Query 003619
Match_columns 807
No_of_seqs 418 out of 3830
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 18:55:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003619.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1666-1670//hhsearch_pdb/003619hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 1.0 1 1 546.1 35.1 366 419-802 10-376 (476)
2 2dhr_A FTSH; AAA+ protein, hex 1.0 1 1 524.1 32.8 380 403-802 10-389 (499)
3 4b4t_J 26S protease regulatory 1.0 1 1 424.7 24.9 256 414-677 137-393 (405)
4 4b4t_I 26S protease regulatory 1.0 1 1 416.4 25.5 256 415-678 172-428 (437)
5 4b4t_H 26S protease regulatory 1.0 1 1 415.3 24.5 257 415-679 199-456 (467)
6 4b4t_M 26S protease regulatory 1.0 1 1 412.1 26.5 255 415-677 171-426 (434)
7 4b4t_L 26S protease subunit RP 1.0 1 1 411.3 26.7 254 415-676 171-425 (437)
8 4b4t_K 26S protease regulatory 1.0 1 1 404.2 25.3 253 415-675 162-416 (428)
9 3cf2_A TER ATPase, transitiona 1.0 1 1 391.2 8.4 235 415-657 467-702 (806)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 370.8 19.3 250 417-677 196-463 (806)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=1.00 E-value=1 Score=546.10 Aligned_cols=366 Identities=46% Similarity=0.804 Sum_probs=340.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 98854574336389999999999991490233102998995399985999849999999999419988998171257898
Q 003619 419 STGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVL 498 (807)
Q Consensus 419 ~~~v~F~dIvG~devkeeL~eiI~~L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~sel~~~~ 498 (807)
.+.++|+||+|++++++++++++.++.++..|..+|.++|+|+||+||||||||++|+++|++++.||+.++++++.+.+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHH
T ss_conf 89999888188499999999999984072877643788897389988999888999999999819986607899999997
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 53214799999999882899379963300565310276567510110131489999999999852198899815898315
Q 003619 499 VGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAAT 578 (807)
Q Consensus 499 vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VIVIaAT 578 (807)
+|.+..+++.+|..|+...||||||||+|.++.+++....+ ...+...++++|+.+||++..+.+++||++|
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g--------~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG--------GHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 34108899999999984599789985666542100466676--------7688999999999997533788888999956
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 86687893457886333788136899889999999986028888743778898619999699999999999999888199
Q 003619 579 NRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVRKGH 658 (807)
Q Consensus 579 N~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~Airr~~ 658 (807)
|+++.+|++++|||||++.|.+++|+.++|.+|++.++++.++..++++..++..++|++|+||+++|++|++.|.+++.
T Consensus 162 n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~ 241 (476)
T 2ce7_A 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR 241 (476)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHCHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 87566363312267530686158999899999999999727886055499998755798399999999999999997489
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCCCEEEEECC
Q ss_conf 86479889999978716986557323567613689999999999998420323334332016762078-65740577316
Q 003619 659 ESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRG-QTLSQLVFHRL 737 (807)
Q Consensus 659 ~~It~edI~~Ai~rv~~g~~~~~~~l~~~ek~~iA~HEaGhAvva~lL~~~~~~~v~~i~kVtI~pRg-~alG~~~~~~~ 737 (807)
..|+.+|+..|++++..+..++...+++.+++.+++||+|||++++.+++. +++.+++|+||| +++||+++.|.
T Consensus 242 ~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~-----~~~~~~~i~prg~~alg~~~~~p~ 316 (476)
T 2ce7_A 242 DKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNG-----EPVHRISIIPRGYKALGYTLHLPE 316 (476)
T ss_dssp SSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTC-----CCCCEEECC---------------
T ss_pred CEECHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC-----CCCCEEEEECCCCCCCCEEEECCC
T ss_conf 823399999999998557443430321001046379986247876314776-----543504660574200412787673
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 65212258989999999999539999998848987665776699999999999984226898888
Q 003619 738 DDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLAHGIWRIQWSYMENHL 802 (807)
Q Consensus 738 ~e~~~~~~tk~~ll~~I~vlLAGRAAEel~fG~~stGas~Ddl~~At~lA~~~v~~~~Gfm~~~~ 802 (807)
++.+.++ +.+++++|+++|||||||+++||++||||++| |++||.+|+.||++ || |++.+
T Consensus 317 -~~~~~~~-~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~D-l~~at~~a~~mv~~-~g-m~~~~ 376 (476)
T 2ce7_A 317 -EDKYLVS-RNELLDKLTALLGGRAAEEVVFGDVTSGAAND-IERATEIARNMVCQ-LG-MSEEL 376 (476)
T ss_dssp ---CCSCB-HHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHH-HHHHHHHHHHHHHT-SC-CCTTT
T ss_pred -CCCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHHH-HC-CCCCC
T ss_conf -1123267-99999999998758999960237977450789-99999999999998-48-88768
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=524.13 Aligned_cols=380 Identities=44% Similarity=0.766 Sum_probs=346.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 44434432111024789885457433638999999999999149023310299899539998599984999999999941
Q 003619 403 QGIDFSRSKAEARVDGSTGVKFSDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEA 482 (807)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~v~F~dIvG~devkeeL~eiI~~L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea 482 (807)
...+|++++++..... +.++|+||+|++++++++++++.++.++..+..++.+.|+|+||+||||||||+||+++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 10 SAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp --------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEECCC-CCCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8777566764363269-999999818839999999999998306065541468788638998999988999999998874
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99889981712578985321479999999988289937996330056531027656751011013148999999999985
Q 003619 483 GVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIE 562 (807)
Q Consensus 483 ~~pfi~is~sel~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~e 562 (807)
+.+|+.++++++.+.++|....+++.+|+.++...|||+||||||.++..++..... ...+...++++++.+
T Consensus 89 ~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~--------~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 89 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG--------GNDEREQTLNQLLVE 160 (499)
T ss_dssp TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT--------SSHHHHHHHHHHHHH
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC--------CCHHHHHHHHHHHHH
T ss_conf 898799833687776421589999999999871599889974298898742467678--------748999999999987
Q ss_pred HCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHH
Q ss_conf 21988998158983158668789345788633378813689988999999998602888874377889861999969999
Q 003619 563 LDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARL 642 (807)
Q Consensus 563 LDgl~~~~~VIVIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL 642 (807)
|++......+++|++||+|+.+|++++|||||++.|.+++|+.++|.+||+.++++..+..++++..++..++|++|+||
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred HCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHH
T ss_conf 41466676189999568845438312556614569852899999999999999826999768889999986389979999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 99999999998881998647988999997871698655732356761368999999999999842032333433201676
Q 003619 643 AQLVQEAALVAVRKGHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISI 722 (807)
Q Consensus 643 ~nLv~eAal~Airr~~~~It~edI~~Ai~rv~~g~~~~~~~l~~~ek~~iA~HEaGhAvva~lL~~~~~~~v~~i~kVtI 722 (807)
+++|++|++.|.+++...|+.+|+..|++++..+..++...+++.+++.+++||+|||++++++++. +++++++|
T Consensus 241 ~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~-----~~v~~~~i 315 (499)
T 2dhr_A 241 ENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHA-----DGVHKVTI 315 (499)
T ss_dssp HHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSC-----CCCCCEES
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CEEEEEEE
T ss_conf 9999999999998289865799999999987236443321124777762189999899998665788-----70667874
Q ss_pred ECCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 20786574057731665212258989999999999539999998848987665776699999999999984226898888
Q 003619 723 VPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRASVNYLADASWLAHGIWRIQWSYMENHL 802 (807)
Q Consensus 723 ~pRg~alG~~~~~~~~e~~~~~~tk~~ll~~I~vlLAGRAAEel~fG~~stGas~Ddl~~At~lA~~~v~~~~Gfm~~~~ 802 (807)
+||++++|+++ |..++.++.+ +.+++++|+++|||||||+++||++||||++| |++||.+|+.||++ || |++.+
T Consensus 316 ~pr~~~~g~~~--p~q~~~~~~t-~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~D-l~~at~~a~~mv~~-~g-m~~~~ 389 (499)
T 2dhr_A 316 VPRGRALGFMM--PRREDMLHWS-RKRLLDQIAVALAGRAAEEIVFDDVTTGAEND-FRQATELARRMITE-WG-MHPEF 389 (499)
T ss_dssp CCSSCTTCSSH--HHHTTCCCCC-HHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHH-HHHHHHHHHHHHTT-SC-CCSSS
T ss_pred ECCCCCCCCCC--CCHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHHHHH-HC-CCCCC
T ss_conf 04777676003--4146543048-99999999999643767786303567660879-99999999999998-38-88878
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.67 Aligned_cols=256 Identities=38% Similarity=0.674 Sum_probs=240.9
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 024789885457433638999999999999-1490233102998995399985999849999999999419988998171
Q 003619 414 ARVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGS 492 (807)
Q Consensus 414 ~~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~s 492 (807)
....+.|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHH
T ss_conf 35557999988882888999999999999987499999867999888258858999987899999998518885288868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 25789853214799999999882899379963300565310276567510110131489999999999852198899815
Q 003619 493 EFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGV 572 (807)
Q Consensus 493 el~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~V 572 (807)
++.++|+|+++..++.+|..|+..+||||||||||+++++|.....+ ...+...++++||.+||++....+|
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGG--------GDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSG--------GGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 95113354689999999999987099467653341111577888999--------7689999999999960433888875
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 89831586687893457886333788136899889999999986028888743778898619999699999999999999
Q 003619 573 IFLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (807)
Q Consensus 573 IVIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~ 652 (807)
+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|+++.++..++|+..+|..|.||||+||+++|++|++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 78812698144899672877676699769969999999999985599999657999999877999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8881998647988999997871698
Q 003619 653 AVRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 653 Airr~~~~It~edI~~Ai~rv~~g~ 677 (807)
|+++++..|+.+|+..|++++....
T Consensus 369 Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 369 ALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9986998759999999999985726
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=416.42 Aligned_cols=256 Identities=39% Similarity=0.680 Sum_probs=240.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
..+..++++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred EECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 43368998600557699999999999999876999998679997778844889996399999999998599879988799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|+++..++.+|..|+..+||||||||+|+++.+|...... ...+...++++||.++|++....+|+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG--------GEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS--------SCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 5314476699999999999986599189876122203667788877--------65899999999999724767889979
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98315866878934578863337881368998899999999860288887437788986199996999999999999998
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~A 653 (807)
||+|||+|+.|||||+||||||+.|+|++||.++|.+||+.|+++..+..++|++.+|..|.||||+||+++|++|++.|
T Consensus 324 VIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~A 403 (437)
T 4b4t_I 324 VIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLA 403 (437)
T ss_dssp EEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99957980555998864886027998089699999999999964899997679999997679998999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8819986479889999978716986
Q 003619 654 VRKGHESILSSDMDDAVDRLTVGPK 678 (807)
Q Consensus 654 irr~~~~It~edI~~Ai~rv~~g~~ 678 (807)
+++++..|+.+|+..|++++..+..
T Consensus 404 ir~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 404 LRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9848996699999999998707987
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=415.34 Aligned_cols=257 Identities=39% Similarity=0.662 Sum_probs=242.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
..+..|+++|+||+|++++|++|++.+.+ +.+|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 01579999878854599999999999998842999998779999981476489998099999999844689869988699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|+++..++.+|..|+..+||||||||+|+++.+|.....+ .......+++++|.+||++....+|+
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG--------GDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG--------GGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 5026677899999999999876178467522321101355676778--------62789999999999865557888379
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98315866878934578863337881368998899999999860288887437788986199996999999999999998
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~A 653 (807)
||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|+++..+..+++++.+|..|.||||+||+++|++|++.|
T Consensus 351 VIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~A 430 (467)
T 4b4t_H 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFA 430 (467)
T ss_dssp EEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 88287893117954636665507998389699999999999854899987779999997779999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 88199864798899999787169865
Q 003619 654 VRKGHESILSSDMDDAVDRLTVGPKR 679 (807)
Q Consensus 654 irr~~~~It~edI~~Ai~rv~~g~~~ 679 (807)
+++++..|+.+|+..|++++..+.++
T Consensus 431 ir~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 431 IRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 98388766999999999999647456
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=412.10 Aligned_cols=255 Identities=39% Similarity=0.678 Sum_probs=239.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
..+..|.++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 66889799867609579999999999999974999998679998872687794999889999999999599889986446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|.++..++.+|..|+..+||||||||+|+++.+|.....+ .......++++||.+||++....+|+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~--------~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKS--------GDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGG--------TTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 4313456389999999999986199089603325665225778888--------74699999999999713668889989
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98315866878934578863337881368998899999999860288887437788986199996999999999999998
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~A 653 (807)
||||||+|+.||||++||||||+.|+|++|+.++|.+||+.++++..+..++++..+|..|.||||+||+++|++|++.|
T Consensus 323 VIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a 402 (434)
T 4b4t_M 323 VLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIA 402 (434)
T ss_dssp EEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99948992233996715774038998089599999999999856899987679999998689989999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 881998647988999997871698
Q 003619 654 VRKGHESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 654 irr~~~~It~edI~~Ai~rv~~g~ 677 (807)
+++++..|+.+|+..|+.++....
T Consensus 403 ~r~~~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 403 LRNGQSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp HHHTCSSBCHHHHHHHHHSCSSSC
T ss_pred HHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 986998769999999999973777
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=411.25 Aligned_cols=254 Identities=42% Similarity=0.680 Sum_probs=239.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
.....|.++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 171 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 171 TSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp EEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHH
T ss_conf 33159998966717859999999999999874999998679897876999899998499999999998599989984146
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|+++..++.+|..|+..+||||||||+|+++.+|...... ...+...++++||.+||++....+|+
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~--------~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS--------ADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS--------STTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 2055201789999999999986389646420443333333447887--------53689999999999834666779869
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98315866878934578863337881368998899999999860288887437788986199996999999999999998
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~A 653 (807)
||+|||+|+.|||||+||||||+.|+|++|+.++|.+||+.|+++.....++|+..+|..|.||||+||+++|++|++.|
T Consensus 323 vI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~a 402 (437)
T 4b4t_L 323 IIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFA 402 (437)
T ss_dssp EEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99933990331897827771020013599699999999999865899986458999997689999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHCC
Q ss_conf 88199864798899999787169
Q 003619 654 VRKGHESILSSDMDDAVDRLTVG 676 (807)
Q Consensus 654 irr~~~~It~edI~~Ai~rv~~g 676 (807)
+++++..|+.+|+..|++++...
T Consensus 403 ir~~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 403 IRDDRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHTTCSSBCHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 98699877999999999998750
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=404.19 Aligned_cols=253 Identities=41% Similarity=0.666 Sum_probs=237.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
.....|+++|+||+|++++|++|++.+.+ +++|+.|..+|+++|+|+|||||||||||++|+|+|++++++|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 67789999888851699999999999999873999998679998865888898998889999999998679969993304
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|.++..++.+|..|+..+|||+||||+|+++..|.....+ ...+...++++||.+|||+....+|+
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~--------~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG--------SDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC--------CCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 4314546059999999999997399746300224330355678788--------87189999999999843878779979
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9831586687893457886333788136-899889999999986028888743778898619999699999999999999
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIR-APNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALV 652 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~-lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~ 652 (807)
||+|||+|+.||||++||||||+.|++| +|+.++|..||+.++++..+..++|+..+|..|.||||+||+++|++|++.
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~ 393 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLR 393 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99961981556966636875159998199999999999999985579999635899999777998899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 88819986479889999978716
Q 003619 653 AVRKGHESILSSDMDDAVDRLTV 675 (807)
Q Consensus 653 Airr~~~~It~edI~~Ai~rv~~ 675 (807)
|+++++..|+.+|+..|+.++..
T Consensus 394 a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 394 AVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 99879987799999999997617
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=391.23 Aligned_cols=235 Identities=41% Similarity=0.733 Sum_probs=219.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCH
Q ss_conf 24789885457433638999999999999-14902331029989953999859998499999999994199889981712
Q 003619 415 RVDGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSE 493 (807)
Q Consensus 415 ~~~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~se 493 (807)
.....+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCH
T ss_conf 44457887888817889999999999975666899997148888860798668778963999999998389668742411
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 57898532147999999998828993799633005653102765675101101314899999999998521988998158
Q 003619 494 FVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVI 573 (807)
Q Consensus 494 l~~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VI 573 (807)
+.++|+|++++.++.+|..|+..+||||||||||+++.+|+....+ ......+++++||++||++....+|+
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~--------~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD--------GGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 2103343689999999999997299635204256776315888889--------86699999999999974878779989
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98315866878934578863337881368998899999999860288887437788986199996999999999999998
Q 003619 574 FLAATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVA 653 (807)
Q Consensus 574 VIaATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~A 653 (807)
||||||+|+.||||++||||||+.|++++|+.++|.+||+.++++.++..++|+..+|+.|.||||+||+++|++|++.|
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a 698 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHH
T ss_pred EEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99937980438984717785507999799699999999999856799987789999997689999999999999999999
Q ss_pred HHHC
Q ss_conf 8819
Q 003619 654 VRKG 657 (807)
Q Consensus 654 irr~ 657 (807)
+++.
T Consensus 699 ~r~~ 702 (806)
T 3cf2_A 699 IRES 702 (806)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=370.75 Aligned_cols=250 Identities=40% Similarity=0.695 Sum_probs=230.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-HCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 789885457433638999999999999-1490233102998995399985999849999999999419988998171257
Q 003619 417 DGSTGVKFSDVAGIDEAVEELQELVRY-LKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFV 495 (807)
Q Consensus 417 ~~~~~v~F~dIvG~devkeeL~eiI~~-L~~pe~~~~lG~~~pkGILL~GPPGTGKTlLAkAIA~ea~~pfi~is~sel~ 495 (807)
...+.++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 45899990351499999999999999875198988635899997589779899988999999999719839999737954
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89853214799999999882899379963300565310276567510110131489999999999852198899815898
Q 003619 496 EVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKDTTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFL 575 (807)
Q Consensus 496 ~~~vG~s~~~ir~lF~~Ak~~~PsILfIDEIDsL~~~r~~~~~~~~d~~~~~~~~e~~~tLnqLL~eLDgl~~~~~VIVI 575 (807)
++|.|+++.+++.+|..|+..+||||||||||+++++++.... .....++++|+.+||++..+.+|+||
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~-----------~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-----------EVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC-----------TTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCC-----------HHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 3331678999999999999729929998510023344577887-----------39999999999997466666987999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 31586687893457886333788136899889999999986028888743778898619999699999999999999888
Q 003619 576 AATNRRDLLDPALLRPGRFDRKIRIRAPNAKGRTEILKIHASKVKMSDSVDLSSYAKNLPGWTGARLAQLVQEAALVAVR 655 (807)
Q Consensus 576 aATN~pd~LDpALlRpGRFdr~I~I~lPd~eeR~eILk~~l~~~~l~~dvdL~~LA~~T~G~SgaDL~nLv~eAal~Air 655 (807)
++||+++.||++|+|||||++.|++++|+.++|.+||+.++++..+..++++..+|..|.||+|+||.++|++|++.|.+
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~ 424 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96698032698885786361688668979899999999985689988643899999756899899999999999999998
Q ss_pred HCC-----------------CCCCHHHHHHHHHHHHCCC
Q ss_conf 199-----------------8647988999997871698
Q 003619 656 KGH-----------------ESILSSDMDDAVDRLTVGP 677 (807)
Q Consensus 656 r~~-----------------~~It~edI~~Ai~rv~~g~ 677 (807)
+.. ..++.+|+..|+..+....
T Consensus 425 r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 425 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCC
T ss_conf 414512000133204552255651999999997287831
Done!