ 675 (807)
+.+-.+|++|++-|+.++..
T Consensus 371 errvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred HhhccccHHHHHHHHHHHHh
Confidence 99999999999999998875
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=350.53 Aligned_cols=252 Identities=40% Similarity=0.710 Sum_probs=239.2
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
+++.|.-+++||+|++.++++|.+.+-. +.+++.|..+|++||+|+|+|||||||||++|||+|...+..|+.+.+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 4677889999999999999999988775 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
+.+|.|.+++.+|+.|..|+..+|+||||||+|+++.+|..... ++..+.+.++.+||.++|||.+...|-|
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek--------~GDREVQRTMLELLNQLDGFss~~~vKv 313 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK--------AGDREVQRTMLELLNQLDGFSSDDRVKV 313 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccc--------cccHHHHHHHHHHHHhhcCCCCccceEE
Confidence 99999999999999999999999999999999999988754221 2567889999999999999999999999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|++||+.+.|||+|+|+||+|+.|+||.|+.+.|.+|++.|.+++...++++++++|+.|.+|+|++.+.+|-+|.+.|.
T Consensus 314 iAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiAL 393 (424)
T KOG0652|consen 314 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIAL 393 (424)
T ss_pred EeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhc
Q 003619 655 RKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~ 675 (807)
+++...|+.+|+.+++..+..
T Consensus 394 Rr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 394 RRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hcccccccHHHHHHHHHHHHH
Confidence 999999999999999987754
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=351.14 Aligned_cols=258 Identities=41% Similarity=0.667 Sum_probs=243.3
Q ss_pred cccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc
Q 003619 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (807)
Q Consensus 414 ~~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s 492 (807)
..++++|.++++||.|+.++++.|+++++. +.+|+.|-.+|+.||+|||||||||||||++|+|+|++.+..|+.+-+|
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 356889999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
+++.+|+|++++-+|++|+.|+....||||+||||++++.|-....+ ...+.+.++.+|+.++|||+.+.++
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~g--------gdnevqrtmleli~qldgfdprgni 317 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAG--------GDNEVQRTMLELINQLDGFDPRGNI 317 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCC--------CcHHHHHHHHHHHHhccCCCCCCCe
Confidence 99999999999999999999999999999999999999877433222 4567888999999999999999999
Q ss_pred EEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003619 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (807)
Q Consensus 573 IVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~ 652 (807)
-|+.+||+|+.|||+|+||||+|+.++|.+||.+.|..||+.|.+.+....++-++-+|+.++..+|++|+.+|.+|.+.
T Consensus 318 kvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmf 397 (435)
T KOG0729|consen 318 KVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF 397 (435)
T ss_pred EEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHhcCCcc
Q 003619 653 AVRKGHESILSSDMDDAVDRLTVGPKR 679 (807)
Q Consensus 653 A~rr~~~~It~edl~~Al~rv~~g~~~ 679 (807)
|++..+...|..|+.+|++++..|-.+
T Consensus 398 airarrk~atekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 398 AIRARRKVATEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876544
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-42 Score=355.94 Aligned_cols=254 Identities=37% Similarity=0.677 Sum_probs=241.6
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.++.|.-+|.||.|++++++++++.++. |.+|+.|..+|++||+||+|||+||||||+||+|+|+.....|+.+-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 5667888999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
+.+|.|.+.+.+|++|..|..++|+|+||||||+++.+|-....+ ...+.++++.+||+++|||+++..|-|
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~Sg--------gerEiQrtmLELLNQldGFdsrgDvKv 327 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDSRGDVKV 327 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCc--------cHHHHHHHHHHHHHhccCccccCCeEE
Confidence 999999999999999999999999999999999999988543332 567788999999999999999999999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|.|||+.+.|||+|+||||+|+.|.|+.||...++.||..|..++.+..+++++.+...-..+||+||.++|.+|.++|.
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhcCC
Q 003619 655 RKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~g~ 677 (807)
|+.+..++.+||..|.+++....
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHhc
Confidence 99999999999999999998643
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-40 Score=376.26 Aligned_cols=252 Identities=38% Similarity=0.641 Sum_probs=226.8
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.++-|+|+|+||+|++++|.++.+-++. |++|++|. .|+++..|||||||||||||++|||+|.++...|+.+.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3567899999999999999999999997 99999985 588889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC--CCCce
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKGV 572 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~--~~~~V 572 (807)
+++|+|++++++|++|++|+..+|||||+||+|+++++|+.... ......+.+.|||.+||++. +...|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD---------SGGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD---------SGGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC---------ccccHHHHHHHHHHHhhcccCCCCCce
Confidence 99999999999999999999999999999999999998864321 11234577899999999997 56789
Q ss_pred EEEeccCccCCCCcccCCCccccEEEeccCC-CHHHHHHHHHHHhhcCCCCCccCHHHHHhhCC-CCcHHHHHHHHHHHH
Q 003619 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAP-NAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-GWTGARLAQLVQEAA 650 (807)
Q Consensus 573 IVIAATN~pd~LDpALlRpGRFdr~I~I~lP-d~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~-GfSgaDL~~Lv~eAa 650 (807)
+||+|||+||.|||+|+||||||+.+++.++ |.+.+..+|+...++..+++++|+.++|+.++ .|||+|+-.+|..|.
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAM 892 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999987 46678889999999999999999999999986 799999999999999
Q ss_pred HHHHHhCC-----------------CccCHHHHHHHHHHHhcCC
Q 003619 651 LVAVRKGH-----------------ESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 651 l~A~rr~~-----------------~~It~edl~~Al~rv~~g~ 677 (807)
+.|+++.- -.|+++|+..|.++..+..
T Consensus 893 l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 893 LAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 99987621 1378999999999887643
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=362.21 Aligned_cols=253 Identities=41% Similarity=0.691 Sum_probs=234.6
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
..+.|.++|+||+|++.++++|++.+.+ +.+|+.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 3567889999999999999999999985 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
...+.|.+...++++|..|+..+||||||||+|.++.++.....+ ...+....+.+++..++++....+++|
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~--------~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------ADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCC--------ccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 999999999999999999999999999999999998766432111 234456788999999999988889999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|+|||+++.+||+++||||||+.|++++|+.++|.+||+.++.+.++..++|+..++..|.||||+||.++|++|.+.|.
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhcC
Q 003619 655 RKGHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~g 676 (807)
++++..|+.+|+..|+.++...
T Consensus 368 r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 368 RKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HcCCCccCHHHHHHHHHHHHhc
Confidence 9999999999999999998654
No 19
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.8e-40 Score=338.19 Aligned_cols=242 Identities=36% Similarity=0.626 Sum_probs=224.0
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
...++++|+||+|++++|+..+-++.+|.+|+.|..+ .|++||+|||||||||++|+|+|+++++|++.+.+.++++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 4457899999999999999999999999999988765 5889999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 003619 497 VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLA 576 (807)
Q Consensus 497 ~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIA 576 (807)
.++|.+.+++++++++|++.+|||+||||+|+++-.|. +..........+|.||++|||...+.+|+.||
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRr----------yQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRR----------YQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhh----------HHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 99999999999999999999999999999999986552 11122234578899999999999999999999
Q ss_pred ccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHH-HHHHHHHHHHHH
Q 003619 577 ATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA-QLVQEAALVAVR 655 (807)
Q Consensus 577 ATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~-~Lv~eAal~A~r 655 (807)
+||+|+.||+++++ ||...|+|.+|+.++|.+|++.+++++++.-+.++..++..|.|+||+||. .++..|...|+.
T Consensus 260 aTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 260 ATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred ecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999999999987 688999999999
Q ss_pred hCCCccCHHHHHHHHHHH
Q 003619 656 KGHESILSSDMDDAVDRL 673 (807)
Q Consensus 656 r~~~~It~edl~~Al~rv 673 (807)
++++.|+.+|++.|+.+.
T Consensus 338 ed~e~v~~edie~al~k~ 355 (368)
T COG1223 338 EDREKVEREDIEKALKKE 355 (368)
T ss_pred hchhhhhHHHHHHHHHhh
Confidence 999999999999999873
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3e-38 Score=352.16 Aligned_cols=256 Identities=45% Similarity=0.757 Sum_probs=235.6
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
..+.+.++|+||+|+++++++|++.+.. +.+|+.|..+|+.+|+++||+||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 3456789999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
...+.|.+...++.+|..|+...||||||||+|.++..+...... ...+...++.+++.+++++....+++|
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~--------~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC--------ccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 999999999999999999999999999999999998776542211 234556778899999999888889999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|+|||+++.+|++++||||||+.|++++|+.++|.+||+.++++..+..++++..+|..|.||+|+||+++|++|...|.
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~ 353 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAI 353 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhcCCcc
Q 003619 655 RKGHESILSSDMDDAVDRLTVGPKR 679 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~g~~~ 679 (807)
+++...|+.+||.+|++++.....+
T Consensus 354 ~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 354 RDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HcCCCCcCHHHHHHHHHHHhccccc
Confidence 9999999999999999999765443
No 21
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-39 Score=343.97 Aligned_cols=249 Identities=35% Similarity=0.582 Sum_probs=224.0
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
+....++++|+||+|++++|+-|+|.|-. +..|+.|+.+ .+|-+|||++||||||||+||+|+|.+++..|+.++.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 44566789999999999999999999886 8899988753 578899999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC----
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG---- 569 (807)
Q Consensus 494 l~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~---- 569 (807)
+.++|-|++++.+|-+|+.|+.++|++|||||||+|+.+|+... .++.....-++||.+|||....
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~----------EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSS----------EHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCcc----------chhHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999999999999999999886531 3445566778999999998542
Q ss_pred CceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHH
Q 003619 570 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (807)
Q Consensus 570 ~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eA 649 (807)
+-|+|+|+||.|+.||+|++| ||...|+||+|+.++|..+|+..++.....++++++.++..+.||||+||.++|++|
T Consensus 351 k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 338999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC-----------------CccCHHHHHHHHHHHhcC
Q 003619 650 ALVAVRKGH-----------------ESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 650 al~A~rr~~-----------------~~It~edl~~Al~rv~~g 676 (807)
.+.+.|+.- ..|+.+||+.|+.++...
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 999987521 247888999998887654
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=351.83 Aligned_cols=252 Identities=40% Similarity=0.712 Sum_probs=233.0
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
++.|.++|+||+|+++++++|++++.. +.+|+.|..+|+.+|+++||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 455779999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
+.+.|.+...++.+|..|....||||||||||.++.++.....+ ...+...++.++|..++++....++.||
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg--------g~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG--------GEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc--------ccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 99999999999999999999999999999999998766432111 2344567788999999999888889999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~r 655 (807)
+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++|+..++..+.|+|++||+++|++|+..|.+
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr 406 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hCCCccCHHHHHHHHHHHhcC
Q 003619 656 KGHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 656 r~~~~It~edl~~Al~rv~~g 676 (807)
+++..|+.+|+..|++++...
T Consensus 407 ~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 407 ERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred hcCCccCHHHHHHHHHHHHhh
Confidence 999999999999999998653
No 23
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=351.11 Aligned_cols=229 Identities=40% Similarity=0.691 Sum_probs=217.3
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
-.+.+++|+||+|+.++|+.|++.+.| -+.|..|....++.+.|||||||||||||+||.|+|..++..|+.+.++++.
T Consensus 659 ~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 659 VKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred cccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 344569999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
++|.|.+++.+|++|.+|+..+|||||+||+|+++++|+....+. ..+.+||||++|||.+.-.+|.|+
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV-----------TDRVVNQlLTelDG~Egl~GV~i~ 807 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV-----------TDRVVNQLLTELDGAEGLDGVYIL 807 (952)
T ss_pred HHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc-----------hHHHHHHHHHhhccccccceEEEE
Confidence 999999999999999999999999999999999999998765553 346789999999999999999999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~r 655 (807)
|||.+|+.|||||+||||+|+.++.+.|+..+|.+|++........+.++|++.+|..|+||||+||..++..|.+.|..
T Consensus 808 aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh 887 (952)
T KOG0735|consen 808 AATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVH 887 (952)
T ss_pred EecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred h
Q 003619 656 K 656 (807)
Q Consensus 656 r 656 (807)
+
T Consensus 888 ~ 888 (952)
T KOG0735|consen 888 E 888 (952)
T ss_pred H
Confidence 4
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=347.47 Aligned_cols=250 Identities=46% Similarity=0.722 Sum_probs=231.3
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
.....+.++|+|++|++.+++.+++.+.+ ++.++.|...++++++|+||+||||||||+||+++|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 33456789999999999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI 573 (807)
+.++|+|+++++++.+|..|+..+||||||||+|++...++....+ .....++++|.+|++.....+|+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~-----------~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG-----------SGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch-----------HHHHHHHHHHHHhcCCCccCceE
Confidence 9999999999999999999999999999999999999888643221 12578999999999999999999
Q ss_pred EEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCC--CCccCHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM--SDSVDLSSYAKNLPGWTGARLAQLVQEAAL 651 (807)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l--~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal 651 (807)
||+|||+|+.+|++++||||||+.+++++||.++|.+||+.++++... ..++|+..+++.|.||+++||..+|++|++
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~ 460 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAAL 460 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999995544 578999999999999999999999999999
Q ss_pred HHHHhC-CCccCHHHHHHHHHHHhc
Q 003619 652 VAVRKG-HESILSSDMDDAVDRLTV 675 (807)
Q Consensus 652 ~A~rr~-~~~It~edl~~Al~rv~~ 675 (807)
.+.++. ...|+.+|+.+|+.+..+
T Consensus 461 ~~~~~~~~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 461 EALREARRREVTLDDFLDALKKIKP 485 (494)
T ss_pred HHHHHhccCCccHHHHHHHHHhcCC
Confidence 999988 778999999999998443
No 25
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-36 Score=361.93 Aligned_cols=250 Identities=43% Similarity=0.753 Sum_probs=229.3
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
...+.++|+||+|++++|++|++.+.+ +.+++.+..+|+++|+|+||+||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 345788999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
+.|+|.++..++.+|..|+...||||||||||.+++.++.... .......+++||.+||++....+++||
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~----------~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD----------TSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC----------ccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 9999999999999999999999999999999999987753221 123456889999999999888899999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~r 655 (807)
+|||+|+.||++++||||||+.|++++|+.++|.+||+.+.++.++..++|+..+|..|.||||+||.++|++|+..|.+
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~ 674 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALR 674 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hC------------------CCccCHHHHHHHHHHHhcC
Q 003619 656 KG------------------HESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 656 r~------------------~~~It~edl~~Al~rv~~g 676 (807)
+. ...|+.+|+.+|+.++.+.
T Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 675 ESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 42 1268999999999887654
No 26
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1e-35 Score=328.67 Aligned_cols=250 Identities=47% Similarity=0.786 Sum_probs=229.7
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
..+.+.++|+||+|+++++++|++.+.. +.+++.|..+|+.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 3456789999999999999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
...+.|.....++.+|..++...|+||||||+|.+...+.....+ ...+....+.+++.+++++....++.|
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~--------~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS--------GDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC--------ccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 999999999999999999999999999999999998765432211 234456778899999999877788999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|+|||+++.+|++++|||||++.|+++.|+.++|.+||+.++.+..+..++++..++..+.||+|+||.++|++|...|.
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAI 344 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 003619 655 RKGHESILSSDMDDAVDRL 673 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv 673 (807)
++++..|+.+|+..|++++
T Consensus 345 ~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 345 REERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HhCCCccCHHHHHHHHHHh
Confidence 9999999999999999875
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.7e-35 Score=334.59 Aligned_cols=243 Identities=27% Similarity=0.412 Sum_probs=212.2
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~ 498 (807)
.+.++|+||+|++.+|++|++....+ +.....+|+++|+|+||+||||||||++|+++|++++.|++.++++.+.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999998765543 2344578999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 003619 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (807)
Q Consensus 499 vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAAT 578 (807)
+|.++.+++.+|..|+..+||||||||||.+...++... ........++.++..|+. ...+|+|||||
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~----------d~~~~~rvl~~lL~~l~~--~~~~V~vIaTT 367 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG----------DSGTTNRVLATFITWLSE--KKSPVFVVATA 367 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC----------CchHHHHHHHHHHHHHhc--CCCceEEEEec
Confidence 999999999999999999999999999999876543211 112345677888888874 35679999999
Q ss_pred CccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC--CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHh
Q 003619 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK 656 (807)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~--~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr 656 (807)
|+++.||++++|+||||+.+++++|+.++|.+||+.++.+.... .+.|+..+|+.|.||||+||+++|++|+..|..+
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999886533 4788999999999999999999999999999876
Q ss_pred CCCccCHHHHHHHHHHHhcC
Q 003619 657 GHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 657 ~~~~It~edl~~Al~rv~~g 676 (807)
+ ..++.+|+..|+.+..+.
T Consensus 448 ~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 448 K-REFTTDDILLALKQFIPL 466 (489)
T ss_pred C-CCcCHHHHHHHHHhcCCC
Confidence 5 569999999999888753
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=317.01 Aligned_cols=229 Identities=37% Similarity=0.622 Sum_probs=206.6
Q ss_pred cccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc
Q 003619 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (807)
Q Consensus 414 ~~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s 492 (807)
+++.++|+++|+||+|++.+|+.|+|.+.. ++.|++|.. +-.|-+|+||+|||||||++||+|+|.+++..|+.++.+
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSS 200 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 200 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehH
Confidence 356788999999999999999999998876 899988853 345678999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC-CCc
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKG 571 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~-~~~ 571 (807)
+++++|.|++++.++.+|+.|+.+.|+||||||||.+++.|+++ .++...+.-.+||.+|.|... +++
T Consensus 201 DLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-----------EseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 DLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-----------ESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-----------chHHHHHHHHHHHHhhhccccCCCc
Confidence 99999999999999999999999999999999999999988754 233345566789999999854 568
Q ss_pred eEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 572 VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
|+|+++||-|+.||.|++| ||++.|+||+|+...|..+++.|+.+.+.. .+.|+..++++|+||||+||.-+++.|.
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 999999999999999999999999887655 5678999999999999999999999999
Q ss_pred HHHHHh
Q 003619 651 LVAVRK 656 (807)
Q Consensus 651 l~A~rr 656 (807)
+.-.|+
T Consensus 348 mePvRk 353 (439)
T KOG0739|consen 348 MEPVRK 353 (439)
T ss_pred hhhHHH
Confidence 888765
No 29
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=317.85 Aligned_cols=252 Identities=40% Similarity=0.673 Sum_probs=236.7
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.+....++|+++.|.-.+..++++.+.. +.+|++|.+.|+++|++++||||||||||++|+++|...+++|+.+..+++
T Consensus 123 ~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l 202 (388)
T KOG0651|consen 123 HEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL 202 (388)
T ss_pred hcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh
Confidence 4556779999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
.+.+.|+.++.+|+.|..|+...|||||+||||++++++..... ..+++.+.++..|+.+|++++....|-+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T--------s~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT--------SSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc--------chhHHHHHHHHHHHHhhccchhcccccE
Confidence 99999999999999999999999999999999999988733221 2678889999999999999999999999
Q ss_pred EeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 575 LAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 575 IAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
|+|||+|+.|||+|+||||+|+.+++|+|+...|..|++.|.+.+.....+|.+.+.+.++||+|+|++++|.+|-..|.
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~ 354 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAI 354 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccccccccc
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHhc
Q 003619 655 RKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 655 rr~~~~It~edl~~Al~rv~~ 675 (807)
+..+..+..+|+..++.++..
T Consensus 355 ~~~~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 355 PEERDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred chhhHHHhHHHHHHHHHHHHH
Confidence 999999999999999887753
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=318.27 Aligned_cols=229 Identities=38% Similarity=0.628 Sum_probs=209.1
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lG-l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s 492 (807)
+....-.++|+||.|++++++.|++.+.. ++.|+.|..-+ +++++||||+||||||||++|+|+|.+++.+|+.++++
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 34556789999999999999999999886 99999996333 67999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc-
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG- 571 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~- 571 (807)
.+.++|.|++.+.++.+|..|.+-+||||||||+|++.+.|+.. .++.....-++++..+||+.++.+
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~-----------dHEa~a~mK~eFM~~WDGl~s~~~~ 230 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST-----------DHEATAMMKNEFMALWDGLSSKDSE 230 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc-----------hHHHHHHHHHHHHHHhccccCCCCc
Confidence 99999999999999999999999999999999999999887421 334444556799999999987665
Q ss_pred -eEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 572 -VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 572 -VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
|+|+||||+|..+|.|++| |+.+.++|++|+.++|.+||+..+++.++++++|+.++|++|.||||.||.++|+.|+
T Consensus 231 rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 003619 651 LVAVRK 656 (807)
Q Consensus 651 l~A~rr 656 (807)
...+++
T Consensus 309 ~~~ire 314 (386)
T KOG0737|consen 309 LRPIRE 314 (386)
T ss_pred HhHHHH
Confidence 988765
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.1e-32 Score=314.51 Aligned_cols=255 Identities=33% Similarity=0.593 Sum_probs=208.3
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------- 485 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p-------- 485 (807)
..++.|.++|+||+|++++++++++.+.. +.+|+.|..+|+++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 34667889999999999999999999886 899999999999999999999999999999999999998654
Q ss_pred --EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHH
Q 003619 486 --FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (807)
Q Consensus 486 --fi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~L 559 (807)
|+.+.++++.+.+.|.++..++.+|..|+.. .||||||||+|.++.+++... .++.....+++|
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~----------s~d~e~~il~~L 321 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV----------SSDVETTVVPQL 321 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc----------cchHHHHHHHHH
Confidence 5667778888999999999999999988764 699999999999987764321 112234678999
Q ss_pred HHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhc-CCCC---------CccCHHH
Q 003619 560 LIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-VKMS---------DSVDLSS 629 (807)
Q Consensus 560 L~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~-~~l~---------~dvdL~~ 629 (807)
|..||++....+++||+|||+++.|||+++||||||.+|+|++|+.++|.+||+.++.. .++. ...++..
T Consensus 322 L~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~a 401 (512)
T TIGR03689 322 LSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAA 401 (512)
T ss_pred HHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999864 2331 0111222
Q ss_pred HHhh-----------------------------CCCCcHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcC
Q 003619 630 YAKN-----------------------------LPGWTGARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 630 LA~~-----------------------------T~GfSgaDL~~Lv~eAal~A~rr----~~~~It~edl~~Al~rv~~g 676 (807)
+++. +..+||++|+++|.+|...|+++ +...|+.+|+..|+..-...
T Consensus 402 l~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 402 LIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred HHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 2211 34578888888888888887765 34578888888888776554
Q ss_pred Ccc
Q 003619 677 PKR 679 (807)
Q Consensus 677 ~~~ 679 (807)
.+.
T Consensus 482 ~~~ 484 (512)
T TIGR03689 482 SED 484 (512)
T ss_pred ccc
Confidence 443
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=295.35 Aligned_cols=241 Identities=40% Similarity=0.683 Sum_probs=223.0
Q ss_pred CCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~ 498 (807)
+.+. .+++|.......+++.+.. +.+|..+...|+++|+|+|+|||||||||.+++++|++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 7899999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhCC-CcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 003619 499 VGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (807)
Q Consensus 499 vG~~~~~ir~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAA 577 (807)
.|++++.+|..|+.|.+.+ |+++||||+|.+++++... ......+..+++..||+.....+++||++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~------------~~~e~Rv~sqlltL~dg~~~~~~vivl~a 326 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA------------DDVESRVVSQLLTLLDGLKPDAKVIVLAA 326 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc------------chHHHHHHHHHHHHHhhCcCcCcEEEEEe
Confidence 9999999999999999999 9999999999999887542 11245677899999999998899999999
Q ss_pred cCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC
Q 003619 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (807)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~ 657 (807)
||+|+.||++++| ||||+.+.+..|+..+|.+|++.+.+++++..++++..+|..|+||+|+||..+|++|...+.++
T Consensus 327 tnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~- 404 (693)
T KOG0730|consen 327 TNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR- 404 (693)
T ss_pred cCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-
Confidence 9999999999999 99999999999999999999999999999998899999999999999999999999999999887
Q ss_pred CCccCHHHHHHHHHHHhcCCcc
Q 003619 658 HESILSSDMDDAVDRLTVGPKR 679 (807)
Q Consensus 658 ~~~It~edl~~Al~rv~~g~~~ 679 (807)
+++++..|..++.+...+
T Consensus 405 ----~~~~~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 405 ----TLEIFQEALMGIRPSALR 422 (693)
T ss_pred ----hHHHHHHHHhcCCchhhh
Confidence 888999998887664433
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=5.6e-30 Score=306.32 Aligned_cols=247 Identities=44% Similarity=0.749 Sum_probs=222.4
Q ss_pred CCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
.+.++|+||+|++++++.+++++.. +.+|+.|+.+|+.+++++||+||||||||++|+++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 003619 498 LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAA 577 (807)
Q Consensus 498 ~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAA 577 (807)
+.|.....++.+|+.|....|+||||||||.+..+++.... ......+++|+..++++.....++||++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~-----------~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG-----------EVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc-----------hHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 99999999999999999999999999999999877643211 1224567889999998888888999999
Q ss_pred cCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC
Q 003619 578 TNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (807)
Q Consensus 578 TN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~ 657 (807)
||+++.+|++++|+|||++.+.++.|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..++++|+..+.++.
T Consensus 321 tn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~ 400 (733)
T TIGR01243 321 TNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRF 400 (733)
T ss_pred cCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999998887642
Q ss_pred -------------------CCccCHHHHHHHHHHHhcC
Q 003619 658 -------------------HESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 658 -------------------~~~It~edl~~Al~rv~~g 676 (807)
...++.+|+..|+..+...
T Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 401 IREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred hhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 1247789999999877654
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-31 Score=291.84 Aligned_cols=251 Identities=33% Similarity=0.561 Sum_probs=214.0
Q ss_pred CCCCCcccCcc--cccHHHHHHH-HH-HHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-CCEEEEeC
Q 003619 417 DGSTGVKFSDV--AGIDEAVEEL-QE-LVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-VPFYQMAG 491 (807)
Q Consensus 417 ~~~~~v~F~dV--vG~devkeeL-~e-iV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-~pfi~Is~ 491 (807)
.-.|...|+++ +|++..-..+ ++ +...+-.|+...++|++.-+|+|||||||||||++||.+..-++ .+--.+|+
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 44577889985 4888765554 33 33447789999999999999999999999999999999999885 45566899
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhC--------CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 492 SEFVEVLVGVGSARIRDLFKRAKVN--------KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 492 sel~~~~vG~~~~~ir~lF~~A~~~--------~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
++++++|+|+++.++|.+|..|... .-.||++||||+++.+|++..++ .....+.+||||.-|
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~---------TGVhD~VVNQLLsKm 361 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS---------TGVHDTVVNQLLSKM 361 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC---------CCccHHHHHHHHHhc
Confidence 9999999999999999999998432 22499999999999998764332 223567899999999
Q ss_pred cCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC----CCCCccCHHHHHhhCCCCcH
Q 003619 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMSDSVDLSSYAKNLPGWTG 639 (807)
Q Consensus 564 dg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~----~l~~dvdL~~LA~~T~GfSg 639 (807)
||.+.-.+++||+.||+.+.+|+||+|||||..++++.+||...|.+||+.|..++ .+..++|+.++|..|..|||
T Consensus 362 DGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 362 DGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred ccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999988764 46689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhC---------------CCccCHHHHHHHHHHHhcC
Q 003619 640 ARLAQLVQEAALVAVRKG---------------HESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 640 aDL~~Lv~eAal~A~rr~---------------~~~It~edl~~Al~rv~~g 676 (807)
++|+.+++.|...|..+. .-.|+.+|+..|++.+.+.
T Consensus 442 AEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 442 AELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred hHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 999999999998887542 1248999999999987653
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-30 Score=306.87 Aligned_cols=250 Identities=38% Similarity=0.657 Sum_probs=222.2
Q ss_pred CCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeCc
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 492 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~s 492 (807)
...+.|++|+|++.+++.|+|.+.. +..|+.|..+++.||+|+|++||||||||+.|+++|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 3568999999999999999999987 999999999999999999999999999999999999877 4667777889
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
+..++|+|+.+++++.+|+.|+.+.|+|+|+||||-|++.|+.. ..+...+.+..||..|||++.++.|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-----------qEqih~SIvSTLLaLmdGldsRgqV 407 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-----------QEQIHASIVSTLLALMDGLDSRGQV 407 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-----------HHHhhhhHHHHHHHhccCCCCCCce
Confidence 99999999999999999999999999999999999999887532 3445667788999999999999999
Q ss_pred EEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003619 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAAL 651 (807)
Q Consensus 573 IVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAal 651 (807)
+||+|||+++.+||+|+||||||+.+++++|+.+.|.+|+..|-++..-. ...-+..+|..+.||-|+||+.+|.+|++
T Consensus 408 vvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal 487 (1080)
T KOG0732|consen 408 VVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAAL 487 (1080)
T ss_pred EEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998876533 22237789999999999999999999999
Q ss_pred HHHHhCC----------------CccCHHHHHHHHHHHhcCCcc
Q 003619 652 VAVRKGH----------------ESILSSDMDDAVDRLTVGPKR 679 (807)
Q Consensus 652 ~A~rr~~----------------~~It~edl~~Al~rv~~g~~~ 679 (807)
.+.++.- ..|...|+-.|+.+......+
T Consensus 488 ~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 488 IALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred hhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 9987632 236778888898888775544
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.9e-29 Score=274.83 Aligned_cols=262 Identities=18% Similarity=0.197 Sum_probs=195.3
Q ss_pred CcccCcc-cccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 003619 421 GVKFSDV-AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 421 ~v~F~dV-vG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~v 499 (807)
..+|+++ .|+--.+.-+..++..+..- ....+|+++|.+++||||||||||++|+++|++++++++.++++++.+.|+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4567787 56655555555444332111 112367899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHh-----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH-HHHHHHhhcCC-------
Q 003619 500 GVGSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT-LNQLLIELDGF------- 566 (807)
Q Consensus 500 G~~~~~ir~lF~~A~~-----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t-Ln~LL~eLdg~------- 566 (807)
|++++.+|++|..|.. .+||||||||||++++++.... .....+. ..+||..+|+.
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~-----------~tv~~qiV~~tLLnl~D~p~~v~l~G 258 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ-----------YTVNNQMVNGTLMNIADNPTNVSLGG 258 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC-----------cchHHHHHHHHHHHHhcCCccccccc
Confidence 9999999999999975 4699999999999998774211 1111233 35777777752
Q ss_pred -----CCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCC----C
Q 003619 567 -----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG----W 637 (807)
Q Consensus 567 -----~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~G----f 637 (807)
....+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..++ ..|+..++..++| |
T Consensus 259 ~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df 335 (413)
T PLN00020 259 DWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDF 335 (413)
T ss_pred cccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchh
Confidence 34567999999999999999999999999976 5799999999999999988776 5789999999887 5
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHH
Q 003619 638 TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 705 (807)
Q Consensus 638 SgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~l 705 (807)
.|+--..+..++...-+.+- ..+.+- +...+..+............-.+-|.|+.++..-
T Consensus 336 ~GAlrar~yd~~v~~~i~~~----g~~~~~----~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq 395 (413)
T PLN00020 336 FGALRARVYDDEVRKWIAEV----GVENLG----KKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQ 395 (413)
T ss_pred hhHHHHHHHHHHHHHHHHHh----hHHHHH----HHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 66666666666654443321 122222 2222333334556666666778999999988753
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-28 Score=271.74 Aligned_cols=247 Identities=34% Similarity=0.528 Sum_probs=209.9
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
+....+.+.|+|+.|++.+++.+.+.+.+ +..|+.|..+. .+++++||.||||+|||+|++|+|.+++..|+.++++.
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 34555679999999999999999999998 67788886543 46679999999999999999999999999999999999
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC--CCCc
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--TGKG 571 (807)
Q Consensus 494 l~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~--~~~~ 571 (807)
+.++|+|.++..++.+|..|+..+|+|+||||+|.+..+|... .++.......++|.++++.. ..++
T Consensus 222 LtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~-----------e~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 222 LTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN-----------EHESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred hhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc-----------ccccchhhhhHHHhhhccccCCCCCe
Confidence 9999999999999999999999999999999999999888543 22233455667777777663 3458
Q ss_pred eEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCC-CCccCHHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 572 VIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM-SDSVDLSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 572 VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l-~~dvdL~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
|+||+|||+|+.+|.+++| ||.+.+++++|+.+.|..+|+..+.+.+. ..+.|++.+++.|.||++.||.++|.+|+
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~ 368 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAA 368 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 9999999999999999999 99999999999999999999999987633 35578999999999999999999999998
Q ss_pred HHHHHhCC-------------CccCHHHHHHHHHHHhc
Q 003619 651 LVAVRKGH-------------ESILSSDMDDAVDRLTV 675 (807)
Q Consensus 651 l~A~rr~~-------------~~It~edl~~Al~rv~~ 675 (807)
+--.+... ..|+..|+..|+..+..
T Consensus 369 ~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 369 MGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred cCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcc
Confidence 65544322 34666777777776654
No 38
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.92 E-value=5.5e-25 Score=227.13 Aligned_cols=129 Identities=33% Similarity=0.531 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHHhhhcccccccccceeEeecCCccCceeEEecccccc
Q 003619 662 LSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDES 741 (807)
Q Consensus 662 t~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~lL~~~~~~~~~~v~~vsI~pRg~~lG~~~~~~~~~~~ 741 (807)
|++||.+|++++..|.+++...+++.+++++|+||+||||++++++.. +++.++||+|||.++|++.+.|. ++.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~-----~~v~~vsi~prg~~~G~~~~~~~-~~~ 74 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPA-----DPVSKVSIVPRGSALGFTQFTPD-EDR 74 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS--------EEEEESSTTCCCCHCCEECHH-TT-
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhccc-----ccEEEEEEecCCCcceeEEeccc-hhc
Confidence 578999999999999998777889999999999999999999999876 78999999999999999999886 343
Q ss_pred cccCCHHHHHHHHHHHhhHHHHHHHHhC--CCCcccCCchHHHHHHHHHHHHHhhccCCCC
Q 003619 742 YMFERRPQLLHRLQVLLGGRAAEEVIYG--QDTSRASVNYLADASWLAHGIWRIQWSYMEN 800 (807)
Q Consensus 742 ~~~~tr~~l~~~I~v~LaGRaAEel~fG--~~stga~~d~l~~At~lA~~~v~~~~G~~~~ 800 (807)
+.. |+.+++++|+++|||||||+++|| ++|+|+++| |++||.+|++||.+ || |++
T Consensus 75 ~~~-t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~D-L~~At~iA~~mv~~-~G-m~~ 131 (213)
T PF01434_consen 75 YIR-TRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSD-LQQATEIARKMVAS-YG-MGD 131 (213)
T ss_dssp SS--BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHH-HHHHHHHHHHHHHT-ST--TT
T ss_pred ccc-cHHHHHhhHHHHHHHHHHHHhhcCcceecccchhH-HHHHHHHHHHHHHH-hC-CCC
Confidence 444 499999999999999999999999 899999888 99999999999998 99 766
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.84 E-value=1.1e-19 Score=192.64 Aligned_cols=212 Identities=18% Similarity=0.269 Sum_probs=155.7
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEeCc
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGS 492 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~---p~gVLL~GPPGTGKT~LArALA~el-------g~pfi~Is~s 492 (807)
.+++++|++++|+.+++++.++.........|..+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 46789999999999999999865555545566553 3468999999999999999999864 3478899999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
++...++|.....++++|..+. ++||||||+|.|....+ .......++.|+..|+.. ..++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~--------------~~~~~~~i~~Ll~~~e~~--~~~~ 144 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE--------------KDFGKEAIDTLVKGMEDN--RNEF 144 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc--------------cchHHHHHHHHHHHHhcc--CCCE
Confidence 9999999999888999998764 57999999999863211 011234466777777753 3445
Q ss_pred EEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhh---------CCCC
Q 003619 573 IFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN---------LPGW 637 (807)
Q Consensus 573 IVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~---------T~Gf 637 (807)
++|++++..+ .++|++.+ ||+..|+++.++.+++.+|++.++......-+.+ +..++.. ...-
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~g 222 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFS 222 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCc
Confidence 6665554322 37889998 9999999999999999999999987654432222 3333211 1123
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 003619 638 TGARLAQLVQEAALVAVR 655 (807)
Q Consensus 638 SgaDL~~Lv~eAal~A~r 655 (807)
+++.+++++..|......
T Consensus 223 n~R~~~n~~e~a~~~~~~ 240 (261)
T TIGR02881 223 NARYVRNIIEKAIRRQAV 240 (261)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788999999988766543
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=7.1e-20 Score=197.20 Aligned_cols=211 Identities=18% Similarity=0.277 Sum_probs=156.5
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEeCchh
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPP---HGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEF 494 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p---~gVLL~GPPGTGKT~LArALA~el-------g~pfi~Is~sel 494 (807)
++++|++++|+++++++.++..++.+...|..++ .++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4799999999999999998777777777887654 358999999999999999999875 236999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
...+.|.+....+.+|+.|. ++||||||+|.+...+.. .......+..|+..|+.. ..+++|
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-------------~~~~~e~~~~L~~~me~~--~~~~~v 164 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-------------RDYGSEAIEILLQVMENQ--RDDLVV 164 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-------------cchHHHHHHHHHHHHhcC--CCCEEE
Confidence 99999988877788887753 469999999998643211 011233456666666642 356778
Q ss_pred EeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC--CccC---HHHHHhh--CCCC-cHHH
Q 003619 575 LAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS--DSVD---LSSYAKN--LPGW-TGAR 641 (807)
Q Consensus 575 IAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~--~dvd---L~~LA~~--T~Gf-SgaD 641 (807)
|++++... .++|++.+ ||+..|+|++++.+++.+|++.++.+.... ++.. ...+.+. .+.+ ++++
T Consensus 165 I~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~ 242 (287)
T CHL00181 165 IFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARS 242 (287)
T ss_pred EEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHH
Confidence 88776422 34689998 999999999999999999999999765433 2211 1222222 2333 4899
Q ss_pred HHHHHHHHHHHHHH
Q 003619 642 LAQLVQEAALVAVR 655 (807)
Q Consensus 642 L~~Lv~eAal~A~r 655 (807)
+++++..|...-..
T Consensus 243 vrn~ve~~~~~~~~ 256 (287)
T CHL00181 243 VRNALDRARMRQAN 256 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988765543
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=1.4e-19 Score=194.53 Aligned_cols=210 Identities=17% Similarity=0.251 Sum_probs=159.3
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCC---CceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEEeCchhH
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKP---PHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQMAGSEFV 495 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~---p~gVLL~GPPGTGKT~LArALA~elg-------~pfi~Is~sel~ 495 (807)
+++|++++|+++.+++.++..++.+.+.|+.+ +.+++|+||||||||++|+++|+.+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888774 44899999999999999999988662 379999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
..+.|.+...++.+|+.|. +++|||||++.+...+.. .......++.|+..|+. ...+++||
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-------------~~~~~~~~~~Ll~~le~--~~~~~~vI 164 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-------------RDYGQEAIEILLQVMEN--QRDDLVVI 164 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-------------cchHHHHHHHHHHHHhc--CCCCEEEE
Confidence 8899988888888888764 479999999998643211 01122345566677763 23567788
Q ss_pred eccCcc--CC---CCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhh-------CCCCcHHHH
Q 003619 576 AATNRR--DL---LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN-------LPGWTGARL 642 (807)
Q Consensus 576 AATN~p--d~---LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~-------T~GfSgaDL 642 (807)
++++.. +. ++|++.+ ||+..|+|++++.+++.+|++.++++....-+.+ +..+... ..--+++++
T Consensus 165 ~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~l 242 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSI 242 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence 877643 32 5899999 9999999999999999999999998754332212 2333332 111268999
Q ss_pred HHHHHHHHHHHHH
Q 003619 643 AQLVQEAALVAVR 655 (807)
Q Consensus 643 ~~Lv~eAal~A~r 655 (807)
++++..|......
T Consensus 243 rn~ve~~~~~~~~ 255 (284)
T TIGR02880 243 RNAIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998766554
No 42
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=7.5e-20 Score=170.60 Aligned_cols=130 Identities=46% Similarity=0.727 Sum_probs=112.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCC-CcEEEeccchhhhhhhcCcccC
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK-PSVIFIDEIDALATRRQGIFKD 539 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~-PsILfIDEID~L~~~r~~~~~~ 539 (807)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.++.+|..+.... ||||||||+|.+....+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 699999999999999999999999999999999998888889999999999999887 9999999999998775111
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhcCCCCC-CceEEEeccCccCCCCcccCCCccccEEEeccC
Q 003619 540 TTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (807)
Q Consensus 540 ~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~-~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~l 602 (807)
........++.|+..++..... .+++||++||.++.++++++| +||+..|++++
T Consensus 78 --------~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 --------SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp --------SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred --------cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2334456678888888877654 569999999999999999998 89999999874
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.6e-19 Score=191.26 Aligned_cols=233 Identities=26% Similarity=0.410 Sum_probs=172.8
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~v 499 (807)
+.-.|++|+-....+.+++++...-.+.... -.+-++||+|||||||||++|+-||+..|...-.+.+.+..- +-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h----~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKH----QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcccccc----cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 4445999999999999998887765554432 245679999999999999999999999999988888776432 22
Q ss_pred hhhhHHHHHHHHHHHhCCCc-EEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 003619 500 GVGSARIRDLFKRAKVNKPS-VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (807)
Q Consensus 500 G~~~~~ir~lF~~A~~~~Ps-ILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAAT 578 (807)
.++...+..+|+-+++.... +|||||.|++...|.... .++.....+|.||-.-- +....++++.+|
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty----------mSEaqRsaLNAlLfRTG--dqSrdivLvlAt 492 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY----------MSEAQRSALNALLFRTG--DQSRDIVLVLAT 492 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh----------hcHHHHHHHHHHHHHhc--ccccceEEEecc
Confidence 34556789999999776544 889999999987765321 44556677888875422 334568888999
Q ss_pred CccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-----------------------CccC----HHHHH
Q 003619 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----------------------DSVD----LSSYA 631 (807)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-----------------------~dvd----L~~LA 631 (807)
|+|..+|.++-. |+|..++|++|..++|..+|..|+.+.-.. ...+ +.+.|
T Consensus 493 NrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 493 NRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred CCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 999999999999 999999999999999999999888653211 0111 56678
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 632 KNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 632 ~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
+.|.||||++|..|+--....+.-+....++...+++.++
T Consensus 571 kkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ 610 (630)
T KOG0742|consen 571 KKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVD 610 (630)
T ss_pred HhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 9999999999999986544433333333344444444443
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8e-19 Score=194.80 Aligned_cols=210 Identities=26% Similarity=0.343 Sum_probs=157.7
Q ss_pred cccCcccccHHHHHHHH-HHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 003619 422 VKFSDVAGIDEAVEELQ-ELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (807)
Q Consensus 422 v~F~dVvG~devkeeL~-eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG 500 (807)
-+|+.|+=-.+.|++|. ++.++++..+-|++.|..-.+|.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 78999987778887765 5666789999999999999999999999999999999999999999999888765322
Q ss_pred hhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC--ceEEEecc
Q 003619 501 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK--GVIFLAAT 578 (807)
Q Consensus 501 ~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~--~VIVIAAT 578 (807)
... ++.++..+ ..-+||+|.|||.-..-+........+ . ......-++..||..+||+-+.. --|||.||
T Consensus 274 -n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~-~---~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 -DSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKEN-F---EGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred -cHH-HHHHHHhC--CCCcEEEEeeccccccccccccccccc-c---cCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 222 66666543 345799999999875433221110000 0 00123357889999999996654 57888999
Q ss_pred CccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCC--CcHHHHHHH
Q 003619 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG--WTGARLAQL 645 (807)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~G--fSgaDL~~L 645 (807)
|..+.|||||+||||+|.+|++..-+.++-+.+++.++..-. +..-+.+|.+...+ .||||+...
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999999986432 12224444444333 589998764
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.6e-18 Score=183.18 Aligned_cols=238 Identities=21% Similarity=0.224 Sum_probs=172.0
Q ss_pred cCcccccHHHHHHHHHHHHH-hcChhhhhh-cCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCc
Q 003619 424 FSDVAGIDEAVEELQELVRY-LKNPELFDK-MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGS 492 (807)
Q Consensus 424 F~dVvG~devkeeL~eiV~~-L~~pe~~~~-lGl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~s 492 (807)
|+.++--...|++|..++.. +.-.+.-.. --+...+-+||+||||||||+|+||+|+.+ ...++.+|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 44555556678888766554 322221111 113345679999999999999999999977 3467899999
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC---CC--cEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVN---KP--SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~---~P--sILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~ 567 (807)
.+.++|.+++.+.+..+|++.... .. -.++|||+++++..|.....+. .....-+.+|.+|+++|.+.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~-------EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN-------EPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC-------CCchHHHHHHHHHHHHHHhc
Confidence 999999999999999999887542 22 2567999999998774432221 22334578999999999999
Q ss_pred CCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCC---C--C--------CccC-----HHH
Q 003619 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVK---M--S--------DSVD-----LSS 629 (807)
Q Consensus 568 ~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~---l--~--------~dvd-----L~~ 629 (807)
...+|++++|+|-.+.||-|+.. |-|-+.++++|+...+.+|++..+..+- + . .... ...
T Consensus 294 ~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~ 371 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNI 371 (423)
T ss_pred cCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHH
Confidence 99999999999999999999999 9999999999999999999998775421 0 0 1111 122
Q ss_pred HHhh-CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003619 630 YAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 630 LA~~-T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~r 672 (807)
+... +.|.||+.|+.+=-.|...- -....|+.+++..|+-.
T Consensus 372 ~~~~~~~gLSGRtlrkLP~Laha~y--~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 372 LIELSTVGLSGRTLRKLPLLAHAEY--FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHhhcCCccchHhhhhHHHHHhc--cCCCccChHHHHHHHHH
Confidence 2222 57999999998765554332 23346888887766543
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=2.1e-17 Score=180.61 Aligned_cols=217 Identities=24% Similarity=0.296 Sum_probs=160.8
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~v 499 (807)
.+.+|++++|+++.++.+..++.....+ ..++.++||+||||||||++|+++|++++..+...+++.+..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4568999999999999999887654322 135668999999999999999999999999988777653321
Q ss_pred hhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh------cC-CC-----
Q 003619 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DG-FD----- 567 (807)
Q Consensus 500 G~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL------dg-~~----- 567 (807)
...+..++.. ...++||||||||.+..... ..+..++... +. ..
T Consensus 90 ---~~~l~~~l~~--l~~~~vl~IDEi~~l~~~~~-------------------e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 90 ---PGDLAAILTN--LEEGDVLFIDEIHRLSPVVE-------------------EILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred ---hHHHHHHHHh--cccCCEEEEecHhhcchHHH-------------------HHHHHHHHhcceeeeeccCcccccee
Confidence 1223333333 24578999999999854321 1122222211 10 00
Q ss_pred -CCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHHHHhhCCCCcHHHHHHH
Q 003619 568 -TGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 568 -~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~LA~~T~GfSgaDL~~L 645 (807)
...++.+|++||++..++++|++ ||...+.+++|+.+++.+|++..+...++.-+ ..+..++..+.| +++.+.++
T Consensus 146 ~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~ 222 (328)
T PRK00080 146 LDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRL 222 (328)
T ss_pred ecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHH
Confidence 11247889999999999999988 99999999999999999999988876655422 237788888887 67999999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003619 646 VQEAALVAVRKGHESILSSDMDDAVDRL 673 (807)
Q Consensus 646 v~eAal~A~rr~~~~It~edl~~Al~rv 673 (807)
++.+...|..++...|+.+++..+++..
T Consensus 223 l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 223 LRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9998888877667789999999999765
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.76 E-value=2e-17 Score=177.93 Aligned_cols=214 Identities=23% Similarity=0.299 Sum_probs=154.6
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVG 502 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~ 502 (807)
+|+|++|++++++.|..++...... ...+.+++|+||||||||+||+++|++++.++...+++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999998887643221 134567999999999999999999999998887766543211
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-------CC------CCC
Q 003619 503 SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-------GF------DTG 569 (807)
Q Consensus 503 ~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd-------g~------~~~ 569 (807)
...+...+.. ...+.+|||||+|.+....++ .+..++.... +. ...
T Consensus 69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~~e-------------------~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 127 (305)
T TIGR00635 69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAVEE-------------------LLYPAMEDFRLDIVIGKGPSARSVRLDL 127 (305)
T ss_pred chhHHHHHHh--cccCCEEEEehHhhhCHHHHH-------------------HhhHHHhhhheeeeeccCccccceeecC
Confidence 1112222222 235679999999998654211 1111111110 00 011
Q ss_pred CceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHHHHHH
Q 003619 570 KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 570 ~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~Lv~e 648 (807)
.++++|++||++..+++++++ ||...+.+++|+.+++.++++..+......- +..+..+++.+.| +++.+.++++.
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 347889999999999999998 9988999999999999999998887554432 2236788888888 56888899998
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHH
Q 003619 649 AALVAVRKGHESILSSDMDDAVDRL 673 (807)
Q Consensus 649 Aal~A~rr~~~~It~edl~~Al~rv 673 (807)
+...|...+...|+.+++..++...
T Consensus 205 ~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 205 VRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 8877766666779999999999873
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=1.7e-17 Score=171.66 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=130.4
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~v 499 (807)
.+.+|+|++|+++++..++-++...+... ....++|||||||+|||+||+.+|++++.+|...+++.+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 45699999999999999987777643221 23348999999999999999999999999999998865321
Q ss_pred hhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--------CC---
Q 003619 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DT--- 568 (807)
Q Consensus 500 G~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~--------~~--- 568 (807)
...+..++... ....||||||||.+.... +. .|+..|+.+ ..
T Consensus 89 ---~~dl~~il~~l--~~~~ILFIDEIHRlnk~~-------------------qe---~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 89 ---AGDLAAILTNL--KEGDILFIDEIHRLNKAQ-------------------QE---ILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HHH-------------------HH---HHHHHHHCSEEEEEBSSSSS-B
T ss_pred ---HHHHHHHHHhc--CCCcEEEEechhhccHHH-------------------HH---HHHHHhccCeEEEEeccccccc
Confidence 12233333333 345699999999986542 22 233334332 11
Q ss_pred -----CCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHH
Q 003619 569 -----GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARL 642 (807)
Q Consensus 569 -----~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL 642 (807)
-.++.+|+||++...|.+.|+. ||....++..++.++..+|++......++.-+.+ ..+||+++.| +++-.
T Consensus 142 ~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiA 218 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIA 218 (233)
T ss_dssp EEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHH
T ss_pred eeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHH
Confidence 1247899999999999999999 9999999999999999999998887776663333 7789999988 89988
Q ss_pred HHHHHHHHHHH
Q 003619 643 AQLVQEAALVA 653 (807)
Q Consensus 643 ~~Lv~eAal~A 653 (807)
.++++++.-.|
T Consensus 219 nrll~rvrD~a 229 (233)
T PF05496_consen 219 NRLLRRVRDFA 229 (233)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHHHHHHH
Confidence 88888765433
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.8e-17 Score=184.88 Aligned_cols=265 Identities=20% Similarity=0.206 Sum_probs=191.3
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCchhHHHHhh
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVG 500 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~sel~~~~vG 500 (807)
.|++-..+.|++..+ ....| +-.+.+|||.||+|+|||.|+++++.+. .+++..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 456666666665543 22223 3445689999999999999999999977 456778899998777677
Q ss_pred hhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc
Q 003619 501 VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR 580 (807)
Q Consensus 501 ~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~ 580 (807)
...+.++.+|..+.+++|+||+||++|.|.+..+. .+..+.. ........++++..... ..+..+.+||+.+.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~--e~~q~~~---~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe 550 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN--ENGQDGV---VSERLAAFLNQVIKIYL--KRNRKIAVIATGQE 550 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc--cCCcchH---HHHHHHHHHHHHHHHHH--ccCcEEEEEEechh
Confidence 77778899999999999999999999999873221 1111111 11222334444444332 33455799999999
Q ss_pred cCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHh---
Q 003619 581 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK--- 656 (807)
Q Consensus 581 pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr--- 656 (807)
...++|.|.+|++|+.++.++.|+..+|.+||+..+++.... ...|++-++..|+||...|+..++.+|...|..+
T Consensus 551 ~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris 630 (952)
T KOG0735|consen 551 LQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS 630 (952)
T ss_pred hhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998876532 2234666999999999999999999999888732
Q ss_pred -CCCccCHHHHHHHHHHHhcCCccc-CcccccCcch--hHHHHHHHHHHHHHHh
Q 003619 657 -GHESILSSDMDDAVDRLTVGPKRR-GIELGNQGQS--RRAATEVGVAMISHLL 706 (807)
Q Consensus 657 -~~~~It~edl~~Al~rv~~g~~~~-~~~l~~~ek~--~iA~hEaGhAvva~lL 706 (807)
+...++.+++.++++...+-.-+. ...-+...++ +-.++|+-.++-..+.
T Consensus 631 ~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~ 684 (952)
T KOG0735|consen 631 NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIE 684 (952)
T ss_pred cCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHh
Confidence 223789999999999876532221 1111111233 3468888877766543
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-17 Score=190.61 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=172.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhh
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 533 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r 533 (807)
+......+||+|+||||||++++++|.++|.+++.++|.++...-.+..+.++...|.+|+...|+||||-++|.++..+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 34445579999999999999999999999999999999999998888899999999999999999999999999998544
Q ss_pred cCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-CCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHH
Q 003619 534 QGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEIL 612 (807)
Q Consensus 534 ~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eIL 612 (807)
.++ ........++.++. .|.+ ....+++||++|+..+.+++.+++ .|-..|.++.|+.++|.+||
T Consensus 507 dgg-----------ed~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 507 DGG-----------EDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred CCc-----------hhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHH
Confidence 321 22334455666665 3333 355679999999999999999998 77789999999999999999
Q ss_pred HHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHH---HhCC-----------------CccCHHHHHHHHHH
Q 003619 613 KIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAV---RKGH-----------------ESILSSDMDDAVDR 672 (807)
Q Consensus 613 k~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~---rr~~-----------------~~It~edl~~Al~r 672 (807)
+.++....+..++.+..++.+|.||+.+|+..++..+-..+. .+.. ..++++|+..|+.+
T Consensus 573 q~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 573 QWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred HHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 999999999999999999999999999999998876622221 1111 45899999999997
Q ss_pred Hhc
Q 003619 673 LTV 675 (807)
Q Consensus 673 v~~ 675 (807)
...
T Consensus 653 ~~~ 655 (953)
T KOG0736|consen 653 LQK 655 (953)
T ss_pred HHH
Confidence 643
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-16 Score=178.81 Aligned_cols=219 Identities=44% Similarity=0.726 Sum_probs=194.7
Q ss_pred hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEe
Q 003619 444 LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFI 523 (807)
Q Consensus 444 L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfI 523 (807)
+..++.++.++..++++++++||||||||++++++|.+ +..+..+++++....+.|....+.+..|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888899999999999999999999999999999 66668889999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCC
Q 003619 524 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAP 603 (807)
Q Consensus 524 DEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lP 603 (807)
||+|.+.+.+... ........+.+++..++++.... +++++.||++..+|+++++|+||++.+.+..|
T Consensus 83 d~~~~~~~~~~~~-----------~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 83 DEIDALAPKRSSD-----------QGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred chhhhcccCcccc-----------ccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCC
Confidence 9999999887541 12234456778888888888444 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHhc
Q 003619 604 NAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG------HESILSSDMDDAVDRLTV 675 (807)
Q Consensus 604 d~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~------~~~It~edl~~Al~rv~~ 675 (807)
+...+.+|+..+........+.++..++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 151 ~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred CHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 999999999999988888888899999999999999999999999999988874 345889999999999865
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.69 E-value=5.2e-16 Score=180.23 Aligned_cols=262 Identities=23% Similarity=0.310 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccc-cccccc---ccccccc----cccccCCCCCcccCcccccHHHHHHHHHHHHHhc
Q 003619 374 ITLVILTMVLLIRFTLSRRPKNFRK-WDLWQG---IDFSRSK----AEARVDGSTGVKFSDVAGIDEAVEELQELVRYLK 445 (807)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~----~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~ 445 (807)
+++++..++.++.|.+.+.++.... .+.... ....+.. .+...+...+.+|++++|+++.++.++..+ .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al---~ 82 (531)
T TIGR02902 6 VQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAAL---C 82 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHH---h
Confidence 4555666666766666665443221 111110 0000000 122345567789999999999988887542 1
Q ss_pred ChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeCchh-------HHHHhhhhhH----
Q 003619 446 NPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEF-------VEVLVGVGSA---- 504 (807)
Q Consensus 446 ~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~sel-------~~~~vG~~~~---- 504 (807)
...+.++||+||||||||++|+++++.+ +.+|+.++|... .+...+....
T Consensus 83 ---------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~ 153 (531)
T TIGR02902 83 ---------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQ 153 (531)
T ss_pred ---------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhc
Confidence 1235689999999999999999998642 468999998631 1111111000
Q ss_pred ------------HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh----c----
Q 003619 505 ------------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL----D---- 564 (807)
Q Consensus 505 ------------~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL----d---- 564 (807)
.....+. .....+|||||||.+.... +..+..++.+- +
T Consensus 154 ~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~~-------------------q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 154 GAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPVQ-------------------MNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred cccccccCCcccccCchhh---ccCCcEEEEechhhCCHHH-------------------HHHHHHHHHhCeeeeccccc
Confidence 0011122 2345699999999986542 12222222220 0
Q ss_pred -CC--------------CCCCce-EEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCH
Q 003619 565 -GF--------------DTGKGV-IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDL 627 (807)
Q Consensus 565 -g~--------------~~~~~V-IVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL 627 (807)
+. ..+.++ ++++|||.++.++|++++ |+ ..+.+++++.+++.+|++..+++..+.-+ ..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al 288 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHAL 288 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 00 011233 445566779999999998 76 47889999999999999999987665422 225
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
+.++..+. +++++.++++.|+..|..+++..|+.+|+.+++..-.
T Consensus 289 ~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 289 ELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 66666553 7999999999999999888888999999999987443
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=4.8e-16 Score=164.12 Aligned_cols=216 Identities=25% Similarity=0.331 Sum_probs=169.5
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHh
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~v 499 (807)
.+.+|+|.+|++++|+.|+-++...+..+ ....++||+||||.|||+||+.+|+++++.+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 46789999999999999998887644322 34458999999999999999999999999999888775532
Q ss_pred hhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--------CC---
Q 003619 500 GVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--------DT--- 568 (807)
Q Consensus 500 G~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~--------~~--- 568 (807)
...+-.++.. ....+||||||||++.+.-. ..+. -.|+.+ ..
T Consensus 91 ---~gDlaaiLt~--Le~~DVLFIDEIHrl~~~vE-------------------E~LY---paMEDf~lDI~IG~gp~Ar 143 (332)
T COG2255 91 ---PGDLAAILTN--LEEGDVLFIDEIHRLSPAVE-------------------EVLY---PAMEDFRLDIIIGKGPAAR 143 (332)
T ss_pred ---hhhHHHHHhc--CCcCCeEEEehhhhcChhHH-------------------HHhh---hhhhheeEEEEEccCCccc
Confidence 1223333333 23457999999999875432 2222 222222 11
Q ss_pred -----CCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHH
Q 003619 569 -----GKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARL 642 (807)
Q Consensus 569 -----~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL 642 (807)
-..+.+|+||.+...|...|+. ||....++..++.++..+|++.....+.+.-+.+ ..++|+++.| |++-.
T Consensus 144 sv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIA 220 (332)
T COG2255 144 SIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIA 220 (332)
T ss_pred eEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHH
Confidence 1347899999999999999999 9999999999999999999999888777664333 7789999988 89999
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 643 ~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
..++++..-.|.-++...|+.+-...|+.....
T Consensus 221 nRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 221 NRLLRRVRDFAQVKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCc
Confidence 999999999999889999999999999987754
No 54
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=2.7e-16 Score=188.93 Aligned_cols=222 Identities=19% Similarity=0.289 Sum_probs=160.5
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeC
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~ 491 (807)
-++++++|.++..+.+.+++.. +...+++|+||||||||++++++|+++ +..++.+++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 4678999999988776554421 234478999999999999999999987 677899998
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC
Q 003619 492 SEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (807)
Q Consensus 492 sel~--~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~ 569 (807)
+.+. ..+.|+.+.+++.+|+.+....++||||||+|.+.+...... + ..... +.|...+. +
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~-~---------~~~~~---~~L~~~l~----~ 309 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG-G---------SMDAS---NLLKPALS----S 309 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC-c---------cHHHH---HHHHHHHh----C
Confidence 8887 367888999999999999877899999999999986532111 0 00111 22222222 4
Q ss_pred CceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC----CCC-CccCHHHHHhhCCCCc-
Q 003619 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV----KMS-DSVDLSSYAKNLPGWT- 638 (807)
Q Consensus 570 ~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~----~l~-~dvdL~~LA~~T~GfS- 638 (807)
+.+.+|++||..+ ..|+++.| ||. .|.++.|+.+++.+||+...... .+. .+..+..++..+..|-
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 6789999999743 47999999 997 79999999999999999766542 111 2223556666555443
Q ss_pred ----HHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhc
Q 003619 639 ----GARLAQLVQEAALVAVRK----GHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 639 ----gaDL~~Lv~eAal~A~rr----~~~~It~edl~~Al~rv~~ 675 (807)
|.-...++++|+.....+ ....|+.+|+..++.+...
T Consensus 387 ~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 387 DRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred cccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 445567788877654322 2346999999999998764
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=3.8e-16 Score=188.69 Aligned_cols=164 Identities=30% Similarity=0.406 Sum_probs=122.2
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-------- 496 (807)
+++.|++++++++.+++...... +...+..+||+||||||||++|+++|+.++.+++.++++.+.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 35889999999999877642211 1122347999999999999999999999999999998765422
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC-----C----
Q 003619 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-----F---- 566 (807)
Q Consensus 497 -~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg-----~---- 566 (807)
.|.|.....+...|..+....| ||||||||.+....++ + ..+.|+..+|. +
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~---------------~~~aLl~~ld~~~~~~f~d~~ 454 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D---------------PASALLEVLDPEQNNAFSDHY 454 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C---------------HHHHHHHhcCHHhcCcccccc
Confidence 3556666677778888776666 8999999999754221 1 01233333331 1
Q ss_pred ----CCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHh
Q 003619 567 ----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHA 616 (807)
Q Consensus 567 ----~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L 616 (807)
...+++++|+|||..+.++++|++ ||+ .|.++.|+.+++.+|++.++
T Consensus 455 ~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 455 LDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 112578999999999999999999 995 78999999999999998876
No 56
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.66 E-value=3.3e-15 Score=167.86 Aligned_cols=240 Identities=21% Similarity=0.246 Sum_probs=157.9
Q ss_pred CCcccCc-ccccHH--HHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeC
Q 003619 420 TGVKFSD-VAGIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (807)
Q Consensus 420 ~~v~F~d-VvG~de--vkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~ 491 (807)
+..+|++ ++|.+. +...++++ ...|. ....+++|+||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~---~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAV---AENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHH---HhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 5678999 556443 22333332 22221 234579999999999999999999876 578999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc
Q 003619 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (807)
Q Consensus 492 sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~ 571 (807)
.++...+...........|.... ..+++|+|||+|.+.++.. ...+...+++.+.. ...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~~~~-------~~~ 233 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGKER-------------TQEEFFHTFNALHE-------NGK 233 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHH-------CCC
Confidence 88876654332211111222211 2467999999999865421 11222233333322 223
Q ss_pred eEEEeccCccCC---CCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHH
Q 003619 572 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 572 VIVIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~L 645 (807)
.+||+++..|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+...++. ++..++.+|.+..+ +.++|+.+
T Consensus 234 ~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~ 310 (405)
T TIGR00362 234 QIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGA 310 (405)
T ss_pred CEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Confidence 456666655654 5678887 775 479999999999999999998766554 23337788888766 89999999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcccCcccccCcchhHHHHHHHHHHHHHH
Q 003619 646 VQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHL 705 (807)
Q Consensus 646 v~eAal~A~rr~~~~It~edl~~Al~rv~~g~~~~~~~l~~~ek~~iA~hEaGhAvva~l 705 (807)
++.....|...+ ..||.+.+.+++....... +..+..+++-++|..+.
T Consensus 311 l~~l~~~a~~~~-~~it~~~~~~~L~~~~~~~-----------~~~it~~~I~~~Va~~~ 358 (405)
T TIGR00362 311 LNRLLAYASLTG-KPITLELAKEALKDLLRAK-----------KKEITIENIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHhcccc-----------CCCCCHHHHHHHHHHHc
Confidence 999888876544 6699999999987653221 12355677777776544
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=1.1e-15 Score=183.06 Aligned_cols=223 Identities=21% Similarity=0.302 Sum_probs=159.0
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeCc
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGS 492 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~s 492 (807)
+++.++|.++..+++.+++.. +...++||+||||||||++|+++|... +..++.++..
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 467899999988777766543 123478999999999999999999864 3445555555
Q ss_pred hhH--HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 493 EFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 493 el~--~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
.+. ..+.|..+.+++.++..+....++||||||||.+.+.+.... .......++..++ .+.
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~----------g~~d~~nlLkp~L-------~~g 314 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----------GQVDAANLIKPLL-------SSG 314 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC----------cHHHHHHHHHHHH-------hCC
Confidence 554 346788888999999998888899999999999986542110 1111222333333 246
Q ss_pred ceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCH-----HHHHhhC-----C
Q 003619 571 GVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDL-----SSYAKNL-----P 635 (807)
Q Consensus 571 ~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL-----~~LA~~T-----~ 635 (807)
.+.+|++||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++++ ...+..+ .
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~ 391 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIND 391 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccC
Confidence 789999999865 47999999 996 7999999999999999987766554444443 2222222 2
Q ss_pred CCcHHHHHHHHHHHHHHHHH----hCCCccCHHHHHHHHHHHhcCC
Q 003619 636 GWTGARLAQLVQEAALVAVR----KGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 636 GfSgaDL~~Lv~eAal~A~r----r~~~~It~edl~~Al~rv~~g~ 677 (807)
.+-|.....++.+|+..... ..+..|+.+|+.+.+.+...-+
T Consensus 392 r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip 437 (758)
T PRK11034 392 RHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIP 437 (758)
T ss_pred ccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCC
Confidence 34566888899999865431 2344689999999998876543
No 58
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=3e-15 Score=170.56 Aligned_cols=221 Identities=23% Similarity=0.274 Sum_probs=150.8
Q ss_pred CCCcccCccc-ccHH--HHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe
Q 003619 419 STGVKFSDVA-GIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 490 (807)
Q Consensus 419 ~~~v~F~dVv-G~de--vkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is 490 (807)
.+..+|++.+ |... +...++++. .+|. ....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~---~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVA---ENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHH---hCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899954 5332 334443332 2221 223469999999999999999999987 56689999
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 491 ~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
+.++...+...........|... ...+++|+|||+|.+.+++. ..++...+++.+.. ..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~~-------------~~~~l~~~~n~l~~-------~~ 244 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKER-------------TQEEFFHTFNALHE-------AG 244 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCHH-------------HHHHHHHHHHHHHH-------CC
Confidence 99887766544322222233322 23577999999999865421 12223333344332 22
Q ss_pred ceEEEeccCccCC---CCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHH
Q 003619 571 GVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 571 ~VIVIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~ 644 (807)
..+||+++..|.. +++++.+ ||. ..+.+.+|+.++|.+||+..+...++. ++..++.+|....| +.++|..
T Consensus 245 ~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~ 321 (450)
T PRK00149 245 KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEG 321 (450)
T ss_pred CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHH
Confidence 3466666666655 6788887 885 589999999999999999998765443 22337888888876 8999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
+++.....+...+ ..|+.+.+.+++....
T Consensus 322 ~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 322 ALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 9999888876654 5699999999998764
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.65 E-value=1.2e-14 Score=159.97 Aligned_cols=222 Identities=24% Similarity=0.277 Sum_probs=150.9
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEeCc
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGS 492 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---------~pfi~Is~s 492 (807)
...++++|.++.+++|...+..... ...+.+++|+||||||||++++++++++. .++++++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3446899999999999888765321 13345799999999999999999997652 578888885
Q ss_pred hhHH----------HHh--hh--------hhHHHHHHHHHHH-hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHH
Q 003619 493 EFVE----------VLV--GV--------GSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (807)
Q Consensus 493 el~~----------~~v--G~--------~~~~ir~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e 551 (807)
...+ .+. +. ....+..++.... ...+.||+|||+|.+....
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------------------ 145 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD------------------ 145 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC------------------
Confidence 4321 111 11 0112334444433 3457799999999986221
Q ss_pred HHHHHHHHHHhhcC-CCCCCceEEEeccCccC---CCCcccCCCcccc-EEEeccCCCHHHHHHHHHHHhhcCC----CC
Q 003619 552 RETTLNQLLIELDG-FDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK----MS 622 (807)
Q Consensus 552 ~~~tLn~LL~eLdg-~~~~~~VIVIAATN~pd---~LDpALlRpGRFd-r~I~I~lPd~eeR~eILk~~L~~~~----l~ 622 (807)
...+..++...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.++.... +.
T Consensus 146 -~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~ 222 (365)
T TIGR02928 146 -DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD 222 (365)
T ss_pred -cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 1234445443211 12235788899999876 47778877 664 6799999999999999999886211 11
Q ss_pred Ccc-C-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003619 623 DSV-D-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (807)
Q Consensus 623 ~dv-d-L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv 673 (807)
+++ + +..++..+.| ..+.+.++|+.|...|..++...|+.+|+..|++..
T Consensus 223 ~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 223 DGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred hhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 111 1 2334444556 567778899999999988888899999999998876
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.3e-15 Score=167.15 Aligned_cols=205 Identities=26% Similarity=0.438 Sum_probs=138.9
Q ss_pred CCcccCcccccHHHHHH---HHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 420 TGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 420 ~~v~F~dVvG~devkee---L~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
.+.+++|++|+++...+ |++.++ . ....+++||||||||||+||+.||+..+.+|..+|+..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~---~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE---A---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh---c---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 45789999999987633 333333 2 22347999999999999999999999999999998742
Q ss_pred HHhhhhhHHHHHHHHHHHhCC----CcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 497 VLVGVGSARIRDLFKRAKVNK----PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 497 ~~vG~~~~~ir~lF~~A~~~~----PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
.+.+.++.+++.|+... .-||||||||.+....| ..||-.++ ++.+
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ----------------------D~lLp~vE----~G~i 133 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ----------------------DALLPHVE----NGTI 133 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh----------------------hhhhhhhc----CCeE
Confidence 34567899999985533 35999999999875532 23333333 4667
Q ss_pred EEEeccC-ccC-CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhc--CCCC------CccCHHHHHhhCCCCcHHHH
Q 003619 573 IFLAATN-RRD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK--VKMS------DSVDLSSYAKNLPGWTGARL 642 (807)
Q Consensus 573 IVIAATN-~pd-~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~--~~l~------~dvdL~~LA~~T~GfSgaDL 642 (807)
++|+||. .|. .+.++|++ | .+++.+.+.+.++..++++..+.. .++. ++.-++.++..+.| .++-.
T Consensus 134 ilIGATTENPsF~ln~ALlS--R-~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~a 209 (436)
T COG2256 134 ILIGATTENPSFELNPALLS--R-ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRA 209 (436)
T ss_pred EEEeccCCCCCeeecHHHhh--h-hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHH
Confidence 8887763 343 69999998 6 468889999999999999884432 2232 12225667777776 33333
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 643 ~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
-|++..+...+. .+ ..++.+++.+.+.+...
T Consensus 210 LN~LE~~~~~~~-~~-~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 210 LNLLELAALSAE-PD-EVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHHHhcC-CC-cccCHHHHHHHHhhhhh
Confidence 344444443332 12 24457888887776544
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=8.4e-15 Score=168.36 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=145.1
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
.++..+.+|+||+|++++++.|++++..... ..+++++||+||||||||++|+++|++++.+++.+++++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 4556678899999999999999998875432 13467899999999999999999999999999999988753
Q ss_pred HHHhhhhhHHHHHHHHHHHh------CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC
Q 003619 496 EVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~------~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~ 569 (807)
.. ..++.+...+.. ..+.+|+|||+|.+..... ...++.|+..++.
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d------------------~~~~~aL~~~l~~---- 128 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED------------------RGGARAILELIKK---- 128 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc------------------hhHHHHHHHHHHc----
Confidence 21 122222222211 2467999999999864211 0122334444431
Q ss_pred CceEEEeccCccCCCCc-ccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHH
Q 003619 570 KGVIFLAATNRRDLLDP-ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQ 647 (807)
Q Consensus 570 ~~VIVIAATN~pd~LDp-ALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~ 647 (807)
.+..+|+++|.+..+++ .+++ ....|.|++|+.++...+++..+...++. ++..+..|+..+.| |++.+++
T Consensus 129 ~~~~iIli~n~~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 129 AKQPIILTANDPYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred CCCCEEEeccCccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 22345667888888777 5544 45789999999999999999888765544 22337788887755 7888877
Q ss_pred HHHHHHHHhCCCccCHHHHHHH
Q 003619 648 EAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 648 eAal~A~rr~~~~It~edl~~A 669 (807)
.....+ .+...|+.+++...
T Consensus 202 ~Lq~~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 202 DLQAIA--EGYGKLTLEDVKTL 221 (482)
T ss_pred HHHHHh--cCCCCCcHHHHHHh
Confidence 766544 34456777776544
No 62
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=1.1e-14 Score=165.74 Aligned_cols=222 Identities=17% Similarity=0.224 Sum_probs=147.9
Q ss_pred CCCcccCccc-ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeCc
Q 003619 419 STGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS 492 (807)
Q Consensus 419 ~~~v~F~dVv-G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~s 492 (807)
.+..+|++.+ |-... ...........+|. ...+++||||||+|||+|++++++++ +..++++++.
T Consensus 99 ~~~~tFdnFv~g~~n~-~a~~~~~~~~~~~~--------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 99 NPDYTFENFVVGPGNS-FAYHAALEVAKNPG--------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCcccccccCCchH-HHHHHHHHHHhCcC--------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 4668999977 54322 22222222232332 13469999999999999999999975 4678999998
Q ss_pred hhHHHHhhhhh-HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc
Q 003619 493 EFVEVLVGVGS-ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (807)
Q Consensus 493 el~~~~vG~~~-~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~ 571 (807)
+|...+..... ..+. -|.......+++|+|||++.+.++.. ...+...+++.+.. ...
T Consensus 170 ~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~~~-------------~q~elf~~~n~l~~-------~~k 228 (440)
T PRK14088 170 KFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGKTG-------------VQTELFHTFNELHD-------SGK 228 (440)
T ss_pred HHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCcHH-------------HHHHHHHHHHHHHH-------cCC
Confidence 88776544321 1222 23333334688999999998864321 12223333444332 223
Q ss_pred eEEEeccCccCC---CCcccCCCccc--cEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHH
Q 003619 572 VIFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 572 VIVIAATN~pd~---LDpALlRpGRF--dr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~L 645 (807)
.+||++.+.|.. +++.+.+ || ...+.+.+||.+.|.+|++..+...++. ++..++.||....| +.++|+.+
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~ 305 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGA 305 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHH
Confidence 466666666665 5567777 66 4588899999999999999888754433 22237788888876 89999999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 646 VQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 646 v~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
++.....+...+ ..||.+.+.+++....
T Consensus 306 l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 306 IIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 998877776554 5699999999998764
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.5e-14 Score=164.49 Aligned_cols=205 Identities=21% Similarity=0.269 Sum_probs=147.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
.+..+.+|+||+|++.++..|+..+.. .+.+..+||+||+|||||++|+.+|+.++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 445678999999999999988877652 1234568999999999999999999988652
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.+++. ...+...++++.+.+. .....|+||||+|.+..
T Consensus 79 ~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~----------------- 135 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD----------------- 135 (484)
T ss_pred cHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------------
Confidence 2222221 1112334555555443 23456999999999753
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL 627 (807)
..++.||..++. .+.++++|.+|+.++.|.+++++ |+ ..+.|..++.++..+.++..+...++. .+..+
T Consensus 136 -----~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL 205 (484)
T PRK14956 136 -----QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGL 205 (484)
T ss_pred -----HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 235677777764 45678888899999999999998 75 578899999988888898888765544 23347
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
..|++...| +.|+.-+++..+...+ ...|+.+++.+.+
T Consensus 206 ~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 206 FWIAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 788888877 7888888888776432 2358888876654
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.9e-14 Score=164.83 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=143.3
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------- 484 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------- 484 (807)
..++.+|+|++|++++++.|+..+.. . +.+.++||+||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~---~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK---N--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34567899999999998888766542 1 34567999999999999999999998754
Q ss_pred -----------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 485 -----------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 485 -----------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.++.++++. ..+...++.+.+.+.. ....||||||+|.+...
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~----------------- 132 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE----------------- 132 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-----------------
Confidence 344454431 1122345555554432 23459999999997532
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~ 628 (807)
.++.|+..++. .+..+++|++|+.+..+++++++ |+ ..+.+.+++.++...+++..+...+.. .+..+.
T Consensus 133 -----a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~ 202 (472)
T PRK14962 133 -----AFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALS 202 (472)
T ss_pred -----HHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 23556666663 33457777777778899999998 76 589999999999999999888654433 223377
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~r 672 (807)
.|+..+.| +.+++.+.+..+...+ + ..|+.+++.+++..
T Consensus 203 ~Ia~~s~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 203 FIAKRASG-GLRDALTMLEQVWKFS---E-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcC
Confidence 78887766 6666666666654332 2 34999999988753
No 65
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=7.4e-14 Score=155.41 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=150.6
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeCchhH-
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFV- 495 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~sel~- 495 (807)
...+.++|.++..++|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3457789999998888887754211 1234579999999999999999999876 5778999986432
Q ss_pred ---------HHHhhh-------h-hHHHHHHHHHHH-hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHH
Q 003619 496 ---------EVLVGV-------G-SARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (807)
Q Consensus 496 ---------~~~vG~-------~-~~~ir~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn 557 (807)
..+.+. . ...+..+.+... ...+.||+|||+|.+..... ...+.
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~------------------~~~l~ 160 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG------------------NDVLY 160 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC------------------chHHH
Confidence 111110 1 111222222222 23567999999999872211 12345
Q ss_pred HHHHhhcCCCCCCceEEEeccCccC---CCCcccCCCcccc-EEEeccCCCHHHHHHHHHHHhhcCC---CCCccCHHHH
Q 003619 558 QLLIELDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVK---MSDSVDLSSY 630 (807)
Q Consensus 558 ~LL~eLdg~~~~~~VIVIAATN~pd---~LDpALlRpGRFd-r~I~I~lPd~eeR~eILk~~L~~~~---l~~dvdL~~L 630 (807)
.++..++... ..++.+|+++|..+ .+++.+.+ ||. ..|.+++++.++..+|++.++.... .-.+..++.+
T Consensus 161 ~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 161 SLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred HHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 5555554433 23677888888654 46777665 553 5789999999999999998875421 1122225666
Q ss_pred HhhCCC--CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 631 AKNLPG--WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 631 A~~T~G--fSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
++.+.+ ...+.+.++++.|+..|..++...|+.+|+..|+++..
T Consensus 238 ~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 238 ADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 666532 14566678899999999888889999999999998873
No 66
>PRK06893 DNA replication initiation factor; Validated
Probab=99.60 E-value=4.3e-14 Score=147.45 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=133.7
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhH
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~ 495 (807)
.+..+|++.+|.+... .+..+.+... . .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~~~~~------~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLRKNFI------D---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHHHHHHhh------c---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567899998665431 1111111111 1 112358999999999999999999875 4455666654321
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
.. ....++.. ...++|+|||++.+.+.. ..+..+..++..+. ..+..++++
T Consensus 80 ~~--------~~~~~~~~--~~~dlLilDDi~~~~~~~-----------------~~~~~l~~l~n~~~--~~~~~illi 130 (229)
T PRK06893 80 YF--------SPAVLENL--EQQDLVCLDDLQAVIGNE-----------------EWELAIFDLFNRIK--EQGKTLLLI 130 (229)
T ss_pred hh--------hHHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHH--HcCCcEEEE
Confidence 11 11222222 345799999999876432 11222333333332 123345566
Q ss_pred eccCccCCCC---cccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003619 576 AATNRRDLLD---PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQEAAL 651 (807)
Q Consensus 576 AATN~pd~LD---pALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~LA~~T~GfSgaDL~~Lv~eAal 651 (807)
+++..|..++ +.|.++.+++..+.++.|+.++|.+|++..+...++.-+ ..+..++++..| +.+.+.++++....
T Consensus 131 ts~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~ 209 (229)
T PRK06893 131 SADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDK 209 (229)
T ss_pred eCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 6766677654 788885556679999999999999999988765544422 237788888876 78899988887654
Q ss_pred HHHHhCCCccCHHHHHHHH
Q 003619 652 VAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 652 ~A~rr~~~~It~edl~~Al 670 (807)
.+. .....||...+.+++
T Consensus 210 ~~~-~~~~~it~~~v~~~L 227 (229)
T PRK06893 210 ASL-QAQRKLTIPFVKEIL 227 (229)
T ss_pred HHH-hcCCCCCHHHHHHHh
Confidence 343 333479998888775
No 67
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-14 Score=168.42 Aligned_cols=234 Identities=23% Similarity=0.332 Sum_probs=159.6
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-------- 496 (807)
.|-.|++++|+++.|++.-.+... -..+.-++|+||||+|||+|++.+|+.++..|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 467899999999998877522111 112246889999999999999999999999999998765443
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 497 -~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
.|+|....++-+.+.+|...+| +++|||||.++..-. +++...+....+.+.+..+..-+-+++ -.-++|++|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPaSALLEVLDPEQN~~F~DhYLev~--yDLS~VmFi 470 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPASALLEVLDPEQNNTFSDHYLEVP--YDLSKVMFI 470 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChHHHHHhhcCHhhcCchhhccccCc--cchhheEEE
Confidence 2888888888889999999999 899999999986533 334444444444444444433332222 123679999
Q ss_pred eccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh-----cCCCCC-cc-----CHHHHHhh-CC--CCc--H
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS-----KVKMSD-SV-----DLSSYAKN-LP--GWT--G 639 (807)
Q Consensus 576 AATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~-----~~~l~~-dv-----dL~~LA~~-T~--GfS--g 639 (807)
||+|..+.+|.+|+. |+ ..|.+.-++.+|..+|-+.|+= ..++.. .+ .+..+.+. |. |.- -
T Consensus 471 aTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~Le 547 (782)
T COG0466 471 ATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLE 547 (782)
T ss_pred eecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHH
Confidence 999999999999998 87 5899999999999999988862 233331 11 13333332 21 211 2
Q ss_pred HHHHHHHHHHHHHHHHhCCC---ccCHHHHHHHHHHH
Q 003619 640 ARLAQLVQEAALVAVRKGHE---SILSSDMDDAVDRL 673 (807)
Q Consensus 640 aDL~~Lv~eAal~A~rr~~~---~It~edl~~Al~rv 673 (807)
++|..+||.++..-...... .|+..++.+-+...
T Consensus 548 R~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 548 REIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 45666777766554443332 35566666555433
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.1e-14 Score=157.25 Aligned_cols=206 Identities=20% Similarity=0.288 Sum_probs=145.0
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
++..+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344568999999999999998877642 1345678999999999999999999987532
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.++++. ......++.+.+.+.. ....|++|||+|.+...
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---------------- 134 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---------------- 134 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH----------------
Confidence 22222110 0123345555555432 22459999999987421
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL 627 (807)
..+.||..++. .+.++.+|.+|+.++.+.+++++ |+ ..+++++|+.++..++++..++..+.. ++..+
T Consensus 135 ------a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al 203 (363)
T PRK14961 135 ------SFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYAL 203 (363)
T ss_pred ------HHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23556666664 33456666677778889888887 65 688999999999999999888765543 23346
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
..++..+.| +++++.+++..+... +...|+.+++.+++.
T Consensus 204 ~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 204 KLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 778887766 788888888877643 356799998887764
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=4.1e-14 Score=159.67 Aligned_cols=201 Identities=24% Similarity=0.409 Sum_probs=142.1
Q ss_pred CCcccCcccccHHHHHH---HHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 420 TGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 420 ~~v~F~dVvG~devkee---L~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
.+.+|+|++|++++... |.+++.. ....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45789999999998766 6555431 123479999999999999999999999999999987642
Q ss_pred HHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 497 VLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 497 ~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
+...++.+++.+. .....||||||+|.+.... .+.|+..++. ..+
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~----------------------q~~LL~~le~----~~i 121 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ----------------------QDALLPHVED----GTI 121 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH----------------------HHHHHHHhhc----CcE
Confidence 2234555555553 2356799999999875321 1234444442 346
Q ss_pred EEEeccC--ccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC--CC-C-CccCHHHHHhhCCCCcHHHHHHHH
Q 003619 573 IFLAATN--RRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV--KM-S-DSVDLSSYAKNLPGWTGARLAQLV 646 (807)
Q Consensus 573 IVIAATN--~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~--~l-~-~dvdL~~LA~~T~GfSgaDL~~Lv 646 (807)
++|++|+ ....+++++++ |+ ..+.+++++.++...+++..+... ++ . .+..+..+++.+.| +.+.+.+++
T Consensus 122 ilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~L 197 (413)
T PRK13342 122 TLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLL 197 (413)
T ss_pred EEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 6666553 34478999998 77 788999999999999998877542 11 1 12226677777755 677777777
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 647 QEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 647 ~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
..+... ...|+.+++.+++....
T Consensus 198 e~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 198 ELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred HHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 776643 45799999999987654
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.7e-14 Score=168.07 Aligned_cols=203 Identities=18% Similarity=0.270 Sum_probs=146.8
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------ 484 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------ 484 (807)
.+....+|+||+|++++++.|++.+..- +.++.+||+||+|||||++|+.+|+.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 3446789999999999999998876532 34557899999999999999999998865
Q ss_pred -----------------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchh
Q 003619 485 -----------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDH 543 (807)
Q Consensus 485 -----------------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~ 543 (807)
.++.++... ..+...++++.+.+.. ....|+||||+|.|..
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------ 138 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------ 138 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------
Confidence 122222210 1233456666665532 3356999999999753
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC
Q 003619 544 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 623 (807)
Q Consensus 544 ~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~ 623 (807)
...|.||..|+. ...++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+...++..
T Consensus 139 ----------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 139 ----------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred ----------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCC
Confidence 235778888874 45678888889999999999998 75 7889999999999999988876655543
Q ss_pred cc-CHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 624 SV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 624 dv-dL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
+. .+..|++.+.| +.++..+++..+.... ...|+.+++..
T Consensus 204 d~eAL~~IA~~A~G-s~RdALsLLdQaia~~----~~~It~~~V~~ 244 (700)
T PRK12323 204 EVNALRLLAQAAQG-SMRDALSLTDQAIAYS----AGNVSEEAVRG 244 (700)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 32 26677888777 8889888888766432 23465555443
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.8e-14 Score=167.00 Aligned_cols=203 Identities=19% Similarity=0.270 Sum_probs=146.2
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
++....+|+||+|++++++.|++.+.. .+.++.+||+||+|||||++++++|+.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 345678999999999999999877542 1345578999999999999999999988642
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.++..+ ..+...++++++.+.. ....|+||||+|.|...
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~---------------- 134 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH---------------- 134 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH----------------
Confidence 22222211 1223446666666542 23469999999997432
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL 627 (807)
..|.||..|+. ...++++|.+||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+...++. ++..+
T Consensus 135 ------A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL 203 (830)
T PRK07003 135 ------AFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQAL 203 (830)
T ss_pred ------HHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 24667777774 34578888889999999999998 75 788999999999999999888765554 22337
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
..|++...| +.++..+++..+.... ...|+.+++..
T Consensus 204 ~lIA~~A~G-smRdALsLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 204 RLLARAAQG-SMRDALSLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhc----cCCcCHHHHHH
Confidence 778888877 7888888888777443 23466555544
No 72
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=7.8e-14 Score=143.22 Aligned_cols=204 Identities=16% Similarity=0.220 Sum_probs=134.9
Q ss_pred CcccCccc--ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhH
Q 003619 421 GVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (807)
Q Consensus 421 ~v~F~dVv--G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~ 495 (807)
..+|++.+ +.+.+.+.+++++. ...+.+++|+||+|||||++|+++++.+ +.++++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 46777776 34556666666542 1345689999999999999999999876 5789999998875
Q ss_pred HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEE
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVI 575 (807)
... .+++... ..+.+|+|||+|.+.... .....+..++..+.. ....+|+
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-----------------~~~~~L~~~l~~~~~---~~~~iIi 128 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-----------------EWQEALFHLYNRVRE---AGGRLLI 128 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-----------------HHHHHHHHHHHHHHH---cCCeEEE
Confidence 432 2223222 234699999999875321 011223333333221 1223445
Q ss_pred eccCccCCCC---cccCCCccc--cEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHH
Q 003619 576 AATNRRDLLD---PALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEA 649 (807)
Q Consensus 576 AATN~pd~LD---pALlRpGRF--dr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eA 649 (807)
+++..+..++ +.+.+ |+ ...+.+++|+.+++..+++.++....+. .+.-+..+++...| +.+++.++++++
T Consensus 129 ts~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~ 205 (226)
T TIGR03420 129 AGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDAL 205 (226)
T ss_pred ECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 4444444432 56666 55 5789999999999999999877654443 22236778886555 999999999998
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 003619 650 ALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 650 al~A~rr~~~~It~edl~~Al 670 (807)
...+..++ ..|+.+.+.+.+
T Consensus 206 ~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 206 DRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHhC-CCCCHHHHHHHh
Confidence 87665544 579988887765
No 73
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.7e-15 Score=168.61 Aligned_cols=195 Identities=25% Similarity=0.388 Sum_probs=141.5
Q ss_pred ccccccccccccccccccCCCCCcccCcccccHHHHHHHHHHHHH--hcChhhhhhcCCCCCceEEEEcCCCChHHHHHH
Q 003619 399 WDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRY--LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAK 476 (807)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~--L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LAr 476 (807)
|+.....+++...++.+.+ +|-.|++++|+++.|++.- ++. ...++-++|+||||+|||++++
T Consensus 392 Wgk~S~En~dl~~Ak~iLd-------eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~k 456 (906)
T KOG2004|consen 392 WGKSSTENLDLARAKEILD-------EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAK 456 (906)
T ss_pred CCCCChhhhhHHHHHHhhc-------ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHH
Confidence 4444445555566665544 5678999999999998774 332 2345678899999999999999
Q ss_pred HHHHhcCCCEEEEeCchhHH---------HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 477 AIAGEAGVPFYQMAGSEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 477 ALA~elg~pfi~Is~sel~~---------~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
+||+.+++.|+.++...+.+ .|+|....++-+.++....++| +++|||||.++..- .+++...+..-
T Consensus 457 SIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~---qGDPasALLEl 532 (906)
T KOG2004|consen 457 SIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH---QGDPASALLEL 532 (906)
T ss_pred HHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC---CCChHHHHHHh
Confidence 99999999999998755433 2888888899999999998888 89999999998422 23333222222
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
.+.+.+..++.-+ ||---.-+.|++|||+|..+.|+++|+. |+ ..|+++-+..++..+|-+.|+-
T Consensus 533 LDPEQNanFlDHY--LdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 533 LDPEQNANFLDHY--LDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cChhhccchhhhc--cccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 2222222211110 1111223579999999999999999998 87 5889999999999999988873
No 74
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=9.3e-14 Score=160.15 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=152.9
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE--------
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY-------- 487 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi-------- 487 (807)
..+..+-+|+|++|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+++.-.
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 3445678999999999999988876532 244668999999999999999999998864210
Q ss_pred ----EEeCchhHHH----------HhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 488 ----QMAGSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 488 ----~Is~sel~~~----------~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.-+|..+.+. -...+...++++++.+... ...|++|||+|.+..
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------------ 142 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------------ 142 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------------
Confidence 0011111100 0112345677777776533 345999999998742
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~ 628 (807)
..++.|+..++. .+..+++|.+|+.++.+++.+++ |+ ..+.+..++.++...+++..++..+..-+ ..+.
T Consensus 143 ----~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~ 213 (507)
T PRK06645 143 ----GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALR 213 (507)
T ss_pred ----HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 224566666663 44567777778888889999987 65 57889999999999999999987665433 3377
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.++..+.| +.+++.+++..+...+... ...|+.+++...+.
T Consensus 214 ~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 214 IIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 78888877 8999999999987665321 23688888877653
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=4.6e-14 Score=171.73 Aligned_cols=217 Identities=19% Similarity=0.270 Sum_probs=148.9
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is 490 (807)
+-++++++|+++..+++.++ +.. +...+++|+||||||||++|+.+|+.. +..++.++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~---l~r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDI---LLR---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHH---Hhc---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 35778999999875555443 322 223378999999999999999999875 24477777
Q ss_pred CchhHH--HHhhhhhHHHHHHHHHHHh-CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC
Q 003619 491 GSEFVE--VLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (807)
Q Consensus 491 ~sel~~--~~vG~~~~~ir~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~ 567 (807)
.+.+.. .+.|+.+.+++.+|..+.. ..++||||||||.+.+.++.. +. .+ .. +-|+-.+
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~--------~d-~~---n~Lkp~l---- 312 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQ--------GD-AA---NLLKPAL---- 312 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cc--------cc-HH---HHhhHHh----
Confidence 776652 4778888999999998864 467899999999998654321 00 00 11 2222222
Q ss_pred CCCceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCC----C-CccCHHHHHhhCCCC
Q 003619 568 TGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM----S-DSVDLSSYAKNLPGW 637 (807)
Q Consensus 568 ~~~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l----~-~dvdL~~LA~~T~Gf 637 (807)
.++.+.+|+||+..+ .+|++|.| ||. .|.++.|+.+++.+||+.+.+.... . .+..+..++..+.+|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 246789999998753 48999999 995 8999999999999998766544321 1 233366777777665
Q ss_pred c-----HHHHHHHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 003619 638 T-----GARLAQLVQEAALVAVRK-GHESILSSDMDDAV 670 (807)
Q Consensus 638 S-----gaDL~~Lv~eAal~A~rr-~~~~It~edl~~Al 670 (807)
- |.-.-.++.+|+.....+ ....+..+++.+.+
T Consensus 390 i~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 3 456677888887766543 33444555555444
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.3e-14 Score=162.71 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=147.4
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------- 484 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------- 484 (807)
+.++.+|+||+|++.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 34568999999999999999877652 234568899999999999999999998765
Q ss_pred -----------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 485 -----------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 485 -----------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.++.+++++ ..+...+|++...+.. ....|+||||+|.|...
T Consensus 77 sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~----------------- 133 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH----------------- 133 (702)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------------
Confidence 233333321 1123446666655432 34569999999987532
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~ 628 (807)
..+.|+..++. .+..+.+|.+|+.+..+++.+++ |+ ..+.+.+++.++..+.++..+.+.++.-+ ..+.
T Consensus 134 -----A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~ 203 (702)
T PRK14960 134 -----SFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIW 203 (702)
T ss_pred -----HHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24566666664 34566777777888888888886 65 68899999999999999988877655432 3377
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.+++.+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 204 ~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 204 QIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 78888766 888888888776643 345688888876543
No 77
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=7.5e-14 Score=162.71 Aligned_cols=222 Identities=19% Similarity=0.256 Sum_probs=149.4
Q ss_pred CCCcccCccc-ccHH--HHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe
Q 003619 419 STGVKFSDVA-GIDE--AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 490 (807)
Q Consensus 419 ~~~v~F~dVv-G~de--vkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is 490 (807)
.+..+|++.+ |-.. +...+..++. ++. .....++|||++|||||+|++++++++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3567899977 4432 2223333322 221 122359999999999999999999976 56889999
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 491 ~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
+.+|.+.+.........+.|.. +...+++|+||||+.+..+.. ...+...++|.+.. .+
T Consensus 352 aeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gke~-------------tqeeLF~l~N~l~e-------~g 410 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDKES-------------TQEEFFHTFNTLHN-------AN 410 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCCHH-------------HHHHHHHHHHHHHh-------cC
Confidence 9998877655433323334443 234578999999999865431 22333344444432 12
Q ss_pred ceEEEeccCccC---CCCcccCCCccc--cEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHHHH
Q 003619 571 GVIFLAATNRRD---LLDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 571 ~VIVIAATN~pd---~LDpALlRpGRF--dr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL~~ 644 (807)
.-+||++...|. .+++.|.+ || ...+.+..||.+.|.+||+.++....+.-+.+ ++.|+.+..+ +.++|+.
T Consensus 411 k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~Leg 487 (617)
T PRK14086 411 KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEG 487 (617)
T ss_pred CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHH
Confidence 234444433343 46788988 66 55779999999999999999987766553333 6777887765 7999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
+++.....+...+ ..|+.+.+.+++.....
T Consensus 488 aL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 488 ALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 9998877776544 56999999998876643
No 78
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=2e-13 Score=148.23 Aligned_cols=211 Identities=22% Similarity=0.306 Sum_probs=135.5
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEeC
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMAG 491 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-----~pfi~Is~ 491 (807)
++..+.+|++++|++++++.|.+++.. ....+++|+||||||||++|+++++++. .+++.+++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 444567899999999999998876541 1122699999999999999999999873 45788888
Q ss_pred chhHHHHh-------------hh-------hhHHHHHHHHHHHh-----CCCcEEEeccchhhhhhhcCcccCcchhhhh
Q 003619 492 SEFVEVLV-------------GV-------GSARIRDLFKRAKV-----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (807)
Q Consensus 492 sel~~~~v-------------G~-------~~~~ir~lF~~A~~-----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~ 546 (807)
+++..... +. ....++.+...... ..+.+|+|||+|.+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------- 140 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------- 140 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH--------------
Confidence 77643210 10 11223333333222 23469999999987432
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-Ccc
Q 003619 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSV 625 (807)
Q Consensus 547 ~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dv 625 (807)
....+..+ ++... ....+|.+++.+..+.+.+.+ |+ ..+.+.+|+.++..++++..+...++. ++.
T Consensus 141 -----~~~~L~~~---le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 207 (337)
T PRK12402 141 -----AQQALRRI---MEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDD 207 (337)
T ss_pred -----HHHHHHHH---HHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 11223333 33222 223344455566677777877 54 578999999999999999888766554 333
Q ss_pred CHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003619 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 626 dL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~r 672 (807)
.+..++..+.| +.+++.+.+. ..+. +...|+.+++.+++.+
T Consensus 208 al~~l~~~~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 208 GLELIAYYAGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHcCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhCC
Confidence 47778887754 4445444443 3332 2347999999887653
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.2e-13 Score=162.69 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=147.1
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|+||+|++.+++.|+..+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 34568999999999999988877653 1345568999999999999999999988652
Q ss_pred ------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 486 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 486 ------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
++.++... ..+...+|++.+.+.. ....|+||||+|.|..
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------------ 133 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------------ 133 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------------
Confidence 22232221 1123345666555432 2345999999998753
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~ 628 (807)
...|.||..|+. .+..+++|.+|+.+..|.+.+++ | +..++|..++.++..+.|+..+...++..+ ..+.
T Consensus 134 ----~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--R-C~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~ 204 (647)
T PRK07994 134 ----HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--R-CLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQ 204 (647)
T ss_pred ----HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--h-heEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 235778887774 45567777778889999999998 7 589999999999999999988866554422 3367
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.++..+.| +.++..+++..|... +...|+.+++...+.
T Consensus 205 ~Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 205 LLARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 78888777 788888888776543 334577777766543
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.55 E-value=8.9e-14 Score=151.74 Aligned_cols=203 Identities=19% Similarity=0.219 Sum_probs=133.6
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEe
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQMA 490 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-----~pfi~Is 490 (807)
.++..+.+|+|++|++++++.|+.++.. . . ..++||+||||||||++|+++|+++. ..++.++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~---~--------~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARD---G--------N-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhc---C--------C-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 3455678999999999999988876542 1 1 12689999999999999999999872 2466676
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHH-------hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 491 GSEFVEVLVGVGSARIRDLFKRAK-------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 491 ~sel~~~~vG~~~~~ir~lF~~A~-------~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
.++..+ ...+++.+.... ...+.|++|||+|.+.... + +.|+..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------------q---~aL~~~l 123 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA-------------------Q---QALRRTM 123 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH-------------------H---HHHHHHH
Confidence 664322 112333332211 1235699999999975431 1 2334444
Q ss_pred cCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHH
Q 003619 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARL 642 (807)
Q Consensus 564 dg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL 642 (807)
+... ....+|.+||.+..+.+++++ |. ..+.+++|+.++....++..+++.++. .+..+..++....| +.+.+
T Consensus 124 E~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~a 197 (319)
T PLN03025 124 EIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQA 197 (319)
T ss_pred hccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 4322 334566678888888889987 64 588999999999999999888765544 23347778877765 44444
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 643 ~~Lv~eAal~A~rr~~~~It~edl~~A 669 (807)
.+.++ ..+ .+...|+.+++...
T Consensus 198 ln~Lq---~~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 198 LNNLQ---ATH--SGFGFVNQENVFKV 219 (319)
T ss_pred HHHHH---HHH--hcCCCCCHHHHHHH
Confidence 44444 222 13456888887654
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=5.5e-14 Score=162.47 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=147.1
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
.+..+.+|+||+|++.+++.|+..+..- +.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 4456789999999999999998877531 345578999999999999999999988542
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.++.+. ..+...+|++.+.+.. ....|++|||+|.+...
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---------------- 134 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---------------- 134 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH----------------
Confidence 34444321 1233446666665532 23459999999997532
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL 627 (807)
..|.||..++. .+..+.+|.+|+.+..+.+.+++ |+ ..+++.+++.++....++..+.+.+..- +..+
T Consensus 135 ------a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al 203 (509)
T PRK14958 135 ------SFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAAL 203 (509)
T ss_pred ------HHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 24667777774 34567777777888888888887 64 5778998999988888888887665542 2336
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
..+++.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 204 ~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 204 DLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 778887766 889999999887543 34568887777654
No 82
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.54 E-value=2.2e-13 Score=141.00 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=133.6
Q ss_pred CCcccCccc--ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchh
Q 003619 420 TGVKFSDVA--GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (807)
Q Consensus 420 ~~v~F~dVv--G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel 494 (807)
+..+|+++. +.+.+...++++.. +...+.+++|+||+|||||+||+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 457888876 33455566655443 12345689999999999999999999875 778899998775
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc-eE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG-VI 573 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~-VI 573 (807)
.... .......+|+|||+|.+.... +..+..++..+. .... ++
T Consensus 82 ~~~~--------------~~~~~~~~liiDdi~~l~~~~-------------------~~~L~~~~~~~~---~~~~~~v 125 (227)
T PRK08903 82 LLAF--------------DFDPEAELYAVDDVERLDDAQ-------------------QIALFNLFNRVR---AHGQGAL 125 (227)
T ss_pred HHHH--------------hhcccCCEEEEeChhhcCchH-------------------HHHHHHHHHHHH---HcCCcEE
Confidence 4321 112346799999999864321 122333333322 2233 34
Q ss_pred EEeccCccC--CCCcccCCCccc--cEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CHHHHHhhCCCCcHHHHHHHHHH
Q 003619 574 FLAATNRRD--LLDPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 574 VIAATN~pd--~LDpALlRpGRF--dr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL~~LA~~T~GfSgaDL~~Lv~e 648 (807)
+++++..+. .+.+.|.+ || ...+.+++|+.+++..+++......++.-+. -+..+++..+| +.+++.++++.
T Consensus 126 l~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 126 LVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred EEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 444443332 24566665 66 5799999999999999998877655444222 37778886666 89999999998
Q ss_pred HHHHHHHhCCCccCHHHHHHHHH
Q 003619 649 AALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 649 Aal~A~rr~~~~It~edl~~Al~ 671 (807)
....|.. .+..||...+.+++.
T Consensus 203 l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 203 LDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHH-hCCCCCHHHHHHHHh
Confidence 6665544 447899999888874
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=2.4e-13 Score=154.92 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=146.9
Q ss_pred CCCcccCccc-ccHHH--HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 419 STGVKFSDVA-GIDEA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 419 ~~~v~F~dVv-G~dev--keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
.+..+|++.+ |.... ...++++... +.. .......+++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~---~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKV---SEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhc---ccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4567899976 54332 2333333221 110 001123579999999999999999999875 6889999988
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCce
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~V 572 (807)
+|...+...........|... ...+++|+|||++.+.++.. ..++...++|.+.. ....
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~k~~-------------~qeelf~l~N~l~~-------~~k~ 237 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSGKGA-------------TQEEFFHTFNSLHT-------EGKL 237 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcCChh-------------hHHHHHHHHHHHHH-------CCCc
Confidence 877655433222112234432 24577999999999865321 23344445555442 1234
Q ss_pred EEEeccCccC---CCCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHHHHHH
Q 003619 573 IFLAATNRRD---LLDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLV 646 (807)
Q Consensus 573 IVIAATN~pd---~LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL~~Lv 646 (807)
+|+++++.|. .++++|++ ||. ..+.+.+|+.++|..||+..+...++.-+.+ ++.++....+ +.++|.+.+
T Consensus 238 IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l 314 (445)
T PRK12422 238 IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHAL 314 (445)
T ss_pred EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Confidence 5555555554 46788888 885 7889999999999999999887765443223 6667777765 788899888
Q ss_pred HHHHHH-HHHh-CCCccCHHHHHHHHHHHh
Q 003619 647 QEAALV-AVRK-GHESILSSDMDDAVDRLT 674 (807)
Q Consensus 647 ~eAal~-A~rr-~~~~It~edl~~Al~rv~ 674 (807)
+..+.. |... ....|+.+++.+++....
T Consensus 315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 315 TLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 887532 2211 235699999999998764
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.3e-13 Score=162.04 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=148.8
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
.+..+.+|+||+|++.+++.|+..+.. -+.++.+||+||+|||||++|+++|+.++++
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 345678999999999999999887653 1456689999999999999999999987543
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.++.+ ...+...+++++..+.. ....|+||||+|.+..
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----------------- 133 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----------------- 133 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------------
Confidence 1222211 11233457777765532 2346999999998642
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL 627 (807)
..++.||..|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++....|+..+.+.++.-+ ..+
T Consensus 134 -----~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL 203 (709)
T PRK08691 134 -----SAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPAL 203 (709)
T ss_pred -----HHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 224667777774 33567777788888888888886 65 57788899999999999998887665422 237
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
..|++.+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 204 ~~Ia~~A~G-slRdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 204 QLLGRAAAG-SMRDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 788888866 899999999887754 235688887776643
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.6e-13 Score=162.57 Aligned_cols=208 Identities=19% Similarity=0.240 Sum_probs=141.8
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------EEE-
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM- 489 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf-------i~I- 489 (807)
+.++.+|++|+|++.+++.|++++.. .+.+..+||+||||||||++|+++|+.+++.- ..+
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 44568999999999999998877653 13455679999999999999999999886531 100
Q ss_pred eCchhHHH-------Hh---hhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH
Q 003619 490 AGSEFVEV-------LV---GVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (807)
Q Consensus 490 s~sel~~~-------~v---G~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t 555 (807)
+|-.+.+. +- ..+...+|.+.+.+.. ....|+||||+|.|.. ..
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~----------------------eA 135 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR----------------------SS 135 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH----------------------HH
Confidence 01000000 00 0122345555554432 2345999999999753 23
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHHHHhhC
Q 003619 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNL 634 (807)
Q Consensus 556 Ln~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~LA~~T 634 (807)
++.||..|+. .+.++++|.+|+.+..|.+.+++ |+ ..+.|++++.++..+.|+..+...++.-+ ..+..|+..+
T Consensus 136 qNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5777888874 44567777778888889888887 64 78999999999999999888876544322 2367788887
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 635 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 635 ~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
.| +.|++.+++..+... +...++.+.+..
T Consensus 211 ~G-d~R~ALnLLdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 211 NG-SMRDALSLTDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCcccHHHHHH
Confidence 77 788999998877732 223455555443
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=5.5e-13 Score=139.81 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=132.1
Q ss_pred CCCcccCccc-c-cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCch
Q 003619 419 STGVKFSDVA-G-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (807)
Q Consensus 419 ~~~v~F~dVv-G-~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~se 493 (807)
.+..+|++.+ | ...+...++++.. . ..+.+++|+||+|||||+|++++++++ +..+.+++..+
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4557888877 5 3445555554432 1 123479999999999999999999865 44566666654
Q ss_pred hHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI 573 (807)
.... ..++++... ...+|+|||++.+..+.. ........++.+. + .+...+
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~-------------~~~~lf~l~n~~~---e---~g~~~l 134 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDNIECIAGDEL-------------WEMAIFDLYNRIL---E---SGRTRL 134 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHH-------------HHHHHHHHHHHHH---H---cCCCeE
Confidence 3221 111222211 235899999999864321 1122223333332 1 112235
Q ss_pred EEeccCccCC---CCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHHHHhhCCCCcHHHHHHHHH
Q 003619 574 FLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGWTGARLAQLVQ 647 (807)
Q Consensus 574 VIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~LA~~T~GfSgaDL~~Lv~ 647 (807)
++++++.|.. +.|.|++ |+. ..+.+.+|+.+++.++++..+...++.-+ .-++.++++..| +.+.+.++++
T Consensus 135 i~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~ 211 (235)
T PRK08084 135 LITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLD 211 (235)
T ss_pred EEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHH
Confidence 5666666665 5788998 765 78999999999999999886665444422 227788888877 8899999998
Q ss_pred HHHHHHHHhCCCccCHHHHHHHH
Q 003619 648 EAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 648 eAal~A~rr~~~~It~edl~~Al 670 (807)
.....+.. .+..||.+.+.+++
T Consensus 212 ~l~~~~l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 212 QLDRASIT-AQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHh-cCCCCCHHHHHHHH
Confidence 86434433 34569998888775
No 87
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.52 E-value=3.4e-13 Score=145.99 Aligned_cols=207 Identities=19% Similarity=0.264 Sum_probs=132.3
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
+.++..+.+|+|++|++++++.++.++.. ...|..+||+||||+|||++|++++++.+.+++.+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 34556778999999999999998877651 134556777999999999999999999999999999876
Q ss_pred HHHHhhhhhHHHHHHHHHHH-hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE
Q 003619 495 VEVLVGVGSARIRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI 573 (807)
.. .......+........ ...+++|+|||+|.+... .....+..++ +.. ..++.
T Consensus 79 ~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------------~~~~~L~~~l---e~~--~~~~~ 133 (316)
T PHA02544 79 CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------------DAQRHLRSFM---EAY--SKNCS 133 (316)
T ss_pred cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------------HHHHHHHHHH---Hhc--CCCce
Confidence 11 1111111222111111 135779999999987321 1122333333 322 24567
Q ss_pred EEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC-------CCCCc-cCHHHHHhhCCCCcHHHHHHH
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-------KMSDS-VDLSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 574 VIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~-------~l~~d-vdL~~LA~~T~GfSgaDL~~L 645 (807)
+|.+||.++.+++++++ |+. .+.++.|+.+++.++++.++... +..-+ ..+..++....| |++.+
T Consensus 134 ~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~ 206 (316)
T PHA02544 134 FIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRT 206 (316)
T ss_pred EEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHH
Confidence 78899999999999998 774 78899999999988876543321 11111 124666665544 45555
Q ss_pred HHHHHHHHHHhCCCccCHHHHHH
Q 003619 646 VQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 646 v~eAal~A~rr~~~~It~edl~~ 668 (807)
++.....+. ...++.+++..
T Consensus 207 l~~l~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 207 INELQRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHc---cCCCCHHHHHH
Confidence 554443332 24566655443
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=155.64 Aligned_cols=203 Identities=23% Similarity=0.296 Sum_probs=149.4
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--------------- 483 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg--------------- 483 (807)
..+.+|+||+|++.+++.|++.+.. .+.++.+||+||+|+|||++|+.+|+.++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 4568999999999999988866542 24567899999999999999999998653
Q ss_pred ---------CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhH
Q 003619 484 ---------VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (807)
Q Consensus 484 ---------~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~ 550 (807)
..++.+++++ ..+...++++.+.+... ...|++|||+|.+..
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------------- 130 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------------- 130 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------------
Confidence 2345555432 12344577777766432 345999999998743
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHH
Q 003619 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSS 629 (807)
Q Consensus 551 e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~ 629 (807)
..+|.|+..++. .+..+++|.+|+.++.+.+.+++ |+ ..+.+.+++.++..+.++..+.+.+.. ++..+..
T Consensus 131 ---~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~l 202 (491)
T PRK14964 131 ---SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKL 202 (491)
T ss_pred ---HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 235677777774 34567777778888889988887 65 678999999999999999888776554 2333777
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 630 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 630 LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+++.+.| +.+++.+++..+..++ + ..|+.+++.+.+
T Consensus 203 Ia~~s~G-slR~alslLdqli~y~---~-~~It~e~V~~ll 238 (491)
T PRK14964 203 IAENSSG-SMRNALFLLEQAAIYS---N-NKISEKSVRDLL 238 (491)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHH
Confidence 8888866 8899999998887654 2 468888887653
No 89
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.3e-13 Score=154.17 Aligned_cols=203 Identities=21% Similarity=0.316 Sum_probs=143.1
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|+||+|++++++.|+.++..- +.++.+||+||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 345689999999999999998886631 345567999999999999999999987531
Q ss_pred -----------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhH
Q 003619 486 -----------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (807)
Q Consensus 486 -----------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~ 550 (807)
++.++.++ ..+...++++.+.+.. ..+.|++|||+|.+..
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------------- 130 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------------- 130 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-------------------
Confidence 33343321 1123345555444432 3456999999997532
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHH
Q 003619 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSS 629 (807)
Q Consensus 551 e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~ 629 (807)
..++.|+..++. ...++++|.+||.+..+.+.+.+ |+ ..+.+.+|+.++..+.++..+.+.++..+ ..+..
T Consensus 131 ---~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ 202 (504)
T PRK14963 131 ---SAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQL 202 (504)
T ss_pred ---HHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 235667777764 23456777778888899999987 64 57899999999999999998876665432 23677
Q ss_pred HHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 630 YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 630 LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
++..+.| +.+++.++++.+... ...|+.+++...+
T Consensus 203 ia~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 203 VARLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 8887766 677777777776432 2368888777654
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.2e-13 Score=158.58 Aligned_cols=205 Identities=19% Similarity=0.290 Sum_probs=146.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
.+..+.+|+||+|++.+++.|++++..- +.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 3445689999999999999998876532 345578999999999999999999987641
Q ss_pred ------------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchh
Q 003619 486 ------------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDH 543 (807)
Q Consensus 486 ------------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~ 543 (807)
++.++... ..+...++++.+.+... ...|++|||+|.+...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 22222211 12234567777665432 2359999999997532
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC
Q 003619 544 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 623 (807)
Q Consensus 544 ~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~ 623 (807)
..|.||..++. .+..+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.|+..+.+.++.-
T Consensus 140 -----------a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~i 203 (618)
T PRK14951 140 -----------AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPA 203 (618)
T ss_pred -----------HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 25677777774 34566777777778888888887 64 7889999999999999998887665543
Q ss_pred c-cCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 624 S-VDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 624 d-vdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+ ..+..|++.+.| +.+++.+++..+... +...|+.+++...+
T Consensus 204 e~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 204 EPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 3 237778888877 888888888776654 24568877777654
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.51 E-value=3.1e-13 Score=161.63 Aligned_cols=211 Identities=21% Similarity=0.287 Sum_probs=138.5
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
+.-.+.+|+|++|++++......+...+.. ....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 20 ek~RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 20 DRLRPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred HhcCCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 334568899999999987543322222222 122479999999999999999999999999998887531
Q ss_pred HHhhhhhHHHHHHHHHHH-----hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc
Q 003619 497 VLVGVGSARIRDLFKRAK-----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (807)
Q Consensus 497 ~~vG~~~~~ir~lF~~A~-----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~ 571 (807)
+...++..+..+. .....+|||||+|.+.... .+.|+..++ ...
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q----------------------QdaLL~~lE----~g~ 137 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ----------------------QDALLPWVE----NGT 137 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH----------------------HHHHHHHhc----Cce
Confidence 1112333333331 1345699999999875321 123444333 245
Q ss_pred eEEEeccCc--cCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhc-------CCCC-CccCHHHHHhhCCCCcHHH
Q 003619 572 VIFLAATNR--RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK-------VKMS-DSVDLSSYAKNLPGWTGAR 641 (807)
Q Consensus 572 VIVIAATN~--pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~-------~~l~-~dvdL~~LA~~T~GfSgaD 641 (807)
+++|++|+. ...+++++++ |. ..+.+++++.+++..+++..+.. ..+. ++..+..+++...| +.++
T Consensus 138 IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~ 213 (725)
T PRK13341 138 ITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARS 213 (725)
T ss_pred EEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHH
Confidence 677776643 3468899998 53 57899999999999999988762 1122 12226778887765 7888
Q ss_pred HHHHHHHHHHHHHHhCC--CccCHHHHHHHHHHH
Q 003619 642 LAQLVQEAALVAVRKGH--ESILSSDMDDAVDRL 673 (807)
Q Consensus 642 L~~Lv~eAal~A~rr~~--~~It~edl~~Al~rv 673 (807)
+.++++.|...+..... ..|+.+++.+++.+.
T Consensus 214 lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 214 LLNALELAVESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHHHhcccCCCCceeccHHHHHHHHHHh
Confidence 88888887754322221 236777777776553
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=1.7e-13 Score=167.25 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=123.3
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeC
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~ 491 (807)
-++++++|.++..+++.+++.. +...+++|+||||||||++|+++|..+ +.+++.++.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 3678899999875555544332 223478999999999999999999987 678889888
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHh-CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC
Q 003619 492 SEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (807)
Q Consensus 492 sel~--~~~vG~~~~~ir~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~ 568 (807)
+.+. ..+.|..+.+++.+|..+.. ..++||||||+|.+.+..... +.. .....+.. .-.
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~~---------d~~~~lkp-------~l~ 304 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GAM---------DAGNMLKP-------ALA 304 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cch---------hHHHHhcc-------hhh
Confidence 8776 34778888999999987643 568899999999998654211 100 01112221 123
Q ss_pred CCceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC
Q 003619 569 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV 619 (807)
Q Consensus 569 ~~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~ 619 (807)
++.+.+|++|+..+ .+|+++.| ||+ .|.++.|+.+++..||+......
T Consensus 305 ~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 305 RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 56789999999876 48999999 997 57899999999999998776554
No 93
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2.9e-13 Score=163.33 Aligned_cols=164 Identities=25% Similarity=0.399 Sum_probs=119.6
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH--------
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-------- 496 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-------- 496 (807)
++..|++++|+++.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++++...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 45899999999998887753321 1123447999999999999999999999999999888665322
Q ss_pred -HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC---------C
Q 003619 497 -VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG---------F 566 (807)
Q Consensus 497 -~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg---------~ 566 (807)
.+.|.....+...+..+....| |++|||+|.+....++ + ....|+..+|. +
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---~---------------~~~aLlevld~~~~~~~~d~~ 456 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---D---------------PASALLEVLDPEQNVAFSDHY 456 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---C---------------HHHHHHHHhccccEEEEeccc
Confidence 2455555556666666554555 8999999998754321 0 12234443432 1
Q ss_pred ----CCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 567 ----DTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 567 ----~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
..-+++++|||+|.. .|+++|++ |+. .|.+..++.++..+|.+.++.
T Consensus 457 ~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 457 LEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 123679999999987 59999998 995 789999999999999988884
No 94
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=3.3e-13 Score=164.80 Aligned_cols=202 Identities=19% Similarity=0.268 Sum_probs=144.1
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeC
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~ 491 (807)
-+++.++|.++..+++.+++. . +...+++|+||||||||++++++|... +.+++.++.
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~---r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 357889999987555554432 1 223478999999999999999999875 677888888
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHh-CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC
Q 003619 492 SEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (807)
Q Consensus 492 sel~--~~~vG~~~~~ir~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~ 568 (807)
+.+. ..+.|..+.+++.+|..+.. ..++||||||||.+.+..... + .. ...+.|... ..
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~---------~~---d~~~~Lk~~----l~ 299 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--G---------AM---DAGNMLKPA----LA 299 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--c---------hh---HHHHHhchh----hh
Confidence 7765 45778888899999998865 458999999999997543210 0 00 111222211 23
Q ss_pred CCceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-----CHHHHHhhCCCC-
Q 003619 569 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-----DLSSYAKNLPGW- 637 (807)
Q Consensus 569 ~~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-----dL~~LA~~T~Gf- 637 (807)
+..+.+|++|+..+ .+|+++.| ||. .|.++.|+.+++..||+...........+ .+...+..+.+|
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 56789999999764 47999999 996 58899999999999999877665443332 355555555544
Q ss_pred ----cHHHHHHHHHHHHHHHHHh
Q 003619 638 ----TGARLAQLVQEAALVAVRK 656 (807)
Q Consensus 638 ----SgaDL~~Lv~eAal~A~rr 656 (807)
-|.-.-.++.+|+..+..+
T Consensus 377 ~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 377 TDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred cccCCchHHHHHHHHHHHHHHhh
Confidence 3566778899998776543
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.49 E-value=8e-13 Score=144.84 Aligned_cols=206 Identities=22% Similarity=0.326 Sum_probs=144.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
++.++.+|++++|++++++.|++.+.. .+.++.+||+||||+|||++|+++++.+..+
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344568999999999999999877642 1345678999999999999999999886432
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.+++.. ..+...++.+++.+... ...|++|||+|.+...
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~---------------- 132 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS---------------- 132 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH----------------
Confidence 33333321 11233466666665432 2359999999987421
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL 627 (807)
..+.|+..++. .+.++++|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++.+++..+..-+ ..+
T Consensus 133 ------~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~ 201 (355)
T TIGR02397 133 ------AFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEAL 201 (355)
T ss_pred ------HHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 24566776664 33466777778888888888887 66 57899999999999999998877654422 336
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
..++..+.| +++.+.+.++.+...+ + ..|+.+++.+++.
T Consensus 202 ~~l~~~~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 202 ELIARAADG-SLRDALSLLDQLISFG---N-GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHcCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 667777755 7778877777766553 2 3589888877654
No 96
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=6e-13 Score=151.93 Aligned_cols=190 Identities=19% Similarity=0.296 Sum_probs=132.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeCchhHHHHhhhhhH---HHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSA---RIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~sel~~~~vG~~~~---~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
.+++|+|++|+|||+|++++++++ +..++++++.+|...+...... .+.. |.. +...+++|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~-~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKN-EICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHH-HhccCCEEEEecccccc
Confidence 479999999999999999999854 5788999999988776544222 1222 211 22456799999999886
Q ss_pred hhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCC---CCcccCCCcccc--EEEeccCCCH
Q 003619 531 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNA 605 (807)
Q Consensus 531 ~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~ 605 (807)
.+.. ..++...++|.+.. .+..+|+++...|.. +++.|.+ ||. ..+.+.+|+.
T Consensus 220 ~k~~-------------~~e~lf~l~N~~~~-------~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~ 277 (450)
T PRK14087 220 YKEK-------------TNEIFFTIFNNFIE-------NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDN 277 (450)
T ss_pred CCHH-------------HHHHHHHHHHHHHH-------cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCH
Confidence 4321 22333344444332 122355544444543 5788888 774 5788999999
Q ss_pred HHHHHHHHHHhhcCCC---CCccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHH
Q 003619 606 KGRTEILKIHASKVKM---SDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKG-HESILSSDMDDAVDRL 673 (807)
Q Consensus 606 eeR~eILk~~L~~~~l---~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~-~~~It~edl~~Al~rv 673 (807)
++|.+||+..+...++ -++..+..|+....| +++.|.++++.+...+.... ...|+.+.+.+++...
T Consensus 278 e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 278 KTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999999999876543 122237778888877 89999999999986666543 3679999999999765
No 97
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=3.2e-13 Score=164.35 Aligned_cols=197 Identities=22% Similarity=0.301 Sum_probs=137.5
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeC
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAG 491 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~ 491 (807)
-+++.++|.++.++++.+++.. +...+++|+||||||||++|+++|.+. +.+++.++.
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 3578899999998888776432 344589999999999999999999976 467899998
Q ss_pred chhH--HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC
Q 003619 492 SEFV--EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG 569 (807)
Q Consensus 492 sel~--~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~ 569 (807)
+.+. ..+.|+.+.+++.+++.+....++||||||||.+.+..+.. ++ ......+. ..+ .+
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~----------~~~a~lLk---p~l----~r 305 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA----------IDAANILK---PAL----AR 305 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc----------ccHHHHhH---HHH----hC
Confidence 8776 35678889999999999988889999999999998654211 00 00111122 122 24
Q ss_pred CceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhc----CCCC-CccCHHHHHhhCCCCc-
Q 003619 570 KGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASK----VKMS-DSVDLSSYAKNLPGWT- 638 (807)
Q Consensus 570 ~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~----~~l~-~dvdL~~LA~~T~GfS- 638 (807)
+.+.+|++|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|.
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 5688999998764 47899999 996 5789999999999998754321 2221 2222555555555543
Q ss_pred ----HHHHHHHHHHHHH
Q 003619 639 ----GARLAQLVQEAAL 651 (807)
Q Consensus 639 ----gaDL~~Lv~eAal 651 (807)
|.-.-.++.+|+.
T Consensus 383 ~r~lPdkaidlld~a~a 399 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGS 399 (821)
T ss_pred cccCchHHHHHHHHHHH
Confidence 3334445555543
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=1e-12 Score=155.70 Aligned_cols=220 Identities=18% Similarity=0.222 Sum_probs=144.6
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------C---CCEEEEeCc
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------G---VPFYQMAGS 492 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------g---~pfi~Is~s 492 (807)
.-+.|.|.++..++|..++..... +..++..++|+|+||||||++++.+.+++ + +.+++++|.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 346789999999999888876321 11223345699999999999999998765 2 557899995
Q ss_pred hhHHH----------Hhhh-------hhHHHHHHHHHHH--hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHH
Q 003619 493 EFVEV----------LVGV-------GSARIRDLFKRAK--VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (807)
Q Consensus 493 el~~~----------~vG~-------~~~~ir~lF~~A~--~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~ 553 (807)
.+... +.+. ....+..+|.... .....||+|||||.|.... +
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-------------------Q 886 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-------------------Q 886 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-------------------H
Confidence 43221 1011 1234455565542 2345699999999987532 2
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCc---cCCCCcccCCCccccE-EEeccCCCHHHHHHHHHHHhhcCC-CCCccCHH
Q 003619 554 TTLNQLLIELDGFDTGKGVIFLAATNR---RDLLDPALLRPGRFDR-KIRIRAPNAKGRTEILKIHASKVK-MSDSVDLS 628 (807)
Q Consensus 554 ~tLn~LL~eLdg~~~~~~VIVIAATN~---pd~LDpALlRpGRFdr-~I~I~lPd~eeR~eILk~~L~~~~-l~~dvdL~ 628 (807)
..|..|+.... .....++|||.+|. ++.+++.+.+ ||.. .|.|++++.+++.+||+.++.... .-.+..+.
T Consensus 887 DVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIE 962 (1164)
T PTZ00112 887 KVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQ 962 (1164)
T ss_pred HHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 33445544432 23457899999986 4567888887 6543 478899999999999999987532 11222255
Q ss_pred HHHhhCCCC--cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 629 SYAKNLPGW--TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 629 ~LA~~T~Gf--SgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
.+|+..... ..|..-.+|+.|+..+ +...|+.+|+.+|+.++..
T Consensus 963 LIArkVAq~SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 963 LCARKVANVSGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHh
Confidence 666633321 4455556777777542 4458999999999987744
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=5.6e-13 Score=154.88 Aligned_cols=205 Identities=19% Similarity=0.279 Sum_probs=145.5
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34567999999999999988877653 1345578999999999999999999988552
Q ss_pred ------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 486 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 486 ------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
++.++++. ..+...++++...+.. ....|++|||+|.+..
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------------ 133 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------------ 133 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------------
Confidence 12222110 1233456777766643 2345999999998743
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~ 628 (807)
...|.||..++. .+..+++|.+|+.++.+.+.+++ |+ ..++|+.++.++..+.+...+...++..+ ..+.
T Consensus 134 ----~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~ 204 (527)
T PRK14969 134 ----SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQ 204 (527)
T ss_pred ----HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 234677777775 34567777777778888878776 64 78899999999999888888766554422 2366
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.++..+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 205 ~la~~s~G-slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 205 LLARAAAG-SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 77777765 788888888887654 345678877776543
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=152.63 Aligned_cols=205 Identities=20% Similarity=0.308 Sum_probs=142.2
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------- 484 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------- 484 (807)
+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34567899999999999988877643 134557899999999999999999997753
Q ss_pred -----------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 485 -----------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 485 -----------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.++.++... ..+...++.+.+.+.. ....|++|||+|.+...
T Consensus 78 sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~----------------- 134 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ----------------- 134 (546)
T ss_pred HHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-----------------
Confidence 223333211 0122334555554432 23459999999987532
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~ 628 (807)
..+.||..++. .+..+++|.+|+.+..+.+.+++ |. ..+++.+++.++....++..+.+.++.. +..+.
T Consensus 135 -----a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~ 204 (546)
T PRK14957 135 -----SFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLE 204 (546)
T ss_pred -----HHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34567777774 34566667677778888888877 64 7899999999999988888877655442 23366
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.++..+.| +.+++.+++..+...+ + ..|+.+++.+++.
T Consensus 205 ~Ia~~s~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 205 YIAYHAKG-SLRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 77777755 7888888888777543 2 4688877776543
No 101
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=1.2e-12 Score=137.20 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=131.8
Q ss_pred CCCcccCcccccH-HHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchh
Q 003619 419 STGVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (807)
Q Consensus 419 ~~~v~F~dVvG~d-evkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel 494 (807)
.+..+|++.++-+ .....+..+. .. .....++|+||+|||||+|++++++++ +....+++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~---~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALA---AG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHH---hc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 3457888877443 3333333221 10 123469999999999999999997764 667777776554
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
... +.+.++.. ....+|+|||+|.+..... .+..+..++.... ..+.-+|
T Consensus 81 ~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~~-----------------~~~~lf~l~n~~~---~~~~~vI 130 (233)
T PRK08727 81 AGR--------LRDALEAL--EGRSLVALDGLESIAGQRE-----------------DEVALFDFHNRAR---AAGITLL 130 (233)
T ss_pred hhh--------HHHHHHHH--hcCCEEEEeCcccccCChH-----------------HHHHHHHHHHHHH---HcCCeEE
Confidence 332 22333332 3456999999998764321 1122233333322 1122244
Q ss_pred EeccCccCCC---CcccCCCccc--cEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHHHHHH
Q 003619 575 LAATNRRDLL---DPALLRPGRF--DRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 575 IAATN~pd~L---DpALlRpGRF--dr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~Lv~e 648 (807)
+++.+.|..+ +++|++ || ...+.+++|+.+++.+|++.++...++.- +..+..++..+.| +.+.+.++++.
T Consensus 131 ~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 131 YTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred EECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4444556654 788888 76 56889999999999999998776544432 2237788888875 66777777777
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHH
Q 003619 649 AALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 649 Aal~A~rr~~~~It~edl~~Al~r 672 (807)
....+...+ ..||.+.+.+.+..
T Consensus 208 l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 208 LDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHhC-CCCCHHHHHHHHhh
Confidence 665454444 47999988887754
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.4e-12 Score=152.67 Aligned_cols=204 Identities=24% Similarity=0.313 Sum_probs=147.2
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------- 484 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------- 484 (807)
...+.+|+||+|++++++.|++.+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 34568999999999999999887653 134567899999999999999999997643
Q ss_pred -----------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 485 -----------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 485 -----------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.++.++++. +.+...++++.+.+.. ....|++|||+|.+..
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------------ 133 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------------ 133 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------------
Confidence 233333321 1234456777776553 2345999999998742
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~ 628 (807)
..++.|+..++. .+..+++|.+|+.++.+++.+++ |+ ..+.|++|+.++....++..+.+.++.-+ ..+.
T Consensus 134 ----~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~ 204 (559)
T PRK05563 134 ----GAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALR 204 (559)
T ss_pred ----HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 235677777774 34567777777888999999987 65 46789999999999999988876655433 3367
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
.++....| +.+++.+++..+...+ ...|+.+++..++
T Consensus 205 ~ia~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 205 LIARAAEG-GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 77887766 8888888888776553 3468877766543
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.5e-13 Score=154.02 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=144.3
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+-+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34567899999999999999877652 1345568999999999999999999987532
Q ss_pred --------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 486 --------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 486 --------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
++.++++. ..+...++++.+.+.. ....|++|||+|.+...
T Consensus 75 ~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~--------------- 133 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA--------------- 133 (584)
T ss_pred HHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH---------------
Confidence 22222211 0123345555444432 23459999999987432
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vd 626 (807)
..|.||..|+. .+.++++|.+|+.++.+.+.+++ | ...+.|..++.++..+.++..+.+.+..-+ ..
T Consensus 134 -------A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--R-c~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~a 201 (584)
T PRK14952 134 -------GFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--R-THHYPFRLLPPRTMRALIARICEQEGVVVDDAV 201 (584)
T ss_pred -------HHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--h-ceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 35677777774 44577888888888999999988 6 478999999999999999888877654422 23
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+..++....| +.+++.+++..+...+ +...|+.+++...+
T Consensus 202 l~~Ia~~s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 202 YPLVIRAGGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 5566666654 8889889988876543 34567777776553
No 104
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=1.2e-12 Score=147.78 Aligned_cols=220 Identities=24% Similarity=0.259 Sum_probs=130.9
Q ss_pred cccccHHHHHHHHHHHHH----hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh
Q 003619 426 DVAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG 500 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~----L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-~~vG 500 (807)
.|+|++++++.|...+.. +........-...+..++||+||||||||++|+++|..++.||+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 389999999999766532 21110000000123468999999999999999999999999999999987653 4666
Q ss_pred hhhHH-HHHHHHHH----HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC--------
Q 003619 501 VGSAR-IRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD-------- 567 (807)
Q Consensus 501 ~~~~~-ir~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~-------- 567 (807)
..... +..++..+ ....++||||||||.+..++.+.... . +... ..+.+.||..|++-.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~--~---d~s~---~~vQ~~LL~~Leg~~~~v~~~gg 223 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT--R---DVSG---EGVQQALLKILEGTVASVPPQGG 223 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC--C---Cccc---HHHHHHHHHHHhcCeEEeCCCCC
Confidence 54333 34443322 23567899999999998663211100 0 0011 223455555555421
Q ss_pred ---CCCceEEEeccCccC----------------------------------------------------CCCcccCCCc
Q 003619 568 ---TGKGVIFLAATNRRD----------------------------------------------------LLDPALLRPG 592 (807)
Q Consensus 568 ---~~~~VIVIAATN~pd----------------------------------------------------~LDpALlRpG 592 (807)
...+.++|.|+|-.- -+.|+++ |
T Consensus 224 ~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--g 301 (412)
T PRK05342 224 RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--G 301 (412)
T ss_pred cCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--C
Confidence 112345555555300 0233444 4
Q ss_pred cccEEEeccCCCHHHHHHHHHH----Hhh-------cCCCCCcc---CHHHHHhh--CCCCcHHHHHHHHHHHHHHHHH
Q 003619 593 RFDRKIRIRAPNAKGRTEILKI----HAS-------KVKMSDSV---DLSSYAKN--LPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 593 RFdr~I~I~lPd~eeR~eILk~----~L~-------~~~l~~dv---dL~~LA~~--T~GfSgaDL~~Lv~eAal~A~r 655 (807)
|++..+.+.+.+.++..+|+.. .++ ..++.-.+ -++.|++. ..++-.+.|+.+++....-...
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999999999999999999863 222 11222111 25566664 3445567777777766655443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.3e-12 Score=157.94 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=141.3
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+....+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 34567899999999999998877653 1345578999999999999999999988641
Q ss_pred --------------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 486 --------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 486 --------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
++.++.... .+...+|++.+.+. .....|+||||+|.|..
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------- 134 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------- 134 (824)
T ss_pred HHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------------
Confidence 222222110 12234455444332 23456999999999753
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vd 626 (807)
...|.||..|+. ...++++|.+|+.++.|.+.|++ |. .++.|..++.++..++|+..+.+.++..+ ..
T Consensus 135 ------~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~ea 203 (824)
T PRK07764 135 ------QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGV 203 (824)
T ss_pred ------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 234677777774 34567777778888888888887 53 68899999999999999988876655422 23
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~A 669 (807)
+..+++...| +.+++.++++..+..+ +...|+.+++...
T Consensus 204 l~lLa~~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~al 242 (824)
T PRK07764 204 LPLVIRAGGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Confidence 5667777765 7888888888766332 3445777766543
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.1e-12 Score=147.26 Aligned_cols=183 Identities=22% Similarity=0.360 Sum_probs=124.6
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 485 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------------- 485 (807)
.|++|+|++.+++.|++.+..-+. .+..++.+.++++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999998875322 1233455678899999999999999999999976432
Q ss_pred ------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH
Q 003619 486 ------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (807)
Q Consensus 486 ------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t 555 (807)
+..+.... ...+...++++++.+... ...|+||||+|.+... .
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----------------------a 133 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----------------------A 133 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH----------------------H
Confidence 11121110 112234577888776542 3459999999997532 2
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCC
Q 003619 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP 635 (807)
Q Consensus 556 Ln~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~ 635 (807)
.|.||..|+.. +.++++|.+|+.++.++|.+++ |+ ..+.|++|+.++..++|.... +.. ......++..+.
T Consensus 134 anaLLk~LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~ 204 (394)
T PRK07940 134 ANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQ 204 (394)
T ss_pred HHHHHHHhhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcC
Confidence 35677777643 3344444455558999999998 75 699999999999888776322 232 233567788888
Q ss_pred CCcHHHHH
Q 003619 636 GWTGARLA 643 (807)
Q Consensus 636 GfSgaDL~ 643 (807)
|..+..+.
T Consensus 205 G~~~~A~~ 212 (394)
T PRK07940 205 GHIGRARR 212 (394)
T ss_pred CCHHHHHH
Confidence 86665544
No 107
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.45 E-value=1.5e-12 Score=141.29 Aligned_cols=208 Identities=22% Similarity=0.355 Sum_probs=137.3
Q ss_pred CCCcccCcccccHHHHHH---HHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEeCc
Q 003619 419 STGVKFSDVAGIDEAVEE---LQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGS 492 (807)
Q Consensus 419 ~~~v~F~dVvG~devkee---L~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p---fi~Is~s 492 (807)
-.+-+++|.+|+++...+ |+.+++.=+ -..++||||||||||+||+.|+....-+ |+.++..
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~------------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNR------------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCC------------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 345788999999887643 333333211 2268999999999999999999988766 7777764
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC-----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD 567 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~ 567 (807)
. ...+.+|++|+.++.. ...||||||||.+....+. .||-. .
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD----------------------~fLP~----V 246 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD----------------------TFLPH----V 246 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh----------------------cccce----e
Confidence 2 3445688899888642 4569999999998755332 12211 1
Q ss_pred CCCceEEEeccCc-cC-CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC--------CCCC------ccCHHHHH
Q 003619 568 TGKGVIFLAATNR-RD-LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV--------KMSD------SVDLSSYA 631 (807)
Q Consensus 568 ~~~~VIVIAATN~-pd-~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~--------~l~~------dvdL~~LA 631 (807)
.++.|++|++|.. |. .|..+|++ | ++++.+...+.+.-..||.+-...+ +++. +.-++.++
T Consensus 247 E~G~I~lIGATTENPSFqln~aLlS--R-C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla 323 (554)
T KOG2028|consen 247 ENGDITLIGATTENPSFQLNAALLS--R-CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA 323 (554)
T ss_pred ccCceEEEecccCCCccchhHHHHh--c-cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH
Confidence 2456788877643 33 58889998 5 4678888888999888887744311 1221 11267788
Q ss_pred hhCCCCcHHHHHHHHHHHH-HHHHHhC---CCccCHHHHHHHHHHHhc
Q 003619 632 KNLPGWTGARLAQLVQEAA-LVAVRKG---HESILSSDMDDAVDRLTV 675 (807)
Q Consensus 632 ~~T~GfSgaDL~~Lv~eAa-l~A~rr~---~~~It~edl~~Al~rv~~ 675 (807)
..+.|-..+.|.. +..++ +...+.+ +..++.+|+.+++.+...
T Consensus 324 ~lsdGDaR~aLN~-Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~ 370 (554)
T KOG2028|consen 324 YLSDGDARAALNA-LEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHI 370 (554)
T ss_pred HhcCchHHHHHHH-HHHHHHHHHhhcCCcccceecHHHHHHHHhhccc
Confidence 8888844444433 33332 2233333 347899999999987653
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.45 E-value=3.8e-12 Score=142.54 Aligned_cols=226 Identities=20% Similarity=0.237 Sum_probs=160.2
Q ss_pred CCCCCcccCccc-ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe
Q 003619 417 DGSTGVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA 490 (807)
Q Consensus 417 ~~~~~v~F~dVv-G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is 490 (807)
.-.+..+|++.+ |-... ....-...+...|. ..-..++||||+|.|||||++|+++++ +..+++++
T Consensus 79 ~l~~~ytFdnFv~g~~N~-~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~ 150 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNR-LAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT 150 (408)
T ss_pred cCCCCCchhheeeCCchH-HHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc
Confidence 345678999977 43322 11111111222221 134579999999999999999999876 34588899
Q ss_pred CchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 491 GSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 491 ~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
..+|...++......-.+-|+.-. +-.+++||||+.+.++.. ...+.-.++|.+.. .+
T Consensus 151 se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~-------------~qeefFh~FN~l~~-------~~ 208 (408)
T COG0593 151 SEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKER-------------TQEEFFHTFNALLE-------NG 208 (408)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChh-------------HHHHHHHHHHHHHh-------cC
Confidence 888888877665554555666655 566999999999986632 34556666676643 23
Q ss_pred ceEEEeccCccCCC---CcccCCCccccE--EEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHHHH
Q 003619 571 GVIFLAATNRRDLL---DPALLRPGRFDR--KIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 571 ~VIVIAATN~pd~L---DpALlRpGRFdr--~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL~~ 644 (807)
+-+|+++...|..+ .|.|.+ ||.. .+.+.+|+.+.|..||.......++.-+.+ +..+|.+... +.++|+.
T Consensus 209 kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLeg 285 (408)
T COG0593 209 KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEG 285 (408)
T ss_pred CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHH
Confidence 35667666667764 578888 7765 778899999999999998776665553333 6667777654 8999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHhcC
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g 676 (807)
+++.....|...++ .||.+.+.+++......
T Consensus 286 aL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 286 ALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 99999988877664 89999999999887653
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2e-12 Score=151.49 Aligned_cols=205 Identities=19% Similarity=0.244 Sum_probs=141.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
.+..+.+|+||+|++.+++.|++.+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 344568999999999999999877652 1234589999999999999999999988642
Q ss_pred -------------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 486 -------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 486 -------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
++.+++.. ..+...++.+.+.+. .....||||||+|.+...
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~---------------- 134 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE---------------- 134 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH----------------
Confidence 33343321 011223343333222 234569999999987432
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL 627 (807)
..+.|+..++. ...++++|.+||.+..+.+.+++ |+ ..+.|+.++.++..++|+..+...+.. .+..+
T Consensus 135 ------a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 135 ------AFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred ------HHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 24667777764 33467777888888888888887 65 478999999999999998887765543 22336
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
..+++.+.| +.+++.+++..+. + .+...|+.+++..++
T Consensus 204 ~lIA~~s~G-dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 204 RLIARRAAG-SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 777887766 6777777777653 2 244578988887765
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=5.1e-12 Score=132.50 Aligned_cols=180 Identities=14% Similarity=0.192 Sum_probs=121.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 534 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~ 534 (807)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+... ...+|+|||++.+.++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH
Confidence 3579999999999999999998754 6778889888776531 12222222 235899999998754321
Q ss_pred CcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCC---CCcccCCCccc--cEEEeccCCCHHHHH
Q 003619 535 GIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRF--DRKIRIRAPNAKGRT 609 (807)
Q Consensus 535 ~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~---LDpALlRpGRF--dr~I~I~lPd~eeR~ 609 (807)
...+.-.++|.+ ...+..++++++..|.. ..|.|++ || ...+.+..|+.+++.
T Consensus 115 -------------~~~~Lf~l~n~~-------~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 115 -------------WEEALFHLFNRL-------RDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred -------------HHHHHHHHHHHH-------HhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHH
Confidence 112222233332 23345677777766654 3688888 77 467888999999999
Q ss_pred HHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 610 EILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 610 eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
++++..+...++. ++.-++.++++..+ +.+.+.++++.-...+.. .+..||..-+++++.
T Consensus 173 ~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L~ 233 (234)
T PRK05642 173 RALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHhc
Confidence 9999666554443 22236778888776 899999998887654443 346689888877763
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.44 E-value=2.6e-12 Score=134.80 Aligned_cols=195 Identities=21% Similarity=0.350 Sum_probs=135.3
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
+.....+.+++++|++.+++.|.+-...+.. ..+..++||+|+.|||||++++++..+. |..++.+...
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3455679999999999999999766654322 2467799999999999999999998865 7788888876
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHh-CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--CCC
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKV-NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTG 569 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~-~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~--~~~ 569 (807)
++.. +..++...+. ...-|||+||+.- . . . +.....|-..|||- ..+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF-e-~----------------~---d~~yk~LKs~LeGgle~~P 139 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLSF-E-E----------------G---DTEYKALKSVLEGGLEARP 139 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCCC-C-C----------------C---cHHHHHHHHHhcCccccCC
Confidence 6533 4445555442 2345999998652 1 0 1 11224444555653 457
Q ss_pred CceEEEeccCccCCCCcccC----------CC-----------ccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-C-
Q 003619 570 KGVIFLAATNRRDLLDPALL----------RP-----------GRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-D- 626 (807)
Q Consensus 570 ~~VIVIAATN~pd~LDpALl----------Rp-----------GRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-d- 626 (807)
+||++.||+|+...+++... .| .||...|.|.+|+.++-.+|++.++...++..+. +
T Consensus 140 ~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l 219 (249)
T PF05673_consen 140 DNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEEL 219 (249)
T ss_pred CcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999999998665433221 11 3999999999999999999999999876655431 2
Q ss_pred ---HHHHHhhCCCCcHHHHHHHHHH
Q 003619 627 ---LSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 627 ---L~~LA~~T~GfSgaDL~~Lv~e 648 (807)
....|....|.||+-..+.++.
T Consensus 220 ~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 220 RQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 2233444556777766666553
No 112
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=4.1e-12 Score=135.26 Aligned_cols=189 Identities=19% Similarity=0.221 Sum_probs=117.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch------hHHHHhhhhhHHHHH--------------------HHH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE------FVEVLVGVGSARIRD--------------------LFK 511 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se------l~~~~vG~~~~~ir~--------------------lF~ 511 (807)
+.++||+||||||||++|+++|...+.+++.++|.. +...+.+.......+ .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 357999999999999999999999999999998753 222222211111111 112
Q ss_pred HHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc----CC-------CCCCceEEEeccCc
Q 003619 512 RAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD----GF-------DTGKGVIFLAATNR 580 (807)
Q Consensus 512 ~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd----g~-------~~~~~VIVIAATN~ 580 (807)
.|.. .+.+|+||||+.+... .+..+..+|.+-. +. ....++.||+|+|.
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCC
Confidence 2222 3469999999985432 2333444443311 00 01236789999997
Q ss_pred cC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc--CHHHHHhhCC------CCcHHHHHHHHH
Q 003619 581 RD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV--DLSSYAKNLP------GWTGARLAQLVQ 647 (807)
Q Consensus 581 pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv--dL~~LA~~T~------GfSgaDL~~Lv~ 647 (807)
.. .+++++++ || ..+.++.|+.++..+|++.+.. ..... .+..++..+. ..+ ++..+.
T Consensus 161 ~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~ 231 (262)
T TIGR02640 161 VEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLM 231 (262)
T ss_pred ccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHH
Confidence 53 56888998 87 6889999999999999998752 22111 1222222111 223 444444
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 648 EAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 648 eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
-|...+....+..++.+|+.+.+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 232 IAEVATQQDIPVDVDDEDFVDLCIDILA 259 (262)
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHHhc
Confidence 4444444456778899999988877764
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.43 E-value=4.6e-12 Score=136.37 Aligned_cols=206 Identities=21% Similarity=0.247 Sum_probs=134.4
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEE
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQM 489 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-----~pfi~I 489 (807)
+.++..+.+|+|++|++++++.|+..+.. . ...+++|+||||||||++++++++++. .+++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~---------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE---K---------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC---C---------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 34555678999999999999988877642 1 112589999999999999999999863 345556
Q ss_pred eCchhHHHHhhhhhHHHHHHHHHHHh------CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 490 AGSEFVEVLVGVGSARIRDLFKRAKV------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 490 s~sel~~~~vG~~~~~ir~lF~~A~~------~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
++++... ...++..+..... ..+.+|+|||+|.+.... .+.|+..+
T Consensus 75 ~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~----------------------~~~L~~~l 126 (319)
T PRK00440 75 NASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA----------------------QQALRRTM 126 (319)
T ss_pred ccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH----------------------HHHHHHHH
Confidence 5443211 1112222222111 234599999999874321 12333344
Q ss_pred cCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHH
Q 003619 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARL 642 (807)
Q Consensus 564 dg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL 642 (807)
+.... +..+|.++|.+..+.+++.+ |+. .+++++++.++...+++.++++.+.. .+..+..++..+.| +.+.+
T Consensus 127 e~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~ 200 (319)
T PRK00440 127 EMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKA 200 (319)
T ss_pred hcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 43322 34455567777777777776 654 68999999999999999988766543 23347778887755 56666
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 643 ~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.+.++.+... ...||.+++..++.
T Consensus 201 ~~~l~~~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 201 INALQAAAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHHHc-----CCCCCHHHHHHHhC
Confidence 6666554432 35799999988764
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.5e-12 Score=150.93 Aligned_cols=203 Identities=22% Similarity=0.329 Sum_probs=144.5
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|+||+|++++++.|++.+.. .+.++.+||+||+|+|||++|+++|+.+.++
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 44568999999999999999877653 1345678999999999999999999987542
Q ss_pred ------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 486 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 486 ------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
++.+++.. ..+...++++.+.+... ...|++|||+|.+...
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~----------------- 134 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN----------------- 134 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----------------
Confidence 23333221 11234566666665422 2359999999987532
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~ 628 (807)
..|.|+..|+. .+.++++|.+||.++.|.+.+++ |+ ..+.|..++.++....+...++..++. .+..+.
T Consensus 135 -----a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~ 204 (576)
T PRK14965 135 -----AFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALA 204 (576)
T ss_pred -----HHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 24677777774 44567788888888999999987 64 578899999999888888887766554 233367
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~A 669 (807)
.+++.+.| +.+++.+++..+...+ + ..|+.+++...
T Consensus 205 ~la~~a~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 205 LVARKGDG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 77888776 7788888887766554 2 34777776554
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.6e-12 Score=150.32 Aligned_cols=211 Identities=25% Similarity=0.348 Sum_probs=146.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---EeCch
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ---MAGSE 493 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~---Is~se 493 (807)
...++.+|++|+|++.+++.|+..+.. -+.++.+||+||+|+|||++|+++|+.+.++--. -.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 344678999999999999998877653 1345678999999999999999999987543110 01111
Q ss_pred hHHH-------H-----hhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHH
Q 003619 494 FVEV-------L-----VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (807)
Q Consensus 494 l~~~-------~-----vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn 557 (807)
.... + ...+...++.+.+.+.. ....|++|||+|.+... ..+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------------------A~N 136 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------------------AFN 136 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH----------------------HHH
Confidence 1000 0 00123456777766653 23459999999987432 356
Q ss_pred HHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CHHHHHhhCCC
Q 003619 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPG 636 (807)
Q Consensus 558 ~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL~~LA~~T~G 636 (807)
.||..|+. ++..+++|.+|+.++.|.+.+++ |+ ..+.+.+++.++..+.|+..+...++..+. .+..+|..+.|
T Consensus 137 ALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 137 ALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred HHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77777774 44567777788888999999988 76 588999999999999998887765544322 26677777766
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 637 WTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 637 fSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+.+++.+++..+...+ ...|+.+++.+++
T Consensus 212 -slR~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 212 -SLRDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred -CHHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 7788888888766443 2348888877654
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.7e-12 Score=141.26 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=141.2
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---------- 486 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf---------- 486 (807)
++..+.+|+|++|++.+++.+.+.+.. ...+.++|||||||+|||++|+++|+.+..+.
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 445678999999999998888776642 13456899999999999999999999875421
Q ss_pred --EEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHH
Q 003619 487 --YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLL 560 (807)
Q Consensus 487 --i~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL 560 (807)
+.++.. ...+...++.+++.+.. ..+.||+|||+|.+... .++.++
T Consensus 78 ~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~----------------------~~~~ll 129 (367)
T PRK14970 78 NIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA----------------------AFNAFL 129 (367)
T ss_pred ceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH----------------------HHHHHH
Confidence 222211 11123456666766542 23469999999976421 235566
Q ss_pred HhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcH
Q 003619 561 IELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTG 639 (807)
Q Consensus 561 ~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSg 639 (807)
..++. .+...++|.+|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.++. ++..+..++..+.| +.
T Consensus 130 ~~le~--~~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dl 203 (367)
T PRK14970 130 KTLEE--PPAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-AL 203 (367)
T ss_pred HHHhC--CCCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CH
Confidence 55554 23345556667777888888887 54 478999999999999998888766553 23347777877655 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 640 ARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 640 aDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
+.+.+.++....++ +.. |+.+++...+.
T Consensus 204 r~~~~~lekl~~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 204 RDALSIFDRVVTFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHhc---CCC-CCHHHHHHHhC
Confidence 77777777766554 323 88888776654
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.42 E-value=1.8e-12 Score=138.55 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=132.8
Q ss_pred ccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------E
Q 003619 413 EARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------F 486 (807)
Q Consensus 413 ~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------f 486 (807)
..+.++..+.+|+|++|++.+++.|...+.. +...+.|+|||||||||+.|+++|+++..+ +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3456777889999999999999999877654 122378999999999999999999998652 2
Q ss_pred EEEeCchhHHHHhhhhhHHHHHHHHHHHh------CCC----cEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHH
Q 003619 487 YQMAGSEFVEVLVGVGSARIRDLFKRAKV------NKP----SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTL 556 (807)
Q Consensus 487 i~Is~sel~~~~vG~~~~~ir~lF~~A~~------~~P----sILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tL 556 (807)
...+.++..+.-+ ...+++ -|.+... ..| .|++|||.|.+... +.
T Consensus 92 l~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd----------------------aq 146 (346)
T KOG0989|consen 92 LELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD----------------------AQ 146 (346)
T ss_pred hhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH----------------------HH
Confidence 3344444332211 111111 1222211 122 49999999997643 23
Q ss_pred HHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCC
Q 003619 557 NQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLP 635 (807)
Q Consensus 557 n~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~ 635 (807)
+.|...|+.+. ..+.+|..||..+.|...+.+ |. ..+.|+..+.+.....|+....+.++.-+.+ +..++..+.
T Consensus 147 ~aLrr~mE~~s--~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~ 221 (346)
T KOG0989|consen 147 AALRRTMEDFS--RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISD 221 (346)
T ss_pred HHHHHHHhccc--cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 45666677543 456667779999999998887 64 4677888888778888888887776664444 777888877
Q ss_pred CCcHHHHHHHHHHHHH
Q 003619 636 GWTGARLAQLVQEAAL 651 (807)
Q Consensus 636 GfSgaDL~~Lv~eAal 651 (807)
| +-++....++.+..
T Consensus 222 G-dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 222 G-DLRRAITTLQSLSL 236 (346)
T ss_pred C-cHHHHHHHHHHhhc
Confidence 7 55555555555544
No 118
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.41 E-value=2.2e-12 Score=134.10 Aligned_cols=200 Identities=22% Similarity=0.326 Sum_probs=123.6
Q ss_pred CCcccCccc-cc--HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeC
Q 003619 420 TGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG 491 (807)
Q Consensus 420 ~~v~F~dVv-G~--devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~ 491 (807)
+..+|++.+ |- ..+....+.+.. ++. .....++||||+|+|||+|++|++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899975 53 223333333322 222 122368999999999999999998864 677999999
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCc
Q 003619 492 SEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKG 571 (807)
Q Consensus 492 sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~ 571 (807)
.+|...+...........|.. .....++|+||++|.+.++.. ..++.-.+++.+.. .+.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~-~~~~~DlL~iDDi~~l~~~~~-------------~q~~lf~l~n~~~~-------~~k 131 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKD-RLRSADLLIIDDIQFLAGKQR-------------TQEELFHLFNRLIE-------SGK 131 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHH-HHCTSSEEEEETGGGGTTHHH-------------HHHHHHHHHHHHHH-------TTS
T ss_pred HHHHHHHHHHHHcccchhhhh-hhhcCCEEEEecchhhcCchH-------------HHHHHHHHHHHHHh-------hCC
Confidence 998877654432221222322 223567999999999875421 22333334444332 234
Q ss_pred eEEEeccCccCC---CCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHHHHH
Q 003619 572 VIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 572 VIVIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL~~L 645 (807)
.+|+++...|.. +++.|.+ ||. ..+.+.+|+.+.|.+|++..+...++.-+.+ ++.+++...+ +.++|..+
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~ 208 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGA 208 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHH
Confidence 466666566665 4667777 664 4889999999999999999988776663333 6667777655 89999999
Q ss_pred HHHHHHHH
Q 003619 646 VQEAALVA 653 (807)
Q Consensus 646 v~eAal~A 653 (807)
++.....+
T Consensus 209 l~~l~~~~ 216 (219)
T PF00308_consen 209 LNRLDAYA 216 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877655
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.9e-12 Score=147.58 Aligned_cols=205 Identities=22% Similarity=0.288 Sum_probs=143.0
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------ 484 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------ 484 (807)
+...+.+|++++|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 344678999999999999988876532 234568999999999999999999998743
Q ss_pred ------------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 485 ------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 485 ------------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
.++.++++. ..+...++.+...+... ...|++|||+|.+...
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---------------- 134 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---------------- 134 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH----------------
Confidence 122222211 11233466666655432 2359999999987421
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL 627 (807)
..+.|+..++. ++..+++|.+|+.+..+.+++++ |+ ..+.+++|+.++....++..+...+.. ++..+
T Consensus 135 ------A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal 203 (605)
T PRK05896 135 ------AWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAI 203 (605)
T ss_pred ------HHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23567776663 34567777778888999999987 65 478999999999999998887665533 22336
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
..++..+.| +.+++.++++.+...+ + ..|+.+++.+.+
T Consensus 204 ~~La~lS~G-dlR~AlnlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 204 DKIADLADG-SLRDGLSILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 677777766 7888888888755443 3 238888877653
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=7.5e-12 Score=144.95 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=142.1
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------ 484 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~------------ 484 (807)
++..+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345678999999999999999877642 134557799999999999999999997632
Q ss_pred ------------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 485 ------------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 485 ------------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
.++.++++. ..+...++++...+... ...|++|||+|.+..
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----------------- 131 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----------------- 131 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------------
Confidence 123333221 01234566666554321 234999999998743
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL 627 (807)
...+.||..++.. +..+.+|.+|+.+..+.+++++ | ...+++.+++.++..+.++..+...+..- +..+
T Consensus 132 -----~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--R-c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al 201 (535)
T PRK08451 132 -----EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--R-TQHFRFKQIPQNSIISHLKTILEKEGVSYEPEAL 201 (535)
T ss_pred -----HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--h-ceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2346677777753 3456666667778999999998 7 46889999999999999988887655442 2346
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
..++....| +.+++.+++..+...+ ...|+.+++.+
T Consensus 202 ~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 202 EILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 777887766 8889999988877665 23455555543
No 121
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=1.6e-12 Score=143.05 Aligned_cols=220 Identities=21% Similarity=0.320 Sum_probs=132.9
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCE--EEEe
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPF--YQMA 490 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------g~pf--i~Is 490 (807)
....|++|+|++++++.|.-.+. + ....++||.|+||||||++|+++++-+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~---------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---D---------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---c---------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999887763211 0 112479999999999999999999977 3321 1111
Q ss_pred C-chh--------HH---------------HHhhhhhHHHHHH-------HHHH--HhCCCcEEEeccchhhhhhhcCcc
Q 003619 491 G-SEF--------VE---------------VLVGVGSARIRDL-------FKRA--KVNKPSVIFIDEIDALATRRQGIF 537 (807)
Q Consensus 491 ~-sel--------~~---------------~~vG~~~~~ir~l-------F~~A--~~~~PsILfIDEID~L~~~r~~~~ 537 (807)
+ .+. .. ...|. -.+... |..- ......+||||||+.+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~--~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~----- 143 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGA--LDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH----- 143 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecc--hhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH-----
Confidence 0 000 00 01110 000000 1100 0122359999999997543
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHhh------cCC--CCCCceEEEeccCccC-CCCcccCCCccccEEEeccCCCH-HH
Q 003619 538 KDTTDHLYNAATQERETTLNQLLIEL------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPNA-KG 607 (807)
Q Consensus 538 ~~~~d~~~~~~~~e~~~tLn~LL~eL------dg~--~~~~~VIVIAATN~pd-~LDpALlRpGRFdr~I~I~lPd~-ee 607 (807)
.+..+.+.+.+- +|. ..+.++++|+++|..+ .++++++. ||...+.++.|.. ++
T Consensus 144 --------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e 207 (334)
T PRK13407 144 --------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVET 207 (334)
T ss_pred --------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHH
Confidence 222233333221 111 1345689999999755 58889998 9999999998876 89
Q ss_pred HHHHHHHHhhcCC----C------C---------------Ccc-----C---HHHHHhhCC-CCcHHHHHHHHHHHHHHH
Q 003619 608 RTEILKIHASKVK----M------S---------------DSV-----D---LSSYAKNLP-GWTGARLAQLVQEAALVA 653 (807)
Q Consensus 608 R~eILk~~L~~~~----l------~---------------~dv-----d---L~~LA~~T~-GfSgaDL~~Lv~eAal~A 653 (807)
|.+|++....... . . ..+ . +..++..+. .-.-+++. +++.|...|
T Consensus 208 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A 286 (334)
T PRK13407 208 RVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALA 286 (334)
T ss_pred HHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHH
Confidence 9999987532110 0 0 000 0 222333332 12344555 999999999
Q ss_pred HHhCCCccCHHHHHHHHHHHhc
Q 003619 654 VRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 654 ~rr~~~~It~edl~~Al~rv~~ 675 (807)
..++++.|+.+|+..+..-+..
T Consensus 287 ~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 287 AFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HHcCCCeeCHHHHHHHHHHhhh
Confidence 9999999999999888765554
No 122
>PRK06620 hypothetical protein; Validated
Probab=99.40 E-value=4.8e-12 Score=131.24 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=125.9
Q ss_pred CCCcccCccc-cc--HHHHHHHHHHHHHhcChhhhhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 419 STGVKFSDVA-GI--DEAVEELQELVRYLKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 419 ~~~v~F~dVv-G~--devkeeL~eiV~~L~~pe~~~~lGl~~-p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.+..+|++++ |- +.+...++++.+ .+ +..+ ...++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4567899976 44 234455554432 11 2222 2579999999999999999999988753322 1111
Q ss_pred HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEE
Q 003619 495 VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIF 574 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIV 574 (807)
. ...+ ...++|+|||||.+. ..+...++|.+. ..+..++
T Consensus 79 ~-----------~~~~-----~~~d~lliDdi~~~~------------------~~~lf~l~N~~~-------e~g~~il 117 (214)
T PRK06620 79 N-----------EEIL-----EKYNAFIIEDIENWQ------------------EPALLHIFNIIN-------EKQKYLL 117 (214)
T ss_pred c-----------hhHH-----hcCCEEEEeccccch------------------HHHHHHHHHHHH-------hcCCEEE
Confidence 0 0111 233689999999531 112233344332 2344677
Q ss_pred EeccCccCC--CCcccCCCcccc--EEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHHHHHHH
Q 003619 575 LAATNRRDL--LDPALLRPGRFD--RKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEA 649 (807)
Q Consensus 575 IAATN~pd~--LDpALlRpGRFd--r~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~Lv~eA 649 (807)
|+++..|.. + ++|++ |+. ..+.+.+|+.+++..+++..+...++.- +..++.++.+..| +.+.+.++++..
T Consensus 118 its~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 118 LTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred EEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 777766654 5 77887 765 3789999999999999988887544432 2237778888876 889999999886
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 003619 650 ALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 650 al~A~rr~~~~It~edl~~Al 670 (807)
...+... +..||...+.+++
T Consensus 194 ~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 194 NYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHc-CCCCCHHHHHHHh
Confidence 5444443 3579988888765
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.3e-12 Score=147.24 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=148.7
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE------
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM------ 489 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I------ 489 (807)
..+..+.+|+||+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3445678999999999999999887652 24566899999999999999999999876432111
Q ss_pred -------eCchhHHH----------HhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 490 -------AGSEFVEV----------LVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 490 -------s~sel~~~----------~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
+|..+.+. -...+...+|++++.+... ...|++|||+|.+...
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~---------------- 147 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA---------------- 147 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH----------------
Confidence 11111100 0012344577777766532 3469999999987432
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCH
Q 003619 549 TQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDL 627 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL 627 (807)
..|.||..|+. .+..+++|.+|+.++.+.+.+++ |+ ..+.++.++.++....++..+++.+..-+ ..+
T Consensus 148 ------a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl 216 (598)
T PRK09111 148 ------AFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEAL 216 (598)
T ss_pred ------HHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 24667777764 33456666677777788888887 65 68999999999999999988876655433 336
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
..+++.+.| +.+++.+++..+.... ...|+.+++...+.
T Consensus 217 ~lIa~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~llg 255 (598)
T PRK09111 217 ALIARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHHHhC
Confidence 667777766 8889888888766442 34699998887654
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=7.5e-12 Score=143.03 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=139.8
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------- 485 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------- 485 (807)
+...+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+..+
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 344568999999999999988877653 1345679999999999999999999977432
Q ss_pred --------------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 486 --------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 486 --------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
++.+++... .+...++.+.+... .....|++|||+|.+...
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------------- 136 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------------- 136 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---------------
Confidence 233332110 11223333333222 245679999999987432
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvd 626 (807)
..+.|+..++. .+..+++|.+||.+..+.+++++ |+ ..++++.++.++..+.+...+.+.+.. ++..
T Consensus 137 -------~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~a 204 (451)
T PRK06305 137 -------AFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREA 204 (451)
T ss_pred -------HHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 24567777775 33466777777888889889887 65 578999999999999988887765543 2233
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+..++..+.| +.+++.++++...... + ..|+.+++..++
T Consensus 205 l~~L~~~s~g-dlr~a~~~Lekl~~~~---~-~~It~~~V~~l~ 243 (451)
T PRK06305 205 LLPIARAAQG-SLRDAESLYDYVVGLF---P-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHhc---c-CCcCHHHHHHHH
Confidence 6778887765 6667666666654332 2 348888877665
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.9e-12 Score=143.57 Aligned_cols=210 Identities=23% Similarity=0.303 Sum_probs=140.4
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEE-E
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQ-M 489 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-------pfi~-I 489 (807)
...+.+|++++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++ |.-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 34567899999999999988877643 123456899999999999999999998753 1110 0
Q ss_pred eCchhHH-----HH-----hhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH
Q 003619 490 AGSEFVE-----VL-----VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (807)
Q Consensus 490 s~sel~~-----~~-----vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t 555 (807)
+|..+.. .+ ...+...++.+.+.+.. ....|++|||+|.+... .
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~----------------------a 135 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE----------------------A 135 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH----------------------H
Confidence 1111100 00 01123335555554432 23469999999987422 2
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CHHHHHhhC
Q 003619 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNL 634 (807)
Q Consensus 556 Ln~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL~~LA~~T 634 (807)
.+.|+..++.. +..+++|.+|+.++.+++++.+ |+ ..+.+++|+.++....++.+++..++.-+. .+..++..+
T Consensus 136 ~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 136 FNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 35666666642 3345555566777888888887 65 478999999999999999988876654322 366777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 635 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 635 ~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
.| +.+++.++++.+...+ ...|+.+++..++
T Consensus 211 ~G-~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 211 EG-GMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred CC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 65 7888888888876442 3468888887754
No 126
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-11 Score=136.99 Aligned_cols=218 Identities=19% Similarity=0.304 Sum_probs=152.1
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----EEEEeCchhHHHH-
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-----FYQMAGSEFVEVL- 498 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p-----fi~Is~sel~~~~- 498 (807)
+++.+.++.++.+..++....+ ...|.+++++||||||||.+++.+++++.-+ ++++||....+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3488999999999888765322 2345579999999999999999999987433 8999996543321
Q ss_pred --------------hhhhhHH-HHHHHHHHH-hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh
Q 003619 499 --------------VGVGSAR-IRDLFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (807)
Q Consensus 499 --------------vG~~~~~-ir~lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e 562 (807)
.|..... ...+++... ....-||+|||+|.|..+.+ ..+..|+..
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------------~~LY~L~r~ 149 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------------EVLYSLLRA 149 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------------hHHHHHHhh
Confidence 1111111 222222222 24566999999999976531 345666665
Q ss_pred hcCCCCCCceEEEeccCccC---CCCcccCCCcccc-EEEeccCCCHHHHHHHHHHHhhcCCCCCcc--C-H---HHHHh
Q 003619 563 LDGFDTGKGVIFLAATNRRD---LLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSV--D-L---SSYAK 632 (807)
Q Consensus 563 Ldg~~~~~~VIVIAATN~pd---~LDpALlRpGRFd-r~I~I~lPd~eeR~eILk~~L~~~~l~~dv--d-L---~~LA~ 632 (807)
.+.. ..++.+|+.+|..+ .+|+.+.+ ++. ..|.|++++.+|..+|++......-..... + + ..++.
T Consensus 150 ~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 150 PGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred cccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 5543 56788999998764 58898887 443 468999999999999999887643211111 1 3 33344
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 633 ~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
...| +.+-.-.+++.|+..|.+++...++.+++..|.+...
T Consensus 226 ~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 226 AESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred HcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh
Confidence 4545 6677778999999999999999999999999955443
No 127
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=7.3e-12 Score=141.16 Aligned_cols=219 Identities=22% Similarity=0.276 Sum_probs=131.9
Q ss_pred ccccHHHHHHHHHHHHH----hcCh-hhhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-HHh
Q 003619 427 VAGIDEAVEELQELVRY----LKNP-ELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLV 499 (807)
Q Consensus 427 VvG~devkeeL~eiV~~----L~~p-e~~~~lGl-~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-~~v 499 (807)
|+|++++++.+...+.. +... ......++ ....++||+||||||||++|+++|..++.||..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 68999999999776632 2110 00000011 12358999999999999999999999999999999887643 366
Q ss_pred hhh-hHHHHHHHHHH----HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC-------
Q 003619 500 GVG-SARIRDLFKRA----KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------- 567 (807)
Q Consensus 500 G~~-~~~ir~lF~~A----~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~------- 567 (807)
|.. ...+..++..+ ....++||||||||.+..++.+.... .+.... .+.+.||+.|+|..
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~-----~dvsg~---~vq~~LL~iLeG~~~~v~~~~ 230 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSIT-----RDVSGE---GVQQALLKIIEGTVANVPPQG 230 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccc-----ccccch---hHHHHHHHHhhccceecccCC
Confidence 653 23334443322 23467899999999998754221100 000111 23344555555431
Q ss_pred ----CCCceEEEeccCcc---------------------------C-----------------------CCCcccCCCcc
Q 003619 568 ----TGKGVIFLAATNRR---------------------------D-----------------------LLDPALLRPGR 593 (807)
Q Consensus 568 ----~~~~VIVIAATN~p---------------------------d-----------------------~LDpALlRpGR 593 (807)
...+.++|.|+|-. + .+.|+++ ||
T Consensus 231 gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gR 308 (413)
T TIGR00382 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GR 308 (413)
T ss_pred CccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CC
Confidence 12346677777750 0 0224444 49
Q ss_pred ccEEEeccCCCHHHHHHHHHHH----hhc----C---CCCC---ccCHHHHHhh--CCCCcHHHHHHHHHHHHHHHHH
Q 003619 594 FDRKIRIRAPNAKGRTEILKIH----ASK----V---KMSD---SVDLSSYAKN--LPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 594 Fdr~I~I~lPd~eeR~eILk~~----L~~----~---~l~~---dvdL~~LA~~--T~GfSgaDL~~Lv~eAal~A~r 655 (807)
++..+.+.+.+.++..+|+... ++. . ++.- +.-++.+++. ...+-.|.|+.+++....-+..
T Consensus 309 ld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 309 LPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 9999999999999999998652 221 1 1111 1125566664 3345567788887777665544
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.3e-12 Score=140.91 Aligned_cols=215 Identities=19% Similarity=0.253 Sum_probs=140.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-E--------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-Y-------- 487 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf-i-------- 487 (807)
+.-.+.+|++|+|++.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 344568999999999999988876652 24456799999999999999999999886521 0
Q ss_pred -EEeCch------hHH-------HHhh---hhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhh
Q 003619 488 -QMAGSE------FVE-------VLVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYN 546 (807)
Q Consensus 488 -~Is~se------l~~-------~~vG---~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~ 546 (807)
.-.|.. +.. .+.+ .+...++++.+.+.. ....|++|||+|.+...
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-------------- 142 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-------------- 142 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------------
Confidence 001110 000 0011 123445555555421 22359999999987532
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-Ccc
Q 003619 547 AATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSV 625 (807)
Q Consensus 547 ~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dv 625 (807)
..+.|+..++. .+...++|.+|+.+..+.+++.+ |. ..+++.+++.++..+.++..++..+.. .+.
T Consensus 143 --------~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 143 --------AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred --------HHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23456666663 33345555566667777778876 54 378899999999888888877655443 223
Q ss_pred CHHHHHhhCCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003619 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAV 670 (807)
Q Consensus 626 dL~~LA~~T~GfSgaDL~~Lv~eAal~A~r-r~~~~It~edl~~Al 670 (807)
.+..++..+.| +.+.+.+.++.+..++.. .....|+.+++.+.+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 36777777765 788888888877766532 234578988887765
No 129
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=6.8e-12 Score=144.07 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=155.4
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------EEE-
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-------YQM- 489 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf-------i~I- 489 (807)
+.++.+|+|++|++.+...|.+.+..=+ ...+.|+.||.|||||++||.+|+.+++.- ..+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 3456889999999999999998877533 334679999999999999999999876531 111
Q ss_pred eCc--------hhHH--HHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH
Q 003619 490 AGS--------EFVE--VLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (807)
Q Consensus 490 s~s--------el~~--~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t 555 (807)
+|. ++.+ .-...+-..+|++.+.+.. ....|.+|||+|.|.. +.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~----------------------~a 135 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK----------------------QA 135 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH----------------------HH
Confidence 111 1111 1122245567888877653 2345999999998753 35
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhC
Q 003619 556 LNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNL 634 (807)
Q Consensus 556 Ln~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T 634 (807)
+|.||..++ +++..|++|.+|..+..+++.+++ |. .++.+..-+.++....|+..+.+.++..+.+ +..+|+..
T Consensus 136 fNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a 210 (515)
T COG2812 136 FNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAA 210 (515)
T ss_pred HHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHc
Confidence 688998888 467789999999999999999997 63 5677889999999999999998877775544 67788888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003619 635 PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 635 ~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~A 669 (807)
.| +.+|...++..|..... ..|+.+.+...
T Consensus 211 ~G-s~RDalslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 211 EG-SLRDALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred CC-ChhhHHHHHHHHHHccC----CcccHHHHHHH
Confidence 77 89999999999886652 44555555443
No 130
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=8.5e-12 Score=139.84 Aligned_cols=87 Identities=29% Similarity=0.485 Sum_probs=60.5
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhhc-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh-h
Q 003619 426 DVAGIDEAVEELQELVRY-LKNPELFDKM-GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-V 501 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~-L~~pe~~~~l-Gl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-~~vG-~ 501 (807)
.|+|++++++.+...+.. ++.......+ .--+|+++||+||||||||++|+++|..++.||+.+++..+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 488999999999766653 2222111111 1234689999999999999999999999999999999877653 4555 2
Q ss_pred hhHHHHHHHHH
Q 003619 502 GSARIRDLFKR 512 (807)
Q Consensus 502 ~~~~ir~lF~~ 512 (807)
.+..++.+|+.
T Consensus 93 vE~i~r~l~e~ 103 (441)
T TIGR00390 93 VESMVRDLTDA 103 (441)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 131
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.37 E-value=1e-11 Score=149.25 Aligned_cols=165 Identities=24% Similarity=0.356 Sum_probs=113.3
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-----HHhh
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----VLVG 500 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-----~~vG 500 (807)
.|+|++++++.|.+.+...+..-. . .-+|...+||+||||||||++|+++|..++.+++.++|+++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 478999999999988876422100 0 0133457999999999999999999999999999999988753 3333
Q ss_pred hhhHH----HHHHH-HHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC---C-----
Q 003619 501 VGSAR----IRDLF-KRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---D----- 567 (807)
Q Consensus 501 ~~~~~----ir~lF-~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~---~----- 567 (807)
..... ....+ +..+....|||||||||.+.+. ..+.|++.||.- +
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~----------------------v~~~LLq~ld~G~ltd~~g~~ 593 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD----------------------VFNLLLQVMDNGTLTDNNGRK 593 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH----------------------HHHHHHHHHhcCeeecCCCce
Confidence 21110 11122 3334456689999999997432 234444444421 1
Q ss_pred -CCCceEEEeccCcc-------------------------CCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 568 -TGKGVIFLAATNRR-------------------------DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 568 -~~~~VIVIAATN~p-------------------------d~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
.-.++++|+|||.- ..+.|.++. |+|.+|.|++.+.++..+|+...+.
T Consensus 594 vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred ecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 12468899999932 124566666 9999999999999999999887664
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.1e-11 Score=145.09 Aligned_cols=204 Identities=19% Similarity=0.255 Sum_probs=143.4
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+..+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 34567899999999999998877652 1345679999999999999999999987542
Q ss_pred ------------EEEEeCchhHHHHhhhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 486 ------------FYQMAGSEFVEVLVGVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 486 ------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
++.+++.. ..+...++++.+.+. .....|++|||+|.+..
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------------ 133 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------------ 133 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------------
Confidence 22222110 012234555554433 23456999999998742
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~ 628 (807)
..++.||..++. .+..+++|.+|+.+..+.+++++ |+ ..+.+.+++.++..+.++..+...++.- +..+.
T Consensus 134 ----~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~ 204 (563)
T PRK06647 134 ----SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALK 204 (563)
T ss_pred ----HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 234677777774 44567777777778889999887 65 4688999999999999988886655442 23366
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
.++....| +.+++.+++..+...+ ...|+.+++..++
T Consensus 205 lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 205 WIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 77877766 7888888888776543 2458888777654
No 133
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.37 E-value=8.6e-12 Score=139.86 Aligned_cols=88 Identities=31% Similarity=0.477 Sum_probs=63.0
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-HHhh-h
Q 003619 426 DVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVG-V 501 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~-L~~pe~~~~lG-l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-~~vG-~ 501 (807)
.|+|++++++.+...+.. ++.......+. -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999877643 22211111111 013579999999999999999999999999999999988875 4766 3
Q ss_pred hhHHHHHHHHHH
Q 003619 502 GSARIRDLFKRA 513 (807)
Q Consensus 502 ~~~~ir~lF~~A 513 (807)
.+..++++|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 134
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-12 Score=147.52 Aligned_cols=286 Identities=21% Similarity=0.259 Sum_probs=181.3
Q ss_pred cccceEEEEEEEEeccccccccccccccchhhhhhhHHHHHHhhcCCCcccccccccCcchHHHHHHhHHHHHHHHHHHH
Q 003619 303 AVTSFIFVTTVYVVWPIARPFVNIFRGLILGIIENISDYIVDLSGEGGILSKFYEFYTFGGLSASLEMLKPITLVILTMV 382 (807)
Q Consensus 303 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~ 382 (807)
...|++++..++..+|.+..++ ++++.+- ++.++++ ..|.|+| ..+++.+-.+....--
T Consensus 60 ~~~Gl~ll~~i~~~~~~~pVI~------~Tg~g~i--~~AV~A~-k~GA~Df------------l~KP~~~~~L~~~v~r 118 (464)
T COG2204 60 GMDGLELLKEIKSRDPDLPVIV------MTGHGDI--DTAVEAL-RLGAFDF------------LEKPFDLDRLLAIVER 118 (464)
T ss_pred CCchHHHHHHHHhhCCCCCEEE------EeCCCCH--HHHHHHH-hcCccee------------eeCCCCHHHHHHHHHH
Confidence 5678888899999999999998 8888877 8888886 4688888 4455554444444433
Q ss_pred HHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEE
Q 003619 383 LLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVL 462 (807)
Q Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVL 462 (807)
.+....+....+. ........+.+++|.+.+++++++.+..+...+. +||
T Consensus 119 al~~~~~~~e~~~--------------------~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VL 168 (464)
T COG2204 119 ALELRELQRENRR--------------------SLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVL 168 (464)
T ss_pred HHHHhhhhhhhhh--------------------hhhccccccCCceecCHHHHHHHHHHHHHhCCCC----------CEE
Confidence 3321111110000 1111234567899999999999999988765543 799
Q ss_pred EEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH-----Hhhhhh-------HHHHHHHHHHHhCCCcEEEeccch
Q 003619 463 LEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-----LVGVGS-------ARIRDLFKRAKVNKPSVIFIDEID 527 (807)
Q Consensus 463 L~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~-----~vG~~~-------~~ir~lF~~A~~~~PsILfIDEID 527 (807)
|+|++||||.++|++|.+.. +.||+.+||..+... +.|... .+....|+.|. ...||||||.
T Consensus 169 I~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~ 245 (464)
T COG2204 169 ITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIG 245 (464)
T ss_pred EECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccc
Confidence 99999999999999998755 679999999766544 223111 11223444443 4499999999
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CCCC----CCceEEEeccCccCCCCcccCCCccccE-----
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFDT----GKGVIFLAATNRRDLLDPALLRPGRFDR----- 596 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~~~----~~~VIVIAATN~pd~LDpALlRpGRFdr----- 596 (807)
.+.-. .+..+...|++-. .+.. +-+|.||+|||..-. .....|+|..
T Consensus 246 ~mpl~-------------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~---~~v~~G~FReDLyyR 303 (464)
T COG2204 246 EMPLE-------------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE---EEVAAGRFREDLYYR 303 (464)
T ss_pred cCCHH-------------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH---HHHHcCCcHHHHHhh
Confidence 87533 3333444444322 2221 235899999997432 2223344433
Q ss_pred --EEeccCCCHHHHHH----HHHHHhhc----CCC-CCccCHHHHHhh----CCCCcHHHHHHHHHHHHHHHHHhCCCcc
Q 003619 597 --KIRIRAPNAKGRTE----ILKIHASK----VKM-SDSVDLSSYAKN----LPGWTGARLAQLVQEAALVAVRKGHESI 661 (807)
Q Consensus 597 --~I~I~lPd~eeR~e----ILk~~L~~----~~l-~~dvdL~~LA~~----T~GfSgaDL~~Lv~eAal~A~rr~~~~I 661 (807)
++.+..|...+|.+ ++++++++ .+. ...++-+.++.. .+| +.++|+|++++++..+ ....|
T Consensus 304 LnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~---~~~~i 379 (464)
T COG2204 304 LNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPG-NVRELENVVERAVILS---EGPEI 379 (464)
T ss_pred hccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC---Ccccc
Confidence 67788899888877 33444433 222 133333333332 334 6789999999998777 45667
Q ss_pred CHHHHHH
Q 003619 662 LSSDMDD 668 (807)
Q Consensus 662 t~edl~~ 668 (807)
+.+++..
T Consensus 380 ~~~~l~~ 386 (464)
T COG2204 380 EVEDLPL 386 (464)
T ss_pred chhhccc
Confidence 7777653
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.35 E-value=1.3e-11 Score=136.48 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=141.7
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEE--
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-------VPFYQM-- 489 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-------~pfi~I-- 489 (807)
.+...|++|+|++++|..|.-. +.+| ...|+||.|++|||||++|++++.-+. .||...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~---~~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILN---VIDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHh---ccCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3467899999999999888533 2233 224899999999999999999977541 233200
Q ss_pred ----eCchhHHHH-------------------hhhhhHH------HHHHHHHHH---------hCCCcEEEeccchhhhh
Q 003619 490 ----AGSEFVEVL-------------------VGVGSAR------IRDLFKRAK---------VNKPSVIFIDEIDALAT 531 (807)
Q Consensus 490 ----s~sel~~~~-------------------vG~~~~~------ir~lF~~A~---------~~~PsILfIDEID~L~~ 531 (807)
.+++..... .+.+..+ +...|.... .....+|||||++.+..
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000111100 0111111 111111111 12345999999999765
Q ss_pred hhcCcccCcchhhhhhhhHHHHHHHHHHHHh----h--cCC--CCCCceEEEeccCccC-CCCcccCCCccccEEEeccC
Q 003619 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIE----L--DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRA 602 (807)
Q Consensus 532 ~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e----L--dg~--~~~~~VIVIAATN~pd-~LDpALlRpGRFdr~I~I~l 602 (807)
.. +..+.+.+.+ + +|. ..+.++++|++.|..+ .++++++. ||...+.+..
T Consensus 159 ~~-------------------Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~ 217 (350)
T CHL00081 159 HL-------------------VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRT 217 (350)
T ss_pred HH-------------------HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCC
Confidence 42 2222333322 1 111 1245688999888765 58999999 9999999999
Q ss_pred CC-HHHHHHHHHHHhhcC--CCC-----------------------CccC--------HHHHHhhCCCCcHHHHHHHHHH
Q 003619 603 PN-AKGRTEILKIHASKV--KMS-----------------------DSVD--------LSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 603 Pd-~eeR~eILk~~L~~~--~l~-----------------------~dvd--------L~~LA~~T~GfSgaDL~~Lv~e 648 (807)
|+ .+.+.+|++...... ... ..+. +..++..+.--+++.-..+++-
T Consensus 218 ~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 218 VKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred CCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 97 599999998753211 000 0010 2333444433467777778899
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHhcCCc
Q 003619 649 AALVAVRKGHESILSSDMDDAVDRLTVGPK 678 (807)
Q Consensus 649 Aal~A~rr~~~~It~edl~~Al~rv~~g~~ 678 (807)
|...|..++++.|+.+|+..+..-+..+..
T Consensus 298 ArA~Aal~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 298 AKALAAFEGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888776543
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.34 E-value=3.2e-11 Score=145.44 Aligned_cols=202 Identities=23% Similarity=0.321 Sum_probs=131.2
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH-----Hh
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-----LV 499 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~-----~v 499 (807)
+.|+|++++++.+.+.+...+..- .. .-+|...+||+||||||||++|+++|+.++.+++.++++++.+. +.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~--~~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGL--GN-PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCC--CC-CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 457899999998888776532110 00 01233458999999999999999999999999999999987652 22
Q ss_pred hhhh-----HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--------
Q 003619 500 GVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------- 566 (807)
Q Consensus 500 G~~~-----~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-------- 566 (807)
|... .....+.+..+....+||+|||+|.+.+. ..+.|++.+|.-
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~----------------------~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPD----------------------IYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHH----------------------HHHHHHHhhccCeeecCCCc
Confidence 2211 11222334445566789999999986432 234444444431
Q ss_pred -CCCCceEEEeccCccC-------------------------CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC-
Q 003619 567 -DTGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV- 619 (807)
Q Consensus 567 -~~~~~VIVIAATN~pd-------------------------~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~- 619 (807)
..-.++++|+|||... .+.|.++. |+|.+|.|.+.+.++..+|++..+.+.
T Consensus 589 ~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~ 666 (731)
T TIGR02639 589 KADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELS 666 (731)
T ss_pred ccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 0124678899998632 14556665 999999999999999999998777532
Q ss_pred ------CCC---CccCHHHHHhh--CCCCcHHHHHHHHHHHHHHH
Q 003619 620 ------KMS---DSVDLSSYAKN--LPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 620 ------~l~---~dvdL~~LA~~--T~GfSgaDL~~Lv~eAal~A 653 (807)
++. .+..++.++.. ...+..+.|+.+++.-....
T Consensus 667 ~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 667 KQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 111 11124455553 34455677777777655444
No 137
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.33 E-value=5.5e-11 Score=140.70 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=134.9
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQM 489 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~I 489 (807)
.+.+|++++|++...+.+...+ .. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4578999999999888765433 11 234579999999999999999998755 4679999
Q ss_pred eCchhH-------HHHhhhhhH----HHHHHHHH----------HHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhh
Q 003619 490 AGSEFV-------EVLVGVGSA----RIRDLFKR----------AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAA 548 (807)
Q Consensus 490 s~sel~-------~~~vG~~~~----~ir~lF~~----------A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~ 548 (807)
+|..+. ..+.+.... ..+..+.. .......+|||||++.|....
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~--------------- 281 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL--------------- 281 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH---------------
Confidence 987642 111221100 01111110 012234699999999875432
Q ss_pred hHHHHHHHHHHHHhhc-----------------------CCCCCCceEEEec-cCccCCCCcccCCCccccEEEeccCCC
Q 003619 549 TQERETTLNQLLIELD-----------------------GFDTGKGVIFLAA-TNRRDLLDPALLRPGRFDRKIRIRAPN 604 (807)
Q Consensus 549 ~~e~~~tLn~LL~eLd-----------------------g~~~~~~VIVIAA-TN~pd~LDpALlRpGRFdr~I~I~lPd 604 (807)
+..+..++..-. ....+..+++|++ |+.++.++++|++ ||. .+.+++++
T Consensus 282 ----Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 282 ----QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred ----HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 122222222100 0011234566655 5568889999987 876 66889999
Q ss_pred HHHHHHHHHHHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHHHh
Q 003619 605 AKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEAALVAVRK--------GHESILSSDMDDAVDRLT 674 (807)
Q Consensus 605 ~eeR~eILk~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr--------~~~~It~edl~~Al~rv~ 674 (807)
.++...|++..+......- +.-+..++..+. .++...+++..+...+..+ ....|+.+|+.+++..-.
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 9999999999887654321 222455555543 5666666666665444221 223689999999887544
No 138
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=6.9e-12 Score=142.70 Aligned_cols=249 Identities=24% Similarity=0.330 Sum_probs=153.1
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
...+|++|+|.+.+..++.+.+..+.. .+-.|||.|.+||||.++|+++-+.+ +.||+.+||..+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457899999999998888877766543 34489999999999999999998755 78999999977654
Q ss_pred HHh-----hh--------hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 497 VLV-----GV--------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 497 ~~v-----G~--------~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
.+. |. ....-...|+.|.. ..||||||..+.- ..+..+...|++-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-------------------~LQaKLLRVLQEk 367 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-------------------PLQAKLLRVLQEK 367 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-------------------HHHHHHHHHHhhc
Confidence 422 21 11113445655543 3899999988643 2444555555552
Q ss_pred c--CC----CCCCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHHH----HHHHhh----cCC--
Q 003619 564 D--GF----DTGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTEI----LKIHAS----KVK-- 620 (807)
Q Consensus 564 d--g~----~~~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~eI----Lk~~L~----~~~-- 620 (807)
+ .+ ..+-+|.||||||+.-. .....|+|.. ++.+..|+..+|.+= ..+++. +.+
T Consensus 368 ei~rvG~t~~~~vDVRIIAATN~nL~---~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~ 444 (560)
T COG3829 368 EIERVGGTKPIPVDVRIIAATNRNLE---KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRN 444 (560)
T ss_pred eEEecCCCCceeeEEEEEeccCcCHH---HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCC
Confidence 2 11 12346899999997322 2223344433 566678888888762 223333 222
Q ss_pred ---CCCccCHHHHHh-hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH-HHHHHHhcCCcccCcccccCcchhHHHH
Q 003619 621 ---MSDSVDLSSYAK-NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD-DAVDRLTVGPKRRGIELGNQGQSRRAAT 695 (807)
Q Consensus 621 ---l~~dvdL~~LA~-~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~-~Al~rv~~g~~~~~~~l~~~ek~~iA~h 695 (807)
++++. +..+.+ ..+| +.++|+|++.++...+. ....|+.+|+. .++......+... ...+..-...++.
T Consensus 445 v~~ls~~a-~~~L~~y~WPG-NVRELeNviER~v~~~~--~~~~I~~~~lp~~~l~~k~~~~~~~--~~~~~~~l~~~~e 518 (560)
T COG3829 445 VKGLSPDA-LALLLRYDWPG-NVRELENVIERAVNLVE--SDGLIDADDLPAFALEEKEPRPETT--KQIEVGSLKEALE 518 (560)
T ss_pred cccCCHHH-HHHHHhCCCCc-hHHHHHHHHHHHHhccC--CcceeehhhcchhhhcccccCcCcc--cCcccccHHHHHH
Confidence 22222 333333 3556 88999999999997553 33458888877 5554431211111 1112222334555
Q ss_pred HHHHHHHHHHhhhc
Q 003619 696 EVGVAMISHLLRRY 709 (807)
Q Consensus 696 EaGhAvva~lL~~~ 709 (807)
+.-..++..+|..+
T Consensus 519 ~~Ek~~I~~aL~~~ 532 (560)
T COG3829 519 EYEKHLIREALERH 532 (560)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666776654
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.7e-11 Score=140.85 Aligned_cols=214 Identities=18% Similarity=0.250 Sum_probs=141.6
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ--------- 488 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~--------- 488 (807)
...+.+|++|+|++.+++.|+..+.. .+.+..+||+||+|||||++|+++|+.+.+.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 34568999999999999998876542 2445679999999999999999999988652100
Q ss_pred -EeCc------hhHH-------HHhh---hhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 489 -MAGS------EFVE-------VLVG---VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 489 -Is~s------el~~-------~~vG---~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
-.|. .+.. .+.+ .+...++++.+.+.. ....|++|||+|.+...
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------- 142 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--------------- 142 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH---------------
Confidence 0111 0000 0011 123456665555522 23459999999987432
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvd 626 (807)
..+.|+..++.. +..+++|.+|+.+..|.+.+++ | ...+++..++.++....+...+...+.. .+..
T Consensus 143 -------a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--R-c~~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 -------AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--R-CQRFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred -------HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--h-ceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 245677777642 3345555566667888888876 5 3689999999999888888877655443 2334
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVR-KGHESILSSDMDDAV 670 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~r-r~~~~It~edl~~Al 670 (807)
+..++..+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7777877765 777777777776655521 224568888887765
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.9e-11 Score=141.86 Aligned_cols=201 Identities=22% Similarity=0.305 Sum_probs=138.6
Q ss_pred CCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------------
Q 003619 418 GSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------ 485 (807)
Q Consensus 418 ~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p------------ 485 (807)
+..+.+|++++|++++++.|+..+..- +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 345678999999999999998876531 234579999999999999999999988652
Q ss_pred --------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 486 --------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 486 --------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
++.++.. ...+...++++++.+.. ....|++|||+|.+..
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------- 135 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------- 135 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------
Confidence 1122111 12344567888776643 2345999999998742
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvd 626 (807)
...+.||..++. ....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....+...+.+.+..- ...
T Consensus 136 ------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~a 204 (620)
T PRK14948 136 ------AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEA 204 (620)
T ss_pred ------HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 234677777774 44567777777888888888887 64 6788988988888887777766544332 223
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
+..++..+.| +.+++.++++...... ..|+.+++.+
T Consensus 205 l~~La~~s~G-~lr~A~~lLeklsL~~-----~~It~e~V~~ 240 (620)
T PRK14948 205 LTLVAQRSQG-GLRDAESLLDQLSLLP-----GPITPEAVWD 240 (620)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhcc-----CCCCHHHHHH
Confidence 6777777766 5677777776644331 2466666554
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=1.8e-11 Score=134.98 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=136.4
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEE--------
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFY-------- 487 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------g~pfi-------- 487 (807)
.|+.|+|++++|..|.-. +-+| ...+++|.|+||+|||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~---~~~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLN---VIDP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHH---hcCC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 588999999998877422 1122 23579999999999999999999765 22221
Q ss_pred -EEeCchh----------------HH--------HHhhhhhHHHHHHH-------H--HHHhCCCcEEEeccchhhhhhh
Q 003619 488 -QMAGSEF----------------VE--------VLVGVGSARIRDLF-------K--RAKVNKPSVIFIDEIDALATRR 533 (807)
Q Consensus 488 -~Is~sel----------------~~--------~~vG~~~~~ir~lF-------~--~A~~~~PsILfIDEID~L~~~r 533 (807)
..+|... .+ .+.|.. .+...+ . ........+|||||++.+....
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~ 147 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL 147 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH
Confidence 0111110 00 111110 011100 0 0011234699999999975432
Q ss_pred cCcccCcchhhhhhhhHHHHHHHHHHHHhh------cCC--CCCCceEEEeccCccC-CCCcccCCCccccEEEeccCCC
Q 003619 534 QGIFKDTTDHLYNAATQERETTLNQLLIEL------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPN 604 (807)
Q Consensus 534 ~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL------dg~--~~~~~VIVIAATN~pd-~LDpALlRpGRFdr~I~I~lPd 604 (807)
+..+.+.+.+- +|. ..+.++++|+++|..+ .++++++. ||...+.++.|+
T Consensus 148 -------------------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~ 206 (337)
T TIGR02030 148 -------------------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVR 206 (337)
T ss_pred -------------------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCC
Confidence 22233333221 111 1234688999988655 68999999 999999999987
Q ss_pred H-HHHHHHHHHHhhcC----C----C-----------------CCccC--------HHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 605 A-KGRTEILKIHASKV----K----M-----------------SDSVD--------LSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 605 ~-eeR~eILk~~L~~~----~----l-----------------~~dvd--------L~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
. ++|.+|++...... . . ..++. +..++..+..-+.+.-..+++-|.
T Consensus 207 ~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raAr 286 (337)
T TIGR02030 207 DVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAK 286 (337)
T ss_pred CHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 5 88999997743210 0 0 01110 233344444336677778999999
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHhcCC
Q 003619 651 LVAVRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 651 l~A~rr~~~~It~edl~~Al~rv~~g~ 677 (807)
..|..++++.|+.+|+..+..-+..+.
T Consensus 287 A~Aal~GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 287 ALAAFEGRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988776543
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.6e-11 Score=140.75 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=138.9
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE----------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---------- 486 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf---------- 486 (807)
++..+.+|+||+|++.+++.|+..+..= +.++.+||+||+|+|||++|+++|+.+.+..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 3445689999999999999998776531 2345689999999999999999999875321
Q ss_pred ---------------EEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 487 ---------------YQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 487 ---------------i~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
+.++.+. ..+...++++.+.+.. ....|++|||+|.+..
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------- 134 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------- 134 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------------
Confidence 1222110 1122345555544332 2345999999998742
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVD 626 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvd 626 (807)
..++.||..++... ..+++|.+++..+.+.+.+++ |+ ..+.|..++..+...++...+...++.- +..
T Consensus 135 ------~a~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~ea 203 (585)
T PRK14950 135 ------AAFNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGA 203 (585)
T ss_pred ------HHHHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 22456677766432 445666666777777778876 54 4688999999999999888876655432 223
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 627 LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 627 L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
+..++..+.| +.+++.+.++....+ +...|+.+++...+.
T Consensus 204 l~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 204 LEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 6777877766 888888888865443 235688888776543
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.28 E-value=5.6e-11 Score=110.24 Aligned_cols=124 Identities=43% Similarity=0.615 Sum_probs=82.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhHH---HHHHHHHHHhCCCcEEEeccchhhh
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSAR---IRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~~~~---ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
.+.+++|+||||||||++++.+++.+ +.+++.+++.+............ ....+..+....+++|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34589999999999999999999998 89999999887665433322211 1222334455678899999999863
Q ss_pred hhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-CCCCceEEEeccCccC--CCCcccCCCccccEEEecc
Q 003619 531 TRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-DTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIR 601 (807)
Q Consensus 531 ~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-~~~~~VIVIAATN~pd--~LDpALlRpGRFdr~I~I~ 601 (807)
.. ....+..++..+... ....++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 ~~-------------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HH-------------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 21 111222222222111 1235688888888876 67777776 888777765
No 144
>PRK09087 hypothetical protein; Validated
Probab=99.28 E-value=5.4e-11 Score=124.38 Aligned_cols=172 Identities=14% Similarity=0.136 Sum_probs=116.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCccc
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 538 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 538 (807)
..++|+||+|+|||||+++++...+.. +++..++..... ..... .+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC-------
Confidence 359999999999999999999887654 444433332221 11111 3799999997531
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCC---CCcccCCCcccc--EEEeccCCCHHHHHHHHH
Q 003619 539 DTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDL---LDPALLRPGRFD--RKIRIRAPNAKGRTEILK 613 (807)
Q Consensus 539 ~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~---LDpALlRpGRFd--r~I~I~lPd~eeR~eILk 613 (807)
...+.-.++|.+.+ .+..+||+++..|.. ..+.|++ |+. ..+.+.+|+.++|.++++
T Consensus 102 ---------~~~~lf~l~n~~~~-------~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 102 ---------DETGLFHLINSVRQ-------AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred ---------CHHHHHHHHHHHHh-------CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHH
Confidence 11223344444432 234566666655553 3678887 764 689999999999999999
Q ss_pred HHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 003619 614 IHASKVKMSD-SVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRL 673 (807)
Q Consensus 614 ~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv 673 (807)
.+++..++.- +..++.|+++..| +.+.+..+++.....+...+ ..||...+.+++...
T Consensus 164 ~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 164 KLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9998765542 2337788888875 67778877777766665544 569999999988754
No 145
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=9.5e-11 Score=132.12 Aligned_cols=201 Identities=24% Similarity=0.319 Sum_probs=128.0
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 497 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~ 497 (807)
...+.+|+|.+.+...+.+.++.....+ .+|||+|.+||||..+||+|-+.. +.||+++||+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 5778899999999999998888765443 389999999999999999998755 789999999876654
Q ss_pred Hhhh-hhHHHHHHHHHHHh--------CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh--hcCC
Q 003619 498 LVGV-GSARIRDLFKRAKV--------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE--LDGF 566 (807)
Q Consensus 498 ~vG~-~~~~ir~lF~~A~~--------~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e--Ldg~ 566 (807)
.... --...+..|.-|.. .....||||||..+.-. .+..+...|++ ++.+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-------------------lQaKLLRvLQegEieRv 349 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-------------------LQAKLLRVLQEGEIERV 349 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH-------------------HHHHHHHHHhhcceeec
Confidence 2211 01112223332221 23448999999886532 34445555554 3333
Q ss_pred CCCC----ceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH---HH-HHHhhc----CCCC-Ccc-
Q 003619 567 DTGK----GVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE---IL-KIHASK----VKMS-DSV- 625 (807)
Q Consensus 567 ~~~~----~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e---IL-k~~L~~----~~l~-~dv- 625 (807)
..+. +|.||||||+.-. .+ .+.|+|.. ++.+..|+..+|.+ +| ++++.+ .+.. ..+
T Consensus 350 G~~r~ikVDVRiIAATNRDL~--~~-V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 350 GGDRTIKVDVRVIAATNRDLE--EM-VRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred CCCceeEEEEEEEeccchhHH--HH-HHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 3322 4899999997322 22 23355533 44556788887765 22 333332 2221 111
Q ss_pred --CHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 626 --DLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 626 --dL~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
.++.+.+..---+.++|++++++|+..|
T Consensus 427 ~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 1445555433338899999999999988
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.25 E-value=5.5e-11 Score=141.21 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=137.8
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------------------- 482 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------------------- 482 (807)
.|.+|+|++.++..|.-. +.+|. ..+|||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 588999999998776422 22221 2479999999999999999999876
Q ss_pred ---------------CCCEEEEeCchhHHHHhhhhh--HHH--------HHHHHHHHhCCCcEEEeccchhhhhhhcCcc
Q 003619 483 ---------------GVPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEIDALATRRQGIF 537 (807)
Q Consensus 483 ---------------g~pfi~Is~sel~~~~vG~~~--~~i--------r~lF~~A~~~~PsILfIDEID~L~~~r~~~~ 537 (807)
..||+.+.++.....++|... ..+ ..++.. ....|||||||+.+....
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~~~---- 142 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDDHL---- 142 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCHHH----
Confidence 357777766544444444311 000 111111 233599999999976432
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHhhcCC-----------CCCCceEEEeccCccC-CCCcccCCCccccEEEeccCCC-
Q 003619 538 KDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIRAPN- 604 (807)
Q Consensus 538 ~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-----------~~~~~VIVIAATN~pd-~LDpALlRpGRFdr~I~I~lPd- 604 (807)
.+.|+..|+.- ..+.++++|+++|..+ .+.++|+. ||+..|.++.|.
T Consensus 143 ------------------q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~ 202 (633)
T TIGR02442 143 ------------------VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRD 202 (633)
T ss_pred ------------------HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCc
Confidence 23344444311 1234689999998643 58889998 999999988764
Q ss_pred HHHHHHHHHHHhhcCC-------------------------CCCcc-----CHHHHHhhC--CCC-cHHHHHHHHHHHHH
Q 003619 605 AKGRTEILKIHASKVK-------------------------MSDSV-----DLSSYAKNL--PGW-TGARLAQLVQEAAL 651 (807)
Q Consensus 605 ~eeR~eILk~~L~~~~-------------------------l~~dv-----dL~~LA~~T--~Gf-SgaDL~~Lv~eAal 651 (807)
.+++.++++....... +...+ .+..++..+ .|. +.+....+++-|..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 203 PEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred hHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 5777777765322000 00011 122222221 233 45666778899999
Q ss_pred HHHHhCCCccCHHHHHHHHHHHhcC
Q 003619 652 VAVRKGHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 652 ~A~rr~~~~It~edl~~Al~rv~~g 676 (807)
.|..+++..|+.+|+.+|+.-++.+
T Consensus 283 ~AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 283 LAALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred HHHHcCCCcCCHHHHHHHHHHHhhh
Confidence 9999999999999999998877643
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.25 E-value=1.3e-11 Score=134.88 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=121.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH--HhhhhhHH----------HHHHHHHHHhCCCcEEEecc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSAR----------IRDLFKRAKVNKPSVIFIDE 525 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~--~vG~~~~~----------ir~lF~~A~~~~PsILfIDE 525 (807)
+++|||.||||||||++++.+|..++.|++.++++.-... ++|...-. ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 4589999999999999999999999999999998765443 44432110 112233443 3567899999
Q ss_pred chhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh-----hc----CCCCCCceEEEeccCccC------------CC
Q 003619 526 IDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE-----LD----GFDTGKGVIFLAATNRRD------------LL 584 (807)
Q Consensus 526 ID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e-----Ld----g~~~~~~VIVIAATN~pd------------~L 584 (807)
+|...++ ....++.+|.. +. .+....++.||||+|..+ .+
T Consensus 143 in~a~p~-------------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l 203 (327)
T TIGR01650 143 YDAGRPD-------------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQI 203 (327)
T ss_pred hhccCHH-------------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecC
Confidence 9985432 33445556552 11 112345789999999854 36
Q ss_pred CcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc----CHHHHHhhC----------CCCcHHHHHHHHHHHH
Q 003619 585 DPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV----DLSSYAKNL----------PGWTGARLAQLVQEAA 650 (807)
Q Consensus 585 DpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv----dL~~LA~~T----------~GfSgaDL~~Lv~eAa 650 (807)
++|++. ||-..+.+..|+.++-.+|+...........+. .+.++|..+ .+.|+|.+..+++.+.
T Consensus 204 ~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 204 NQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred CHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHH
Confidence 889998 998899999999999999998765432210000 022233322 2456776666665544
Q ss_pred HHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 651 LVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 651 l~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
.. + .++..|++....
T Consensus 282 ~f----~------~~~~~a~~~~~~ 296 (327)
T TIGR01650 282 IF----D------HDIALAFRLTFL 296 (327)
T ss_pred hh----C------ccHHHHHHHHHH
Confidence 33 1 256777776654
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.8e-10 Score=134.57 Aligned_cols=204 Identities=21% Similarity=0.300 Sum_probs=140.3
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--------------
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------- 484 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-------------- 484 (807)
..+.+|+||+|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 3567999999999999998877652 134567999999999999999999997753
Q ss_pred -----------CEEEEeCchhHHHHhhhhhHHHHHHHHHHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhh
Q 003619 485 -----------PFYQMAGSEFVEVLVGVGSARIRDLFKRAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAAT 549 (807)
Q Consensus 485 -----------pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~ 549 (807)
.++.+++.+ ..+...++.+...+... ...|++|||+|.+...
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~----------------- 136 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA----------------- 136 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH-----------------
Confidence 222232221 01234566666655432 2349999999987432
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CHH
Q 003619 550 QERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLS 628 (807)
Q Consensus 550 ~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL~ 628 (807)
..+.|+..|+. .+...++|.+|+.+..+-+.+++ |. ..+.|.+++.++....++..+...++..+. .+.
T Consensus 137 -----a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~ 206 (614)
T PRK14971 137 -----AFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALN 206 (614)
T ss_pred -----HHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24567777774 33456666677777888888887 64 579999999999999998888776655333 367
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 629 SYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 629 ~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.|+..+.| +.+++.+++.....++ +.. |+.+++.+.+.
T Consensus 207 ~La~~s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l~ 244 (614)
T PRK14971 207 VIAQKADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENLN 244 (614)
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHhC
Confidence 77877755 7777777777665554 322 77766665543
No 149
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.23 E-value=4e-10 Score=122.67 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=78.3
Q ss_pred EEEeccCc------------cCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CHHHHHhhCCCCcH
Q 003619 573 IFLAATNR------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTG 639 (807)
Q Consensus 573 IVIAATN~------------pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL~~LA~~T~GfSg 639 (807)
++|.|||+ |.-+|..|+. |+ ..|...+++.++.++|++..++...+.-+. .++.++.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 66677775 3446777776 54 477888999999999999998776655333 37788887777788
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 640 ARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 640 aDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
+-.-+|+.-|...|.+++...|..+|+++|.+-..
T Consensus 399 RYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFL 433 (450)
T ss_pred HHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHh
Confidence 88889999999999999999999999999976554
No 150
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=2.3e-10 Score=132.21 Aligned_cols=213 Identities=22% Similarity=0.284 Sum_probs=132.8
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 482 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el------------------ 482 (807)
...|+||.|++.+++.+.-. +..+.+++|.||||||||++++++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 35899999999987766422 2344689999999999999999998632
Q ss_pred ----------CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHH
Q 003619 483 ----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQER 552 (807)
Q Consensus 483 ----------g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~ 552 (807)
..||...+++......+|.+.......+..| ...+|||||++.+... .
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~~-------------------~ 311 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKRS-------------------V 311 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCHH-------------------H
Confidence 2344444443333333333222222234333 3459999999986532 2
Q ss_pred HHHHHHHHHhhc----C----CCCCCceEEEeccCcc------C-----------------CCCcccCCCccccEEEecc
Q 003619 553 ETTLNQLLIELD----G----FDTGKGVIFLAATNRR------D-----------------LLDPALLRPGRFDRKIRIR 601 (807)
Q Consensus 553 ~~tLn~LL~eLd----g----~~~~~~VIVIAATN~p------d-----------------~LDpALlRpGRFdr~I~I~ 601 (807)
...+.+.|+.-. . ..-+.++.+|+++|.- + .+...|++ |||..+.++
T Consensus 312 ~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~ 389 (499)
T TIGR00368 312 LDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEc
Confidence 333444443211 0 0113568899999862 1 47778888 999999998
Q ss_pred CCCHHH-------------HHHHHHH------HhhcC---CCCCccC----------------HHHHHhhCCCCcHHHHH
Q 003619 602 APNAKG-------------RTEILKI------HASKV---KMSDSVD----------------LSSYAKNLPGWTGARLA 643 (807)
Q Consensus 602 lPd~ee-------------R~eILk~------~L~~~---~l~~dvd----------------L~~LA~~T~GfSgaDL~ 643 (807)
.++.++ |.++.+. .++.. .+...+. +-.-+....++|.+...
T Consensus 390 ~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~ 469 (499)
T TIGR00368 390 LLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATH 469 (499)
T ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHH
Confidence 765432 2333322 11111 1111111 11112223468999999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 644 QLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 644 ~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.+++-|...|..++.+.|+.+|+.+|+.
T Consensus 470 rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 470 RILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999999999999975
No 151
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.19 E-value=8.1e-10 Score=115.16 Aligned_cols=196 Identities=22% Similarity=0.340 Sum_probs=135.7
Q ss_pred cCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 416 VDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 416 ~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
++....+.+.+|+|++.+++.|.+-...+.. ..+..+|||+|..|||||+|+||+-++. +..++.++-.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 3455679999999999999999765554322 2456689999999999999999998766 6778999887
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhC-CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--CCC
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVN-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--DTG 569 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~-~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~--~~~ 569 (807)
++.. +-.+++..+.. ..-|||.|++--= +.......|-..|||- ..+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe---------------------~gd~~yK~LKs~LeG~ve~rP 172 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSFE---------------------EGDDAYKALKSALEGGVEGRP 172 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCCC---------------------CCchHHHHHHHHhcCCcccCC
Confidence 7644 44555555443 3459999987420 0112233444455654 346
Q ss_pred CceEEEeccCccCCCCccc--------------------CCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCcc-CH-
Q 003619 570 KGVIFLAATNRRDLLDPAL--------------------LRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSV-DL- 627 (807)
Q Consensus 570 ~~VIVIAATN~pd~LDpAL--------------------lRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dv-dL- 627 (807)
.||++.||+|+...|+... --+.||...+.|.+++.++-..|+.+++++.+++-+. .+
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~ 252 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELH 252 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7899999999877654221 1124999999999999999999999999888776432 12
Q ss_pred ---HHHHhhCCCCcHHHHHHHHHHH
Q 003619 628 ---SSYAKNLPGWTGARLAQLVQEA 649 (807)
Q Consensus 628 ---~~LA~~T~GfSgaDL~~Lv~eA 649 (807)
.+.|....|-||+-..+.++..
T Consensus 253 ~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 253 AEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHHHHhcCCCccHhHHHHHHHH
Confidence 1223444456676666665543
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.18 E-value=4.9e-10 Score=136.95 Aligned_cols=198 Identities=22% Similarity=0.262 Sum_probs=126.0
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH---
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPH-GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV--- 497 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~-gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~--- 497 (807)
+.|+|++++++.+.+.+...+..-.+ -..|. .+||+||||||||.+|+++|..+ ...++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46889999999988887653211000 02244 48999999999999999999988 458899999887653
Q ss_pred ---------HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC-
Q 003619 498 ---------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD- 567 (807)
Q Consensus 498 ---------~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~- 567 (807)
|+|..... .+.+..+.+.++||+|||||...+. ..+.|++.+|.-.
T Consensus 642 ~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~~----------------------v~~~Llq~ld~g~l 697 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHPD----------------------VLELFYQVFDKGVM 697 (852)
T ss_pred ccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCHH----------------------HHHHHHHHhhccee
Confidence 22322211 1233445577799999999874322 2334444443211
Q ss_pred --------CCCceEEEeccCccC-----------------------------CCCcccCCCccccEEEeccCCCHHHHHH
Q 003619 568 --------TGKGVIFLAATNRRD-----------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTE 610 (807)
Q Consensus 568 --------~~~~VIVIAATN~pd-----------------------------~LDpALlRpGRFdr~I~I~lPd~eeR~e 610 (807)
.-.+.++|.|||... .+.|+++. |++ .|.|.+.+.++..+
T Consensus 698 ~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~ 774 (852)
T TIGR03345 698 EDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAA 774 (852)
T ss_pred ecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHH
Confidence 114678888988521 13455666 887 88999999999999
Q ss_pred HHHHHhhcC--------CCCCccC---HHHHHhhCCC--CcHHHHHHHHHHHHHHH
Q 003619 611 ILKIHASKV--------KMSDSVD---LSSYAKNLPG--WTGARLAQLVQEAALVA 653 (807)
Q Consensus 611 ILk~~L~~~--------~l~~dvd---L~~LA~~T~G--fSgaDL~~Lv~eAal~A 653 (807)
|+...+... ++.-.++ ++.|+....+ +-.+.|+++++.-...+
T Consensus 775 Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 775 IVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 998766442 2221122 5556665432 45677777776654433
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1e-10 Score=139.12 Aligned_cols=125 Identities=33% Similarity=0.448 Sum_probs=91.0
Q ss_pred CcccccHHHHHHHHHHHHH----hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeCchhHHH
Q 003619 425 SDVAGIDEAVEELQELVRY----LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEV 497 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~----L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~sel~~~ 497 (807)
+.|+|++++...+.+.+.. +.+|. +|-..+||.||+|+|||.||++||..+. ..++.+++|++.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4689999999999888876 44443 3445788999999999999999999995 89999999999875
Q ss_pred ------------HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC
Q 003619 498 ------------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 565 (807)
Q Consensus 498 ------------~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg 565 (807)
|+|..+. -.+-+..+.+..|||+||||+.-.+ ..+|-||+.||.
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp----------------------dV~nilLQVlDd 619 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP----------------------DVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH----------------------HHHHHHHHHhcC
Confidence 3443332 1233344556678999999998432 356677777763
Q ss_pred CC---C------CCceEEEeccCc
Q 003619 566 FD---T------GKGVIFLAATNR 580 (807)
Q Consensus 566 ~~---~------~~~VIVIAATN~ 580 (807)
-. . -++.++|+|||-
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred CeeecCCCCEEecceeEEEEeccc
Confidence 21 1 135789999985
No 154
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.17 E-value=8.9e-10 Score=116.19 Aligned_cols=192 Identities=14% Similarity=0.223 Sum_probs=118.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-CEE--E-EeC----chhHHHH---hhhh------h---HHHHHHH-HHHHhCC
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGV-PFY--Q-MAG----SEFVEVL---VGVG------S---ARIRDLF-KRAKVNK 517 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~-pfi--~-Is~----sel~~~~---vG~~------~---~~ir~lF-~~A~~~~ 517 (807)
..++|+||+|+|||++++.+++++.. .+. . +++ .++.... .|.. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 222 1 111 1222111 1111 0 1122212 2233566
Q ss_pred CcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE--EEeccCccCCCC-c---ccCCC
Q 003619 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI--FLAATNRRDLLD-P---ALLRP 591 (807)
Q Consensus 518 PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI--VIAATN~pd~LD-p---ALlRp 591 (807)
+.+|+|||+|.+... ....+..+... .. .....+. +++.....+.+. + .+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------------~~~~l~~l~~~-~~-~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~- 181 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------------LLEELRMLSNF-QT-DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ- 181 (269)
T ss_pred CeEEEEECcccCCHH-------------------HHHHHHHHhCc-cc-CCCCeEEEEEcCCHHHHHHHcCchhHHHHh-
Confidence 789999999986422 11122222221 11 1222232 223222222221 1 2334
Q ss_pred ccccEEEeccCCCHHHHHHHHHHHhhcCCCC-----CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003619 592 GRFDRKIRIRAPNAKGRTEILKIHASKVKMS-----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (807)
Q Consensus 592 GRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-----~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl 666 (807)
|+...+++++.+.++..+++...+...+.. .+..+..+++.+.|. ++.|..+++.+...|..++...|+.+++
T Consensus 182 -r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v 259 (269)
T TIGR03015 182 -RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEV 259 (269)
T ss_pred -heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 777789999999999999999888654321 223477788889885 6779999999999999999999999999
Q ss_pred HHHHHHHh
Q 003619 667 DDAVDRLT 674 (807)
Q Consensus 667 ~~Al~rv~ 674 (807)
..++..+.
T Consensus 260 ~~~~~~~~ 267 (269)
T TIGR03015 260 REVIAEID 267 (269)
T ss_pred HHHHHHhh
Confidence 99998753
No 155
>PHA02244 ATPase-like protein
Probab=99.17 E-value=6.9e-10 Score=123.06 Aligned_cols=125 Identities=27% Similarity=0.308 Sum_probs=81.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhh---hhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG---VGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQ 534 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG---~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~ 534 (807)
+.+|||+||||||||++|+++|..++.||+.++...-.....| ....-...-|-.|. ...++|+|||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~-- 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE-- 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH--
Confidence 3479999999999999999999999999999984310011111 11111111233332 34679999999986533
Q ss_pred CcccCcchhhhhhhhHHHHHHHHHHHHh-----hcC-CCCCCceEEEeccCcc-----------CCCCcccCCCccccEE
Q 003619 535 GIFKDTTDHLYNAATQERETTLNQLLIE-----LDG-FDTGKGVIFLAATNRR-----------DLLDPALLRPGRFDRK 597 (807)
Q Consensus 535 ~~~~~~~d~~~~~~~~e~~~tLn~LL~e-----Ldg-~~~~~~VIVIAATN~p-----------d~LDpALlRpGRFdr~ 597 (807)
....++.++.. .++ .....++.+|+|+|.+ ..+++++++ ||- .
T Consensus 196 -----------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~ 255 (383)
T PHA02244 196 -----------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-P 255 (383)
T ss_pred -----------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-E
Confidence 22334444432 111 1223578999999973 468999998 995 7
Q ss_pred EeccCCCH
Q 003619 598 IRIRAPNA 605 (807)
Q Consensus 598 I~I~lPd~ 605 (807)
|+++.|+.
T Consensus 256 I~~dyp~~ 263 (383)
T PHA02244 256 IEFDYDEK 263 (383)
T ss_pred eeCCCCcH
Confidence 89999884
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.17 E-value=8.6e-10 Score=135.15 Aligned_cols=203 Identities=24% Similarity=0.307 Sum_probs=129.4
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH----
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 497 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~---- 497 (807)
+.|+|++++++.+.+.+......-. -..+|...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4689999999999888776321100 001344569999999999999999999976 578999999887542
Q ss_pred -HhhhhhH-----HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC--C--
Q 003619 498 -LVGVGSA-----RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF--D-- 567 (807)
Q Consensus 498 -~vG~~~~-----~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~--~-- 567 (807)
+.|.... ....+....+....+||+||||+.+.+. . .+.|++.++.- .
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------------v---~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------------V---FNVLLQVLDDGRLTDG 699 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------------H---HHHHHHHHhcCceecC
Confidence 2221100 0112333334455679999999975432 2 23444444311 0
Q ss_pred -----CCCceEEEeccCccCC-------------------------CCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 568 -----TGKGVIFLAATNRRDL-------------------------LDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 568 -----~~~~VIVIAATN~pd~-------------------------LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
.-.+.+||+|||.... +.|.|+. |+|.++.+.+++.++..+|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 1245788999997221 3355665 9999999999999999999876654
Q ss_pred c-------CCCCCccC---HHHHHhhC--CCCcHHHHHHHHHHHHHHHH
Q 003619 618 K-------VKMSDSVD---LSSYAKNL--PGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 618 ~-------~~l~~dvd---L~~LA~~T--~GfSgaDL~~Lv~eAal~A~ 654 (807)
. .++...++ ++.|++.. ..+..+.|+++++.......
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 2 11111122 55566652 24567888888887765543
No 157
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.17 E-value=1.2e-09 Score=117.96 Aligned_cols=217 Identities=18% Similarity=0.251 Sum_probs=136.4
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCch--
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE-- 493 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~se-- 493 (807)
+.-+|+..+++.|..+-+.+..|.. ....++||+|++|.|||++++.+++.. .+|++.+.+..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 3457999998888888777777753 334579999999999999999998743 36888886532
Q ss_pred ----hHHHHh---hh-------hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHH
Q 003619 494 ----FVEVLV---GV-------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (807)
Q Consensus 494 ----l~~~~v---G~-------~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~L 559 (807)
|..... |. ............+...+.+|+|||+|.+..... ......+ .+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~---------------~~qr~~L-n~ 171 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY---------------RKQREFL-NA 171 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH---------------HHHHHHH-HH
Confidence 222211 10 112222334555667888999999999764321 1112222 22
Q ss_pred HHhhcCCCCCCceEEEeccCccC--CCCcccCCCccccEEEeccCCC-HHHHHHHHHHHhhcCCCCC--ccC----HHHH
Q 003619 560 LIELDGFDTGKGVIFLAATNRRD--LLDPALLRPGRFDRKIRIRAPN-AKGRTEILKIHASKVKMSD--SVD----LSSY 630 (807)
Q Consensus 560 L~eLdg~~~~~~VIVIAATN~pd--~LDpALlRpGRFdr~I~I~lPd-~eeR~eILk~~L~~~~l~~--dvd----L~~L 630 (807)
|..+. ..-.-.++.+|+..-.. .-|+.+.+ ||+ .+.++... .++...++..+-..+++.. ... ...+
T Consensus 172 LK~L~-NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i 247 (302)
T PF05621_consen 172 LKFLG-NELQIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRI 247 (302)
T ss_pred HHHHh-hccCCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 23321 11112344454432222 24777777 886 44556543 3445667776666555542 222 2455
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 631 AKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 631 A~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
-..+.|. -+++.++++.|+..|++.|.+.||.+.++.
T Consensus 248 ~~~s~G~-iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 248 HERSEGL-IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 6667775 559999999999999999999999998876
No 158
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=8.1e-10 Score=128.67 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=137.5
Q ss_pred ccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhh----h-------------------cCCCCCceEEEEcCC
Q 003619 411 KAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFD----K-------------------MGIKPPHGVLLEGPP 467 (807)
Q Consensus 411 ~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~----~-------------------lGl~~p~gVLL~GPP 467 (807)
..+.++++..+-.|.|+.|-+.+-..+..++..+. +-.|. + .+-++.+-+||+|||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD-~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gpp 335 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWD-PCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPP 335 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhc-HHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCC
Confidence 44578889999999999999988776665555321 11111 1 112223458899999
Q ss_pred CChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHH--------hCCCcEEEeccchhhhhhhcCcccC
Q 003619 468 GCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAK--------VNKPSVIFIDEIDALATRRQGIFKD 539 (807)
Q Consensus 468 GTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~--------~~~PsILfIDEID~L~~~r~~~~~~ 539 (807)
|.|||+||+.+|+.+|..++.+|+++-.. ...++..+..|. ...|..|+|||||--..
T Consensus 336 GlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-------- 401 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-------- 401 (877)
T ss_pred CCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH--------
Confidence 99999999999999999999999987432 222333333331 25688999999995221
Q ss_pred cchhhhhhhhHHHHHHHHHHHHh----hcCCCCC------------CceEEEeccCccCCCCcccCCCccccEEEeccCC
Q 003619 540 TTDHLYNAATQERETTLNQLLIE----LDGFDTG------------KGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAP 603 (807)
Q Consensus 540 ~~d~~~~~~~~e~~~tLn~LL~e----Ldg~~~~------------~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lP 603 (807)
....++..++.. ..|-... -.-.|||.||.. .-|+|+.---|...|+|.+|
T Consensus 402 -----------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 402 -----------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred -----------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 112222233221 1111110 013577778853 44676533257889999999
Q ss_pred CHHHHHHHHHHHhhcCCCCCcc-CHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhC
Q 003619 604 NAKGRTEILKIHASKVKMSDSV-DLSSYAKNLPGWTGARLAQLVQEAALVAVRKG 657 (807)
Q Consensus 604 d~eeR~eILk~~L~~~~l~~dv-dL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~ 657 (807)
...-..+-|+......++..+. .+..++..+.+ ||++++|.....+....
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVD 519 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcc
Confidence 9888777777777665554322 25666666554 99999999988886543
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.16 E-value=6.3e-10 Score=127.09 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=127.2
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCc-hhHHHHhhhh
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS-EFVEVLVGVG 502 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~s-el~~~~vG~~ 502 (807)
.|+|.+++++.+...+ -...++||.||||||||++|++++...+. +|....+. .......|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 4678888776664332 23458999999999999999999997643 55555443 1122333321
Q ss_pred -hHHH--HHHHHHHHhC---CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC-C--------C
Q 003619 503 -SARI--RDLFKRAKVN---KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG-F--------D 567 (807)
Q Consensus 503 -~~~i--r~lF~~A~~~---~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg-~--------~ 567 (807)
.... ...|...... ...+||+|||..+.++ +.+.||..|+. . .
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~----------------------~QsaLLeam~Er~~t~g~~~~~ 144 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA----------------------ILNTLLTAINERRFRNGAHEEK 144 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCCHH----------------------HHHHHHHHHHhCeEecCCeEEe
Confidence 1111 1223222111 2349999999875433 23445554421 1 1
Q ss_pred CCCceEEEeccCccC---CCCcccCCCccccEEEeccCCC-HHHHHHHHHHHhhc--CCCC--C---------------c
Q 003619 568 TGKGVIFLAATNRRD---LLDPALLRPGRFDRKIRIRAPN-AKGRTEILKIHASK--VKMS--D---------------S 624 (807)
Q Consensus 568 ~~~~VIVIAATN~pd---~LDpALlRpGRFdr~I~I~lPd-~eeR~eILk~~L~~--~~l~--~---------------d 624 (807)
-+.. ++++|||... ...+++.. ||-..+.+++|+ .++..++|...... .... . .
T Consensus 145 lp~r-fiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~ 221 (498)
T PRK13531 145 IPMR-LLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGK 221 (498)
T ss_pred CCCc-EEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcc
Confidence 1122 4444556422 13348888 998899999997 45657788653221 1010 0 0
Q ss_pred cC--------HHHHHhh---C---CCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCC
Q 003619 625 VD--------LSSYAKN---L---PGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 625 vd--------L~~LA~~---T---~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~ 677 (807)
+. +..+... + ...|++-...+++-|...|...|++.|+.+|+. .+..+.++.
T Consensus 222 V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 222 ITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred eeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 00 2233321 2 237899999999999999999999999999999 777777754
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.15 E-value=1e-09 Score=134.45 Aligned_cols=198 Identities=24% Similarity=0.343 Sum_probs=123.8
Q ss_pred cCcccccHHHHHHHHHHHHHhc----ChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 424 FSDVAGIDEAVEELQELVRYLK----NPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 424 F~dVvG~devkeeL~eiV~~L~----~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
.+.|+|++++++.+.+.+.... +|. +|...+||+||+|||||++|+++|+.+ +.+++.++|+++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 4568999999999988887643 221 222468999999999999999999876 56899999988754
Q ss_pred H-----HhhhhhH----HHHHHHHHH-HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC
Q 003619 497 V-----LVGVGSA----RIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF 566 (807)
Q Consensus 497 ~-----~vG~~~~----~ir~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~ 566 (807)
. +.|.... .-...+..+ +....+||+|||++.+.+. . .+.|++.++.-
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~-------------------v---~~~Ll~ile~g 697 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD-------------------V---FNILLQVLDDG 697 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH-------------------H---HHHHHHHHhhC
Confidence 3 1221100 001122333 3344489999999975432 2 23344433311
Q ss_pred ---------CCCCceEEEeccCccC-------------------------CCCcccCCCccccEEEeccCCCHHHHHHHH
Q 003619 567 ---------DTGKGVIFLAATNRRD-------------------------LLDPALLRPGRFDRKIRIRAPNAKGRTEIL 612 (807)
Q Consensus 567 ---------~~~~~VIVIAATN~pd-------------------------~LDpALlRpGRFdr~I~I~lPd~eeR~eIL 612 (807)
..-.+.++|+|||... .+.|+++. |+|..+.+.+++.+...+|+
T Consensus 698 ~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv 775 (857)
T PRK10865 698 RLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIA 775 (857)
T ss_pred ceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHH
Confidence 0123467888998721 24466776 99999999999999999998
Q ss_pred HHHhhcC-------CCCCccC---HHHHHhhC--CCCcHHHHHHHHHHHHHH
Q 003619 613 KIHASKV-------KMSDSVD---LSSYAKNL--PGWTGARLAQLVQEAALV 652 (807)
Q Consensus 613 k~~L~~~-------~l~~dvd---L~~LA~~T--~GfSgaDL~~Lv~eAal~ 652 (807)
+.++... ++.-.++ ++.++... ..+-.+.|+++++.-...
T Consensus 776 ~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~ 827 (857)
T PRK10865 776 QIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIEN 827 (857)
T ss_pred HHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHH
Confidence 8776542 2221222 44444431 123356777776665433
No 161
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.14 E-value=2.7e-10 Score=132.43 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=129.3
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHH
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL 498 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~ 498 (807)
.+|++++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|+++.+.. +.||+.++|..+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 6789999999999988888776432 23489999999999999999998654 6799999998764432
Q ss_pred -----hhhhh--------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-
Q 003619 499 -----VGVGS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD- 564 (807)
Q Consensus 499 -----vG~~~--------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd- 564 (807)
.|... .....+|+.|. ...||||||+.|... .+..+..+|++-.
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------------~Q~~Ll~~L~~~~~ 336 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------------LQTRLLRVLEEREV 336 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------------HHHHHHHHHhcCcE
Confidence 22110 01123444433 458999999997643 2233344444321
Q ss_pred -CCC----CCCceEEEeccCccCC--CCcccCCCccccE--EEeccCCCHHHHHH----HHHHHhhcC----CCCCccC-
Q 003619 565 -GFD----TGKGVIFLAATNRRDL--LDPALLRPGRFDR--KIRIRAPNAKGRTE----ILKIHASKV----KMSDSVD- 626 (807)
Q Consensus 565 -g~~----~~~~VIVIAATN~pd~--LDpALlRpGRFdr--~I~I~lPd~eeR~e----ILk~~L~~~----~l~~dvd- 626 (807)
... .+-++.+|++||..-. +.....++.-|.+ .+.+..|+..+|.+ ++.+++... ...-+.+
T Consensus 337 ~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a 416 (526)
T TIGR02329 337 VRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAA 416 (526)
T ss_pred EecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 111 1224678888876432 2222222111111 35667788777765 344554432 1111111
Q ss_pred HHH-------HHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 627 LSS-------YAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 627 L~~-------LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+.. +.+..---+.++|++++++++..+.......|+.+++....
T Consensus 417 ~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 417 AQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 222 33332223789999999999877643234578888875443
No 162
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.13 E-value=2.1e-10 Score=133.54 Aligned_cols=210 Identities=23% Similarity=0.325 Sum_probs=127.5
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCEEEEe
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE-----------AGVPFYQMA 490 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e-----------lg~pfi~Is 490 (807)
.+|++++|.+...+.+++.+..+.. .+.+|||+|++||||+++|+++.+. .+.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 5789999999999998888776432 2348999999999999999999876 467999999
Q ss_pred CchhHHHH-----hhhhh--------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHH
Q 003619 491 GSEFVEVL-----VGVGS--------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (807)
Q Consensus 491 ~sel~~~~-----vG~~~--------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn 557 (807)
|+.+.+.. .|... .....+|+.|. ...||||||+.+... .+..+.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------------~Q~kLl 343 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------------LQTRLL 343 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------------HHHHHH
Confidence 98764432 22110 01123444433 458999999997643 223334
Q ss_pred HHHHhhc--CCC----CCCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH----HHHHHhhc--
Q 003619 558 QLLIELD--GFD----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASK-- 618 (807)
Q Consensus 558 ~LL~eLd--g~~----~~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e----ILk~~L~~-- 618 (807)
.+|++-. ... .+-++.+|++||..-. .+...|+|.. .+.+..|+..+|.+ +++++++.
T Consensus 344 ~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~---~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~ 420 (538)
T PRK15424 344 RVLEEKEVTRVGGHQPVPVDVRVISATHCDLE---EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSL 420 (538)
T ss_pred hhhhcCeEEecCCCceeccceEEEEecCCCHH---HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHH
Confidence 4443321 111 1234688999886421 2222333332 45677788877765 34455543
Q ss_pred --CCCCCccC-H-------HHHHhh-CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003619 619 --VKMSDSVD-L-------SSYAKN-LPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (807)
Q Consensus 619 --~~l~~dvd-L-------~~LA~~-T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~ 667 (807)
.+..-..+ + ..+... .+| +.++|++++++++..+.......|+.+++.
T Consensus 421 ~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 421 AALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 22211111 1 222222 334 789999999999887543323456666653
No 163
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.13 E-value=2.7e-10 Score=132.74 Aligned_cols=212 Identities=22% Similarity=0.261 Sum_probs=126.7
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhH
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV 495 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~ 495 (807)
.+..+|++++|.+...+++.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3457899999999999888887776542 34489999999999999999998864 6799999998764
Q ss_pred HHHh-----hhhhH-------HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 496 EVLV-----GVGSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 496 ~~~v-----G~~~~-------~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
+... |.... .....|+. ....+|||||||.+.... +..+..++..-
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~~-------------------Q~~Ll~~l~~~ 317 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPAF-------------------QAKLLRVLQEG 317 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHHH-------------------HHHHHHHHhcC
Confidence 4321 11100 00111222 235699999999976432 22333333321
Q ss_pred c--CCCC----CCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHH----HHHHHHhhcC----CCC
Q 003619 564 D--GFDT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRT----EILKIHASKV----KMS 622 (807)
Q Consensus 564 d--g~~~----~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~----eILk~~L~~~----~l~ 622 (807)
. .... ..++.+|++|+..-. .+...|+|.. .+.+..|+..+|. .++.+++... +..
T Consensus 318 ~~~~~~~~~~~~~~~riI~~s~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~ 394 (534)
T TIGR01817 318 EFERVGGNRTLKVDVRLVAATNRDLE---EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP 394 (534)
T ss_pred cEEECCCCceEeecEEEEEeCCCCHH---HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC
Confidence 1 0011 124788888875321 1112233321 3445556655553 3445555432 111
Q ss_pred CccC---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 003619 623 DSVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDD 668 (807)
Q Consensus 623 ~dvd---L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~ 668 (807)
..++ +..+....---+.++|++++++|+..+ ....|+.+|+..
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~~ 440 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFSC 440 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCch
Confidence 1222 445555543337899999999998765 446788888753
No 164
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.12 E-value=6e-10 Score=129.37 Aligned_cols=222 Identities=18% Similarity=0.222 Sum_probs=131.5
Q ss_pred cccccHHHHHHHHHHHHHhcCh--hhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE----eCchhHHHHh
Q 003619 426 DVAGIDEAVEELQELVRYLKNP--ELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM----AGSEFVEVLV 499 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~p--e~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I----s~sel~~~~v 499 (807)
+|.|++.+|..+.-. .+... ..-....++...+|||+|+||||||++|+++++.+....+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~--l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLL--LFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHH--HhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 588999887666422 22211 111111233445799999999999999999999775432221 2222211000
Q ss_pred hh---hhHHH-HHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh------cCC--C
Q 003619 500 GV---GSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL------DGF--D 567 (807)
Q Consensus 500 G~---~~~~i-r~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL------dg~--~ 567 (807)
.. +...+ ...+. .....+++|||+|.+.... +..+.+.+.+- .|. .
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~~~-------------------q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKMDDSD-------------------RTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhCCHHH-------------------HHHHHHHHhcCEEEEEeCCEEEE
Confidence 00 00000 00111 1234599999999975432 22333333220 011 1
Q ss_pred CCCceEEEeccCccC-------------CCCcccCCCccccEEEec-cCCCHHHHHHHHHHHhhcCC-------------
Q 003619 568 TGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVK------------- 620 (807)
Q Consensus 568 ~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I~I-~lPd~eeR~eILk~~L~~~~------------- 620 (807)
-+.++.||||+|..+ .|++++++ |||..+.+ +.|+.+...+|.++.+....
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~ 417 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVP 417 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCcccccccccc
Confidence 134678999999753 58999999 99986544 68899988888877442110
Q ss_pred ----------------CCCccC---HHHH---Hh--h----------CCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003619 621 ----------------MSDSVD---LSSY---AK--N----------LPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (807)
Q Consensus 621 ----------------l~~dvd---L~~L---A~--~----------T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl 666 (807)
+.+.+. .+.+ .. + ..+.|++.++.+++-|...|..+.++.|+.+|+
T Consensus 418 ~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv 497 (509)
T smart00350 418 ISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADV 497 (509)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 000011 1111 00 1 125689999999999999999999999999999
Q ss_pred HHHHHHH
Q 003619 667 DDAVDRL 673 (807)
Q Consensus 667 ~~Al~rv 673 (807)
.+|++-+
T Consensus 498 ~~ai~l~ 504 (509)
T smart00350 498 EEAIRLL 504 (509)
T ss_pred HHHHHHH
Confidence 9998754
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.12 E-value=1.7e-09 Score=132.14 Aligned_cols=167 Identities=26% Similarity=0.323 Sum_probs=110.2
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH----
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV---- 497 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~---- 497 (807)
+.|+|++++++.+.+.+...+..-. -.-+|...+||+||+|||||++|+++|+.+ ..+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~---~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK---NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 4688999999999888765221000 001233458999999999999999999987 468999998887432
Q ss_pred -Hhhhhh-----HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC----
Q 003619 498 -LVGVGS-----ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD---- 567 (807)
Q Consensus 498 -~vG~~~-----~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~---- 567 (807)
+.|... .....+.+..+....+||+|||+|.+.+. ..+.|++.++.-.
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~----------------------v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPD----------------------IFNLLLQILDDGRLTDS 643 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHH----------------------HHHHHHHHhccCceecC
Confidence 222110 11123344445555689999999985432 2344555555310
Q ss_pred -----CCCceEEEeccCccCC-------------------------------------CCcccCCCccccEEEeccCCCH
Q 003619 568 -----TGKGVIFLAATNRRDL-------------------------------------LDPALLRPGRFDRKIRIRAPNA 605 (807)
Q Consensus 568 -----~~~~VIVIAATN~pd~-------------------------------------LDpALlRpGRFdr~I~I~lPd~ 605 (807)
.-.+.++|+|||.... +.|.++. |+|.+|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 1246889999885321 1234455 8999999999999
Q ss_pred HHHHHHHHHHhhc
Q 003619 606 KGRTEILKIHASK 618 (807)
Q Consensus 606 eeR~eILk~~L~~ 618 (807)
++..+|++..+..
T Consensus 722 ~~l~~Iv~~~l~~ 734 (821)
T CHL00095 722 NDVWEIAEIMLKN 734 (821)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 166
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.11 E-value=4.3e-10 Score=102.91 Aligned_cols=128 Identities=34% Similarity=0.487 Sum_probs=81.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEeCchhHHHH--------------hhhhhHHHHHHHHHHHhCCCcE
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEFVEVL--------------VGVGSARIRDLFKRAKVNKPSV 520 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~p---fi~Is~sel~~~~--------------vG~~~~~ir~lF~~A~~~~PsI 520 (807)
+..++|+||||||||++++.+|..+..+ ++.++++...... ........+..+..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 8888877543221 1234556778888888877899
Q ss_pred EEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc-cCCCCcccCCCccccEEEe
Q 003619 521 IFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIR 599 (807)
Q Consensus 521 LfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~-pd~LDpALlRpGRFdr~I~ 599 (807)
|+|||++.+....... ....... ...........+..+|+++|. ....+..+.+ |++..+.
T Consensus 82 iiiDei~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 143 (148)
T smart00382 82 LILDEITSLLDAEQEA---------------LLLLLEE-LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIV 143 (148)
T ss_pred EEEECCcccCCHHHHH---------------HHHhhhh-hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEE
Confidence 9999999987543210 0000000 000011122345678888886 2333444444 8888887
Q ss_pred ccCC
Q 003619 600 IRAP 603 (807)
Q Consensus 600 I~lP 603 (807)
+..+
T Consensus 144 ~~~~ 147 (148)
T smart00382 144 LLLI 147 (148)
T ss_pred ecCC
Confidence 7654
No 167
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.7e-09 Score=120.07 Aligned_cols=191 Identities=19% Similarity=0.213 Sum_probs=123.2
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEE--
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQM-- 489 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-------pfi~I-- 489 (807)
..+..+++|+|++++++.|...+.. .+.|..+||+||+|+|||++|+.+|+.+.. |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4567899999999999999877642 245668999999999999999999998744 11111
Q ss_pred --eCchhHHH-------H--h-------------hhhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcccCcc
Q 003619 490 --AGSEFVEV-------L--V-------------GVGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIFKDTT 541 (807)
Q Consensus 490 --s~sel~~~-------~--v-------------G~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~~~~~ 541 (807)
.|...... + + .-+...++.+.+... .....|++|||+|.+...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 11110000 0 0 001233444433322 234569999999997532
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCC
Q 003619 542 DHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKM 621 (807)
Q Consensus 542 d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l 621 (807)
..|.||..++.. +.+.++|..|+.++.+.|.+++ |+ ..+.+++|+.++..++|+.......+
T Consensus 157 -------------aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~ 218 (351)
T PRK09112 157 -------------AANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS 218 (351)
T ss_pred -------------HHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC
Confidence 246677777753 3445555556778888899987 76 69999999999999999874322221
Q ss_pred CCccCHHHHHhhCCCCcHHHHHHHHHHH
Q 003619 622 SDSVDLSSYAKNLPGWTGARLAQLVQEA 649 (807)
Q Consensus 622 ~~dvdL~~LA~~T~GfSgaDL~~Lv~eA 649 (807)
+ +..+..+++.+.| +++...++++..
T Consensus 219 ~-~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 219 D-GEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred C-HHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 1 2225566776666 666666665543
No 168
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=119.10 Aligned_cols=137 Identities=30% Similarity=0.390 Sum_probs=88.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH--HhhhhhHHHH----HHHHHH--HhCCC--cEEEeccch
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGVGSARIR----DLFKRA--KVNKP--SVIFIDEID 527 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~--~vG~~~~~ir----~lF~~A--~~~~P--sILfIDEID 527 (807)
.+++||.||||||||++|+++|..++.+|+.++|...... ..|...-..+ ..|... ..... +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 4579999999999999999999999999999999754432 2222111110 000000 00011 499999999
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc------C-CCCCCceEEEeccC-----ccCCCCcccCCCcccc
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD------G-FDTGKGVIFLAATN-----RRDLLDPALLRPGRFD 595 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd------g-~~~~~~VIVIAATN-----~pd~LDpALlRpGRFd 595 (807)
...+ ..+..+.+.+.+.. . +.-+..++||+|.| ....+++++++ ||.
T Consensus 123 ra~p-------------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 123 RAPP-------------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred cCCH-------------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 8543 23344444444411 1 33446789999999 34468999999 998
Q ss_pred EEEeccCCC-HHHHHHHHHHH
Q 003619 596 RKIRIRAPN-AKGRTEILKIH 615 (807)
Q Consensus 596 r~I~I~lPd-~eeR~eILk~~ 615 (807)
..++++.|+ .++...++...
T Consensus 182 ~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 182 LRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEEecCCCCchHHHHHHHHhC
Confidence 999999994 44444444433
No 169
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.09 E-value=1.3e-09 Score=129.68 Aligned_cols=213 Identities=20% Similarity=0.266 Sum_probs=129.1
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH-
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE- 496 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~- 496 (807)
..+|++++|.+...+++.+.+..+.. ...+|||+|++||||+++|+++.+.. +.||+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 45799999999988888777665432 23479999999999999999998765 57999999987643
Q ss_pred ----HHhhhh----hHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC--C
Q 003619 497 ----VLVGVG----SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG--F 566 (807)
Q Consensus 497 ----~~vG~~----~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg--~ 566 (807)
.+.|.. .......|+. ....+||||||+.+.... +..+..+|++-.- .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~~-------------------Q~~Ll~~l~~~~~~~~ 448 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPEL-------------------QSALLQVLKTGVITRL 448 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHHH-------------------HHHHHHHHhcCcEEeC
Confidence 222311 0000112322 345699999999976432 2333344432110 1
Q ss_pred CC----CCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH----HHHHHhhcC----CCCCccC-
Q 003619 567 DT----GKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMSDSVD- 626 (807)
Q Consensus 567 ~~----~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e----ILk~~L~~~----~l~~dvd- 626 (807)
.. +-++.+|+|||..-. .+...|+|.. .+.+..|+..+|.+ ++++++... .....++
T Consensus 449 ~~~~~~~~~~riI~~t~~~l~---~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 449 DSRRLIPVDVRVIATTTADLA---MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDD 525 (638)
T ss_pred CCCceEEeeEEEEEeccCCHH---HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCH
Confidence 11 125778998886421 1222233321 56677788887754 334444322 1111122
Q ss_pred --HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 627 --LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 627 --L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
+..+.+..---+.++|+++++.|...+ ....|+.+|+...+.
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 445555543337899999999988665 445788888876653
No 170
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-09 Score=128.64 Aligned_cols=204 Identities=22% Similarity=0.296 Sum_probs=140.3
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMA 490 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is 490 (807)
.-+++-|+|.++.++++.+++.. +...+-+|+|+||+|||.++.-+|.+. +..++.++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 45788999999988777766543 122355999999999999999999864 45577788
Q ss_pred CchhHH--HHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC
Q 003619 491 GSEFVE--VLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT 568 (807)
Q Consensus 491 ~sel~~--~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~ 568 (807)
.+.++. .|.|+.+.+++.+++......+.||||||||.+-+....... .+| ....+.-.| .
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~D---------AaNiLKPaL-------A 296 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMD---------AANLLKPAL-------A 296 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccc---------hhhhhHHHH-------h
Confidence 777764 488999999999999999888899999999999765432111 111 111222222 2
Q ss_pred CCceEEEeccCccC-----CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-----HHHHHhhC----
Q 003619 569 GKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-----LSSYAKNL---- 634 (807)
Q Consensus 569 ~~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-----L~~LA~~T---- 634 (807)
+..+.+|+||+..+ .-|+||-| ||. .|.+..|+.++-..||+-.-........+. +...+..+
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 45578888887644 35999999 995 778999999999999986655433332221 33323222
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHh
Q 003619 635 -PGWTGARLAQLVQEAALVAVRK 656 (807)
Q Consensus 635 -~GfSgaDL~~Lv~eAal~A~rr 656 (807)
..+-|.-.-.++.+|+.....+
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhc
Confidence 2334445566778887665443
No 171
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=1.7e-09 Score=119.17 Aligned_cols=192 Identities=21% Similarity=0.223 Sum_probs=113.8
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh----
Q 003619 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV---- 499 (807)
Q Consensus 427 VvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v---- 499 (807)
++|.+...+.+.+.+..+.. ...+|||+|++||||+++|++|.... +.||+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 46778887777777666532 33489999999999999999997654 57999999986543221
Q ss_pred -hhhh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CC---
Q 003619 500 -GVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF--- 566 (807)
Q Consensus 500 -G~~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~--- 566 (807)
|... ......|+.| ...+|||||||.+... .+..+..+++.-. ..
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------------~Q~~Ll~~l~~~~~~~~g~~ 128 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------------VQEKLLRVIEYGEFERVGGS 128 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------------HHHHHHHHHHcCcEEecCCC
Confidence 1100 0111224333 3569999999997643 2233334443311 00
Q ss_pred -CCCCceEEEeccCccC-------CCCcccCCCccccEEEeccCCCHHHHHH----HHHHHhhc----CCCC--CccC--
Q 003619 567 -DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS--DSVD-- 626 (807)
Q Consensus 567 -~~~~~VIVIAATN~pd-------~LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~~----~~l~--~dvd-- 626 (807)
....++.+|++||..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++.. .+.. ..++
T Consensus 129 ~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 129 QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQ 205 (329)
T ss_pred ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHH
Confidence 1124578899988632 12333333 442 35667777777755 33444332 1211 1222
Q ss_pred -HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 627 -LSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 627 -L~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
+..+....---+.++|++++++|+..+
T Consensus 206 a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 206 AREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 444554442337899999999988766
No 172
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.07 E-value=8.5e-10 Score=128.08 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=125.6
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHH-
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL- 498 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~- 498 (807)
++.+++|.+...+.+.+.+..+.. .+.+|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 578899999999998888776532 34489999999999999999998864 6799999998765432
Q ss_pred ----hhhhh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--C
Q 003619 499 ----VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (807)
Q Consensus 499 ----vG~~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g 565 (807)
.|... ......|+. ....+|||||||.+.... +..+..+++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~~~-------------------Q~~Ll~~l~~~~~~~ 312 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPLAL-------------------QAKLLRVLQYGEIQR 312 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCHHH-------------------HHHHHHHHhcCCEee
Confidence 22110 001113433 335689999999986432 223333443211 1
Q ss_pred CC----CCCceEEEeccCccCC-------CCcccCCCccccEEEeccCCCHHHHHH----HHHHHhhcC----CC-CCcc
Q 003619 566 FD----TGKGVIFLAATNRRDL-------LDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KM-SDSV 625 (807)
Q Consensus 566 ~~----~~~~VIVIAATN~pd~-------LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~~~----~l-~~dv 625 (807)
.. ...++.+|++||..-. +.+.|.. |+. .+.+..|+..+|.+ +++++++.. +. ...+
T Consensus 313 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~ 389 (509)
T PRK05022 313 VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL 389 (509)
T ss_pred CCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 11 1235788999886421 2222222 221 45567788777755 333443321 11 1122
Q ss_pred C---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCC---ccCHHHHH
Q 003619 626 D---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHE---SILSSDMD 667 (807)
Q Consensus 626 d---L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~---~It~edl~ 667 (807)
+ +..+....---+.++|++++++|+..+...... .|+.+++.
T Consensus 390 s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 390 SPAAQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 2 444444433337899999999999887432111 45666554
No 173
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=4.2e-10 Score=125.97 Aligned_cols=200 Identities=25% Similarity=0.329 Sum_probs=123.4
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEeCchhH
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSEFV 495 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e----lg~pfi~Is~sel~ 495 (807)
....+++++|.+...+++++-+..+. +...+|||.|++||||+++|+++... .+.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34678999999998888877776522 33458999999999999999999642 46799999998876
Q ss_pred HHHhh-----h-------hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 496 EVLVG-----V-------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 496 ~~~vG-----~-------~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
+.... . ....-..+|+.|. ..+||||||+.+... .+..+-.+|++.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~-------------------~Q~kLl~~le~g 200 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE-------------------GQEKLLRVLEEG 200 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh-------------------HHHHHHHHHHcC
Confidence 54322 1 1222334555543 349999999997643 233344444442
Q ss_pred cC--C----CCCCceEEEeccCcc--CCCCc--ccCCCccccEEEeccCCCHHHHHH----HHHH----HhhcCCCCCcc
Q 003619 564 DG--F----DTGKGVIFLAATNRR--DLLDP--ALLRPGRFDRKIRIRAPNAKGRTE----ILKI----HASKVKMSDSV 625 (807)
Q Consensus 564 dg--~----~~~~~VIVIAATN~p--d~LDp--ALlRpGRFdr~I~I~lPd~eeR~e----ILk~----~L~~~~l~~dv 625 (807)
.- + ....+|.+|+|||.. +.+-. .+.+. |+ .+.|.+|+..+|+. ++++ +.++.+.....
T Consensus 201 ~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~ 277 (403)
T COG1221 201 EYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSV 277 (403)
T ss_pred ceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11 1 223568999999842 12222 33320 23 33455677766644 3333 33444444332
Q ss_pred CH----HHHHh-hCCCCcHHHHHHHHHHHHHHHHH
Q 003619 626 DL----SSYAK-NLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 626 dL----~~LA~-~T~GfSgaDL~~Lv~eAal~A~r 655 (807)
+. ..+-. ..+| +.++|+|++..++..+..
T Consensus 278 ~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 278 DSPEALRALLAYDWPG-NIRELKNLVERAVAQASG 311 (403)
T ss_pred CCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhcc
Confidence 22 22222 3455 789999999999988843
No 174
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=1.3e-09 Score=126.83 Aligned_cols=208 Identities=16% Similarity=0.244 Sum_probs=124.8
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 497 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~ 497 (807)
..+|++++|.+...+.+.+.+..+.. ...+|||+|++||||+++|+++.... +.||+.++|+.+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 46899999999988777766655432 23479999999999999999986644 579999999876543
Q ss_pred H-----hhhhh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-
Q 003619 498 L-----VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD- 564 (807)
Q Consensus 498 ~-----vG~~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd- 564 (807)
. .|... .....+|+.| ....|||||||.+... .+..+..+++.-.
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-------------------~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-------------------MQAKLLRFLNDGTF 327 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-------------------HHHHHHHHHhcCCc
Confidence 2 22111 0112234443 3458999999997643 2233344443311
Q ss_pred -CC----CCCCceEEEeccCccC-C------CCcccCCCccccEEEeccCCCHHHHHH----HHHHHhh----cCCCC-C
Q 003619 565 -GF----DTGKGVIFLAATNRRD-L------LDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHAS----KVKMS-D 623 (807)
Q Consensus 565 -g~----~~~~~VIVIAATN~pd-~------LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~----~~~l~-~ 623 (807)
.. ....++.||++|+.+- . +.+.|.. |+. .+.+..|+..+|.+ ++.+++. +.+.. .
T Consensus 328 ~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~ 404 (520)
T PRK10820 328 RRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRP 404 (520)
T ss_pred ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11 1123577888887642 1 2233333 433 36677777777764 2333332 22221 1
Q ss_pred ccC---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 003619 624 SVD---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDM 666 (807)
Q Consensus 624 dvd---L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl 666 (807)
.+. +..+....---+.++|++++.+|+..+ ....|+.+|+
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 222 344444422237899999999988765 4456888775
No 175
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.05 E-value=2.2e-09 Score=118.05 Aligned_cols=196 Identities=19% Similarity=0.184 Sum_probs=117.6
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH--
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-- 497 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~-- 497 (807)
.+++++|.+...+.+.+.+..+. +.+.+|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 46789999999888888777653 234489999999999999999997654 579999999876432
Q ss_pred ---Hhhhhh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-
Q 003619 498 ---LVGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF- 566 (807)
Q Consensus 498 ---~vG~~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~- 566 (807)
+.|... ......+.. ....+|||||||.+.... +..+..++..-...
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~~-------------------Q~~L~~~l~~~~~~~ 131 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMLV-------------------QEKLLRVIEYGELER 131 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHHH-------------------HHHHHHHHhcCcEEe
Confidence 222110 011122333 335689999999976432 22333344321100
Q ss_pred -----CCCCceEEEeccCccC-------CCCcccCCCccccEEEeccCCCHHHHHH----HHHHHhhc----CCCC--Cc
Q 003619 567 -----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASK----VKMS--DS 624 (807)
Q Consensus 567 -----~~~~~VIVIAATN~pd-------~LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~~----~~l~--~d 624 (807)
....++.+|++|+..- .+.+.|.. ||. .+.+..|+..+|.+ ++.+++.. .+.. ..
T Consensus 132 ~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ 208 (326)
T PRK11608 132 VGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPG 208 (326)
T ss_pred CCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 1113578888887631 23344444 442 34556677777655 44444432 2211 12
Q ss_pred cC---HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 625 VD---LSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 625 vd---L~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
++ +..+....---+.++|++++++|+..+
T Consensus 209 ~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 209 FTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred CCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 23 344444433337899999999988765
No 176
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.03 E-value=2.7e-09 Score=125.97 Aligned_cols=193 Identities=20% Similarity=0.230 Sum_probs=123.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhhHHHHHHHHHH---------HhCCCcEEEeccch
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRA---------KVNKPSVIFIDEID 527 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~sel~~~~vG~~~~~ir~lF~~A---------~~~~PsILfIDEID 527 (807)
.+|||.|+||||||++|+++++.+. .||+.+......+.+.|.. .+...+... ......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 4799999999999999999999774 4788887643334344431 011101000 01233599999999
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc------CC--CCCCceEEEeccCccC---CCCcccCCCccccE
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD------GF--DTGKGVIFLAATNRRD---LLDPALLRPGRFDR 596 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd------g~--~~~~~VIVIAATN~pd---~LDpALlRpGRFdr 596 (807)
.+.... +..+.+.+.+-. +. ..+.++.|||++|..+ .++++|+. ||+.
T Consensus 95 rl~~~~-------------------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l 153 (589)
T TIGR02031 95 LLDDGL-------------------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLAL 153 (589)
T ss_pred hCCHHH-------------------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccC
Confidence 976432 222333332211 11 1134688999999765 68889998 9999
Q ss_pred EEecc-CCCHHHHHHHHHHHhhcC-------------------------CCCCccCHHHHHhhC--CCCc-HHHHHHHHH
Q 003619 597 KIRIR-APNAKGRTEILKIHASKV-------------------------KMSDSVDLSSYAKNL--PGWT-GARLAQLVQ 647 (807)
Q Consensus 597 ~I~I~-lPd~eeR~eILk~~L~~~-------------------------~l~~dvdL~~LA~~T--~GfS-gaDL~~Lv~ 647 (807)
++.+. .|+.++|.+|++.++... .++.+ .+..++..+ .|.+ .+....+++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r 232 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVR 232 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHH
Confidence 88776 467788999887755211 11111 122222221 2333 556667889
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 003619 648 EAALVAVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 648 eAal~A~rr~~~~It~edl~~Al~rv~~ 675 (807)
-|...|..++++.|+.+|+..|+.-+..
T Consensus 233 ~ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 233 AAKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999887764
No 177
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.03 E-value=4.7e-09 Score=121.35 Aligned_cols=212 Identities=24% Similarity=0.296 Sum_probs=128.3
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG------------------ 483 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg------------------ 483 (807)
..|.++.|+..+++.+. +....+..++|+||||+|||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~--------------laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLE--------------ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhh--------------eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47889999887776653 2234556899999999999999999987431
Q ss_pred ----------CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHH
Q 003619 484 ----------VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (807)
Q Consensus 484 ----------~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~ 553 (807)
.||.....+.-...++|.+.......+..|.. .+|||||++.+... ..
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~~-------------------~~ 311 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFERR-------------------TL 311 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCHH-------------------HH
Confidence 11111111111122344332222344555443 49999999886432 22
Q ss_pred HHHHHHHHhhc----C----CCCCCceEEEeccCccC---------------------CCCcccCCCccccEEEeccCCC
Q 003619 554 TTLNQLLIELD----G----FDTGKGVIFLAATNRRD---------------------LLDPALLRPGRFDRKIRIRAPN 604 (807)
Q Consensus 554 ~tLn~LL~eLd----g----~~~~~~VIVIAATN~pd---------------------~LDpALlRpGRFdr~I~I~lPd 604 (807)
..+.+.+.+-. . ...+.++.+|+|+|... .++.++++ |||.++.++.|+
T Consensus 312 ~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~ 389 (506)
T PRK09862 312 DALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPP 389 (506)
T ss_pred HHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCC
Confidence 33333332211 0 01245689999999743 36778888 999999999875
Q ss_pred HHH----------HH----HHHHHHh----hcCCCCCccC----------------HHHHHhhCCCCcHHHHHHHHHHHH
Q 003619 605 AKG----------RT----EILKIHA----SKVKMSDSVD----------------LSSYAKNLPGWTGARLAQLVQEAA 650 (807)
Q Consensus 605 ~ee----------R~----eILk~~L----~~~~l~~dvd----------------L~~LA~~T~GfSgaDL~~Lv~eAa 650 (807)
.++ .. .+.+..- +...+...+. +-.-+....|.|.|....+++-|.
T Consensus 390 ~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvAR 469 (506)
T PRK09862 390 PGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVAR 469 (506)
T ss_pred HHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 321 11 1111000 0000011110 111122344789999999999999
Q ss_pred HHHHHhCCCccCHHHHHHHHH
Q 003619 651 LVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 651 l~A~rr~~~~It~edl~~Al~ 671 (807)
..|..++++.|+.+|+.+|+.
T Consensus 470 TiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 470 TIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHHHcCCCCCCHHHHHHHHH
Confidence 999999999999999999986
No 178
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=5.8e-09 Score=116.51 Aligned_cols=186 Identities=20% Similarity=0.211 Sum_probs=121.0
Q ss_pred CCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE------------
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF------------ 486 (807)
Q Consensus 419 ~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf------------ 486 (807)
..+.++++|+|++++++.|.+.+.. .+.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4567899999999999999877653 24566899999999999999999999662110
Q ss_pred -E--EEeCchh--H-----------HH---Hhh------hhhHHHHHHHHHHH----hCCCcEEEeccchhhhhhhcCcc
Q 003619 487 -Y--QMAGSEF--V-----------EV---LVG------VGSARIRDLFKRAK----VNKPSVIFIDEIDALATRRQGIF 537 (807)
Q Consensus 487 -i--~Is~sel--~-----------~~---~vG------~~~~~ir~lF~~A~----~~~PsILfIDEID~L~~~r~~~~ 537 (807)
+ .-.|... + .. -.+ -....+|++...+. ...+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0001100 0 00 000 11234555555432 24577999999998643
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 538 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 538 ~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
...|.||..++. .+.+.++|.+|+.++.+.+.+++ | ...+.+++|+.++-.++|.....
T Consensus 156 ----------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--R-c~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 156 ----------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--R-CRKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred ----------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--c-ceEEECCCCCHHHHHHHHHHhcc
Confidence 234677777774 34456677788888888888877 6 46889999999999999887642
Q ss_pred cCCCCCccCHHHHHhhCCCCcHHHHHHHH
Q 003619 618 KVKMSDSVDLSSYAKNLPGWTGARLAQLV 646 (807)
Q Consensus 618 ~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv 646 (807)
. ..+..+..++..+.| ++....+++
T Consensus 215 ~---~~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 215 D---LPDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred c---CCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 1 111123456666666 555544444
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=6.1e-09 Score=113.54 Aligned_cols=169 Identities=15% Similarity=0.246 Sum_probs=114.1
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--------CEEEEeCchh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--------PFYQMAGSEF 494 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--------pfi~Is~sel 494 (807)
+|++|+|++.+++.|...+.. .+.++..||+||+|+|||++|+++|+.+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 589999999999998877532 244567899999999999999999997632 222332210
Q ss_pred HHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCC
Q 003619 495 VEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGK 570 (807)
Q Consensus 495 ~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~ 570 (807)
+ ...+...++++.+.+.. ....|++|||+|.+... ..|.||..++. ++.
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~----------------------a~naLLK~LEe--pp~ 122 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ----------------------AQNAFLKTIEE--PPK 122 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH----------------------HHHHHHHHhcC--CCC
Confidence 0 01123456666664432 23459999999986432 34677888874 445
Q ss_pred ceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCC
Q 003619 571 GVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (807)
Q Consensus 571 ~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~G 636 (807)
++++|.+|+.++.+.|.+++ |. ..+++++|+.++....+...... . .+..+..++..+.|
T Consensus 123 ~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 123 GVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred CeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 55666666778999999988 64 68999999999888888765432 1 12235556666655
No 180
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=2.6e-10 Score=108.93 Aligned_cols=113 Identities=35% Similarity=0.421 Sum_probs=69.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH--HHhhhhhHH------HHHHHHHHHhCCCcEEEeccchhhhh
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE--VLVGVGSAR------IRDLFKRAKVNKPSVIFIDEIDALAT 531 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~--~~vG~~~~~------ir~lF~~A~~~~PsILfIDEID~L~~ 531 (807)
+|||+||||||||++|+.+|+.++.+++.++++...+ .+.|.-.-. ....+..+. ..++|++|||++....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCCH
Confidence 5899999999999999999999999999998876432 222221100 000000111 1577999999997532
Q ss_pred hhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-------C-CCC------ceEEEeccCccC----CCCcccCCCcc
Q 003619 532 RRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-------D-TGK------GVIFLAATNRRD----LLDPALLRPGR 593 (807)
Q Consensus 532 ~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-------~-~~~------~VIVIAATN~pd----~LDpALlRpGR 593 (807)
+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ |
T Consensus 80 -------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 80 -------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp -------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred -------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 2333344444431100 0 111 489999999988 79999998 7
Q ss_pred c
Q 003619 594 F 594 (807)
Q Consensus 594 F 594 (807)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 6
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.99 E-value=4.7e-09 Score=126.03 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=121.1
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV 497 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~ 497 (807)
+.+|++++|.+...+.+.+.+..+.. ...+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35788999999999888877776432 23489999999999999999998754 679999999865332
Q ss_pred -----Hhhhh-------hHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-
Q 003619 498 -----LVGVG-------SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD- 564 (807)
Q Consensus 498 -----~vG~~-------~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd- 564 (807)
+.|.. .......|+. ....+||||||+.+... .+..+..+++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~~-------------------~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPLE-------------------LQPKLLRVLQEQEF 499 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCHH-------------------HHHHHHHHHHhCCE
Confidence 22210 0111233443 33569999999997643 2223333443311
Q ss_pred -CC----CCCCceEEEeccCccC--CCCcccCCCccccE--EEeccCCCHHHHHH----HHHHHhhcC----CCC-CccC
Q 003619 565 -GF----DTGKGVIFLAATNRRD--LLDPALLRPGRFDR--KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSVD 626 (807)
Q Consensus 565 -g~----~~~~~VIVIAATN~pd--~LDpALlRpGRFdr--~I~I~lPd~eeR~e----ILk~~L~~~----~l~-~dvd 626 (807)
.. ....++.+|++|+..- .+....+++.-|.+ .+.+..|+..+|.+ ++++++.+. +.. ..+.
T Consensus 500 ~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s 579 (686)
T PRK15429 500 ERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIP 579 (686)
T ss_pred EeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11 1124578898887642 12222222111111 45677888888766 334444321 111 1122
Q ss_pred ---HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 627 ---LSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 627 ---L~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
+..+....---+.++|++++++|+..+
T Consensus 580 ~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 580 AETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 444544433337899999999998765
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=5.4e-09 Score=123.66 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=128.2
Q ss_pred cccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-Ee--
Q 003619 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQ-MA-- 490 (807)
Q Consensus 414 ~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~-Is-- 490 (807)
.+.+...+.+++||+|+++.+++|+.++..... +..+.+.++|+||||||||++++.+|++++..++. .+
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 345666788999999999999988887765322 23344569999999999999999999988765433 11
Q ss_pred -CchhH----------HHH--hhhhhHHHHHHHHHHHh----------CCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 491 -GSEFV----------EVL--VGVGSARIRDLFKRAKV----------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 491 -~sel~----------~~~--vG~~~~~ir~lF~~A~~----------~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
|.... ..+ .......++.++..+.. ....||+|||++.+....
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-------------- 211 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-------------- 211 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------------
Confidence 11000 000 01123344555555531 245699999999865321
Q ss_pred hhHHHHHHHHHHHH-hhcCCCCCCceEEEeccC-ccC--------------CCCcccCCCccccEEEeccCCCHHHHHHH
Q 003619 548 ATQERETTLNQLLI-ELDGFDTGKGVIFLAATN-RRD--------------LLDPALLRPGRFDRKIRIRAPNAKGRTEI 611 (807)
Q Consensus 548 ~~~e~~~tLn~LL~-eLdg~~~~~~VIVIAATN-~pd--------------~LDpALlRpGRFdr~I~I~lPd~eeR~eI 611 (807)
. ..+..+|. ... . ...+.+|++++ .+. .|.++++...|. ..|.|.+.......+.
T Consensus 212 -~----~~lq~lLr~~~~--e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 212 -T----RALHEILRWKYV--S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKF 282 (637)
T ss_pred -H----HHHHHHHHHHhh--c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHH
Confidence 1 12333333 111 1 12233333332 221 133566642233 4789999999997777
Q ss_pred HHHHhhcCCC--C------CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHH-------hCCCccCHHHHHHHHH
Q 003619 612 LKIHASKVKM--S------DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR-------KGHESILSSDMDDAVD 671 (807)
Q Consensus 612 Lk~~L~~~~l--~------~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~r-------r~~~~It~edl~~Al~ 671 (807)
|+..+..... . ....+..|+....| |++.+++.....+.+ .+...++..++..+..
T Consensus 283 L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 283 LNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred HHHHHHhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 7766654211 1 11246667776555 887777766554432 2233455555555443
No 183
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.99 E-value=3e-10 Score=116.96 Aligned_cols=45 Identities=40% Similarity=0.663 Sum_probs=35.0
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.|+||+|++.+|..|.-... .++++||+||||||||++|+++..-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHC
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999874422 2458999999999999999999973
No 184
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.99 E-value=3e-09 Score=110.45 Aligned_cols=209 Identities=20% Similarity=0.287 Sum_probs=122.9
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-C----CCEEEE
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-G----VPFYQM 489 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-g----~pfi~I 489 (807)
++++..+..++||+|.++..++|+-+...=..| +++|.||||||||+-+.++|+++ | --++.+
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 667778899999999999999998765543333 68999999999999999999987 2 235666
Q ss_pred eCchhHHHHhhhhhHHHHHHHHHHHhCC-C---cEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC
Q 003619 490 AGSEFVEVLVGVGSARIRDLFKRAKVNK-P---SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 565 (807)
Q Consensus 490 s~sel~~~~vG~~~~~ir~lF~~A~~~~-P---sILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg 565 (807)
|+|+-.+- .. -+..-..|.+-+-.- | .|++|||+|++... .++.+...+..
T Consensus 85 NASdeRGI--Dv-VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------------AQQAlRRtMEi--- 139 (333)
T KOG0991|consen 85 NASDERGI--DV-VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------------AQQALRRTMEI--- 139 (333)
T ss_pred cCcccccc--HH-HHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------------HHHHHHHHHHH---
Confidence 76653221 11 111223454444332 2 39999999997543 22223322222
Q ss_pred CCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-ccCHHHHHhhCCCCcHHHHHH
Q 003619 566 FDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-SVDLSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 566 ~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-dvdL~~LA~~T~GfSgaDL~~ 644 (807)
+. +...++.++|..+.+=+.+.+ |. -.+.+...+..+...-|....+..++.- +.-++.+.-...| |.++
T Consensus 140 yS--~ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQ 210 (333)
T KOG0991|consen 140 YS--NTTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQ 210 (333)
T ss_pred Hc--ccchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHH
Confidence 11 223466678887776666665 43 2333444444443333333333333332 2225555554555 7777
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 645 LVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 645 Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
.+|... +.-.+-..|+.+.+-..++
T Consensus 211 alNnLQ--st~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 211 ALNNLQ--STVNGFGLVNQENVFKVCD 235 (333)
T ss_pred HHHHHH--HHhccccccchhhhhhccC
Confidence 777643 4445666677776655443
No 185
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.99 E-value=2.4e-09 Score=126.65 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=68.1
Q ss_pred CceEEEeccCcc--CCCCcccCCCcccc---EEEecc--CC-CHHHHHHHHHHHh---hcCCCCCccC---HHHHH---h
Q 003619 570 KGVIFLAATNRR--DLLDPALLRPGRFD---RKIRIR--AP-NAKGRTEILKIHA---SKVKMSDSVD---LSSYA---K 632 (807)
Q Consensus 570 ~~VIVIAATN~p--d~LDpALlRpGRFd---r~I~I~--lP-d~eeR~eILk~~L---~~~~l~~dvd---L~~LA---~ 632 (807)
-++.+|+++|.. ..+||.+++ ||+ ..+.++ .| +.+.|.++.+... +..+..+.++ +..+. .
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 367899999974 568999998 998 666554 34 4555555544332 2221112222 23332 2
Q ss_pred hCC------CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 633 NLP------GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 633 ~T~------GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
+.. ..+.++|.+++++|...|..++...|+.+|+.+|++...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 211 245799999999998888888888999999999987654
No 186
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=6.6e-09 Score=104.77 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=95.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p------------------------fi~Is~sel~~~~vG~~~~~ir~lF~ 511 (807)
+.+..+||+||+|+|||++|+++++.+... +..+.... ...+...++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-----~~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-----QSIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-----CcCCHHHHHHHHH
Confidence 456689999999999999999999986431 22221110 0012345666666
Q ss_pred HHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 512 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
.+.. ....|++|||+|.+... ..+.|+..++. .+...++|.+||.++.+.++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~----------------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA----------------------AANALLKTLEE--PPPNTLFILITPSPEKLLPT 142 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH----------------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHH
Confidence 5543 33459999999987532 23567777765 23345566667777899999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCC
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~G 636 (807)
+++ |. ..+.+++|+.++..++++.. +++ +..+..++..+.|
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 988 65 58999999999999888776 232 2235566665554
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.5e-09 Score=117.61 Aligned_cols=161 Identities=28% Similarity=0.455 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc-hhHHHHhhhhhHHHHHHHHH
Q 003619 434 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFVEVLVGVGSARIRDLFKR 512 (807)
Q Consensus 434 keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s-el~~~~vG~~~~~ir~lF~~ 512 (807)
.++-.-++.++++++. .+-..+||+||||+|||.||-.+|...+.||+.+-.+ +....-....-..++..|+.
T Consensus 520 l~~G~llv~qvk~s~~------s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSER------SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFED 593 (744)
T ss_pred HhhHHHHHHHhhcccc------CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHH
Confidence 3344445556666654 3345799999999999999999999999999987544 33333233344568999999
Q ss_pred HHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC-CCceEEEeccCccCCCCc-ccCC
Q 003619 513 AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDP-ALLR 590 (807)
Q Consensus 513 A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~-~~~VIVIAATN~pd~LDp-ALlR 590 (807)
|.+..-+||++|+|+.|..-- ..+....+.++..|+..+...++ +...+|++||.+.+.|.. .++.
T Consensus 594 AYkS~lsiivvDdiErLiD~v------------pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~ 661 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYV------------PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD 661 (744)
T ss_pred hhcCcceEEEEcchhhhhccc------------ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH
Confidence 999999999999999987432 22334445556666666665433 346888888887665432 4555
Q ss_pred CccccEEEeccCCCH-HHHHHHHHH
Q 003619 591 PGRFDRKIRIRAPNA-KGRTEILKI 614 (807)
Q Consensus 591 pGRFdr~I~I~lPd~-eeR~eILk~ 614 (807)
.|+..|++|.... ++..+++..
T Consensus 662 --~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 662 --CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred --hhhheeecCccCchHHHHHHHHH
Confidence 8999999987654 555665543
No 188
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=5.3e-09 Score=118.70 Aligned_cols=158 Identities=27% Similarity=0.384 Sum_probs=88.7
Q ss_pred cCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEEeCc----
Q 003619 424 FSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQMAGS---- 492 (807)
Q Consensus 424 F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p-------fi~Is~s---- 492 (807)
++++.+.++..+.+... +. ..++++|+||||||||++|+++|..+... ++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~---L~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LT-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---Hh-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 66777777666555433 22 24589999999999999999999877421 2333322
Q ss_pred hhHHHHh--hhh----hHHHHHHHHHHHhC--CCcEEEeccchhhhhhhc-CcccCcchhhhhhhhHHHHHHHHHHHHh-
Q 003619 493 EFVEVLV--GVG----SARIRDLFKRAKVN--KPSVIFIDEIDALATRRQ-GIFKDTTDHLYNAATQERETTLNQLLIE- 562 (807)
Q Consensus 493 el~~~~v--G~~----~~~ir~lF~~A~~~--~PsILfIDEID~L~~~r~-~~~~~~~d~~~~~~~~e~~~tLn~LL~e- 562 (807)
+++..+. +.+ ...+..++..|... .|++||||||+.....+- +......++ ......-.+.....+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~----~~rg~~~~v~l~y~e~ 315 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEH----DKRGENWSVPLTYSEN 315 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccc----cccccccceeeecccc
Confidence 2222221 111 11344555666543 589999999998653321 000000000 000000000000011
Q ss_pred -hcCCCCCCceEEEeccCccC----CCCcccCCCccccEEEeccC
Q 003619 563 -LDGFDTGKGVIFLAATNRRD----LLDPALLRPGRFDRKIRIRA 602 (807)
Q Consensus 563 -Ldg~~~~~~VIVIAATN~pd----~LDpALlRpGRFdr~I~I~l 602 (807)
.+.+..+.++.||||+|..+ .+|.|++| ||. .|++.+
T Consensus 316 d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 316 DEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 12356678999999999988 69999999 885 455554
No 189
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.96 E-value=9.3e-09 Score=110.79 Aligned_cols=149 Identities=28% Similarity=0.379 Sum_probs=98.5
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC----------------------
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------------------- 483 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---------------------- 483 (807)
+++|.+++...+...+..-. +.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 56777777777765544211 2344699999999999999999999875
Q ss_pred --CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHH
Q 003619 484 --VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLN 557 (807)
Q Consensus 484 --~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn 557 (807)
-.++.++.++....- .....++++-..... ...-|++|||+|.+... ..|
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~----------------------A~n 127 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED----------------------AAN 127 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH----------------------HHH
Confidence 456777766533210 123344444443322 23469999999998643 235
Q ss_pred HHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHH
Q 003619 558 QLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILK 613 (807)
Q Consensus 558 ~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk 613 (807)
.++..++. .+.+..+|.+||.++.+-+.+++ | +..+.|++|+...+....+
T Consensus 128 allk~lEe--p~~~~~~il~~n~~~~il~tI~S--R-c~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 128 ALLKTLEE--PPKNTRFILITNDPSKILPTIRS--R-CQRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHHHhcc--CCCCeEEEEEcCChhhccchhhh--c-ceeeecCCchHHHHHHHhh
Confidence 66666663 45567788889999998888887 5 4677887765544444333
No 190
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-09 Score=121.96 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=125.5
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA------------------ 482 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el------------------ 482 (807)
...|.||+|++.+|+.|.... ..++++|++||||||||+||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 468999999999999997442 345689999999999999999987632
Q ss_pred -----------CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHH
Q 003619 483 -----------GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQE 551 (807)
Q Consensus 483 -----------g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e 551 (807)
..||..-.-+.-....+|.+....-.-+.. ....||||||+-.+-
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsL---AH~GVLFLDElpef~--------------------- 296 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISL---AHNGVLFLDELPEFK--------------------- 296 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceee---ecCCEEEeeccchhh---------------------
Confidence 012211111111122233221110011111 223499999987643
Q ss_pred HHHHHHHHHHhhcCCC-----------CCCceEEEeccCccC-----------------------CCCcccCCCccccEE
Q 003619 552 RETTLNQLLIELDGFD-----------TGKGVIFLAATNRRD-----------------------LLDPALLRPGRFDRK 597 (807)
Q Consensus 552 ~~~tLn~LL~eLdg~~-----------~~~~VIVIAATN~pd-----------------------~LDpALlRpGRFdr~ 597 (807)
..+++.|-+-|+.-. -+.++.+|+|+|..- .|...+++ |+|..
T Consensus 297 -~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~ 373 (490)
T COG0606 297 -RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLM 373 (490)
T ss_pred -HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhhe
Confidence 245566655555311 123477888888522 13334556 99999
Q ss_pred EeccCCCHHHH--------------HHHHHHH----hhcCCC--C----------------CccCHHHHHhhCCCCcHHH
Q 003619 598 IRIRAPNAKGR--------------TEILKIH----ASKVKM--S----------------DSVDLSSYAKNLPGWTGAR 641 (807)
Q Consensus 598 I~I~lPd~eeR--------------~eILk~~----L~~~~l--~----------------~dvdL~~LA~~T~GfSgaD 641 (807)
+.++.++..++ ..+.+.+ .+.... . .+.++.+.+-..-++|.+.
T Consensus 374 vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~ 453 (490)
T COG0606 374 VEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARA 453 (490)
T ss_pred ecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHH
Confidence 99988764332 2222211 111111 1 1122333344455788888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 642 LAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 642 L~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
...+++-|..+|..++.+.|...|+.+|+.
T Consensus 454 ~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 454 YHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred HHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 888999999888888888888999888875
No 191
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.92 E-value=3.2e-08 Score=105.60 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=72.8
Q ss_pred eEEEeccCc-------------cCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCc-cCHHHHHhhCCCC
Q 003619 572 VIFLAATNR-------------RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDS-VDLSSYAKNLPGW 637 (807)
Q Consensus 572 VIVIAATN~-------------pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~d-vdL~~LA~~T~Gf 637 (807)
-+||.|||+ |.-+++.|+. |+ ..|..-+++.++.++|++.+.+...+.-+ ..+..++.....-
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t 402 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST 402 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch
Confidence 366667775 2335666665 54 35566678888999999998876666533 3366777776666
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 003619 638 TGARLAQLVQEAALVAVRKGHESILSSDMDDAVDRLT 674 (807)
Q Consensus 638 SgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~rv~ 674 (807)
|-+-..+++.-|...|...+++.|..+|++++-+-..
T Consensus 403 sLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 403 SLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred hHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 7777888888888999999999999999998765444
No 192
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.2e-08 Score=111.95 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=120.7
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------- 485 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p----------------- 485 (807)
.|++|+|++++++.|.+.+.. .+.+...||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999888753 1345689999999999999999999875221
Q ss_pred -EEEEeCchhH-H-----H---Hhh--------hhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchh
Q 003619 486 -FYQMAGSEFV-E-----V---LVG--------VGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDH 543 (807)
Q Consensus 486 -fi~Is~sel~-~-----~---~vG--------~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~ 543 (807)
++.+...... + . ..| -....+|++.+.+.. ....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 1222111000 0 0 000 012245555544432 34569999999987432
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC
Q 003619 544 LYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD 623 (807)
Q Consensus 544 ~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~ 623 (807)
..|.||..++... +.++|..|+.++.|-|.+++ | ...+.|++|+.++..++|+....... .
T Consensus 140 -----------aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--R-cq~i~f~~l~~~~~~~~L~~~~~~~~--~ 200 (314)
T PRK07399 140 -----------AANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--R-CQIIPFYRLSDEQLEQVLKRLGDEEI--L 200 (314)
T ss_pred -----------HHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--h-ceEEecCCCCHHHHHHHHHHhhcccc--c
Confidence 3467888887543 33556677788999999998 6 47899999999999999887643211 1
Q ss_pred ccCHHHHHhhCCCCcHHHHHHHHHH
Q 003619 624 SVDLSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 624 dvdL~~LA~~T~GfSgaDL~~Lv~e 648 (807)
+.+...++....| ++++..++++.
T Consensus 201 ~~~~~~l~~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 201 NINFPELLALAQG-SPGAAIANIEQ 224 (314)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHH
Confidence 1224667777766 56665555543
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=98.90 E-value=1.5e-08 Score=122.79 Aligned_cols=172 Identities=21% Similarity=0.206 Sum_probs=122.6
Q ss_pred eEEEEc--CCCChHHHHHHHHHHhc-----CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCC------CcEEEeccc
Q 003619 460 GVLLEG--PPGCGKTLVAKAIAGEA-----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK------PSVIFIDEI 526 (807)
Q Consensus 460 gVLL~G--PPGTGKT~LArALA~el-----g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~------PsILfIDEI 526 (807)
.-+..| |++.|||++|+++|+++ +.+++.+|+++..+ ...+++++..+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 345668 99999999999999997 56899999997422 234566555443222 259999999
Q ss_pred hhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHH
Q 003619 527 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAK 606 (807)
Q Consensus 527 D~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~e 606 (807)
|.+... ..+.|+..|+. .+.++.+|.+||.+..+.+++++ | +..+.|++|+.+
T Consensus 640 D~Lt~~----------------------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--R-C~~i~F~~ls~~ 692 (846)
T PRK04132 640 DALTQD----------------------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--R-CAIFRFRPLRDE 692 (846)
T ss_pred ccCCHH----------------------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--h-ceEEeCCCCCHH
Confidence 997532 23556666664 34567888899999999999998 7 478999999999
Q ss_pred HHHHHHHHHhhcCCCC-CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 607 GRTEILKIHASKVKMS-DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 607 eR~eILk~~L~~~~l~-~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+....|+..+.+.++. ++..+..++..+.| +.+..-++++.++.. ...|+.+++....
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~-----~~~It~~~V~~~~ 751 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL-----DDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh-----cCCCCHHHHHHHh
Confidence 9998888877654443 33457888888887 555655666554422 2357777665543
No 194
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=9.3e-09 Score=103.07 Aligned_cols=123 Identities=26% Similarity=0.404 Sum_probs=77.4
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH-----H
Q 003619 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-----L 498 (807)
Q Consensus 427 VvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~-----~ 498 (807)
|+|.+...+++.+.+..+.. .+.+|||+|++||||+++|+++.+.. +.||+.++|+.+... +
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888888888877776432 23589999999999999999998865 579999999876543 2
Q ss_pred hhhhh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CCCC-
Q 003619 499 VGVGS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFDT- 568 (807)
Q Consensus 499 vG~~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~~~- 568 (807)
.|... .....+|+.|... +||||||+.|... .+..+.++|+.-. ....
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~-------------------~Q~~Ll~~l~~~~~~~~g~~ 128 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPE-------------------LQAKLLRVLEEGKFTRLGSD 128 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HH-------------------HHHHHHHHHHHSEEECCTSS
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHHH-------------------HHHHHHHHHhhchhcccccc
Confidence 33211 1123566665544 9999999998654 3344455555421 1111
Q ss_pred ---CCceEEEeccCcc
Q 003619 569 ---GKGVIFLAATNRR 581 (807)
Q Consensus 569 ---~~~VIVIAATN~p 581 (807)
..++.+|++|+.+
T Consensus 129 ~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 129 KPVPVDVRIIASTSKD 144 (168)
T ss_dssp SEEE--EEEEEEESS-
T ss_pred ccccccceEEeecCcC
Confidence 2368999999853
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.86 E-value=3.8e-08 Score=108.78 Aligned_cols=66 Identities=38% Similarity=0.592 Sum_probs=51.4
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeCchhH
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFV 495 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~sel~ 495 (807)
..+.++|+.++.+..--+++.++... -.++++||.||||||||.||-++|+++| .||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 34679999999999988888876543 2467999999999999999999999996 899999988765
No 196
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.84 E-value=4.3e-09 Score=105.76 Aligned_cols=114 Identities=31% Similarity=0.390 Sum_probs=71.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC----CEEEEeCchhHHHHhhhhhHHHHHHHHHH----HhCCCcEEEeccchh
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGSEFVEVLVGVGSARIRDLFKRA----KVNKPSVIFIDEIDA 528 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~elg~----pfi~Is~sel~~~~vG~~~~~ir~lF~~A----~~~~PsILfIDEID~ 528 (807)
|-..+||.||+|||||.+|+++|..+.. +++.++++++... +.....+..++..+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3447899999999999999999999996 9999999988761 11111122222211 111123999999999
Q ss_pred hhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC---------CCCCceEEEeccCccCC
Q 003619 529 LATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRDL 583 (807)
Q Consensus 529 L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~---------~~~~~VIVIAATN~pd~ 583 (807)
.....+.. .+.....+.+.||+.+++- -.-+++++|+|+|--..
T Consensus 80 a~~~~~~~-----------~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGG-----------ADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTC-----------SHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccccccc-----------chhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 87642110 2222334555666655431 11256899999996553
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-08 Score=110.02 Aligned_cols=107 Identities=32% Similarity=0.468 Sum_probs=73.1
Q ss_pred cccccHHHHHHHHHHHHH----hcChhhhhhcCCCC-CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH-Hh
Q 003619 426 DVAGIDEAVEELQELVRY----LKNPELFDKMGIKP-PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LV 499 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~----L~~pe~~~~lGl~~-p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~-~v 499 (807)
-|+|++.+|+.|.-.+-. +.+.+. .-.+.. ..+|||.||+|||||+||+.+|+.+++||...++..+.+. |+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 377999998877533221 111110 000111 2379999999999999999999999999999999887653 77
Q ss_pred hhhhHH-HHHHHHHH----HhCCCcEEEeccchhhhhhhc
Q 003619 500 GVGSAR-IRDLFKRA----KVNKPSVIFIDEIDALATRRQ 534 (807)
Q Consensus 500 G~~~~~-ir~lF~~A----~~~~PsILfIDEID~L~~~r~ 534 (807)
|+.-.+ +..++..| .+....|++|||||.++.+..
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 776444 34444443 223456999999999987653
No 198
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.81 E-value=2e-08 Score=112.10 Aligned_cols=220 Identities=20% Similarity=0.313 Sum_probs=127.4
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEE-----
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQ----- 488 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------g~pfi~----- 488 (807)
...|.-++|++..|..|-- . .-+|. -.|+||.|+.|||||+++|+||.-+ |+||-.
T Consensus 13 ~~pf~aivGqd~lk~aL~l--~-av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGL--N-AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhh--h-hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4678899999998877741 1 22232 2489999999999999999999866 222210
Q ss_pred -EeCchhHHH-------------------HhhhhhHHH------HHHHH---------HHHhCCCcEEEeccchhhhhhh
Q 003619 489 -MAGSEFVEV-------------------LVGVGSARI------RDLFK---------RAKVNKPSVIFIDEIDALATRR 533 (807)
Q Consensus 489 -Is~sel~~~-------------------~vG~~~~~i------r~lF~---------~A~~~~PsILfIDEID~L~~~r 533 (807)
-.|.....+ -.+.++.++ ....+ .....+..||++||+..|..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~- 159 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH- 159 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH-
Confidence 001111111 011122211 11111 001123459999999887532
Q ss_pred cCcccCcchhhhhhhhHHHHHHHHHHHHhh---------cCC--CCCCceEEEeccCccC-CCCcccCCCccccEEEecc
Q 003619 534 QGIFKDTTDHLYNAATQERETTLNQLLIEL---------DGF--DTGKGVIFLAATNRRD-LLDPALLRPGRFDRKIRIR 601 (807)
Q Consensus 534 ~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL---------dg~--~~~~~VIVIAATN~pd-~LDpALlRpGRFdr~I~I~ 601 (807)
..+.||+.+ +|+ ..+.++++|+|+|..+ .|-|.|+. ||...+.+.
T Consensus 160 ---------------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~ 216 (423)
T COG1239 160 ---------------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTH 216 (423)
T ss_pred ---------------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeecc
Confidence 233333332 222 3456799999999754 58888998 999999998
Q ss_pred CC-CHHHHHHHHHHHhhcCCCCCccCHHHHHhh-----------CCC----------------------Cc-HHHHHHHH
Q 003619 602 AP-NAKGRTEILKIHASKVKMSDSVDLSSYAKN-----------LPG----------------------WT-GARLAQLV 646 (807)
Q Consensus 602 lP-d~eeR~eILk~~L~~~~l~~dvdL~~LA~~-----------T~G----------------------fS-gaDL~~Lv 646 (807)
.| +.++|.+|.+..+... ..++.-++.++.. ..+ .. .+.-..++
T Consensus 217 ~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~ 295 (423)
T COG1239 217 YPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVV 295 (423)
T ss_pred CCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 76 6888999887665431 1111111111110 011 11 11112245
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhcCC
Q 003619 647 QEAALVAVRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 647 ~eAal~A~rr~~~~It~edl~~Al~rv~~g~ 677 (807)
+.|...|...++..++.+|+++|..-.....
T Consensus 296 r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR 326 (423)
T COG1239 296 RAAKALAALRGRTEVEEEDIREAAELALLHR 326 (423)
T ss_pred HHHHHHHHhcCceeeehhhHHHHHhhhhhhh
Confidence 6666777778888888899988887665443
No 199
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=4.7e-08 Score=107.82 Aligned_cols=156 Identities=21% Similarity=0.310 Sum_probs=104.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC------------------------CEEEEeCchhHHHHhhhhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------------------PFYQMAGSEFVEVLVGVGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~------------------------pfi~Is~sel~~~~vG~~~~~ir~lF~ 511 (807)
+.+..+||+||+|+|||++|+++|+.+.+ .++.+...+- . ..-+...+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 56778999999999999999999997643 1222221100 0 0113356676666
Q ss_pred HHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 512 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
.+.. ....|++|||+|.+.. ...|.||..++. ++.++++|.+|+.++.|.|.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~----------------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR----------------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH----------------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHH
Confidence 5543 3355999999999753 234778888885 44678888899999999999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHH
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQL 645 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~L 645 (807)
+++ |. ..+.|++|+.++-.+.|...... ..+.+...++....| ++.....+
T Consensus 153 I~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 153 IKS--RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred HHh--hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 998 75 46899999999888888765321 122234455666666 34333333
No 200
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.78 E-value=2.1e-07 Score=105.73 Aligned_cols=210 Identities=21% Similarity=0.313 Sum_probs=122.7
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v 499 (807)
.+.+++|.+.....+.+.+..+.. ....++++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 445688887776666655544332 23479999999999999999997754 57999999987644321
Q ss_pred -----hhhhH-------HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--C
Q 003619 500 -----GVGSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (807)
Q Consensus 500 -----G~~~~-------~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g 565 (807)
|.... .....+.. ....+|||||||.+.... +..+..++..-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~~-------------------q~~L~~~l~~~~~~~ 268 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLVL-------------------QAKLLRILQEREFER 268 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHHH-------------------HHHHHHHHhcCcEEe
Confidence 11000 00112222 234699999999986432 222333333211 0
Q ss_pred CC----CCCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH----HHHHHhhcC----CCC-Ccc
Q 003619 566 FD----TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 625 (807)
Q Consensus 566 ~~----~~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e----ILk~~L~~~----~l~-~dv 625 (807)
.. ...++.+|++||..-. .+.+.|+|.. .+.+..|+..+|.+ +...++... ... ..+
T Consensus 269 ~~~~~~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~ 345 (457)
T PRK11361 269 IGGHQTIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDI 345 (457)
T ss_pred CCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 11 1235788999886421 2222333332 45677788777765 333343322 111 112
Q ss_pred C---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 626 D---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 626 d---L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
+ +..+....---+.++|++++++|+..+ ....|+.+|+...+
T Consensus 346 ~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 346 DPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 2 344444433337899999999988765 44578888886544
No 201
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.78 E-value=1.3e-07 Score=110.54 Aligned_cols=221 Identities=18% Similarity=0.266 Sum_probs=139.1
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeCchhHH
Q 003619 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFVE 496 (807)
Q Consensus 427 VvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~sel~~ 496 (807)
|.+.+....++..+++..-.++ ..+..+++.|-||||||.+++.+..++ ..+++.+|+-.+.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~ 470 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLAS 470 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecC
Confidence 4455666666666666532221 122368999999999999999998855 35677888755433
Q ss_pred H----------Hhhh------hhHHHHHHHHHH-HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHH
Q 003619 497 V----------LVGV------GSARIRDLFKRA-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQL 559 (807)
Q Consensus 497 ~----------~vG~------~~~~ir~lF~~A-~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~L 559 (807)
. +.|. +...+..-|... ....++||+|||+|.|..+.+ .++..+
T Consensus 471 ~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------------dVlYn~ 531 (767)
T KOG1514|consen 471 PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------------DVLYNI 531 (767)
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------------HHHHHH
Confidence 2 1121 112222233311 234678999999999987643 233444
Q ss_pred HHhhcCCCCCCceEEEeccCccCC----CCcccCCCcccc-EEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhC
Q 003619 560 LIELDGFDTGKGVIFLAATNRRDL----LDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNL 634 (807)
Q Consensus 560 L~eLdg~~~~~~VIVIAATN~pd~----LDpALlRpGRFd-r~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T 634 (807)
+.+-. ..+..++||+..|..+. |....-+ |++ ..|.|.+++.++.++|+...+.....-....++-+|+..
T Consensus 532 fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV 607 (767)
T KOG1514|consen 532 FDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKV 607 (767)
T ss_pred hcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH
Confidence 33321 23456788888776553 2222223 554 478899999999999999999876433222233344444
Q ss_pred CCCc--HHHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHHHHHhcCC
Q 003619 635 PGWT--GARLAQLVQEAALVAVRKGH-------ESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 635 ~GfS--gaDL~~Lv~eAal~A~rr~~-------~~It~edl~~Al~rv~~g~ 677 (807)
...| .+....+|++|...|..+.. ..|+..|+.+|+......+
T Consensus 608 AavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 608 AAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 3333 45566789999999877655 5689999999998876543
No 202
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.78 E-value=4.6e-08 Score=111.04 Aligned_cols=207 Identities=18% Similarity=0.233 Sum_probs=122.0
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v 499 (807)
.+.+++|.+...+.+.+.+..+.. ...+++|+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456788888877777766654322 23479999999999999999998765 57999999987644322
Q ss_pred hh-----hh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--C
Q 003619 500 GV-----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (807)
Q Consensus 500 G~-----~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g 565 (807)
.. .. ......+.. ....+||||||+.+.... +..+..++..-. .
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~~i~~l~~~~-------------------q~~l~~~l~~~~~~~ 264 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLDEIGDLPLNL-------------------QAKLLRFLQERVIER 264 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEechhhCCHHH-------------------HHHHHHHHhhCeEEe
Confidence 11 00 001111222 345699999999976432 233333443311 0
Q ss_pred CC----CCCceEEEeccCccC-------CCCcccCCCccccEEEeccCCCHHHHHH----HHHHHhhcC----CCC-Ccc
Q 003619 566 FD----TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS-DSV 625 (807)
Q Consensus 566 ~~----~~~~VIVIAATN~pd-------~LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~~~----~l~-~dv 625 (807)
.. .+.++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ ++++++... +.. ..+
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~ 341 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGF 341 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCC
Confidence 01 122578888887642 22333322 332 45667788777765 334444321 111 112
Q ss_pred C---HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003619 626 D---LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (807)
Q Consensus 626 d---L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~ 667 (807)
+ +..+....---+.++|++++++|+..+ ....|+.+++.
T Consensus 342 ~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 342 TDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 2 445555443337899999999998765 34567777764
No 203
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.74 E-value=1.8e-07 Score=113.49 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=89.3
Q ss_pred cccccHHHHHHHHHHHHHhcChhhh-----------hhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEE
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELF-----------DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFY 487 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~-----------~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-------g~pfi 487 (807)
.|.|++.+|..+. +..+...... ....++...+|||+|+||||||.+|+++++.. |.++.
T Consensus 451 ~I~G~e~vK~ail--L~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 451 SIKARNNVKIGLL--CQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred eEECCHHHHHHHH--HHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 5889999987773 3333322110 01224555689999999999999999998854 24555
Q ss_pred EEeCchhHHHHhhh--hhHHH-HHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc
Q 003619 488 QMAGSEFVEVLVGV--GSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD 564 (807)
Q Consensus 488 ~Is~sel~~~~vG~--~~~~i-r~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd 564 (807)
.+.+..... ..+. +...+ ...+. .....+++|||+|.+... .+..+.+++.+-.
T Consensus 529 ~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~-------------------~Q~aLlEaMEqqt 585 (915)
T PTZ00111 529 SVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE-------------------SRLSLYEVMEQQT 585 (915)
T ss_pred cccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCHH-------------------HHHHHHHHHhCCE
Confidence 554443321 0100 00000 00111 123459999999997543 2233333332211
Q ss_pred ------CC--CCCCceEEEeccCccC-------------CCCcccCCCccccEEEe-ccCCCHHHHHH
Q 003619 565 ------GF--DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIR-IRAPNAKGRTE 610 (807)
Q Consensus 565 ------g~--~~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I~-I~lPd~eeR~e 610 (807)
|. .-+.++.||||+|... .|+++|++ |||..+- ++.|+.+.=..
T Consensus 586 IsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~ 651 (915)
T PTZ00111 586 VTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQL 651 (915)
T ss_pred EEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHH
Confidence 11 1235689999999742 37889999 9998654 45566544333
No 204
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=6.1e-08 Score=106.86 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=103.8
Q ss_pred ccCcccc-cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 003619 423 KFSDVAG-IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------- 485 (807)
Q Consensus 423 ~F~dVvG-~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p---------------- 485 (807)
.|++|.| ++.+++.|+..+.. .+.+..+||+||+|+||+++|+++|+.+-.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 3678888 88898988877542 2456678999999999999999999876321
Q ss_pred --------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHH
Q 003619 486 --------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERE 553 (807)
Q Consensus 486 --------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~ 553 (807)
+..+... + ...+...++++.+.+.. ....|++|||+|.+...
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~--------------------- 125 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS--------------------- 125 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH---------------------
Confidence 2222111 0 00123456666555432 23459999999987532
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHH
Q 003619 554 TTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (807)
Q Consensus 554 ~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~ 614 (807)
..|.||..++. +++++++|.+|+.++.|.|.+++ | ...+++++|+.++..+.|+.
T Consensus 126 -a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--R-c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 126 -AANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--R-CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -HHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--h-ceeeeCCCCCHHHHHHHHHH
Confidence 34678888884 45567777788888899999998 6 46889999999888777754
No 205
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.73 E-value=6.4e-08 Score=114.86 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=64.7
Q ss_pred ceEEEeccCcc--CCCCcccCCCcccc---EEEeccC--C-CHHHHHHHHHHHhhcCC---CCCccC---HHHHHh---h
Q 003619 571 GVIFLAATNRR--DLLDPALLRPGRFD---RKIRIRA--P-NAKGRTEILKIHASKVK---MSDSVD---LSSYAK---N 633 (807)
Q Consensus 571 ~VIVIAATN~p--d~LDpALlRpGRFd---r~I~I~l--P-d~eeR~eILk~~L~~~~---l~~dvd---L~~LA~---~ 633 (807)
++.+|+++|.. ..+||+|.. ||. ..+.++. + +.+.+..+++...+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888874 457899887 775 4555542 3 34555666654443221 112233 222222 2
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003619 634 LPG------WTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 634 T~G------fSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~r 672 (807)
..| ...++|.+++++|...|..+++..++.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 222 346899999999999999999999999999988754
No 206
>PRK08116 hypothetical protein; Validated
Probab=98.71 E-value=7.9e-08 Score=103.18 Aligned_cols=69 Identities=26% Similarity=0.462 Sum_probs=49.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh----hhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----GSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~----~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
+.+++|+|++|||||+||.++|+++ +.++++++.+++...+... ......++++.. ....+|+|||++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccC
Confidence 4579999999999999999999975 7899999988877654322 111122333332 3456999999964
No 207
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.69 E-value=1.4e-07 Score=108.00 Aligned_cols=210 Identities=20% Similarity=0.294 Sum_probs=124.8
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV 499 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v 499 (807)
.+.+++|.....+.+.+.+..+.. ....++|.|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 356789988888777766654332 23479999999999999999998875 57999999987643321
Q ss_pred -----hhhhH-------HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--C
Q 003619 500 -----GVGSA-------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--G 565 (807)
Q Consensus 500 -----G~~~~-------~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g 565 (807)
|.... .....|+. .....|||||||.+.... +..+..++..-. .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l~~~~-------------------q~~L~~~l~~~~~~~ 263 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDMPLDV-------------------QTRLLRVLADGQFYR 263 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccCCHHH-------------------HHHHHHHHhcCcEEe
Confidence 11100 00011222 235589999999976432 223333443211 0
Q ss_pred C----CCCCceEEEeccCccC-------CCCcccCCCccccEEEeccCCCHHHHHH----HHHHHhhcC----CCC----
Q 003619 566 F----DTGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRTE----ILKIHASKV----KMS---- 622 (807)
Q Consensus 566 ~----~~~~~VIVIAATN~pd-------~LDpALlRpGRFdr~I~I~lPd~eeR~e----ILk~~L~~~----~l~---- 622 (807)
. ....++.+|+||+..- .+.+.|.. |+. .+.+..|+..+|.+ ++.++++.. ...
T Consensus 264 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~ 340 (469)
T PRK10923 264 VGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLL 340 (469)
T ss_pred CCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCc
Confidence 0 1123468888887532 23344443 442 35566676666654 445554321 111
Q ss_pred CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 623 DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 623 ~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
....+..+....---+.++|++++++|...+ ....|+.+|+...+
T Consensus 341 ~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 341 HPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 1112444555443347899999999998776 44578888876544
No 208
>PRK12377 putative replication protein; Provisional
Probab=98.68 E-value=1.4e-07 Score=100.34 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhH--HHHHHHHHHHhCCCcEEEeccchhh
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSA--RIRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~~~--~ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.+++|+||||||||+||.|+|+++ +..+++++..++...+...... ...+++.. ....++|+|||++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCC
Confidence 589999999999999999999977 6788888888887754332111 11223333 246679999999764
No 209
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.67 E-value=1.7e-07 Score=106.78 Aligned_cols=211 Identities=21% Similarity=0.285 Sum_probs=120.1
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh--
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV-- 499 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v-- 499 (807)
.+++|.+...+++.+.+..+.. ....+++.|++||||+++|+++.... +.||+.++|..+...+.
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4588888877777666554332 23479999999999999999998764 67999999987644322
Q ss_pred ---hhhhH----HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC--CC---
Q 003619 500 ---GVGSA----RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG--FD--- 567 (807)
Q Consensus 500 ---G~~~~----~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg--~~--- 567 (807)
|.... ..............++|||||||.+... .+..+..++..-.. ..
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------------~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------------AQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------------HHHHHHHHHhcCcEEECCCCc
Confidence 11000 0000000111234679999999997643 23334444443211 01
Q ss_pred -CCCceEEEeccCccC-------CCCcccCCCccccEEEeccCCCHHHHH----HHHHHHhhcC----CCC-CccC---H
Q 003619 568 -TGKGVIFLAATNRRD-------LLDPALLRPGRFDRKIRIRAPNAKGRT----EILKIHASKV----KMS-DSVD---L 627 (807)
Q Consensus 568 -~~~~VIVIAATN~pd-------~LDpALlRpGRFdr~I~I~lPd~eeR~----eILk~~L~~~----~l~-~dvd---L 627 (807)
...++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|. .++.+++... +.. ..++ +
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 341 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEAL 341 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 112567888887532 12222322 332 2445555555444 3445444332 111 1222 4
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
..+....---+.++|++++++|+..+ ....|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 44444432236799999999998776 34678888887655
No 210
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=7.9e-07 Score=100.28 Aligned_cols=225 Identities=17% Similarity=0.239 Sum_probs=148.0
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEeCchhHH---
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSEFVE--- 496 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----g-~pfi~Is~sel~~--- 496 (807)
..+.|.+..+..+++++.. .+..+.++.+.+.|-||||||.+...+-... . ...++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5688999999999888764 2234556789999999999999998775433 2 2458888865321
Q ss_pred -------HH----hhh-hhHHHHHHHHHHHh-C-CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh
Q 003619 497 -------VL----VGV-GSARIRDLFKRAKV-N-KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (807)
Q Consensus 497 -------~~----vG~-~~~~ir~lF~~A~~-~-~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e 562 (807)
.+ .+. ........|..-.. . .+-++++||+|.|..+.+. ++..+ -+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-------------------vLy~l-Fe 281 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-------------------VLYTL-FE 281 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-------------------eeeee-hh
Confidence 11 111 12333444554322 2 3669999999999855432 12221 22
Q ss_pred hcCCCCCCceEEEeccCccCCCCcccCC----CccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC--HHHHHhhCCC
Q 003619 563 LDGFDTGKGVIFLAATNRRDLLDPALLR----PGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD--LSSYAKNLPG 636 (807)
Q Consensus 563 Ldg~~~~~~VIVIAATN~pd~LDpALlR----pGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd--L~~LA~~T~G 636 (807)
+..+ .+..+++|+.+|..+.-|..|-| .+.-...+.|++++.++..+||+..+.........+ ++..|+...|
T Consensus 282 wp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 282 WPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAA 360 (529)
T ss_pred cccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhcc
Confidence 3333 34678889999987765544432 233456889999999999999999998776554433 6677888888
Q ss_pred CcH--HHHHHHHHHHHHHHHHhCCC----------------ccCHHHHHHHHHHHhcCCc
Q 003619 637 WTG--ARLAQLVQEAALVAVRKGHE----------------SILSSDMDDAVDRLTVGPK 678 (807)
Q Consensus 637 fSg--aDL~~Lv~eAal~A~rr~~~----------------~It~edl~~Al~rv~~g~~ 678 (807)
.|| +.+-.+|+.|..++..+.+. .|..+++..++..+...+.
T Consensus 361 ~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 361 PSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 777 34445788888888765432 2446777777776655443
No 211
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.65 E-value=4.6e-07 Score=99.17 Aligned_cols=215 Identities=17% Similarity=0.241 Sum_probs=129.9
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
....|+.+++.....+.+.+-...+.. ....+||.|.+||||-++|+++-... ..||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 345788888888776665544333221 12268999999999999999986644 78999999987765
Q ss_pred H-----Hhhhh--hHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CC-
Q 003619 497 V-----LVGVG--SARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GF- 566 (807)
Q Consensus 497 ~-----~vG~~--~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~- 566 (807)
. ..|.. ......+|+.|... .+|+|||..+.+. .+..+..+|+.-. ..
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp~-------------------lQaKLLRFL~DGtFRRVG 326 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSPR-------------------LQAKLLRFLNDGTFRRVG 326 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCHH-------------------HHHHHHHHhcCCceeecC
Confidence 4 23332 23456678876544 7999999986543 3444555554321 01
Q ss_pred ---CCCCceEEEeccCccCC--CCcccCCCccccE--EEeccCCCHHHHHH----HH----HHHhhcCCCC-CccC---H
Q 003619 567 ---DTGKGVIFLAATNRRDL--LDPALLRPGRFDR--KIRIRAPNAKGRTE----IL----KIHASKVKMS-DSVD---L 627 (807)
Q Consensus 567 ---~~~~~VIVIAATN~pd~--LDpALlRpGRFdr--~I~I~lPd~eeR~e----IL----k~~L~~~~l~-~dvd---L 627 (807)
+-.-+|.|||||..+-. ......|..-|.+ ++.+..|...+|.. +. ..+..+.+.. +..+ +
T Consensus 327 ee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 327 EDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred CcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 11225899999976432 2322222222222 66777787777654 22 3333334333 2222 3
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 003619 628 SSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDA 669 (807)
Q Consensus 628 ~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~A 669 (807)
..+.+.----+.++|.|.+.+|+... ....++.+++.-+
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~Lp 445 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLL---EGYELRIEDILLP 445 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHh---ccCccchhhcccC
Confidence 34444332237899999999999776 3355666666543
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=98.63 E-value=3.2e-07 Score=104.20 Aligned_cols=207 Identities=20% Similarity=0.299 Sum_probs=119.0
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV- 501 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~- 501 (807)
+++|.......+.+.+..+. .....++|+|++|||||++|+++.... +.||+.++|..+.......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 46676665555544443332 123379999999999999999998765 5799999998764432211
Q ss_pred ----hh-------HHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CCC-
Q 003619 502 ----GS-------ARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD- 567 (807)
Q Consensus 502 ----~~-------~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~~- 567 (807)
.. ......++ .....+|||||||.|.... +..+..++..-. ...
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~~-------------------q~~L~~~l~~~~~~~~g~ 262 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQ---AAEGGTLFLDEIGDMPAPL-------------------QVKLLRVLQERKVRPLGS 262 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEE---ECCCCEEEEEccccCCHHH-------------------HHHHHHHHhhCCEEeCCC
Confidence 00 00001122 2234699999999986542 222333333211 111
Q ss_pred ---CCCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH----HHHHHhhcC----CCC----Ccc
Q 003619 568 ---TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS----DSV 625 (807)
Q Consensus 568 ---~~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e----ILk~~L~~~----~l~----~dv 625 (807)
...++.+|++|+.. ++..+ ..|+|.. .+.+..|+..+|.+ +++++++.. ... .+.
T Consensus 263 ~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~ 339 (444)
T PRK15115 263 NRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTD 339 (444)
T ss_pred CceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHH
Confidence 11257888888853 32222 2244421 45677788888755 334444321 111 111
Q ss_pred CHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 626 dL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
-+..+....-.-+.++|++++++|+..+ ....|+.+++...+
T Consensus 340 a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 340 AMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 2555666553348899999999988665 44578888876544
No 213
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.1e-07 Score=99.90 Aligned_cols=69 Identities=30% Similarity=0.540 Sum_probs=50.3
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 426 DVAGIDEAVEELQELVRY-LKNPELFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~-L~~pe~~~~lG-l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
.|+|++++|..+.-.+.. ++...+-..+. --.|++||..||+|+|||-+||.+|+-++.||+.+.+..|
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 488999999887655542 22221111111 2358999999999999999999999999999998765443
No 214
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-07 Score=105.00 Aligned_cols=74 Identities=32% Similarity=0.578 Sum_probs=60.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-HHhhhh-hHHHHHHHHHH----HhCCCcEEEeccchhhhhhh
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-VLVGVG-SARIRDLFKRA----KVNKPSVIFIDEIDALATRR 533 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-~~vG~~-~~~ir~lF~~A----~~~~PsILfIDEID~L~~~r 533 (807)
+|||.||+|+|||+||+.||+-+++||...+|..+.. .|+|+. +..+..++..| .+.+..|+||||+|.+....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998764 477764 44556666655 23345699999999998543
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.58 E-value=4.8e-07 Score=100.58 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=56.4
Q ss_pred ccC-cccccHHHHHHHHHHHHHhcChhhhhhcCC-CCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEEeC--
Q 003619 423 KFS-DVAGIDEAVEELQELVRYLKNPELFDKMGI-KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------PFYQMAG-- 491 (807)
Q Consensus 423 ~F~-dVvG~devkeeL~eiV~~L~~pe~~~~lGl-~~p~gVLL~GPPGTGKT~LArALA~elg~-------pfi~Is~-- 491 (807)
-|+ ++.|++++++++.+.+.... .|. ...+.++|+||||||||+||++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 355 89999999877766655432 122 23467899999999999999999999876 8888877
Q ss_pred --chhHHHHhhhhhHHHHHHH
Q 003619 492 --SEFVEVLVGVGSARIRDLF 510 (807)
Q Consensus 492 --sel~~~~vG~~~~~ir~lF 510 (807)
+.+.+...+......+..|
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCCccCCcccCCHHHHHHH
Confidence 5554444444444444333
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.58 E-value=3.8e-07 Score=96.79 Aligned_cols=100 Identities=18% Similarity=0.325 Sum_probs=64.3
Q ss_pred CcccCccc-ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 421 GVKFSDVA-GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 421 ~v~F~dVv-G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
..+|++.. +.+..+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +..++.++.+++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 45777765 33333333443333332211 112489999999999999999999987 78889999888876
Q ss_pred HHhhhh---hHHHHHHHHHHHhCCCcEEEeccchhh
Q 003619 497 VLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 497 ~~vG~~---~~~ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.+.... ......++... ..+++|+|||++..
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 544321 11222344432 35779999999874
No 217
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.57 E-value=2.9e-07 Score=108.56 Aligned_cols=189 Identities=15% Similarity=0.134 Sum_probs=126.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhh--HHH--------HHHHHHHHhCCCcEEEeccc
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGS--ARI--------RDLFKRAKVNKPSVIFIDEI 526 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~sel~~~~vG~~~--~~i--------r~lF~~A~~~~PsILfIDEI 526 (807)
.||+|.|++|||||+++++++.-+. .||+.+..+--.+.++|... ..+ ..++.. ....||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~---Ah~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAE---ADGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceee---ccCCEEEecCc
Confidence 4899999999999999999999874 58887766554555555431 111 112222 22359999999
Q ss_pred hhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-----------CCCCceEEEeccCcc---CCCCcccCCCc
Q 003619 527 DALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNRR---DLLDPALLRPG 592 (807)
Q Consensus 527 D~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~-----------~~~~~VIVIAATN~p---d~LDpALlRpG 592 (807)
..+.+ .++..|++.|+.- .-+.++++|++-|.. ..|+++++.
T Consensus 103 n~~~~----------------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD-- 158 (584)
T PRK13406 103 ERLEP----------------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD-- 158 (584)
T ss_pred ccCCH----------------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--
Confidence 98653 3445566665531 223568888874432 348899999
Q ss_pred cccEEEeccCCCHHHH-------HHHHH--HHhhcCCCCCccCHHHHHhh--CCCC-cHHHHHHHHHHHHHHHHHhCCCc
Q 003619 593 RFDRKIRIRAPNAKGR-------TEILK--IHASKVKMSDSVDLSSYAKN--LPGW-TGARLAQLVQEAALVAVRKGHES 660 (807)
Q Consensus 593 RFdr~I~I~lPd~eeR-------~eILk--~~L~~~~l~~dvdL~~LA~~--T~Gf-SgaDL~~Lv~eAal~A~rr~~~~ 660 (807)
||+.++.+..|+..+. .+|.+ ..+.+..++.. .+..++.. ..|. |.+.-..+++-|..+|..++++.
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999998775532 23333 22333333222 23333332 2355 77888889999999999999999
Q ss_pred cCHHHHHHHHHHHhc
Q 003619 661 ILSSDMDDAVDRLTV 675 (807)
Q Consensus 661 It~edl~~Al~rv~~ 675 (807)
|+.+|+.+|+.-+..
T Consensus 238 V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 238 VEEEDLALAARLVLA 252 (584)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887764
No 218
>PRK08181 transposase; Validated
Probab=98.54 E-value=5.7e-07 Score=96.79 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=51.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~-~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
..+++|+||||||||+||.+++.++ |..+++++..++...+.... .......+.. ...+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEecccccc
Confidence 4589999999999999999999754 78889999888887653321 1222333333 2456799999998754
No 219
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.52 E-value=4.1e-08 Score=94.36 Aligned_cols=114 Identities=28% Similarity=0.411 Sum_probs=57.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc-hhH-HHHhhhhhHHHH-HHHHHHHh-CCCcEEEeccchhhhhhhcC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS-EFV-EVLVGVGSARIR-DLFKRAKV-NKPSVIFIDEIDALATRRQG 535 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s-el~-~~~vG~~~~~ir-~lF~~A~~-~~PsILfIDEID~L~~~r~~ 535 (807)
++||+|+||+|||++|+++|+..+..|..+.+. ++. ....|...-... ..|.-.+. --..|+++|||....++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappkt-- 78 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPKT-- 78 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HHH--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHHH--
Confidence 489999999999999999999999999988774 332 333332100000 00000000 002399999999866543
Q ss_pred cccCcchhhhhhhhHHHHHHHHHHHHhh----cC--CCCCCceEEEeccCccC-----CCCcccCCCccc
Q 003619 536 IFKDTTDHLYNAATQERETTLNQLLIEL----DG--FDTGKGVIFLAATNRRD-----LLDPALLRPGRF 594 (807)
Q Consensus 536 ~~~~~~d~~~~~~~~e~~~tLn~LL~eL----dg--~~~~~~VIVIAATN~pd-----~LDpALlRpGRF 594 (807)
+..+.+.+.+- ++ +.-++.++||||-|..+ .|+++++. ||
T Consensus 79 -----------------QsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 79 -----------------QSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -----------------HHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -----------------HHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 22333333331 11 23456789999999866 47888877 76
No 220
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.51 E-value=6.1e-07 Score=101.50 Aligned_cols=207 Identities=21% Similarity=0.273 Sum_probs=118.4
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV- 501 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~- 501 (807)
.++|.......+.+-+..+. .....++++|.+||||+++|+++.... +.||+.++|..+.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 46676666655554444332 234579999999999999999997654 5799999998764432211
Q ss_pred ----hhHH-------HHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc--CCC-
Q 003619 502 ----GSAR-------IRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD--GFD- 567 (807)
Q Consensus 502 ----~~~~-------ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd--g~~- 567 (807)
.... ....+ .....++|||||||.+.... +..+..++..-. ...
T Consensus 210 lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~ldei~~l~~~~-------------------q~~l~~~l~~~~~~~~~~ 267 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRF---VEADGGTLFLDEIGDISPMM-------------------QVRLLRAIQEREVQRVGS 267 (441)
T ss_pred hcCCCCCCcCCCCcCCCCce---eECCCCEEEEeccccCCHHH-------------------HHHHHHHHccCcEEeCCC
Confidence 0000 00111 22346799999999986542 222223332211 000
Q ss_pred ---CCCceEEEeccCccCCCCcccCCCccccE-------EEeccCCCHHHHHH----HHHHHhhcC----CCC----Ccc
Q 003619 568 ---TGKGVIFLAATNRRDLLDPALLRPGRFDR-------KIRIRAPNAKGRTE----ILKIHASKV----KMS----DSV 625 (807)
Q Consensus 568 ---~~~~VIVIAATN~pd~LDpALlRpGRFdr-------~I~I~lPd~eeR~e----ILk~~L~~~----~l~----~dv 625 (807)
...++.+|++|+.+-. .+..+|+|.. .+.+..|+..+|.+ ++++++... ... .+.
T Consensus 268 ~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (441)
T PRK10365 268 NQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ 344 (441)
T ss_pred CceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHH
Confidence 1124667878765321 2233444433 45667787777655 444444331 111 111
Q ss_pred CHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 003619 626 DLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAV 670 (807)
Q Consensus 626 dL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al 670 (807)
.+..+....---+.++|+++++.|+..+ ....|+.+++...+
T Consensus 345 a~~~L~~~~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 345 AMDLLIHYDWPGNIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 2445555442337899999999988664 44678888876554
No 221
>PRK06526 transposase; Provisional
Probab=98.51 E-value=3.1e-07 Score=98.01 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=50.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~-~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
.+.+++|+||||||||+||.+++.++ |..+..+++.++.+...... .......+.. ...+++|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 45689999999999999999998865 67777777777766543221 1122222322 2456799999999764
No 222
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.51 E-value=1e-06 Score=87.65 Aligned_cols=133 Identities=29% Similarity=0.444 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------C
Q 003619 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------------------P 485 (807)
Q Consensus 429 G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-----------------------p 485 (807)
|++++++.|.+.+.. -+.|..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 678888888776542 245668999999999999999999986521 2
Q ss_pred EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHH
Q 003619 486 FYQMAGSEFVEVLVGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLI 561 (807)
Q Consensus 486 fi~Is~sel~~~~vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~ 561 (807)
++.++...... .-....++++...+.. ....|++|||+|.+... ..|.||.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~----------------------a~NaLLK 124 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE----------------------AQNALLK 124 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH----------------------HHHHHHH
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH----------------------HHHHHHH
Confidence 33333221100 1123456666655532 23459999999987532 3477888
Q ss_pred hhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccC
Q 003619 562 ELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRA 602 (807)
Q Consensus 562 eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~l 602 (807)
.|+. .+.++++|.+|+.++.|.|.+++ |. ..+.+++
T Consensus 125 ~LEe--pp~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 125 TLEE--PPENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp HHHS--TTTTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred HhcC--CCCCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 8884 45678888889999999999998 64 4566654
No 223
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=5.2e-07 Score=100.13 Aligned_cols=133 Identities=24% Similarity=0.369 Sum_probs=93.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------EEEEeCchhHH--------------
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------------------------FYQMAGSEFVE-------------- 496 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p-------------------------fi~Is~sel~~-------------- 496 (807)
+.|.++||+||+|+||+++|+++|+.+.+. ++.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 678899999999999999999999866331 11121100000
Q ss_pred HH---------hhhhhHHHHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhh
Q 003619 497 VL---------VGVGSARIRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIEL 563 (807)
Q Consensus 497 ~~---------vG~~~~~ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eL 563 (807)
.- ..-+...+|++.+.+.. ....|++||++|.+.. ..-|.||..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----------------------~AaNaLLKtL 156 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV----------------------AAANALLKTL 156 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH----------------------HHHHHHHHHh
Confidence 00 00123456666555432 2334999999998753 2347888888
Q ss_pred cCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHH
Q 003619 564 DGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIH 615 (807)
Q Consensus 564 dg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~ 615 (807)
+ +++.++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 157 E--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 157 E--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred c--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8 466788888999999999999998 75 78999999999998888654
No 224
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.50 E-value=1.1e-06 Score=95.18 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=120.5
Q ss_pred ccccccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE--
Q 003619 409 RSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-- 486 (807)
Q Consensus 409 ~~~~~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf-- 486 (807)
......++++.++-.+.|+++++++...+.++...-.. .+.|+|||||||||....+.|+.+..|-
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~l------------Ph~L~YgPPGtGktsti~a~a~~ly~~~~~ 92 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGL------------PHLLFYGPPGTGKTSTILANARDFYSPHPT 92 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCC------------CcccccCCCCCCCCCchhhhhhhhcCCCCc
Confidence 34445677888889999999999998888776332221 2789999999999999999999987651
Q ss_pred ----EEEeCchhHHHHhhhh-hHHHHHHHHHHHh-------CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHH
Q 003619 487 ----YQMAGSEFVEVLVGVG-SARIRDLFKRAKV-------NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERET 554 (807)
Q Consensus 487 ----i~Is~sel~~~~vG~~-~~~ir~lF~~A~~-------~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~ 554 (807)
..++.++= .|-. .+..-..|..++. ..+..++|||+|++....+
T Consensus 93 ~~m~lelnaSd~----rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------------------- 148 (360)
T KOG0990|consen 93 TSMLLELNASDD----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------------------- 148 (360)
T ss_pred hhHHHHhhccCc----cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH--------------------
Confidence 11111110 1111 1122234444442 2567999999999765432
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhh
Q 003619 555 TLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKN 633 (807)
Q Consensus 555 tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~ 633 (807)
|+|-+.++.+.. ++.++.-+|.+..+.|++++ |+. .+.+.+.+..+-...+.++..........+ ...+++.
T Consensus 149 --nALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~ 221 (360)
T KOG0990|consen 149 --NALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL 221 (360)
T ss_pred --HHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH
Confidence 222234444433 34444568999999999987 654 345666666666667777765444332222 2223333
Q ss_pred CCCCcHHHHHHHHHHHHHHHH
Q 003619 634 LPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 634 T~GfSgaDL~~Lv~eAal~A~ 654 (807)
+..|++..++.....+.
T Consensus 222 ----s~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 222 ----SVGDMRVALNYLQSILK 238 (360)
T ss_pred ----hHHHHHHHHHHHHHHHH
Confidence 34466666665544433
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=1.6e-06 Score=95.69 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=92.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEeCchhHHHHhhhhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP------------------------FYQMAGSEFVEVLVGVGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p------------------------fi~Is~sel~~~~vG~~~~~ir~lF~ 511 (807)
+.+..+||+||+|+||+++|+++|+.+-+. ++.+...+ + ..-+...+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHHH
Confidence 456789999999999999999999865221 22221100 0 0123456676655
Q ss_pred HHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 512 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
.+.. ....|++||++|.+.. ...|.||..++. ++.++++|.+|+.++.|.|.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~----------------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE----------------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH----------------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchH
Confidence 5432 2345999999999753 234788888884 66778888889999999999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHH
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIH 615 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~ 615 (807)
+++ | ...+.+++|+.++..+.|...
T Consensus 154 I~S--R-C~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--R-CQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--h-ceEEeCCCCCHHHHHHHHHHH
Confidence 998 6 468899999999888877754
No 226
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.48 E-value=2.3e-06 Score=99.84 Aligned_cols=211 Identities=21% Similarity=0.305 Sum_probs=119.5
Q ss_pred ccccCCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe-C
Q 003619 413 EARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-G 491 (807)
Q Consensus 413 ~~~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is-~ 491 (807)
..+.+...+.+.+||+-+.+-.++++.++..... +....+-+||+||||||||++++.||++++..+..-. .
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 4456677788999999888777777777764211 2233446888999999999999999999988776532 2
Q ss_pred chhH------HHHhhhh---------hHHHHHH-HHHHHh-----------CCCcEEEeccchhhhhhhcCcccCcchhh
Q 003619 492 SEFV------EVLVGVG---------SARIRDL-FKRAKV-----------NKPSVIFIDEIDALATRRQGIFKDTTDHL 544 (807)
Q Consensus 492 sel~------~~~vG~~---------~~~ir~l-F~~A~~-----------~~PsILfIDEID~L~~~r~~~~~~~~d~~ 544 (807)
..+. ..+.+.. .....++ +..++. ..+.||+|||+-.+....
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----------- 148 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----------- 148 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----------
Confidence 1110 1111110 0111111 111111 245699999998654321
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCCceEEEec-cC------cc--------CCCCcccCCCccccEEEeccCCCHHHHH
Q 003619 545 YNAATQERETTLNQLLIELDGFDTGKGVIFLAA-TN------RR--------DLLDPALLRPGRFDRKIRIRAPNAKGRT 609 (807)
Q Consensus 545 ~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAA-TN------~p--------d~LDpALlRpGRFdr~I~I~lPd~eeR~ 609 (807)
.......+.+++.. .....+++|.+ ++ .. ..+++.++...+ -..|.|.+-...--+
T Consensus 149 ----~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~-i~~I~FNpIa~T~mk 219 (519)
T PF03215_consen 149 ----TSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPG-ITRIKFNPIAPTFMK 219 (519)
T ss_pred ----HHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCC-ceEEEecCCCHHHHH
Confidence 12233333443332 11115566555 11 11 134555554223 357888877766555
Q ss_pred HHHHHHhhcC--------CCCCccC-HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003619 610 EILKIHASKV--------KMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAV 654 (807)
Q Consensus 610 eILk~~L~~~--------~l~~dvd-L~~LA~~T~GfSgaDL~~Lv~eAal~A~ 654 (807)
+.|+..+... ......+ ++.|+..+.| ||+.+++.-...+.
T Consensus 220 KaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 220 KALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 5555444332 1122222 6778777655 99999998887776
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.48 E-value=1.1e-06 Score=89.11 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=91.5
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CEEEEeC-chhH----HHH-
Q 003619 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PFYQMAG-SEFV----EVL- 498 (807)
Q Consensus 428 vG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~---pfi~Is~-sel~----~~~- 498 (807)
+|.++..+.|.+++.. .+...++|+||.|+|||+|++.+.....- ..+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 4666666666655432 12457999999999999999999998832 2222221 1100 000
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhCC-CcEEEeccchhhh-hhhcCcccCcchhhhhh
Q 003619 499 ------------V-----------------GVGSARIRDLFKRAKVNK-PSVIFIDEIDALA-TRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 499 ------------v-----------------G~~~~~ir~lF~~A~~~~-PsILfIDEID~L~-~~r~~~~~~~~d~~~~~ 547 (807)
. ......+..+++...... ..||+|||++.+. ....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~------------- 136 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE------------- 136 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------------
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------------
Confidence 0 012234555555554432 3799999999987 2210
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCce-EEEeccCc--c-C--CCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcC-C
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGV-IFLAATNR--R-D--LLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKV-K 620 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~V-IVIAATN~--p-d--~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~-~ 620 (807)
....+..+...++......++ +|+++++. . + .-...+. +|+.. +.+++.+.++..++++..+... .
T Consensus 137 ----~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~ 209 (234)
T PF01637_consen 137 ----DKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIK 209 (234)
T ss_dssp ----THHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC--
T ss_pred ----hHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhc
Confidence 012222333333332223333 44444432 1 1 1122333 37776 9999999999999999987665 1
Q ss_pred C-CCccCHHHHHhhCCCCcHHHHH
Q 003619 621 M-SDSVDLSSYAKNLPGWTGARLA 643 (807)
Q Consensus 621 l-~~dvdL~~LA~~T~GfSgaDL~ 643 (807)
+ .++.+++.+...+.| .|+-|.
T Consensus 210 ~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 210 LPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp ----HHHHHHHHHHHTT--HHHHH
T ss_pred ccCCHHHHHHHHHHhCC-CHHHHh
Confidence 1 245557778887766 455554
No 228
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=2.4e-07 Score=109.09 Aligned_cols=168 Identities=22% Similarity=0.252 Sum_probs=109.6
Q ss_pred ccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccc-cCCCCCcccCccc-ccH
Q 003619 354 KFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEAR-VDGSTGVKFSDVA-GID 431 (807)
Q Consensus 354 ~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~F~dVv-G~d 431 (807)
-.+|.+|.|.+.+|+.|-......+..+..++.-..+.-....+.|+..+..+--....... ..-...+.|+||. .+.
T Consensus 397 v~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP 476 (716)
T KOG0058|consen 397 VLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYP 476 (716)
T ss_pred hhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecC
Confidence 34678999999999999999888888888887666666666666666655433222211111 1234567788775 333
Q ss_pred HHH--HHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCC--------------
Q 003619 432 EAV--EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----------GVP-------------- 485 (807)
Q Consensus 432 evk--eeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----------g~p-------------- 485 (807)
.-. .-++++ .+.++|+..+-|+||+|.|||++|..+-+-. |.|
T Consensus 477 ~Rp~~~Vlk~l-----------sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 477 TRPDVPVLKNL-----------SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred CCCCchhhcCc-----------eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 211 122211 3567889999999999999999999997722 111
Q ss_pred ------EEE--------------------------EeCchhHHHH-------hhh------hhHHHHHHHHHHHhCCCcE
Q 003619 486 ------FYQ--------------------------MAGSEFVEVL-------VGV------GSARIRDLFKRAKVNKPSV 520 (807)
Q Consensus 486 ------fi~--------------------------Is~sel~~~~-------vG~------~~~~ir~lF~~A~~~~PsI 520 (807)
++. .|+.+|+..+ +|+ +.++.|-++.+|.-.+|+|
T Consensus 546 ~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V 625 (716)
T KOG0058|consen 546 LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV 625 (716)
T ss_pred eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE
Confidence 110 1223333321 122 4677888999999999999
Q ss_pred EEeccchhhhhh
Q 003619 521 IFIDEIDALATR 532 (807)
Q Consensus 521 LfIDEID~L~~~ 532 (807)
|+|||+.+-.+.
T Consensus 626 LILDEATSALDa 637 (716)
T KOG0058|consen 626 LILDEATSALDA 637 (716)
T ss_pred EEEechhhhcch
Confidence 999999876543
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.3e-06 Score=93.14 Aligned_cols=73 Identities=27% Similarity=0.469 Sum_probs=52.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhhhH-HHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVGSA-RIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~~~-~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
.+.+++|+||||||||+||-|+++++ |.+++.++.++++..+...... .....+... .....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 34589999999999999999999876 7899999999998775443221 111111111 2455699999998753
No 230
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.42 E-value=8.8e-07 Score=96.99 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=64.8
Q ss_pred CcccCcccccH-HHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 421 GVKFSDVAGID-EAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 421 ~v~F~dVvG~d-evkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
..+|+++...+ +....+.....++.... . .+.++|++|+||+|||||+|+.|+|+++ |.++..+..++|..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~---~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYP---P--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhh---c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 46788776433 22223333333332211 1 1245799999999999999999999987 78888888888876
Q ss_pred HHhhhh-hHHHHHHHHHHHhCCCcEEEeccchhh
Q 003619 497 VLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 497 ~~vG~~-~~~ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.+.... .......+... ....+|+|||+..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 654321 11233334332 35669999999763
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.41 E-value=9.9e-06 Score=86.59 Aligned_cols=176 Identities=19% Similarity=0.210 Sum_probs=115.7
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CE-------
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV---PF------- 486 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~---pf------- 486 (807)
++..+-+++.+.+.++..+.|+.+...-.. .++++|||+|+||-|.+.++-+++.. +=
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~~~d~------------PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSSTGDF------------PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcccCCC------------CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 444566788888988888888766442111 26899999999999999999887621 11
Q ss_pred -------------------EEEeCchhHHHHhhh-hhHHHHHHHHHHHhCC---------CcEEEeccchhhhhhhcCcc
Q 003619 487 -------------------YQMAGSEFVEVLVGV-GSARIRDLFKRAKVNK---------PSVIFIDEIDALATRRQGIF 537 (807)
Q Consensus 487 -------------------i~Is~sel~~~~vG~-~~~~ir~lF~~A~~~~---------PsILfIDEID~L~~~r~~~~ 537 (807)
+.++.|+ .|. ..-.++++++...+.+ -.+++|.|+|.|....+
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ--- 144 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ--- 144 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH---
Confidence 1122222 121 1223455555443332 24999999999875432
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhh
Q 003619 538 KDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 538 ~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
.. |-..|+.+. +++.+|..+|....+-+++++ | ...|.++.|+.++...++...+.
T Consensus 145 ----------------~a---LRRTMEkYs--~~~RlIl~cns~SriIepIrS--R-Cl~iRvpaps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 145 ----------------HA---LRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--R-CLFIRVPAPSDEEITSVLSKVLK 200 (351)
T ss_pred ----------------HH---HHHHHHHHh--cCceEEEEecCcccchhHHhh--h-eeEEeCCCCCHHHHHHHHHHHHH
Confidence 12 222233333 345677778988888889987 5 46789999999999999999988
Q ss_pred cCCCCCccC-HHHHHhhCCC
Q 003619 618 KVKMSDSVD-LSSYAKNLPG 636 (807)
Q Consensus 618 ~~~l~~dvd-L~~LA~~T~G 636 (807)
+.++.-..+ +..+|+.+.|
T Consensus 201 kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 201 KEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HhcccCcHHHHHHHHHHhcc
Confidence 776663333 6677777655
No 232
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=2.6e-06 Score=80.96 Aligned_cols=70 Identities=24% Similarity=0.285 Sum_probs=49.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
+.++|+||.|+|||++++.+++... ..++++++.+.......... +.+.+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4689999999999999999999876 78888888776543211111 2233333222356799999999863
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.39 E-value=1.3e-06 Score=93.42 Aligned_cols=74 Identities=30% Similarity=0.471 Sum_probs=52.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh-hhHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV-GSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~-~~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
..+.+++|+||||||||+|+.+++..+ |..+.++++.++...+... ....+...+... ...+++++|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 445689999999999999999997654 7788888888777554322 112233444443 3567799999998753
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.39 E-value=3.2e-07 Score=88.31 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=56.2
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeCchhHHHHhhhhhH
Q 003619 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFVEVLVGVGSA 504 (807)
Q Consensus 428 vG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~sel~~~~vG~~~~ 504 (807)
+|.....+++++-+..+.. ...+|+|+|++||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4667777778777776542 234799999999999999999998764 467777776533
Q ss_pred HHHHHHHHHHhCCCcEEEeccchhhhhh
Q 003619 505 RIRDLFKRAKVNKPSVIFIDEIDALATR 532 (807)
Q Consensus 505 ~ir~lF~~A~~~~PsILfIDEID~L~~~ 532 (807)
.++++.+ ...+|+|+|+|.+...
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE 84 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH
Confidence 3344443 5669999999997643
No 235
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=2.3e-06 Score=94.83 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=98.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC------------------------CEEEEeCchhHHHHhhhhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV------------------------PFYQMAGSEFVEVLVGVGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~------------------------pfi~Is~sel~~~~vG~~~~~ir~lF~ 511 (807)
+.+..+||+||+|+||+++|.++|+.+-+ .++.+....- . ..-+...+|++.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHHH
Confidence 56778999999999999999999986522 1122211000 0 0123345666655
Q ss_pred HHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 512 RAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 512 ~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
.+.. ....|++||++|.+.. ..-|.||..++. ++.++++|..|+.++.|.|.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~----------------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD----------------------AAANALLKTLEE--PPENTWFFLACREPARLLAT 154 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH----------------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHH
Confidence 5432 3445999999999753 234788888884 56778888889999999999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCC
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPG 636 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~G 636 (807)
+++ |.. .+.+++|+.++..+.|.... +.+. .+...+++.+.|
T Consensus 155 IrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~~-~~a~~~~~la~G 196 (334)
T PRK07993 155 LRS--RCR-LHYLAPPPEQYALTWLSREV---TMSQ-DALLAALRLSAG 196 (334)
T ss_pred HHh--ccc-cccCCCCCHHHHHHHHHHcc---CCCH-HHHHHHHHHcCC
Confidence 998 754 68999999888877775431 2222 224455666666
No 236
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.39 E-value=4.2e-07 Score=105.72 Aligned_cols=205 Identities=23% Similarity=0.317 Sum_probs=123.6
Q ss_pred cccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh--cCCCEEEEeCchhHHH-----Hhh
Q 003619 428 AGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE--AGVPFYQMAGSEFVEV-----LVG 500 (807)
Q Consensus 428 vG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e--lg~pfi~Is~sel~~~-----~vG 500 (807)
.+.+...+.+...+..+... .-.+||.|.|||||-.+++++-.. ...||+.+||..+-+. ++|
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~----------~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFG 385 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT----------DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFG 385 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc----------CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhc
Confidence 35555555555554443322 237999999999999999999664 4679999999765543 333
Q ss_pred hhhH--------HHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-----CCC
Q 003619 501 VGSA--------RIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-----GFD 567 (807)
Q Consensus 501 ~~~~--------~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd-----g~~ 567 (807)
.... ..+..+++|. -..+|+|||..+.-. .+..+.+.|++-. +-.
T Consensus 386 y~~GafTga~~kG~~g~~~~A~---gGtlFldeIgd~p~~-------------------~Qs~LLrVl~e~~v~p~g~~~ 443 (606)
T COG3284 386 YVAGAFTGARRKGYKGKLEQAD---GGTLFLDEIGDMPLA-------------------LQSRLLRVLQEGVVTPLGGTR 443 (606)
T ss_pred cCccccccchhccccccceecC---CCccHHHHhhhchHH-------------------HHHHHHHHHhhCceeccCCcc
Confidence 2222 2222333332 348999999886532 3344455555422 222
Q ss_pred CCCceEEEeccCccCCCCcccCCCccccEE-------EeccCCCHHHHHH---HHHHHhhcCC-----CCCccCHHHHHh
Q 003619 568 TGKGVIFLAATNRRDLLDPALLRPGRFDRK-------IRIRAPNAKGRTE---ILKIHASKVK-----MSDSVDLSSYAK 632 (807)
Q Consensus 568 ~~~~VIVIAATN~pd~LDpALlRpGRFdr~-------I~I~lPd~eeR~e---ILk~~L~~~~-----l~~dvdL~~LA~ 632 (807)
..=.|-||+||+++-. .|.+.|||... ..+.+|...+|.+ .|.+++.... ++.+.-..-++.
T Consensus 444 ~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 444 IKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY 520 (606)
T ss_pred eeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC
Confidence 2235889999998655 67778888763 3445677777655 4444443221 222221223455
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003619 633 NLPGWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVD 671 (807)
Q Consensus 633 ~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~ 671 (807)
..+| +.++|.++++.++..+ +...|...|+...+-
T Consensus 521 ~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l~ 555 (606)
T COG3284 521 RWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPELL 555 (606)
T ss_pred CCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHHH
Confidence 5667 8899999999988776 444555555555444
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.6e-06 Score=91.18 Aligned_cols=152 Identities=20% Similarity=0.291 Sum_probs=97.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC---------------------EEEEe--CchhHHH-HhhhhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---------------------FYQMA--GSEFVEV-LVGVGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p---------------------fi~Is--~sel~~~-~vG~~~~~ir~lF~ 511 (807)
+.|..+||+||+|+||+++|.++|+.+-+. ++.+. ..+--.+ ...-+...+|++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 556789999999999999999999865221 11121 0000000 00112445666665
Q ss_pred HHHhC----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcc
Q 003619 512 RAKVN----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 512 ~A~~~----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpA 587 (807)
.+... ...|++||++|.+.. ...|.||..++. ++.++++|..|+.++.|.|.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~----------------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR----------------------AACNALLKTLEE--PSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH----------------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchH
Confidence 55332 235999999999753 234788888884 45567777788889999999
Q ss_pred cCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcH
Q 003619 588 LLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTG 639 (807)
Q Consensus 588 LlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSg 639 (807)
+++ |. ..+.+++|+.++-.+.|... ..+ ..+...++....|..+
T Consensus 160 IrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 160 IRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred HHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 998 74 68889999998877777542 222 1223455666666333
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.38 E-value=1.9e-06 Score=95.33 Aligned_cols=69 Identities=22% Similarity=0.446 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh---hHHHHHHHHHHHhCCCcEEEeccchhh
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG---SARIRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~---~~~ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.+++|+||+|||||+|+.|+|+++ +..+++++..++...+.... .......+.. .....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 689999999999999999999986 78899999988877653321 1111111222 235579999999774
No 239
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.35 E-value=1.5e-05 Score=85.87 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=68.0
Q ss_pred cCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCC
Q 003619 581 RDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD-LSSYAKNLPGWTGARLAQLVQEAALVAVRKGHE 659 (807)
Q Consensus 581 pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd-L~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~ 659 (807)
|.-+|-.++. |. ..|...+++.++.++||+..+......-+.| ++.+......-+-+-.-+++..|.+.|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3346667776 54 4677778899999999999987655543333 444444444556677788999999999999989
Q ss_pred ccCHHHHHHHHHHHhc
Q 003619 660 SILSSDMDDAVDRLTV 675 (807)
Q Consensus 660 ~It~edl~~Al~rv~~ 675 (807)
.+..+|+..+..-...
T Consensus 416 ~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLD 431 (454)
T ss_pred eeehhHHHHHHHHHhh
Confidence 9999999999876654
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.32 E-value=9e-07 Score=89.55 Aligned_cols=71 Identities=31% Similarity=0.537 Sum_probs=49.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhhh-hHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGVG-SARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~~-~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
..+.+++|+||||||||+||.++++++ +.++.+++.+++++.+.... .......+.... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 345699999999999999999999866 88999999999888754321 112233444333 456999999965
No 241
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=7.5e-06 Score=90.21 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------CEEEEeCchhHHHHhhhhhHHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------------------PFYQMAGSEFVEVLVGVGSARIRDLFKR 512 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~-----------------------pfi~Is~sel~~~~vG~~~~~ir~lF~~ 512 (807)
+.+..+||+||.|+||+.+|+++|+.+-+ .++.+.... .+ ..-+...+|++.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EG--KSITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CC--CcCCHHHHHHHHHH
Confidence 56778999999999999999999986521 122222110 00 00123455665544
Q ss_pred HHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCccc
Q 003619 513 AKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPAL 588 (807)
Q Consensus 513 A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpAL 588 (807)
+.. ....|++||++|.+.. ..-|.||..++. ++.++++|..|+.++.|.|.+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~----------------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE----------------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH----------------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHH
Confidence 432 2345999999999753 234788888884 566788888899999999999
Q ss_pred CCCccccEEEeccCCCHHHHHHHHHH
Q 003619 589 LRPGRFDRKIRIRAPNAKGRTEILKI 614 (807)
Q Consensus 589 lRpGRFdr~I~I~lPd~eeR~eILk~ 614 (807)
++ |. ..+.+++|+.++..+.|..
T Consensus 156 ~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 156 VS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred Hh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 98 74 6889999999888887754
No 242
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=5.2e-06 Score=100.92 Aligned_cols=129 Identities=35% Similarity=0.399 Sum_probs=87.6
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH-----
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV----- 497 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~----- 497 (807)
.|+|++++...+-+.|..-+.. ..+. ++.-.+||.||.|+|||-||+++|..+ .-.++.+++++|.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g-l~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG-LKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc-cCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccC
Confidence 5789999998888888764321 1111 356679999999999999999999977 467899999986652
Q ss_pred ----HhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC------
Q 003619 498 ----LVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD------ 567 (807)
Q Consensus 498 ----~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~------ 567 (807)
|+|. .....+.+..+....+||+|||||.-.. ..++.|++.+|...
T Consensus 639 sp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh~----------------------~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 639 SPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAHP----------------------DVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred CCcccccc--hhHHHHHHHHhcCCceEEEEechhhcCH----------------------HHHHHHHHHHhcCccccCCC
Confidence 2222 2233455555666678999999997321 23444555554321
Q ss_pred ---CCCceEEEeccCccC
Q 003619 568 ---TGKGVIFLAATNRRD 582 (807)
Q Consensus 568 ---~~~~VIVIAATN~pd 582 (807)
.-+++|||.|+|.-.
T Consensus 695 r~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGS 712 (898)
T ss_pred cEeeccceEEEEecccch
Confidence 124689999988633
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.24 E-value=5.8e-06 Score=88.83 Aligned_cols=68 Identities=31% Similarity=0.373 Sum_probs=47.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
..+++|+||||||||+|+.|+|+++ +..+++++..++...+.... ......+.. ....++|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 5689999999999999999999975 57788888777665432221 112222222 24567999999954
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=6.1e-06 Score=77.32 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEeCchhH------HHHh---h------hhhHHHHHHHH-HH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA--------GVPFYQMAGSEFV------EVLV---G------VGSARIRDLFK-RA 513 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el--------g~pfi~Is~sel~------~~~v---G------~~~~~ir~lF~-~A 513 (807)
.+.++|+||||+|||++++.+++.. ..+++.++++... .... + .....+.+.+. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999987 7788888775433 1111 0 11222223333 33
Q ss_pred HhCCCcEEEeccchhhh
Q 003619 514 KVNKPSVIFIDEIDALA 530 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~ 530 (807)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 33444599999999974
No 245
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.17 E-value=1.8e-06 Score=103.92 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=76.1
Q ss_pred CcccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc--ccccCCCCCcccCcc
Q 003619 350 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKA--EARVDGSTGVKFSDV 427 (807)
Q Consensus 350 ~~~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~F~dV 427 (807)
|++--..|.+|.|.+.++......+..++.-++.++...+.......+..++.+..+...... .........++|++|
T Consensus 398 G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nv 477 (709)
T COG2274 398 GAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENV 477 (709)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEE
Confidence 444555678999999999999988888888888776555544433334434333222211111 122344456788887
Q ss_pred c-ccHHHH-HHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 428 A-GIDEAV-EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 428 v-G~devk-eeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
. .+.... ..|.++ .+.++++..+.|.|++|||||||+|.+.+
T Consensus 478 sf~y~~~~~~vL~~i-----------sL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 478 SFRYGPDDPPVLEDL-----------SLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred EEEeCCCCcchhhce-----------eEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5 222211 223221 34566777799999999999999999998
No 246
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.14 E-value=9.7e-05 Score=78.50 Aligned_cols=183 Identities=19% Similarity=0.265 Sum_probs=115.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeCch-----hHHHHhhh------------hhHHHHHHHHHHHh-CCC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSE-----FVEVLVGV------------GSARIRDLFKRAKV-NKP 518 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~se-----l~~~~vG~------------~~~~ir~lF~~A~~-~~P 518 (807)
-+.++|+.|+|||++.|++....+ ...++++... +...++.+ .++.-+.+.+..+. ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 467899999999999997776553 2334444332 22222221 12222333333333 456
Q ss_pred cEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhc-CCCCCCceEEEeccCccCCCCcccCCC------
Q 003619 519 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELD-GFDTGKGVIFLAATNRRDLLDPALLRP------ 591 (807)
Q Consensus 519 sILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLd-g~~~~~~VIVIAATN~pd~LDpALlRp------ 591 (807)
-++++||++.+.... ...+ .++.+++ .....-.++.|+-.. |.+.++.|
T Consensus 133 v~l~vdEah~L~~~~-------------------le~L-rll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~ 188 (269)
T COG3267 133 VVLMVDEAHDLNDSA-------------------LEAL-RLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELE 188 (269)
T ss_pred eEEeehhHhhhChhH-------------------HHHH-HHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhh
Confidence 899999999876432 1122 2233322 222233466666432 33322221
Q ss_pred ccccEEEeccCCCHHHHHHHHHHHhhcCCCC----CccCHHHHHhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 003619 592 GRFDRKIRIRAPNAKGRTEILKIHASKVKMS----DSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGHESILSSDMD 667 (807)
Q Consensus 592 GRFdr~I~I~lPd~eeR~eILk~~L~~~~l~----~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~ 667 (807)
-|++..|++++.+.++-...++++++....+ .+.-+..++..+.| .|+-+.+++..|...|...+.+.|+...+.
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 2777778889999998899999998775443 33336677777777 799999999999999999998888877654
No 247
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2e-06 Score=97.27 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=77.4
Q ss_pred cccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccc--cccccccccCCCCCcccCccc-ccHHH
Q 003619 357 EFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDF--SRSKAEARVDGSTGVKFSDVA-GIDEA 433 (807)
Q Consensus 357 ~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~F~dVv-G~dev 433 (807)
+++++|+.+-++.|+.++..++.++...++..+..---...-+++...+.. +...+........++.|++|. +++.-
T Consensus 471 q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~ 550 (790)
T KOG0056|consen 471 QTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG 550 (790)
T ss_pred ccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC
Confidence 457888888899999999999999988876665432222222333222211 111122223344567888876 77777
Q ss_pred HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 434 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 434 keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
|.-|+++ .+-+.+++.+-|+||+|.|||++.|.+.+-
T Consensus 551 k~vl~di-----------sF~v~pGktvAlVG~SGaGKSTimRlLfRf 587 (790)
T KOG0056|consen 551 KPVLSDI-----------SFTVQPGKTVALVGPSGAGKSTIMRLLFRF 587 (790)
T ss_pred Cceeecc-----------eEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence 7666654 345678889999999999999999999873
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.12 E-value=9e-06 Score=77.69 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=48.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh----------------------hh--hhHHHHHHHHHH
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV----------------------GV--GSARIRDLFKRA 513 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v----------------------G~--~~~~ir~lF~~A 513 (807)
++|+||||+|||+++..++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776654332110 00 011112234455
Q ss_pred HhCCCcEEEeccchhhhhh
Q 003619 514 KVNKPSVIFIDEIDALATR 532 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~~~ 532 (807)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678889999999998754
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8.7e-06 Score=89.93 Aligned_cols=131 Identities=24% Similarity=0.335 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-------------------------CEEEEeCchhHHHHhh-----hhhHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------------------PFYQMAGSEFVEVLVG-----VGSAR 505 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~-------------------------pfi~Is~sel~~~~vG-----~~~~~ 505 (807)
+.+..+||+||+|+|||++|+++|+.+.+ .|+.++...-. .-.| -+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 66778999999999999999999997532 13333321000 0001 13456
Q ss_pred HHHHHHHHHh----CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q 003619 506 IRDLFKRAKV----NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (807)
Q Consensus 506 ir~lF~~A~~----~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~p 581 (807)
+|++.+.+.. ....|++||+++.+... ..+.++..++... .++.+|.+|+.+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~----------------------a~naLLk~LEep~--~~~~~Ilvth~~ 153 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ----------------------AANSLLKVLEEPP--PQVVFLLVSHAA 153 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH----------------------HHHHHHHHHHhCc--CCCEEEEEeCCh
Confidence 7777766643 23459999999987432 2345666666443 345566688888
Q ss_pred CCCCcccCCCccccEEEeccCCCHHHHHHHHHH
Q 003619 582 DLLDPALLRPGRFDRKIRIRAPNAKGRTEILKI 614 (807)
Q Consensus 582 d~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~ 614 (807)
+.+.+.+++ | ...+.|++|+.++..+.|..
T Consensus 154 ~~ll~ti~S--R-c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 154 DKVLPTIKS--R-CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HhChHHHHH--H-hhhhcCCCCCHHHHHHHHHh
Confidence 899998887 5 46888999999888777754
No 250
>PF05729 NACHT: NACHT domain
Probab=98.11 E-value=2.9e-05 Score=74.86 Aligned_cols=142 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--------CC-EEEEeCchhHHH---------Hhh---hhhHHHHH-HHHHHHhCC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAG--------VP-FYQMAGSEFVEV---------LVG---VGSARIRD-LFKRAKVNK 517 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg--------~p-fi~Is~sel~~~---------~vG---~~~~~ir~-lF~~A~~~~ 517 (807)
-++|+|+||+|||++++.++..+. .+ ++.+++.+.... ... ........ .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987551 12 223333322211 111 11111122 122234456
Q ss_pred CcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEE
Q 003619 518 PSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRK 597 (807)
Q Consensus 518 PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~ 597 (807)
..+|+||.+|.+...... .........+.+++.. ....+-.++|.+.+.....+...+.. ...
T Consensus 82 ~~llilDglDE~~~~~~~-----------~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----------QERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred ceEEEEechHhcccchhh-----------hHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 679999999998753211 0011122233344332 11222333333322222222222322 157
Q ss_pred EeccCCCHHHHHHHHHHHhhc
Q 003619 598 IRIRAPNAKGRTEILKIHASK 618 (807)
Q Consensus 598 I~I~lPd~eeR~eILk~~L~~ 618 (807)
+.+...+.++..++++.+++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EEECCCCHHHHHHHHHHHhhc
Confidence 888899999999999988764
No 251
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.10 E-value=1.3e-05 Score=89.90 Aligned_cols=141 Identities=22% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEEeCchhHHHHhhh------hhHHHHHHHHHHHhCCCcEEEeccch
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-PFYQMAGSEFVEVLVGV------GSARIRDLFKRAKVNKPSVIFIDEID 527 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg~-pfi~Is~sel~~~~vG~------~~~~ir~lF~~A~~~~PsILfIDEID 527 (807)
..+|+|++||||+|+|||+|+-.+...+.. .-..+.-.+|....... ....+..+.+.. .....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 467999999999999999999999887743 11222223333221111 111222222222 2334499999987
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc-cCCCCcccCCCccccEEEeccCCCHH
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIRIRAPNAK 606 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~-pd~LDpALlRpGRFdr~I~I~lPd~e 606 (807)
--- -.....+..|+..+- ..++++|+|+|+ |+.|-+.=+...+|-
T Consensus 138 V~D-------------------iaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Fl----------- 183 (362)
T PF03969_consen 138 VTD-------------------IADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFL----------- 183 (362)
T ss_pred ccc-------------------hhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHH-----------
Confidence 521 111233445555443 367899999997 444322222212331
Q ss_pred HHHHHHHHHhhcCCCCCccCHHHH
Q 003619 607 GRTEILKIHASKVKMSDSVDLSSY 630 (807)
Q Consensus 607 eR~eILk~~L~~~~l~~dvdL~~L 630 (807)
--.++|+.++.-+.+....|....
T Consensus 184 p~I~~l~~~~~vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 184 PFIDLLKRRCDVVELDGGVDYRRR 207 (362)
T ss_pred HHHHHHHhceEEEEecCCCchhhh
Confidence 124567777776777777776554
No 252
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.10 E-value=5.7e-06 Score=89.18 Aligned_cols=139 Identities=24% Similarity=0.310 Sum_probs=75.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC-C--EEEEeCchhHHHHhhhhhHHHHHHHHHH-----------HhCCCcEEEe
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV-P--FYQMAGSEFVEVLVGVGSARIRDLFKRA-----------KVNKPSVIFI 523 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~-p--fi~Is~sel~~~~vG~~~~~ir~lF~~A-----------~~~~PsILfI 523 (807)
.+++||+||+|||||.+++.+-+...- . ...++++... +...++..++.. ..+..+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 458999999999999999988776542 2 2344444321 112222222211 1123459999
Q ss_pred ccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC-------CCceEEEeccCccC---CCCcccCCCcc
Q 003619 524 DEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-------GKGVIFLAATNRRD---LLDPALLRPGR 593 (807)
Q Consensus 524 DEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~-------~~~VIVIAATN~pd---~LDpALlRpGR 593 (807)
||++.-....- +.+.....+.+++..---++. -.++.++||+|... .+++.++| .
T Consensus 107 DDlN~p~~d~y-------------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-------------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-------------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-------------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99987543321 112223445555443211121 13577888888533 36677776 4
Q ss_pred ccEEEeccCCCHHHHHHHHHHHhhc
Q 003619 594 FDRKIRIRAPNAKGRTEILKIHASK 618 (807)
Q Consensus 594 Fdr~I~I~lPd~eeR~eILk~~L~~ 618 (807)
| ..+.++.|+.+....|+...+..
T Consensus 172 f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 172 F-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E-EEEE----TCCHHHHHHHHHHHH
T ss_pred e-EEEEecCCChHHHHHHHHHHHhh
Confidence 4 48899999999999988766653
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.10 E-value=1.8e-05 Score=92.06 Aligned_cols=223 Identities=17% Similarity=0.229 Sum_probs=126.5
Q ss_pred ccCcccccHHHHHHHHHHHHHhcChhhh--hhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 003619 423 KFSDVAGIDEAVEELQELVRYLKNPELF--DKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (807)
Q Consensus 423 ~F~dVvG~devkeeL~eiV~~L~~pe~~--~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG 500 (807)
=|..|.|.+.+|.-+. +..+-.-... ....++..-+|+|+|.||||||.+.+++++-+-..++. ++..- .-.|
T Consensus 343 l~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAG 417 (764)
T ss_pred hCccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--cccc
Confidence 3667899999987663 2222221111 23345566689999999999999999999876544432 22110 0011
Q ss_pred hhhHHHHH------HHHH--HHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC------
Q 003619 501 VGSARIRD------LFKR--AKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------ 566 (807)
Q Consensus 501 ~~~~~ir~------lF~~--A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~------ 566 (807)
.+..-+++ .++. .......|..|||+|.+..+.+ . .++..|+..
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq-------------------v---AihEAMEQQtISIaK 475 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ-------------------V---AIHEAMEQQTISIAK 475 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH-------------------H---HHHHHHHhheehhee
Confidence 11111110 0000 0113445899999999764321 1 122222211
Q ss_pred -----CCCCceEEEeccCccC-------------CCCcccCCCccccEE-EeccCCCHHHHHHHHHHHhhcCCC------
Q 003619 567 -----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRK-IRIRAPNAKGRTEILKIHASKVKM------ 621 (807)
Q Consensus 567 -----~~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~-I~I~lPd~eeR~eILk~~L~~~~l------ 621 (807)
.-+.+.-||||+|... .+++++++ |||.. |-++.|+...-..|-++.+.....
T Consensus 476 AGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~ 553 (764)
T KOG0480|consen 476 AGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE 553 (764)
T ss_pred cceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcccccccc
Confidence 1122345788888643 37889999 99974 455667665443333333221100
Q ss_pred --------------------CCccC------H-HH---H--------HhhCCCCcHHHHHHHHHHHHHHHHHhCCCccCH
Q 003619 622 --------------------SDSVD------L-SS---Y--------AKNLPGWTGARLAQLVQEAALVAVRKGHESILS 663 (807)
Q Consensus 622 --------------------~~dvd------L-~~---L--------A~~T~GfSgaDL~~Lv~eAal~A~rr~~~~It~ 663 (807)
.+-.. + +. + .+.+.+.|.++|+.+++-+-.+|.-+-++.+|.
T Consensus 554 ~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~ 633 (764)
T KOG0480|consen 554 RVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTK 633 (764)
T ss_pred ccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccH
Confidence 00000 0 00 0 011225788999999999999998888899999
Q ss_pred HHHHHHHHHHh
Q 003619 664 SDMDDAVDRLT 674 (807)
Q Consensus 664 edl~~Al~rv~ 674 (807)
+|+.+|++-..
T Consensus 634 ~~v~ea~eLlk 644 (764)
T KOG0480|consen 634 EDVEEAVELLK 644 (764)
T ss_pred HHHHHHHHHHH
Confidence 99999977554
No 254
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.5e-05 Score=94.87 Aligned_cols=221 Identities=22% Similarity=0.267 Sum_probs=127.6
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhh--cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE-eCchhHHHHhhh
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDK--MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM-AGSEFVEVLVGV 501 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~--lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I-s~sel~~~~vG~ 501 (807)
..|.|++.+|+.+. +..+........ ..++..-+|||.|.||||||.|.+.+++-+-..++.- .++. -.|.
T Consensus 286 PsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~GL 359 (682)
T COG1241 286 PSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAGL 359 (682)
T ss_pred ccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccCc
Confidence 46889999988774 333333322111 1234446899999999999999999998775544322 1111 1222
Q ss_pred hhHHHHHHH--H---HH---HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC-------
Q 003619 502 GSARIRDLF--K---RA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF------- 566 (807)
Q Consensus 502 ~~~~ir~lF--~---~A---~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~------- 566 (807)
++..+++-. + .| ....+.|++|||+|.+.... . +.+...|+..
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------------r---~aihEaMEQQtIsIaKA 417 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------------R---VAIHEAMEQQTISIAKA 417 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------------H---HHHHHHHHhcEeeeccc
Confidence 222222211 0 11 12356799999999864321 1 1222222211
Q ss_pred ----CCCCceEEEeccCccC-------------CCCcccCCCccccEEEecc-CCCHHHHHH----HHHHHh--------
Q 003619 567 ----DTGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRIR-APNAKGRTE----ILKIHA-------- 616 (807)
Q Consensus 567 ----~~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I~I~-lPd~eeR~e----ILk~~L-------- 616 (807)
.-+.+.-|+||+|... .|+++|++ |||..+-+. .|+.+.=.. ++..|.
T Consensus 418 GI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~ 495 (682)
T COG1241 418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETI 495 (682)
T ss_pred ceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccc
Confidence 1123456788888754 27888999 999876554 465542222 333332
Q ss_pred -----------------------hc-C-CCCCccCHHHHHh---------------hCCCCcHHHHHHHHHHHHHHHHHh
Q 003619 617 -----------------------SK-V-KMSDSVDLSSYAK---------------NLPGWTGARLAQLVQEAALVAVRK 656 (807)
Q Consensus 617 -----------------------~~-~-~l~~dvdL~~LA~---------------~T~GfSgaDL~~Lv~eAal~A~rr 656 (807)
+. . +.-.+...+.|.+ .+...|.++|+.+++-|-..|..+
T Consensus 496 ~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~r 575 (682)
T COG1241 496 SLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMR 575 (682)
T ss_pred ccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhh
Confidence 11 0 0001100111111 112367899999999999999999
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 003619 657 GHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 657 ~~~~It~edl~~Al~rv~~ 675 (807)
-.+.++.+|+.+|+.-+..
T Consensus 576 LS~~V~~eD~~eAi~lv~~ 594 (682)
T COG1241 576 LSDVVEEEDVDEAIRLVDF 594 (682)
T ss_pred ccCCCCHHHHHHHHHHHHH
Confidence 9999999999999876653
No 255
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=7.4e-05 Score=86.07 Aligned_cols=209 Identities=15% Similarity=0.220 Sum_probs=109.6
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHHh--cChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeC-
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYL--KNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG- 491 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~L--~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~- 491 (807)
+.++-.+-+.++|.=+..-+.++++++..+ ..+. -..+-+||+||+|||||+.++.++.++|..++.-+.
T Consensus 72 W~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~-------l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 72 WVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK-------LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred hHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC-------CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 345555667788876655555555554421 1121 123458899999999999999999999987765431
Q ss_pred ------------chhHHHHhhhhhHHHHHHHHHHH------------hCCCcEEEeccchhhhhhhcCcccCcchhhhhh
Q 003619 492 ------------SEFVEVLVGVGSARIRDLFKRAK------------VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNA 547 (807)
Q Consensus 492 ------------sel~~~~vG~~~~~ir~lF~~A~------------~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~ 547 (807)
+.+..................+. ...+.+|+|||+-......
T Consensus 145 i~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------------- 210 (634)
T KOG1970|consen 145 INLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------------- 210 (634)
T ss_pred ccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh--------------
Confidence 11111111111112222233331 1346699999987655321
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCC------ccccEEEeccCCCHHHHHHHHHHHhhcCCC
Q 003619 548 ATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRP------GRFDRKIRIRAPNAKGRTEILKIHASKVKM 621 (807)
Q Consensus 548 ~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRp------GRFdr~I~I~lPd~eeR~eILk~~L~~~~l 621 (807)
....+..+|..+-....-.-|++|.-++.++..++..+.+ .|. ..|.|.+-...--++.|+..+.....
T Consensus 211 ----~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 211 ----DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEAN 285 (634)
T ss_pred ----hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcc
Confidence 1122333333332222222334443333344433332221 133 26677766666566666655543221
Q ss_pred -------CCccCHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003619 622 -------SDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 622 -------~~dvdL~~LA~~T~GfSgaDL~~Lv~eAal~A 653 (807)
.....++.++.... +||+..++...+.+
T Consensus 286 ~~s~~k~~~~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 286 KKSGIKVPDTAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred cccCCcCchhHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 12333555665554 49999999887775
No 256
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.06 E-value=3.9e-05 Score=89.91 Aligned_cols=155 Identities=21% Similarity=0.339 Sum_probs=83.1
Q ss_pred cccccHHHHHHHHHHHHHhcChh-hhhhcC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhh
Q 003619 426 DVAGIDEAVEELQELVRYLKNPE-LFDKMG-IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGS 503 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe-~~~~lG-l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~ 503 (807)
.|.|+|.+|.-|. +..+-... .+...| .+..-+|||+|.||||||.+.+.+++-+-.-.+ .++.. +.-+|.++
T Consensus 430 sIye~edvKkglL--LqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkG--sSavGLTa 504 (804)
T KOG0478|consen 430 SIYELEDVKKGLL--LQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKG--SSAVGLTA 504 (804)
T ss_pred hhhcccchhhhHH--HHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCc--cchhccee
Confidence 5788888887663 22222111 111112 344458999999999999999999987744333 22211 00111111
Q ss_pred HH-----HHHHHHHH---HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh------hcCC--C
Q 003619 504 AR-----IRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE------LDGF--D 567 (807)
Q Consensus 504 ~~-----ir~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e------Ldg~--~ 567 (807)
.. -+.+.-+. -.....|..|||+|.+..... ..|.+.+++ ..|. .
T Consensus 505 yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStr-------------------SvLhEvMEQQTvSIAKAGII~s 565 (804)
T KOG0478|consen 505 YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTR-------------------SVLHEVMEQQTLSIAKAGIIAS 565 (804)
T ss_pred eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHH-------------------HHHHHHHHHhhhhHhhcceeee
Confidence 00 01111110 113445889999999854321 222222221 1111 1
Q ss_pred CCCceEEEeccCccC-------------CCCcccCCCccccEEE-eccCCCHH
Q 003619 568 TGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKI-RIRAPNAK 606 (807)
Q Consensus 568 ~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I-~I~lPd~e 606 (807)
-+.+.-|+|++|... .|+|.|++ |||.++ -+..||..
T Consensus 566 LNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 566 LNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred ccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 123456889998432 27999999 999865 44566655
No 257
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.98 E-value=4.4e-05 Score=78.07 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=52.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH-HHhhh----------------------hhHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-VLVGV----------------------GSARIR 507 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~-~~vG~----------------------~~~~ir 507 (807)
|++.+.-++|+||||+|||+++..++.+. +.+.++++..++.. .+... ....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 56777789999999999999999987643 66788888764211 11110 011133
Q ss_pred HHHHHHHhCCCcEEEeccchhhhh
Q 003619 508 DLFKRAKVNKPSVIFIDEIDALAT 531 (807)
Q Consensus 508 ~lF~~A~~~~PsILfIDEID~L~~ 531 (807)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333344455789999999999864
No 258
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.98 E-value=6.2e-06 Score=96.78 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=63.2
Q ss_pred CcccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc---cc---cccc--cccccCC--C
Q 003619 350 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGI---DF---SRSK--AEARVDG--S 419 (807)
Q Consensus 350 ~~~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~---~~~~--~~~~~~~--~ 419 (807)
+...++.|.+++|+++.....+.....-+.+++..+.....-+....|.-.....+ .. .... ......+ .
T Consensus 311 ~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 390 (604)
T COG4178 311 AAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNAD 390 (604)
T ss_pred ccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccccccccccccc
Confidence 45568899999999998777776666655555443321111000000000000000 00 0000 0000011 4
Q ss_pred CCcccCcccccHHH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 420 TGVKFSDVAGIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 420 ~~v~F~dVvG~dev-keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
..++|+++.=.... ...|++ ..+.++++..+||.||+|||||+|.|++|+
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~-----------l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSE-----------LNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred ceeEEeeeeEECCCCCeeecc-----------ceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 56777776422211 111111 135677888999999999999999999998
No 259
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.98 E-value=1.4e-05 Score=93.07 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=60.7
Q ss_pred cccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccc--c-ccc-cccccCCCCCcccCccc-c
Q 003619 355 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDF--S-RSK-AEARVDGSTGVKFSDVA-G 429 (807)
Q Consensus 355 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~v~F~dVv-G 429 (807)
.+|.++.|.+.+++.+...+..++..+..+............+.....+..+. . ... ..........+.|+||. .
T Consensus 264 ~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 343 (529)
T TIGR02868 264 ADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFG 343 (529)
T ss_pred hCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEe
Confidence 46778888888888777666666555544332222211111111111110000 0 000 00001112346777765 4
Q ss_pred cHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 430 IDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 430 ~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+++.+..|+++ .+.++++..+.|.||+|+|||||++.+++..
T Consensus 344 Y~~~~~vL~~i-----------sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 344 YPGSPPVLDGV-----------SLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCCceeecc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 43211112111 3456778889999999999999999999854
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.97 E-value=2.3e-06 Score=94.63 Aligned_cols=219 Identities=19% Similarity=0.232 Sum_probs=110.7
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhh--hcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH-----H
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFD--KMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE-----V 497 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~--~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~-----~ 497 (807)
.+|.|.+.+|..+. +..+....... ....+..-++||+|.||||||.|.+.+++-+...+ +.++..... .
T Consensus 24 P~i~g~~~iK~ail--l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 24 PSIYGHEDIKKAIL--LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTAS 100 (331)
T ss_dssp STTTT-HHHHHHHC--CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEE
T ss_pred CcCcCcHHHHHHHH--HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccce
Confidence 36889888876663 11111111000 01123445799999999999999998866543333 333221100 0
Q ss_pred H---hhhhhHHH-HHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC----C--
Q 003619 498 L---VGVGSARI-RDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF----D-- 567 (807)
Q Consensus 498 ~---vG~~~~~i-r~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~----~-- 567 (807)
. ...++-.+ ...+-. ....|++|||+|.+.... ...|+..|+.- .
T Consensus 101 ~~~d~~~~~~~leaGalvl---ad~GiccIDe~dk~~~~~----------------------~~~l~eaMEqq~isi~ka 155 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVL---ADGGICCIDEFDKMKEDD----------------------RDALHEAMEQQTISIAKA 155 (331)
T ss_dssp ECCCGGTSSECEEE-HHHH---CTTSEEEECTTTT--CHH----------------------HHHHHHHHHCSCEEECTS
T ss_pred eccccccceeEEeCCchhc---ccCceeeecccccccchH----------------------HHHHHHHHHcCeeccchh
Confidence 0 00000000 012222 344699999999875321 23444444431 1
Q ss_pred -----CCCceEEEeccCccC-------------CCCcccCCCccccEEEec-cCCCHHHHHHHHHHHhhcCCCC------
Q 003619 568 -----TGKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKIHASKVKMS------ 622 (807)
Q Consensus 568 -----~~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I~I-~lPd~eeR~eILk~~L~~~~l~------ 622 (807)
-+.+.-|+|++|... .+++.|++ |||..+.+ ..|+.+.-..+-++.+......
T Consensus 156 gi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~ 233 (331)
T PF00493_consen 156 GIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEK 233 (331)
T ss_dssp SSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S-----
T ss_pred hhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccc
Confidence 123467899998655 37888998 99998776 4566554444444333321100
Q ss_pred ---C---ccC------HHHHHh------------------------------hCCCCcHHHHHHHHHHHHHHHHHhCCCc
Q 003619 623 ---D---SVD------LSSYAK------------------------------NLPGWTGARLAQLVQEAALVAVRKGHES 660 (807)
Q Consensus 623 ---~---dvd------L~~LA~------------------------------~T~GfSgaDL~~Lv~eAal~A~rr~~~~ 660 (807)
. .++ +-.+++ .....|.+.|+.+++-|...|..+.+..
T Consensus 234 ~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~ 313 (331)
T PF00493_consen 234 KIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDE 313 (331)
T ss_dssp ---SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSE
T ss_pred cccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCc
Confidence 0 000 111122 0113467788999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 003619 661 ILSSDMDDAVDRL 673 (807)
Q Consensus 661 It~edl~~Al~rv 673 (807)
|+.+|+..|+.-.
T Consensus 314 V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 314 VTEEDVEEAIRLF 326 (331)
T ss_dssp CSHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHH
Confidence 9999999998644
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.97 E-value=0.00014 Score=77.27 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=84.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHh--cCCCE---EEEeCc------hhHHHHh---hh---------hhHHHHHHHHHH
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGE--AGVPF---YQMAGS------EFVEVLV---GV---------GSARIRDLFKRA 513 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~e--lg~pf---i~Is~s------el~~~~v---G~---------~~~~ir~lF~~A 513 (807)
..+-|.|+|++|+|||+||+.+++. ....| +.++.+ ++..... +. ........+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4557899999999999999999987 33222 223221 1111111 11 122233444445
Q ss_pred HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCcc
Q 003619 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 593 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGR 593 (807)
....+++|+||+++... .+..+...+.... .+..||.||....... ... .
T Consensus 98 L~~~~~LlVlDdv~~~~------------------------~~~~l~~~~~~~~--~~~kilvTTR~~~v~~-~~~---~ 147 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------------------DLEELREPLPSFS--SGSKILVTTRDRSVAG-SLG---G 147 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------------------HH-------HCHH--SS-EEEEEESCGGGGT-THH---S
T ss_pred hccccceeeeeeecccc------------------------ccccccccccccc--cccccccccccccccc-ccc---c
Confidence 55669999999998632 1112221111111 2334555665433211 111 1
Q ss_pred ccEEEeccCCCHHHHHHHHHHHhhcCCC---C-CccCHHHHHhhCCCCcHHHHHHHH
Q 003619 594 FDRKIRIRAPNAKGRTEILKIHASKVKM---S-DSVDLSSYAKNLPGWTGARLAQLV 646 (807)
Q Consensus 594 Fdr~I~I~lPd~eeR~eILk~~L~~~~l---~-~dvdL~~LA~~T~GfSgaDL~~Lv 646 (807)
-+..++++..+.++-.++|..+...... . .+.....+++.+.| .|-.|.-+.
T Consensus 148 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 148 TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 1578999999999999999988765431 1 12225778888877 566666553
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=0.0001 Score=93.89 Aligned_cols=175 Identities=20% Similarity=0.272 Sum_probs=96.5
Q ss_pred CcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE---EEEeCc-----
Q 003619 421 GVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF---YQMAGS----- 492 (807)
Q Consensus 421 ~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pf---i~Is~s----- 492 (807)
...+++++|.++.++++.+++.. .....+-+-|+|++|+||||||+++++....+| +.++..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred CcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 35678999999988888766531 223455788999999999999999988764332 111110
Q ss_pred -hhH--------HHHhhhhhHHHH-------------HHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhH
Q 003619 493 -EFV--------EVLVGVGSARIR-------------DLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQ 550 (807)
Q Consensus 493 -el~--------~~~vG~~~~~ir-------------~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~ 550 (807)
... ..........+. ..++......+.+|+|||++...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~-------------------- 309 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD-------------------- 309 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH--------------------
Confidence 000 000000000000 11222233566789999987521
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccC----
Q 003619 551 ERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVD---- 626 (807)
Q Consensus 551 e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvd---- 626 (807)
.+..+....+.+..+. .||.||..... ++....++.+.++.|+.++..+++..++-+....+ .+
T Consensus 310 ----~l~~L~~~~~~~~~Gs--rIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l 377 (1153)
T PLN03210 310 ----VLDALAGQTQWFGSGS--RIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMEL 377 (1153)
T ss_pred ----HHHHHHhhCccCCCCc--EEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 1222222222222222 34445554333 22224578899999999999999988875433222 12
Q ss_pred HHHHHhhCCCC
Q 003619 627 LSSYAKNLPGW 637 (807)
Q Consensus 627 L~~LA~~T~Gf 637 (807)
..++++.+.|.
T Consensus 378 ~~~iv~~c~GL 388 (1153)
T PLN03210 378 ASEVALRAGNL 388 (1153)
T ss_pred HHHHHHHhCCC
Confidence 23455666664
No 263
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.89 E-value=0.00012 Score=77.43 Aligned_cols=129 Identities=21% Similarity=0.234 Sum_probs=72.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCccc
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFK 538 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~ 538 (807)
.+..++||+|||||.+++++|+.+|.+++.++|++..+. ..+..+|.-+.. ..+.+.+||++.+....-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~-~GaW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQ-SGAWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHH-HT-EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhh-cCchhhhhhhhhhhHHHH----
Confidence 467899999999999999999999999999999875542 344555544433 356999999998754321
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHhhcCC-----------CCCCceEEEeccCc----cCCCCcccCCCccccEEEeccCC
Q 003619 539 DTTDHLYNAATQERETTLNQLLIELDGF-----------DTGKGVIFLAATNR----RDLLDPALLRPGRFDRKIRIRAP 603 (807)
Q Consensus 539 ~~~d~~~~~~~~e~~~tLn~LL~eLdg~-----------~~~~~VIVIAATN~----pd~LDpALlRpGRFdr~I~I~lP 603 (807)
+.. .+.+..+...+..- .-+.+.-+..|.|. ...||+.|+. +-|.+.+..|
T Consensus 102 -------S~i----~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~P 167 (231)
T PF12774_consen 102 -------SVI----SQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVP 167 (231)
T ss_dssp -------HHH----HHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S-
T ss_pred -------HHH----HHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCC
Confidence 111 11122222222211 11122334445553 3468888875 4478899999
Q ss_pred CHHHHHHHH
Q 003619 604 NAKGRTEIL 612 (807)
Q Consensus 604 d~eeR~eIL 612 (807)
|.....+++
T Consensus 168 D~~~I~ei~ 176 (231)
T PF12774_consen 168 DLSLIAEIL 176 (231)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 987655544
No 264
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.81 E-value=7.4e-05 Score=82.51 Aligned_cols=136 Identities=25% Similarity=0.331 Sum_probs=75.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE-EEEeCchhHHH-------HhhhhhHHHHHHHHHHHhCCCcEEEeccch
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPF-YQMAGSEFVEV-------LVGVGSARIRDLFKRAKVNKPSVIFIDEID 527 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pf-i~Is~sel~~~-------~vG~~~~~ir~lF~~A~~~~PsILfIDEID 527 (807)
.+++|+.|||+-|.|||+|.-.....+-.+- ..+.-..|... +.|... -+..+-.. ......||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~-~~~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADE-LAAETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHH-HHhcCCEEEeeeee
Confidence 4789999999999999999999988774432 22222233221 222221 11111111 11233499999987
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc-cCCCCcccCCCccccEEEeccCCCHH
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPGRFDRKIRIRAPNAK 606 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~-pd~LDpALlRpGRFdr~I~I~lPd~e 606 (807)
-- + -...-.+..|+.+|= ..+|++++|+|. |+.|-+.=+...||- |
T Consensus 141 Vt---------D----------I~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~FL-------P--- 187 (367)
T COG1485 141 VT---------D----------IADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERFL-------P--- 187 (367)
T ss_pred ec---------C----------hHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhhH-------H---
Confidence 41 1 111234556665554 257899999997 455433222223332 1
Q ss_pred HHHHHHHHHhhcCCCCCccCH
Q 003619 607 GRTEILKIHASKVKMSDSVDL 627 (807)
Q Consensus 607 eR~eILk~~L~~~~l~~dvdL 627 (807)
-.++|+.++.-+.++...|.
T Consensus 188 -~I~li~~~~~v~~vD~~~DY 207 (367)
T COG1485 188 -AIDLIKSHFEVVNVDGPVDY 207 (367)
T ss_pred -HHHHHHHheEEEEecCCccc
Confidence 24567777776666666554
No 265
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.79 E-value=2.7e-05 Score=91.77 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred cccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-ccHHH
Q 003619 355 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GIDEA 433 (807)
Q Consensus 355 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~dev 433 (807)
..|.++.|.+..+..++..+..++..+...............+.....+..+...............++|+++. .+++.
T Consensus 275 ~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~ 354 (582)
T PRK11176 275 VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGK 354 (582)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCC
Confidence 45678888888777777666666665554432222211111111111110000000000001112246677664 22211
Q ss_pred -HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 434 -VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 434 -keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+..++ +- .+.++++..+.|.||+|+|||||++.+++..
T Consensus 355 ~~~il~-------~i----~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 355 EVPALR-------NI----NFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCcccc-------Cc----eEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 11111 11 2446677889999999999999999999844
No 266
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.78 E-value=0.00023 Score=70.81 Aligned_cols=71 Identities=30% Similarity=0.329 Sum_probs=46.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh-----------------------hhH----
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV-----------------------GSA---- 504 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v------G~-----------------------~~~---- 504 (807)
+||.||||||||+++..++.+. |.++++++..+-.+.+. |. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999886643 67777776543222110 00 000
Q ss_pred -HHHHHHHHHHhCCCcEEEeccchhhhh
Q 003619 505 -RIRDLFKRAKVNKPSVIFIDEIDALAT 531 (807)
Q Consensus 505 -~ir~lF~~A~~~~PsILfIDEID~L~~ 531 (807)
....+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 123334444567899999999998754
No 267
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.8e-05 Score=85.38 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=74.1
Q ss_pred cccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc--ccccc-CCCCCcccCccc-
Q 003619 353 SKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK--AEARV-DGSTGVKFSDVA- 428 (807)
Q Consensus 353 ~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~v~F~dVv- 428 (807)
.-..|.+|.|+++..-.++.+.-.|+..+...++-...........+++......-... ++... .....+.|.+|.
T Consensus 191 ~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F 270 (497)
T COG5265 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSF 270 (497)
T ss_pred HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEe
Confidence 33557899999999999999999999988777654433322222222222211111111 11111 233456777776
Q ss_pred ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 429 G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+++.-+.-|..+ ++-+++++.+-++||+|+||+++.+.+-+-.
T Consensus 271 ~y~~~r~iL~~i-----------sf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 271 AYDPRRPILNGI-----------SFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred eccccchhhcCc-----------cccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 555554444322 2346777889999999999999999998854
No 268
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.75 E-value=0.00021 Score=81.53 Aligned_cols=226 Identities=22% Similarity=0.261 Sum_probs=129.8
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe-CchhHHHHhhhhhH
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA-GSEFVEVLVGVGSA 504 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is-~sel~~~~vG~~~~ 504 (807)
+|.|++++|+.|.-++---.+...-..+.++..-+|+|.|.||+.||.|.+.+.+-+-...+..- +|. -+|.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccchh
Confidence 68999999998864443211111112334555568999999999999999999987755554432 111 1333333
Q ss_pred HHHHHHHH-------H-HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh----h--cCCC--C
Q 003619 505 RIRDLFKR-------A-KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE----L--DGFD--T 568 (807)
Q Consensus 505 ~ir~lF~~-------A-~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e----L--dg~~--~ 568 (807)
.+++-..- | -.....|..|||+|.+..... ..+.+.+.+ + .|+. -
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR-------------------tAIHEVMEQQTISIaKAGI~TtL 479 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR-------------------TAIHEVMEQQTISIAKAGINTTL 479 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh-------------------HHHHHHHHhhhhhhhhhccccch
Confidence 33321110 0 112345889999999864321 111111111 0 1111 1
Q ss_pred CCceEEEeccCccC-------------CCCcccCCCccccEEEec-cCCCHHHHHHHHHH----HhhcCCCCC---ccCH
Q 003619 569 GKGVIFLAATNRRD-------------LLDPALLRPGRFDRKIRI-RAPNAKGRTEILKI----HASKVKMSD---SVDL 627 (807)
Q Consensus 569 ~~~VIVIAATN~pd-------------~LDpALlRpGRFdr~I~I-~lPd~eeR~eILk~----~L~~~~l~~---dvdL 627 (807)
+.+.-|+||.|... .||.||++ |||..+-+ ..||.+.-..+-++ |......+. .++.
T Consensus 480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~ 557 (721)
T KOG0482|consen 480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDP 557 (721)
T ss_pred hhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCH
Confidence 23456788888533 38999999 99975544 46765544433332 221111110 0110
Q ss_pred H----------------------HH----------Hh--hCC-CCcHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003619 628 S----------------------SY----------AK--NLP-GWTGARLAQLVQEAALVAVRKGHESILSSDMDDAVDR 672 (807)
Q Consensus 628 ~----------------------~L----------A~--~T~-GfSgaDL~~Lv~eAal~A~rr~~~~It~edl~~Al~r 672 (807)
+ .+ ++ .-. -.|++-|-.+++-+..+|..+-.+.+..+|+.+|+.-
T Consensus 558 ~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 558 NLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 0 00 10 001 2468889999999999999888899999999999987
Q ss_pred HhcC
Q 003619 673 LTVG 676 (807)
Q Consensus 673 v~~g 676 (807)
....
T Consensus 638 me~s 641 (721)
T KOG0482|consen 638 MEMS 641 (721)
T ss_pred HHhh
Confidence 6553
No 269
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.73 E-value=0.00014 Score=76.37 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=40.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch--hH--------HHHhhhhhHHHHHHHHHHH--hCCCcEEEecc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE--FV--------EVLVGVGSARIRDLFKRAK--VNKPSVIFIDE 525 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se--l~--------~~~vG~~~~~ir~lF~~A~--~~~PsILfIDE 525 (807)
|..+||||+||+|||++|+.++.. ..++..+.+. +. ..-.....+.+.+.+..+. .....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 567999999999999999999732 1222222211 00 0000001122333333322 24467999999
Q ss_pred chhhhh
Q 003619 526 IDALAT 531 (807)
Q Consensus 526 ID~L~~ 531 (807)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 999865
No 270
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.70 E-value=2.7e-05 Score=91.67 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=65.6
Q ss_pred ccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-ccHHHH
Q 003619 356 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GIDEAV 434 (807)
Q Consensus 356 ~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~devk 434 (807)
.+.++.|.+.+++.++..+..++..+...............+.....+..+.-.............+.|+++. +++.-+
T Consensus 263 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~ 342 (567)
T COG1132 263 SGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKK 342 (567)
T ss_pred cCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCC
Confidence 3447888999888888888887777766554444332222222222221000000000011122336777775 555411
Q ss_pred HHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 435 EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 435 eeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
..++++ .+.++++..+-|+||+|+||||+++.+.+-.
T Consensus 343 ~vl~~i-----------s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~ 379 (567)
T COG1132 343 PVLKDI-----------SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY 379 (567)
T ss_pred ccccCc-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 112111 3446777889999999999999999999843
No 271
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.69 E-value=0.00011 Score=88.98 Aligned_cols=120 Identities=18% Similarity=0.099 Sum_probs=64.3
Q ss_pred cccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc-ccc-ccccCCCCCcccCccc
Q 003619 351 ILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSR-SKA-EARVDGSTGVKFSDVA 428 (807)
Q Consensus 351 ~~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~v~F~dVv 428 (807)
.+...+|.+|.|++.++..+...+..++..+..+............+..+..+...... ... .........+.|++|.
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEE
Confidence 33445788999999998888877777777665554333222111111111111000000 000 0011112346666654
Q ss_pred -ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 429 -GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 429 -G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.++..+..|+ +- .+.++++..+.|.||+|+|||||++.+++.
T Consensus 481 f~y~~~~~iL~-------~i----sl~i~~G~~vaIvG~SGsGKSTLlklL~gl 523 (708)
T TIGR01193 481 YSYGYGSNILS-------DI----SLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523 (708)
T ss_pred EEcCCCCccee-------ce----eEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3321111111 11 345677888999999999999999999984
No 272
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.68 E-value=4e-05 Score=89.91 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred CcccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-
Q 003619 350 GILSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA- 428 (807)
Q Consensus 350 ~~~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv- 428 (807)
|.+...+|.+|.|.+.+++.+...+..++..+...............+.....+..+...............+.|++|-
T Consensus 259 g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f 338 (571)
T TIGR02203 259 ALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTF 338 (571)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEE
Confidence 3344557889999999998888887777776655543322221111111111110000000000001112235566654
Q ss_pred ccHHHHH-HHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 429 GIDEAVE-ELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 429 G~devke-eL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.+++... .++ + -.+.++++..+.|.|++|+|||||++.+++..
T Consensus 339 ~y~~~~~~il~-------~----inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 339 RYPGRDRPALD-------S----ISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EcCCCCCcccc-------C----eeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 2221101 111 1 12346777889999999999999999999844
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.67 E-value=0.0016 Score=70.78 Aligned_cols=220 Identities=18% Similarity=0.199 Sum_probs=111.8
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEE-----eC--c
Q 003619 426 DVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG-----VPFYQM-----AG--S 492 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg-----~pfi~I-----s~--s 492 (807)
.|.|+.-+++.+-..+.. +.++.- +.|--+=++|+|||||.+.++.||+... .+++.. ++ .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478999888888777664 555531 2344556899999999999999999762 222211 11 1
Q ss_pred hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHh---hcCCCCC
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE---LDGFDTG 569 (807)
Q Consensus 493 el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~e---Ldg~~~~ 569 (807)
.-++.|..+-... +...+..+..++.++||.|.+.+ .....+.-+|+- .+|.+-+
T Consensus 157 ~~ie~Yk~eL~~~---v~~~v~~C~rslFIFDE~DKmp~-------------------gLld~lkpfLdyyp~v~gv~fr 214 (344)
T KOG2170|consen 157 SKIEDYKEELKNR---VRGTVQACQRSLFIFDEVDKLPP-------------------GLLDVLKPFLDYYPQVSGVDFR 214 (344)
T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCceEEechhhhcCH-------------------hHHHHHhhhhcccccccccccc
Confidence 1122232222223 33445567788999999999753 233444445442 2333333
Q ss_pred CceEEEeccCccC-CCCc---ccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCC--CCcHHHHH
Q 003619 570 KGVIFLAATNRRD-LLDP---ALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP--GWTGARLA 643 (807)
Q Consensus 570 ~~VIVIAATN~pd-~LDp---ALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~--GfSgaDL~ 643 (807)
. -|+|.-+|.-. .|.. ...+.|+-...+.+..-+..-..............+..++...|..-.+ -+.-+++.
T Consensus 215 k-aIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~ 293 (344)
T KOG2170|consen 215 K-AIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVR 293 (344)
T ss_pred c-eEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHH
Confidence 3 44555555433 2221 2234455444444433333333333322222222222232222222221 12456777
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCc
Q 003619 644 QLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPK 678 (807)
Q Consensus 644 ~Lv~eAal~A~rr~~~~It~edl~~Al~rv~~g~~ 678 (807)
.+++... . +++ -..+.+-+++.++....-++
T Consensus 294 ~C~r~el-~--~rg-~~~d~~~~erva~~l~ffp~ 324 (344)
T KOG2170|consen 294 SCIRAEL-R--KRG-LAPDQDFVERVANSLSFFPE 324 (344)
T ss_pred HHHHHHH-H--hcc-cccchHHHHHHHHhhccccc
Confidence 7766543 1 222 45666666777766665443
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.66 E-value=0.0008 Score=76.61 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCchhHHHHhhhhhHHH
Q 003619 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGVGSARI 506 (807)
Q Consensus 431 devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~sel~~~~vG~~~~~i 506 (807)
......|.+.+.++.. ..++++.||+|||||+++.+++... | -.++.+.++.....
T Consensus 193 r~k~~~L~rl~~fve~-----------~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------ 252 (449)
T TIGR02688 193 RQKLLLLARLLPLVEP-----------NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------ 252 (449)
T ss_pred HHHHHHHHhhHHHHhc-----------CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH------
Confidence 3344555555555543 3489999999999999999998762 3 23334444433221
Q ss_pred HHHHHHHHhCCCcEEEeccchhhh
Q 003619 507 RDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 507 r~lF~~A~~~~PsILfIDEID~L~ 530 (807)
..+. .-...++|+|||+..+.
T Consensus 253 -~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 253 -RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred -HHHh--hhccCCEEEEEcCCCCc
Confidence 1111 23456799999998864
No 275
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.64 E-value=7.9e-05 Score=89.79 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=62.3
Q ss_pred cccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccc-ccCCCCCcccCccc-ccHH
Q 003619 355 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEA-RVDGSTGVKFSDVA-GIDE 432 (807)
Q Consensus 355 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~F~dVv-G~de 432 (807)
.+|.+|.|.+.++..+...+..++..+...............+..+..+... +...... .......+.|++|. .++.
T Consensus 385 ~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~-e~~~~~~~~~~~~~~I~~~nvsf~Y~~ 463 (686)
T TIGR03797 385 GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP-EVDEAKTDPGKLSGAIEVDRVTFRYRP 463 (686)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccCcCCCCCCCceEEEEEEEEEcCC
Confidence 4678899999998888777777766665544332222111111111111000 0000000 00112246666664 2211
Q ss_pred -HHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 433 -AVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 433 -vkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.+..|+.+ .+.++++..+.|.||+|+|||||++.+++..
T Consensus 464 ~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 464 DGPLILDDV-----------SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CCccceeee-----------EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 11112111 3456788889999999999999999999843
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.64 E-value=0.0001 Score=87.13 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=62.3
Q ss_pred ccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-cc-ccccCCCCCcccCccc-
Q 003619 352 LSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KA-EARVDGSTGVKFSDVA- 428 (807)
Q Consensus 352 ~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~v~F~dVv- 428 (807)
+...+|.++.|.+.+++.+...+..++..+.............-.+..+.......... .. .........+.|+++.
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 34456889999999888877777777666554432222211111111011110000000 00 0000112246676664
Q ss_pred ccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 429 GIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 429 G~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+++..+..|+.+ .+.++++..+.|.|++|+|||||++.+++..
T Consensus 343 ~y~~~~~iL~~i-----------nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 343 SYDNSRQGVEDV-----------SFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EeCCCCceecce-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 332211111111 2446778889999999999999999999843
No 277
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.63 E-value=4e-05 Score=81.17 Aligned_cols=27 Identities=37% Similarity=0.712 Sum_probs=23.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
.+..+.-+-|.||+|||||||.+.+|+
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345566699999999999999999998
No 278
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.63 E-value=4.3e-05 Score=92.32 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=63.3
Q ss_pred ccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccc-cccc------cccc-cCCCCCcc
Q 003619 352 LSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDF-SRSK------AEAR-VDGSTGVK 423 (807)
Q Consensus 352 ~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~-~~~~~~v~ 423 (807)
+....|.+|.|.+.++..+...+..++..+...............+..+..+..+. .... .... ......+.
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 33456889999999988888877777776655433222222111111111110000 0000 0000 01122355
Q ss_pred cCccc-ccHHH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 424 FSDVA-GIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 424 F~dVv-G~dev-keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
|++|. .++.. +..|+++ .+.++++..+.|+||+|+|||||++.+++..
T Consensus 480 ~~~vsf~y~~~~~~vL~~i-----------sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENF-----------SLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEEEecCCCCCCcccce-----------eEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 66654 22211 1112111 3446778889999999999999999999844
No 279
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00019 Score=78.11 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------EEEEeCchhHHHHhhhhhHHHHHHHHHHHh----
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP----------------FYQMAGSEFVEVLVGVGSARIRDLFKRAKV---- 515 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p----------------fi~Is~sel~~~~vG~~~~~ir~lF~~A~~---- 515 (807)
+.+...||+||.|+||+.+|.++|..+-+. ++.+.... ... .-+...+|++.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999866321 12221100 000 0123445665555432
Q ss_pred CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCcccc
Q 003619 516 NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFD 595 (807)
Q Consensus 516 ~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFd 595 (807)
....|++||++|.+... ..|.||..++. ++.++++|..|+.++.+.|.+++ |.
T Consensus 94 ~~~kv~ii~~ad~mt~~----------------------AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc- 146 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD----------------------AISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS- 146 (290)
T ss_pred CCceEEEEechhhcCHH----------------------HHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-
Confidence 23359999999997532 34778888884 56677888888889999999988 64
Q ss_pred EEEeccCC
Q 003619 596 RKIRIRAP 603 (807)
Q Consensus 596 r~I~I~lP 603 (807)
..+.|+++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 46666654
No 280
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0014 Score=70.51 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=78.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc--------------hhHHHH---hhhhhHHHHHHHHHHHh---
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS--------------EFVEVL---VGVGSARIRDLFKRAKV--- 515 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s--------------el~~~~---vG~~~~~ir~lF~~A~~--- 515 (807)
.+|...|++||.|+||..+|.++|+.+-+.--.-.|. |+.--+ ..-+...++++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 5677899999999999999999998652110000011 000000 01123445555544321
Q ss_pred --CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCcc
Q 003619 516 --NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGR 593 (807)
Q Consensus 516 --~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGR 593 (807)
....|++||++|.+.. ...|.||..++. ++.++++|..|+.++.+.|.+++ |
T Consensus 85 e~~~~KV~II~~ae~m~~----------------------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--R 138 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK----------------------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--R 138 (261)
T ss_pred hcCCCEEEEeccHhhhCH----------------------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--h
Confidence 2346999999998753 335788888884 66778888889999999999998 6
Q ss_pred ccEEEeccCC
Q 003619 594 FDRKIRIRAP 603 (807)
Q Consensus 594 Fdr~I~I~lP 603 (807)
. ..+.++.+
T Consensus 139 C-q~~~~~~~ 147 (261)
T PRK05818 139 C-VQYVVLSK 147 (261)
T ss_pred e-eeeecCCh
Confidence 4 44566655
No 281
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.57 E-value=8.8e-05 Score=86.50 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|+||+|+|||+|++.+++..
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 446777889999999999999999999843
No 282
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.56 E-value=6.3e-05 Score=91.18 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=62.9
Q ss_pred ccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc-cccCCCCCcccCccc-ccH
Q 003619 354 KFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE-ARVDGSTGVKFSDVA-GID 431 (807)
Q Consensus 354 ~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~F~dVv-G~d 431 (807)
..+|.++.|++.+++.+...+..++..+...............+..+..+..+....... ........+.|+||. .++
T Consensus 410 v~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~ 489 (711)
T TIGR00958 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYP 489 (711)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECC
Confidence 446788999999888887777777666554433222221111111111110000000000 000112346777765 332
Q ss_pred HH--HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 432 EA--VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 432 ev--keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.. +..|+ +- .+.++++..+.|+||+|+|||||++.+++..
T Consensus 490 ~~~~~~vL~-------~i----sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 490 NRPDVPVLK-------GL----TFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CCCCCcccc-------Cc----eEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 10 11111 11 3456788889999999999999999999854
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.55 E-value=0.00055 Score=70.99 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=32.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
|++.+.-++|+||||+|||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56677779999999999999999998744 6788888876
No 284
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.55 E-value=0.00022 Score=84.39 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=58.3
Q ss_pred ccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-ccHHHH
Q 003619 356 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GIDEAV 434 (807)
Q Consensus 356 ~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~devk 434 (807)
.|.++.|.+.+++.+...+..++..+...............+.....+..+....... .......+.|+++. .++..+
T Consensus 276 ~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~ 354 (592)
T PRK10790 276 SGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDD-RPLQSGRIDIDNVSFAYRDDN 354 (592)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCc-cCCCCCeEEEEEEEEEeCCCC
Confidence 5677888888887776666666655544332222211111111111110000000000 01112346666665 222111
Q ss_pred HHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 435 EELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 435 eeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
. + +++- .+.++++..+.|.|++|+|||||++.+++..
T Consensus 355 ~----i---l~~i----~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 355 L----V---LQNI----NLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred c----e---eece----eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 1 1 1111 3456778889999999999999999999854
No 285
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00017 Score=83.21 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=60.6
Q ss_pred ccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc-cccccCCCCCcccCccc-ccHHH
Q 003619 356 YEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSK-AEARVDGSTGVKFSDVA-GIDEA 433 (807)
Q Consensus 356 ~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~F~dVv-G~dev 433 (807)
++.+++|++...-..+.++..++..+...++-+....--....+.... ....... +.........+.|+||. .+.+-
T Consensus 286 ~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~-~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~k 364 (591)
T KOG0057|consen 286 AGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLE-VDEDIQEAALPIELFGGSIEFDDVHFSYGPK 364 (591)
T ss_pred hccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhh-hhhhhhhccCCcccCCCcEEEEeeEEEeCCC
Confidence 457888888888888888777777765544332221000000000000 0000000 11222333447888875 22211
Q ss_pred HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 434 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 434 keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
..-|+.+ .+-++.+..|-|.|++|+|||++.+++-+
T Consensus 365 ~~iL~gv-----------sf~I~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 365 RKVLKGV-----------SFTIPKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred Cceecce-----------eEEecCCCEEEEECCCCCCHHHHHHHHHH
Confidence 1122211 23355666799999999999999999987
No 286
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.55 E-value=3.4e-05 Score=93.00 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=65.1
Q ss_pred ccccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc-c-ccCCCCCcccCccc-
Q 003619 352 LSKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE-A-RVDGSTGVKFSDVA- 428 (807)
Q Consensus 352 ~~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~v~F~dVv- 428 (807)
+...+|.+|.|.+.+++.+...+..++..+...............+..+..+.......... . .......+.|+||.
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf 471 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSF 471 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEE
Confidence 33456789999999998888777777766655443322222221121111111100000000 0 01112346777765
Q ss_pred ccHHH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 429 GIDEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 429 G~dev-keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.++.. +..|+++ .+.++++..+.|+||+|+|||||++.+++..
T Consensus 472 ~Y~~~~~~vL~~i-----------~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 472 AYPGQETPALDNV-----------SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred EeCCCCccceeee-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33211 1111111 2446778889999999999999999999844
No 287
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.54 E-value=0.0002 Score=82.44 Aligned_cols=79 Identities=24% Similarity=0.473 Sum_probs=57.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 516 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v------G~--------~~~~ir~lF~~A~~~ 516 (807)
|+.++.-++|+|+||+|||+|+..+|... +.++++++..+...... |. ....+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56777789999999999999999998755 67888888765443321 11 112345566666677
Q ss_pred CCcEEEeccchhhhhh
Q 003619 517 KPSVIFIDEIDALATR 532 (807)
Q Consensus 517 ~PsILfIDEID~L~~~ 532 (807)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988643
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.53 E-value=0.00021 Score=80.47 Aligned_cols=78 Identities=26% Similarity=0.497 Sum_probs=56.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 516 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v------G~--------~~~~ir~lF~~A~~~ 516 (807)
|+.++.-++|+|+||+|||+|+..+|... +.++++++..+-..... +. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56777789999999999999999998754 45788887654332211 11 122345566666677
Q ss_pred CCcEEEeccchhhhh
Q 003619 517 KPSVIFIDEIDALAT 531 (807)
Q Consensus 517 ~PsILfIDEID~L~~ 531 (807)
.|.+|+||+|..+..
T Consensus 158 ~~~lVVIDSIq~l~~ 172 (372)
T cd01121 158 KPDLVIIDSIQTVYS 172 (372)
T ss_pred CCcEEEEcchHHhhc
Confidence 899999999999864
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.53 E-value=0.00024 Score=71.63 Aligned_cols=28 Identities=29% Similarity=0.704 Sum_probs=24.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.+.++..++|+||+|||||+|.|++|.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 4566777899999999999999999998
No 290
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.52 E-value=0.00081 Score=75.37 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=87.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE---EEeCchhHHHH-------h-hhhh-------H---HHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFY---QMAGSEFVEVL-------V-GVGS-------A---RIRDLFKRA 513 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi---~Is~sel~~~~-------v-G~~~-------~---~ir~lF~~A 513 (807)
-.+|+|++|||.-|||||+|.-.+-..+-. .. .+...+|.... . ..+. . ..-.....-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 346999999999999999999988755421 10 11112222110 0 0000 0 000011111
Q ss_pred HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc-cCCCCcccCCCc
Q 003619 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLLDPALLRPG 592 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~-pd~LDpALlRpG 592 (807)
.....++|.+||+..-- -...-.+++|...|- ..+|+++||+|+ |+.|-..=+.
T Consensus 190 Ia~ea~lLCFDEfQVTD-------------------VADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-- 244 (467)
T KOG2383|consen 190 IAEEAILLCFDEFQVTD-------------------VADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-- 244 (467)
T ss_pred Hhhhceeeeechhhhhh-------------------HHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh--
Confidence 12335699999987521 001123444444432 247899999998 4554332222
Q ss_pred cccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCC-C--CcH-HHHHHHHHHHHH
Q 003619 593 RFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLP-G--WTG-ARLAQLVQEAAL 651 (807)
Q Consensus 593 RFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~-G--fSg-aDL~~Lv~eAal 651 (807)
+...+| -..+|+.+..-+.+...+|....+.... + |.+ .|...++++--.
T Consensus 245 ---R~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 245 ---RENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ---hhhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 222222 3578888888888888899884443221 1 333 378877777653
No 291
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.51 E-value=0.00049 Score=80.20 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=38.2
Q ss_pred ccccHHHHHHHHHHHHH--hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 003619 427 VAGIDEAVEELQELVRY--LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (807)
Q Consensus 427 VvG~devkeeL~eiV~~--L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I 489 (807)
|.|++.+|..+.-.+-- -+++.- ...++..-++||+|.||||||.+.|.+++-....++..
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tT 513 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTT 513 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEec
Confidence 55666666655422211 112211 11233445799999999999999999999887766543
No 292
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0017 Score=70.98 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=81.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEE-eC--------chhHHHH-hh--hhhHHHHHHHHHHHh-
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVP-------FYQM-AG--------SEFVEVL-VG--VGSARIRDLFKRAKV- 515 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~p-------fi~I-s~--------sel~~~~-vG--~~~~~ir~lF~~A~~- 515 (807)
+.+...|++|| +||+++|+++|..+-+. .-.+ +| +++..-. .| -....+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45678999996 68999999999865221 0000 00 1110000 01 123566766665533
Q ss_pred ---CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCc
Q 003619 516 ---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPG 592 (807)
Q Consensus 516 ---~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpG 592 (807)
....|++||++|.+.. ..-|.||..++. ++.++++|..|+.++.+-|.+++
T Consensus 100 p~~~~~kV~II~~ad~m~~----------------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S-- 153 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV----------------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS-- 153 (290)
T ss_pred cccCCcEEEEeehhhhcCH----------------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--
Confidence 2335999999999753 234788888884 55667888888889999999998
Q ss_pred cccEEEeccCCCHHHHHHHHH
Q 003619 593 RFDRKIRIRAPNAKGRTEILK 613 (807)
Q Consensus 593 RFdr~I~I~lPd~eeR~eILk 613 (807)
|. ..+.|+. +.++..+++.
T Consensus 154 Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 154 RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cc-eeeeCCC-cHHHHHHHHH
Confidence 64 6777865 5555555554
No 293
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.49 E-value=0.0011 Score=69.74 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=48.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH----HHh--hh-----------------------
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE----VLV--GV----------------------- 501 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~----~~v--G~----------------------- 501 (807)
|++.+..++|.||||||||+++..++... +.+.++++..+-.. ... |.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 46667789999999999999976554422 56777776542211 110 00
Q ss_pred --hhHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 502 --GSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 502 --~~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
....+..+...+....|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 01223334444445578999999998865
No 294
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.49 E-value=0.00025 Score=76.45 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=52.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH------hcCCCEEEEeCchhHHHH-hhhhhHHHHHHHHHH--------HhCCC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG------EAGVPFYQMAGSEFVEVL-VGVGSARIRDLFKRA--------KVNKP 518 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~------elg~pfi~Is~sel~~~~-vG~~~~~ir~lF~~A--------~~~~P 518 (807)
.++....+||.||+|.||+.||+.+-. .+..+|+.+||..+...- ...--..++..|.-| +....
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 445566799999999999999999854 457899999998764320 000001122222222 23345
Q ss_pred cEEEeccchhhhhhh
Q 003619 519 SVIFIDEIDALATRR 533 (807)
Q Consensus 519 sILfIDEID~L~~~r 533 (807)
.+||+|||..++...
T Consensus 284 gmlfldeigelgade 298 (531)
T COG4650 284 GMLFLDEIGELGADE 298 (531)
T ss_pred ceEehHhhhhcCccH
Confidence 699999999987553
No 295
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.49 E-value=0.00021 Score=86.27 Aligned_cols=119 Identities=20% Similarity=0.147 Sum_probs=63.3
Q ss_pred cccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc-ccccccCCCCCcccCccc-cc
Q 003619 353 SKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRS-KAEARVDGSTGVKFSDVA-GI 430 (807)
Q Consensus 353 ~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~F~dVv-G~ 430 (807)
-...|.+|.|++.++..+...+..++..+...............+..+..+....... ...........+.|++|. .+
T Consensus 386 lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y 465 (694)
T TIGR01846 386 LVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRY 465 (694)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEc
Confidence 3346789999999988887777777766655443322222211121111110000000 000011112346666664 22
Q ss_pred HHH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 431 DEA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 431 dev-keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.. +..+..+ .+.++++..+.|+|++|+|||||++.+++..
T Consensus 466 ~~~~~~il~~i-----------~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 466 APDSPEVLSNL-----------NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred CCCCccccccc-----------eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 111 1112111 2446777889999999999999999999843
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.49 E-value=0.00049 Score=76.04 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=52.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHH----hh------------hhhHHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VG------------VGSARIRDLFKRAK 514 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~----vG------------~~~~~ir~lF~~A~ 514 (807)
|++.+.-++|+||||||||+||..++.+. +.++++++..+..+.. .| ..++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999988776544 6677777764433210 01 11222322333345
Q ss_pred hCCCcEEEeccchhhhhh
Q 003619 515 VNKPSVIFIDEIDALATR 532 (807)
Q Consensus 515 ~~~PsILfIDEID~L~~~ 532 (807)
...+++|+||-+.++.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998753
No 297
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0037 Score=71.12 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=74.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 539 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~ 539 (807)
-++|+||.+||||++++.+.....-..++++..+........ ......+..+.....+.+|||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 789999999999999998888775556666655544332221 111222222222244699999999753
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHH
Q 003619 540 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTE 610 (807)
Q Consensus 540 ~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~e 610 (807)
.....+..+..... . .+++.+++........+-.-+|| ...+.+.+.+..|...
T Consensus 108 -----------~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 -----------DWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGR-GKDLELYPLSFREFLK 161 (398)
T ss_pred -----------hHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCC-ceeEEECCCCHHHHHh
Confidence 23444555443211 1 45555544443333334444678 5678888889888865
No 298
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.46 E-value=0.0001 Score=87.07 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=58.5
Q ss_pred cccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-ccHHH
Q 003619 355 FYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GIDEA 433 (807)
Q Consensus 355 ~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~dev 433 (807)
.+|.+|.|.+.+++.+...+..++..+...............+.....+..+...............+.|+++. .+...
T Consensus 247 ~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~ 326 (569)
T PRK10789 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQT 326 (569)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCC
Confidence 46778999999888887777776665544332222211111111111110000000000000111235555542 22110
Q ss_pred -HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 434 -VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 434 -keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
...++ +- .+.++++..+.|.||+|+|||+|++.+++..
T Consensus 327 ~~~~l~-------~i----~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 327 DHPALE-------NV----NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CCcccc-------Ce----eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 00111 11 2345677789999999999999999999843
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.45 E-value=9.5e-05 Score=87.66 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=59.3
Q ss_pred ccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccc--cccCCCCCcccCccc-cc
Q 003619 354 KFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAE--ARVDGSTGVKFSDVA-GI 430 (807)
Q Consensus 354 ~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~F~dVv-G~ 430 (807)
..+|.++.|.+.+++.+...+..++..+...............+.....+.......... ........+.|+++. .+
T Consensus 265 v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 344 (585)
T TIGR01192 265 VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEF 344 (585)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEEC
Confidence 446788999988888777666666555544332222211111111111110000000000 000112236666664 33
Q ss_pred HHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 431 DEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 431 devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
++.+..++ +- .+.++++..+.|.||+|+|||+|++.+++..
T Consensus 345 ~~~~~~l~-------~i----~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 345 ANSSQGVF-------DV----SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred CCCCcccc-------ce----eEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 21111111 11 2446777889999999999999999998743
No 300
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.44 E-value=0.00094 Score=69.82 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=32.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e---lg~pfi~Is~se 493 (807)
|++.+..++++|+||||||+++.+++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 6777888999999999999999999754 367777776543
No 301
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.44 E-value=8.4e-05 Score=68.87 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAG 483 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg 483 (807)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 302
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.43 E-value=0.00034 Score=87.77 Aligned_cols=139 Identities=29% Similarity=0.368 Sum_probs=90.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH--Hhhh-------hhHHHHHHHHHHHhCCCcEEEeccch
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV--LVGV-------GSARIRDLFKRAKVNKPSVIFIDEID 527 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~--~vG~-------~~~~ir~lF~~A~~~~PsILfIDEID 527 (807)
..+++||.|.||+|||+|..|+|+..|-.++.+|.++-.+- ++|. ++-+.++.--.+.......++|||+.
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhh
Confidence 45689999999999999999999999999999998753221 1221 22223332222223345589999997
Q ss_pred hhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHH--------hhc-CCCCCCceEEEeccCccC------CCCcccCCCc
Q 003619 528 ALATRRQGIFKDTTDHLYNAATQERETTLNQLLI--------ELD-GFDTGKGVIFLAATNRRD------LLDPALLRPG 592 (807)
Q Consensus 528 ~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~--------eLd-g~~~~~~VIVIAATN~pd------~LDpALlRpG 592 (807)
-.. +....-+|..|. ++| .+....+..|.||-|..+ .||..++.
T Consensus 1622 LaS-------------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1622 LAS-------------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred hhH-------------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 532 122233344433 222 123456788999888654 38888887
Q ss_pred cccEEEeccCCCHHHHHHHHHHHhh
Q 003619 593 RFDRKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 593 RFdr~I~I~lPd~eeR~eILk~~L~ 617 (807)
||. ++++...+.++...|.++...
T Consensus 1681 RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1681 RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hhh-eEEecccccchHHHHHHhhCC
Confidence 885 667777777776666665544
No 303
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=0.0011 Score=70.82 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV 484 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~ 484 (807)
..+..++|.||+|+|||+|++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34567999999999999999999987754
No 304
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.42 E-value=0.0005 Score=67.34 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I 489 (807)
.++..|+|+|+||||||++|+++|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3566899999999999999999999999988854
No 305
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.39 E-value=0.0014 Score=67.63 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
|+..+.-++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56667779999999999999999998764 5677777654
No 306
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.39 E-value=0.00023 Score=87.38 Aligned_cols=209 Identities=18% Similarity=0.221 Sum_probs=122.4
Q ss_pred ccCCCCCcccCcccccHHHHHHHHHHHHHhcCh--hhhhhcCCCCC-c-eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRYLKNP--ELFDKMGIKPP-H-GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 415 ~~~~~~~v~F~dVvG~devkeeL~eiV~~L~~p--e~~~~lGl~~p-~-gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
+.++..+....++.|.......+.+.++..+.+ ..|...+.... . .++++||||+|||+.+.++|.+.+..++..|
T Consensus 310 ~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~N 389 (871)
T KOG1968|consen 310 WTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKN 389 (871)
T ss_pred cccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecC
Confidence 344555566677777766554555555443322 12222111111 1 3699999999999999999999999999999
Q ss_pred CchhHHHHh-----hh--hhHHHHHHH---HHHHh-CCCc-EEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHH
Q 003619 491 GSEFVEVLV-----GV--GSARIRDLF---KRAKV-NKPS-VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 558 (807)
Q Consensus 491 ~sel~~~~v-----G~--~~~~ir~lF---~~A~~-~~Ps-ILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~ 558 (807)
.++..+... +. +...+...+ ..... +... ||++||+|.+..... ..-..+.+
T Consensus 390 as~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dR----------------g~v~~l~~ 453 (871)
T KOG1968|consen 390 ASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDR----------------GGVSKLSS 453 (871)
T ss_pred ccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhh----------------hhHHHHHH
Confidence 876543321 11 112222222 01000 1222 899999998765111 01122333
Q ss_pred HHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCC-CccCHHHHHhhCCCC
Q 003619 559 LLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMS-DSVDLSSYAKNLPGW 637 (807)
Q Consensus 559 LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~-~dvdL~~LA~~T~Gf 637 (807)
++. ....-+|+++|..+......+. |-+..++|+.|+.+.+..-+...+....+. .+-.++++...+
T Consensus 454 l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~--- 521 (871)
T KOG1968|consen 454 LCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS--- 521 (871)
T ss_pred HHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc---
Confidence 333 1234577788876665553443 555788999999988877666655443322 233477777766
Q ss_pred cHHHHHHHHHHHHHH
Q 003619 638 TGARLAQLVQEAALV 652 (807)
Q Consensus 638 SgaDL~~Lv~eAal~ 652 (807)
++||+++++.-...
T Consensus 522 -~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 522 -GGDIRQIIMQLQFW 535 (871)
T ss_pred -ccCHHHHHHHHhhh
Confidence 56888888776555
No 307
>PF14516 AAA_35: AAA-like domain
Probab=97.38 E-value=0.0081 Score=66.66 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH-------HHhh----------------------h--h
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VLVG----------------------V--G 502 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~-------~~vG----------------------~--~ 502 (807)
++.-+.|.||..+|||+|...+.+.+ +...+++++..+.. .+.. . .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 45578999999999999999987654 67777777654311 0000 0 1
Q ss_pred hHHHHHHHHHH---HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE-EEecc
Q 003619 503 SARIRDLFKRA---KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI-FLAAT 578 (807)
Q Consensus 503 ~~~ir~lF~~A---~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI-VIAAT 578 (807)
.......|+.. ....|=||+|||+|.+..... .....-..+..+...-.....-..+. +++.+
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------------hHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 11223334432 224677999999999875321 11112222222222111111112222 22222
Q ss_pred CccCCCCcccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHHHHHHH
Q 003619 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQE 648 (807)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~~Lv~e 648 (807)
.........-.+|-.+...|.++.-+.++-..+++.|-.. ..... ++.+-..|.|. |-=+..+|..
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGh-P~Lv~~~~~~ 242 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGH-PYLVQKACYL 242 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCC-HHHHHHHHHH
Confidence 2222222222455556667888888899988888777432 22222 77788888774 4444444443
No 308
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00025 Score=74.66 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAG 483 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg 483 (807)
+++|+|+||||||+||.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 309
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.38 E-value=0.00067 Score=69.89 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=44.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh-----cCCCE-------------EEEeCchhHHH---HhhhhhHHHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGE-----AGVPF-------------YQMAGSEFVEV---LVGVGSARIRDLFKRA 513 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~e-----lg~pf-------------i~Is~sel~~~---~vG~~~~~ir~lF~~A 513 (807)
+...+-++|.||+|+|||+|++.++.. .|.++ ..+...+-... .......++..+++.+
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 344567899999999999999999853 34332 11111110000 0011124566677766
Q ss_pred HhCCCcEEEeccchh
Q 003619 514 KVNKPSVIFIDEIDA 528 (807)
Q Consensus 514 ~~~~PsILfIDEID~ 528 (807)
....|.++++||.-.
T Consensus 102 ~~~~p~llllDEp~~ 116 (199)
T cd03283 102 KKGEPVLFLLDEIFK 116 (199)
T ss_pred cCCCCeEEEEecccC
Confidence 556899999999754
No 310
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00014 Score=67.44 Aligned_cols=30 Identities=40% Similarity=0.847 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
|+|.||||+||||+|+.||+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776554
No 311
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.37 E-value=0.00053 Score=80.73 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|.||+|+|||+|++.+++..
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456788889999999999999999999854
No 312
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0034 Score=68.89 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--EEEEe--CchhHHHHhhhhhHHHHHHHHHHHh-----C
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------P--FYQMA--GSEFVEVLVGVGSARIRDLFKRAKV-----N 516 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~elg~-----------p--fi~Is--~sel~~~~vG~~~~~ir~lF~~A~~-----~ 516 (807)
.++..||+|+.|.||+.+++++++.+-+ | ++.++ +.. .+...++.+.+.... .
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccC
Confidence 4557889999999999999999987621 2 22232 111 122345555555422 2
Q ss_pred CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccE
Q 003619 517 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDR 596 (807)
Q Consensus 517 ~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr 596 (807)
...|++||++|.+.. ...|.||..++. ++.++++|..|+.++.+-+.+++ | +.
T Consensus 90 ~~KvvII~~~e~m~~----------------------~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--R-c~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSN----------------------SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--R-CQ 142 (299)
T ss_pred CceEEEEecccccCH----------------------HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--C-eE
Confidence 456999999987642 234677777775 44566666666678888888887 5 46
Q ss_pred EEeccCCCHHHHHHHHHH
Q 003619 597 KIRIRAPNAKGRTEILKI 614 (807)
Q Consensus 597 ~I~I~lPd~eeR~eILk~ 614 (807)
.+.+.+|+.++..+.|..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 889999998887776654
No 313
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.35 E-value=0.00066 Score=75.16 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH-Hh---h------------hhhHHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-LV---G------------VGSARIRDLFKRAK 514 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~-~v---G------------~~~~~ir~lF~~A~ 514 (807)
|++.++-+.|+||||||||+||-.++.++ +...++++..+-.+. +. | ..++.+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56777789999999999999999887543 677888876432221 00 1 11222222223335
Q ss_pred hCCCcEEEeccchhhhhh
Q 003619 515 VNKPSVIFIDEIDALATR 532 (807)
Q Consensus 515 ~~~PsILfIDEID~L~~~ 532 (807)
...+++|+||-+.++.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999998753
No 314
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.34 E-value=0.00021 Score=84.56 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|.||+|+|||+|++.+++..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778889999999999999999999843
No 315
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.32 E-value=0.00012 Score=86.51 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=26.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456778889999999999999999998854
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.30 E-value=0.00042 Score=68.77 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=50.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchhH--------HHHhh-----hhhHHHHHHHHHHHhCC
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFV--------EVLVG-----VGSARIRDLFKRAKVNK 517 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel~--------~~~vG-----~~~~~ir~lF~~A~~~~ 517 (807)
+.+.++..+.|.||+|+|||+|.+.+++.... --+.++..+.. ...++ .+.++.+-.+..|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 34567778999999999999999999986521 11223222111 10011 12345667788888889
Q ss_pred CcEEEeccchh
Q 003619 518 PSVIFIDEIDA 528 (807)
Q Consensus 518 PsILfIDEID~ 528 (807)
|.++++||-..
T Consensus 101 p~illlDEP~~ 111 (163)
T cd03216 101 ARLLILDEPTA 111 (163)
T ss_pred CCEEEEECCCc
Confidence 99999999765
No 317
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00038 Score=69.69 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~ 491 (807)
.|+++||||+||||+|+.|++.++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988764
No 318
>PRK07261 topology modulation protein; Provisional
Probab=97.26 E-value=0.00046 Score=69.27 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
-|+|+|+||+||||||+.|++..+.|++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999988776433
No 319
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0011 Score=66.46 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
....+.++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34579999999999999999999765
No 320
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.25 E-value=0.0011 Score=75.11 Aligned_cols=77 Identities=25% Similarity=0.327 Sum_probs=45.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC-----CEEEEeCchh-------HHHHhh---------hhhHHHH---HHHHHH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGV-----PFYQMAGSEF-------VEVLVG---------VGSARIR---DLFKRA 513 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~-----pfi~Is~sel-------~~~~vG---------~~~~~ir---~lF~~A 513 (807)
+.-.+|.||||+|||+|++.|++.... ..+.+...+. .....| ....+++ .+++.|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999986632 2222222221 111111 1222222 334444
Q ss_pred H----hCCCcEEEeccchhhhhhhc
Q 003619 514 K----VNKPSVIFIDEIDALATRRQ 534 (807)
Q Consensus 514 ~----~~~PsILfIDEID~L~~~r~ 534 (807)
+ .....+||||||+.+.....
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHH
Confidence 3 23556999999999986544
No 321
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.25 E-value=0.00071 Score=79.46 Aligned_cols=118 Identities=17% Similarity=0.086 Sum_probs=62.6
Q ss_pred cccccccCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccccccccCCCCCcccCccc-ccH
Q 003619 353 SKFYEFYTFGGLSASLEMLKPITLVILTMVLLIRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFSDVA-GID 431 (807)
Q Consensus 353 ~~~~~~~~~g~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~dVv-G~d 431 (807)
...+|.+|.|.+.+++.+...+..++..+...............+..+..+... ..............+.++++. .++
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~-~~~~~~~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP-SRDPAMPLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cccCCCCCCCCCCeEEEEEEEEEcC
Confidence 344678899999988888877777776665544322222221111111111000 000000001111235666654 221
Q ss_pred HH-HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 432 EA-VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 432 ev-keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.. +..++ +- .+.++++..+.|.||+|+|||+|++.+++..
T Consensus 328 ~~~~~~l~-------~~----~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 328 GGKKPTLR-------GI----SFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred CCCccccc-------cc----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 10 11111 11 2446778889999999999999999999854
No 322
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.00083 Score=75.69 Aligned_cols=111 Identities=22% Similarity=0.388 Sum_probs=62.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEeCchhH-------HH---Hhhh------hhHHHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSEFV-------EV---LVGV------GSARIRDLFKRA 513 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~el----g-~pfi~Is~sel~-------~~---~vG~------~~~~ir~lF~~A 513 (807)
+..+..++|+||+|+|||+++..||..+ + ..+..+....+. .. ..|. ....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 4556789999999999999999999763 3 244445444331 10 1111 1111222222
Q ss_pred HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC-CCceEEEeccCccCCCCccc
Q 003619 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIFLAATNRRDLLDPAL 588 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~-~~~VIVIAATN~pd~LDpAL 588 (807)
+....++|+||....... ...+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 212 ~l~~~DlVLIDTaG~~~~---------------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQR---------------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCcc---------------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 234567999999864221 1123344444443332 34578888888777665443
No 323
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.23 E-value=0.0016 Score=67.72 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=31.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~se 493 (807)
|++.+.-+.|+||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56777789999999999999999998543 25677777644
No 324
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.22 E-value=0.0032 Score=57.50 Aligned_cols=23 Identities=48% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el 482 (807)
+++++||+|+|||+++-.++.+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887755
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.20 E-value=0.0014 Score=63.82 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=48.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCc---hhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccch
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS---EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEID 527 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~s---el~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID 527 (807)
+.+.++..+.|.||+|+|||+|++++++.... --+.++.. .+...+. +.++.+-.+..|....|.++++||-.
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 34567778999999999999999999986521 01111110 0000011 22345556777778899999999976
Q ss_pred h
Q 003619 528 A 528 (807)
Q Consensus 528 ~ 528 (807)
.
T Consensus 99 ~ 99 (144)
T cd03221 99 N 99 (144)
T ss_pred c
Confidence 5
No 326
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.001 Score=63.30 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~ 498 (807)
|+++||||+|||++|+.+++.++ ...++...+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999998 4445555555443
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.15 E-value=0.001 Score=71.91 Aligned_cols=69 Identities=28% Similarity=0.451 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC----------CEEEEe-CchhHHHHhhh-------------hhHHHHHHHHHHH
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGV----------PFYQMA-GSEFVEVLVGV-------------GSARIRDLFKRAK 514 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~----------pfi~Is-~sel~~~~vG~-------------~~~~ir~lF~~A~ 514 (807)
.+++|.||+|+|||+|.+++++.... ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987632 222221 12222111110 1112334566667
Q ss_pred hCCCcEEEeccch
Q 003619 515 VNKPSVIFIDEID 527 (807)
Q Consensus 515 ~~~PsILfIDEID 527 (807)
...|.++++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 328
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.0015 Score=67.50 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---G------VPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g------~pfi~Is~se 493 (807)
|++.+.-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56777789999999999999999998753 3 5667776643
No 329
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.14 E-value=0.00039 Score=71.03 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=57.3
Q ss_pred EEEEcCCCChHHHHHHHH-HHh---cCCCEEEEeCchhHHHHhhh----hhH-------------HHHHHHHHHHhCCCc
Q 003619 461 VLLEGPPGCGKTLVAKAI-AGE---AGVPFYQMAGSEFVEVLVGV----GSA-------------RIRDLFKRAKVNKPS 519 (807)
Q Consensus 461 VLL~GPPGTGKT~LArAL-A~e---lg~pfi~Is~sel~~~~vG~----~~~-------------~ir~lF~~A~~~~Ps 519 (807)
.+++|.||+|||+.|-.. ... .|.+++. |...+.-..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988655 432 3666665 544222110000 000 001111111112567
Q ss_pred EEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccCCCccccEEEe
Q 003619 520 VIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIR 599 (807)
Q Consensus 520 ILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALlRpGRFdr~I~ 599 (807)
+|+|||++.+.+.+.... ......+ +.+.. ....++-+|.+|..+..+|+.+++ +.+.+++
T Consensus 82 liviDEa~~~~~~r~~~~------------~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~ 142 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG------------KKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYH 142 (193)
T ss_dssp EEEETTGGGTSB---T-T----------------HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEE
T ss_pred EEEEECChhhcCCCcccc------------ccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEE
Confidence 999999999887764310 0111222 22222 223456777889999999999886 7777776
Q ss_pred ccCC
Q 003619 600 IRAP 603 (807)
Q Consensus 600 I~lP 603 (807)
+..+
T Consensus 143 ~~k~ 146 (193)
T PF05707_consen 143 CRKL 146 (193)
T ss_dssp EEE-
T ss_pred EEee
Confidence 6654
No 330
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.14 E-value=0.0061 Score=68.29 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=92.1
Q ss_pred CcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH------H
Q 003619 425 SDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV------L 498 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~------~ 498 (807)
..+.+.+.+...|..++... + -..|..+.|+|-+|||||.+.+.+-+.++.|.+.++|-+...- .
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~--~-------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN--S-------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCC--C-------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 45677888888887664321 1 1346678999999999999999999999999999988554321 0
Q ss_pred ---h------h----hhhHHHHH---HHHH--HHhC--CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHH
Q 003619 499 ---V------G----VGSARIRD---LFKR--AKVN--KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQ 558 (807)
Q Consensus 499 ---v------G----~~~~~ir~---lF~~--A~~~--~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~ 558 (807)
+ | .....+.+ .|.+ +..+ .--+|++|.+|.+.+.. ...++.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~-------------------a~ll~~ 137 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMD-------------------AILLQC 137 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccc-------------------hHHHHH
Confidence 0 0 01122222 2322 2112 23478899999986321 122333
Q ss_pred HHHhhcCCCCCCceEEEeccC-ccCCCCcccCCCcccc-EEEeccCCCHHHHHHHHHHHhh
Q 003619 559 LLIELDGFDTGKGVIFLAATN-RRDLLDPALLRPGRFD-RKIRIRAPNAKGRTEILKIHAS 617 (807)
Q Consensus 559 LL~eLdg~~~~~~VIVIAATN-~pd~LDpALlRpGRFd-r~I~I~lPd~eeR~eILk~~L~ 617 (807)
+++.-+-...+ .+.+|.+.. .+.. -+.+-|-++ ..+++|.|+.++.+.|+..--.
T Consensus 138 l~~L~el~~~~-~i~iils~~~~e~~---y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 138 LFRLYELLNEP-TIVIILSAPSCEKQ---YLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred HHHHHHHhCCC-ceEEEEeccccHHH---hhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 32222211222 333333322 2222 122223333 4789999999999999865443
No 331
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.13 E-value=0.00097 Score=71.13 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=63.5
Q ss_pred CCCCCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeC-c
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAG-S 492 (807)
Q Consensus 417 ~~~~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~-s 492 (807)
......+++++.-.....+.+.+++... ++..+++++.||+|+|||++++++..... ..++.+.. .
T Consensus 96 ~~~~~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 96 FSSKPFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp ETSS--CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cccccccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 3445678899876666666666665542 12345899999999999999999998763 33444331 1
Q ss_pred hhHHH------Hh-hhhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 493 EFVEV------LV-GVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 493 el~~~------~v-G~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
++.-. +. ........+++..+....|++|+++|+-.
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 22110 00 01334567788888889999999999964
No 332
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.10 E-value=0.0031 Score=72.46 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=36.1
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP 485 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p 485 (807)
.|.|.+++|+.+.-++--=....+=..+.++..-+|||.|.|||.||.|.+-+-.-+-+-
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIa 391 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIA 391 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceE
Confidence 366777777766433221000001112223444579999999999999999987655433
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.10 E-value=0.0013 Score=76.10 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=55.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHh------hh--------hhHHHHHHHHHHHhC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLV------GV--------GSARIRDLFKRAKVN 516 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~v------G~--------~~~~ir~lF~~A~~~ 516 (807)
|+.++.-++|.|+||+|||+|+..++... +.++++++..+-..... |. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56777789999999999999999997754 45788888754333211 10 112244555566667
Q ss_pred CCcEEEeccchhhhh
Q 003619 517 KPSVIFIDEIDALAT 531 (807)
Q Consensus 517 ~PsILfIDEID~L~~ 531 (807)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998753
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.10 E-value=0.0033 Score=65.26 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~se 493 (807)
|++.+..+|+.||||||||+++..++.+. +-++++++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 67778889999999999999999876432 78888887543
No 335
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.08 E-value=0.00036 Score=68.89 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=37.3
Q ss_pred ccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEeCchh
Q 003619 427 VAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP---FYQMAGSEF 494 (807)
Q Consensus 427 VvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p---fi~Is~sel 494 (807)
++|.++..++|...+. .. ....++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888888877654 11 12345789999999999999999997766332 777777655
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=97.08 E-value=0.009 Score=63.57 Aligned_cols=39 Identities=38% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
|+.++.-++|.|+||+|||+++-.++.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 67777789999999999999999887644 7777777654
No 337
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.08 E-value=0.00066 Score=79.73 Aligned_cols=64 Identities=25% Similarity=0.451 Sum_probs=45.8
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEeC
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA-GVPFYQMAG 491 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el-g~pfi~Is~ 491 (807)
.-|+|+.|++++++++-+.+.... ..++ ...+-++|.||||+|||+||++||+.+ ..|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa-----~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAA-----QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHH-----HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 458899999999998877764311 1111 233478899999999999999999866 346665533
No 338
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.07 E-value=0.0057 Score=64.42 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e---lg~pfi~Is~se 493 (807)
|++++..+||+||||||||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 6788888999999999999999877553 366777776543
No 339
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.06 E-value=0.0014 Score=66.63 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchh---HHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF---VEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel---~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
++++.-+.|.||+|+|||+|++.+++.... --+.+++..+ .....-.+.++.+-.+..+....|.++++||-..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 456667899999999999999999986421 1122221110 0000011234556667777888999999999765
No 340
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.04 E-value=0.0036 Score=62.73 Aligned_cols=76 Identities=20% Similarity=0.317 Sum_probs=49.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchhH-------------------------HHHhh--hhh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEFV-------------------------EVLVG--VGS 503 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel~-------------------------~~~vG--~~~ 503 (807)
+.+.++..+.|.||+|+|||+|++.+++.... --+.+++.+.. +.... .+.
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 34567778999999999999999999986421 11222221110 00000 123
Q ss_pred HHHHHHHHHHHhCCCcEEEeccchh
Q 003619 504 ARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 504 ~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
++.+-.+..|....|.++++||...
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~ 127 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTV 127 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4556667777888999999999875
No 341
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.03 E-value=0.0031 Score=69.59 Aligned_cols=160 Identities=20% Similarity=0.338 Sum_probs=94.7
Q ss_pred cccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHH-HH--hcCCCEEEEeCchhHH--H--
Q 003619 426 DVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAI-AG--EAGVPFYQMAGSEFVE--V-- 497 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArAL-A~--elg~pfi~Is~sel~~--~-- 497 (807)
.+.|+.+..+.+.+++.. +... ....+++.||.|+|||++.... +. +.+-.|+.+....+.. .
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 467888777888888776 3222 2347999999999999876644 33 5666666554332211 1
Q ss_pred -----------------HhhhhhHHHHHHHHHHHhC-----CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHH
Q 003619 498 -----------------LVGVGSARIRDLFKRAKVN-----KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETT 555 (807)
Q Consensus 498 -----------------~vG~~~~~ir~lF~~A~~~-----~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~t 555 (807)
..|.....+..++...+.. .+.|.++||||.+.+.. .+..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------------rQtl 157 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------------RQTL 157 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------------hhHH
Confidence 0111222233333333221 23355568999876432 2334
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCccCCC---CcccCCCccccEE-EeccCC-CHHHHHHHHHHHh
Q 003619 556 LNQLLIELDGFDTGKGVIFLAATNRRDLL---DPALLRPGRFDRK-IRIRAP-NAKGRTEILKIHA 616 (807)
Q Consensus 556 Ln~LL~eLdg~~~~~~VIVIAATN~pd~L---DpALlRpGRFdr~-I~I~lP-d~eeR~eILk~~L 616 (807)
+..++..-+ ....++.||+.|.+.+.+ ...+.+ ||... |++.++ +..+-..+++..+
T Consensus 158 lYnlfDisq--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 158 LYNLFDISQ--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHh--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 444443322 234578999999887754 456666 88654 766554 5778888888776
No 342
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0014 Score=68.46 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhCCCcEEEeccchhhh
Q 003619 502 GSARIRDLFKRAKVNKPSVIFIDEIDALA 530 (807)
Q Consensus 502 ~~~~ir~lF~~A~~~~PsILfIDEID~L~ 530 (807)
+.++.|-.+.+|....|.|+++||..+-.
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSAL 167 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSAL 167 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccC
Confidence 45667888999999999999999987643
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.0015 Score=66.24 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------------CEEEEeCchhHHHHh------h------hhhHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-------------PFYQMAGSEFVEVLV------G------VGSARIR 507 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-------------pfi~Is~sel~~~~v------G------~~~~~ir 507 (807)
+.+.++.-+.|.||+|+|||||.+++....|. ++.++.-.++...+- . .+.++.+
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 34566677999999999999999999743321 122211111111110 0 0234556
Q ss_pred HHHHHHHhCC--CcEEEeccchh
Q 003619 508 DLFKRAKVNK--PSVIFIDEIDA 528 (807)
Q Consensus 508 ~lF~~A~~~~--PsILfIDEID~ 528 (807)
-.+..|.... |.++++||...
T Consensus 96 l~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcc
Confidence 6677777788 99999999765
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.00 E-value=0.011 Score=67.99 Aligned_cols=38 Identities=29% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCch
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~se 493 (807)
..|..++++|++|+|||+++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 457789999999999999999998766 55666666644
No 345
>PRK09354 recA recombinase A; Provisional
Probab=96.98 E-value=0.0029 Score=70.72 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=51.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHH-Hh---h------------hhhHHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEV-LV---G------------VGSARIRDLFKRAK 514 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~-~v---G------------~~~~~ir~lF~~A~ 514 (807)
|++.++-++|+||||||||+|+-.++.+. +...++++..+-.+. +. | ..++.+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777789999999999999999876543 677777776442221 00 0 11222222222335
Q ss_pred hCCCcEEEeccchhhhh
Q 003619 515 VNKPSVIFIDEIDALAT 531 (807)
Q Consensus 515 ~~~PsILfIDEID~L~~ 531 (807)
...+++|+||-+.++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999875
No 346
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.97 E-value=0.001 Score=68.22 Aligned_cols=68 Identities=28% Similarity=0.447 Sum_probs=43.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEeCc-hhHH---------HHhhhhhHHHHHHHHHHHhCCCcEEEecc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGV----PFYQMAGS-EFVE---------VLVGVGSARIRDLFKRAKVNKPSVIFIDE 525 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~----pfi~Is~s-el~~---------~~vG~~~~~ir~lF~~A~~~~PsILfIDE 525 (807)
-+++.||+|+|||++++++++.... .++.+..+ ++.. .-++.....+.+.+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887642 22222111 1110 01122223355666777778899999999
Q ss_pred ch
Q 003619 526 ID 527 (807)
Q Consensus 526 ID 527 (807)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 347
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.97 E-value=0.0011 Score=73.85 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCEEEEeC-chhHH---------HHhhhhhHHHHHHHHHHHhCCCcEEE
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMAG-SEFVE---------VLVGVGSARIRDLFKRAKVNKPSVIF 522 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~elg----~pfi~Is~-sel~~---------~~vG~~~~~ir~lF~~A~~~~PsILf 522 (807)
+...++++||+|+|||++++++.+... ..++.+.- .++.. .-.|.......+.+..+....|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345789999999999999999988664 22333321 12110 01122222356667777788999999
Q ss_pred eccch
Q 003619 523 IDEID 527 (807)
Q Consensus 523 IDEID 527 (807)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0056 Score=69.52 Aligned_cols=109 Identities=13% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEeCchhHHH-------Hh---h------hhhHHHHHHHHHH
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA-------GVPFYQMAGSEFVEV-------LV---G------VGSARIRDLFKRA 513 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el-------g~pfi~Is~sel~~~-------~v---G------~~~~~ir~lF~~A 513 (807)
.|..++|+||+|+|||+++..+|..+ +..+..+++..+... |. | .....+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 46689999999999999999998754 234444444332111 11 1 111223333333
Q ss_pred HhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCC-CceEEEeccCccCCCCcc
Q 003619 514 KVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTG-KGVIFLAATNRRDLLDPA 587 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~-~~VIVIAATN~pd~LDpA 587 (807)
.....+|+||.+...... . ..+.++...++....+ ..++|+.+|.....+...
T Consensus 252 -~~~~DlVLIDTaGr~~~~-----------------~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 252 -SKDFDLVLVDTIGKSPKD-----------------F---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred -hCCCCEEEEcCCCCCccC-----------------H---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 245679999998764311 0 1133333333433323 467888888776665533
No 349
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0016 Score=64.89 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=47.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchh---------------------HHHHh----hhhhHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF---------------------VEVLV----GVGSAR 505 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel---------------------~~~~v----G~~~~~ 505 (807)
+.+.++..+.|.||+|+|||+|++.+++.... --+.+++... ...-+ =.+.++
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 34567778999999999999999999986521 0112222111 00000 012334
Q ss_pred HHHHHHHHHhCCCcEEEeccchh
Q 003619 506 IRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 506 ir~lF~~A~~~~PsILfIDEID~ 528 (807)
.+-.+..|....|.++++||-..
T Consensus 103 ~rl~la~al~~~p~llllDEP~~ 125 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATS 125 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCc
Confidence 45567777778999999999765
No 350
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.94 E-value=0.0048 Score=59.59 Aligned_cols=52 Identities=29% Similarity=0.411 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHHHH-hcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 425 SDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 425 ~dVvG~devkeeL~eiV~~-L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.+|.|+.-+.+.+.+.+.. +.++. -+.|--+-++|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4689999998888877775 54431 1223345589999999999999999975
No 351
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.93 E-value=0.0055 Score=62.95 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=40.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHH----hhhhhHHHHHHHHHHH---------hCCCcEEE
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVL----VGVGSARIRDLFKRAK---------VNKPSVIF 522 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~----vG~~~~~ir~lF~~A~---------~~~PsILf 522 (807)
+-.+|.||||||||++++.+...+ +..++.+..+.-.... .+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357889999999999999986543 6677777654322111 1111112222222111 12346999
Q ss_pred eccchhhh
Q 003619 523 IDEIDALA 530 (807)
Q Consensus 523 IDEID~L~ 530 (807)
|||+..+.
T Consensus 99 VDEasmv~ 106 (196)
T PF13604_consen 99 VDEASMVD 106 (196)
T ss_dssp ESSGGG-B
T ss_pred EecccccC
Confidence 99998764
No 352
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.001 Score=83.32 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHhCCCcEEEeccchhhhhh
Q 003619 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATR 532 (807)
Q Consensus 502 ~~~~ir~lF~~A~~~~PsILfIDEID~L~~~ 532 (807)
+.++.|-++.+|...+|.||+|||+.+-.+.
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 4577888999999999999999999876543
No 353
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0038 Score=66.42 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~ 491 (807)
|+.++.-++|.|+||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56777789999999999999999887653 667777765
No 354
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.90 E-value=0.0028 Score=63.08 Aligned_cols=76 Identities=30% Similarity=0.490 Sum_probs=49.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------CEEEEeCc------hhHHHHh------hhhhHHHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV-----------PFYQMAGS------EFVEVLV------GVGSARIRDL 509 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~-----------pfi~Is~s------el~~~~v------G~~~~~ir~l 509 (807)
+.+.++.-+.|.||+|+|||+|++.+++.... .+-++.-. ...+... =.+.++.+-.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence 34567778999999999999999999986521 11111100 1111110 0123456667
Q ss_pred HHHHHhCCCcEEEeccchh
Q 003619 510 FKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 510 F~~A~~~~PsILfIDEID~ 528 (807)
+..|....|.++++||-..
T Consensus 102 laral~~~p~~lllDEPt~ 120 (166)
T cd03223 102 FARLLLHKPKFVFLDEATS 120 (166)
T ss_pred HHHHHHcCCCEEEEECCcc
Confidence 7788888999999999765
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=96.90 E-value=0.0019 Score=85.10 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.1
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++.-+.|+||+|+|||+|++++.++.
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1622)
T PLN03130 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGEL 667 (1622)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345667779999999999999999999976
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=96.89 E-value=0.0015 Score=85.40 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=26.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++.-+.|+||+|+|||+|++++.++.
T Consensus 638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 638 LEIPVGSLVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 446677789999999999999999999866
No 357
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.88 E-value=0.0055 Score=63.82 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 358
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.0066 Score=67.72 Aligned_cols=74 Identities=27% Similarity=0.325 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH-------HHh---hh----------hhHHHHHHHHHH
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE-------VLV---GV----------GSARIRDLFKRA 513 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~-------~~v---G~----------~~~~ir~lF~~A 513 (807)
.|.-++|+||+|+|||+++..+|..+ +..+..+++..+.. .+. |. ....+.+.++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 46679999999999999888888754 55565565543211 110 10 012233444555
Q ss_pred HhCCCcEEEeccchhhh
Q 003619 514 KVNKPSVIFIDEIDALA 530 (807)
Q Consensus 514 ~~~~PsILfIDEID~L~ 530 (807)
+....++|+||....+.
T Consensus 219 ~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 219 KARGIDVVLIDTAGRMH 235 (336)
T ss_pred HhCCCCEEEEECCCccC
Confidence 55556799999886643
No 359
>PRK06762 hypothetical protein; Provisional
Probab=96.88 E-value=0.0032 Score=62.04 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=32.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
|.-++|+|+||+|||++|+.+++.++..++.++...+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~ 41 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD 41 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH
Confidence 3468899999999999999999998766777776665543
No 360
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.88 E-value=0.00063 Score=78.17 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.+.++.++-+.||+|+|||+|+|.+.+
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHc
Confidence 4466777899999999999999999976
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.87 E-value=0.012 Score=59.38 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=46.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH-Hhhhh----------------hHHHHHHHHHHHhCCCcEEE
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV-LVGVG----------------SARIRDLFKRAKVNKPSVIF 522 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~-~vG~~----------------~~~ir~lF~~A~~~~PsILf 522 (807)
.+|+.|+||+|||++|..++.+.+.+++++......+. +.... ...+..++... ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888877765432211 10100 00122223221 23456899
Q ss_pred eccchhhhhh
Q 003619 523 IDEIDALATR 532 (807)
Q Consensus 523 IDEID~L~~~ 532 (807)
||-+..+...
T Consensus 82 ID~Lt~~~~n 91 (170)
T PRK05800 82 VDCLTTWVTN 91 (170)
T ss_pred ehhHHHHHHH
Confidence 9999988654
No 362
>PRK13947 shikimate kinase; Provisional
Probab=96.87 E-value=0.001 Score=65.76 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999997644
No 363
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.86 E-value=0.0042 Score=64.78 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAG 491 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~ 491 (807)
|+.++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67788889999999999999999886643 778888774
No 364
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.86 E-value=0.0023 Score=83.51 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=27.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg 483 (807)
+.++++..+.|+||+|+|||||++.|.+-..
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4567888999999999999999999998655
No 365
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.85 E-value=0.005 Score=61.49 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=48.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchh--------------------------HHHHhhhhhHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------------------------VEVLVGVGSAR 505 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel--------------------------~~~~vG~~~~~ 505 (807)
.+.++.-+.|.||+|+|||+|++.+++.... --+.+++.++ .+.. =.+.++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l-LS~G~~ 102 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI-LSGGQR 102 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC-cCHHHH
Confidence 3456667999999999999999999986421 0111221110 0000 112345
Q ss_pred HHHHHHHHHhCCCcEEEeccchh
Q 003619 506 IRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 506 ir~lF~~A~~~~PsILfIDEID~ 528 (807)
.+-.+..|....|.++++||-..
T Consensus 103 qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc
Confidence 66677888888999999999765
No 366
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0054 Score=75.43 Aligned_cols=139 Identities=23% Similarity=0.319 Sum_probs=91.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEeCchhH--HHHhhhhhHHHHHHHHHHHh-CCCcEEEecc
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA----------GVPFYQMAGSEFV--EVLVGVGSARIRDLFKRAKV-NKPSVIFIDE 525 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el----------g~pfi~Is~sel~--~~~vG~~~~~ir~lF~~A~~-~~PsILfIDE 525 (807)
++-+|+|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+.+++++.+.+.. ...-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 466999999999999999999855 2345555554333 23567788899999988874 4455899999
Q ss_pred chhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccC-----CCCcccCCCccccEEEec
Q 003619 526 IDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRD-----LLDPALLRPGRFDRKIRI 600 (807)
Q Consensus 526 ID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd-----~LDpALlRpGRFdr~I~I 600 (807)
++-+.+.... . + .....+ +|..+- ..+++-+|+||...+ .-||++-+ ||+. +.+
T Consensus 289 lh~lvg~g~~--~---------~---~~d~~n-lLkp~L---~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN--Y---------G---AIDAAN-LLKPLL---ARGGLWCIGATTLETYRKCIEKDPALER--RWQL-VLV 347 (898)
T ss_pred eeeeecCCCc--c---------h---HHHHHH-hhHHHH---hcCCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEe
Confidence 9998755322 0 0 111122 222222 123488888877433 35899999 9975 458
Q ss_pred cCCCHHHHHHHHHHHhhc
Q 003619 601 RAPNAKGRTEILKIHASK 618 (807)
Q Consensus 601 ~lPd~eeR~eILk~~L~~ 618 (807)
+.|+.+....||......
T Consensus 348 ~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSER 365 (898)
T ss_pred ccCcccchhhhhhhhhhh
Confidence 888877766677654443
No 367
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.83 E-value=0.0044 Score=70.40 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg 483 (807)
+..+..++|+||||+|||+|++.+++...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34556699999999999999999999753
No 368
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0058 Score=64.01 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
.++...-.-|.||+|||||++.|++-+
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHh
Confidence 344555678999999999999999976
No 369
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0021 Score=63.71 Aligned_cols=33 Identities=27% Similarity=0.669 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
..+||++|-||||||+++.++|...+.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 347999999999999999999999998887653
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.002 Score=63.02 Aligned_cols=75 Identities=29% Similarity=0.439 Sum_probs=48.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEEeCchhHH-------HHhh-----hhhHHHHHHHHHHHhCCCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSEFVE-------VLVG-----VGSARIRDLFKRAKVNKPS 519 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~p--fi~Is~sel~~-------~~vG-----~~~~~ir~lF~~A~~~~Ps 519 (807)
.+.++..+.|.||+|+|||+|++++++..... -+.++...... ..++ .+....+-.+..+....|.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPD 100 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCC
Confidence 34566789999999999999999999876321 13333322110 0011 1233455556777777899
Q ss_pred EEEeccchh
Q 003619 520 VIFIDEIDA 528 (807)
Q Consensus 520 ILfIDEID~ 528 (807)
++++||...
T Consensus 101 i~ilDEp~~ 109 (157)
T cd00267 101 LLLLDEPTS 109 (157)
T ss_pred EEEEeCCCc
Confidence 999999875
No 371
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0047 Score=61.71 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCc--------------------hh------HHHHhhhhhHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGS--------------------EF------VEVLVGVGSAR 505 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~s--------------------el------~~~~vG~~~~~ 505 (807)
.+.++..+.|.||+|+|||+|++.+++.... --+.+++. .+ .+...=.+.++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 3556677999999999999999999985410 00111110 00 01110112344
Q ss_pred HHHHHHHHHhCCCcEEEeccchhh
Q 003619 506 IRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 506 ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.+-.+..|....|.++++||-..-
T Consensus 102 qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccC
Confidence 566777888889999999998763
No 372
>PRK03839 putative kinase; Provisional
Probab=96.77 E-value=0.0011 Score=66.29 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987653
No 373
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.77 E-value=0.013 Score=60.79 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEeC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAG 491 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e---lg~pfi~Is~ 491 (807)
|+..+..++|.||||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6778888999999999999999987643 2556666664
No 374
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.77 E-value=0.0013 Score=63.48 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
+|+|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999999887543
No 375
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.77 E-value=0.0011 Score=72.72 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=47.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeC-chhH-------HHHhhhhhHHHHHHHHHHHhCCCcEEEec
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAG-SEFV-------EVLVGVGSARIRDLFKRAKVNKPSVIFID 524 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~-sel~-------~~~vG~~~~~ir~lF~~A~~~~PsILfID 524 (807)
.++++++||+|+|||++++++++.. +..++.+.- .++. ..........+.+++..+....|+.|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4589999999999999999999875 233333321 1111 00011122256778888888999999999
Q ss_pred cchh
Q 003619 525 EIDA 528 (807)
Q Consensus 525 EID~ 528 (807)
|+-.
T Consensus 212 EiR~ 215 (299)
T TIGR02782 212 EVRG 215 (299)
T ss_pred ccCC
Confidence 9853
No 376
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.76 E-value=0.0076 Score=64.80 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.++.+.-+.|.||.|||||||.|++++-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3455667889999999999999999983
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.75 E-value=0.0016 Score=66.03 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=46.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeCc-hhHH---HH----------hhhhhHHHHHHHHHHHhCCCc
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGS-EFVE---VL----------VGVGSARIRDLFKRAKVNKPS 519 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~s-el~~---~~----------vG~~~~~ir~lF~~A~~~~Ps 519 (807)
+.+..++|.||+|+|||++++++++... ...+.+... ++.. .+ .+.......+++..+....|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 4456899999999999999999998652 222222111 1100 00 011123456677777788999
Q ss_pred EEEeccch
Q 003619 520 VIFIDEID 527 (807)
Q Consensus 520 ILfIDEID 527 (807)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999985
No 378
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.75 E-value=0.018 Score=59.80 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=31.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~se 493 (807)
|++++..++|.|+||+|||+++..++.+. +.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 66777789999999999999999887543 67777776643
No 379
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.74 E-value=0.0042 Score=63.66 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+..+.-++|+||.|+|||++.+.++.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34445699999999999999999983
No 380
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0017 Score=72.68 Aligned_cols=26 Identities=54% Similarity=0.805 Sum_probs=21.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.++.-+-|.||+||||||+.|.||+
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444477999999999999999998
No 381
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.73 E-value=0.0013 Score=86.21 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.++++..+.|+|++|+|||+|++++.+-
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678888999999999999999999983
No 382
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.73 E-value=0.02 Score=62.29 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG 483 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg 483 (807)
..|..|.|.|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999987663
No 383
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.012 Score=62.99 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e---lg~pfi~Is~s 492 (807)
|++++..++++||||||||+++..+|.+ .+-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5677778999999999999999988653 25677766643
No 384
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.73 E-value=0.0016 Score=65.23 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=32.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
++-++|.|+||+|||++|++++..++.+++.++...+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 346899999999999999999999988888776655543
No 385
>PRK10536 hypothetical protein; Provisional
Probab=96.73 E-value=0.0095 Score=64.11 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=32.4
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
..+..|.+.+.....+...+. + ...+++.||+|||||+||.+++.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~-----------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---S-----------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---c-----------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445556666666555544332 1 126899999999999999999884
No 386
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.022 Score=64.86 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhH----HHHh------------hhhhHHHHHHHHHHHh-C
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV----EVLV------------GVGSARIRDLFKRAKV-N 516 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~----~~~v------------G~~~~~ir~lF~~A~~-~ 516 (807)
.++.++|.||+|+|||+++..||..+ +..+..+++..+. +.+. ......+.+.+..+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999999766 4455555553321 1111 1233445555555543 2
Q ss_pred CCcEEEeccchh
Q 003619 517 KPSVIFIDEIDA 528 (807)
Q Consensus 517 ~PsILfIDEID~ 528 (807)
..++||||-...
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 457999997654
No 387
>PRK13948 shikimate kinase; Provisional
Probab=96.71 E-value=0.0035 Score=63.98 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=34.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhh
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG 500 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG 500 (807)
+++..|+|.|.+|+|||++++.+|+.++.+|+..+ .+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45678999999999999999999999999998544 44444443
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0091 Score=60.70 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.+.++..+.|.||+|+|||+|++.+++.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3556677999999999999999999973
No 389
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.70 E-value=0.0049 Score=61.93 Aligned_cols=76 Identities=28% Similarity=0.436 Sum_probs=48.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchh--------HH---------------HHhh------h
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF--------VE---------------VLVG------V 501 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel--------~~---------------~~vG------~ 501 (807)
+.+.++.-+.|.||+|+|||+|++.+++.... --+.+++.+. .. .+.. .
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34566778999999999999999999986521 1122222111 00 0000 0
Q ss_pred hhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 502 GSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 502 ~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
+.++.+-.+..|....|.++++||-..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~ 126 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTS 126 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 234455667777788999999999765
No 390
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.68 E-value=0.0044 Score=65.41 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=24.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.++.+.-+.|.||+|||||||...++.
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456666799999999999999999986
No 391
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.68 E-value=0.024 Score=69.99 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=81.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCc--h-----hHHHHhhhh-----------------------hHHHHH
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS--E-----FVEVLVGVG-----------------------SARIRD 508 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~s--e-----l~~~~vG~~-----------------------~~~ir~ 508 (807)
+-++|+||+|.|||+++...+...+ ++..++.. + |...+.... ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4689999999999999999887766 66555442 1 111100000 001122
Q ss_pred HHHHHH-hCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCc-
Q 003619 509 LFKRAK-VNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDP- 586 (807)
Q Consensus 509 lF~~A~-~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDp- 586 (807)
++.... ...|.+|+|||+|.+... .....+..|+..+ .....+|| ++.....++-
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~------------------~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~ 168 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP------------------EIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIA 168 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh------------------HHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchH
Confidence 233222 257889999999986321 1223444444432 22233444 4433111211
Q ss_pred ccCCCccccEEEecc----CCCHHHHHHHHHHHhhcCCCCCccCHHHHHhhCCCCcHHHHH
Q 003619 587 ALLRPGRFDRKIRIR----APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLA 643 (807)
Q Consensus 587 ALlRpGRFdr~I~I~----lPd~eeR~eILk~~L~~~~l~~dvdL~~LA~~T~GfSgaDL~ 643 (807)
.+.. -+..+.+. ..+.++-.+++...+.. .+ ...++..+.+.|.|+ +.-+.
T Consensus 169 ~l~~---~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gw-p~~l~ 223 (903)
T PRK04841 169 NLRV---RDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGW-ATALQ 223 (903)
T ss_pred hHHh---cCcceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCCh-HHHHH
Confidence 1111 12234444 56888888888765432 22 234477888889885 44444
No 392
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.68 E-value=0.0049 Score=66.41 Aligned_cols=94 Identities=19% Similarity=0.284 Sum_probs=56.6
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEe-CchhHHH
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMA-GSEFVEV 497 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is-~sel~~~ 497 (807)
.+++++.-.++..+.|++++. .....+++.||+|+|||++++++..... ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 456666544444455544421 1223589999999999999999977653 2344442 1121100
Q ss_pred ------HhhhhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 498 ------LVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 498 ------~vG~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
..........+.+..+....|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0011112356677778888999999999964
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.66 E-value=0.0086 Score=61.36 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCCC-ceEEEEcCCCChHHHHHHHHH
Q 003619 455 IKPP-HGVLLEGPPGCGKTLVAKAIA 479 (807)
Q Consensus 455 l~~p-~gVLL~GPPGTGKT~LArALA 479 (807)
+.++ +.++|+||.|+|||+|.+.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444 359999999999999999998
No 394
>PRK00625 shikimate kinase; Provisional
Probab=96.66 E-value=0.0017 Score=65.65 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
+|+|+|.||+|||++++.+|..++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998764
No 395
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.66 E-value=0.0025 Score=75.19 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|.||+|+|||+|++.+++..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 446677789999999999999999999843
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.027 Score=64.63 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCch
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSE 493 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~se 493 (807)
.+.-++|.||+|+|||+++..+|... +..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 35568899999999999999998744 44455555544
No 397
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0046 Score=65.62 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+.+.++..+=|.|++|||||||++++++
T Consensus 28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 28 LEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred EEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 3456677788999999999999999997
No 398
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.0047 Score=65.20 Aligned_cols=70 Identities=30% Similarity=0.436 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--C------CCEEEEeC-chhHHHHhhh-------------hhHHHHHHHHHHHhC
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA--G------VPFYQMAG-SEFVEVLVGV-------------GSARIRDLFKRAKVN 516 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el--g------~pfi~Is~-sel~~~~vG~-------------~~~~ir~lF~~A~~~ 516 (807)
.+.|+.||||||||++.|-+|+-+ + ..+..++- +++.....|. ..-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 368999999999999999999855 2 23344432 2332222221 111223455566789
Q ss_pred CCcEEEeccchh
Q 003619 517 KPSVIFIDEIDA 528 (807)
Q Consensus 517 ~PsILfIDEID~ 528 (807)
.|.|+++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999975
No 399
>PRK04296 thymidine kinase; Provisional
Probab=96.62 E-value=0.0052 Score=62.75 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeC--c--hhHHH---Hhhhh-----hHHHHHHHHHH--HhCCCcEEE
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAG--S--EFVEV---LVGVG-----SARIRDLFKRA--KVNKPSVIF 522 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~--s--el~~~---~vG~~-----~~~ir~lF~~A--~~~~PsILf 522 (807)
-.+++||+|+|||+++..++.++ +..++.+.. . ..... ..|.. .....+++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887765 555555533 1 11000 01110 11223344333 234677999
Q ss_pred eccchhh
Q 003619 523 IDEIDAL 529 (807)
Q Consensus 523 IDEID~L 529 (807)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999754
No 400
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.0066 Score=61.13 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=25.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++.+++..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345667779999999999999999999854
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.60 E-value=0.013 Score=61.99 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchh
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEF 494 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel 494 (807)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 567777765444
No 402
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.60 E-value=0.01 Score=60.22 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 003619 461 VLLEGPPGCGKTLVAKAIA 479 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA 479 (807)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 403
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0061 Score=71.34 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+++++.+-|+|++|+|||+|+..+++.+
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 346677789999999999999999999844
No 404
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.59 E-value=0.016 Score=58.91 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=25.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++++++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677789999999999999999999853
No 405
>PRK13949 shikimate kinase; Provisional
Probab=96.58 E-value=0.002 Score=64.75 Aligned_cols=31 Identities=39% Similarity=0.628 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6899999999999999999999999988755
No 406
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.58 E-value=0.038 Score=57.16 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCE
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPF 486 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pf 486 (807)
+.-+++.|+||+|||++|+.+|.+++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999998765
No 407
>PRK04328 hypothetical protein; Provisional
Probab=96.58 E-value=0.024 Score=60.41 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=29.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEeC
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE---AGVPFYQMAG 491 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e---lg~pfi~Is~ 491 (807)
|++++..+||.||||||||+|+..++.+ .+-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5777888999999999999999877543 3566776665
No 408
>PRK13946 shikimate kinase; Provisional
Probab=96.57 E-value=0.0052 Score=62.22 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
++.|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999988655
No 409
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.57 E-value=0.006 Score=61.84 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
.+|.|+|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998664
No 410
>PRK06217 hypothetical protein; Validated
Probab=96.55 E-value=0.0022 Score=64.75 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
.|+|.|+||+|||+++++|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999977654
No 411
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0025 Score=68.20 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCcc
Q 003619 502 GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRR 581 (807)
Q Consensus 502 ~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~p 581 (807)
+.+..|-++++|....|.+++|||--.= .+...+..+.++|.++.. . +..|+..|+..
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~g------------------vD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL 199 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTG------------------VDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDL 199 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCccc------------------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCc
Confidence 4456778899999999999999995431 122234455666666542 2 45566667765
Q ss_pred CC
Q 003619 582 DL 583 (807)
Q Consensus 582 d~ 583 (807)
..
T Consensus 200 ~~ 201 (254)
T COG1121 200 GL 201 (254)
T ss_pred HH
Confidence 54
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.043 Score=63.28 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCchhHHH----H------hh----------hhhHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEV----L------VG----------VGSARIRDLFK 511 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~sel~~~----~------vG----------~~~~~ir~lF~ 511 (807)
.+|.-++++|++|+|||+++-.+|..+ +..+..+++..+... + .+ ......++.+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999887777643 566777776533221 1 00 11122334555
Q ss_pred HHHhCCCcEEEeccchhh
Q 003619 512 RAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 512 ~A~~~~PsILfIDEID~L 529 (807)
.++....++|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666778998866543
No 413
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.54 E-value=0.0022 Score=61.16 Aligned_cols=30 Identities=37% Similarity=0.804 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMA 490 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is 490 (807)
|.|.|+||||||++|+.||..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988765
No 414
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.54 E-value=0.0021 Score=64.13 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=28.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
|+|.||||+|||++|+.||...+. ..++.++++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 689999999999999999999985 45566665543
No 415
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0074 Score=65.03 Aligned_cols=79 Identities=27% Similarity=0.294 Sum_probs=53.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEEeCch--------hHHH-----------------Hhh--hhh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE--------FVEV-----------------LVG--VGS 503 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~elg~p--fi~Is~se--------l~~~-----------------~vG--~~~ 503 (807)
+.+..+..+-|.|++||||||++|.+.+-.... -+.+++.+ ..+. |.. .+.
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 445667789999999999999999999854211 12222211 1110 111 145
Q ss_pred HHHHHHHHHHHhCCCcEEEeccchhhhh
Q 003619 504 ARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (807)
Q Consensus 504 ~~ir~lF~~A~~~~PsILfIDEID~L~~ 531 (807)
++.|-.+.+|....|.+++.||..+...
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 6677788888889999999999987653
No 416
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.53 E-value=0.014 Score=59.91 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++.+++..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345667789999999999999999999853
No 417
>PRK14532 adenylate kinase; Provisional
Probab=96.53 E-value=0.0022 Score=64.53 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=30.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~ 498 (807)
.++|.||||+|||++++.||+..+.++ ++..+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 589999999999999999999998655 4555655543
No 418
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.0075 Score=62.45 Aligned_cols=29 Identities=41% Similarity=0.659 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.+.++..+.+.||+|||||+|...+|+-
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 45677778999999999999999999983
No 419
>PF13479 AAA_24: AAA domain
Probab=96.53 E-value=0.017 Score=59.97 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=39.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh---HHHH------hhhhhHHHHHHHHHH--HhCCCcEEEeccc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF---VEVL------VGVGSARIRDLFKRA--KVNKPSVIFIDEI 526 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel---~~~~------vG~~~~~ir~lF~~A--~~~~PsILfIDEI 526 (807)
+-.++|||+||+|||++|..+ +.|+ .+++..- ...+ .=.+-..+.+.+..+ ....-.+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346999999999999999888 3332 2322111 1111 001233444555443 2345569999988
Q ss_pred hhhh
Q 003619 527 DALA 530 (807)
Q Consensus 527 D~L~ 530 (807)
+.+.
T Consensus 78 s~~~ 81 (213)
T PF13479_consen 78 SWLE 81 (213)
T ss_pred HHHH
Confidence 8763
No 420
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.51 E-value=0.016 Score=65.34 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+...+|+||||||||+|++.+++..
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998866
No 421
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.51 E-value=0.0042 Score=70.11 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=46.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEeCc-hhH-----------HHHhhhhhHHHHHHHHHHHhCCCcEE
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMAGS-EFV-----------EVLVGVGSARIRDLFKRAKVNKPSVI 521 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is~s-el~-----------~~~vG~~~~~ir~lF~~A~~~~PsIL 521 (807)
..+|++||+|+|||++++++.+.. +..++.+.-. ++. ..-+|.........+..+....|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 368999999999999999998765 2334444221 211 11122222245567777888899999
Q ss_pred Eeccchh
Q 003619 522 FIDEIDA 528 (807)
Q Consensus 522 fIDEID~ 528 (807)
+++|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999864
No 422
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.51 E-value=0.015 Score=59.21 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=26.0
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|.+.+++..
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345667789999999999999999999875
No 423
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.016 Score=59.45 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++++++..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345666779999999999999999999853
No 424
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.50 E-value=0.034 Score=61.59 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
..+.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456778999999999999999998865 4455555543
No 425
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.48 E-value=0.0032 Score=70.09 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=48.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEe-CchhHH-----------HH--hhhhhHHHHHHHHHHHhCCCc
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMA-GSEFVE-----------VL--VGVGSARIRDLFKRAKVNKPS 519 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is-~sel~~-----------~~--vG~~~~~ir~lF~~A~~~~Ps 519 (807)
+..++++++|++|+|||++++++..... ..++.+. ..++.- .. .+...-...+++..+....|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3456899999999999999999998663 2233221 111110 00 111223467788888999999
Q ss_pred EEEeccchh
Q 003619 520 VIFIDEIDA 528 (807)
Q Consensus 520 ILfIDEID~ 528 (807)
.|++.|+-.
T Consensus 238 ~IivGEiR~ 246 (332)
T PRK13900 238 RIIVGELRG 246 (332)
T ss_pred eEEEEecCC
Confidence 999999863
No 426
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0085 Score=61.35 Aligned_cols=30 Identities=37% Similarity=0.573 Sum_probs=25.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++.+++..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 22 FTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345666779999999999999999999853
No 427
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.0035 Score=69.81 Aligned_cols=26 Identities=46% Similarity=0.805 Sum_probs=22.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
+..+.-+.|.||+||||||+.|.||+
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34455689999999999999999998
No 428
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.45 E-value=0.011 Score=58.09 Aligned_cols=36 Identities=31% Similarity=0.629 Sum_probs=29.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777777655543
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0034 Score=62.95 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=47.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--EEEEeCch-----------------------hH------HHHh--h
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVP--FYQMAGSE-----------------------FV------EVLV--G 500 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~p--fi~Is~se-----------------------l~------~~~v--G 500 (807)
.+.++..+.|.||+|+|||+|++++++..... -+.+++.+ +. +... -
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 35566678999999999999999999754210 01111100 00 0000 1
Q ss_pred hhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 501 VGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 501 ~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
.+..+.+-.+..|....|.++++||-..
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 1234556677788888999999999765
No 430
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.42 E-value=0.023 Score=58.60 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=41.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhH-------HHH---hhh----------hhHHHHHHHHHHH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFV-------EVL---VGV----------GSARIRDLFKRAK 514 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~-------~~~---vG~----------~~~~ir~lF~~A~ 514 (807)
|+-++|+||+|+|||+.+-.+|..+ +..+--+++..+. ..| .+. .....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5678999999999999888887754 4444444433221 111 110 1123445566666
Q ss_pred hCCCcEEEeccchh
Q 003619 515 VNKPSVIFIDEIDA 528 (807)
Q Consensus 515 ~~~PsILfIDEID~ 528 (807)
...-++|+||=...
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 66667999987543
No 431
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.41 E-value=0.18 Score=55.68 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=63.3
Q ss_pred CCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCC-CCceEE--EeccCc---cC--CCCccc
Q 003619 517 KPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDT-GKGVIF--LAATNR---RD--LLDPAL 588 (807)
Q Consensus 517 ~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~-~~~VIV--IAATN~---pd--~LDpAL 588 (807)
.|.++-||++..+..... ..+.. ..............|+..+.+-.. ..+.+| +++|.. +. .++.++
T Consensus 156 ~PVL~avD~~n~l~~~S~--Y~~~~---~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L 230 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSA--YRDPD---FKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVAL 230 (309)
T ss_pred CceEEEehhhHHhhCCcc--ccCCC---CccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhh
Confidence 466788999999987621 11111 111223333444455444333222 233333 555543 22 345555
Q ss_pred CCCc------ccc-------------EEEeccCCCHHHHHHHHHHHhhcCCCCCcc----CHHHHHhhCCCCcHHHHHH
Q 003619 589 LRPG------RFD-------------RKIRIRAPNAKGRTEILKIHASKVKMSDSV----DLSSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 589 lRpG------RFd-------------r~I~I~lPd~eeR~eILk~~L~~~~l~~dv----dL~~LA~~T~GfSgaDL~~ 644 (807)
.... -|. ..|+++..+.+|-..+++.+....-+.... -.+.+.-.+ |.+++++..
T Consensus 231 ~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s-~GNp~el~k 308 (309)
T PF10236_consen 231 GGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSS-NGNPRELEK 308 (309)
T ss_pred ccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhc-CCCHHHhcc
Confidence 4311 111 267888999999999999888764443211 133334333 447777754
No 432
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.0029 Score=79.40 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.++++..+.|.||+||||||+.+.+++-
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rf 402 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARF 402 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567778999999999999999999983
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.41 E-value=0.0035 Score=68.77 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=48.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEeC-chhHH---HH---------hhhhhHHHHHHHHHHHhCCCc
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAG-SEFVE---VL---------VGVGSARIRDLFKRAKVNKPS 519 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg--~pfi~Is~-sel~~---~~---------vG~~~~~ir~lF~~A~~~~Ps 519 (807)
++...++++.||+|+|||++++++++... ...+.+.- .++.- .. .+...-.+.+++..+....|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 45667999999999999999999998662 12222211 11100 00 011123456778888889999
Q ss_pred EEEeccchh
Q 003619 520 VIFIDEIDA 528 (807)
Q Consensus 520 ILfIDEID~ 528 (807)
+|++||+-.
T Consensus 221 ~ii~gE~r~ 229 (308)
T TIGR02788 221 RIILGELRG 229 (308)
T ss_pred eEEEeccCC
Confidence 999999863
No 434
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.41 E-value=0.019 Score=62.41 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEeCch
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA----G-VPFYQMAGSE 493 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el----g-~pfi~Is~se 493 (807)
..++.++|+||+|+|||+++..+|..+ + ..+..+++..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346679999999999999999998754 3 5666666654
No 435
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.40 E-value=0.012 Score=60.32 Aligned_cols=29 Identities=41% Similarity=0.586 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.+.++..+.|.||+|+|||+|++.+++.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567778999999999999999999986
No 436
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.40 E-value=0.0028 Score=61.29 Aligned_cols=32 Identities=38% Similarity=0.748 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
++|+|+||+|||++|+.++...+.+++ +...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~ 33 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL 33 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence 689999999999999999999887655 44444
No 437
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.016 Score=59.64 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++.-+.+.||.|+|||+|.|.+|+-+
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 5566779999999999999999999844
No 438
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.40 E-value=0.022 Score=57.55 Aligned_cols=71 Identities=23% Similarity=0.300 Sum_probs=46.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhh-----------------hhhHHHHHHHHHHHhCCCcEEEe
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVG-----------------VGSARIRDLFKRAKVNKPSVIFI 523 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG-----------------~~~~~ir~lF~~A~~~~PsILfI 523 (807)
+|+.|++|+|||++|..++...+.+.+++....-.+.-.. +....+.+.+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887778887764432211000 1112233333221 25679999
Q ss_pred ccchhhhhhh
Q 003619 524 DEIDALATRR 533 (807)
Q Consensus 524 DEID~L~~~r 533 (807)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887654
No 439
>PRK13764 ATPase; Provisional
Probab=96.40 E-value=0.0037 Score=74.41 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=42.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEe-CchhH-----HHHhhhhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMA-GSEFV-----EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is-~sel~-----~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
.+++|++||||+||||++++++..+. ..+..+. ..++. ..+.. ...........+....|+++++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 46899999999999999999998763 2232331 11211 11100 001122233334567899999999754
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.39 E-value=0.026 Score=65.89 Aligned_cols=78 Identities=26% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHHHHhhh----------------------------h
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVEVLVGV----------------------------G 502 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~~~vG~----------------------------~ 502 (807)
|+.++..+||.||||+|||+|+-.++.+. +-+.++++..+-.+.+... .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 57777889999999999999999997754 6677777764433221110 0
Q ss_pred hHHHHHHHHHHHhCCCcEEEeccchhhhh
Q 003619 503 SARIRDLFKRAKVNKPSVIFIDEIDALAT 531 (807)
Q Consensus 503 ~~~ir~lF~~A~~~~PsILfIDEID~L~~ 531 (807)
...+..+.+......|.+|+||-+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23345555666677899999999998753
No 441
>PRK06696 uridine kinase; Validated
Probab=96.37 E-value=0.0053 Score=64.00 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=33.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCchhHH
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSEFVE 496 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~sel~~ 496 (807)
.+.-|.|.|++|+||||+|+.|+..+ +.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45678899999999999999999988 77888888777653
No 442
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.37 E-value=0.0026 Score=62.48 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchh
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEF 494 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel 494 (807)
++|+||+|+|||++++.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987664 44443
No 443
>PRK14531 adenylate kinase; Provisional
Probab=96.37 E-value=0.0035 Score=63.35 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
.|+++||||+|||++++.+|...+.+.+ ++.+++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 5899999999999999999999987765 4555543
No 444
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.36 E-value=0.0031 Score=63.29 Aligned_cols=35 Identities=34% Similarity=0.661 Sum_probs=28.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 461 VLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 461 VLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
|+|.||||+|||++++.||...+.+++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999886654 45555543
No 445
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.015 Score=63.80 Aligned_cols=27 Identities=44% Similarity=0.651 Sum_probs=23.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
.++.+.-+-|.||+|+|||+|.|.||+
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 345566789999999999999999998
No 446
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.34 E-value=0.012 Score=64.72 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I 489 (807)
+.++..|.|+|++|||||++++.+|..+|.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 46677899999999999999999999999999943
No 447
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.33 E-value=0.018 Score=63.33 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=31.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~se 493 (807)
|++.+.-++|+||||+|||+++..+|..+ +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56777789999999999999999998653 23677777644
No 448
>PRK14530 adenylate kinase; Provisional
Probab=96.33 E-value=0.0036 Score=64.76 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
.|+|.||||+|||++++.||+..+.+++. ..+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHH
Confidence 68999999999999999999999877664 344443
No 449
>PHA02624 large T antigen; Provisional
Probab=96.33 E-value=0.0063 Score=72.04 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=33.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
|++..+.++|+||||||||+++.+|++.++...+.++++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 4555668999999999999999999999976677787654
No 450
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.33 E-value=0.0041 Score=65.70 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVE 496 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~ 496 (807)
..|..++|.||||+|||++|+.+|+..+++++.+ .+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 3445699999999999999999999999876654 45443
No 451
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.33 E-value=0.014 Score=71.24 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=49.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEeCchhHH-HH---hhh------------hhHHHHHHHHHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAG---EAGVPFYQMAGSEFVE-VL---VGV------------GSARIRDLFKRAK 514 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~---elg~pfi~Is~sel~~-~~---vG~------------~~~~ir~lF~~A~ 514 (807)
|+..+..++|+||||||||+|+..++. ..+...++++..+-.. .. .|. .+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 567777899999999999999976544 3366777776544222 10 010 1121222222234
Q ss_pred hCCCcEEEeccchhhhh
Q 003619 515 VNKPSVIFIDEIDALAT 531 (807)
Q Consensus 515 ~~~PsILfIDEID~L~~ 531 (807)
...+.+|+||-+..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 46789999999999885
No 452
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0054 Score=62.39 Aligned_cols=34 Identities=29% Similarity=0.607 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
.|+|.||||+||||+|+.||+.+ ++.+++-.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 58999999999999999999994 45555544443
No 453
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.32 E-value=0.023 Score=62.19 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~se 493 (807)
|+..+.-++|+||||+|||+++-.+|..+ +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667778999999999999999998663 23678887654
No 454
>PLN02200 adenylate kinase family protein
Probab=96.32 E-value=0.0052 Score=65.07 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
+.+.|..++|.||||+|||++|+.+|...+.+ .+++++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34566779999999999999999999999865 5677776653
No 455
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.31 E-value=0.014 Score=73.69 Aligned_cols=178 Identities=19% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCCceEEEEcCCCChHHHHH-HHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCC-----------C----
Q 003619 455 IKPPHGVLLEGPPGCGKTLVA-KAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNK-----------P---- 518 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LA-rALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~-----------P---- 518 (807)
+..-++++++||||+|||+|. -++-.+....++++|-+.-. ....+-..+++-...- |
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t------~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT------MTPSKLSVLERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc------CCHHHHHHHHhhceeeccCCeEEEccCcchhh
Confidence 445679999999999999964 47777788888888764311 1111112222221111 1
Q ss_pred cEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCC--------CCCceEEEeccCccCCCC-----
Q 003619 519 SVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFD--------TGKGVIFLAATNRRDLLD----- 585 (807)
Q Consensus 519 sILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~--------~~~~VIVIAATN~pd~LD----- 585 (807)
-|||.|||. +...+. ..+.+. --.+.+| .+-+|+- +-.++++.+++|.+....
T Consensus 1565 lVLFcDeIn-Lp~~~~---y~~~~v---------I~FlR~l-~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFE---YYPPTV---------IVFLRPL-VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred eEEEeeccC-Cccccc---cCCCce---------EEeeHHH-HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 289999998 332211 000000 0001122 2223332 235689999999876532
Q ss_pred cccCCCccccEEEeccCCCHHHHHHHHHHHhhcCCCCC-c------------cCH--------HHHHhhCCCCcHHHHHH
Q 003619 586 PALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSD-S------------VDL--------SSYAKNLPGWTGARLAQ 644 (807)
Q Consensus 586 pALlRpGRFdr~I~I~lPd~eeR~eILk~~L~~~~l~~-d------------vdL--------~~LA~~T~GfSgaDL~~ 644 (807)
..++| =...+++..|.......|.+.++.+.-+.- + +.+ ....+..-||+|+||-.
T Consensus 1631 eRf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR 1707 (3164)
T COG5245 1631 ERFIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTR 1707 (3164)
T ss_pred HHHhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHH
Confidence 23332 124678889999888888887765432211 1 110 01111224799999999
Q ss_pred HHHHHHHHHHH
Q 003619 645 LVQEAALVAVR 655 (807)
Q Consensus 645 Lv~eAal~A~r 655 (807)
.++-....|..
T Consensus 1708 ~lr~i~~yaeT 1718 (3164)
T COG5245 1708 SLRAIFGYAET 1718 (3164)
T ss_pred HHHHHHhHHhc
Confidence 98876665543
No 456
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.014 Score=59.88 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=25.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
.+.++..+.|.||+|+|||+|++.+++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 45667789999999999999999999864
No 457
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.29 E-value=0.0042 Score=61.55 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~I 489 (807)
..++|+|++|+|||++++.+|+.++.+++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3689999999999999999999999998754
No 458
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.0092 Score=66.57 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el 482 (807)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 459
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.28 E-value=0.017 Score=62.45 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=59.7
Q ss_pred cccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHH
Q 003619 426 DVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSAR 505 (807)
Q Consensus 426 dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ 505 (807)
+++=.+++.+.+.++.+-+..| ..+.||.|.+|+||+++++..|.-++..++.+..+.-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~----------~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQP----------RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCST----------TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCC----------CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 5677788888888887777654 357999999999999999999999999999887654222 2223345
Q ss_pred HHHHHHHHH-hCCCcEEEeccc
Q 003619 506 IRDLFKRAK-VNKPSVIFIDEI 526 (807)
Q Consensus 506 ir~lF~~A~-~~~PsILfIDEI 526 (807)
++.++..|- ++.|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666664 456878888764
No 460
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.28 E-value=0.0098 Score=61.43 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=25.3
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.+.++..+.|.||+|+|||+|++.+++.
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44567778999999999999999999984
No 461
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.27 E-value=0.043 Score=58.63 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeCchh---HHHH-----hhh---------hhHHHHHHHHHHH--
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSEF---VEVL-----VGV---------GSARIRDLFKRAK-- 514 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~sel---~~~~-----vG~---------~~~~ir~lF~~A~-- 514 (807)
+.|-.+++.|++|||||+++..+.....- ..+.+-++.. ...+ +.. ...+......+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 44567999999999999999999776532 2222211111 1111 000 0011111111211
Q ss_pred --h---CCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCccCCCCcccC
Q 003619 515 --V---NKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALL 589 (807)
Q Consensus 515 --~---~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~pd~LDpALl 589 (807)
. ..+++|+|||+.. . ......+.+++.. ...-++-+|..+.....+|+.++
T Consensus 91 ~~~~k~~~~~LiIlDD~~~---~-----------------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR 146 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGD---K-----------------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIR 146 (241)
T ss_pred hcccCCCCCeEEEEeCCCC---c-----------------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHh
Confidence 1 2367999999742 1 0112344555542 22335777777888888999987
Q ss_pred CCccccEEEeccCCCHHHHHHHHHHH
Q 003619 590 RPGRFDRKIRIRAPNAKGRTEILKIH 615 (807)
Q Consensus 590 RpGRFdr~I~I~lPd~eeR~eILk~~ 615 (807)
. -.+..+-++ -+..+..-|++.+
T Consensus 147 ~--n~~y~i~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 147 S--NIDYFIIFN-NSKRDLENIYRNM 169 (241)
T ss_pred h--cceEEEEec-CcHHHHHHHHHhc
Confidence 6 566666554 4555555555544
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.27 E-value=0.0041 Score=69.52 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=47.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEeC-chhHH------------HHhhhhhHHHHHHHHHHHhCCCcE
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAG-SEFVE------------VLVGVGSARIRDLFKRAKVNKPSV 520 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~--pfi~Is~-sel~~------------~~vG~~~~~ir~lF~~A~~~~PsI 520 (807)
+..+++|+.||+|+|||++++++++.... .++.+.- .++.- ...+...-...+++..+....|+.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 45668999999999999999999986532 2332211 11110 001112234667888888899999
Q ss_pred EEeccch
Q 003619 521 IFIDEID 527 (807)
Q Consensus 521 LfIDEID 527 (807)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999975
No 463
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.27 E-value=0.0083 Score=65.52 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC----CCEEEEe---------CchhH-HHHhhhhhHHHHHHHHHHHhCCCcEEEecc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAG----VPFYQMA---------GSEFV-EVLVGVGSARIRDLFKRAKVNKPSVIFIDE 525 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg----~pfi~Is---------~sel~-~~~vG~~~~~ir~lF~~A~~~~PsILfIDE 525 (807)
-||++||+|+|||+..-++-...+ .+.+.+. -..++ ..-+|.........++.|....|+||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 478889999999998888877653 3333332 11222 223455555566777788889999999998
Q ss_pred chh
Q 003619 526 IDA 528 (807)
Q Consensus 526 ID~ 528 (807)
+-.
T Consensus 207 mRD 209 (353)
T COG2805 207 MRD 209 (353)
T ss_pred ccc
Confidence 754
No 464
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.26 E-value=0.023 Score=58.95 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
..++-++|.||+|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999974
No 465
>PRK06547 hypothetical protein; Provisional
Probab=96.26 E-value=0.0043 Score=62.68 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQM 489 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~I 489 (807)
..+.-|++.|++|+|||++++.+++..+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4456788999999999999999999998887754
No 466
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.26 E-value=0.0051 Score=61.84 Aligned_cols=34 Identities=26% Similarity=0.606 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeC
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAG 491 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~ 491 (807)
...|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4479999999999999999999999999887653
No 467
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.25 E-value=0.018 Score=63.59 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~se 493 (807)
|+..+.-+.|+||||+|||.|+..+|-.. +...++++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 56777778999999999999999887422 34677776543
No 468
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.24 E-value=0.01 Score=61.46 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 434 VEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 434 keeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+..|...+....+| |.+...-++|.|+-|+|||++.+.|+.+
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 34444444444444 4555667889999999999999999666
No 469
>PTZ00035 Rad51 protein; Provisional
Probab=96.24 E-value=0.025 Score=63.15 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg---------~pfi~Is~s 492 (807)
|+..+.-+.|+||||+|||+|+..++.... ...++++..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE 161 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTE 161 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEcc
Confidence 567777789999999999999999975433 345666653
No 470
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.23 E-value=0.0081 Score=61.86 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++.+++..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 345566779999999999999999999853
No 471
>PRK13695 putative NTPase; Provisional
Probab=96.21 E-value=0.031 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el 482 (807)
.++|.|++|+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988764
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.19 E-value=0.045 Score=63.88 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE----AGVPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e----lg~pfi~Is~se 493 (807)
|+.++..+||.||||||||+||..++.+ .+-+.++++..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 6778889999999999999999988543 267887777543
No 473
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.023 Score=60.57 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++....|+||.|+|||+|++.++++.
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 456777789999999999999999998743
No 474
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.17 E-value=0.0065 Score=67.39 Aligned_cols=70 Identities=21% Similarity=0.326 Sum_probs=47.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe-CchhHHH------HhhhhhHHHHHHHHHHHhCCCcEEEecc
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFVEV------LVGVGSARIRDLFKRAKVNKPSVIFIDE 525 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is-~sel~~~------~vG~~~~~ir~lF~~A~~~~PsILfIDE 525 (807)
.+++|++|++|+|||+++++++... +..++.+. ..++.-. +.....-...+++..+....|+.|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4589999999999999999999865 22333332 1222100 0111122466788888889999999999
Q ss_pred ch
Q 003619 526 ID 527 (807)
Q Consensus 526 ID 527 (807)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 475
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.17 E-value=0.024 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAG 480 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~ 480 (807)
.++..+|+||.|+|||++.++++-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999853
No 476
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0032 Score=70.58 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=24.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
.+.++.-+.|.||+|+|||+|.+.||+.
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3456667889999999999999999984
No 477
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.15 E-value=0.014 Score=64.70 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=32.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHH
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEV 497 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~ 497 (807)
+.+.|.|+||+|||+|++++++..+.+++.-.+.++...
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~ 201 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEE 201 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHH
Confidence 479999999999999999999999999877666555443
No 478
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.15 E-value=0.015 Score=58.00 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeCchhH
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAGSEFV 495 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~sel~ 495 (807)
..|.-++|.|+||+|||++++++++.+. ...+.++...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 4566899999999999999999999875 335566654443
No 479
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.15 E-value=0.0035 Score=70.83 Aligned_cols=29 Identities=45% Similarity=0.660 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.+..+.-+.|.||+|+|||+|.++||+.
T Consensus 35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 35 LTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34556667999999999999999999984
No 480
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.14 E-value=0.055 Score=52.54 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHhcC----CCEEEEeC
Q 003619 459 HGVLLEGPPGCGKTL-VAKAIAGEAG----VPFYQMAG 491 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~-LArALA~elg----~pfi~Is~ 491 (807)
+.+++.||+|+|||. ++..+..... ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 478999999999999 5555554432 34555544
No 481
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.14 E-value=0.031 Score=57.06 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=25.4
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++..+.|.||+|+|||+|++.+++..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345667789999999999999999999854
No 482
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.14 E-value=0.054 Score=53.80 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCch
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGSE 493 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~se 493 (807)
-+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 36899999999999999998765 66677777653
No 483
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.14 E-value=0.0066 Score=67.24 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=47.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe-CchhH---HH---HhhhhhHHHHHHHHHHHhCCCcEEEec
Q 003619 457 PPHGVLLEGPPGCGKTLVAKAIAGEA-----GVPFYQMA-GSEFV---EV---LVGVGSARIRDLFKRAKVNKPSVIFID 524 (807)
Q Consensus 457 ~p~gVLL~GPPGTGKT~LArALA~el-----g~pfi~Is-~sel~---~~---~vG~~~~~ir~lF~~A~~~~PsILfID 524 (807)
..++++++|++|+|||++++++++.. ...++.+. ..++. .. +.....-.+.+++..+....|+.|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34589999999999999999999863 12233221 11211 00 001112346788888889999999999
Q ss_pred cchh
Q 003619 525 EIDA 528 (807)
Q Consensus 525 EID~ 528 (807)
|+-.
T Consensus 227 EiR~ 230 (319)
T PRK13894 227 EVRG 230 (319)
T ss_pred ccCC
Confidence 9853
No 484
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.11 E-value=0.15 Score=55.43 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc
Q 003619 456 KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS 492 (807)
Q Consensus 456 ~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s 492 (807)
..++-++++||+|+|||+++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456778899999999999999998755 5556556554
No 485
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.10 E-value=0.013 Score=74.55 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=88.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH--HHHhhh----hhH---HHHHHHHHHHhCCCcEEEeccchhh
Q 003619 459 HGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV--EVLVGV----GSA---RIRDLFKRAKVNKPSVIFIDEIDAL 529 (807)
Q Consensus 459 ~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~--~~~vG~----~~~---~ir~lF~~A~~~~PsILfIDEID~L 529 (807)
.++||.||+.+|||+....+|++.|-.|+.+|-.+-. ..|.|. ... --..++-.|.++ ...|+|||+.-.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC
Confidence 3699999999999999999999999999999875432 223432 111 112233344333 348999999763
Q ss_pred hhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCC---------CCCCceEEEeccCccCC------CCcccCCCccc
Q 003619 530 ATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGF---------DTGKGVIFLAATNRRDL------LDPALLRPGRF 594 (807)
Q Consensus 530 ~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~---------~~~~~VIVIAATN~pd~------LDpALlRpGRF 594 (807)
.. .....+|.||..-..+ .+..++.+.||-|.|-. |..|++. ||
T Consensus 968 pT-------------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF 1026 (4600)
T COG5271 968 PT-------------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF 1026 (4600)
T ss_pred cH-------------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh
Confidence 32 2345677777653322 23456778888887653 6667776 77
Q ss_pred cEEEeccCCCHHHHHHHHHHHh
Q 003619 595 DRKIRIRAPNAKGRTEILKIHA 616 (807)
Q Consensus 595 dr~I~I~lPd~eeR~eILk~~L 616 (807)
- .++|.--..++...||....
T Consensus 1027 l-E~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1027 L-EMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred H-hhhcccCcHHHHHHHHhccC
Confidence 4 56666666777777776443
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.09 E-value=0.0055 Score=61.03 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
-+++.||||+|||++++.++..++.+. ++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 578999999999999999999987654 4444443
No 487
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.014 Score=60.94 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~el 482 (807)
-++|+|+||+|||++|+-+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 37899999999999999999987
No 488
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.08 E-value=0.021 Score=63.97 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEeCc
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA---------GVPFYQMAGS 492 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el---------g~pfi~Is~s 492 (807)
|+..+.-..|+||||||||.|+..+|-.. +..+++++..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 56777778899999999999999887433 2456777653
No 489
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.07 E-value=0.02 Score=63.32 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEeCch
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---------VPFYQMAGSE 493 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~elg---------~pfi~Is~se 493 (807)
|+.+..-+.|+||||+|||+|+..++..+. ...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 567777789999999999999999886332 2567776644
No 490
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.035 Score=58.22 Aligned_cols=127 Identities=25% Similarity=0.278 Sum_probs=73.4
Q ss_pred hcChhhhhhcCC--CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEeCc----hhHHH-----------------
Q 003619 444 LKNPELFDKMGI--KPPHGVLLEGPPGCGKTLVAKAIAGEA---GVPFYQMAGS----EFVEV----------------- 497 (807)
Q Consensus 444 L~~pe~~~~lGl--~~p~gVLL~GPPGTGKT~LArALA~el---g~pfi~Is~s----el~~~----------------- 497 (807)
..+.++-+++|. +.+.-+++.|+.|||||.|.+.++--. +....+++.. +|...
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 345555666754 445558889999999999999997522 3333333221 11110
Q ss_pred -----------H-hhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcC
Q 003619 498 -----------L-VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDG 565 (807)
Q Consensus 498 -----------~-vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg 565 (807)
| .......+..+.+.-+...-.|++||-++.+.... ....+++++..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------------------~~~~vl~fm~~~r~ 153 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------------------SEDAVLNFMTFLRK 153 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------------------cHHHHHHHHHHHHH
Confidence 0 11122334445555556667899999999876442 12234555555555
Q ss_pred CCCCCceEEEeccCccCCCCcccCC
Q 003619 566 FDTGKGVIFLAATNRRDLLDPALLR 590 (807)
Q Consensus 566 ~~~~~~VIVIAATN~pd~LDpALlR 590 (807)
+...+.++++ |-+|..++++.+.
T Consensus 154 l~d~gKvIil--Tvhp~~l~e~~~~ 176 (235)
T COG2874 154 LSDLGKVIIL--TVHPSALDEDVLT 176 (235)
T ss_pred HHhCCCEEEE--EeChhhcCHHHHH
Confidence 5445555554 4457888887765
No 491
>PTZ00202 tuzin; Provisional
Probab=96.07 E-value=0.053 Score=62.46 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=50.3
Q ss_pred cccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCch
Q 003619 422 VKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 422 v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~se 493 (807)
....+.+|.+....+|.+++... ....+.-+.|+||+|||||+|++.+.+.++.+.+.++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 44578999999999998887542 2234457889999999999999999999998877777653
No 492
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.06 E-value=0.0085 Score=62.74 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=61.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhHHHHhhhhhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccC
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKD 539 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~~~~vG~~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~ 539 (807)
-++|+||+|||||.+|-++|+..+.|++..+.-.......-.+.+... +....-.=++|||-..--+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~-----~el~~~~RiyL~~r~l~~G-------- 69 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP-----SELKGTRRIYLDDRPLSDG-------- 69 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S-----GGGTT-EEEES----GGG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH-----HHHcccceeeeccccccCC--------
Confidence 368999999999999999999999999998865544332211222111 1111111388886443111
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceEEEeccCc-cCCC--CcccCCCccccE-EEeccCCCHHHHHHHHHHH
Q 003619 540 TTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNR-RDLL--DPALLRPGRFDR-KIRIRAPNAKGRTEILKIH 615 (807)
Q Consensus 540 ~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VIVIAATN~-pd~L--DpALlRpGRFdr-~I~I~lPd~eeR~eILk~~ 615 (807)
.-........|+..++.....+.+|+=+-+.. ...+ ++-... .|.. ...++.|+.+.-..-.+..
T Consensus 70 ---------~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 70 ---------IINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp ---------S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHH
T ss_pred ---------CcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHH
Confidence 01122334556666676666555555444322 1111 112212 2332 4466788887766655555
Q ss_pred hhcC
Q 003619 616 ASKV 619 (807)
Q Consensus 616 L~~~ 619 (807)
.+++
T Consensus 139 v~~M 142 (233)
T PF01745_consen 139 VRQM 142 (233)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 493
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0078 Score=67.44 Aligned_cols=30 Identities=47% Similarity=0.703 Sum_probs=25.2
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.+.++.-+.|.||+|+|||+|.+.||+..
T Consensus 27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 345666779999999999999999999843
No 494
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.04 E-value=0.067 Score=62.69 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEeCchhHHHHhhh----------------------------
Q 003619 454 GIKPPHGVLLEGPPGCGKTLVAKAIAGEA----GVPFYQMAGSEFVEVLVGV---------------------------- 501 (807)
Q Consensus 454 Gl~~p~gVLL~GPPGTGKT~LArALA~el----g~pfi~Is~sel~~~~vG~---------------------------- 501 (807)
|++++..+||.|+||+|||+|+..++.+. +-+.++++..+-.+.+...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred --------hhHHHHHHHHHHHhCCCcEEEeccchhhhhhhcCcccCcchhhhhhhhHHHHHHHHHHHHhhcCCCCCCceE
Q 003619 502 --------GSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 502 --------~~~~ir~lF~~A~~~~PsILfIDEID~L~~~r~~~~~~~~d~~~~~~~~e~~~tLn~LL~eLdg~~~~~~VI 573 (807)
-...+..+........|..++||-+..+...-. ........+..++..+. ..++.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d-------------~~~~~r~~l~~L~~~Lk----~~g~T 169 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFS-------------NEAVVRRELRRLFAWLK----QKGVT 169 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhcc-------------CHHHHHHHHHHHHHHHH----hCCCE
Q ss_pred EEeccCccCCCCc
Q 003619 574 FLAATNRRDLLDP 586 (807)
Q Consensus 574 VIAATN~pd~LDp 586 (807)
+|.+++.....++
T Consensus 170 vLlt~~~~~~~~~ 182 (509)
T PRK09302 170 AVITGERGDEYGP 182 (509)
T ss_pred EEEEECCccCcCC
No 495
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.02 E-value=0.016 Score=66.12 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 458 PHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 458 p~gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
.+.|.|.|++|||||+|+++||+..+.+.+.--+.+..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 34799999999999999999999998887655444444
No 496
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.015 Score=65.78 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=24.7
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGE 481 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~e 481 (807)
+.+.++.-+.|.||+|+|||+|.+.||+.
T Consensus 40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 40 LTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34556677899999999999999999974
No 497
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.01 E-value=0.017 Score=67.44 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred CCcccCcccccHHHHHHHHHHHHHhcChhhhhhcCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEeC-chhH
Q 003619 420 TGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAG---VPFYQMAG-SEFV 495 (807)
Q Consensus 420 ~~v~F~dVvG~devkeeL~eiV~~L~~pe~~~~lGl~~p~gVLL~GPPGTGKT~LArALA~elg---~pfi~Is~-sel~ 495 (807)
...+++++.-.++..+.+++++. .+..-++++||+|+|||+++.++.++.. ..++.+.- -++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~-------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR-------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 34577777655666666665432 1222478999999999999998877663 33444422 1111
Q ss_pred HHH-----hh-hhhHHHHHHHHHHHhCCCcEEEeccchh
Q 003619 496 EVL-----VG-VGSARIRDLFKRAKVNKPSVIFIDEIDA 528 (807)
Q Consensus 496 ~~~-----vG-~~~~~ir~lF~~A~~~~PsILfIDEID~ 528 (807)
-.. +. .........+..+....|++|++.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 000 00 0112344566667778999999999864
No 498
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.00 E-value=0.0042 Score=73.11 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.9
Q ss_pred cCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 453 MGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 453 lGl~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
+.++++..+.|.||+|+|||+|++.+++..
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 373 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLY 373 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 446777889999999999999999999843
No 499
>PRK14528 adenylate kinase; Provisional
Probab=95.99 E-value=0.0066 Score=61.72 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEeCchhH
Q 003619 460 GVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 460 gVLL~GPPGTGKT~LArALA~elg~pfi~Is~sel~ 495 (807)
.+++.||||+|||++++.+|...+.+.+. ..+++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999987654 44443
No 500
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.98 E-value=0.024 Score=62.03 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 003619 455 IKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 455 l~~p~gVLL~GPPGTGKT~LArALA~el 482 (807)
++++.-+.|.||+|+|||||.+.+++..
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4455568999999999999999999844
Done!