Query 003620
Match_columns 807
No_of_seqs 685 out of 5219
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:52:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 1E-120 3E-125 996.5 51.1 690 15-766 2-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-115 1E-119 935.4 49.5 553 203-771 185-792 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 3E-100 6E-105 913.3 73.8 721 30-768 3-730 (733)
4 KOG0736 Peroxisome assembly fa 100.0 9.3E-88 2E-92 742.0 51.2 615 133-768 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 1.9E-73 4.1E-78 622.6 41.2 498 241-771 430-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 1.5E-67 3.3E-72 606.9 44.1 489 226-763 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 1.5E-58 3.3E-63 491.1 38.2 601 30-661 10-682 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 5.1E-60 1.1E-64 486.1 23.2 251 472-748 142-392 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 5.4E-56 1.2E-60 458.0 20.4 285 471-769 202-490 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 3.8E-50 8.3E-55 413.2 26.5 246 201-463 144-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 4.1E-51 8.9E-56 407.6 16.2 294 471-770 123-438 (439)
12 KOG0730 AAA+-type ATPase [Post 100.0 7.8E-49 1.7E-53 431.3 20.1 365 49-466 310-677 (693)
13 KOG0728 26S proteasome regulat 100.0 1.8E-48 3.9E-53 379.9 18.6 252 474-751 140-391 (404)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 6.9E-46 1.5E-50 416.5 39.0 399 301-767 81-484 (489)
15 KOG0734 AAA+-type ATPase conta 100.0 3E-48 6.5E-53 413.1 17.9 243 476-748 299-541 (752)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 3E-47 6.5E-52 411.7 24.7 273 195-468 498-774 (802)
17 KOG0727 26S proteasome regulat 100.0 9.6E-48 2.1E-52 375.2 18.6 252 474-751 148-400 (408)
18 KOG0729 26S proteasome regulat 100.0 2.4E-46 5.2E-51 368.0 18.0 266 464-763 160-425 (435)
19 KOG0726 26S proteasome regulat 100.0 9.1E-47 2E-51 375.3 15.1 250 473-748 177-426 (440)
20 KOG0652 26S proteasome regulat 100.0 2.1E-46 4.6E-51 367.3 16.6 249 474-748 164-412 (424)
21 KOG0737 AAA+-type ATPase [Post 100.0 3.7E-45 7.9E-50 379.3 19.6 285 477-767 88-380 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 1.8E-44 4E-49 409.4 21.2 246 476-748 306-553 (774)
23 PTZ00454 26S protease regulato 100.0 6.9E-44 1.5E-48 392.9 21.5 253 473-751 137-389 (398)
24 KOG0736 Peroxisome assembly fa 100.0 3E-43 6.5E-48 389.7 23.8 268 200-468 664-937 (953)
25 COG0465 HflB ATP-dependent Zn 100.0 4.6E-43 1E-47 392.6 18.5 291 475-794 144-447 (596)
26 PRK03992 proteasome-activating 100.0 9.5E-42 2.1E-46 378.4 23.4 259 471-755 121-379 (389)
27 COG1223 Predicted ATPase (AAA+ 100.0 2.9E-42 6.3E-47 338.7 16.6 243 475-751 115-358 (368)
28 PTZ00361 26 proteosome regulat 100.0 2.4E-41 5.1E-46 374.4 19.3 249 474-748 176-424 (438)
29 KOG0741 AAA+-type ATPase [Post 100.0 9.4E-42 2E-46 363.3 15.0 277 474-762 212-506 (744)
30 KOG0738 AAA+-type ATPase [Post 100.0 4.1E-40 8.8E-45 340.5 22.4 264 201-468 205-474 (491)
31 KOG0740 AAA+-type ATPase [Post 100.0 4.8E-41 1E-45 362.1 16.2 278 472-769 144-425 (428)
32 KOG0728 26S proteasome regulat 100.0 6.9E-40 1.5E-44 319.9 19.7 246 201-463 140-388 (404)
33 KOG0652 26S proteasome regulat 100.0 2.8E-39 6E-44 317.3 22.4 273 174-463 131-412 (424)
34 KOG0651 26S proteasome regulat 100.0 2.7E-40 5.9E-45 333.0 12.3 247 476-748 127-373 (388)
35 KOG0727 26S proteasome regulat 100.0 5E-39 1.1E-43 314.2 20.1 246 201-463 148-396 (408)
36 KOG0734 AAA+-type ATPase conta 100.0 5.2E-39 1.1E-43 342.7 21.2 228 201-429 297-524 (752)
37 KOG0732 AAA+-type ATPase conta 100.0 7.2E-39 1.6E-43 372.2 23.4 387 203-590 260-669 (1080)
38 TIGR01241 FtsH_fam ATP-depende 100.0 6.6E-39 1.4E-43 367.9 23.0 249 474-749 48-296 (495)
39 KOG0726 26S proteasome regulat 100.0 2E-39 4.3E-44 323.0 15.4 246 201-463 178-426 (440)
40 TIGR03689 pup_AAA proteasome A 100.0 1.4E-38 3E-43 356.5 22.8 251 473-747 174-477 (512)
41 KOG0735 AAA+-type ATPase [Post 100.0 2.7E-38 5.7E-43 347.2 23.2 229 204-432 663-891 (952)
42 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-37 2.7E-42 306.1 25.0 303 133-463 50-355 (368)
43 TIGR01242 26Sp45 26S proteasom 100.0 4.6E-38 1E-42 347.9 21.9 250 473-748 114-363 (364)
44 KOG0729 26S proteasome regulat 100.0 6.2E-38 1.4E-42 308.7 18.3 229 201-430 170-402 (435)
45 CHL00176 ftsH cell division pr 100.0 1.7E-37 3.7E-42 359.2 22.9 246 476-748 178-423 (638)
46 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-36 2.6E-41 304.2 16.6 227 202-431 127-355 (439)
47 PTZ00454 26S protease regulato 100.0 1.2E-35 2.6E-40 327.6 25.8 246 201-463 138-386 (398)
48 KOG0732 AAA+-type ATPase conta 100.0 8.3E-37 1.8E-41 355.1 17.1 265 476-753 260-530 (1080)
49 PRK10733 hflB ATP-dependent me 100.0 4.8E-36 1E-40 351.7 22.2 291 476-793 147-448 (644)
50 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.6E-36 1E-40 361.1 21.0 227 500-761 1615-1897(2281)
51 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-35 3E-40 308.0 19.7 228 203-432 87-317 (386)
52 KOG0731 AAA+-type ATPase conta 100.0 2.4E-35 5.1E-40 335.3 22.7 228 203-431 306-538 (774)
53 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-34 2.5E-39 347.7 26.5 267 202-468 447-715 (733)
54 PLN00020 ribulose bisphosphate 100.0 1.9E-34 4.2E-39 302.7 23.0 219 479-705 113-354 (413)
55 COG0464 SpoVK ATPases of the A 100.0 4.3E-34 9.4E-39 329.3 25.5 250 201-466 235-486 (494)
56 PRK03992 proteasome-activating 100.0 5.5E-34 1.2E-38 316.4 25.2 251 201-468 124-377 (389)
57 PTZ00361 26 proteosome regulat 100.0 3.8E-34 8.3E-39 317.0 22.7 246 201-463 176-424 (438)
58 TIGR02639 ClpA ATP-dependent C 100.0 6.5E-32 1.4E-36 322.8 34.9 444 203-707 177-716 (731)
59 COG0465 HflB ATP-dependent Zn 100.0 5.1E-33 1.1E-37 311.9 20.2 229 203-432 145-376 (596)
60 PRK11034 clpA ATP-dependent Cl 100.0 1.6E-31 3.4E-36 314.6 32.6 447 206-707 184-720 (758)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 1.1E-31 2.4E-36 301.9 25.6 242 203-467 223-467 (489)
62 TIGR01242 26Sp45 26S proteasom 100.0 4.2E-31 9.2E-36 292.4 28.0 245 201-462 115-362 (364)
63 TIGR01241 FtsH_fam ATP-depende 100.0 2.9E-31 6.3E-36 304.8 23.9 244 202-463 49-295 (495)
64 KOG0651 26S proteasome regulat 100.0 4.5E-32 9.7E-37 273.8 13.0 229 201-429 125-356 (388)
65 TIGR03689 pup_AAA proteasome A 100.0 7.1E-31 1.5E-35 294.4 22.3 221 201-427 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 5.1E-30 1.1E-34 297.1 23.0 243 203-463 178-423 (638)
67 KOG0740 AAA+-type ATPase [Post 100.0 4.1E-30 8.9E-35 277.5 17.9 261 201-468 146-409 (428)
68 PLN00020 ribulose bisphosphate 100.0 2E-28 4.3E-33 257.5 21.5 217 206-427 113-352 (413)
69 TIGR03345 VI_ClpV1 type VI sec 100.0 2.2E-27 4.7E-32 285.2 33.2 455 203-707 182-835 (852)
70 CHL00095 clpC Clp protease ATP 100.0 3.8E-27 8.1E-32 284.9 34.7 457 205-707 176-786 (821)
71 PRK10733 hflB ATP-dependent me 100.0 3.1E-28 6.6E-33 285.9 24.1 242 204-463 148-392 (644)
72 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.5E-28 3.3E-33 296.8 21.1 200 226-431 1614-1862(2281)
73 TIGR03346 chaperone_ClpB ATP-d 100.0 1.7E-26 3.7E-31 279.9 33.9 456 204-708 169-831 (852)
74 PRK10865 protein disaggregatio 100.0 1.7E-26 3.6E-31 278.5 32.6 455 204-707 174-833 (857)
75 COG0542 clpA ATP-binding subun 99.9 1.7E-25 3.6E-30 257.4 31.0 454 205-706 167-758 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 2.8E-23 6E-28 211.2 9.2 187 479-667 140-342 (423)
77 CHL00181 cbbX CbbX; Provisiona 99.9 2.6E-22 5.7E-27 213.3 16.2 215 480-708 22-260 (287)
78 KOG0743 AAA+-type ATPase [Post 99.9 5E-22 1.1E-26 213.0 15.4 222 478-708 198-429 (457)
79 TIGR02880 cbbX_cfxQ probable R 99.9 6.8E-22 1.5E-26 210.4 14.4 213 482-707 23-258 (284)
80 KOG0742 AAA+-type ATPase [Post 99.9 1.5E-21 3.3E-26 203.4 15.5 181 512-699 381-589 (630)
81 TIGR02881 spore_V_K stage V sp 99.9 2E-21 4.4E-26 205.2 15.9 214 480-707 5-243 (261)
82 PF00004 AAA: ATPase family as 99.9 1.5E-21 3.3E-26 183.9 11.8 130 518-651 1-132 (132)
83 PF00004 AAA: ATPase family as 99.8 3.3E-19 7.2E-24 167.9 15.6 130 245-375 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 9.7E-18 2.1E-22 178.4 19.1 213 207-430 22-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 1E-17 2.2E-22 178.4 18.4 211 209-429 23-256 (284)
86 TIGR02881 spore_V_K stage V sp 99.8 4.2E-17 9.2E-22 172.3 19.6 175 207-392 5-194 (261)
87 PF05496 RuvB_N: Holliday junc 99.7 2.9E-17 6.4E-22 163.3 14.4 188 477-697 20-224 (233)
88 TIGR00763 lon ATP-dependent pr 99.7 4.1E-17 9E-22 196.6 16.7 204 481-705 320-557 (775)
89 TIGR02639 ClpA ATP-dependent C 99.7 6.8E-17 1.5E-21 193.8 17.9 242 478-766 179-451 (731)
90 KOG0744 AAA+-type ATPase [Post 99.7 3.4E-17 7.4E-22 167.1 9.6 173 215-389 149-340 (423)
91 KOG0743 AAA+-type ATPase [Post 99.7 3.4E-16 7.5E-21 168.3 16.2 178 205-390 198-384 (457)
92 TIGR00635 ruvB Holliday juncti 99.7 1.3E-15 2.8E-20 165.1 20.6 191 479-702 2-209 (305)
93 PRK00080 ruvB Holliday junctio 99.7 1.1E-15 2.3E-20 167.2 20.0 236 477-768 21-273 (328)
94 KOG0742 AAA+-type ATPase [Post 99.7 4.3E-16 9.2E-21 163.1 15.5 175 241-421 383-587 (630)
95 COG2256 MGS1 ATPase related to 99.7 1.7E-15 3.6E-20 160.2 18.5 177 477-698 20-213 (436)
96 PF05496 RuvB_N: Holliday junc 99.7 1E-15 2.2E-20 152.3 14.7 182 200-410 16-214 (233)
97 PRK11034 clpA ATP-dependent Cl 99.7 9.3E-16 2E-20 181.6 15.5 198 479-701 184-408 (758)
98 KOG1051 Chaperone HSP104 and r 99.6 3.3E-14 7.2E-19 166.7 27.2 157 210-389 189-363 (898)
99 COG2255 RuvB Holliday junction 99.6 1E-14 2.3E-19 147.4 18.4 193 477-702 22-231 (332)
100 PRK05342 clpX ATP-dependent pr 99.6 1.4E-14 3.1E-19 160.8 17.4 222 483-706 73-382 (412)
101 KOG2004 Mitochondrial ATP-depe 99.6 1.8E-14 3.8E-19 160.8 16.5 165 481-666 411-597 (906)
102 TIGR00763 lon ATP-dependent pr 99.6 1.9E-14 4.1E-19 173.7 18.1 164 208-389 320-505 (775)
103 COG0466 Lon ATP-dependent Lon 99.6 3.5E-14 7.7E-19 159.7 18.1 202 481-712 323-551 (782)
104 TIGR00390 hslU ATP-dependent p 99.6 2.7E-14 5.8E-19 154.9 16.4 176 482-661 13-342 (441)
105 PRK12323 DNA polymerase III su 99.6 2E-14 4.3E-19 163.2 15.1 186 477-700 12-231 (700)
106 PRK07003 DNA polymerase III su 99.6 5.2E-14 1.1E-18 161.7 18.1 186 477-700 12-226 (830)
107 COG2255 RuvB Holliday junction 99.6 2.6E-14 5.6E-19 144.5 13.5 181 201-410 19-216 (332)
108 PRK10787 DNA-binding ATP-depen 99.6 7.4E-14 1.6E-18 166.9 19.1 226 481-747 322-581 (784)
109 PRK05201 hslU ATP-dependent pr 99.6 2.9E-14 6.4E-19 154.7 14.0 176 482-661 16-344 (443)
110 PRK10865 protein disaggregatio 99.6 3E-14 6.4E-19 172.7 15.3 165 478-668 175-357 (857)
111 TIGR03345 VI_ClpV1 type VI sec 99.6 2.4E-14 5.2E-19 172.9 14.2 186 477-688 183-391 (852)
112 PRK14962 DNA polymerase III su 99.5 1E-13 2.2E-18 156.8 18.2 172 477-685 10-210 (472)
113 TIGR00382 clpX endopeptidase C 99.5 7.1E-14 1.5E-18 154.2 16.4 223 482-706 78-388 (413)
114 PRK14956 DNA polymerase III su 99.5 7.9E-14 1.7E-18 155.0 16.5 184 477-698 14-226 (484)
115 TIGR02902 spore_lonB ATP-depen 99.5 5.5E-14 1.2E-18 162.2 15.7 210 477-747 61-331 (531)
116 PRK13342 recombination factor 99.5 1.5E-13 3.3E-18 154.7 18.9 179 478-699 9-201 (413)
117 PRK00080 ruvB Holliday junctio 99.5 2.5E-13 5.4E-18 148.6 20.0 191 201-421 18-225 (328)
118 PRK07940 DNA polymerase III su 99.5 6.1E-14 1.3E-18 155.0 14.9 191 479-695 3-215 (394)
119 TIGR00635 ruvB Holliday juncti 99.5 3.2E-13 7E-18 146.4 19.8 187 206-422 2-205 (305)
120 PRK00149 dnaA chromosomal repl 99.5 8.8E-14 1.9E-18 158.5 14.6 173 516-704 149-332 (450)
121 COG2256 MGS1 ATPase related to 99.5 2.8E-13 6E-18 143.6 16.8 172 201-410 17-205 (436)
122 PRK04195 replication factor C 99.5 1.7E-13 3.7E-18 157.3 16.5 191 477-702 10-207 (482)
123 TIGR00362 DnaA chromosomal rep 99.5 1.4E-13 3E-18 155.0 15.1 172 516-704 137-320 (405)
124 TIGR03346 chaperone_ClpB ATP-d 99.5 1.3E-13 2.9E-18 167.9 15.1 184 478-687 170-376 (852)
125 PRK14949 DNA polymerase III su 99.5 4E-13 8.6E-18 157.4 18.2 185 477-699 12-225 (944)
126 PRK14960 DNA polymerase III su 99.5 3.4E-13 7.5E-18 153.6 17.2 186 477-700 11-225 (702)
127 PRK14961 DNA polymerase III su 99.5 4.9E-13 1.1E-17 147.9 18.0 185 477-699 12-225 (363)
128 TIGR02928 orc1/cdc6 family rep 99.5 6.7E-13 1.4E-17 147.7 18.7 202 481-705 15-257 (365)
129 KOG2004 Mitochondrial ATP-depe 99.5 2E-13 4.4E-18 152.5 13.5 164 208-389 411-596 (906)
130 CHL00095 clpC Clp protease ATP 99.5 1.1E-13 2.3E-18 168.3 12.2 186 477-688 175-382 (821)
131 PRK07994 DNA polymerase III su 99.5 1E-12 2.3E-17 152.0 19.7 185 477-699 12-225 (647)
132 PRK00411 cdc6 cell division co 99.5 7E-13 1.5E-17 149.2 16.9 203 481-705 30-265 (394)
133 PRK06645 DNA polymerase III su 99.5 9.8E-13 2.1E-17 149.3 17.8 189 476-702 16-237 (507)
134 PRK14963 DNA polymerase III su 99.5 9.6E-13 2.1E-17 150.1 16.9 184 477-698 10-221 (504)
135 PRK12422 chromosomal replicati 99.5 6.9E-13 1.5E-17 149.4 15.1 203 516-758 142-358 (445)
136 PRK14958 DNA polymerase III su 99.5 4.8E-13 1E-17 152.9 13.9 187 477-701 12-227 (509)
137 PRK05563 DNA polymerase III su 99.4 1.9E-12 4.1E-17 150.1 18.5 187 477-701 12-227 (559)
138 PRK14088 dnaA chromosomal repl 99.4 6.1E-13 1.3E-17 150.2 14.1 172 516-703 131-314 (440)
139 COG0466 Lon ATP-dependent Lon 99.4 4.1E-13 8.9E-18 151.2 12.3 166 206-389 321-508 (782)
140 PRK08691 DNA polymerase III su 99.4 1.6E-12 3.5E-17 149.6 17.3 187 477-701 12-227 (709)
141 PRK14964 DNA polymerase III su 99.4 1.7E-12 3.6E-17 146.2 16.0 187 477-701 9-224 (491)
142 PRK14951 DNA polymerase III su 99.4 3.9E-12 8.4E-17 147.1 19.3 187 477-701 12-232 (618)
143 PLN03025 replication factor C 99.4 2.1E-12 4.5E-17 140.7 16.0 181 477-699 9-202 (319)
144 KOG2028 ATPase related to the 99.4 5.2E-12 1.1E-16 131.2 17.9 209 516-775 163-395 (554)
145 PRK14086 dnaA chromosomal repl 99.4 1.8E-12 3.9E-17 148.0 15.6 172 516-703 315-497 (617)
146 PRK12402 replication factor C 99.4 3.7E-12 7.9E-17 140.2 17.6 190 477-702 11-231 (337)
147 PRK13341 recombination factor 99.4 2.3E-12 4.9E-17 152.3 16.2 181 477-699 24-222 (725)
148 TIGR02397 dnaX_nterm DNA polym 99.4 3.5E-12 7.6E-17 141.4 16.9 187 476-700 9-224 (355)
149 PRK07764 DNA polymerase III su 99.4 3.4E-12 7.5E-17 152.5 17.9 185 477-699 11-226 (824)
150 PRK14952 DNA polymerase III su 99.4 2.6E-12 5.7E-17 148.0 16.2 187 477-701 9-226 (584)
151 PRK14959 DNA polymerase III su 99.4 2.5E-12 5.4E-17 147.6 15.8 182 477-696 12-222 (624)
152 PF05673 DUF815: Protein of un 99.4 7.7E-12 1.7E-16 126.5 16.9 193 474-697 20-244 (249)
153 PRK07133 DNA polymerase III su 99.4 1.2E-11 2.7E-16 143.9 21.0 192 476-699 13-224 (725)
154 TIGR02903 spore_lon_C ATP-depe 99.4 2.2E-11 4.8E-16 142.8 23.0 223 477-749 150-431 (615)
155 PRK14969 DNA polymerase III su 99.4 2.2E-12 4.7E-17 148.5 14.0 187 477-701 12-227 (527)
156 KOG0989 Replication factor C, 99.4 3.6E-12 7.8E-17 130.5 13.2 182 476-696 31-229 (346)
157 PRK14957 DNA polymerase III su 99.4 5.3E-12 1.1E-16 144.2 16.0 185 477-699 12-225 (546)
158 PRK05896 DNA polymerase III su 99.4 1.2E-11 2.6E-16 141.2 18.2 186 477-700 12-226 (605)
159 PTZ00112 origin recognition co 99.4 1.4E-11 3E-16 142.1 18.4 161 518-694 784-978 (1164)
160 PRK10787 DNA-binding ATP-depen 99.4 3.8E-11 8.2E-16 143.8 23.1 201 208-427 322-556 (784)
161 PHA02544 44 clamp loader, smal 99.4 6.5E-12 1.4E-16 136.9 15.2 156 477-665 17-173 (316)
162 PRK14956 DNA polymerase III su 99.4 2.1E-11 4.5E-16 135.9 19.2 178 200-411 10-216 (484)
163 PRK06893 DNA replication initi 99.4 4.6E-12 1E-16 131.1 13.1 159 517-698 41-207 (229)
164 TIGR03420 DnaA_homol_Hda DnaA 99.4 8E-12 1.7E-16 129.3 14.9 165 515-704 38-211 (226)
165 PRK14953 DNA polymerase III su 99.4 7.6E-12 1.6E-16 142.3 15.6 186 477-700 12-226 (486)
166 PRK14962 DNA polymerase III su 99.4 2.3E-11 5E-16 137.7 19.2 176 200-410 6-211 (472)
167 PRK14965 DNA polymerase III su 99.4 1.5E-11 3.1E-16 143.4 17.7 186 477-700 12-226 (576)
168 PF02359 CDC48_N: Cell divisio 99.4 4E-12 8.7E-17 110.2 9.8 80 30-111 1-85 (87)
169 PRK07003 DNA polymerase III su 99.3 2.5E-11 5.4E-16 139.9 18.9 180 200-413 8-216 (830)
170 PRK14970 DNA polymerase III su 99.3 1.5E-11 3.2E-16 136.9 16.5 191 477-699 13-214 (367)
171 PRK04195 replication factor C 99.3 2.5E-11 5.5E-16 139.4 18.7 181 200-409 6-194 (482)
172 PRK12323 DNA polymerase III su 99.3 1.9E-11 4E-16 139.3 16.9 186 201-421 9-228 (700)
173 PRK14087 dnaA chromosomal repl 99.3 1E-11 2.2E-16 140.4 14.4 172 516-704 142-329 (450)
174 TIGR02640 gas_vesic_GvpN gas v 99.3 9.5E-12 2.1E-16 131.4 13.0 131 516-665 22-198 (262)
175 PRK07940 DNA polymerase III su 99.3 4E-11 8.7E-16 132.7 18.3 185 206-418 3-214 (394)
176 PRK06647 DNA polymerase III su 99.3 1.6E-11 3.4E-16 141.9 15.3 183 477-697 12-223 (563)
177 PRK08451 DNA polymerase III su 99.3 3.3E-11 7.2E-16 137.0 17.6 188 477-702 10-226 (535)
178 PRK06305 DNA polymerase III su 99.3 2.2E-11 4.7E-16 137.8 16.0 182 477-696 13-224 (451)
179 PRK13342 recombination factor 99.3 6.6E-11 1.4E-15 133.4 19.1 171 201-410 5-189 (413)
180 PF05621 TniB: Bacterial TniB 99.3 2.1E-11 4.6E-16 127.2 13.5 206 477-706 33-273 (302)
181 PRK09111 DNA polymerase III su 99.3 4.6E-11 1E-15 138.6 17.5 192 477-700 20-239 (598)
182 TIGR02902 spore_lonB ATP-depen 99.3 6.1E-11 1.3E-15 137.1 18.1 199 200-427 57-313 (531)
183 PRK14948 DNA polymerase III su 99.3 1.6E-10 3.5E-15 135.0 21.5 183 477-697 12-225 (620)
184 PRK08903 DnaA regulatory inact 99.3 5.3E-11 1.2E-15 123.3 15.5 157 515-702 42-207 (227)
185 TIGR02928 orc1/cdc6 family rep 99.3 3.1E-10 6.8E-15 126.3 22.6 200 208-427 15-255 (365)
186 TIGR00390 hslU ATP-dependent p 99.3 2.6E-11 5.5E-16 132.0 13.3 176 209-386 13-343 (441)
187 PRK00440 rfc replication facto 99.3 1E-10 2.2E-15 127.6 17.7 180 477-698 13-204 (319)
188 PRK05342 clpX ATP-dependent pr 99.3 2.1E-10 4.7E-15 127.6 19.9 219 209-429 72-381 (412)
189 PLN03025 replication factor C 99.3 1.3E-10 2.9E-15 126.5 18.0 174 200-409 5-192 (319)
190 PRK08084 DNA replication initi 99.3 5.7E-11 1.2E-15 123.4 14.4 158 516-698 46-213 (235)
191 PRK00411 cdc6 cell division co 99.3 2.7E-10 6E-15 128.1 21.1 200 208-426 30-262 (394)
192 PRK05201 hslU ATP-dependent pr 99.3 2.8E-11 6.1E-16 131.7 12.2 176 209-386 16-345 (443)
193 PRK14961 DNA polymerase III su 99.3 1.6E-10 3.4E-15 128.0 18.4 185 201-420 9-222 (363)
194 TIGR01650 PD_CobS cobaltochela 99.3 1.7E-11 3.8E-16 130.3 10.3 142 512-667 61-235 (327)
195 PRK00149 dnaA chromosomal repl 99.3 9.2E-11 2E-15 133.8 16.9 155 243-410 149-315 (450)
196 PRK14954 DNA polymerase III su 99.3 1.7E-10 3.7E-15 134.0 19.3 187 477-701 12-235 (620)
197 PRK14949 DNA polymerase III su 99.3 2.3E-10 5.1E-15 134.5 20.3 191 201-420 9-222 (944)
198 PRK06645 DNA polymerase III su 99.3 2.2E-10 4.8E-15 130.3 19.6 194 201-423 14-234 (507)
199 PRK14955 DNA polymerase III su 99.2 3.6E-11 7.7E-16 134.7 12.8 187 477-701 12-235 (397)
200 PRK14960 DNA polymerase III su 99.2 2.2E-10 4.7E-15 131.0 19.0 187 201-422 8-223 (702)
201 PRK13407 bchI magnesium chelat 99.2 4.2E-11 9.1E-16 129.4 12.5 157 477-665 4-216 (334)
202 TIGR03420 DnaA_homol_Hda DnaA 99.2 3.9E-10 8.4E-15 116.7 19.3 180 211-423 20-206 (226)
203 PHA02544 44 clamp loader, smal 99.2 1.3E-10 2.8E-15 126.8 16.4 159 200-388 13-172 (316)
204 PRK07994 DNA polymerase III su 99.2 3.1E-10 6.8E-15 131.7 19.9 185 201-420 9-222 (647)
205 PF05673 DUF815: Protein of un 99.2 3.1E-10 6.6E-15 115.0 17.4 167 201-395 20-213 (249)
206 PRK05642 DNA replication initi 99.2 1.2E-10 2.6E-15 120.9 14.9 160 516-700 46-214 (234)
207 COG0488 Uup ATPase components 99.2 1.3E-10 2.8E-15 132.7 16.2 63 287-363 157-219 (530)
208 COG0593 DnaA ATPase involved i 99.2 9.4E-11 2E-15 128.0 14.3 175 515-706 113-298 (408)
209 PRK12402 replication factor C 99.2 5.3E-10 1.2E-14 123.0 20.4 180 201-409 8-218 (337)
210 COG1219 ClpX ATP-dependent pro 99.2 1.2E-10 2.6E-15 119.6 13.8 134 482-615 62-203 (408)
211 KOG2028 ATPase related to the 99.2 3E-10 6.4E-15 118.3 16.8 190 201-428 131-347 (554)
212 PRK08727 hypothetical protein; 99.2 1.9E-10 4.2E-15 119.3 15.3 145 516-684 42-195 (233)
213 TIGR00362 DnaA chromosomal rep 99.2 2.1E-10 4.7E-15 129.2 16.9 167 242-421 136-313 (405)
214 PRK06893 DNA replication initi 99.2 2E-10 4.2E-15 119.0 14.6 148 243-410 40-196 (229)
215 PRK14088 dnaA chromosomal repl 99.2 2E-10 4.4E-15 129.9 15.8 155 243-410 131-298 (440)
216 PRK14963 DNA polymerase III su 99.2 5.9E-10 1.3E-14 127.4 19.4 178 200-411 6-211 (504)
217 PRK14958 DNA polymerase III su 99.2 3.8E-10 8.1E-15 129.3 17.7 187 201-422 9-224 (509)
218 COG2812 DnaX DNA polymerase II 99.2 9.1E-11 2E-15 131.8 12.2 193 477-701 12-227 (515)
219 PRK14964 DNA polymerase III su 99.2 6.5E-10 1.4E-14 125.5 19.0 188 201-423 6-222 (491)
220 cd00009 AAA The AAA+ (ATPases 99.2 1.5E-10 3.3E-15 110.1 12.0 121 515-651 19-151 (151)
221 COG1224 TIP49 DNA helicase TIP 99.2 9.4E-10 2E-14 114.8 18.4 128 575-748 292-432 (450)
222 PF00308 Bac_DnaA: Bacterial d 99.2 6.3E-11 1.4E-15 121.5 9.7 168 517-701 36-215 (219)
223 PRK14950 DNA polymerase III su 99.2 1.9E-10 4E-15 134.9 14.9 183 477-697 12-224 (585)
224 PRK08691 DNA polymerase III su 99.2 6E-10 1.3E-14 128.7 18.4 188 201-423 9-225 (709)
225 PRK14971 DNA polymerase III su 99.2 4.6E-10 9.9E-15 131.3 17.6 185 477-699 13-227 (614)
226 cd00009 AAA The AAA+ (ATPases 99.2 6.6E-10 1.4E-14 105.6 15.5 121 241-374 18-150 (151)
227 PRK14086 dnaA chromosomal repl 99.2 5.2E-10 1.1E-14 128.1 16.8 166 243-420 315-490 (617)
228 PF00308 Bac_DnaA: Bacterial d 99.2 2.1E-09 4.6E-14 110.3 19.8 164 243-419 35-209 (219)
229 PRK14959 DNA polymerase III su 99.2 6.7E-10 1.5E-14 127.8 17.7 178 201-412 9-215 (624)
230 PRK06620 hypothetical protein; 99.2 2.2E-10 4.8E-15 117.0 12.4 143 516-697 45-192 (214)
231 COG1474 CDC6 Cdc6-related prot 99.2 7.5E-10 1.6E-14 121.5 17.0 178 515-707 42-250 (366)
232 PRK07764 DNA polymerase III su 99.2 1.1E-09 2.3E-14 131.4 19.6 176 200-409 7-213 (824)
233 PRK14952 DNA polymerase III su 99.1 1.6E-09 3.5E-14 125.1 20.0 186 201-421 6-222 (584)
234 PTZ00112 origin recognition co 99.1 1.2E-09 2.7E-14 126.4 18.5 180 208-407 755-968 (1164)
235 TIGR00382 clpX endopeptidase C 99.1 9.6E-10 2.1E-14 121.7 17.0 217 209-427 78-385 (413)
236 PRK08084 DNA replication initi 99.1 3.9E-09 8.5E-14 109.7 20.4 148 242-411 45-203 (235)
237 PRK05896 DNA polymerase III su 99.1 1.4E-09 3E-14 124.6 18.2 177 200-410 8-213 (605)
238 PRK14957 DNA polymerase III su 99.1 2.4E-09 5.2E-14 122.6 20.1 185 201-420 9-222 (546)
239 TIGR02640 gas_vesic_GvpN gas v 99.1 1.3E-09 2.8E-14 115.2 16.6 132 242-389 21-198 (262)
240 CHL00081 chlI Mg-protoporyphyr 99.1 4.3E-10 9.3E-15 121.8 13.0 161 476-665 12-232 (350)
241 COG0714 MoxR-like ATPases [Gen 99.1 3.3E-10 7.1E-15 124.0 12.3 132 515-666 43-204 (329)
242 PRK12422 chromosomal replicati 99.1 1E-09 2.2E-14 123.9 16.5 155 243-409 142-305 (445)
243 TIGR00678 holB DNA polymerase 99.1 6.2E-10 1.3E-14 111.8 12.9 142 515-685 14-183 (188)
244 TIGR02030 BchI-ChlI magnesium 99.1 4.2E-10 9E-15 122.0 12.3 155 479-665 2-219 (337)
245 PRK14951 DNA polymerase III su 99.1 2E-09 4.3E-14 124.8 18.7 185 201-420 9-227 (618)
246 PRK05563 DNA polymerase III su 99.1 2.3E-09 4.9E-14 124.6 19.1 187 201-422 9-224 (559)
247 PRK07133 DNA polymerase III su 99.1 2.8E-09 6.2E-14 124.4 19.6 183 201-411 11-213 (725)
248 KOG0989 Replication factor C, 99.1 1.3E-09 2.8E-14 112.0 14.7 179 200-410 28-223 (346)
249 PRK14969 DNA polymerase III su 99.1 1.4E-09 3.1E-14 125.3 17.0 187 201-422 9-224 (527)
250 COG1220 HslU ATP-dependent pro 99.1 2.1E-09 4.5E-14 111.4 16.1 83 576-662 252-346 (444)
251 PRK14970 DNA polymerase III su 99.1 3.5E-09 7.6E-14 117.9 19.1 176 200-409 9-201 (367)
252 PRK08903 DnaA regulatory inact 99.1 6.7E-09 1.4E-13 107.6 19.9 177 204-421 14-202 (227)
253 PRK13341 recombination factor 99.1 2.2E-09 4.8E-14 127.2 18.2 181 201-421 21-220 (725)
254 TIGR02397 dnaX_nterm DNA polym 99.1 2.8E-09 6E-14 118.3 18.1 176 200-409 6-210 (355)
255 COG2607 Predicted ATPase (AAA+ 99.1 3.6E-09 7.8E-14 105.1 16.5 196 472-698 51-277 (287)
256 PHA02244 ATPase-like protein 99.1 1.9E-09 4.1E-14 115.9 15.6 123 515-654 119-263 (383)
257 PRK09112 DNA polymerase III su 99.1 2.4E-09 5.3E-14 117.1 16.3 190 477-699 19-245 (351)
258 KOG1969 DNA replication checkp 99.1 1.6E-09 3.4E-14 122.3 14.9 166 514-706 325-519 (877)
259 PRK14953 DNA polymerase III su 99.1 4.8E-09 1E-13 119.6 19.1 191 201-420 9-222 (486)
260 PRK05564 DNA polymerase III su 99.1 2E-09 4.3E-14 117.0 15.4 176 479-688 2-185 (313)
261 smart00382 AAA ATPases associa 99.1 5.3E-10 1.2E-14 105.3 9.5 126 516-652 3-147 (148)
262 PF07728 AAA_5: AAA domain (dy 99.1 4.1E-11 8.9E-16 114.1 1.8 109 517-643 1-139 (139)
263 PRK08727 hypothetical protein; 99.1 3.9E-09 8.4E-14 109.6 16.6 146 243-410 42-197 (233)
264 PRK11331 5-methylcytosine-spec 99.1 6.8E-10 1.5E-14 122.5 11.4 124 515-654 194-361 (459)
265 PRK07471 DNA polymerase III su 99.1 7.9E-09 1.7E-13 113.7 19.5 177 477-687 15-232 (365)
266 PRK06305 DNA polymerase III su 99.1 6.8E-09 1.5E-13 117.7 19.5 176 200-409 9-214 (451)
267 PRK06647 DNA polymerase III su 99.1 5.9E-09 1.3E-13 120.7 19.3 185 201-420 9-222 (563)
268 PRK00440 rfc replication facto 99.0 6.2E-09 1.3E-13 113.6 18.2 176 200-410 9-196 (319)
269 PRK14965 DNA polymerase III su 99.0 4.4E-09 9.5E-14 122.8 17.7 176 201-410 9-213 (576)
270 PRK09087 hypothetical protein; 99.0 2.1E-09 4.6E-14 110.7 13.3 135 517-684 46-186 (226)
271 TIGR02903 spore_lon_C ATP-depe 99.0 1.6E-08 3.5E-13 118.8 22.2 180 201-407 147-385 (615)
272 PRK05642 DNA replication initi 99.0 8.1E-09 1.8E-13 107.2 17.3 146 242-409 45-200 (234)
273 TIGR03015 pepcterm_ATPase puta 99.0 4E-09 8.7E-14 112.2 15.3 190 518-749 46-267 (269)
274 PF07724 AAA_2: AAA domain (Cd 99.0 3.3E-10 7.1E-15 111.3 5.7 112 515-631 3-131 (171)
275 COG5271 MDN1 AAA ATPase contai 99.0 6E-09 1.3E-13 124.1 16.8 133 241-389 887-1047(4600)
276 PRK14087 dnaA chromosomal repl 99.0 6.4E-09 1.4E-13 117.8 16.8 167 243-423 142-324 (450)
277 COG1474 CDC6 Cdc6-related prot 99.0 2.2E-08 4.7E-13 110.0 20.1 199 210-429 19-248 (366)
278 COG1123 ATPase components of v 99.0 1.9E-09 4.2E-14 121.0 11.8 57 291-357 162-218 (539)
279 TIGR02442 Cob-chelat-sub cobal 99.0 2.2E-09 4.8E-14 126.9 13.1 155 479-665 2-214 (633)
280 PRK09111 DNA polymerase III su 99.0 1.8E-08 4E-13 117.1 19.9 193 200-421 16-236 (598)
281 TIGR01650 PD_CobS cobaltochela 99.0 1E-09 2.2E-14 116.9 8.6 136 241-390 63-234 (327)
282 COG5271 MDN1 AAA ATPase contai 99.0 2.1E-08 4.6E-13 119.7 20.0 134 513-665 1541-1703(4600)
283 PRK14948 DNA polymerase III su 99.0 1.7E-08 3.7E-13 118.2 19.6 176 201-411 9-216 (620)
284 PRK08451 DNA polymerase III su 99.0 1.7E-08 3.7E-13 115.1 18.9 189 200-423 6-223 (535)
285 PRK14954 DNA polymerase III su 99.0 2E-08 4.2E-13 117.1 19.7 183 201-411 9-222 (620)
286 PRK14955 DNA polymerase III su 99.0 7.9E-09 1.7E-13 115.8 15.9 177 200-410 8-221 (397)
287 PHA02244 ATPase-like protein 99.0 1.9E-08 4.1E-13 108.3 17.0 123 241-379 118-264 (383)
288 KOG0745 Putative ATP-dependent 99.0 1.7E-08 3.7E-13 107.8 16.3 99 516-614 227-331 (564)
289 smart00382 AAA ATPases associa 99.0 3.4E-09 7.3E-14 99.8 10.2 128 242-376 2-147 (148)
290 PRK07399 DNA polymerase III su 98.9 3.9E-09 8.6E-14 113.9 11.7 183 479-696 2-223 (314)
291 PRK04132 replication factor C 98.9 1.3E-08 2.9E-13 121.2 16.9 151 518-697 567-731 (846)
292 COG0542 clpA ATP-binding subun 98.9 6.4E-09 1.4E-13 121.3 13.6 167 477-668 166-349 (786)
293 PRK06620 hypothetical protein; 98.9 1.8E-08 4E-13 102.9 15.1 132 243-410 45-182 (214)
294 PRK14950 DNA polymerase III su 98.9 3.7E-08 8.1E-13 115.6 19.0 185 200-419 8-222 (585)
295 PRK05707 DNA polymerase III su 98.9 8.2E-09 1.8E-13 112.0 12.1 147 514-685 21-195 (328)
296 PRK13531 regulatory ATPase Rav 98.9 8.8E-09 1.9E-13 114.7 12.1 134 515-664 39-193 (498)
297 TIGR00764 lon_rel lon-related 98.9 1.3E-08 2.7E-13 119.3 14.0 55 473-542 10-64 (608)
298 PF01078 Mg_chelatase: Magnesi 98.9 6.4E-10 1.4E-14 110.5 2.6 143 479-655 1-205 (206)
299 COG0470 HolB ATPase involved i 98.9 8E-09 1.7E-13 112.9 11.5 125 517-662 26-178 (325)
300 PRK09087 hypothetical protein; 98.9 2.4E-08 5.3E-13 102.8 14.0 140 242-409 44-187 (226)
301 PRK13407 bchI magnesium chelat 98.9 7E-09 1.5E-13 112.2 10.1 159 203-388 3-215 (334)
302 COG2812 DnaX DNA polymerase II 98.9 1.5E-08 3.2E-13 114.1 12.7 194 201-423 9-225 (515)
303 COG0593 DnaA ATPase involved i 98.9 7.8E-08 1.7E-12 105.4 17.6 154 242-409 113-278 (408)
304 PF07726 AAA_3: ATPase family 98.9 6.9E-10 1.5E-14 101.2 1.3 104 517-643 1-129 (131)
305 KOG0927 Predicted transporter 98.8 7.4E-08 1.6E-12 106.1 17.0 29 237-265 96-124 (614)
306 PF06068 TIP49: TIP49 C-termin 98.8 3.1E-08 6.7E-13 105.5 13.8 65 480-552 23-89 (398)
307 PF07728 AAA_5: AAA domain (dy 98.8 7.1E-09 1.5E-13 98.6 7.6 109 244-367 1-139 (139)
308 PRK08058 DNA polymerase III su 98.8 1.4E-08 3E-13 110.9 10.6 154 479-663 3-180 (329)
309 PRK13549 xylose transporter AT 98.8 2.1E-08 4.5E-13 116.6 12.6 32 236-267 25-56 (506)
310 COG0714 MoxR-like ATPases [Gen 98.8 3.4E-08 7.3E-13 108.2 13.5 128 241-385 42-199 (329)
311 PRK09112 DNA polymerase III su 98.8 1.8E-07 4E-12 102.4 19.0 182 203-413 18-236 (351)
312 PRK10636 putative ABC transpor 98.8 1.4E-08 2.9E-13 120.8 10.7 31 236-266 21-51 (638)
313 PRK11331 5-methylcytosine-spec 98.8 6.2E-08 1.3E-12 107.2 14.7 121 242-375 194-357 (459)
314 smart00350 MCM minichromosome 98.8 2.9E-08 6.2E-13 114.7 12.4 163 483-666 205-401 (509)
315 PF07724 AAA_2: AAA domain (Cd 98.8 2.2E-08 4.7E-13 98.5 9.6 113 241-355 2-131 (171)
316 PRK14971 DNA polymerase III su 98.8 2E-07 4.4E-12 109.3 19.2 176 200-409 9-214 (614)
317 COG2607 Predicted ATPase (AAA+ 98.8 2E-07 4.4E-12 92.9 15.9 168 201-396 53-246 (287)
318 smart00763 AAA_PrkA PrkA AAA d 98.8 5E-08 1.1E-12 105.2 12.7 162 482-668 52-330 (361)
319 CHL00081 chlI Mg-protoporyphyr 98.8 3E-08 6.6E-13 107.5 10.9 160 203-388 12-231 (350)
320 KOG0991 Replication factor C, 98.8 2.4E-08 5.3E-13 98.5 9.1 181 477-697 23-214 (333)
321 PRK09700 D-allose transporter 98.7 4.2E-08 9.2E-13 114.1 12.0 31 236-266 25-55 (510)
322 KOG1969 DNA replication checkp 98.7 2E-07 4.3E-12 105.7 16.5 162 240-420 324-509 (877)
323 TIGR00678 holB DNA polymerase 98.7 1.4E-07 3.1E-12 94.6 14.1 142 242-409 14-183 (188)
324 PRK11147 ABC transporter ATPas 98.7 3E-08 6.4E-13 118.2 10.4 31 236-266 23-53 (635)
325 TIGR02030 BchI-ChlI magnesium 98.7 9.1E-08 2E-12 103.9 13.3 157 206-388 2-218 (337)
326 PRK10982 galactose/methyl gala 98.7 4.7E-08 1E-12 113.2 11.8 31 236-266 18-48 (491)
327 TIGR00368 Mg chelatase-related 98.7 4.5E-08 9.8E-13 111.6 11.4 144 478-655 189-394 (499)
328 PRK06964 DNA polymerase III su 98.7 3.3E-08 7.2E-13 107.3 9.7 133 513-664 19-203 (342)
329 COG1220 HslU ATP-dependent pro 98.7 1.1E-07 2.4E-12 98.8 12.7 83 302-386 251-346 (444)
330 TIGR00602 rad24 checkpoint pro 98.7 1.4E-07 3E-12 109.9 15.1 201 477-704 80-330 (637)
331 TIGR02655 circ_KaiC circadian 98.7 2.8E-07 6E-12 106.0 17.5 78 511-588 259-367 (484)
332 TIGR02031 BchD-ChlD magnesium 98.7 1.1E-07 2.3E-12 111.4 14.2 131 516-665 17-174 (589)
333 PRK10762 D-ribose transporter 98.7 7E-08 1.5E-12 112.0 12.5 31 236-266 24-54 (501)
334 PRK15439 autoinducer 2 ABC tra 98.7 5.2E-08 1.1E-12 113.3 10.7 31 236-266 31-61 (510)
335 COG4172 ABC-type uncharacteriz 98.7 3.2E-07 7E-12 97.7 15.5 56 289-354 163-218 (534)
336 TIGR00602 rad24 checkpoint pro 98.7 2.3E-07 4.9E-12 108.1 15.7 169 200-388 76-286 (637)
337 COG1224 TIP49 DNA helicase TIP 98.7 1.3E-06 2.8E-11 91.8 19.5 63 208-278 39-103 (450)
338 TIGR03269 met_CoM_red_A2 methy 98.7 8.9E-08 1.9E-12 111.7 12.4 30 237-266 21-50 (520)
339 PRK07471 DNA polymerase III su 98.7 6.4E-07 1.4E-11 98.7 18.3 179 203-412 14-233 (365)
340 PRK05564 DNA polymerase III su 98.7 5E-07 1.1E-11 98.3 17.3 169 206-409 2-182 (313)
341 PF05621 TniB: Bacterial TniB 98.7 5.4E-07 1.2E-11 94.5 16.6 178 242-431 61-274 (302)
342 PRK10938 putative molybdenum t 98.7 6.7E-08 1.5E-12 111.9 10.8 31 236-266 23-53 (490)
343 COG1219 ClpX ATP-dependent pro 98.7 5.9E-08 1.3E-12 100.1 8.9 98 242-339 97-203 (408)
344 PRK08116 hypothetical protein; 98.7 3.6E-08 7.7E-13 104.3 7.4 123 515-654 114-251 (268)
345 TIGR02633 xylG D-xylose ABC tr 98.7 1.2E-07 2.6E-12 110.2 12.4 32 236-267 21-52 (500)
346 PRK15134 microcin C ABC transp 98.7 7.8E-08 1.7E-12 112.4 11.0 32 236-267 29-60 (529)
347 KOG0991 Replication factor C, 98.7 2.3E-07 4.9E-12 91.8 12.3 136 200-363 19-162 (333)
348 PLN03073 ABC transporter F fam 98.7 6.7E-08 1.4E-12 115.5 10.4 30 236-265 197-226 (718)
349 PRK15064 ABC transporter ATP-b 98.7 8.6E-08 1.9E-12 112.1 10.9 31 236-266 21-51 (530)
350 PF01078 Mg_chelatase: Magnesi 98.7 3.8E-08 8.2E-13 98.0 6.7 46 207-267 2-47 (206)
351 PRK11608 pspF phage shock prot 98.6 1.4E-07 3E-12 102.9 10.8 193 480-702 5-240 (326)
352 PRK11288 araG L-arabinose tran 98.6 1.4E-07 3.1E-12 109.4 11.5 30 237-266 25-54 (501)
353 PF13177 DNA_pol3_delta2: DNA 98.6 1.1E-07 2.3E-12 92.9 8.8 134 485-652 1-161 (162)
354 TIGR02974 phageshock_pspF psp 98.6 2E-07 4.3E-12 101.7 11.6 168 516-702 23-233 (329)
355 PRK06871 DNA polymerase III su 98.6 4.2E-07 9.1E-12 98.0 13.8 128 514-664 23-178 (325)
356 KOG1942 DNA helicase, TBP-inte 98.6 4.1E-07 8.9E-12 92.7 12.7 38 515-552 64-103 (456)
357 KOG0066 eIF2-interacting prote 98.6 3.3E-07 7.2E-12 97.8 12.4 31 236-266 284-314 (807)
358 PRK09862 putative ATP-dependen 98.6 2.5E-07 5.4E-12 105.1 12.3 143 479-655 189-391 (506)
359 COG1221 PspF Transcriptional r 98.6 1E-07 2.3E-12 104.1 8.8 198 478-706 75-313 (403)
360 PRK13531 regulatory ATPase Rav 98.6 3.4E-07 7.3E-12 102.3 12.7 136 240-388 37-193 (498)
361 KOG1514 Origin recognition com 98.6 1.1E-06 2.3E-11 99.8 15.9 204 517-752 424-659 (767)
362 PRK13409 putative ATPase RIL; 98.6 1.8E-07 3.9E-12 109.8 10.1 29 239-267 96-124 (590)
363 PRK07993 DNA polymerase III su 98.6 4.2E-07 9.2E-12 99.0 11.9 149 514-685 23-196 (334)
364 PRK05707 DNA polymerase III su 98.6 1.3E-06 2.9E-11 94.9 15.7 148 242-411 22-197 (328)
365 COG0470 HolB ATPase involved i 98.6 5E-07 1.1E-11 98.7 12.7 124 244-385 26-177 (325)
366 PF06068 TIP49: TIP49 C-termin 98.6 2.6E-06 5.6E-11 91.2 17.3 63 208-278 24-88 (398)
367 PRK15424 propionate catabolism 98.6 2.1E-07 4.6E-12 106.9 9.9 195 479-701 217-464 (538)
368 TIGR01817 nifA Nif-specific re 98.5 4.6E-07 9.9E-12 106.0 12.8 197 477-703 192-429 (534)
369 PRK11388 DNA-binding transcrip 98.5 2.1E-07 4.6E-12 111.2 9.8 194 478-702 322-554 (638)
370 PF07726 AAA_3: ATPase family 98.5 2.6E-08 5.6E-13 91.0 1.5 104 244-367 1-129 (131)
371 TIGR02442 Cob-chelat-sub cobal 98.5 4.4E-07 9.5E-12 107.5 11.9 156 206-387 2-212 (633)
372 PRK08769 DNA polymerase III su 98.5 8.7E-07 1.9E-11 95.5 13.1 152 514-689 25-204 (319)
373 PRK11819 putative ABC transpor 98.5 2.6E-07 5.5E-12 108.6 9.7 31 236-266 27-57 (556)
374 KOG0062 ATPase component of AB 98.5 3.1E-06 6.8E-11 93.0 17.1 109 236-358 100-259 (582)
375 PRK04132 replication factor C 98.5 1.7E-06 3.6E-11 103.6 16.4 154 241-416 563-730 (846)
376 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2.7E-07 5.8E-12 108.4 9.5 31 236-266 25-55 (552)
377 COG1116 TauB ABC-type nitrate/ 98.5 4.1E-07 8.8E-12 92.3 9.3 31 236-266 23-53 (248)
378 PRK07399 DNA polymerase III su 98.5 3.4E-06 7.4E-11 91.2 16.9 179 206-415 2-219 (314)
379 PRK08116 hypothetical protein; 98.5 7.5E-07 1.6E-11 94.2 11.4 104 242-357 114-225 (268)
380 PF03215 Rad17: Rad17 cell cyc 98.5 1.9E-06 4.1E-11 98.8 15.4 171 516-703 46-269 (519)
381 KOG0745 Putative ATP-dependent 98.5 3.7E-07 7.9E-12 97.9 8.8 96 243-338 227-331 (564)
382 TIGR03015 pepcterm_ATPase puta 98.5 5.4E-06 1.2E-10 88.1 18.1 171 244-429 45-249 (269)
383 TIGR02329 propionate_PrpR prop 98.5 5.3E-07 1.2E-11 103.8 10.8 197 478-702 209-450 (526)
384 PF00158 Sigma54_activat: Sigm 98.5 2.1E-07 4.7E-12 91.2 6.3 97 516-629 23-143 (168)
385 PRK06090 DNA polymerase III su 98.5 1.1E-06 2.4E-11 94.5 12.0 128 514-663 24-178 (319)
386 KOG2227 Pre-initiation complex 98.5 6.6E-06 1.4E-10 89.6 17.7 179 513-705 173-382 (529)
387 PRK10261 glutathione transport 98.5 3.9E-07 8.4E-12 108.3 9.2 46 506-551 339-388 (623)
388 PRK05022 anaerobic nitric oxid 98.5 1E-06 2.3E-11 102.1 12.5 195 480-704 186-422 (509)
389 PRK08058 DNA polymerase III su 98.4 2E-06 4.2E-11 94.1 13.8 148 207-387 4-180 (329)
390 COG1120 FepC ABC-type cobalami 98.4 5.2E-07 1.1E-11 93.2 8.4 114 237-363 23-205 (258)
391 PRK15429 formate hydrogenlyase 98.4 2.2E-06 4.7E-11 103.2 15.1 196 478-702 373-609 (686)
392 PRK09302 circadian clock prote 98.4 5.5E-06 1.2E-10 96.4 17.6 78 511-588 269-377 (509)
393 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 7E-07 1.5E-11 91.8 8.3 72 289-371 145-216 (254)
394 COG0606 Predicted ATPase with 98.4 8.7E-08 1.9E-12 105.0 1.6 48 477-539 175-222 (490)
395 PRK13765 ATP-dependent proteas 98.4 1.4E-06 2.9E-11 102.0 11.3 53 473-540 23-75 (637)
396 PRK08699 DNA polymerase III su 98.4 7.8E-07 1.7E-11 96.5 8.6 131 513-663 19-183 (325)
397 COG3829 RocR Transcriptional r 98.4 7.4E-07 1.6E-11 99.1 8.2 196 477-701 241-478 (560)
398 PRK09183 transposase/IS protei 98.4 1.7E-06 3.8E-11 91.1 10.2 104 239-354 99-206 (259)
399 PRK10820 DNA-binding transcrip 98.4 1.9E-06 4.1E-11 100.0 11.4 196 477-702 200-437 (520)
400 cd03216 ABC_Carb_Monos_I This 98.3 6.9E-07 1.5E-11 87.4 6.4 111 236-357 20-145 (163)
401 PRK08181 transposase; Validate 98.3 1.6E-06 3.6E-11 91.2 9.6 101 241-354 105-209 (269)
402 KOG2680 DNA helicase TIP49, TB 98.3 8.2E-06 1.8E-10 83.7 14.1 90 630-748 339-429 (454)
403 COG1239 ChlI Mg-chelatase subu 98.3 2.8E-06 6E-11 92.2 11.1 159 477-667 13-234 (423)
404 PF00158 Sigma54_activat: Sigm 98.3 6.1E-06 1.3E-10 80.9 12.5 120 210-354 1-144 (168)
405 PF13401 AAA_22: AAA domain; P 98.3 3.7E-06 8E-11 78.8 10.6 98 242-351 4-125 (131)
406 PF13173 AAA_14: AAA domain 98.3 4.1E-06 8.9E-11 78.5 10.5 69 243-313 3-73 (128)
407 TIGR00368 Mg chelatase-related 98.3 6.1E-06 1.3E-10 94.4 13.6 48 205-267 189-236 (499)
408 PRK08181 transposase; Validate 98.3 7.2E-07 1.6E-11 93.9 5.6 71 515-587 106-180 (269)
409 COG1126 GlnQ ABC-type polar am 98.3 2.8E-06 6.1E-11 84.0 9.1 108 237-355 23-197 (240)
410 PRK07952 DNA replication prote 98.3 9.7E-07 2.1E-11 91.6 6.2 121 516-653 100-235 (244)
411 PRK06526 transposase; Provisio 98.3 2E-06 4.4E-11 90.0 8.3 101 241-354 97-201 (254)
412 COG1125 OpuBA ABC-type proline 98.3 1.8E-06 4E-11 87.0 7.4 32 236-267 21-52 (309)
413 COG3842 PotA ABC-type spermidi 98.3 1.5E-06 3.3E-11 93.8 7.4 110 236-355 25-198 (352)
414 cd03222 ABC_RNaseL_inhibitor T 98.3 1.6E-06 3.5E-11 85.7 7.0 111 237-357 20-135 (177)
415 PF13173 AAA_14: AAA domain 98.3 3E-06 6.4E-11 79.4 8.5 120 516-656 3-126 (128)
416 COG1239 ChlI Mg-chelatase subu 98.3 1.2E-05 2.6E-10 87.3 14.1 160 204-389 13-232 (423)
417 PRK09183 transposase/IS protei 98.3 1.1E-06 2.5E-11 92.4 5.9 71 515-586 102-176 (259)
418 COG1484 DnaC DNA replication p 98.2 6.7E-06 1.5E-10 86.2 11.5 72 241-313 104-179 (254)
419 PF13177 DNA_pol3_delta2: DNA 98.2 1.2E-05 2.7E-10 78.4 12.6 132 212-374 1-159 (162)
420 PRK12377 putative replication 98.2 6.9E-06 1.5E-10 85.5 11.4 70 242-313 101-175 (248)
421 PF13401 AAA_22: AAA domain; P 98.2 4.7E-06 1E-10 78.0 9.4 98 516-628 5-126 (131)
422 PF01637 Arch_ATPase: Archaeal 98.2 1.3E-05 2.9E-10 82.6 13.7 180 212-411 3-228 (234)
423 smart00350 MCM minichromosome 98.2 3.2E-06 7E-11 97.8 9.9 132 241-389 235-400 (509)
424 COG1136 SalX ABC-type antimicr 98.2 5.5E-06 1.2E-10 84.0 10.3 68 289-373 148-215 (226)
425 PRK06921 hypothetical protein; 98.2 5.4E-06 1.2E-10 87.6 10.7 69 241-312 116-188 (266)
426 COG4619 ABC-type uncharacteriz 98.2 4.7E-06 1E-10 78.8 8.8 32 236-267 23-54 (223)
427 PRK06835 DNA replication prote 98.2 1.3E-06 2.9E-11 94.7 5.7 69 516-586 184-258 (329)
428 PRK06964 DNA polymerase III su 98.2 1.1E-05 2.4E-10 87.8 12.7 133 240-388 19-203 (342)
429 PF01695 IstB_IS21: IstB-like 98.2 2E-06 4.3E-11 85.3 6.3 101 240-353 45-149 (178)
430 COG3839 MalK ABC-type sugar tr 98.2 3.1E-06 6.8E-11 90.9 8.2 110 236-355 23-195 (338)
431 PRK06526 transposase; Provisio 98.2 9.9E-07 2.2E-11 92.4 4.3 71 515-587 98-172 (254)
432 COG1118 CysA ABC-type sulfate/ 98.2 3.8E-06 8.2E-11 87.1 8.2 111 236-356 22-200 (345)
433 KOG0990 Replication factor C, 98.2 1E-05 2.3E-10 84.2 11.3 159 478-671 38-209 (360)
434 cd03214 ABC_Iron-Siderophores_ 98.2 2.2E-06 4.8E-11 85.4 6.3 112 236-357 19-161 (180)
435 PRK06871 DNA polymerase III su 98.2 5.9E-05 1.3E-09 81.6 17.6 127 242-388 24-178 (325)
436 PRK11608 pspF phage shock prot 98.2 1.4E-05 2.9E-10 87.4 13.0 149 207-383 5-184 (326)
437 COG2204 AtoC Response regulato 98.2 4.4E-06 9.5E-11 93.2 8.7 200 479-707 139-379 (464)
438 PRK08939 primosomal protein Dn 98.2 1.8E-06 4E-11 92.8 5.6 70 515-586 156-229 (306)
439 PRK06835 DNA replication prote 98.2 1.1E-05 2.4E-10 87.5 11.6 105 242-357 183-293 (329)
440 PRK05022 anaerobic nitric oxid 98.2 4.8E-05 1E-09 88.3 17.6 150 206-383 185-365 (509)
441 TIGR02031 BchD-ChlD magnesium 98.2 8.7E-06 1.9E-10 95.5 11.4 134 243-389 17-174 (589)
442 PRK07952 DNA replication prote 98.2 5.5E-06 1.2E-10 86.0 8.5 69 243-313 100-174 (244)
443 COG1124 DppF ABC-type dipeptid 98.2 6E-06 1.3E-10 83.3 8.4 112 236-357 27-205 (252)
444 COG1122 CbiO ABC-type cobalt t 98.2 3.4E-07 7.5E-12 94.3 -0.5 41 236-276 24-66 (235)
445 cd03228 ABCC_MRP_Like The MRP 98.2 6.5E-06 1.4E-10 81.2 8.6 110 236-357 22-158 (171)
446 COG1221 PspF Transcriptional r 98.1 5.5E-06 1.2E-10 90.8 8.6 126 203-353 73-223 (403)
447 PF14532 Sigma54_activ_2: Sigm 98.1 2E-06 4.3E-11 81.8 4.4 59 516-588 22-83 (138)
448 PF01637 Arch_ATPase: Archaeal 98.1 2.8E-06 6.1E-11 87.7 5.8 161 515-687 20-228 (234)
449 PF09336 Vps4_C: Vps4 C termin 98.1 2.1E-06 4.5E-11 68.7 3.6 36 733-768 27-62 (62)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 6E-06 1.3E-10 79.0 7.5 106 236-357 20-130 (144)
451 cd01120 RecA-like_NTPases RecA 98.1 9E-06 1.9E-10 78.8 8.9 110 245-355 2-138 (165)
452 KOG1970 Checkpoint RAD17-RFC c 98.1 5.9E-05 1.3E-09 83.8 15.9 172 517-703 112-321 (634)
453 PF01695 IstB_IS21: IstB-like 98.1 1.1E-06 2.4E-11 87.1 2.5 69 515-585 47-119 (178)
454 PRK15429 formate hydrogenlyase 98.1 6.2E-05 1.3E-09 90.8 17.9 150 205-383 373-554 (686)
455 TIGR02974 phageshock_pspF psp 98.1 1.1E-05 2.4E-10 88.0 10.4 145 211-383 2-177 (329)
456 COG3604 FhlA Transcriptional r 98.1 6.5E-06 1.4E-10 90.5 8.4 195 477-702 219-456 (550)
457 TIGR01817 nifA Nif-specific re 98.1 1.4E-05 3E-10 93.6 11.7 125 205-354 193-341 (534)
458 cd03246 ABCC_Protease_Secretio 98.1 8.6E-06 1.9E-10 80.6 8.5 109 237-356 23-158 (173)
459 PRK08939 primosomal protein Dn 98.1 9.9E-06 2.2E-10 87.2 9.5 70 241-312 155-228 (306)
460 COG2884 FtsE Predicted ATPase 98.1 1.3E-05 2.8E-10 77.6 9.1 112 236-358 22-201 (223)
461 cd03247 ABCC_cytochrome_bd The 98.1 9E-06 2E-10 80.8 8.5 110 236-357 22-160 (178)
462 PRK08699 DNA polymerase III su 98.1 1.9E-05 4.1E-10 85.8 11.4 130 241-387 20-183 (325)
463 PTZ00111 DNA replication licen 98.1 7.4E-06 1.6E-10 97.6 8.9 159 483-661 452-653 (915)
464 PRK06921 hypothetical protein; 98.1 3E-06 6.5E-11 89.5 5.1 68 515-585 117-188 (266)
465 COG1484 DnaC DNA replication p 98.1 4.5E-06 9.7E-11 87.5 6.3 68 514-586 104-179 (254)
466 cd03230 ABC_DR_subfamily_A Thi 98.1 5.4E-06 1.2E-10 82.0 6.6 111 236-357 20-158 (173)
467 cd03238 ABC_UvrA The excision 98.1 1.2E-05 2.6E-10 79.4 8.9 109 236-355 15-150 (176)
468 PF05729 NACHT: NACHT domain 98.1 3E-05 6.4E-10 75.5 11.7 140 244-390 2-164 (166)
469 COG0606 Predicted ATPase with 98.1 1.9E-06 4.2E-11 94.6 3.6 49 204-267 175-223 (490)
470 PF03215 Rad17: Rad17 cell cyc 98.1 7.4E-05 1.6E-09 85.8 16.5 66 200-273 11-76 (519)
471 PRK08769 DNA polymerase III su 98.1 0.00011 2.5E-09 79.2 17.0 150 242-412 26-203 (319)
472 cd00267 ABC_ATPase ABC (ATP-bi 98.1 5.6E-06 1.2E-10 80.5 6.3 112 236-358 19-144 (157)
473 PRK07993 DNA polymerase III su 98.1 5.4E-05 1.2E-09 82.6 14.6 127 242-387 24-178 (334)
474 KOG2035 Replication factor C, 98.1 4.5E-05 9.7E-10 77.9 12.7 150 516-693 35-224 (351)
475 PRK09862 putative ATP-dependen 98.1 1.5E-05 3.2E-10 90.8 10.5 125 239-379 207-391 (506)
476 PRK15424 propionate catabolism 98.1 1.2E-05 2.6E-10 92.6 9.7 125 205-354 216-373 (538)
477 COG4608 AppF ABC-type oligopep 98.1 8.9E-06 1.9E-10 83.8 7.7 110 236-355 33-171 (268)
478 TIGR02237 recomb_radB DNA repa 98.1 2.2E-05 4.8E-10 80.1 10.7 115 238-352 8-148 (209)
479 KOG1514 Origin recognition com 98.0 0.00013 2.9E-09 83.3 17.1 172 242-424 422-626 (767)
480 TIGR02915 PEP_resp_reg putativ 98.0 9E-06 2E-10 93.1 8.0 169 516-703 163-373 (445)
481 COG3829 RocR Transcriptional r 98.0 1.2E-05 2.7E-10 89.6 8.5 153 204-384 241-425 (560)
482 KOG1942 DNA helicase, TBP-inte 98.0 0.00021 4.6E-09 73.3 16.7 28 240-267 62-89 (456)
483 cd01120 RecA-like_NTPases RecA 98.0 3.4E-05 7.4E-10 74.7 10.9 110 518-631 2-138 (165)
484 KOG2035 Replication factor C, 98.0 0.00025 5.4E-09 72.6 17.0 177 203-413 8-224 (351)
485 cd03229 ABC_Class3 This class 98.0 7.5E-06 1.6E-10 81.4 6.2 112 236-357 20-164 (178)
486 COG1119 ModF ABC-type molybden 98.0 1.7E-05 3.7E-10 80.1 8.7 65 289-363 177-242 (257)
487 smart00763 AAA_PrkA PrkA AAA d 98.0 9.5E-06 2.1E-10 87.8 7.4 82 209-297 52-144 (361)
488 PRK06851 hypothetical protein; 98.0 0.00013 2.8E-09 79.9 16.2 34 516-549 215-251 (367)
489 PRK12377 putative replication 98.0 6.4E-06 1.4E-10 85.7 5.8 69 516-586 102-175 (248)
490 PRK10820 DNA-binding transcrip 98.0 5.1E-05 1.1E-09 88.2 13.6 152 203-382 199-381 (520)
491 COG1129 MglA ABC-type sugar tr 98.0 0.00011 2.4E-09 82.7 15.4 31 236-266 28-58 (500)
492 PF14532 Sigma54_activ_2: Sigm 98.0 1.5E-05 3.2E-10 75.7 7.3 59 242-314 21-82 (138)
493 PRK06090 DNA polymerase III su 98.0 0.00014 3E-09 78.5 15.5 127 242-387 25-178 (319)
494 PRK05917 DNA polymerase III su 98.0 3.3E-05 7.2E-10 81.7 10.4 120 514-652 18-154 (290)
495 COG1131 CcmA ABC-type multidru 98.0 1.5E-05 3.3E-10 85.5 7.9 113 237-359 26-202 (293)
496 PRK13406 bchD magnesium chelat 98.0 2.6E-05 5.6E-10 90.8 10.2 122 516-656 26-173 (584)
497 cd03223 ABCD_peroxisomal_ALDP 98.0 2.7E-05 5.8E-10 76.5 8.8 106 236-355 21-149 (166)
498 COG2204 AtoC Response regulato 98.0 4.5E-05 9.7E-10 85.2 11.5 151 206-384 139-320 (464)
499 PRK11388 DNA-binding transcrip 98.0 5.2E-05 1.1E-09 90.8 12.9 152 204-383 321-500 (638)
500 COG1127 Ttg2A ABC-type transpo 98.0 1.7E-05 3.6E-10 79.8 7.1 31 237-267 29-59 (263)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-120 Score=996.46 Aligned_cols=690 Identities=60% Similarity=1.002 Sum_probs=643.5
Q ss_pred CccchHHhhcCCCCCeEEEecccCCCCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHH
Q 003620 15 KDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVR 94 (807)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r 94 (807)
.+..++|+..+..+|.+.|++ .++....+.+++..|..+++..| |.+.|..+...++.+.-.+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 467889999999999999988 45545589999999999999999 99999887777665433344 778889999999
Q ss_pred hhcCCCCCCeEEEEecCCCCCCceEEeccccccccCcchhhHHHHHHHHhhhcCccccCCcEEEEecCceeEEEEEEEec
Q 003620 95 SNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD 174 (807)
Q Consensus 95 ~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~ 174 (807)
.++.++.|+.|.++.++.++.+.++.+.++..+.+++..+.++.+.+.|+...++++..|+++ ..+..+.|++++..
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999999888888888999999998888888888889999999999999999988 34455678888887
Q ss_pred CCceEEeCCCceEEecCCCCcccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCC
Q 003620 175 PGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 254 (807)
Q Consensus 175 ~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtG 254 (807)
+.. +++++|.+.+.+++......+ ..+++ .++||+..+++.+++++.+|+++|..+.++|+++|+++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 766 788899998888887655444 47778 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CeEEEEccchhccCCCCCCchhHHHHHHHHHH
Q 003620 255 KTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 255 KTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
||.+++++|++.++.++.+++++++.++.|++++.+|.+|+.+...+ |+++||||+|.+++++....+ +++|++.||+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999887665 8999999999
Q ss_pred HHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHH
Q 003620 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 334 ~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~ 413 (807)
++||++....+++|+++||+|+.||++++| |||+++++++.|+..+|.+|++.+++++++.++.++..++..+|||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999989999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccCCCCCcceeeeeccccccccccchhhHHHhh
Q 003620 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKREL 493 (807)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l 493 (807)
|+.++|++|++.+.++ +.++|..|+..++|+++|+..++.|+++|+||||++++|+.|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 456889999999999999999999999999999999999999
Q ss_pred HhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcC
Q 003620 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573 (807)
Q Consensus 494 ~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~ 573 (807)
++.|.||+++++.|.++|++|++|||||||||||||++||++|++++.+|++|++++++++|+|++|+.++++|++||+.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCC
Q 003620 574 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653 (807)
Q Consensus 574 ~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~ 653 (807)
+||||||||||+++..|+.+. +++.+||+++||++|||++..++|+||||||||+.||+|++||||||++||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999998543 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccc
Q 003620 654 EDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEV 733 (807)
Q Consensus 654 ~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (807)
.+.|.+||+.+++++|+.+++|+.+||+.|+|||||||.++|++|++.|+++.++ .
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------------------a 659 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------------------------A 659 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc------------------------c
Confidence 9999999999999999999999999999999999999999999999999999875 3
Q ss_pred ccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003620 734 SEIKAAHFEESMKFARRSVSDADIRKYQAFAQT 766 (807)
Q Consensus 734 ~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~ 766 (807)
..|+.+||++|++.+++|++.+++++|++|.++
T Consensus 660 ~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 660 TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 379999999999999999999999999999865
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-115 Score=935.39 Aligned_cols=553 Identities=49% Similarity=0.858 Sum_probs=510.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
+.+.|.+|||+++++.+|.+++.. ++||+.|.++|+.|++|||||||||||||+||++||++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 467899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCC----ceEEEEEecCCCCCCC
Q 003620 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 358 (807)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~viVI~atn~~~~ld 358 (807)
.|+++++++.+|+.|....|||+||||||++.++|...+.++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999989999999999999999998764 5799999999999999
Q ss_pred HHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcccccc--
Q 003620 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 436 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 436 (807)
|+|||.|||+++|.++.|++.+|.+||+..++++.+..+.++..+|..|+||+|+||.+||.+|+.-++++.++....
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886552210
Q ss_pred --------------ccch-----------------------------hhhhhhhhcccchhhHhhhhccCCCCCcceeee
Q 003620 437 --------------EDET-----------------------------IDAEILNSMAVSNEHFQTALGTSNPSALRETVV 473 (807)
Q Consensus 437 --------------~~~~-----------------------------~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~ 473 (807)
+.+. ...+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 001223456788999999999999999999999
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
.+|+++|+|||++++++.+|..+|.||.++++.|+.+|+..+.|+||+||||||||+||||+|++.+.|||+|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
+|||+||+.||.+|++||..+||||||||+|+|.++|+... ...+.|++||||++|||++.+.+|+||||||||+.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998753 567899999999999999999999999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhc--cCCCCccccHHHHHHHcC--CCCHHhHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR--KSPVSKDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~--~~~~~~~~dl~~la~~t~--g~sgadi~~l~~~A~~~a~~~~~~~ 709 (807)
|||+|||||||+++|+++|+.++|.+||+.+++ +.|++.++|+++||..+. |||||||..+|++|+..|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 789999999999999876 9999999999999999999998762
Q ss_pred HHHHHHhhcCCCcccccccccc--ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccc
Q 003620 710 DIERERRRRDNPEAMDEDAAED--EVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSR 771 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~ 771 (807)
.. ++++.... ....+|+.||++|++.++||+++.|-++|+...+++.-+.
T Consensus 741 ~~------------~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~ 792 (802)
T KOG0733|consen 741 ID------------SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLST 792 (802)
T ss_pred cc------------ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccc
Confidence 11 11110000 1235889999999999999999999999999998875433
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.6e-100 Score=913.35 Aligned_cols=721 Identities=50% Similarity=0.851 Sum_probs=637.1
Q ss_pred eEEEecccC-C-CCcEEEECHHHHhhcCCCCCCEEEEE-eCCCceEEEEEEc--CCCCCCCeEEEcHhHHhhcCCCCCCe
Q 003620 30 RLVVDEAIN-D-DNSVVGLHPDTMDKLQIFRGDTILIK-GKKRKDTICIALA--DDTCEQPKIRMNKVVRSNLRVRLGDV 104 (807)
Q Consensus 30 ~~~v~~~~~-~-g~~~v~~~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~ 104 (807)
.++|.++.+ + |+++++|+|+.|++||+..||+|.|. |++ .+++.+|+ ..+++.+.|+|++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 357888855 4 89999999999999999999999999 443 46778887 35788999999999999999999999
Q ss_pred EEEEecCCCCCCceEEeccccccccCcchhhHHHHHHHHhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEeCCC
Q 003620 105 VSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPD 184 (807)
Q Consensus 105 v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~ 184 (807)
|+|+++ .++.+..|.+.|..... .+..+..+++.++. .+++..|+.+.+........|+|+++.|.+++.++..
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERA-EVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeec-CCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 999995 47889999988864321 12344556777775 4789999998876444457899999999999999999
Q ss_pred ceEEecCCCCcccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 003620 185 TEIFCEGEPIKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (807)
Q Consensus 185 t~i~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (807)
|.+.+...+.........++++|+||||+++++++|++++.+|+.+|++++++++.+++++||+||||||||+|++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99877655443222234578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCce
Q 003620 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (807)
Q Consensus 265 ~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (807)
+++.+++.++++++.+++.|+.+..++.+|+.+..+.|++|||||+|.++++++...++.+.+++.+|+++|+++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999998877778889999999999999988889
Q ss_pred EEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHH
Q 003620 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (807)
Q Consensus 345 viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (807)
++||++||+++.+|+++++++||+..++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..+|++|++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHhhcc--ccccccchhhhhhhhhcccchhhHhhhhccCCCCCcceeeeeccccccccccchhhHHHhhHhhhcCCCC
Q 003620 425 QCIREKMD--VIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVE 502 (807)
Q Consensus 425 ~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~ 502 (807)
.++++... ........+..+......++..+|..++..+.|+.+++...+.|.++|++++|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 98887544 2222222333344456678899999999999999999988899999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEec
Q 003620 503 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582 (807)
Q Consensus 503 ~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDE 582 (807)
+++.+.++++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHH
Q 003620 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFK 662 (807)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~ 662 (807)
||++++.|+... ..+..++++++||++||++....+++||+|||+|+.||+|++||||||++|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 999999887542 234678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHH
Q 003620 663 ACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFE 742 (807)
Q Consensus 663 ~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 742 (807)
.++++.++..++|+..+|+.|+||||+||.++|++|++.|+++.+....... .. .. .........|+++||+
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~-----~~-~~--~~~~~~~~~i~~~~f~ 704 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK-----LE-VG--EEEFLKDLKVEMRHFL 704 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh-----hh-cc--cccccccCcccHHHHH
Confidence 9999999999999999999999999999999999999999998765321000 00 00 0000123479999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003620 743 ESMKFARRSVSDADIRKYQAFAQTLQ 768 (807)
Q Consensus 743 ~a~~~~~~s~~~~~~~~y~~~~~~~~ 768 (807)
+|++.++||++++++++|++|.++|.
T Consensus 705 ~al~~~~ps~~~~~~~~~~~~~~~~~ 730 (733)
T TIGR01243 705 EALKKVKPSVSKEDMLRYERLAKELK 730 (733)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999995
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-88 Score=742.00 Aligned_cols=615 Identities=36% Similarity=0.601 Sum_probs=497.3
Q ss_pred hhhHHHHHHHHhhhcCccccCCcEEEEecC------------------ceeEEEEEEEecCC---ceEEeCCCceEEecC
Q 003620 133 GNLFDAFLRPYFTEAYRPVRKGDLFLVRGG------------------MRSVEFKVIETDPG---EYCVVAPDTEIFCEG 191 (807)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~------------------~~~~~f~v~~~~~~---~~~~~~~~t~i~~~~ 191 (807)
.+..+..++.||+ ..|.++.||+|++... ...++|+|++.+|. .+++.++.|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3567778999997 6789999999987422 23578999999885 356667788887665
Q ss_pred CCCccc-ccccCCCC--CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 003620 192 EPIKRE-DEDRLDEV--GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (807)
Q Consensus 192 ~~~~~~-~~~~~~~~--~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (807)
....+. -......+ .+-..-+.+..+..+..++.- -..|. ..++.....+||+|+|||||||+++++|.+++.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p-~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSP-QKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCc-ccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 433220 00000000 122233444444434433322 12221 223344567999999999999999999999999
Q ss_pred eEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhh---cccCCceE
Q 003620 269 FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 345 (807)
Q Consensus 269 ~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~v 345 (807)
+++.++|.++.....+..+.++..+|+.|+...|+|||+-++|.+.-+... ..+.++.+.+..++. ......++
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999999865543 334455555544444 33467789
Q ss_pred EEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHH
Q 003620 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQ 425 (807)
Q Consensus 346 iVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 425 (807)
+||++|+..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.+..++.++.||+.+++.++.......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 677899999999999999999999999999999999999999999999999998766333
Q ss_pred H---HHhhccccccccchhhhhhhhhcccchhhHhhhhccCCCCCcce-eeeeccccccccccchhhHHHhhHhhhcCCC
Q 003620 426 C---IREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE-TVVEVPNVSWEDIGGLENVKRELQETVQYPV 501 (807)
Q Consensus 426 ~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~-~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~ 501 (807)
+ +.......................++.+||.+++...+...... ...++|+|+|+||||++++|..+.+.|..|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 2 22221000111111111223456788999999987654332222 2346899999999999999999999999999
Q ss_pred CchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEe
Q 003620 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 581 (807)
Q Consensus 502 ~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiD 581 (807)
+|+++|.. |++++.|||||||||||||.+|||+|.++..+|++|+|+||+++|+|+||+++|++|++||..+|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--CCCcEEEEecCCCCCCCCccccCCCCcceeEEecCC-CHHHHH
Q 003620 582 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEDSRH 658 (807)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p-~~~~r~ 658 (807)
|+|+++++||.+ ++++++++||++|||.||||+. +.+.|+|||||||||.||||||||||||+.+|++++ |.+.+.
T Consensus 772 ELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 772 ELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred cccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 999999999987 5678999999999999999998 578999999999999999999999999999999987 678899
Q ss_pred HHHHHHhccCCCCccccHHHHHHHc-CCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccc
Q 003620 659 QIFKACLRKSPVSKDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIK 737 (807)
Q Consensus 659 ~Il~~~~~~~~~~~~~dl~~la~~t-~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (807)
.+|+...+++.++.++|+.++|+.+ ..|||||+.++|.+|.+.|++|.+..-.. ..+.+++.+.....|+
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~---------g~~~~~e~~~~~v~V~ 921 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIES---------GTISEEEQESSSVRVT 921 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhh---------ccccccccCCceEEEE
Confidence 9999999999999999999999987 57999999999999999999998764321 1112222233456799
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003620 738 AAHFEESMKFARRSVSDADIRKYQAFAQTLQ 768 (807)
Q Consensus 738 ~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 768 (807)
++||.+++++..||+|..++.+|+..+.+|.
T Consensus 922 ~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 922 MEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999985
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-73 Score=622.64 Aligned_cols=498 Identities=37% Similarity=0.574 Sum_probs=425.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
...+|||+||+|||||.|+++++++.. +++..++|+.+.........+.+..+|..+..+.|+||++|++|.|+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 456799999999999999999999874 5678899998877766667778899999999999999999999999873
Q ss_pred CCC---CchhHHHHHHHHHHHHhhccc-CCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCC
Q 003620 317 REK---THGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM 392 (807)
Q Consensus 317 ~~~---~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~ 392 (807)
.+. ..+....++...|...++.+. .+..+.||++.+....++|.|-.+++|...+.++.|+..+|.+||...+.+.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 322 223344555444444444433 3456799999999999999999999999999999999999999999877654
Q ss_pred CCC-CchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccCCCCCccee
Q 003620 393 KLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRET 471 (807)
Q Consensus 393 ~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~ 471 (807)
... ...+++.++..|+||...|+..++.+|...++...... ....++.++|.++++.+.|.++|..
T Consensus 590 ~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 590 LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRGI 656 (952)
T ss_pred hhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhhc
Confidence 321 22356669999999999999999999988777433211 1125788999999999999999986
Q ss_pred eeecc-ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcc
Q 003620 472 VVEVP-NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 472 ~~~~~-~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~ 550 (807)
....+ .+.|+||||+.++|+.|++.++||.+++..|.+.+++.+.|+|||||||||||.||.++|..++.+||+|+|++
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE 736 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE 736 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH
Confidence 65444 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~ 630 (807)
++++|+|.+|+++|.+|.+|+..+|||+||||+|+++++||.+ ..|+.+|++||||++|||.+..++|+|+|||.||
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 9999999999999999999999999999999999999999874 4679999999999999999999999999999999
Q ss_pred CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 710 (807)
Q Consensus 631 ~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~ 710 (807)
+.||||||||||+|+.+++|+|++.+|.+|++.......++.++|++.+|.+|+|||||||+.++..|.+.|+++.+...
T Consensus 814 dliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 814 DLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred cccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHH--hhcCCCCCHHHHHHHHHHHHHHhccc
Q 003620 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESM--KFARRSVSDADIRKYQAFAQTLQQSR 771 (807)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~--~~~~~s~~~~~~~~y~~~~~~~~~~~ 771 (807)
.+ ++..+.++...+.... ...+||.+.-+-.+|.+...+|...+
T Consensus 894 ~~-----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 894 DE-----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred Cc-----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 10 1222334444443333 46788888888877777777776544
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-67 Score=606.94 Aligned_cols=489 Identities=56% Similarity=0.918 Sum_probs=452.6
Q ss_pred ccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEE
Q 003620 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 305 (807)
Q Consensus 226 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il 305 (807)
+|+.+++.++.+++.++.+++++||||+|||+++++++.. +..+..+++++..+++.|..+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 5778899999999999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHH
Q 003620 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (807)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il 385 (807)
++||+|.+++.+......+..+++.+++..++++. +..+++++.++++..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887666788999999999999998 44488899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccCCC
Q 003620 386 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNP 465 (807)
Q Consensus 386 ~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~p 465 (807)
+.+.+.+....+.++..++..++||.++++..+++++.+...++.. ........++.+++..++....|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999888888999999999999999999999999888777642 01123456788899999999888
Q ss_pred CCcceeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEE
Q 003620 466 SALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (807)
Q Consensus 466 s~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~ 545 (807)
+ ++.....+.++|.+++|++.+|+.+++.+.+|+.+++.|.+.++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 66777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEe
Q 003620 546 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 546 v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~ 625 (807)
+++++++++|+|+++++++.+|..|++..||||||||+|++++.|+.+. ++...+++++||++||+++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 9999999999999999999999999999999999999999999997653 2234799999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC--CCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 626 aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
|||+|+.||+|++||||||.+++||+||.++|.+||+.+++... +..++|+..+++.|+||||+||.++|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999543 5688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003620 704 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAF 763 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~ 763 (807)
++.. ...||++||.+|++.++|+++ |++|
T Consensus 464 ~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR-------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc-------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 9874 126999999999999999999 8888
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-58 Score=491.10 Aligned_cols=601 Identities=28% Similarity=0.441 Sum_probs=446.3
Q ss_pred eEEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEEcHhHHhhcCCCCCCeEE
Q 003620 30 RLVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVS 106 (807)
Q Consensus 30 ~~~v~~~~~~---g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~ 106 (807)
.++|..|... -.+.++++|...++-+ +..+... ..++..-....+++|.|.++..+|+|+++++|+.|.
T Consensus 10 ~~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~ 81 (744)
T KOG0741|consen 10 AFQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVE 81 (744)
T ss_pred eeeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeE
Confidence 3677666543 3556888888776433 2223221 245556666789999999999999999999999999
Q ss_pred EEecCCCC---CCceEEecc--c--c-ccccCcchh-hHHHHHHHHhhhcCccccCCcEEEEecCc-eeEEEEEEEec--
Q 003620 107 VHQCPDVK---YGKRVHILP--I--D-DTIEGVTGN-LFDAFLRPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETD-- 174 (807)
Q Consensus 107 v~~~~~~~---~~~~v~~~~--~--~-~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~-- 174 (807)
|.++.... +...+.+.. . . .+...+..+ +..++.+.|- ..++.+|+.+.+...+ ..+.++|..++
T Consensus 82 V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~ 158 (744)
T KOG0741|consen 82 VKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAF 158 (744)
T ss_pred EEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeee
Confidence 99864222 222333211 1 1 111223332 3344444443 3468899987665432 44566666553
Q ss_pred -C--------------CceEEeCCCceEEecCCCCc----------ccccccC--CCCCcc--cccChHHHHHHH-HHHH
Q 003620 175 -P--------------GEYCVVAPDTEIFCEGEPIK----------REDEDRL--DEVGYD--DVGGVRKQMAQI-RELV 224 (807)
Q Consensus 175 -~--------------~~~~~~~~~t~i~~~~~~~~----------~~~~~~~--~~~~~~--~i~G~~~~~~~l-~e~i 224 (807)
| -+++++..+|.|.+...... +.....+ ++..|+ .|||+++....| |+..
T Consensus 159 D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAF 238 (744)
T KOG0741|consen 159 DPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAF 238 (744)
T ss_pred ccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHH
Confidence 3 13678889998855332111 0111111 233344 489999999987 7888
Q ss_pred HccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-EEEEechhhhhhhhchhHHHHHHHHHHHHhc---
Q 003620 225 ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFCINGPEIMSKLAGESESNLRKAFEEAEKN--- 300 (807)
Q Consensus 225 ~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~--- 300 (807)
......|++.+++|+.+-+|+|||||||||||.+||.|...+++. ...|||+++.++|+|++++++|.+|.+|+..
T Consensus 239 AsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~ 318 (744)
T KOG0741|consen 239 ASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRR 318 (744)
T ss_pred HhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHh
Confidence 888899999999999999999999999999999999999999864 5789999999999999999999999999763
Q ss_pred -----CCeEEEEccchhccCCCCCCch--hHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 301 -----APSIIFIDEIDSIAPKREKTHG--EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 301 -----~p~Il~iDEid~l~~~~~~~~~--~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
.-.||++||||++|.+|++..+ .+...+++||++.||+..+-.+++|||.||+.+.||+||.|||||...+++
T Consensus 319 ~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 319 LGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 2369999999999999987544 678899999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCC----CCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhc
Q 003620 374 GVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 449 (807)
Q Consensus 374 ~~P~~~~R~~il~~~~~~~~----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (807)
..||+..|++||++|+++|. +..++|++++|..|.+|+|++++.+++.|...++.+....- .....+....+.+
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~l 476 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENL 476 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhe
Confidence 99999999999999998774 56789999999999999999999999999988887765432 1233455566789
Q ss_pred ccchhhHhhhhccCCCCCccee-----eeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCC
Q 003620 450 AVSNEHFQTALGTSNPSALRET-----VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPP 524 (807)
Q Consensus 450 ~v~~~~~~~al~~~~ps~~~~~-----~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~Gpp 524 (807)
++++.||..|+..++|+..... .+....+.|..-. .+-+. .........++....+-.++||+|||
T Consensus 477 kV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v-----~~il~----~G~llv~qvk~s~~s~lvSvLl~Gp~ 547 (744)
T KOG0741|consen 477 KVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV-----TRILD----DGKLLVQQVKNSERSPLVSVLLEGPP 547 (744)
T ss_pred eecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH-----HHHHh----hHHHHHHHhhccccCcceEEEEecCC
Confidence 9999999999999999764321 1122234553321 11111 00011112222234455679999999
Q ss_pred CCChhHHHHHHHHHhCCeEEEEeCccccccccCCch----HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCch
Q 003620 525 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA 600 (807)
Q Consensus 525 GtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se----~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~ 600 (807)
|+|||+||..+|..+++||+.+-.++-+ +|-+| .+++.+|+.|++++-+||++|+|+.|...-.-+ ..+
T Consensus 548 ~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG----PRf 620 (744)
T KOG0741|consen 548 GSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG----PRF 620 (744)
T ss_pred CCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccC----chh
Confidence 9999999999999999999998777643 45444 369999999999999999999999998764221 246
Q ss_pred HHHHHHHHHhcccCCCC-CCcEEEEecCCCCCCCCc-cccCCCCcceeEEecCCCH-HHHHHHH
Q 003620 601 ADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-DSRHQIF 661 (807)
Q Consensus 601 ~~~v~~~lL~~ld~~~~-~~~vivi~aTn~~~~ld~-allrpgRfd~~i~~~~p~~-~~r~~Il 661 (807)
++.++..|+..|...++ .++.+|++||.+.+.|.. .++. +|+..+++|..+. ++..+++
T Consensus 621 SN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 621 SNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred hHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHH
Confidence 67778888888887665 458999999999888854 5666 9999999997654 4544444
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-60 Score=486.09 Aligned_cols=251 Identities=48% Similarity=0.824 Sum_probs=242.0
Q ss_pred eeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccc
Q 003620 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 551 (807)
..+.|+++++||||+++..+++++.|+.|+++|++|..+|+.||+|+|||||||||||+||||+|++.++.||.+.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCC
Q 003620 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~ 631 (807)
..+|+|+..+.+|++|+.|+..+||||||||||+++.+|-.+..+.+.-..|.+-+||++|||+.+.++|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999988766666778899999999999999999999999999999
Q ss_pred CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 003620 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (807)
Q Consensus 632 ~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~ 711 (807)
.||||||||||||++|+||+||.+.|.+||+.|.+++.+..++||+.||+.++|+|||||+++|.+|.+.|+|+..
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---- 377 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---- 377 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred HHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 712 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
..||++||.+|.+++
T Consensus 378 ----------------------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 ----------------------DEVTMEDFLKAVEKV 392 (406)
T ss_pred ----------------------CeecHHHHHHHHHHH
Confidence 279999999999887
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-56 Score=457.96 Aligned_cols=285 Identities=43% Similarity=0.696 Sum_probs=257.8
Q ss_pred eeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcc
Q 003620 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~ 550 (807)
.+...|+++|+||.|+.++|+.|++.|..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 344568999999999999999999999999999999987 6788999999999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCC----CCcEEEEec
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGA 626 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~----~~~vivi~a 626 (807)
+.++|-|+||+.||-+|+.|+..+|++|||||||+|+.+||.+ +.+.+++|+.++||.+|||+.+ .+.|+|+||
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999986 3467899999999999999864 345999999
Q ss_pred CCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 627 Tn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
||.||.||.|++| ||.+.||+|+||.++|..+++..++..+++.+++++.|++.++||||+||.++|++|++.++|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003620 707 IEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 769 (807)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 769 (807)
+.......... -+.++...+|+++||++|+++++||++..++.+|++|...|++
T Consensus 437 i~g~~~~ei~~---------lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 437 IAGLTPREIRQ---------LAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HhcCCcHHhhh---------hhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 65421110000 0011122469999999999999999999999999999999975
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-50 Score=413.24 Aligned_cols=246 Identities=51% Similarity=0.862 Sum_probs=230.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
+.++++|+||||+++|+++|+|.+++|+.+|++|+.+|+.||+|||||||||||||.|||++|++.++.|+.+.|++++.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHH---HHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+|.|+....+|.+|+.|+.+.||||||||||++..+|......-+ +|.+-+|++.||++..+.+|-||+|||+++.|
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 999999999999999999999999999999999998765432222 45566788999999999999999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||||.||||||+.|+||.|+.+.|.+||++|+++|.+.++++++.++..+.|++|+|+.++|.+|.+.++|..
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~------- 376 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER------- 376 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++++||..|..++
T Consensus 377 ----------R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 377 ----------RDEVTMEDFLKAVEKV 392 (406)
T ss_pred ----------cCeecHHHHHHHHHHH
Confidence 3457889999887655
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-51 Score=407.58 Aligned_cols=294 Identities=35% Similarity=0.644 Sum_probs=259.2
Q ss_pred eeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcc
Q 003620 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~ 550 (807)
.+.+.|++.|+|+.|++..|+.|++.|..|++.|++|.. +..|.+|+||||||||||+.||||+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456789999999999999999999999999999999987 7788999999999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCC-CCcEEEEecCCC
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNR 629 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~-~~~vivi~aTn~ 629 (807)
|+++|.|++|+.++.+|+.||++.|+||||||||++++.|+.. .+.+.+|+..+||.+|.|+.. .++|+|+||||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999988764 355889999999999999864 679999999999
Q ss_pred CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHH
Q 003620 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~ 708 (807)
||.||.|+.| ||++.||+|+|+..+|..+|+.++...|.. ...|+.+|+++|+||||+||.-++++|.+..+|....
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 999999999999999999999999887633 5679999999999999999999999999999998766
Q ss_pred HHHHHHHhhcCC---------------Cccc-----cccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003620 709 KDIERERRRRDN---------------PEAM-----DEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 768 (807)
Q Consensus 709 ~~~~~~~~~~~~---------------~~~~-----~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 768 (807)
...-.......+ ..++ +-..+....+.||+.||.+++..++|+++++++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 544322221100 0111 11112233578999999999999999999999999999999997
Q ss_pred cc
Q 003620 769 QS 770 (807)
Q Consensus 769 ~~ 770 (807)
+.
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 64
No 12
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-49 Score=431.30 Aligned_cols=365 Identities=39% Similarity=0.641 Sum_probs=292.0
Q ss_pred HHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCCCCCeEEE--cH-hHHhhcCCCCCCeEEEEecCCCCCCceEEecccc
Q 003620 49 DTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRM--NK-VVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPID 125 (807)
Q Consensus 49 ~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~--~~-~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~ 125 (807)
..|+.++ ..+-+|.|...++..++-.+... +..+..|.+ ++ ..|. |.+++.. ..++....+.+..+.
T Consensus 310 tL~dg~~-~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~Rl-------dIl~~l~-k~~~~~~~~~l~~iA 379 (693)
T KOG0730|consen 310 TLLDGLK-PDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRL-------DILRVLT-KKMNLLSDVDLEDIA 379 (693)
T ss_pred HHHhhCc-CcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHH-------HHHHHHH-HhcCCcchhhHHHHH
Confidence 3555555 55777777777766666554443 445555544 22 2222 2222222 223333445555555
Q ss_pred ccccCcchhhHHHHHHHHhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEeCCCceEEecCCCCcccccccCCCC
Q 003620 126 DTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEV 205 (807)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~ 205 (807)
...+++.+..+...++..-..+.|- .+..+.+....+.|... ++.....+++
T Consensus 380 ~~thGyvGaDL~~l~~ea~~~~~r~-----------~~~~~~~A~~~i~psa~-----------------Re~~ve~p~v 431 (693)
T KOG0730|consen 380 VSTHGYVGADLAALCREASLQATRR-----------TLEIFQEALMGIRPSAL-----------------REILVEMPNV 431 (693)
T ss_pred HHccchhHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHhcCCchhh-----------------hheeccCCCC
Confidence 5667888777776666555433221 00000000111222211 1112346889
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhch
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (807)
+|+||||+++.+.+|++.|.+|++||+.|.++|+.|++|||||||||||||++||++|++.+.+|+.|.|++++++|+|+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccC
Q 003620 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFG 365 (807)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~ 365 (807)
++..++.+|+.|+...|||||+||||+++..|+...+++..|++++|++.||++....+|+|||+||+|+.||+++.|||
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 99999999999999999999999999999999877778999999999999999999999999999999999999999999
Q ss_pred ccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhh
Q 003620 366 RFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEI 445 (807)
Q Consensus 366 rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 445 (807)
|||+.|++|+|+.+.|++||+.+++++++.++++++.++..|+||+|+|+..+|++|+..++++...
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------- 658 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------------- 658 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhhcccchhhHhhhhccCCCC
Q 003620 446 LNSMAVSNEHFQTALGTSNPS 466 (807)
Q Consensus 446 ~~~~~v~~~~~~~al~~~~ps 466 (807)
...++.+||..+++..+++
T Consensus 659 --a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 --ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred --cccccHHHHHHHHHhhccc
Confidence 4557889999999887665
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=379.89 Aligned_cols=252 Identities=42% Similarity=0.747 Sum_probs=239.9
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
.+|+-+++-+||++...+.+++.++.|.+||++|+.+|+..|+|+|||||||||||.||+++|....+.||.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
+|+|+..+.+|++|-.||..+|+|||.||||++.+.|..+....++...|.+-+||++|||++..+++-||.||||.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999998776666667788899999999999999999999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
|||++||||+|+.|+||+|++++|.+||+.+.+++.+...+++..+|+...|.|||+++.+|.+|.++|+|+..
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr------ 373 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR------ 373 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 751 (807)
..+|++||+-|..++-..
T Consensus 374 --------------------vhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 374 --------------------VHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred --------------------ccccHHHHHHHHHHHHhc
Confidence 379999999999887443
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6.9e-46 Score=416.52 Aligned_cols=399 Identities=25% Similarity=0.400 Sum_probs=307.0
Q ss_pred CCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHH
Q 003620 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (807)
Q Consensus 301 ~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~ 380 (807)
.|+++++.|+|.++.+ . .++..|.++....+...+.+|+.+.+ ..+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~----~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----I----SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc-----h----HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 4789999999988732 1 12333333333333444445544432 457788875 55678999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhh
Q 003620 381 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTA 459 (807)
Q Consensus 381 R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~a 459 (807)
..++++........ .++..++.+++.+.|++..++..++..+.... .. +.. +.... + .+.-...
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~--~~---~~~-------~~~~~--i-~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY--KT---IDE-------NSIPL--I-LEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CC---CCh-------hhHHH--H-HHHHHHH
Confidence 99999877654332 34557889999999999999988877643210 00 000 00000 0 0000011
Q ss_pred hccCCCCCcceeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh
Q 003620 460 LGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 460 l~~~~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~ 539 (807)
+.. ...-+ ...+.++|++|||++.+|+.+.+.... ......++|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~le--~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEILE--FYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hcccc--ccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 111 00001 112467899999999999999875432 2334567799999999999999999999999999999
Q ss_pred CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 003620 540 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 619 (807)
Q Consensus 540 ~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~ 619 (807)
+.+|+.++++.+.++|+|+++++++.+|+.|+...||||||||||.++..++.. ..++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2245788999999999985 356
Q ss_pred cEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC--ccccHHHHHHHcCCCCHHhHHHHHHH
Q 003620 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS--KDVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 620 ~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~--~~~dl~~la~~t~g~sgadi~~l~~~ 697 (807)
+|+||||||+++.|||+++||||||+++++++|+.++|.+||+.++++.... .+.|+..+|+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999886432 47889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHH
Q 003620 698 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS--VSDADIRKYQAFAQTL 767 (807)
Q Consensus 698 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s--~~~~~~~~y~~~~~~~ 767 (807)
|+..|..+. ..++.+||..|++.+.|+ +..++|+.+++|....
T Consensus 440 A~~~A~~~~---------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 440 AMYIAFYEK---------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHcC---------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 998887542 258999999999999997 6888999999998753
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-48 Score=413.06 Aligned_cols=243 Identities=40% Similarity=0.709 Sum_probs=230.5
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
.+++|+|+-|+++.|++|++.+.+ ++.|..|.++|-+.|+|+||+||||||||+||+|+|++.+.||+...|+++-.+|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478999999999999999999986 7889999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCc
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~ 635 (807)
||...+.||.+|+.|++.+||||||||||++.++|.... ....+..+||||.+|||+..+.+||||||||+|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999997752 22788999999999999999999999999999999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (807)
Q Consensus 636 allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~ 715 (807)
||+||||||++|.+|.||...|.+||+.++++.+++.++|+..||+-|.|||||||.|+++.|+..|..++.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga-------- 526 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA-------- 526 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
..|+|.|++-|-..+
T Consensus 527 ------------------~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 527 ------------------EMVTMKHLEFAKDRI 541 (752)
T ss_pred ------------------ccccHHHHhhhhhhe
Confidence 368999999987765
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-47 Score=411.67 Aligned_cols=273 Identities=43% Similarity=0.757 Sum_probs=249.8
Q ss_pred cccccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEe
Q 003620 195 KREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN 274 (807)
Q Consensus 195 ~~~~~~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~ 274 (807)
.++....+++++|+||||+++...+|...|.+|.++|++|+.+|+..|.|||||||||||||.||+++|++.+.+|+.|.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 34455578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 003620 275 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 354 (807)
|++++++|+|+++..+|.+|+.|+.+.|||||+||+|+|++.|+........|+++||+..||++..+.+|.|||+||+|
T Consensus 578 GPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 578 GPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhc--CCCCCCchhhhHHhhhcC--CCcHHHHHHHHHHHHHHHHHhh
Q 003620 355 NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREK 430 (807)
Q Consensus 355 ~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~--~~~~~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~ 430 (807)
+-+||++.|||||++.++++.|+.++|.+||+.+++ +.++..+++++.++..+. ||+|+||.+||++|++.+++..
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 778899999999999877 9999999999999999999987
Q ss_pred ccccccccchhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 431 MDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
+..++.......... ....++..||..|++.+.|+..
T Consensus 738 ~~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred HhhccccCcccceee-eeeeecHHHHHHHHHhcCCCcc
Confidence 664443332221111 1446788899999999988753
No 17
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-48 Score=375.22 Aligned_cols=252 Identities=44% Similarity=0.752 Sum_probs=238.8
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+.|++++.||||++-.|+++++.++.|+.+.+++++.|+.||+|+|+|||||||||+|+||+|+...+.||.|.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
+|.|+..+.+|.+|..|+..+|+||||||||+++.+|-....+.+....|++-+||++|||+....+|-||+||||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999997665556667889999999999999999999999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
|||++||||+|+.|+||+||..+++-+|.....++.+++++|++.+..+.+..|||||.++|++|.+.|++++.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr------ 381 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR------ 381 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc-CCC
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA-RRS 751 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~-~~s 751 (807)
..|...||+++.+.. +++
T Consensus 382 --------------------yvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 382 --------------------YVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred --------------------eeeeHHHHHHHHHhhcCCc
Confidence 268899999998764 444
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-46 Score=367.95 Aligned_cols=266 Identities=38% Similarity=0.711 Sum_probs=245.0
Q ss_pred CCCCcceeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE
Q 003620 464 NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (807)
Q Consensus 464 ~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~ 543 (807)
.|+..--...+.|++++.|+||..+..+.|++.++.|+.+|+.|.++|+.||+|+|+|||||||||++|+|+|+..++.|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34443334567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEE
Q 003620 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 544 i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~viv 623 (807)
|.|-+++|..+|+|+..+.+|++|+.|+....|||||||||++.+.|-....+.+....|.+-+|+++|||+.+..++-|
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999988655444455677888889999999999999999
Q ss_pred EecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 624 i~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
+.|||||+.|||||+||||+|+.++|.+||.+.|.+||+.|.+.+.+..++.++.||..+.+-+||+|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003620 704 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAF 763 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~ 763 (807)
+...+ ..|..||.+|..++ ++-|.+|
T Consensus 400 rarrk--------------------------~atekdfl~av~kv--------vkgy~kf 425 (435)
T KOG0729|consen 400 RARRK--------------------------VATEKDFLDAVNKV--------VKGYAKF 425 (435)
T ss_pred HHHhh--------------------------hhhHHHHHHHHHHH--------HHHHHhc
Confidence 97633 57899999999887 6666654
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-47 Score=375.33 Aligned_cols=250 Identities=40% Similarity=0.721 Sum_probs=235.8
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 552 (807)
...|.-++.||||+++..+++++.++.|+.||+.+..+|++||+|++|||+||||||.||||+|+...+.|+.+-+++|+
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC
Q 003620 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (807)
Q Consensus 553 ~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ 632 (807)
.+|.|+..+.+|++|+.|...+|+|+||||||++..+|=.+.+.......|.+-+||++|||+.....|-||.|||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999998665444445567777899999999999999999999999999
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003620 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 633 ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~ 712 (807)
|||||+||||+|+.|.||.||...+++||..|..++.+..+++++.+...-+.+|||||+++|.+|.+.|+|+...
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm---- 412 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM---- 412 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh----
Confidence 9999999999999999999999999999999999999999999999999889999999999999999999998633
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
.|+++||.+|.+++
T Consensus 413 ----------------------~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 413 ----------------------KVTMEDFKKAKEKV 426 (440)
T ss_pred ----------------------hccHHHHHHHHHHH
Confidence 68999999998876
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-46 Score=367.34 Aligned_cols=249 Identities=42% Similarity=0.729 Sum_probs=236.9
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+.|...++||||++...++|.+.+..|+.|++.|.++|++||+|+|+|||||||||++|+|.|...+..|+.+-++.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
+|+|+..+.+|..|..|+..+|+||||||+|++..+|-.+....+....|.+-+||++|||+.+...|-||+||||.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997765555566778888999999999999999999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
|||++|.||+|+.|+||.|+++.|..|++.|.+++.+..++++++||+-|++|+||..+++|-+|.+.|+|+..
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a------ 397 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA------ 397 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
..|+.+||.+++..+
T Consensus 398 --------------------tev~heDfmegI~eV 412 (424)
T KOG0652|consen 398 --------------------TEVTHEDFMEGILEV 412 (424)
T ss_pred --------------------ccccHHHHHHHHHHH
Confidence 369999999998776
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=379.26 Aligned_cols=285 Identities=38% Similarity=0.635 Sum_probs=244.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcc-cCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
.++|+||||++.+++.|++.|.+|+.+++.|...+ +++++|+|||||||||||++|+|+|++.+++|+.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 68999999999999999999999999999997544 57889999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCC--cEEEEecCCCCCCC
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDII 633 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~--~vivi~aTn~~~~l 633 (807)
+|++++.++.+|..|....||||||||+|++++.|+.+. ..+...+.++|+...||+..+. +|+|+||||||..|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~d---HEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTD---HEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccch---HHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 999999999999999999999999999999999995432 4578889999999999997654 59999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHH---
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD--- 710 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~--- 710 (807)
|.|++| |+.+.++++.|+.++|.+||+..+++..+..++|+.++|.+|+||||+||.++|+.|+...+++.+...
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHH--HHHHHHHHHH
Q 003620 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADI--RKYQAFAQTL 767 (807)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~--~~y~~~~~~~ 767 (807)
.+......+. .........-...+++++||.++...+-++++.+.. ...+.|.+.+
T Consensus 323 ~d~d~~~~d~-~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~ 380 (386)
T KOG0737|consen 323 LDLDKAIADL-KPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELY 380 (386)
T ss_pred hhhhhhhhhc-cCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhh
Confidence 0000000000 000000111124689999999999988888655443 3455666655
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-44 Score=409.37 Aligned_cols=246 Identities=45% Similarity=0.794 Sum_probs=230.3
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
..+.|.|+.|++++|++|.|.|.+ +++|+.|.++|.++|+|+||+||||||||+||||+|+|.+.||++++++++..++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccC-CCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCC
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~-~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld 634 (807)
+|.....++.+|..|+..+|||+|+||||++...|+ ...+..+......+||||.+|||+.....|+|+|+||||+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2233345567889999999999999999999999999999999
Q ss_pred ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 635 ~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
+|++||||||+.|++++|+...|.+||+.|+++.+++ +++|+..+|.+|.||+||||.++|++|+..|.++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~------ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL------ 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999885 889999999999999999999999999999999863
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
..|+..||+.|++.+
T Consensus 539 --------------------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 --------------------REIGTKDLEYAIERV 553 (774)
T ss_pred --------------------CccchhhHHHHHHHH
Confidence 269999999999854
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.9e-44 Score=392.86 Aligned_cols=253 Identities=44% Similarity=0.737 Sum_probs=235.4
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 552 (807)
.+.|+++|+||||++.+|+.+++.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC
Q 003620 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (807)
Q Consensus 553 ~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ 632 (807)
.+|+|++++.++.+|..|+...||||||||||.++..|.......+....+++.+||++||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887543333334567889999999999988889999999999999
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003620 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 633 ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~ 712 (807)
||||++||||||..|+|++|+.++|..||+.+++++++..++|+..++..|+||||+||.++|++|++.|+++..
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~----- 371 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR----- 371 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 003620 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (807)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 751 (807)
..|+++||++|+..+...
T Consensus 372 ---------------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 372 ---------------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------------------CccCHHHHHHHHHHHHhc
Confidence 269999999999987554
No 24
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-43 Score=389.68 Aligned_cols=268 Identities=44% Similarity=0.744 Sum_probs=242.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
++++++.|+||||+++.|..|.+.|.+|++||++|.+ |+.+..|||||||||||||.+|+++|.++...|+.|.|+++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4689999999999999999999999999999999965 889999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCC--CchhHHHHHHHHHHHHhhccc--CCceEEEEEecCCCC
Q 003620 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK--THGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPN 355 (807)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~--~~~~~~~~v~~~Ll~~ld~~~--~~~~viVI~atn~~~ 355 (807)
+.|+|++|+++|.+|+.|+...|||||+||+|+++|+|+. +++.+..|+++||+..||++. ....|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999975 456788999999999999998 456899999999999
Q ss_pred CCCHHhhccCccceEEEeCCCC-hHHHHHHHHHHhcCCCCCCchhhhHHhhhcC-CCcHHHHHHHHHHHHHHHHHhhccc
Q 003620 356 SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMDV 433 (807)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~P~-~~~R~~il~~~~~~~~~~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (807)
.|||+|.||||||+-+++++++ .+.+..+|+..++++.+.+++++.++|+.++ .|+|+|+-++|..|.+.++++....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 5668899999999999999999999999875 7999999999999999999988765
Q ss_pred cccccchhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 434 IDLEDETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 434 ~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
++.-..........++.++++||.++.++..|+-.
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 44332222222335678999999999999988743
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-43 Score=392.60 Aligned_cols=291 Identities=39% Similarity=0.719 Sum_probs=251.7
Q ss_pred ccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccc
Q 003620 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~ 554 (807)
...++|.|+.|.+++|+++.+.|.+ ++.|..|..+|...|+|+||+||||||||+|||++|++.+.||++++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3578999999999999999999875 788899999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCC
Q 003620 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld 634 (807)
|||-....+|.+|.+|++++|||+||||||++...|+.+.+.........+||+|.+|||+..+..|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987655544556679999999999999889999999999999999
Q ss_pred ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~ 714 (807)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||+|||+.+++++|+..|.+++.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~------- 375 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK------- 375 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred HhhcCCCccccccccccccccccHHHHHHHHhhc-----CC--CCCHHH--HHHHHHH----HHHHhcccCCCccccccc
Q 003620 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA-----RR--SVSDAD--IRKYQAF----AQTLQQSRGIGSEFRFAE 781 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~-----~~--s~~~~~--~~~y~~~----~~~~~~~~~~~~~~~~~~ 781 (807)
..|++.||.+|...+ ++ .+++++ +-.|.+= ...+-+..+.. ...+-
T Consensus 376 -------------------~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v--~KvtI 434 (596)
T COG0465 376 -------------------KEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPV--HKVTI 434 (596)
T ss_pred -------------------eeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCccc--ceeee
Confidence 269999999999876 22 366543 2334332 22222222111 44455
Q ss_pred cCCCCcCCCCCCC
Q 003620 782 AGTGATTGADPFS 794 (807)
Q Consensus 782 ~~~~~~~~~~~~~ 794 (807)
.++|..-|.+.|.
T Consensus 435 iPrG~alG~t~~~ 447 (596)
T COG0465 435 IPRGRALGYTLFL 447 (596)
T ss_pred ccCchhhcchhcC
Confidence 5777555555444
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.5e-42 Score=378.36 Aligned_cols=259 Identities=48% Similarity=0.809 Sum_probs=239.2
Q ss_pred eeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcc
Q 003620 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~ 550 (807)
...+.|++.|++|+|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~ 630 (807)
+.++|+|++++.++.+|+.|+...||||||||||.+++.|+...........+.+.++|.+++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998886543333344567888999999998888899999999999
Q ss_pred CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 710 (807)
Q Consensus 631 ~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~ 710 (807)
+.||++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999999874
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHH
Q 003620 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDA 755 (807)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~ 755 (807)
...|+.+||.+|+..++++-..+
T Consensus 357 ----------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ----------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12699999999999998876543
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=338.69 Aligned_cols=243 Identities=39% Similarity=0.707 Sum_probs=217.7
Q ss_pred ccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccc
Q 003620 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~ 554 (807)
.++++++|++|+++.|+..+-.+.| +.+|+.|.. -.|+++|||||||||||++||++|++.+.+|+.+++.++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 4689999999999999988766655 566776655 457889999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCC
Q 003620 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld 634 (807)
|||+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+...+++|.||++|||+..+.+|+.|||||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999877653 224557789999999999999999999999999999999
Q ss_pred ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHH-HHHHHHHHHHHHHHHHHHHH
Q 003620 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 635 ~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~-l~~~A~~~a~~~~~~~~~~~ 713 (807)
||+.+ ||..-|+|.+|+.++|.+|++.+++++|+.-+.++..+++.|.||||+||.. +++.|...|+.+..+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e----- 341 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE----- 341 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh-----
Confidence 99988 9999999999999999999999999999999999999999999999999986 666676677766532
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 751 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 751 (807)
.|+.+|++.|+++-+++
T Consensus 342 ---------------------~v~~edie~al~k~r~~ 358 (368)
T COG1223 342 ---------------------KVEREDIEKALKKERKR 358 (368)
T ss_pred ---------------------hhhHHHHHHHHHhhccc
Confidence 68999999999976554
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=374.41 Aligned_cols=249 Identities=41% Similarity=0.726 Sum_probs=232.3
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+.|.++|+||+|++..++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
+|+|++++.++.+|+.|+...||||||||||.++.+|.......+....+.+.++|++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998876543333344567888999999998877889999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
|++++||||||+.|+|++||.++|.+||+.+++++.+..++|+..++..++||||+||+++|++|++.|+++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
..|+.+||.+|+.++
T Consensus 410 --------------------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 --------------------MKVTQADFRKAKEKV 424 (438)
T ss_pred --------------------CccCHHHHHHHHHHH
Confidence 269999999999886
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-42 Score=363.26 Aligned_cols=277 Identities=38% Similarity=0.652 Sum_probs=236.3
Q ss_pred ecccccccc--ccchhhHH-HhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC-eEEEEeCc
Q 003620 474 EVPNVSWED--IGGLENVK-RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGP 549 (807)
Q Consensus 474 ~~~~~~~~~--i~g~~~vk-~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~-~~i~v~~~ 549 (807)
-.|+..|++ |||++.-- +-.+++.....-.|+..+++|+..-+|+|||||||||||++|+.+...+++ .--.|+||
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346666766 67887543 334556666666788999999999999999999999999999999999975 23458999
Q ss_pred cccccccCCchHHHHHHHHHHhc--------CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcE
Q 003620 550 ELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 621 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~~f~~a~~--------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v 621 (807)
+++++|||+||.++|.+|..|.+ +.--||+|||||+++.+||+..++ .++++.|+||||.-|||++...++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998864 234699999999999999987544 689999999999999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC----CCCccccHHHHHHHcCCCCHHhHHHHHHH
Q 003620 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 622 ivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~----~~~~~~dl~~la~~t~g~sgadi~~l~~~ 697 (807)
+|||-|||++.||.||||||||...+++.+||++.|.+||+.|.+++ .++.++|+.+||..|.+||||+|+.+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999776 57789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHH
Q 003620 698 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS--VSDADIRKYQA 762 (807)
Q Consensus 698 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s--~~~~~~~~y~~ 762 (807)
|...|+.+.++.... ..++ ....+...|+++||..|+.+++|. ++++++..|..
T Consensus 451 A~S~A~nR~vk~~~~---------~~~~--~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGK---------VEVD--PVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcc---------eecC--chhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 999999998764310 0111 112234579999999999999996 78899887763
No 30
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-40 Score=340.51 Aligned_cols=264 Identities=41% Similarity=0.674 Sum_probs=235.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.-+.+.|+||.|+.++++-|+|.+.+|+..|++|+.+ ..|-++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 3367899999999999999999999999999999874 578899999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCch-hHHHHHHHHHHHHhhcccCC----ceEEEEEecCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG-EVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPN 355 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~-~~~~~v~~~Ll~~ld~~~~~----~~viVI~atn~~~ 355 (807)
+|.|++++.+|.+|+.|+...|++|||||||+|+.+|+.... +..+|+.+.|+-+||++... ..|+|+++||-||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 999999999999999999999999999999999999986543 56789999999999998653 2488999999999
Q ss_pred CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccc
Q 003620 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435 (807)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 435 (807)
+||.+++| ||.+.|++|.|+.+.|..+++..++..++.++++++.++..++||+|+||..+|++|++..+|+......
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred cccc-hhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 436 LEDE-TIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 436 ~~~~-~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
-.+. ....+.. ...++..||+.|+..++|+..
T Consensus 442 ~~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 442 PREIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 2221 1122222 256899999999999998854
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-41 Score=362.06 Aligned_cols=278 Identities=38% Similarity=0.658 Sum_probs=248.2
Q ss_pred eeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccc
Q 003620 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l 551 (807)
....+++.|+|++|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++|+|.|+++.|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 344567999999999999999999999999999999873 4566799999999999999999999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--CCCcEEEEecCCC
Q 003620 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNR 629 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~vivi~aTn~ 629 (807)
.++|+|++|+.++.+|+-|+...|+|+|+||||+++..|... .....+|+..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999999443 35578899999999999875 3569999999999
Q ss_pred CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHH
Q 003620 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~ 708 (807)
||.+|.|++| ||.+++|+|+|+.++|..+|+..+.+.+.. .+.|+..+++.|+||||+||.++|++|++.-+++...
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999887433 4578999999999999999999999999988887643
Q ss_pred H-HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003620 709 K-DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 769 (807)
Q Consensus 709 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 769 (807)
. .+ +....+..+.++..||..+++.++|+++...+++|++|...|+.
T Consensus 378 ~~~~--------------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 378 TTDL--------------EFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred chhh--------------hhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 2 11 01122345789999999999999999999999999999999965
No 32
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-40 Score=319.86 Aligned_cols=246 Identities=42% Similarity=0.774 Sum_probs=226.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
++++-+|+-+||+++++++|+|.+++|.+||++|+++|+..|+|+|||||||||||.||+++|....+.|+.++|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhH---HHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~---~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+|.|+....++.+|-.|+.+.|+|||+||||++...+...++.- -+|..-.|++.+|++....++-||.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999998775433222 234445577888999999999999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.|+||+|+.|+||+|+++.|.+||++|.+++.+....++..+|....|-+|+++..+|.+|.+.+++.+
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++.+||+-|...+
T Consensus 373 ----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ----------hccccHHHHHHHHHHH
Confidence 4568889998876554
No 33
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=317.34 Aligned_cols=273 Identities=39% Similarity=0.705 Sum_probs=236.4
Q ss_pred cCCceEEeCCCceEEecCCCCc---cc---ccccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEE
Q 003620 174 DPGEYCVVAPDTEIFCEGEPIK---RE---DEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (807)
Q Consensus 174 ~~~~~~~~~~~t~i~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL 247 (807)
.|.+.+-+..++.+.++.-|.. +. ..+.-+.-.|+||||+++++++|.+.+.+|+.|++.|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 3566666777777765543321 11 11233556899999999999999999999999999999999999999999
Q ss_pred EcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHH--
Q 003620 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE-- 325 (807)
Q Consensus 248 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~-- 325 (807)
|||||||||.+||+.|...+..|+.+-|+++...|.|+..+.++..|..|+...|+||||||+|++..++-.....-+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754322222
Q ss_pred -HHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHh
Q 003620 326 -RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIA 404 (807)
Q Consensus 326 -~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la 404 (807)
.|..-.|++.+|++.+...|-||++||+.+-+||+|.|.||+++.|+||.|+++.|.+|+++|.+++.+.+++++++++
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 2344457788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccC
Q 003620 405 KDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 405 ~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
+.|.+|.|+...++|-+|.+.++|+.. ..++.+||...+.++
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDfmegI~eV 412 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDFMEGILEV 412 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHHHHHHHHH
Confidence 999999999999999999999998753 335667776655443
No 34
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-40 Score=332.99 Aligned_cols=247 Identities=41% Similarity=0.721 Sum_probs=228.9
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
.+++|+.++|+..+...+++.++.|+..+++|.++|+++|+|++||||||+|||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCc
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~ 635 (807)
.||+.+.||+.|..|+...|||||+||||++.++|-...........+.+-.||++|||+....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999998544333444566777888999999999999999999999999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (807)
Q Consensus 636 allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~ 715 (807)
+|+||||+|+.+.+|+|+...|..|++.+.........+|.+.+.+..+||+|+|+++.|++|.+.|+++...
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~------- 359 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERD------- 359 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhH-------
Confidence 9999999999999999999999999999998887778889999999999999999999999999999987532
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
.+-++||.++..+.
T Consensus 360 -------------------~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 360 -------------------EVLHEDFMKLVRKQ 373 (388)
T ss_pred -------------------HHhHHHHHHHHHHH
Confidence 46689999888765
No 35
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-39 Score=314.22 Aligned_cols=246 Identities=46% Similarity=0.743 Sum_probs=225.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.-++++|.||||++-+++++++.+++|+.|.++++.+|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchh---HHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+|.|+....++.+|..|+.+.|+||||||+|+++.++-..... --.|++-.|++.||++....+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999887543322 2346777888999999999999999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.||||+++.|+||.|+..++.-++...+.++.+.++++++.+..+-...+++|+.++|++|.+.+.+..
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...+...||+++.+..
T Consensus 381 ----------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------ceeeeHHHHHHHHHhh
Confidence 2345666777766543
No 36
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-39 Score=342.68 Aligned_cols=228 Identities=44% Similarity=0.742 Sum_probs=218.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
...+++|+|+-|+++++++|.|+++. |+.|+.|.+||-+-|+||||+||||||||+|||++|++.+.+|+...|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHH
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~a 360 (807)
.++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..||++.++.+|+|||+||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999987766667788899999999999999999999999999999999
Q ss_pred hhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHh
Q 003620 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 361 l~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
|.||||||++|.+|.||...|.+||+.|+.++++..++|+..+|+-|.||+|+|++.++..|++.+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999877543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-39 Score=372.20 Aligned_cols=387 Identities=38% Similarity=0.601 Sum_probs=305.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEechh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 277 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~~~ 277 (807)
..++|++|||++..+.+|+|++.+|+.||++|.++++.||+|||++||||||||..|+++|..+. ..|+.-.|++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 35799999999999999999999999999999999999999999999999999999999998874 3467778899
Q ss_pred hhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
..++|+|+.+.+++.+|++|+..+|+|+|+||||-|+|.+......+...++..|+.+|+++..++.|+||||||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (807)
||++||+|||+++++++.|+.+.|.+|+..|.++..-. ...-+..++..+.||.|+|+.+||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998876532 23457889999999999999999999999999987766554
Q ss_pred ccchhhhhhhhhcccchhhHhhhhccCCCCCcceeeeeccccc-c-ccccchhhHHHhhHh-------------hhcCCC
Q 003620 437 EDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVS-W-EDIGGLENVKRELQE-------------TVQYPV 501 (807)
Q Consensus 437 ~~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~~~~~~~~~~~~-~-~~i~g~~~vk~~l~~-------------~v~~~~ 501 (807)
........ ...+.+...+|..|+....|+..++.......+. . .-+.+.......++. ...+-.
T Consensus 500 s~~kl~~d-~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLID-VALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred cccccccc-chhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 44333221 2344588899999999888887765332221111 0 001111111111111 111100
Q ss_pred CchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh-CCeEEEEeCccccccc-cCCchHHHHHHHHHHhcCCCeEEE
Q 003620 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 579 (807)
Q Consensus 502 ~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~-~~~~i~v~~~~l~~~~-vg~se~~i~~~f~~a~~~~p~ilf 579 (807)
+..+..-...+-....+++.|..|.|-+.+..|+-+.+ +.+..+...+.+++.- ....+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000000111112338899999999999999998776 4555555555555443 556788999999999999999999
Q ss_pred Eeccchhhhcc
Q 003620 580 FDELDSIATQR 590 (807)
Q Consensus 580 iDEid~l~~~r 590 (807)
|-.+|......
T Consensus 659 ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 659 IPNVDEWARVI 669 (1080)
T ss_pred ccchhhhhhcC
Confidence 99999987643
No 38
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.6e-39 Score=367.93 Aligned_cols=249 Identities=43% Similarity=0.805 Sum_probs=228.8
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+.+.++|+|++|++++|+++.+.+.+ +.+++.+.++|..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45789999999999999999998886 78888999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l 633 (807)
.|+|.+++.++.+|+.|+...||||||||||.+...|+...........+++++||.+||++.+..+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998886542222344678999999999999888899999999999999
Q ss_pred CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 634 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
||+++||||||+.|++++|+.++|.+||+.++++.++..++++..+|..+.||||+||.++|++|+..|.+++
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999998887654
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcC
Q 003620 714 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 749 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~ 749 (807)
...|+.+||+.|++.+.
T Consensus 280 -------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 -------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred -------------------CCCCCHHHHHHHHHHHh
Confidence 12699999999999764
No 39
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=323.02 Aligned_cols=246 Identities=46% Similarity=0.776 Sum_probs=225.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
+.+.-+|.||||++.++++|+|.+++|+.||++++..|+.||+||+|||+||||||.||+++|+...+.|+.+-|++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHH---HHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+|.|+..+.+|++|+.|..+.|+|+||||||++..++....+.-++.+. -.|++.+|++.++..|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 9999999999999999999999999999999999988665544444333 3567778889999999999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.||||+|+.|+|+.||+..+..|+.+|+.++.+..+++++.+...-..++|+|+.++|.+|.+.++|.+
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
.+.++.+||.++.+.+
T Consensus 411 ----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------HhhccHHHHHHHHHHH
Confidence 3567888888876544
No 40
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.4e-38 Score=356.45 Aligned_cols=251 Identities=43% Similarity=0.773 Sum_probs=215.9
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC----------e
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 542 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~----------~ 542 (807)
.+.|+++|++|+|++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456889999999999999999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCC
Q 003620 543 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 618 (807)
Q Consensus 543 ~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~ 618 (807)
|+.+++++++++|+|++++.++.+|+.|+.. .||||||||+|+++..|+... .+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998864 699999999999999886532 2334578899999999999888
Q ss_pred CcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc-CCCCc---------cccHHHHHH-------
Q 003620 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-SPVSK---------DVDLRALAK------- 681 (807)
Q Consensus 619 ~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~-~~~~~---------~~dl~~la~------- 681 (807)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 35521 112222222
Q ss_pred ----------------------HcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHH
Q 003620 682 ----------------------YTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAA 739 (807)
Q Consensus 682 ----------------------~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 739 (807)
.++.+|||+|+++|.+|...|+++.+... ...|+++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~----------------------~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG----------------------QVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC----------------------CcCcCHH
Confidence 25668999999999999999998876421 2379999
Q ss_pred HHHHHHhh
Q 003620 740 HFEESMKF 747 (807)
Q Consensus 740 ~~~~a~~~ 747 (807)
|+..|+..
T Consensus 470 ~l~~a~~~ 477 (512)
T TIGR03689 470 HLLAAVLD 477 (512)
T ss_pred HHHHHHHH
Confidence 99999864
No 41
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=347.15 Aligned_cols=229 Identities=42% Similarity=0.726 Sum_probs=221.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhh
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 283 (807)
.+.|+||||+.++++.+.+.+.+|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..|+.|.|+++.++|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhc
Q 003620 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363 (807)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r 363 (807)
|.+++.+|.+|..|+...|||||+||+|+++|+|+..+..+..|+++||++.||+...-.+|.|+|+|.+|+.|||+|.|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 003620 364 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 364 ~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
|||+|+.++.+.|++.+|++||+.+........++|++.+|..|.||+|+|+..++-.|-+.++++...
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998887776543
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=306.11 Aligned_cols=303 Identities=34% Similarity=0.586 Sum_probs=255.7
Q ss_pred hhhHHHHHHHHhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEeCCCceEEecCCCCcccccccCCCCCcccccC
Q 003620 133 GNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGG 212 (807)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~i~G 212 (807)
.+.|..|-++.|.+ ..++.|+.+.-.+......|+|+++.|.+.+++++.|.+.... +.. ...+..++++++|+.|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~-~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLET-PRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEecC-cch-hhhhhhccccHhhhhc
Confidence 35778888888864 5689999877666556778999999999988877666554432 211 1123568899999999
Q ss_pred hHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHH
Q 003620 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRK 292 (807)
Q Consensus 213 ~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~ 292 (807)
+++++++.+-++.. |..|+.|..+ .|++||+|||||||||++|+++|++...+++.++..++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999998877766 7889888775 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEccchhccCCCCCC--chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceE
Q 003620 293 AFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDRE 370 (807)
Q Consensus 293 vf~~a~~~~p~Il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~ 370 (807)
+++.|....|||+||||+|+++-++.-. .+++ ..+++.|++.||++..+.+|+.|++||+|+.+|+++++ ||..+
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDV-sEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeE 278 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDV-SEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEE 278 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH-HHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhe
Confidence 9999999999999999999998776432 2233 46889999999999999999999999999999999998 99999
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHH-HHHHHHHHHHhhccccccccchhhhhhhhhc
Q 003620 371 IDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAAL-CTEAALQCIREKMDVIDLEDETIDAEILNSM 449 (807)
Q Consensus 371 i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (807)
|+|..|+.++|.+|++.+.+.++++-+.+++.++..|.|++|+|+..- ++.|..+++... .-
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e 341 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------RE 341 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hh
Confidence 999999999999999999999999999999999999999999999754 455555565432 23
Q ss_pred ccchhhHhhhhccC
Q 003620 450 AVSNEHFQTALGTS 463 (807)
Q Consensus 450 ~v~~~~~~~al~~~ 463 (807)
.++.+|++.++.+.
T Consensus 342 ~v~~edie~al~k~ 355 (368)
T COG1223 342 KVEREDIEKALKKE 355 (368)
T ss_pred hhhHHHHHHHHHhh
Confidence 46778888888754
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.6e-38 Score=347.87 Aligned_cols=250 Identities=50% Similarity=0.836 Sum_probs=230.6
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~ 552 (807)
.+.|.+.|++++|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC
Q 003620 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (807)
Q Consensus 553 ~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ 632 (807)
.+|+|+....++.+|+.++...|+||||||+|.+...|.......+....+.+.++|.+++++....+++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999877654333334456788899999999877788999999999999
Q ss_pred CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003620 633 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 633 ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~ 712 (807)
+|++++||||||+.|+|+.|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999988888999999999999999999999999999998874
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 713 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
...|+.+||.+|+..+
T Consensus 348 --------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCccCHHHHHHHHHHh
Confidence 1269999999999875
No 44
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-38 Score=308.66 Aligned_cols=229 Identities=45% Similarity=0.800 Sum_probs=213.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.-++++|.|+||..+++++|+|.+++|+.||+.|-++|+.||+|||+|||||||||.+||++|+..++.|+.+-|+++..
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC----chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 356 (807)
+|+|+....++.+|+.|+....||||+||||++...+-.. .+++ +|..-.|++.+|++..++++-|+.+||+|+.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 9999999999999999999999999999999998766332 2233 3444557788899999999999999999999
Q ss_pred CCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhh
Q 003620 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430 (807)
Q Consensus 357 ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 430 (807)
+||+|.||||+++.++|..|+.+.|..|+++|.+.+.+..+..++.+++.+.+-+|+++..+|.+|.+.+++.+
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.7e-37 Score=359.22 Aligned_cols=246 Identities=42% Similarity=0.771 Sum_probs=226.8
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
..++|+|++|++++|+.+.+.+.+ ++.++.|..++..+++|+||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999998766 6778889999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCc
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~ 635 (807)
+|.....++.+|+.|+...||||||||||.+...|+...+........++++||.+||++....+++||+|||+|+.||+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888765444445567899999999999988889999999999999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (807)
Q Consensus 636 allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~ 715 (807)
|++||||||+.+++++|+.++|.+||+.++++.++..++++..+|+.|.||||+||+++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999999887664
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
...|+++||+.|+..+
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 1269999999999876
No 46
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=304.20 Aligned_cols=227 Identities=39% Similarity=0.697 Sum_probs=211.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003620 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
-+++.|+|+.|++.+++.|+|.+-+|+++|++|.. +-.|-++||||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 47899999999999999999999999999999975 45678999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccC-CceEEEEEecCCCCCCCHH
Q 003620 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~viVI~atn~~~~ld~a 360 (807)
|.|++++.++.+|+.|+.+.|+||||||||.+|..++...++..+|+...|+-.|.++.. ...|+|+|+||-|+.+|.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999988889999999999999998764 4689999999999999999
Q ss_pred hhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 003620 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 361 l~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
+|| ||++.|++|.|+...|..+++.|+...+. ..+.|+.++++.|+||+|+|+..+++.|.++.+|+..
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 999 99999999999999999999999877664 3456899999999999999999999999988877643
No 47
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=327.56 Aligned_cols=246 Identities=43% Similarity=0.728 Sum_probs=224.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..++++|+||||++.+++.|++.+.+|+.+|++|+.+|+.+++++||+||||||||++++++|++++..++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCc---hhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
++.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+++..++++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998764322 123346778888889988877889999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|++||++.|+++.|+.++|.+||+.++.++.+..+.++..++..++||+|+|+.++|++|++.++++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999998889999999999999999999999999999988764
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++.+||..|+..+
T Consensus 371 ----------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTV 386 (398)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2357788888887765
No 48
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-37 Score=355.07 Aligned_cols=265 Identities=38% Similarity=0.678 Sum_probs=228.0
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-----CeEEEEeCcc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPE 550 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~ 550 (807)
..+.|++|||+++++.+|+++|..|+.+++.|.++++.|++|+||+||||||||++|+++|..+. ..|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 46899999999999999999999999999999999999999999999999999999999999883 4677789999
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~ 630 (807)
.+++|+|+.|+.++.+|+.|+...|+||||||||-|++.|.... ...+..++++||..|||+.....|+||||||||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999986542 346778999999999999999999999999999
Q ss_pred CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHH
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 631 ~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~ 709 (807)
+.+|||+.||||||+.+|||+|+.++|.+|+..+.++..-. ...-+..+|+.+.||-||||+.+|.+|++.++++....
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999999886422 22336889999999999999999999999999986332
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCC
Q 003620 710 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVS 753 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~ 753 (807)
.- ........ ......|...||..|+..+.|+..
T Consensus 497 ~y---------~s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 497 IY---------SSSDKLLI-DVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred ee---------cccccccc-cchhhhhhhHhhhhhhhccCCCCC
Confidence 10 00000000 111234788888888887766443
No 49
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.8e-36 Score=351.66 Aligned_cols=291 Identities=36% Similarity=0.683 Sum_probs=243.4
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~ 555 (807)
....|+++.|++..++.+.+.+.+ ...+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998887 4556677778888899999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCc
Q 003620 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 556 vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~ 635 (807)
+|..+..++.+|+.|+...||||||||||.+...|+...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999988764333344567899999999999998889999999999999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003620 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (807)
Q Consensus 636 allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~ 715 (807)
|++||||||+.++|++||.++|.+||+.++++.++..++|+..+|+.|.||||+||.++|++|+..|++++
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhcCCC-------CCHHHH--HHHHHHHHHHhccc-C-CCccccccccCC
Q 003620 716 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS-------VSDADI--RKYQAFAQTLQQSR-G-IGSEFRFAEAGT 784 (807)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s-------~~~~~~--~~y~~~~~~~~~~~-~-~~~~~~~~~~~~ 784 (807)
...|+++||++|+..+.+. +++++. -.|.+....+-... . ...--..+-.++
T Consensus 377 -----------------~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr 439 (644)
T PRK10733 377 -----------------KRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR 439 (644)
T ss_pred -----------------CCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc
Confidence 2369999999999866443 233222 24444433332110 0 000012344577
Q ss_pred CCcCCCCCC
Q 003620 785 GATTGADPF 793 (807)
Q Consensus 785 ~~~~~~~~~ 793 (807)
|...|.+.|
T Consensus 440 g~~~g~~~~ 448 (644)
T PRK10733 440 GRALGVTFF 448 (644)
T ss_pred CCCcceeEE
Confidence 777777755
No 50
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.6e-36 Score=361.12 Aligned_cols=227 Identities=22% Similarity=0.349 Sum_probs=187.2
Q ss_pred CCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccc----------cC------------
Q 003620 500 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------ 557 (807)
Q Consensus 500 ~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~----------vg------------ 557 (807)
|........++|+.+++|+||+||||||||+||||+|++++.||+.|++++++++| +|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566788999999999999999999999999999999999999999998765 22
Q ss_pred -------------------CchH--HHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC
Q 003620 558 -------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 558 -------------------~se~--~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
+++. .++.+|+.|++.+||||||||||++.... .....+++||++||+..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 2223 38999999999999999999999997641 11224899999999863
Q ss_pred ---CCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh--ccCCCCcc-ccHHHHHHHcCCCCHHh
Q 003620 617 ---AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL--RKSPVSKD-VDLRALAKYTQGFSGAD 690 (807)
Q Consensus 617 ---~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~--~~~~~~~~-~dl~~la~~t~g~sgad 690 (807)
...+|+||||||+|+.||||++||||||+.|+++.|+..+|.+++..++ ++.++..+ +|+..+|+.|.||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 3568999999999999999999999999999999999999999998654 45566543 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc-------CCCCCHHHHHHHH
Q 003620 691 ITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA-------RRSVSDADIRKYQ 761 (807)
Q Consensus 691 i~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~-------~~s~~~~~~~~y~ 761 (807)
|+++|++|++.|+++.. ..|+..+++.|+... ..+....++..|+
T Consensus 1846 LanLvNEAaliAirq~k--------------------------s~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yE 1897 (2281)
T CHL00206 1846 LVALTNEALSISITQKK--------------------------SIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQ 1897 (2281)
T ss_pred HHHHHHHHHHHHHHcCC--------------------------CccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhH
Confidence 99999999999999762 257888888887643 1244555665564
No 51
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=308.02 Aligned_cols=228 Identities=46% Similarity=0.758 Sum_probs=213.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcC-CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
-.++|+||||++..++++++.+-+|+++|++|...+ ..+++||||+||||||||++|+++|++.++.|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 357899999999999999999999999999997444 4789999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCce--EEEEEecCCCCCCCH
Q 003620 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 359 (807)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--viVI~atn~~~~ld~ 359 (807)
|.|+.++.++.+|..|.+-+|+||||||+|+++..|+....+....+.+++..+-|++..+.+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998666667778888999999999987654 999999999999999
Q ss_pred HhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 003620 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 360 al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
++.| |+.+.++++.|+..+|.+||+..+++-.+.+++|+..+|..|+||+|+||..+|+.|+...++..+.
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999998887654
No 52
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=335.31 Aligned_cols=228 Identities=46% Similarity=0.800 Sum_probs=213.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|.|+.|+++++++|.|++.. |++|+.|.++|+..|+|+||+||||||||.||+++|++.+.+|+.++|++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCC---C-CchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCC
Q 003620 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld 358 (807)
.|....+++.+|+.|+.+.|||+||||||++...++ . ..++-....++||+..||++.....|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999884 2 223344567899999999999998999999999999999
Q ss_pred HHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 003620 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
++++||||||+.|.++.|+..+|.+|++.|.++..+. ++.++..++..|+||+|+||..+|.+|++.+.|+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999885 778899999999999999999999999999888654
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.1e-34 Score=347.67 Aligned_cols=267 Identities=49% Similarity=0.847 Sum_probs=237.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003620 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
.+.+.|++++|++..++.|++.+.+|+.++++++++++.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC-chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHH
Q 003620 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~a 360 (807)
|.|+++..++.+|+.|+...||||||||+|.+++.++.. ......+++.+|+..|+++....+++||+|||+|+.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999987643 2346778999999999999888899999999999999999
Q ss_pred hhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc-c
Q 003620 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-E 439 (807)
Q Consensus 361 l~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 439 (807)
+.|++||++.++++.|+.++|.+||+.+.+++++..++++..++..|+||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999988999999999999999999999999999998886543221100 0
Q ss_pred hhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 440 TIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 440 ~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
....+......++.+||..++...+|+..
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 00011123457899999999999888743
No 54
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.9e-34 Score=302.73 Aligned_cols=219 Identities=20% Similarity=0.250 Sum_probs=175.4
Q ss_pred ccccc-cchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccC
Q 003620 479 SWEDI-GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (807)
Q Consensus 479 ~~~~i-~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg 557 (807)
+|+++ +|+.-.+..+...+....++ .+...++++|++++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 44554 55555555554443322221 2233678999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhc-----CCCeEEEEeccchhhhccCCCCCCCCchHHHHH-HHHHhcccCC------------CCCC
Q 003620 558 ESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAKK 619 (807)
Q Consensus 558 ~se~~i~~~f~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~-~~lL~~ld~~------------~~~~ 619 (807)
++|+.+|++|+.|+. .+||||||||||++++.|+.+. .....+++ .+||+.||+. ....
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999975 4699999999999999987431 23445554 8999999863 2356
Q ss_pred cEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCC----CCHHhHHHHH
Q 003620 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG----FSGADITEIC 695 (807)
Q Consensus 620 ~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g----~sgadi~~l~ 695 (807)
+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.++++..++ ..|+..|+..+.| |+||--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 8999999999999999999999999864 5899999999999999998887 5788888888766 6776656666
Q ss_pred HHHHHHHHHH
Q 003620 696 QRACKYAIRE 705 (807)
Q Consensus 696 ~~A~~~a~~~ 705 (807)
.++...-+.+
T Consensus 345 d~~v~~~i~~ 354 (413)
T PLN00020 345 DDEVRKWIAE 354 (413)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 55
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=329.33 Aligned_cols=250 Identities=50% Similarity=0.837 Sum_probs=233.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+.+.|.++||++..++.+++.+.+|+.+++.|.+.++.++.++|||||||||||+||+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHH
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~a 360 (807)
+|.|+++++++.+|+.|+...||||||||+|++++.++...+....+++.+|+..|+++....+|+||++||+|+.+|++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 99999999999999999999999999999999999998766666689999999999999999999999999999999999
Q ss_pred hhccCccceEEEeCCCChHHHHHHHHHHhcCCC--CCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 003620 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (807)
Q Consensus 361 l~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (807)
+.|+|||+..++++.|+..+|.+|++.+++... +..+.+++.+++.+.||+|+|+..+|++|++.+++...
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------- 467 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------- 467 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999999999999999999998544 45788999999999999999999999999998887652
Q ss_pred chhhhhhhhhcccchhhHhhhhccCCCC
Q 003620 439 ETIDAEILNSMAVSNEHFQTALGTSNPS 466 (807)
Q Consensus 439 ~~~~~~~~~~~~v~~~~~~~al~~~~ps 466 (807)
...++..||..+++...|+
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCC
Confidence 3457889999999987776
No 56
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.5e-34 Score=316.35 Aligned_cols=251 Identities=50% Similarity=0.825 Sum_probs=225.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+++.|++|||++++++.|++++.+|+.+|++|+.+|+.++++|||+||||||||++|+++|++++.+|+.+++.++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCch---hHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
.+.|+.+..++.+|+.+....|+||||||+|.++.++..... ....+.+.+++..++++....++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877654321 12234556677778887777789999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|++||+..|+++.|+.++|.+||+.+++++.+..+.++..++..|+||+|+|+.++|++|++.++++.
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~------- 356 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD------- 356 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999988888899999999999999999999999999888753
Q ss_pred cchhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
...++.+||..|+..+.++..
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccc
Confidence 234788999999988876543
No 57
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=317.04 Aligned_cols=246 Identities=47% Similarity=0.781 Sum_probs=221.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+..+|+||||+++++++|++++.+|+.+|++++++|+.+++++||+||||||||++|+++|++++..|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchh---HHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
++.|+.+..++.+|..+..+.|+||||||+|.++.++....+. ...+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876533222 1234556677888888777789999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|++||++.|+++.|+..+|.+||+.++.++.+..++++..++..++||+|+|+.++|++|++.++++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999998888999999999999999999999999999988764
Q ss_pred cchhhhhhhhhcccchhhHhhhhccC
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++.+||..|+..+
T Consensus 409 ----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2347788888877654
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=6.5e-32 Score=322.75 Aligned_cols=444 Identities=23% Similarity=0.352 Sum_probs=298.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 272 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~ 272 (807)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 344677899999999887766643 234579999999999999999999987 677889
Q ss_pred Eechhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEe
Q 003620 273 INGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (807)
Q Consensus 273 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 350 (807)
++...+. .++.|+.+++++.+|+.+....++||||||+|.+++.+....+..+ +.+.|...+ .++.+.+||+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEe
Confidence 9988887 4788999999999999998888999999999999876543222221 222233333 3568999999
Q ss_pred cCCCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCC----C-CCchhhhHHhhhcCCCcHHH-----H
Q 003620 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVGAD-----L 415 (807)
Q Consensus 351 tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~----~-~~~~~l~~la~~t~g~~~~d-----l 415 (807)
|+..+ ..|+++.| ||. .++++.|+.+++.+||+.....+. + -.+..+..++..++.|.+.. .
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 99632 57999999 996 699999999999999986554321 1 23445677777777775442 2
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccCC--CCC-c----ceeeeeccccccccccchhh
Q 003620 416 AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSN--PSA-L----RETVVEVPNVSWEDIGGLEN 488 (807)
Q Consensus 416 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~--ps~-~----~~~~~~~~~~~~~~i~g~~~ 488 (807)
..++.+|+....-... ......++.+++...+.... |.. + .+........-...|.|+++
T Consensus 395 i~lld~a~a~~~~~~~-------------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 395 IDVIDEAGASFRLRPK-------------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred HHHHHHhhhhhhcCcc-------------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 3445554432110000 00123356666666654431 110 0 00001111112334556666
Q ss_pred HHHhhHhhhcCCCCchhhhhhcccC----CCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc-----------
Q 003620 489 VKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT----------- 553 (807)
Q Consensus 489 vk~~l~~~v~~~~~~~~~~~~~~~~----~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~----------- 553 (807)
+++.+.+.+... +.|+. |...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 666665554321 12322 2234899999999999999999999999999999988643
Q ss_pred -cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEE
Q 003620 554 -MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFI 623 (807)
Q Consensus 554 -~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~viv 623 (807)
.|+|.. ..+.+.+..+..+.+|+||||||.+ +..+.+.||+.||... +..+.+|
T Consensus 534 ~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 534 PGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCcccc--hhhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 233322 2334566667778899999999975 3467888888888631 2357889
Q ss_pred EecCCCCC-------------------------CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC-------CCC
Q 003620 624 IGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVS 671 (807)
Q Consensus 624 i~aTn~~~-------------------------~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~-------~~~ 671 (807)
|+|||... .+.|.++. |||.++.|.+.+.++..+|++..+++. .+.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99998742 14566665 999999999999999999999887532 111
Q ss_pred ---ccccHHHHHHH--cCCCCHHhHHHHHHHHHHHHHHHHH
Q 003620 672 ---KDVDLRALAKY--TQGFSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 672 ---~~~dl~~la~~--t~g~sgadi~~l~~~A~~~a~~~~~ 707 (807)
.+.-++.|++. ...|..+.|+.+++.-...++-+.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 12224566664 3456677888888777776666554
No 59
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-33 Score=311.91 Aligned_cols=229 Identities=47% Similarity=0.794 Sum_probs=215.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|.|+.|.++.++.+.|++.. ++.|.-|..+|..-|+||||+||||||||+||+++|++.+.+|+.++++++...+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 468999999999999999999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC---chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCH
Q 003620 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (807)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~ 359 (807)
+|-...++|.+|.+|+++.|||+||||||++..+|+.. ..+.....++||+..||++..+..|+|+++||+|+-+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999988633 223344588999999999998889999999999999999
Q ss_pred HhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcc
Q 003620 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 360 al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
+|.||+|||+.|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|++.+.++...
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877543
No 60
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-31 Score=314.61 Aligned_cols=447 Identities=22% Similarity=0.318 Sum_probs=293.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (807)
.++.+.|-++.++++.+.+.- ....++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 456788999998888876654 124578999999999999999999764 445566665
Q ss_pred hhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC
Q 003620 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 276 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 353 (807)
..+. .++.|+.+.+++.+|..+....++||||||+|.++..+....+..+ +.+++..+..++.+.+||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d------~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH------HHHHHHHHHhCCCeEEEecCCh
Confidence 5555 4678899999999999998888899999999999877643222221 2223333335678999999997
Q ss_pred CC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchh-----hhHHhhhcCC-----CcHHHHHHH
Q 003620 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD-----LERIAKDTHG-----YVGADLAAL 418 (807)
Q Consensus 354 ~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~-----l~~la~~t~g-----~~~~dl~~l 418 (807)
++ ..|++|.| ||. .|.++.|+.+++.+||+.+..++....++. +...+..+.. +.+.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 56999998 995 799999999999999997766554433332 3333333333 344456677
Q ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhcccchhhHhhhhccCC--CCC-cc----eeeeeccccccccccchhhHHH
Q 003620 419 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLENVKR 491 (807)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~--ps~-~~----~~~~~~~~~~~~~i~g~~~vk~ 491 (807)
+.+|+....- ... . .....++..++...+.... |.. +. +........--..|.|++++++
T Consensus 402 ldea~a~~~~--~~~---~--------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARL--MPV---S--------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhcc--Ccc---c--------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 7777643210 000 0 0011234444444332211 110 00 0000111111234789999999
Q ss_pred hhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-----ccccCCchHH----
Q 003620 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----TMWFGESEAN---- 562 (807)
Q Consensus 492 ~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-----~~~vg~se~~---- 562 (807)
.+.+.+....... .. .-+|...+||+||||||||++|+++|..++.+|+.++++++. ++++|.....
T Consensus 469 ~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 8888775321100 00 112334599999999999999999999999999999988764 2333332111
Q ss_pred -HHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCC--
Q 003620 563 -VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-- 630 (807)
Q Consensus 563 -i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~-- 630 (807)
-..+.+..+..+.+|+||||||.+ ...+.+.||+.||... +..+++||+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka--------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhh--------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 123445556677799999999996 3468888998888431 13578899999932
Q ss_pred -----------------------CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc-------CCCCcccc---HH
Q 003620 631 -----------------------DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-------SPVSKDVD---LR 677 (807)
Q Consensus 631 -----------------------~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~-------~~~~~~~d---l~ 677 (807)
..+.|.++. |+|.+|.|++.+.++..+|+...+++ .++.-.++ ++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 124577776 99999999999999999999877642 22222222 45
Q ss_pred HHHHHc--CCCCHHhHHHHHHHHHHHHHHHHH
Q 003620 678 ALAKYT--QGFSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 678 ~la~~t--~g~sgadi~~l~~~A~~~a~~~~~ 707 (807)
.|++.. ..|-.+.|+.+++.-....+-+.+
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 566543 334566888877777766666554
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.1e-31 Score=301.89 Aligned_cols=242 Identities=24% Similarity=0.404 Sum_probs=210.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
+..+|++|||++..++.+++.... ++....++|+.+++||||+||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 467899999999999988765432 23445678999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCC-CchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHh
Q 003620 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al 361 (807)
.|+++.+++.+|+.+....||||||||+|.++.++.. ..+....+++.+++.+|+.. ..+++||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 33456678889999999853 45799999999999999999
Q ss_pred hccCccceEEEeCCCChHHHHHHHHHHhcCCCC--CCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 003620 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL--SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (807)
Q Consensus 362 ~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (807)
.|+|||+..++++.|+.++|.+||+.++++... ..+.++..++..|+||+|+||.++|.+|...++...
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999988776432
Q ss_pred hhhhhhhhhcccchhhHhhhhccCCCCC
Q 003620 440 TIDAEILNSMAVSNEHFQTALGTSNPSA 467 (807)
Q Consensus 440 ~~~~~~~~~~~v~~~~~~~al~~~~ps~ 467 (807)
..++.+|+..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367889999999998875
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.2e-31 Score=292.36 Aligned_cols=245 Identities=53% Similarity=0.865 Sum_probs=217.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+++.|++|+|+++++++|++.+.+|+.+|+.+..+|+.+++++||+||||||||++|+++|+.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchh---HHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
.+.|+....++.+|+.+....|+||||||+|.++.++...... ...+.+.+++..++++....++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 9999999999999999999999999999999998766433221 2234456677777777666789999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.+++||++.++++.|+.++|.+|++.+..++.+..+.++..++..++||+|+|+..+|.+|++.++++.
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------- 347 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------- 347 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999988888888889999999999999999999999999888753
Q ss_pred cchhhhhhhhhcccchhhHhhhhcc
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGT 462 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~ 462 (807)
...++.+||..|+..
T Consensus 348 ----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred ----------CCccCHHHHHHHHHH
Confidence 234778888887654
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=2.9e-31 Score=304.78 Aligned_cols=244 Identities=44% Similarity=0.756 Sum_probs=219.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 003620 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
.+.++|+|++|+++.++++++++.. +++++.+.++|..+++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC---chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCC
Q 003620 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 282 ~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld 358 (807)
+.|.....++.+|+.+....|+||||||+|.++.+++.. ......+++.+|+..|+++..+.+++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877542 12334577889999999998888999999999999999
Q ss_pred HHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhcccccccc
Q 003620 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (807)
++++|++||++.++++.|+.++|.+|++.++++..+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999988877778889999999999999999999999988766542
Q ss_pred chhhhhhhhhcccchhhHhhhhccC
Q 003620 439 ETIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 439 ~~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++.+++..++...
T Consensus 280 ---------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRV 295 (495)
T ss_pred ---------CCCCCHHHHHHHHHHH
Confidence 2246777888877654
No 64
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-32 Score=273.75 Aligned_cols=229 Identities=44% Similarity=0.762 Sum_probs=207.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
...+++|+++||+-.++..+++.+++|+..|++|..+|+.+|++++||||||+|||.+|+++|...+..|+.+..+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHH---HHHHhhcccCCceEEEEEecCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ---LLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~---Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
++.|++...+|+.|..|+...|||||+||||++...+......-++.+... |++.|++.....+|-+|.|||+|+.+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 999999999999999999999999999999999988754433334444444 45556667777899999999999999
Q ss_pred CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHh
Q 003620 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 358 d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
+|+|.|+||+++.+++|.|++..|+.|++.|...+......+.+.+.+..+||.|+|+...|.+|.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999988888777788899999999999999999999998665543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.1e-31 Score=294.45 Aligned_cols=221 Identities=43% Similarity=0.715 Sum_probs=196.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------E
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 270 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------~ 270 (807)
..++++|+||||+++++++|++.+.+|+.+|++|..+|+.+++++|||||||||||++++++|++++.. |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457889999999999999999999999999999999999999999999999999999999999998543 6
Q ss_pred EEEechhhhhhhhchhHHHHHHHHHHHHhc----CCeEEEEccchhccCCCCCC-chhHHHHHHHHHHHHhhcccCCceE
Q 003620 271 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 345 (807)
Q Consensus 271 i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~Il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (807)
+.+.++++.+++.|+++..++.+|+.+... .|+||||||+|.++.+++.. .++.+++++.+|+..|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677888999999999999999999988763 69999999999999887643 4567788999999999999888899
Q ss_pred EEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC-CCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHH
Q 003620 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (807)
Q Consensus 346 iVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~-~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (807)
+||+|||+++.|||++.|+|||+..|+++.|+.++|.+||+.++.. +++ + .....+.|+.++++.++|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988753 343 2 22345789999999999999865
Q ss_pred HHH
Q 003620 425 QCI 427 (807)
Q Consensus 425 ~~~ 427 (807)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 443
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.1e-30 Score=297.09 Aligned_cols=243 Identities=42% Similarity=0.736 Sum_probs=216.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|+|++|+++.++.+.+++.. +++++.+..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999999877 7889999999999999999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC---chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCH
Q 003620 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (807)
Q Consensus 283 ~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~ 359 (807)
.|.....++.+|+.+..+.||||||||+|.++..++.. ........+.+|+..|+++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345677889999999888889999999999999999
Q ss_pred HhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccc
Q 003620 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (807)
Q Consensus 360 al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (807)
++.|++||++.+.++.|+.++|.+||+.++++..+..+.++..++..+.||+++|+..++++|++.+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred hhhhhhhhhcccchhhHhhhhccC
Q 003620 440 TIDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 440 ~~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
..++.+++..++..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235667777776543
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-30 Score=277.54 Aligned_cols=261 Identities=41% Similarity=0.652 Sum_probs=222.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
...++.|+|++|++..++.+.+++.+|+..|.+|..+. .+.+++||.||||+|||+|+++||.+.++.|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 45679999999999999999999999999999998764 56789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--CCceEEEEEecCCCCCCC
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSID 358 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~viVI~atn~~~~ld 358 (807)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|+||||||.|+++|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999966666777788877777766544 356899999999999999
Q ss_pred HHhhccCccceEEEeCCCChHHHHHHHHHHhcCCC-CCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccc
Q 003620 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
.+++| ||.+.+++|.|+.+.|..+|+.++...+ ...+.++..+++.|+||++.|+.++|++|++..++.......+.
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~ 382 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE 382 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh
Confidence 99999 9999999999999999999998876653 33557899999999999999999999999987666543320110
Q ss_pred cchhhhhhhhhcccchhhHhhhhccCCCCCc
Q 003620 438 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 468 (807)
Q Consensus 438 ~~~~~~~~~~~~~v~~~~~~~al~~~~ps~~ 468 (807)
.+ .......++..||..++..+.|+..
T Consensus 383 --~~--~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 383 --FI--DADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred --hc--chhccCCCCcchHHHHHHhhccccC
Confidence 01 1123445677888888888777643
No 68
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=2e-28 Score=257.53 Aligned_cols=217 Identities=22% Similarity=0.300 Sum_probs=174.0
Q ss_pred Ccccc-cChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhc
Q 003620 206 GYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (807)
Q Consensus 206 ~~~~i-~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 284 (807)
+|+++ ||+--...-+..++...- ......+++++|.+++||||||||||++|+++|++++..++.+++.++.++|.|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 776655555544432211 112233688999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh-----cCCeEEEEccchhccCCCCCCchhHHHHHH-HHHHHHhhcc------------cCCceEE
Q 003620 285 ESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHVI 346 (807)
Q Consensus 285 ~~~~~l~~vf~~a~~-----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~vi 346 (807)
++++.++.+|+.|.. ..||||||||||+++++++.....+..+++ .+|+++||+. ....+|+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999975 469999999999999998766566656665 8999998863 2356799
Q ss_pred EEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC----CcHHHHHHHHHHH
Q 003620 347 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG----YVGADLAALCTEA 422 (807)
Q Consensus 347 VI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g----~~~~dl~~l~~~a 422 (807)
||+|||+|+.|||+|+|+|||++.+ +.|+.++|.+||+.+++...+. ..++..++..++| |.|+--..+..++
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999964 6899999999999999987765 4678888888877 5565555555555
Q ss_pred HHHHH
Q 003620 423 ALQCI 427 (807)
Q Consensus 423 ~~~~~ 427 (807)
..+.+
T Consensus 348 v~~~i 352 (413)
T PLN00020 348 VRKWI 352 (413)
T ss_pred HHHHH
Confidence 44433
No 69
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=2.2e-27 Score=285.20 Aligned_cols=455 Identities=21% Similarity=0.305 Sum_probs=280.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEE
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFC 272 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~ 272 (807)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 344678899999987777665533 2235799999999999999999998762 44666
Q ss_pred Eechhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEE
Q 003620 273 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (807)
Q Consensus 273 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 349 (807)
++...+. ..+.|+++.+++.+|+.+.. ..++||||||+|.+...++... ..+ ..+ +|.....++.+.+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~n----~Lkp~l~~G~l~~Ig 321 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AAN----LLKPALARGELRTIA 321 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HHH----HhhHHhhCCCeEEEE
Confidence 7766665 36889999999999999865 4678999999999987654221 111 112 233333567899999
Q ss_pred ecCCCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-----CCchhhhHHhhhcCCCcHH-----H
Q 003620 350 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGA-----D 414 (807)
Q Consensus 350 atn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-----~~~~~l~~la~~t~g~~~~-----d 414 (807)
+|+..+ .+|++|.| || ..|.++.|+.+++.+||+.+.+.+.. ..+..+..++..+++|... .
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998643 47999999 99 47999999999999998766544321 1344577777777777543 2
Q ss_pred HHHHHHHHHHHH-HHhhccccc-----------------cc-------cch-----hhhh------hhhh----------
Q 003620 415 LAALCTEAALQC-IREKMDVID-----------------LE-------DET-----IDAE------ILNS---------- 448 (807)
Q Consensus 415 l~~l~~~a~~~~-~~~~~~~~~-----------------~~-------~~~-----~~~~------~~~~---------- 448 (807)
...++.+|+... +........ .. ... ...+ ....
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444433211 110000000 00 000 0000 0000
Q ss_pred ------------------------------------------------cccchhhHhhhhccCC--CCC-cce----eee
Q 003620 449 ------------------------------------------------MAVSNEHFQTALGTSN--PSA-LRE----TVV 473 (807)
Q Consensus 449 ------------------------------------------------~~v~~~~~~~al~~~~--ps~-~~~----~~~ 473 (807)
..++..++...+.... |.. +.. ...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~ 558 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVL 558 (852)
T ss_pred HHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHH
Confidence 0001111111000000 000 000 000
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhccc---CCCCC-ceeeCCCCCChhHHHHHHHHHh---CCeEEEE
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM---SPSKG-VLFYGPPGCGKTLLAKAIANEC---QANFISV 546 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~---~~~~g-iLl~GppGtGKT~lakalA~~~---~~~~i~v 546 (807)
.....--..+.|++.+.+.+.+.+.... .|+ ..|.| +||+||||||||.+|+++|..+ ...++.+
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 0000011345666666666666554321 122 12333 8999999999999999999988 4578999
Q ss_pred eCccccc------------cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC
Q 003620 547 KGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 547 ~~~~l~~------------~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
+++++.. .|+|..+. ..+.+..++.+++||+||||+.. +..+.+.|++.||.
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDK 694 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhc
Confidence 9887642 25554332 23456667788899999999863 45678888888875
Q ss_pred CC---------CCCcEEEEecCCCCC-----------------------------CCCccccCCCCcceeEEecCCCHHH
Q 003620 615 MS---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEDS 656 (807)
Q Consensus 615 ~~---------~~~~vivi~aTn~~~-----------------------------~ld~allrpgRfd~~i~~~~p~~~~ 656 (807)
.. +..+.+||.|||... .+.|+++. |++ +|.|.+.+.++
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~ 771 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDV 771 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHH
Confidence 32 135788999998521 13466666 998 89999999999
Q ss_pred HHHHHHHHhccC--------CCCcccc---HHHHHHHcCC--CCHHhHHHHHHHHHHHHHHHHH
Q 003620 657 RHQIFKACLRKS--------PVSKDVD---LRALAKYTQG--FSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 657 r~~Il~~~~~~~--------~~~~~~d---l~~la~~t~g--~sgadi~~l~~~A~~~a~~~~~ 707 (807)
..+|+...+... ++.-.++ ++.|++...+ |-.+.++++++.-...++.+.+
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999998877442 2221222 4667766533 5577888888877776666654
No 70
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=3.8e-27 Score=284.87 Aligned_cols=457 Identities=22% Similarity=0.341 Sum_probs=289.0
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (807)
-.++.+.|-+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3577899999999999887654 235589999999999999999999876 36788999
Q ss_pred chhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC
Q 003620 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 275 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 352 (807)
...+. .+|.|+++++++.+|+.+....++||||||+|.++...+... .. .+ .+++...-.++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~--~~----a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI--DA----ANILKPALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc--cH----HHHhHHHHhCCCcEEEEeCC
Confidence 88876 478899999999999999888889999999999987654322 21 11 12222333467889999998
Q ss_pred CCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhc------CCCCCCchhhhHHhhhcCCCcHH-----HHH
Q 003620 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK------NMKLSDDVDLERIAKDTHGYVGA-----DLA 416 (807)
Q Consensus 353 ~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~------~~~~~~~~~l~~la~~t~g~~~~-----dl~ 416 (807)
..+ ..|+++.+ ||. .+.++.|+.++...|++.... ++.+ .+..+..++..+++|.+. ...
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchHHH
Confidence 753 46899998 885 578999999999888874422 2222 334467777777777653 223
Q ss_pred HHHHHHHHHH-HHhhccccccc------------------cchhh-------------hh--------------hhhhcc
Q 003620 417 ALCTEAALQC-IREKMDVIDLE------------------DETID-------------AE--------------ILNSMA 450 (807)
Q Consensus 417 ~l~~~a~~~~-~~~~~~~~~~~------------------~~~~~-------------~~--------------~~~~~~ 450 (807)
.++.+|+... +.......... ..... .. ......
T Consensus 392 dlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (821)
T CHL00095 392 DLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPV 471 (821)
T ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCc
Confidence 4444443321 11000000000 00000 00 000012
Q ss_pred cchhhHhhhhccCC--CCC-cce----eeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCC
Q 003620 451 VSNEHFQTALGTSN--PSA-LRE----TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 523 (807)
Q Consensus 451 v~~~~~~~al~~~~--ps~-~~~----~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~Gp 523 (807)
++.+++...+.... |.. +.. ........--..|.|++.+.+.+...+...... +.. .-+|...+||+||
T Consensus 472 v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~Gp 547 (821)
T CHL00095 472 VTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSGP 547 (821)
T ss_pred cCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEECC
Confidence 33334333322211 110 000 000011111244778888888777766432110 000 1122234899999
Q ss_pred CCCChhHHHHHHHHHh---CCeEEEEeCccccc-----c-------ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 524 PGCGKTLLAKAIANEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 524 pGtGKT~lakalA~~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
+|||||++|++||..+ ..+++.++++++.. + |+|..+ .+.+....+..+.+|++|||||..
T Consensus 548 ~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-- 623 (821)
T CHL00095 548 TGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-- 623 (821)
T ss_pred CCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC--
Confidence 9999999999999987 35789998887632 2 333322 235667777777899999999985
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCCCC---------------------------
Q 003620 589 QRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI--------------------------- 632 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~~~--------------------------- 632 (807)
...+.+.||+.||... +..+.+||+|||....
T Consensus 624 ------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~ 691 (821)
T CHL00095 624 ------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLS 691 (821)
T ss_pred ------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHH
Confidence 3568888888888532 2457899999985321
Q ss_pred ----------CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC-------CCCcccc---HHHHHHHc--CCCCHHh
Q 003620 633 ----------IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGAD 690 (807)
Q Consensus 633 ----------ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~d---l~~la~~t--~g~sgad 690 (807)
+.|.++. |+|.+|.|.+.+.++..+|++..+.+. ++.-.++ .+.|++.. ..|-.+.
T Consensus 692 ~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 692 NLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 1244555 999999999999999999998877532 2221121 45666642 3445667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003620 691 ITEICQRACKYAIRENI 707 (807)
Q Consensus 691 i~~l~~~A~~~a~~~~~ 707 (807)
|+.+++.-...++.+.+
T Consensus 770 l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 770 LRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666665543
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.1e-28 Score=285.93 Aligned_cols=242 Identities=43% Similarity=0.719 Sum_probs=216.0
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhh
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 283 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~ 283 (807)
...|.+++|++..++.+.+++.+ +..+..+..++...+++++|+||||||||+++++++++++.+|+.+++.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34688999999999999999987 56777888888888999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCC---chhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHH
Q 003620 284 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 284 g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~a 360 (807)
+.....++.+|+.+....||||||||+|.++.+++.. ......+++.+|+..|+++.....++||++||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999999877542 2233456888999999999888899999999999999999
Q ss_pred hhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhccccccccch
Q 003620 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 440 (807)
Q Consensus 361 l~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 440 (807)
++|++||++.+.++.|+.++|.+||+.++++.++..+.++..+++.+.||+|+|+..+|++|+..+.+..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---------- 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---------- 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999999999998888899999999999999999999999999887643
Q ss_pred hhhhhhhhcccchhhHhhhhccC
Q 003620 441 IDAEILNSMAVSNEHFQTALGTS 463 (807)
Q Consensus 441 ~~~~~~~~~~v~~~~~~~al~~~ 463 (807)
...++..++..++..+
T Consensus 377 -------~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 377 -------KRVVSMVEFEKAKDKI 392 (644)
T ss_pred -------CCcccHHHHHHHHHHH
Confidence 2246667777776554
No 72
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.5e-28 Score=296.81 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=168.6
Q ss_pred ccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhh----------hc-----------
Q 003620 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL----------AG----------- 284 (807)
Q Consensus 226 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~----------~g----------- 284 (807)
.|.+.+.....+|+.+|+||||+||||||||.||+++|++.+.+|+.+++++++..+ .|
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 344445567789999999999999999999999999999999999999999998643 11
Q ss_pred --------------------hh--HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--
Q 003620 285 --------------------ES--ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-- 340 (807)
Q Consensus 285 --------------------~~--~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-- 340 (807)
.. ..+++.+|+.|+..+||||||||||+++.+.. ....+.+|+..|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 12 23488999999999999999999999987621 1123688999998763
Q ss_pred -CCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHH--hcCCCCCCc-hhhhHHhhhcCCCcHHHHH
Q 003620 341 -SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLA 416 (807)
Q Consensus 341 -~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~--~~~~~~~~~-~~l~~la~~t~g~~~~dl~ 416 (807)
...+|+||||||+|+.+||||+||||||+.|+++.|+..+|.+++..+ .+++.+..+ +++..+|..|.||+|+|++
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 345799999999999999999999999999999999999999988764 456666543 5789999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 003620 417 ALCTEAALQCIREKM 431 (807)
Q Consensus 417 ~l~~~a~~~~~~~~~ 431 (807)
++|.+|++.++++..
T Consensus 1848 nLvNEAaliAirq~k 1862 (2281)
T CHL00206 1848 ALTNEALSISITQKK 1862 (2281)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887653
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=1.7e-26 Score=279.88 Aligned_cols=456 Identities=22% Similarity=0.350 Sum_probs=284.1
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v 273 (807)
+-.++.+.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+ +..++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34567799999988877776644 234578999999999999999999876 5667888
Q ss_pred echhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEe
Q 003620 274 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (807)
Q Consensus 274 ~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 350 (807)
+...+. .++.|+.+.+++.+|..+.. ..++||||||+|.++..+.... .. ... +++.....++.+.+||+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~--d~~----~~Lk~~l~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM--DAG----NMLKPALARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh--HHH----HHhchhhhcCceEEEEe
Confidence 777665 46889999999999998865 4589999999999986543221 11 111 22333335678999999
Q ss_pred cCCCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-----CchhhhHHhhhcCCCcHH-----HH
Q 003620 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DL 415 (807)
Q Consensus 351 tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~l~~la~~t~g~~~~-----dl 415 (807)
|+..+ ..|+++.| ||. .+.++.|+.+++..||+.+...+... .+..+...+..+++|... ..
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 98763 47999999 995 58999999999999998776555432 233566666777776543 22
Q ss_pred HHHHHHHHHHH-HH------------hhcccc-------ccccc-----h---------------------hhhhh--h-
Q 003620 416 AALCTEAALQC-IR------------EKMDVI-------DLEDE-----T---------------------IDAEI--L- 446 (807)
Q Consensus 416 ~~l~~~a~~~~-~~------------~~~~~~-------~~~~~-----~---------------------~~~~~--~- 446 (807)
..++.+|+... +. +..... ..... . +..+. .
T Consensus 386 idlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (852)
T TIGR03346 386 IDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQ 465 (852)
T ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443211 10 000000 00000 0 00000 0
Q ss_pred ---------hh-------------------------------------------------cccchhhHhhhhccC--CCC
Q 003620 447 ---------NS-------------------------------------------------MAVSNEHFQTALGTS--NPS 466 (807)
Q Consensus 447 ---------~~-------------------------------------------------~~v~~~~~~~al~~~--~ps 466 (807)
.. ..++.+++...+... -|.
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~ 545 (852)
T TIGR03346 466 GIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPV 545 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCc
Confidence 00 001111111111100 000
Q ss_pred C-cc----eeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhccc----CCCCCceeeCCCCCChhHHHHHHHH
Q 003620 467 A-LR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIAN 537 (807)
Q Consensus 467 ~-~~----~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~----~~~~giLl~GppGtGKT~lakalA~ 537 (807)
. +. +........-...+.|++.+.+.+.+.+.... .|+ +|...+||+||||||||++|+++|.
T Consensus 546 ~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 546 SKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred ccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 0 00 00000001112346666666666665554211 122 2334589999999999999999999
Q ss_pred Hh---CCeEEEEeCccccc-----c-------ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHH
Q 003620 538 EC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAAD 602 (807)
Q Consensus 538 ~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~ 602 (807)
.+ +.+++.++++++.. + |+|..+ .+.+....+..+.+|||||||+.+ ..
T Consensus 618 ~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka--------------~~ 681 (852)
T TIGR03346 618 FLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA--------------HP 681 (852)
T ss_pred HhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC--------------CH
Confidence 87 45899999887632 2 233221 234555566677789999999875 35
Q ss_pred HHHHHHHhcccCCC---------CCCcEEEEecCCCCCC-------------------------CCccccCCCCcceeEE
Q 003620 603 RVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI-------------------------IDPALLRPGRLDQLIY 648 (807)
Q Consensus 603 ~v~~~lL~~ld~~~---------~~~~vivi~aTn~~~~-------------------------ld~allrpgRfd~~i~ 648 (807)
.+.+.||+.|+.-. +..+.+||+|||.... +.|.|+. |+|.++.
T Consensus 682 ~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Iiv 759 (852)
T TIGR03346 682 DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVV 759 (852)
T ss_pred HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEe
Confidence 67888888886431 2357889999998321 2355665 9999999
Q ss_pred ecCCCHHHHHHHHHHHhcc-------CCCC---ccccHHHHHHHc--CCCCHHhHHHHHHHHHHHHHHHHHH
Q 003620 649 IPLPDEDSRHQIFKACLRK-------SPVS---KDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 649 ~~~p~~~~r~~Il~~~~~~-------~~~~---~~~dl~~la~~t--~g~sgadi~~l~~~A~~~a~~~~~~ 708 (807)
|.+++.+...+|+...+.. ..+. .+.-++.|++.. ..+..+.|+++++......+-+.+-
T Consensus 760 F~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 760 FHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877742 1111 122256677653 2567789999999888877776543
No 74
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=1.7e-26 Score=278.52 Aligned_cols=455 Identities=20% Similarity=0.331 Sum_probs=270.0
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 273 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v 273 (807)
+-.++++.|.++.+.++.++++- ....+++|+||||||||++++.+|..+ +..++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34577899999988877776644 224579999999999999999999987 5678888
Q ss_pred echhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEe
Q 003620 274 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (807)
Q Consensus 274 ~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~a 350 (807)
+...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+.... ..+ . .+++...-.++.+.+||+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d--~----~~~lkp~l~~g~l~~Iga 313 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMD--A----GNMLKPALARGELHCVGA 313 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chh--H----HHHhcchhhcCCCeEEEc
Confidence 877765 46789999999999998654 5688999999999987654322 222 1 122333345678999999
Q ss_pred cCCCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-----CchhhhHHhhhcCCCcH-----HHH
Q 003620 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVG-----ADL 415 (807)
Q Consensus 351 tn~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~l~~la~~t~g~~~-----~dl 415 (807)
|+..+ .+|+++.| ||. .|.++.|+.+++..||+.+...+... .+..+...+..+++|.. ...
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 99876 47999999 996 58899999999999998776544322 22233444445555442 111
Q ss_pred HHHHHHHHHH-------------HHHhhcc-------ccccccch-------------------hh---------hhhh-
Q 003620 416 AALCTEAALQ-------------CIREKMD-------VIDLEDET-------------------ID---------AEIL- 446 (807)
Q Consensus 416 ~~l~~~a~~~-------------~~~~~~~-------~~~~~~~~-------------------~~---------~~~~- 446 (807)
..++..++.. .+.+... ....+... .. .+..
T Consensus 391 i~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~ 470 (857)
T PRK10865 391 IDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLS 470 (857)
T ss_pred HHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222211100 0000000 00000000 00 0000
Q ss_pred ---------hh-----------------------------------------------cccchhhHhhhhccCC--CCC-
Q 003620 447 ---------NS-----------------------------------------------MAVSNEHFQTALGTSN--PSA- 467 (807)
Q Consensus 447 ---------~~-----------------------------------------------~~v~~~~~~~al~~~~--ps~- 467 (807)
.. ..++.+++...+.... |..
T Consensus 471 ~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 550 (857)
T PRK10865 471 GTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSR 550 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchh
Confidence 00 0001111100000000 000
Q ss_pred cc----eeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccC----CCCCceeeCCCCCChhHHHHHHHHHh
Q 003620 468 LR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 468 ~~----~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~----~~~giLl~GppGtGKT~lakalA~~~ 539 (807)
+. +........-...+.|++.+.+.+...+.... .|+. |...+||+||||||||++|+++|..+
T Consensus 551 ~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 551 MLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred hhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 00 00000001112345566666666655543211 1221 22348999999999999999999886
Q ss_pred ---CCeEEEEeCcccccc------------ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHH
Q 003620 540 ---QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (807)
Q Consensus 540 ---~~~~i~v~~~~l~~~------------~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v 604 (807)
+.+|+.++++++... |+|..+ -..+....+..+.+||||||++.+ ...+
T Consensus 623 ~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka--------------~~~v 686 (857)
T PRK10865 623 FDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA--------------HPDV 686 (857)
T ss_pred hcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC--------------CHHH
Confidence 457899988876421 222211 122334445555689999999875 3457
Q ss_pred HHHHHhcccCCC---------CCCcEEEEecCCCCC-------------------------CCCccccCCCCcceeEEec
Q 003620 605 LNQLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIP 650 (807)
Q Consensus 605 ~~~lL~~ld~~~---------~~~~vivi~aTn~~~-------------------------~ld~allrpgRfd~~i~~~ 650 (807)
.+.|++.|+... +..+.+||+|||... .+.|+++. |+|.++.|.
T Consensus 687 ~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~ 764 (857)
T PRK10865 687 FNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFH 764 (857)
T ss_pred HHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecC
Confidence 777888776421 234678889999731 24467776 999999999
Q ss_pred CCCHHHHHHHHHHHhccC-------CCCcccc---HHHHHHHc--CCCCHHhHHHHHHHHHHHHHHHHH
Q 003620 651 LPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 651 ~p~~~~r~~Il~~~~~~~-------~~~~~~d---l~~la~~t--~g~sgadi~~l~~~A~~~a~~~~~ 707 (807)
+++.+...+|++.++.+. .+.-.++ +..|++.. ..|-.+.|+.+++.-....+-+.+
T Consensus 765 PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 765 PLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877542 2221222 34455432 123356788777777666665543
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-25 Score=257.41 Aligned_cols=454 Identities=22% Similarity=0.347 Sum_probs=291.8
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (807)
-.++.+.|-++.++++.+.+.-. ..++-+|+|+||+|||.++..+|..+ +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 35677899999999888877652 23457889999999999999999765 34567777
Q ss_pred chhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC
Q 003620 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 275 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 352 (807)
-..+. .+|.|+.+++++.++++.....+.||||||+|.+.......++.++ .-+++...-.++.+-+||+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEecc
Confidence 66655 4789999999999999999888999999999999877543221122 123344444677888898887
Q ss_pred CCC-----CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCC-----chhhhHHhhhcCCCc-----HHHHHH
Q 003620 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYV-----GADLAA 417 (807)
Q Consensus 353 ~~~-----~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~-----~~~l~~la~~t~g~~-----~~dl~~ 417 (807)
.-+ +-|+||.| || ..|.+..|+.++-..||+-...++.... +.-+...+..++.|. +.-...
T Consensus 308 ~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 308 LDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred HHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 532 34899998 89 5689999999999999986654443322 223444444444433 323344
Q ss_pred HHHHHHHHHHHhhccccccc------------cch-------hhhhhhh---hc--------------ccchhhHhhhhc
Q 003620 418 LCTEAALQCIREKMDVIDLE------------DET-------IDAEILN---SM--------------AVSNEHFQTALG 461 (807)
Q Consensus 418 l~~~a~~~~~~~~~~~~~~~------------~~~-------~~~~~~~---~~--------------~v~~~~~~~al~ 461 (807)
++.+|+....-.......+. ... ....... .. .++.+++...+.
T Consensus 385 LiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~ 464 (786)
T COG0542 385 LLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVA 464 (786)
T ss_pred HHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHH
Confidence 55555432211100000000 000 0000000 00 122333333322
Q ss_pred cCC--CCC-c----ceeeeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhccc----CCCCCceeeCCCCCChhH
Q 003620 462 TSN--PSA-L----RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTL 530 (807)
Q Consensus 462 ~~~--ps~-~----~~~~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~----~~~~giLl~GppGtGKT~ 530 (807)
... |.. + ++......+.--..+.|++++.+.+...|... +.|+ +|...+||.||+|+|||.
T Consensus 465 ~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 465 RWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred HHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHH
Confidence 211 111 1 11111222222345788888888877776532 2232 333458999999999999
Q ss_pred HHHHHHHHhC---CeEEEEeCccccc------------cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCC
Q 003620 531 LAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 531 lakalA~~~~---~~~i~v~~~~l~~------------~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
|||+||..+. ..++.+++|+++. .|||-.+ =..+-+..|+.+.|||+||||+.
T Consensus 537 LAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK---------- 604 (786)
T COG0542 537 LAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK---------- 604 (786)
T ss_pred HHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh----------
Confidence 9999999986 7899999999963 3565444 24677778888899999999988
Q ss_pred CCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCCC----------------------------CCCcccc
Q 003620 596 DAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD----------------------------IIDPALL 638 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~~----------------------------~ld~all 638 (807)
++..|++.||+.||... +.++.+||+|||--. .+-|+++
T Consensus 605 ----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL 680 (786)
T COG0542 605 ----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL 680 (786)
T ss_pred ----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH
Confidence 67889999999999742 246889999998521 1245666
Q ss_pred CCCCcceeEEecCCCHHHHHHHHHHHhccC-------CCCccc---cHHHHHHHc--CCCCHHhHHHHHHHHHHHHHHHH
Q 003620 639 RPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDV---DLRALAKYT--QGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 639 rpgRfd~~i~~~~p~~~~r~~Il~~~~~~~-------~~~~~~---dl~~la~~t--~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
. |+|.+|.|.+.+.+...+|+...+... .+.-.+ -.+.|++.. ..|-++-|+.++++-....+-+.
T Consensus 681 N--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~ 758 (786)
T COG0542 681 N--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADE 758 (786)
T ss_pred h--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999998887442 222111 135566543 34555666666655544444433
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.8e-23 Score=211.16 Aligned_cols=187 Identities=30% Similarity=0.495 Sum_probs=151.8
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcc-cCCCCCceeeCCCCCChhHHHHHHHHHh---------CCeEEEEeC
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~giLl~GppGtGKT~lakalA~~~---------~~~~i~v~~ 548 (807)
-|+.+.--.++|+.|..++...+...+.-.+-+ +...+-+||+||||||||+|+||+|..+ ....+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 488877778889888877654333222111111 2344559999999999999999999986 346799999
Q ss_pred ccccccccCCchHHHHHHHHHHhcC-----CCeEEEEeccchhhhccCC-CCCCCCchHHHHHHHHHhcccCCCCCCcEE
Q 003620 549 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRGS-SVGDAGGAADRVLNQLLTEMDGMSAKKTVF 622 (807)
Q Consensus 549 ~~l~~~~vg~se~~i~~~f~~a~~~-----~p~ilfiDEid~l~~~r~~-~~~~~~~~~~~v~~~lL~~ld~~~~~~~vi 622 (807)
..++++|++||.+.+..+|++.... .--.++|||+++|+..|.. +........-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987542 2346679999999998843 222334456799999999999999999999
Q ss_pred EEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc
Q 003620 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 667 (807)
Q Consensus 623 vi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~ 667 (807)
+++|+|--+.||.|+.. |-|-+.|+++|+...+.+|++.++.+
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999998 99999999999999999999998854
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2.6e-22 Score=213.27 Aligned_cols=215 Identities=23% Similarity=0.331 Sum_probs=166.6
Q ss_pred cccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCC-C--ceeeCCCCCChhHHHHHHHHHhC-------CeEEEEeCc
Q 003620 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK-G--VLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 549 (807)
Q Consensus 480 ~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~-g--iLl~GppGtGKT~lakalA~~~~-------~~~i~v~~~ 549 (807)
+.+++|++++|+++.+++.+. .........|+.++. | ++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 457999999999999998773 344555666765542 3 89999999999999999999752 368999999
Q ss_pred cccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCC
Q 003620 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~ 629 (807)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999889999998754 59999999999754322 235678899999999864 345777777764
Q ss_pred CC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC--CCccccHHHHHHH------cCCCC-HHhHHHHH
Q 003620 630 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKY------TQGFS-GADITEIC 695 (807)
Q Consensus 630 ~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~--~~~~~dl~~la~~------t~g~s-gadi~~l~ 695 (807)
.. .++|++.| ||+.+|+|++++.+++.+|++.++++.. ++.+. ...+... ...|. ++++++++
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 22 34799998 9999999999999999999999997654 33322 2223322 24454 89999999
Q ss_pred HHHHHHHHHHHHH
Q 003620 696 QRACKYAIRENIE 708 (807)
Q Consensus 696 ~~A~~~a~~~~~~ 708 (807)
..|......+...
T Consensus 248 e~~~~~~~~r~~~ 260 (287)
T CHL00181 248 DRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHc
Confidence 9998887777654
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5e-22 Score=212.95 Aligned_cols=222 Identities=21% Similarity=0.336 Sum_probs=172.1
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccC
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg 557 (807)
-+|+.++--.++|+.+.+-+....+..+-+++.|....+|.|||||||||||+++.|+|+.++....-++.+++.
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~----- 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK----- 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----
Confidence 567778888899999999888888999999999999999999999999999999999999999988888777643
Q ss_pred CchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCC---CC-chHHHHHHHHHhcccCCCCC--CcEEEEecCCCCC
Q 003620 558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD---AG-GAADRVLNQLLTEMDGMSAK--KTVFIIGATNRPD 631 (807)
Q Consensus 558 ~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~---~~-~~~~~v~~~lL~~ld~~~~~--~~vivi~aTn~~~ 631 (807)
.... ++.+.-.+... +||+|++||.-+..|+..... .+ ....-.++-||+.+||+-.. +-.|||.|||.++
T Consensus 273 ~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2223 88888777665 699999999987655433221 11 12334689999999998653 3678999999999
Q ss_pred CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC-CCccccHHHHHHHcCCCCHHhHHHHH-HH--HHHHHHHHHH
Q 003620 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEIC-QR--ACKYAIRENI 707 (807)
Q Consensus 632 ~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~dl~~la~~t~g~sgadi~~l~-~~--A~~~a~~~~~ 707 (807)
.|||||+||||+|.+||++.-+.++-..+++.++.-.. ...-.++..+...++ .|+||+...+ .. .+..|+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999996532 111123344333333 6999998643 22 4556666555
Q ss_pred H
Q 003620 708 E 708 (807)
Q Consensus 708 ~ 708 (807)
+
T Consensus 429 ~ 429 (457)
T KOG0743|consen 429 E 429 (457)
T ss_pred H
Confidence 4
No 79
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=6.8e-22 Score=210.35 Aligned_cols=213 Identities=21% Similarity=0.300 Sum_probs=166.4
Q ss_pred cccchhhHHHhhHhhhcCCCCchhhhhhcccCC---CCCceeeCCCCCChhHHHHHHHHHhC-------CeEEEEeCccc
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 551 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~---~~giLl~GppGtGKT~lakalA~~~~-------~~~i~v~~~~l 551 (807)
+++|++++|+++.+.+.+ ...++.+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999999887 45566667777764 34699999999999999999998763 37999999999
Q ss_pred cccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCC--
Q 003620 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-- 629 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~-- 629 (807)
.+.|+|+++..++.+|+.|.. ++|||||++.+.+.++. .....++++.|++.|+.. ..+++||++++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 59999999998654321 235678889999999853 356777777654
Q ss_pred CCC---CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHH------cCC-CCHHhHHHHHHHH
Q 003620 630 PDI---IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY------TQG-FSGADITEICQRA 698 (807)
Q Consensus 630 ~~~---ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~------t~g-~sgadi~~l~~~A 698 (807)
++. ++|++.+ ||+..|+||+++.+++..|++.++++....-+.+ +..+..+ .+. -+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 333 4899999 9999999999999999999999998764322222 3333333 122 3589999999999
Q ss_pred HHHHHHHHH
Q 003620 699 CKYAIRENI 707 (807)
Q Consensus 699 ~~~a~~~~~ 707 (807)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 877766653
No 80
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=203.42 Aligned_cols=181 Identities=29% Similarity=0.536 Sum_probs=147.1
Q ss_pred cCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCCC-eEEEEeccchhhhcc
Q 003620 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQR 590 (807)
Q Consensus 512 ~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p-~ilfiDEid~l~~~r 590 (807)
..|.++||||||||||||+.|+-||..++..+-.+.|.|+.-. -.+....|+++|++|..+.. -+|||||+|+++..|
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 3456779999999999999999999999999999999887432 22445689999999988765 478999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCC
Q 003620 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 670 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~ 670 (807)
+.. ..+...+..+|.||---. ..++.++++.+||+|..+|.|+-. |||.+|+||+|.+++|.++|..++.++-+
T Consensus 460 nkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 460 NKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred chh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 764 345567788888875433 346689999999999999999998 99999999999999999999999865421
Q ss_pred C----c-------------------c----ccHHHHHHHcCCCCHHhHHHHHHHHH
Q 003620 671 S----K-------------------D----VDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 671 ~----~-------------------~----~dl~~la~~t~g~sgadi~~l~~~A~ 699 (807)
. . . .-+.+.|++|+||||++|..++....
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1 0 0 11467889999999999999886543
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2e-21 Score=205.21 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=159.9
Q ss_pred cccccchhhHHHhhHhhhcCCCCchhhhhhcccCCC---CCceeeCCCCCChhHHHHHHHHHh-------CCeEEEEeCc
Q 003620 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (807)
Q Consensus 480 ~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~---~giLl~GppGtGKT~lakalA~~~-------~~~~i~v~~~ 549 (807)
+++++|++++|+.+++.+.|+... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998876543 22233455433 348999999999999999999874 2478899999
Q ss_pred cccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCC
Q 003620 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~ 629 (807)
++.+.|+|+++..++.+|+.|.. +||||||+|.|... . ........++.|+..|+.. ...+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~--~----~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG--G----EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC--C----ccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 99999999999999999998854 59999999999631 1 1224567889999999864 344555555543
Q ss_pred CC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHH---------cCCCCHHhHHHH
Q 003620 630 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY---------TQGFSGADITEI 694 (807)
Q Consensus 630 ~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~---------t~g~sgadi~~l 694 (807)
.+ .++|++.+ ||+..++||.++.+++.+|++.+++.....-+.+ +..+++. ...-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 36889988 9999999999999999999999998665432222 3344322 112467888888
Q ss_pred HHHHHHHHHHHHH
Q 003620 695 CQRACKYAIRENI 707 (807)
Q Consensus 695 ~~~A~~~a~~~~~ 707 (807)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 8888877766654
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.5e-21 Score=183.88 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=118.2
Q ss_pred ceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCC-CeEEEEeccchhhhccCCCCCC
Q 003620 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 596 (807)
Q Consensus 518 iLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~-p~ilfiDEid~l~~~r~~~~~~ 596 (807)
+||+||||||||++++.+|..++.+++.++++++.+.+.+++++.++.+|+.+.... |+||||||+|.+.+..+ ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999888 99999999999999872 22
Q ss_pred CCchHHHHHHHHHhcccCCCCC-CcEEEEecCCCCCCCCccccCCCCcceeEEecC
Q 003620 597 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651 (807)
Q Consensus 597 ~~~~~~~v~~~lL~~ld~~~~~-~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~ 651 (807)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3557788999999999998765 679999999999999999998 89999999984
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=3.3e-19 Score=167.88 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=118.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CeEEEEccchhccCCCCCCchh
Q 003620 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~Il~iDEid~l~~~~~~~~~~ 323 (807)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++....+..+|+.+.... |+||||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999999887 9999999999999887545666
Q ss_pred HHHHHHHHHHHHhhcccCC-ceEEEEEecCCCCCCCHHhhccCccceEEEeCC
Q 003620 324 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~-~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~ 375 (807)
....+..+|+..++..... .+++||++||.++.+++.+.+ +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999988765 569999999999999999998 89999998863
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=9.7e-18 Score=178.36 Aligned_cols=213 Identities=17% Similarity=0.299 Sum_probs=159.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhcCCCC---CceEEEEcCCCCCHHHHHHHHHHHhC-------CeEEEEech
Q 003620 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGP 276 (807)
Q Consensus 207 ~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~ 276 (807)
+.+++|++++|++|++++.+ +..+.+..++|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34799999999999999987 44567777777754 34599999999999999999998752 358999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC--
Q 003620 277 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 354 (807)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~-- 354 (807)
++.+.+.|+.+.+++.+|+.+. ++||||||+|.+...++ ..+....+...|+.+|+... ..++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHH
Confidence 9999999988888888888764 46999999999875432 22355677888999887643 456777766532
Q ss_pred C---CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCC--CCCchhhhHHhh----h--cCCCc-HHHHHHHHHHH
Q 003620 355 N---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAK----D--THGYV-GADLAALCTEA 422 (807)
Q Consensus 355 ~---~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~l~~la~----~--t~g~~-~~dl~~l~~~a 422 (807)
+ .++|++++ ||+..++|+.++.+++.+|++.+++... +.++. ...+.. . ...|. ++.+..++..+
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 1 34689998 9999999999999999999998876433 33322 222222 1 23454 78899988888
Q ss_pred HHHHHHhh
Q 003620 423 ALQCIREK 430 (807)
Q Consensus 423 ~~~~~~~~ 430 (807)
..+...+.
T Consensus 251 ~~~~~~r~ 258 (287)
T CHL00181 251 RMRQANRI 258 (287)
T ss_pred HHHHHHHH
Confidence 77655443
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1e-17 Score=178.39 Aligned_cols=211 Identities=18% Similarity=0.290 Sum_probs=157.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhcCCCC---CceEEEEcCCCCCHHHHHHHHHHHhC-------CeEEEEechhh
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~l 278 (807)
+++|++++|++|++++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 66777888888764 45899999999999999999988763 36899999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC--CC-
Q 003620 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR--PN- 355 (807)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~--~~- 355 (807)
.+.+.|+++..++.+|+.+. +++|||||++.+.+.++ .......+...|+..|+... ..++||++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 99899988888888888764 36999999999865432 22345567788888887543 46677776653 23
Q ss_pred --CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhc------CCC-cHHHHHHHHHHHHHH
Q 003620 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HGY-VGADLAALCTEAALQ 425 (807)
Q Consensus 356 --~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~~ 425 (807)
.++|++++ ||...++++.++.+++.+|++.+++..... +...+..+.... +.+ .++.+..++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34899998 999999999999999999999887654321 222233333321 122 357777777777665
Q ss_pred HHHh
Q 003620 426 CIRE 429 (807)
Q Consensus 426 ~~~~ 429 (807)
...+
T Consensus 253 ~~~r 256 (284)
T TIGR02880 253 QANR 256 (284)
T ss_pred HHHH
Confidence 4433
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=4.2e-17 Score=172.35 Aligned_cols=175 Identities=22% Similarity=0.320 Sum_probs=132.9
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhcCCC---CCceEEEEcCCCCCHHHHHHHHHHHh-------CCeEEEEech
Q 003620 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 276 (807)
Q Consensus 207 ~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLar~la~~l-------~~~~i~v~~~ 276 (807)
+++++|++++|++|++++.++... ......|.. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 223334543 34569999999999999999999874 2467889999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC--
Q 003620 277 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 354 (807)
Q Consensus 277 ~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~-- 354 (807)
++.+.+.|+....++.+|+.+. ++||||||+|.|....+ ....+..+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998764 46999999999974221 2233556677888887653 344555444322
Q ss_pred ---CCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCC
Q 003620 355 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM 392 (807)
Q Consensus 355 ---~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~ 392 (807)
..++|++++ ||...+.++.++.+++.+|++.++...
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 236788988 898899999999999999999877644
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=2.9e-17 Score=163.28 Aligned_cols=188 Identities=26% Similarity=0.415 Sum_probs=123.4
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~v 556 (807)
+-+++|++|+++++..++-.+....... .+..+++||||||+||||||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 4579999999999998876554321111 2234699999999999999999999999999999887542
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC----------------CCCc
Q 003620 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 620 (807)
Q Consensus 557 g~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~ 620 (807)
....+..++..... ..||||||||.+.. .+...|+..|+... +..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 22445555555543 46999999999843 34555666666431 1246
Q ss_pred EEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHH
Q 003620 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 621 vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~ 697 (807)
+.+||||++...|.+.|.. ||..+..+..++.++..+|++...+...+.-+.+ ..++|..+.| +++=-.++++.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 8999999999999999987 9999999999999999999998888877654333 5677877765 55444444443
No 88
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=4.1e-17 Score=196.65 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=144.9
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc--------
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------- 552 (807)
+++.|++++|+.+.+++...... +-.....+||+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999999876643211 111223699999999999999999999999999998765432
Q ss_pred -ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC-----C--------CCC
Q 003620 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----M--------SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~-----~--------~~~ 618 (807)
..|+|.....+.+.|..+....| |+||||||.+.+.... . ..+.||..||. + .+.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-------~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-------D---PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-------C---HHHHHHHhcCHHhcCccccccCCceecc
Confidence 46888888888999998877666 8999999999753211 1 23456665552 1 123
Q ss_pred CcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc-----cCCCC------ccccHHHHHH-HcCCC
Q 003620 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR-----KSPVS------KDVDLRALAK-YTQGF 686 (807)
Q Consensus 619 ~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~-----~~~~~------~~~dl~~la~-~t~g~ 686 (807)
.++++|+|||.++.|++++++ ||+ +|.|+.|+.+++.+|++.++. ...+. .+..+..+++ .+..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999998 996 789999999999999988762 22221 1122455554 23334
Q ss_pred CHHhHHHHHHHHHHHHHHH
Q 003620 687 SGADITEICQRACKYAIRE 705 (807)
Q Consensus 687 sgadi~~l~~~A~~~a~~~ 705 (807)
..++|+..+...+..+..+
T Consensus 539 g~R~l~r~i~~~~~~~~~~ 557 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVK 557 (775)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 4556666655555554443
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=6.8e-17 Score=193.79 Aligned_cols=242 Identities=21% Similarity=0.257 Sum_probs=164.8
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v~ 547 (807)
-.++++.|.++....+.+.+.. ....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3567788888777766655432 223569999999999999999999987 66788999
Q ss_pred Ccccc--ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEe
Q 003620 548 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~ 625 (807)
...+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+. + ...+.+.|+..|. .+.+.+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~----~-~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG----G-SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC----c-cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 589999999999999999887899999999999987653221 1 1223344444443 46789999
Q ss_pred cCCCC-----CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC----CCC-ccccHHHHHHHcCCCCHH-----h
Q 003620 626 ATNRP-----DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKYTQGFSGA-----D 690 (807)
Q Consensus 626 aTn~~-----~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~----~~~-~~~dl~~la~~t~g~sga-----d 690 (807)
|||.. ..+|+|+.| ||. .|+++.|+.+++.+||+...... .+. .+..+..++..+..|-+. .
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 99874 357999999 997 79999999999999999776542 111 233456666666555432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHH
Q 003620 691 ITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR----RSVSDADIRKYQAFAQT 766 (807)
Q Consensus 691 i~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~----~s~~~~~~~~y~~~~~~ 766 (807)
--.++.+|+..+.-+. . ......|+.+|+..++.... ..++.++..+.....+.
T Consensus 394 ai~lld~a~a~~~~~~----------------~------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~ 451 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP----------------K------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKN 451 (731)
T ss_pred HHHHHHHhhhhhhcCc----------------c------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHH
Confidence 2334444432111000 0 00123588888888887752 24555666555544333
No 90
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.4e-17 Score=167.12 Aligned_cols=173 Identities=27% Similarity=0.382 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHccccChhhhhhcC-CCCCceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechhhhhhhhc
Q 003620 215 KQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAG 284 (807)
Q Consensus 215 ~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~~g 284 (807)
..|+++-.+....+...+.-.+-. +.-.+-|||+||||||||+|++++|+.+. ...+.+++..++++|.+
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 345666555544333322111111 33456699999999999999999999874 34699999999999999
Q ss_pred hhHHHHHHHHHHHHhc-----CCeEEEEccchhccCCCCCC--ch--hHHHHHHHHHHHHhhcccCCceEEEEEecCCCC
Q 003620 285 ESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKT--HG--EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 285 ~~~~~l~~vf~~a~~~-----~p~Il~iDEid~l~~~~~~~--~~--~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
++.+.+..+|+..... .-..++|||+++|+..|... .+ ...-|+++.+++++|.++...+|++++|+|-.+
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~ 308 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD 308 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH
Confidence 9999999999987652 12356799999998655221 11 123489999999999999999999999999999
Q ss_pred CCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
.+|.|+-. |-|-..++++|+...+.+|++...
T Consensus 309 siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 309 SIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 99999987 889999999999999999998654
No 91
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.4e-16 Score=168.33 Aligned_cols=178 Identities=26% Similarity=0.369 Sum_probs=137.3
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhc
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 284 (807)
-+|+.++=-.+.+++|.+=+..-.+..+.+++.|..-.+|.|||||||||||+++.|+|+.++..++.++-.+...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 4555555555667777666666577788999999999999999999999999999999999999988887655432
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCch---h----HHHHHHHHHHHHhhcccCCc--eEEEEEecCCCC
Q 003620 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPN 355 (807)
Q Consensus 285 ~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~viVI~atn~~~ 355 (807)
... ++.++-..... +||+|++||.-+.-++.... + ..+-.++.||+.+|++.+.. .-+||.|||.++
T Consensus 274 -n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 122 77776665443 69999999987653221111 1 11234578999999998765 567778999999
Q ss_pred CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhc
Q 003620 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 390 (807)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~ 390 (807)
.|||||.||||+|.+|+++.-+..+-..+.+.++.
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999988877777654
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1.3e-15 Score=165.13 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=134.4
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCC
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~ 558 (807)
+|+++.|++++++.|...+...... -..+.+++|+||||||||++|+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6899999999999998877432111 123456999999999999999999999988877666543321
Q ss_pred chHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC----------------CCCcEE
Q 003620 559 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 622 (807)
Q Consensus 559 se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~vi 622 (807)
...+...+... ..+.++|||||+.+.+. ..+.|+..|+... ...+++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 34579999999998542 1122333332111 123488
Q ss_pred EEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHHH
Q 003620 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 623 vi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~~ 701 (807)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++.......+.- +..+..+++.+.|+- +.+.+++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 99999999999999988 9999999999999999999998887654432 233678888887744 6777777766544
Q ss_pred H
Q 003620 702 A 702 (807)
Q Consensus 702 a 702 (807)
|
T Consensus 209 a 209 (305)
T TIGR00635 209 A 209 (305)
T ss_pred H
Confidence 4
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.69 E-value=1.1e-15 Score=167.20 Aligned_cols=236 Identities=22% Similarity=0.309 Sum_probs=162.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~v 556 (807)
+.+|+++.|.+++++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 35799999999999999877643211 113456799999999999999999999999888777766432
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhc------ccCCC-------CCCcEEE
Q 003620 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE------MDGMS-------AKKTVFI 623 (807)
Q Consensus 557 g~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~------ld~~~-------~~~~viv 623 (807)
....+..++.... .++||||||||.+... ....+..++.. ++.-. ...++.+
T Consensus 89 --~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 --KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred --ChHHHHHHHHhcc--cCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 2234555555443 4579999999998431 12222222221 11100 1134788
Q ss_pred EecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 624 i~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
|++||++..+++++.+ ||...+.+++|+.+++.+|++.......+.-+ .-+..+++.+.|. .+.+.++++.+...|
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a 230 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFA 230 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHH
Confidence 9999999999999887 99999999999999999999998877655432 2367888888764 467777777665554
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHh
Q 003620 703 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR---SVSDADIRKYQAFAQTLQ 768 (807)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~---s~~~~~~~~y~~~~~~~~ 768 (807)
..+. ...|+.++...++..+.. .+++.+.+.+..+...|.
T Consensus 231 ~~~~--------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 231 QVKG--------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHcC--------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 4321 125777777777766533 456666666655666654
No 94
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.3e-16 Score=163.10 Aligned_cols=175 Identities=31% Similarity=0.550 Sum_probs=130.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCC-eEEEEccchhccCCCCC
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP-SIIFIDEIDSIAPKREK 319 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p-~Il~iDEid~l~~~~~~ 319 (807)
+-++|++|||||||||++|+.||...|..+-...|.++. ..-.+.-.++..+|+-+..... -+|||||.|+++-.+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 346799999999999999999999999998877776653 2223455689999999987655 47899999988766654
Q ss_pred Cc-hhHHHHHHHHHHHHhhcc-cCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC--
Q 003620 320 TH-GEVERRIVSQLLTLMDGL-KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-- 395 (807)
Q Consensus 320 ~~-~~~~~~v~~~Ll~~ld~~-~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-- 395 (807)
.. ++..+. .|..++-.- .....++++.+||+|..+|.++.. |++..++||.|.+++|..+|..++.++...
T Consensus 462 tymSEaqRs---aLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 462 TYMSEAQRS---ALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhcHHHHH---HHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 32 333333 333333221 123467778899999999999987 999999999999999999998766443211
Q ss_pred ----------------------C---chhhhHHhhhcCCCcHHHHHHHHHH
Q 003620 396 ----------------------D---DVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 396 ----------------------~---~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
. +..+.+.+..|+||+|.+|..|+..
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 0 1124677889999999999988753
No 95
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.7e-15 Score=160.25 Aligned_cols=177 Identities=26% Similarity=0.456 Sum_probs=126.8
Q ss_pred ccccccccchhhHH---HhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 477 NVSWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~vk---~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+-++++++|++++. +-|..+++. ..-.+++|||||||||||||+++|+..+..|..+++-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 45678888988764 223333331 12245999999999999999999999999999998743
Q ss_pred cccCCchHHHHHHHHHHhcCC----CeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecC--
Q 003620 554 MWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 627 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aT-- 627 (807)
.+-+.++.+|++|++.. ..|||+|||+.+-.. -+..||-.|+ ++.+++||||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 35688999999996543 479999999998542 2344666665 5667888877
Q ss_pred CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh--ccCCCC------ccccHHHHHHHcCCCCHHhHHHHHHHH
Q 003620 628 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL--RKSPVS------KDVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 628 n~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~--~~~~~~------~~~dl~~la~~t~g~sgadi~~l~~~A 698 (807)
|....|.+|+++ |.. ++.+.+.+.++..++++..+ .+.++. ++.-++.++..++| |.+.+++..
T Consensus 142 NPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~L 213 (436)
T COG2256 142 NPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLL 213 (436)
T ss_pred CCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHH
Confidence 666789999998 774 78888899999999998843 222333 22235667766665 766655443
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=1e-15 Score=152.29 Aligned_cols=182 Identities=27% Similarity=0.441 Sum_probs=118.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
..+.+-+++++.|+++.+..++-++....... .+..+++||||||+||||||+.||++++..+..++++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 35678899999999999999877766532221 2345799999999999999999999999999999886542
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----C-----------Cc
Q 003620 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-----------RA 343 (807)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-----------~~ 343 (807)
. ...+..++.... ...||||||||.+.. ...+.|+..|+... . -.
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 122333444332 356999999998842 23456777776432 1 13
Q ss_pred eEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 003620 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 344 ~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (807)
++.+||||++...+.+.|+. ||.....+..++.++-.+|++...+.+.+. ++....++|.++.|-
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 68999999999999999998 998888899999999999998665554443 233467788877774
No 97
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=9.3e-16 Score=181.57 Aligned_cols=198 Identities=22% Similarity=0.265 Sum_probs=140.1
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEEeC
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v~~ 548 (807)
.++.+.|-+...+.+.+.+.. ....++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 344566666555555554332 223568999999999999999999864 445666666
Q ss_pred cccc--ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEec
Q 003620 549 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (807)
Q Consensus 549 ~~l~--~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~a 626 (807)
..++ .+|.|+.+..++.+|+.+.+..++||||||||.|++.++.+. ....+.+.|...+ ....+.+|||
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEec
Confidence 6655 578899999999999999888889999999999988653221 1122222222222 3567999999
Q ss_pred CCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccH-----HHHHHHcCC-----CCHHhH
Q 003620 627 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDL-----RALAKYTQG-----FSGADI 691 (807)
Q Consensus 627 Tn~~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl-----~~la~~t~g-----~sgadi 691 (807)
||.++ .+|+|+.| ||+ .|+++.|+.+++..||+.+..++....++++ ...+..+.. +-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99865 57999999 996 7999999999999999988766544444443 333443433 344477
Q ss_pred HHHHHHHHHH
Q 003620 692 TEICQRACKY 701 (807)
Q Consensus 692 ~~l~~~A~~~ 701 (807)
..++.+|+..
T Consensus 399 idlldea~a~ 408 (758)
T PRK11034 399 IDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHh
Confidence 7788888753
No 98
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.3e-14 Score=166.70 Aligned_cols=157 Identities=24% Similarity=0.371 Sum_probs=105.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEEEechhhh
Q 003620 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPEIM 279 (807)
Q Consensus 210 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~l~ 279 (807)
+|+.++.++.+.+++.- ...++-+|+|.||+|||.++.-+++..- ..++.++-..+.
T Consensus 189 igr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred cCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 45557777777766644 2236789999999999999999987651 234445443332
Q ss_pred --hhhhchhHHHHHHHHHHHH-hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC--
Q 003620 280 --SKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 354 (807)
Q Consensus 280 --~~~~g~~~~~l~~vf~~a~-~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~-- 354 (807)
.++.|+.+.+++.+...+. .....|||+||++-+....... +. ....+++.....++.+-+||||..-
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-~~------~d~~nlLkp~L~rg~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-GA------IDAANLLKPLLARGGLWCIGATTLETY 328 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-hH------HHHHHhhHHHHhcCCeEEEecccHHHH
Confidence 4677889999999999988 4466789999999998765441 11 1112223222344558899887732
Q ss_pred ---CCCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 355 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 355 ---~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
-.-+|++.+ ||+. +.++.|+.+.-..||....
T Consensus 329 ~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 329 RKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLS 363 (898)
T ss_pred HHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhh
Confidence 234899988 8854 6788998877666665443
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.63 E-value=1e-14 Score=147.36 Aligned_cols=193 Identities=25% Similarity=0.400 Sum_probs=143.7
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~v 556 (807)
+-.|++.+|++++|++|.-.+.......+ ..-++|||||||.||||||..+|++++.++-..+|+-+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e--------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGE--------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCC--------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 45789999999999999877765443333 33469999999999999999999999999998888876
Q ss_pred CCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC----------------CCCc
Q 003620 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 620 (807)
Q Consensus 557 g~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~ 620 (807)
+....+..++...... +|+|||||+++.+. ..+ .|.-.|+.+. +..+
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE---~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEE---VLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHH---HhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2345566677666555 69999999998542 222 2333444431 2357
Q ss_pred EEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHH
Q 003620 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 621 vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~ 699 (807)
+.+||||.+.-.|...|.. ||..+..+..++.++..+|++...+.+.+.-+.+ ..++|+++-| |++=-..+++..-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8999999999999888876 9999999999999999999999988876653333 5778888776 4433334444443
Q ss_pred HHH
Q 003620 700 KYA 702 (807)
Q Consensus 700 ~~a 702 (807)
-.|
T Consensus 229 Dfa 231 (332)
T COG2255 229 DFA 231 (332)
T ss_pred HHH
Confidence 333
No 100
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=1.4e-14 Score=160.77 Aligned_cols=222 Identities=22% Similarity=0.304 Sum_probs=145.8
Q ss_pred ccchhhHHHhhHhhhcCCCCchhh-hhh-ccc-CCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-ccccCC
Q 003620 483 IGGLENVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGE 558 (807)
Q Consensus 483 i~g~~~vk~~l~~~v~~~~~~~~~-~~~-~~~-~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~vg~ 558 (807)
|.|++.+|+.|...+..+.+.... ... -.. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 889999999997665322111100 000 011 1345699999999999999999999999999999998875 478888
Q ss_pred chHH-HHHHHHHH----hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCCcEE
Q 003620 559 SEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 622 (807)
Q Consensus 559 se~~-i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vi 622 (807)
.... +..+++.+ ....++||||||||.+..++.+.....+-....+++.||+.|++-. +....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 6444 45555432 2346789999999999876433222222233568899999998631 123456
Q ss_pred EEecCCCCCC----------------------------------------------------CCccccCCCCcceeEEec
Q 003620 623 IIGATNRPDI----------------------------------------------------IDPALLRPGRLDQLIYIP 650 (807)
Q Consensus 623 vi~aTn~~~~----------------------------------------------------ld~allrpgRfd~~i~~~ 650 (807)
+|.|+|-... +.|+++ ||+|.+++|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 6777665110 123333 6999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCCccc---cHHHHHHH--cCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 651 LPDEDSRHQIFKA----CLR-------KSPVSKDV---DLRALAKY--TQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 651 ~p~~~~r~~Il~~----~~~-------~~~~~~~~---dl~~la~~--t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
+.+.++..+|+.. .++ ...+.-.. -+..|++. ..++-.+.|+.++.......+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999973 332 12222111 25667765 345556788888877777666544
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-14 Score=160.84 Aligned_cols=165 Identities=28% Similarity=0.436 Sum_probs=129.6
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc--------
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------- 552 (807)
+|..||+++|+++.+.+...... |-..++-++|+||||+|||++++.+|..++..|++++-.-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56789999999999988643221 222334489999999999999999999999999998754432
Q ss_pred -ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC-------------CCCC
Q 003620 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-------------MSAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~-------------~~~~ 618 (807)
..|+|.....+-+..+...-..| +++|||||.+.. +.. ++ .. +.||..||- --+.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~q-GD----Pa---sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQ-GD----PA---SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCC-CC----hH---HHHHHhcChhhccchhhhccccccch
Confidence 46999999999999999988888 888999999973 222 12 11 234444442 1235
Q ss_pred CcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc
Q 003620 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR 666 (807)
Q Consensus 619 ~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~ 666 (807)
.+|++|||.|..+.|.++|+. |+. +|.++-+..++..+|-+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 689999999999999999998 996 899999999999999999883
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.9e-14 Score=173.70 Aligned_cols=164 Identities=23% Similarity=0.333 Sum_probs=124.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (807)
+++.|+++.++.|.+++..+.... -..+..+||+||||||||++|++||+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458999999999998877543221 12345799999999999999999999999999888754321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcc-----c--------CCceE
Q 003620 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (807)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..|+.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24566666777778887766666 89999999998643221 124566665531 1 11478
Q ss_pred EEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 346 iVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
++|+|||.++.+++++++ || ..|+++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999998 88 478999999999999998664
No 103
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.5e-14 Score=159.67 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=148.0
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc--------
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------- 552 (807)
.|..|++++|+++.+++....... -....-+||+||||+|||+|++.+|..++..|++++..-+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 457799999999999876422111 11112389999999999999999999999999999765443
Q ss_pred -ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCC-------------CCC
Q 003620 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-------------~~~ 618 (807)
..|+|.....+-+-+.+|....| ++++||||.+...-. ++.. +.||.-||-- .+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 46999999999999999999888 889999999975421 1212 2344444421 235
Q ss_pred CcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc-----cCCCCccccHHHHHHHcCCCCHHhHHH
Q 003620 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR-----KSPVSKDVDLRALAKYTQGFSGADITE 693 (807)
Q Consensus 619 ~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~-----~~~~~~~~dl~~la~~t~g~sgadi~~ 693 (807)
.+|++|+|.|..+.|...|+. |+. +|.++-++.++..+|-+.|+= ..++..+ --.|+..-|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~~ 532 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIKD 532 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHHH
Confidence 689999999999999999998 996 999999999999999999882 2233211 11255566667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003620 694 ICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 694 l~~~A~~~a~~~~~~~~~~ 712 (807)
+++.....|=-|++++.+.
T Consensus 533 iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 533 IIRYYTREAGVRNLEREIA 551 (782)
T ss_pred HHHHHhHhhhhhHHHHHHH
Confidence 7666666665555555543
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.58 E-value=2.7e-14 Score=154.93 Aligned_cols=176 Identities=27% Similarity=0.418 Sum_probs=130.0
Q ss_pred cccchhhHHHhhHhhhcCCCCchhhhhhc-ccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-ccccC-C
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 558 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~~~~~-~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~vg-~ 558 (807)
.|.|++++|+.+...+............+ .-.+++++||+||||||||++|+++|..++.+|+.+++..+. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999999877665322111110111 112457899999999999999999999999999999999887 47998 5
Q ss_pred chHHHHHHHHHHh-------------------------------------------------------------------
Q 003620 559 SEANVREIFDKAR------------------------------------------------------------------- 571 (807)
Q Consensus 559 se~~i~~~f~~a~------------------------------------------------------------------- 571 (807)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 7787888877760
Q ss_pred ------------------------------------------------------------------------cCCCeEEE
Q 003620 572 ------------------------------------------------------------------------QSAPCVLF 579 (807)
Q Consensus 572 ------------------------------------------------------------------------~~~p~ilf 579 (807)
.....|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--------CCCcEEEEecCC----CCCCCCccccCCCCcceeE
Q 003620 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 647 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~vivi~aTn----~~~~ld~allrpgRfd~~i 647 (807)
|||||.++.+.++...+ -....|+..||..|+|-. +..++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~D--vS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGAD--VSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCC--CCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 99999999765332222 234558999999999832 346788888764 4555656665 7999999
Q ss_pred EecCCCHHHHHHHH
Q 003620 648 YIPLPDEDSRHQIF 661 (807)
Q Consensus 648 ~~~~p~~~~r~~Il 661 (807)
.+..++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999998
No 105
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2e-14 Score=163.16 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=137.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|++|+|++++++.|.+.+... +.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 467999999999999999887632 22345899999999999999999998865
Q ss_pred --------------eEEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHH
Q 003620 542 --------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 542 --------------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
.++.+++.. ..+...++++.+.+. .....|+||||+|.|. ..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NH 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HH
Confidence 233333321 112345666666543 3446899999999983 34
Q ss_pred HHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccc-cHHHHHHH
Q 003620 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-dl~~la~~ 682 (807)
..|.||..|+. ...++++|.+||.++.|.+.+++ |+ ..+.|+.++.++..+.++..+.+.++..+. .+..|++.
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999886 34567788888889999999987 88 589999999999999998887665554332 36677777
Q ss_pred cCCCCHHhHHHHHHHHHH
Q 003620 683 TQGFSGADITEICQRACK 700 (807)
Q Consensus 683 t~g~sgadi~~l~~~A~~ 700 (807)
++| +.++..+++..+..
T Consensus 215 A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 215 AQG-SMRDALSLTDQAIA 231 (700)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 765 66677777766543
No 106
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=5.2e-14 Score=161.68 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=136.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|++|+|++++++.|...+... +.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 457999999999999998876531 22345899999999999999999998754
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++..+ ......++.+.+.+.. ....|+||||+|.|. ....|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 233343321 1123456666666542 345799999999983 2457888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ..++.+|.+||.++.|.+.+++ |+ ..+.|..++.++..++|+..+.+..+. ++..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888753 3467778888888899888887 88 589999999999999999988766554 23346778888776 5
Q ss_pred HHhHHHHHHHHHH
Q 003620 688 GADITEICQRACK 700 (807)
Q Consensus 688 gadi~~l~~~A~~ 700 (807)
.++..+++..+..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666554
No 107
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=2.6e-14 Score=144.52 Aligned_cols=181 Identities=25% Similarity=0.411 Sum_probs=136.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.+.+-.|++..|.++.++++.-++....... ....++||+||||.||||||+.||++++..+...+|+.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 4566789999999999999988887654433 34568999999999999999999999999998888877632
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------CCce
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (807)
...+-.++..... .+|+||||||.+.+. +-+-|...|+.+. .-++
T Consensus 91 ------~gDlaaiLt~Le~--~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLEE--GDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCCc--CCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2233344444333 379999999998654 2344556665432 1247
Q ss_pred EEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 003620 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 345 viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (807)
+.+||+|.+...+...|+. ||.....+..++.++-.+|++...+.+.+. ++....++|+++.|.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT 216 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT 216 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC
Confidence 8999999999999999998 999989999999999999998766555443 233466778887775
No 108
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.56 E-value=7.4e-14 Score=166.86 Aligned_cols=226 Identities=20% Similarity=0.314 Sum_probs=152.6
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc--------
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------- 552 (807)
.++.|++++|+.+.+++...... +-.....++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45889999999998876632111 111233599999999999999999999999999888765432
Q ss_pred -ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCC-------------CCC
Q 003620 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-------------~~~ 618 (807)
..|+|.....+.+.+..+....| |+||||||.+...... ...+.||..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 25777777777777777665555 8999999998653211 1234566666531 134
Q ss_pred CcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc-----CCCC---cccc---HHHHHH-HcCCC
Q 003620 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-----SPVS---KDVD---LRALAK-YTQGF 686 (807)
Q Consensus 619 ~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~-----~~~~---~~~d---l~~la~-~t~g~ 686 (807)
.++++|||+|.. .|+|+|+. ||+ +|.++.++.++..+|.+.++.. ..+. -..+ +..+++ .+..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 7899999999999999988831 1111 1111 344443 23334
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhh
Q 003620 687 SGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF 747 (807)
Q Consensus 687 sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~ 747 (807)
-.+.|+..++..+..++.+.+... ......|+.+++.+.+..
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~-------------------~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDK-------------------SLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcC-------------------CCceeeecHHHHHHHhCC
Confidence 456777777776665555543210 011235778887777754
No 109
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=2.9e-14 Score=154.69 Aligned_cols=176 Identities=25% Similarity=0.399 Sum_probs=130.3
Q ss_pred cccchhhHHHhhHhhhcCCCCchhhhhhccc-CCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc-cccC-C
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 558 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~-~~vg-~ 558 (807)
.|.|++++|+.+..++............... ..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3889999999998776432111100001110 12467999999999999999999999999999999998885 7999 5
Q ss_pred chHHHHHHHHHHh-------------------------------------------------------------------
Q 003620 559 SEANVREIFDKAR------------------------------------------------------------------- 571 (807)
Q Consensus 559 se~~i~~~f~~a~------------------------------------------------------------------- 571 (807)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5777888877771
Q ss_pred ---c--------------------------------------------------------------------CCCeEEEE
Q 003620 572 ---Q--------------------------------------------------------------------SAPCVLFF 580 (807)
Q Consensus 572 ---~--------------------------------------------------------------------~~p~ilfi 580 (807)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred eccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--------CCCcEEEEecCC----CCCCCCccccCCCCcceeEE
Q 003620 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~vivi~aTn----~~~~ld~allrpgRfd~~i~ 648 (807)
||||.++.+.+++.. +-....|...||..|+|-. +.+++++||+-. .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~--DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGP--DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCC--CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 999999987543222 2234568999999999832 346788887763 4666667777 69999999
Q ss_pred ecCCCHHHHHHHH
Q 003620 649 IPLPDEDSRHQIF 661 (807)
Q Consensus 649 ~~~p~~~~r~~Il 661 (807)
+..++.++..+||
T Consensus 332 L~~L~~~dL~~IL 344 (443)
T PRK05201 332 LDALTEEDFVRIL 344 (443)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999998
No 110
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=3e-14 Score=172.73 Aligned_cols=165 Identities=21% Similarity=0.352 Sum_probs=125.8
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v~ 547 (807)
-.++++.|.++..+.+.+.+.. +...+++|+||||||||++++++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3567788888765555554332 223469999999999999999999987 67888888
Q ss_pred Ccccc--ccccCCchHHHHHHHHHHhc-CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 548 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~~f~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
...+. .+|.|+.++.++.+|+.+.. ..++||||||+|.+.+.++.. +. ....+.|...| ..+.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcchh----hcCCCeEE
Confidence 87776 56889999999999998644 568999999999998765322 11 12233333333 35688999
Q ss_pred ecCCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC
Q 003620 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 668 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~ 668 (807)
|||+..+ .+|+|+.| ||+ .|+++.|+.+++..|++.+..+.
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9999876 38999999 998 68899999999999998876554
No 111
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=2.4e-14 Score=172.95 Aligned_cols=186 Identities=21% Similarity=0.324 Sum_probs=134.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v 546 (807)
+-.++++.|.++....+.+.+.. ....+++|+||||||||++++.+|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34677888888765555544322 223468999999999999999999876 2457777
Q ss_pred eCcccc--ccccCCchHHHHHHHHHHhc-CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEE
Q 003620 547 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 547 ~~~~l~--~~~vg~se~~i~~~f~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~viv 623 (807)
+...+. .+|.|+.+..++.+|+.++. ..++||||||||.+.+.++... ... +-+.|+..| .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--ccc----HHHHhhHHh----hCCCeEE
Confidence 777665 36889999999999999865 4679999999999988654321 111 223333333 3567889
Q ss_pred EecCCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC----CC-ccccHHHHHHHcCCCCH
Q 003620 624 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP----VS-KDVDLRALAKYTQGFSG 688 (807)
Q Consensus 624 i~aTn~~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~----~~-~~~dl~~la~~t~g~sg 688 (807)
||||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+.+. +. .+..+..++..+.+|-+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 99998643 48999999 996 899999999999999876665432 21 23446777777777643
No 112
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1e-13 Score=156.78 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=124.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++++++.|...+... +.+.++||+|||||||||+|+++|..+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 467999999999999888776532 23456899999999999999999998754
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++. ...-..++.+.+.+... ...|+|+||+|.+.. ..++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHH
Confidence 345554432 11234566666665432 346999999999842 346778
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g 685 (807)
|..|+.. ...+++|++|+.|+.+.+++.+ |+. .+.|++++.++...+++..++..++. .+..+..|++.+.|
T Consensus 138 Lk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 138 LKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8888753 3456666666678889999988 885 89999999999999999888665433 22346777776654
No 113
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=7.1e-14 Score=154.20 Aligned_cols=223 Identities=21% Similarity=0.295 Sum_probs=145.4
Q ss_pred cccchhhHHHhhHhhhcCCCCchhh----hhhcccC-CCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-ccc
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 555 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~----~~~~~~~-~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~ 555 (807)
.|.|++++++.+...+....+.... ....++. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3789999999987765321111000 0000111 134699999999999999999999999999999988765 368
Q ss_pred cCCc-hHHHHHHHHHH----hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCC
Q 003620 556 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 619 (807)
Q Consensus 556 vg~s-e~~i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~ 619 (807)
+|+. +..+..+++.+ ....++||||||||.+..++.+.....+-....+++.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8985 34455555432 2345789999999999876543221112223468889999998642 124
Q ss_pred cEEEEecCCCCC--------------------------C------------------------CCccccCCCCcceeEEe
Q 003620 620 TVFIIGATNRPD--------------------------I------------------------IDPALLRPGRLDQLIYI 649 (807)
Q Consensus 620 ~vivi~aTn~~~--------------------------~------------------------ld~allrpgRfd~~i~~ 649 (807)
+.++|.|+|-.. . +.|+++ ||+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 578888888610 0 223444 699999999
Q ss_pred cCCCHHHHHHHHHHH----hcc-------CCCCccc---cHHHHHHH--cCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 650 PLPDEDSRHQIFKAC----LRK-------SPVSKDV---DLRALAKY--TQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 650 ~~p~~~~r~~Il~~~----~~~-------~~~~~~~---dl~~la~~--t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
.+.+.++..+|+... +++ ..+.-.. -++.|++. ...+-.+.|+.+++...+.++-+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998763 221 1222111 25667765 344556678887777776665543
No 114
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.9e-14 Score=155.04 Aligned_cols=184 Identities=20% Similarity=0.271 Sum_probs=132.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+.+|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|..+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 467999999999999988776531 123458999999999999999999987652
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ......+|++.+.+. .....|+||||+|.+. ...++.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 33333321 112345566555443 3456799999999973 3467888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+. +...+++|.+|+.++.|.+++++ |+. .+.|..++.++..+.++..+.+.++. .+..+..|++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 888875 34577888888889999999998 885 78898888888889898888766554 23346677777665 4
Q ss_pred HHhHHHHHHHH
Q 003620 688 GADITEICQRA 698 (807)
Q Consensus 688 gadi~~l~~~A 698 (807)
.++.-+++..+
T Consensus 216 ~RdAL~lLeq~ 226 (484)
T PRK14956 216 VRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 115
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.54 E-value=5.5e-14 Score=162.20 Aligned_cols=210 Identities=25% Similarity=0.341 Sum_probs=143.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v 546 (807)
..+|+++.|.+...+.++..+..+ .+.++||+||||||||++|+++...+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~-------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP-------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 467899999999988887653221 23569999999999999999998753 3578999
Q ss_pred eCccc-------cccccCCchHH----------------HHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHH
Q 003620 547 KGPEL-------LTMWFGESEAN----------------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 547 ~~~~l-------~~~~vg~se~~----------------i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
++... ....+|..... -...+..|. ..+||||||+.+.. .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~---gG~L~IdEI~~L~~--------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH---GGVLFIDEIGELHP--------------V 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC---CcEEEEechhhCCH--------------H
Confidence 87531 11111110000 001222332 35999999999843 3
Q ss_pred HHHHHHhcccCC---------------------------CCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHH
Q 003620 604 VLNQLLTEMDGM---------------------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 656 (807)
Q Consensus 604 v~~~lL~~ld~~---------------------------~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~ 656 (807)
.++.||..|+.- .+.+-.+|++|||.|+.|+|++.+ |+. .++|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 445555444320 012235666777889999999998 885 78899999999
Q ss_pred HHHHHHHHhccCCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccc
Q 003620 657 RHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSE 735 (807)
Q Consensus 657 r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (807)
+.+|++..+++..+.- +..++.++.++ .+++++.++++.|+..|..+. ...
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--------------------------~~~ 319 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--------------------------RKR 319 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--------------------------CcE
Confidence 9999999998765442 22356666655 389999999999998776542 126
Q ss_pred ccHHHHHHHHhh
Q 003620 736 IKAAHFEESMKF 747 (807)
Q Consensus 736 i~~~~~~~a~~~ 747 (807)
|+.+|++.++..
T Consensus 320 It~~dI~~vl~~ 331 (531)
T TIGR02902 320 ILAEDIEWVAEN 331 (531)
T ss_pred EcHHHHHHHhCC
Confidence 999999999864
No 116
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=1.5e-13 Score=154.72 Aligned_cols=179 Identities=27% Similarity=0.454 Sum_probs=125.9
Q ss_pred cccccccchhhHHHh---hHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccc
Q 003620 478 VSWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~---l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~ 554 (807)
.++++++|++++... |...+... ...+++|+||||||||++|+++|...+..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 467889999888555 66665421 12369999999999999999999999999999987532
Q ss_pred ccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecC--C
Q 003620 555 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 628 (807)
Q Consensus 555 ~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aT--n 628 (807)
....++.+++.+. .....||||||+|.+.. ...+.|+..|+. ..+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 3455667777664 23567999999999743 234556666653 346666654 3
Q ss_pred CCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC-----CCCccccHHHHHHHcCCCCHHhHHHHHHHHH
Q 003620 629 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-----PVSKDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 629 ~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~-----~~~~~~dl~~la~~t~g~sgadi~~l~~~A~ 699 (807)
....+++++++ |+ .++.+++++.++...+++..+... .++ +..+..+++.+.| +.+.+.+++..++
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44578999998 88 689999999999999999887542 222 2235677776643 4455555555544
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=2.5e-13 Score=148.56 Aligned_cols=191 Identities=25% Similarity=0.383 Sum_probs=134.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.+.+..|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 456678999999999999998877542111 134568999999999999999999999999887777654321
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------CCce
Q 003620 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (807)
Q Consensus 281 ~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (807)
...+..++... ..+++|||||+|.+... .+ +.|...|+... .-.+
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~----e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE----EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HH----HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12233444332 34679999999988532 11 22333443221 1134
Q ss_pred EEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHH
Q 003620 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 345 viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.++++.......+. ++..+..++..+.|+. +.+..+++.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 7889999999999999987 898889999999999999998776544332 3335788888888865 444444443
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=6.1e-14 Score=155.05 Aligned_cols=191 Identities=22% Similarity=0.336 Sum_probs=131.1
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE---------------
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF--------------- 543 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~--------------- 543 (807)
.|++|+|++.+++.|+..+..+..+. ..++...+.++||+||||+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999988654332 223444567799999999999999999998764321
Q ss_pred EEEeCccccc--cc-cCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC
Q 003620 544 ISVKGPELLT--MW-FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 544 i~v~~~~l~~--~~-vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
..-+-+++.- .. ..-.-..+|.+++.+... ...|+||||+|.+.. ...|.||..|+.-+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcCC
Confidence 0011111110 00 011234578888877643 347999999999842 34577888887632
Q ss_pred CCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHH
Q 003620 617 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEIC 695 (807)
Q Consensus 617 ~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~ 695 (807)
...++|++|+| ++.|.|++++ |+ ..++|++|+.++..+++.... ++. ......++..+.|..|..+.-+.
T Consensus 146 -~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 146 -PRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred -CCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhc
Confidence 34555555555 8999999988 88 599999999999888876322 333 33466788889988776655443
No 119
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.53 E-value=3.2e-13 Score=146.42 Aligned_cols=187 Identities=23% Similarity=0.350 Sum_probs=130.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhch
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (807)
+|+++.|.++.+++|+.++......+ ..+.+++|+||||||||+|++++|++++..+..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 57899999999999988876432211 33567999999999999999999999998876666543321
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc----------------CCceEEEEE
Q 003620 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 349 (807)
Q Consensus 286 ~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~viVI~ 349 (807)
...+...+... ..+.++||||++.+.+.. .+.|+.+|+... ...++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222222222 346799999999885321 122444443222 113478899
Q ss_pred ecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHHH
Q 003620 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (807)
Q Consensus 350 atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (807)
+|+++..+++++++ ||...+.+..|+.++..++++......... ++..+..+++.+.|+. +.+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 99999999999988 888888999999999999998776543322 3345778888888876 3445555544
No 120
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=8.8e-14 Score=158.52 Aligned_cols=173 Identities=21% Similarity=0.312 Sum_probs=119.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r 590 (807)
..++||||||||||+|++++++++ +..++.+++.++.+.++.........-|..... .+.+|+|||++.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 459999999999999999999987 456888898887765544322222222332222 46799999999986431
Q ss_pred CCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHh
Q 003620 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~---ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~ 665 (807)
.....|+..++.+...+..+||+++..|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+
T Consensus 228 ------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 228 ------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 123345555544434445577777777765 6688776 996 589999999999999999998
Q ss_pred ccCCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 666 RKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 666 ~~~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
...++.- +.-++.||+...| +.++|..++......|..
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 7654432 2236777776654 667777777776655543
No 121
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.8e-13 Score=143.60 Aligned_cols=172 Identities=30% Similarity=0.487 Sum_probs=121.3
Q ss_pred cCCCCCcccccChHHHH---HHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 003620 201 RLDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~---~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
.+.+-++++++|+++.+ .-|+.+++. ..-.+++|||||||||||||+.||+..+..|..++...
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 45677899999998876 335666554 23457999999999999999999999999999998633
Q ss_pred hhhhhhchhHHHHHHHHHHHHhcC----CeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC-
Q 003620 278 IMSKLAGESESNLRKAFEEAEKNA----PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~~~----p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn- 352 (807)
..-+.++.+++.++... ..|||+||||.+-...+ ..|+..+ .++.+++||+|.
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~v----E~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHV----ENGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhh----cCCeEEEEeccCC
Confidence 23567899999985532 47999999998854322 3355555 356778887664
Q ss_pred CC-CCCCHHhhccCccceEEEeCCCChHHHHHHHHHHh--cCCCCC------CchhhhHHhhhcCCC
Q 003620 353 RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT--KNMKLS------DDVDLERIAKDTHGY 410 (807)
Q Consensus 353 ~~-~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~--~~~~~~------~~~~l~~la~~t~g~ 410 (807)
+| -.++++|++ |. +.+++.+.+.++-.++++..+ ....+. ++.-+..++..+.|-
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 44 478999998 43 457888888888888876522 111122 233456666666653
No 122
>PRK04195 replication factor C large subunit; Provisional
Probab=99.51 E-value=1.7e-13 Score=157.26 Aligned_cols=191 Identities=25% Similarity=0.317 Sum_probs=134.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~v 556 (807)
+.+++++.|.+.+++.|.+++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 45789999999999999988753211 1 23577999999999999999999999999999999887532
Q ss_pred CCchHHHHHHHHHHhc------CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC
Q 003620 557 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 557 g~se~~i~~~f~~a~~------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~ 630 (807)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 2233443333322 246799999999986421 11234455555542 223456677888
Q ss_pred CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 631 ~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
..+.+..+| +....|.|++|+..++..+++..+.+.++. .+..+..|++.+. .|++.+++.....+
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh
Confidence 888774445 344689999999999999999988766543 2334677777654 48888888776543
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.51 E-value=1.4e-13 Score=155.04 Aligned_cols=172 Identities=20% Similarity=0.324 Sum_probs=118.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchH-HHHHHHHHHhcCCCeEEEEeccchhhhc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~~f~~a~~~~p~ilfiDEid~l~~~ 589 (807)
..++||||+|+|||+|++++++++ +..++.+++.++...+...... .+....+..+ .+.+|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999986 4678888888876554432211 1222222222 2469999999998643
Q ss_pred cCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHH
Q 003620 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~---ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~ 664 (807)
. .....|+..++.+...+..+||+++..|+. +++.+.+ ||. ..+.+++|+.++|.+|++..
T Consensus 215 ~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 122344444444333445577777777765 4577776 887 57999999999999999999
Q ss_pred hccCCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 665 LRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 665 ~~~~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
++..++.- +..++.||+... -+.+++..++......|..
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 97665442 333677887765 3778888888877666543
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=1.3e-13 Score=167.85 Aligned_cols=184 Identities=21% Similarity=0.356 Sum_probs=134.6
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v~ 547 (807)
-.++.+.|.++..+.+.+.+.. +...+++|+||||||||++++++|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3567788888765555554332 233568999999999999999999875 56778888
Q ss_pred Ccccc--ccccCCchHHHHHHHHHHhcC-CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 548 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~~f~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
...+. .+|.|+.++.++.+|+.+... .++||||||||.|.+.+... +. ..+.+.|...+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~l----~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPAL----ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchhh----hcCceEEE
Confidence 77765 578999999999999998653 58999999999998754321 11 12333333222 45678999
Q ss_pred ecCCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-----cccHHHHHHHcCCCC
Q 003620 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-----DVDLRALAKYTQGFS 687 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-----~~dl~~la~~t~g~s 687 (807)
|+|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+..++.... +..+...+..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9998864 47999999 997 589999999999999998876654432 234566666666654
No 125
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4e-13 Score=157.39 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=131.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE-------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 543 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~------------- 543 (807)
..+|++|.|++.+++.|+..+... +.+..+||+||||||||++|+++|+.+++..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 468999999999999998876531 2234579999999999999999999886531
Q ss_pred -----------EEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 544 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 544 -----------i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
+.+++.+ ......+|.+.+.+. .....|+||||+|.|. ...++.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1122211 012234566555443 3445799999999973 4578889
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+.+|.+|+.+..|.+.+++ |+ .++.|++++.++..+.|+..+....+.. +..+..|++.++| +
T Consensus 140 LKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999863 3455566667777788888887 87 5899999999999999988886654432 2346777777765 5
Q ss_pred HHhHHHHHHHHH
Q 003620 688 GADITEICQRAC 699 (807)
Q Consensus 688 gadi~~l~~~A~ 699 (807)
.+++.++|..|.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 667777776655
No 126
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.4e-13 Score=153.62 Aligned_cols=186 Identities=21% Similarity=0.298 Sum_probs=134.1
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 467999999999999998887521 23456899999999999999999998764
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++++- ..-..+|.+...+.. ....|+||||+|.|.. ...+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHH
Confidence 3444444321 123456666665532 3457999999999732 356778
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+++.++.- +..+..+++.+.| +
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888763 3455666666777778778776 88 5899999999999999998887765543 3346778877765 6
Q ss_pred HHhHHHHHHHHHH
Q 003620 688 GADITEICQRACK 700 (807)
Q Consensus 688 gadi~~l~~~A~~ 700 (807)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777665543
No 127
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.9e-13 Score=147.94 Aligned_cols=185 Identities=21% Similarity=0.296 Sum_probs=131.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+.+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 467999999999999998876531 223458999999999999999999987532
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ......++.+.+.+... ...|+||||+|.+. ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 12234567777665432 34699999999873 2356678
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..++..+.| +
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888763 3355556666778888888876 87 588999999999999999988776543 23346777877765 6
Q ss_pred HHhHHHHHHHHH
Q 003620 688 GADITEICQRAC 699 (807)
Q Consensus 688 gadi~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 ~R~al~~l~~~~ 225 (363)
T PRK14961 214 MRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHHH
Confidence 667666666654
No 128
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=6.7e-13 Score=147.75 Aligned_cols=202 Identities=24% Similarity=0.309 Sum_probs=127.9
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC---------CeEEEEeCccc
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 551 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~---------~~~i~v~~~~l 551 (807)
+++.|-++..+.|...+..... + ..+..++++||||||||+++++++.++. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4567777777777666542111 1 2235699999999999999999998652 46788887654
Q ss_pred ccc----------cc--CC-------c-hHHHHHHHHHHh-cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHh
Q 003620 552 LTM----------WF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (807)
Q Consensus 552 ~~~----------~v--g~-------s-e~~i~~~f~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~ 610 (807)
.+. .. |. + .+....+++... ...+.||+|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 321 10 11 1 223445555543 345789999999999721 1235566655
Q ss_pred cccCC-CCCCcEEEEecCCCCC---CCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccC--C-CCccccHHHHHHH
Q 003620 611 EMDGM-SAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKS--P-VSKDVDLRALAKY 682 (807)
Q Consensus 611 ~ld~~-~~~~~vivi~aTn~~~---~ld~allrpgRfd-~~i~~~~p~~~~r~~Il~~~~~~~--~-~~~~~dl~~la~~ 682 (807)
..+.. ....++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. + .-.+.-+..++..
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 42211 1235788899999886 47788877 775 689999999999999999988631 1 1112123344443
Q ss_pred ---cCCCCHHhHHHHHHHHHHHHHHH
Q 003620 683 ---TQGFSGADITEICQRACKYAIRE 705 (807)
Q Consensus 683 ---t~g~sgadi~~l~~~A~~~a~~~ 705 (807)
+.| ..+.+.++|+.|+..|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 333 2345556788888777654
No 129
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-13 Score=152.52 Aligned_cols=164 Identities=24% Similarity=0.378 Sum_probs=129.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech------hhh--
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 279 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~-- 279 (807)
+|.-||++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|+.++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 57889999999999998764322 234577899999999999999999999999999887643 222
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------------CCceE
Q 003620 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 345 (807)
..|+|....++-+.++....+.| +++|||+|.+........ .+.|+++||.-+ .-++|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCCh-------HHHHHHhcChhhccchhhhccccccchhhe
Confidence 25788888888888888888888 889999999984322221 145666666432 12579
Q ss_pred EEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 346 iVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
++|+|.|..+.|++.|+. |+ ..|+++-+..++...|-+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 77 568999999999999988764
No 130
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=1.1e-13 Score=168.29 Aligned_cols=186 Identities=25% Similarity=0.365 Sum_probs=138.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v 546 (807)
.-.|+.+.|-+...+.+.+.+.. +...+++|+||||||||++|+.+|... +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34578888888888777776542 234579999999999999999999986 3678999
Q ss_pred eCcccc--ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 547 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 547 ~~~~l~--~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
+...++ .+|.|+.+..++.+|+.+....++||||||||.|.+.++.. ++ . .+.+.|...| .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~--~---~~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA--I---DAANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc--c---cHHHHhHHHH----hCCCcEEE
Confidence 988876 58899999999999999988889999999999998765322 11 1 1222222222 25678899
Q ss_pred ecCCCCC-----CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhcc----CCCC-ccccHHHHHHHcCCCCH
Q 003620 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK----SPVS-KDVDLRALAKYTQGFSG 688 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~----~~~~-~~~dl~~la~~t~g~sg 688 (807)
|+|+..+ ..|+++.| ||. .|.++.|+.++...|++..... ..+. .+.-+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9998764 47999999 997 5799999999999998765432 2222 23336777777777754
No 131
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1e-12 Score=152.05 Aligned_cols=185 Identities=21% Similarity=0.323 Sum_probs=133.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|++|+|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 467999999999999998877531 123457999999999999999999987652
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ...-..+|.+.+.+. .....|+||||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 33343321 012234555555443 3456799999999973 3467889
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~s 687 (807)
|..|+.- ...+++|.+|+.++.|.+.+++ |+ ..++|++++.++....|+..++...+..+ ..+..|++.++| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988863 3456666667778888888887 86 68999999999999999988866554432 346677877765 6
Q ss_pred HHhHHHHHHHHH
Q 003620 688 GADITEICQRAC 699 (807)
Q Consensus 688 gadi~~l~~~A~ 699 (807)
.++..+++..|.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 667777776554
No 132
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=7e-13 Score=149.17 Aligned_cols=203 Identities=25% Similarity=0.354 Sum_probs=127.5
Q ss_pred ccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccc--
Q 003620 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT-- 553 (807)
Q Consensus 481 ~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~-- 553 (807)
+.+.|-++..+.|...+..... + ..+..++++||||||||++++.++.++ +..++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 3455555555555554432111 1 223458999999999999999999876 46788888764322
Q ss_pred --------cccC-------Cc-hHHHHHHHHHHhc-CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC
Q 003620 554 --------MWFG-------ES-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 554 --------~~vg-------~s-e~~i~~~f~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
...+ .+ ......+++.... ..+.||+|||+|.+.... ....+..|+..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC
Confidence 1111 11 2223334443332 456899999999997221 1245667766666543
Q ss_pred CCCcEEEEecCCCCC---CCCccccCCCCcc-eeEEecCCCHHHHHHHHHHHhccC--C-CCccccHHHHHHHcCCCCH-
Q 003620 617 AKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKS--P-VSKDVDLRALAKYTQGFSG- 688 (807)
Q Consensus 617 ~~~~vivi~aTn~~~---~ld~allrpgRfd-~~i~~~~p~~~~r~~Il~~~~~~~--~-~~~~~dl~~la~~t~g~sg- 688 (807)
. .++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++.. + .-.+..++.+++.+.+.+|
T Consensus 171 ~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 G-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred C-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2 3688888888764 46777665 663 678999999999999999888542 1 1123336777777755444
Q ss_pred -HhHHHHHHHHHHHHHHH
Q 003620 689 -ADITEICQRACKYAIRE 705 (807)
Q Consensus 689 -adi~~l~~~A~~~a~~~ 705 (807)
+.+..+|..|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 33346777777776654
No 133
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=9.8e-13 Score=149.35 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=138.7
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe-------------
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 542 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~------------- 542 (807)
.+.+|+++.|++.+.+.|...+... +.+.++||+||+|||||++|+++|+.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 3567999999999999988765421 234579999999999999999999988642
Q ss_pred ---------------EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHH
Q 003620 543 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 543 ---------------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
++.+++.. ..+...++.+.+.+... ...|+||||+|.+. ..
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KG 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HH
Confidence 12222111 12345788888877644 34699999999873 24
Q ss_pred HHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHH
Q 003620 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~ 682 (807)
.++.||..|+.. ...+++|.+|+.++.+.+++.+ |+ ..+.|++++.++...+++..+++.++.-+ ..+..+++.
T Consensus 144 a~naLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 577788888753 3456666667778889998887 88 57889999999999999999987665422 346778887
Q ss_pred cCCCCHHhHHHHHHHHHHHH
Q 003620 683 TQGFSGADITEICQRACKYA 702 (807)
Q Consensus 683 t~g~sgadi~~l~~~A~~~a 702 (807)
++| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 765 7778888887776544
No 134
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.6e-13 Score=150.11 Aligned_cols=184 Identities=22% Similarity=0.350 Sum_probs=131.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++++++.|...+... ..+..+||+|||||||||+|+++|..+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 468999999999999998877631 22344799999999999999999998743
Q ss_pred --------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHH
Q 003620 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 542 --------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
.++.+++++ ..+...++.+.+.+.. ..+.|+||||+|.+. ...++.||
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 134444321 1123456666555443 346799999998752 34577888
Q ss_pred hcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCCH
Q 003620 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (807)
Q Consensus 610 ~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~sg 688 (807)
..|+.. ...+++|.+||.++.+.+.+.+ |+. .+.|++|+.++....++..+++.++.- +..+..+++.+.| +-
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888763 3456666677888899999887 875 799999999999999999887766542 3346777777764 33
Q ss_pred HhHHHHHHHH
Q 003620 689 ADITEICQRA 698 (807)
Q Consensus 689 adi~~l~~~A 698 (807)
+++.++++.+
T Consensus 212 R~aln~Lekl 221 (504)
T PRK14963 212 RDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH
Confidence 4444555444
No 135
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=6.9e-13 Score=149.36 Aligned_cols=203 Identities=11% Similarity=0.200 Sum_probs=127.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
.+++||||+|+|||+|++++++++ +..++.++..++...+.......-...|..... .+.+|+|||++.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 569999999999999999999876 567888888776554432211111233554433 45799999999985431
Q ss_pred CCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhcc
Q 003620 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRK 667 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~---ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~~~ 667 (807)
. ....|+..++.+...++.+|+++++.|.. +++.+.+ ||. ..+.+++|+.++|.+|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 12223333332222334566666666654 5788887 996 88999999999999999999877
Q ss_pred CCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHh
Q 003620 668 SPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMK 746 (807)
Q Consensus 668 ~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~ 746 (807)
.++.-+.+ ++.+|....+ +.++|.+.+...+.......+. ...||.+...+++.
T Consensus 287 ~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~------------------------~~~i~~~~~~~~l~ 341 (445)
T PRK12422 287 LSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS------------------------HQLLYVDDIKALLH 341 (445)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh------------------------CCCCCHHHHHHHHH
Confidence 65543333 4556665542 4455555555553222211111 12577777777777
Q ss_pred hc---CC--CCCHHHHH
Q 003620 747 FA---RR--SVSDADIR 758 (807)
Q Consensus 747 ~~---~~--s~~~~~~~ 758 (807)
.+ .+ .+|.++|.
T Consensus 342 ~~~~~~~~~~~t~~~I~ 358 (445)
T PRK12422 342 DVLEAAESVRLTPSKII 358 (445)
T ss_pred HhhhcccCCCCCHHHHH
Confidence 54 22 47777764
No 136
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4.8e-13 Score=152.91 Aligned_cols=187 Identities=20% Similarity=0.263 Sum_probs=134.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+-+|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 457999999999999999887531 233458999999999999999999987542
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ......+|++.+.+.. ....|+||||+|.+.. ..++.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHHH
Confidence 45554432 1233456776665542 3457999999999842 357888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+..+ ..+.+|.+|+.++.+.+.+++ |+ ..+.|.+++.++..+.++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 88888643 345555666677777777776 77 577899999988888888888766554 23346778877764 6
Q ss_pred HHhHHHHHHHHHHH
Q 003620 688 GADITEICQRACKY 701 (807)
Q Consensus 688 gadi~~l~~~A~~~ 701 (807)
.+++.+++..+..+
T Consensus 214 lR~al~lLdq~ia~ 227 (509)
T PRK14958 214 VRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHHhc
Confidence 77888888766543
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.9e-12 Score=150.09 Aligned_cols=187 Identities=25% Similarity=0.362 Sum_probs=136.9
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++++++.|+..+... +.+..+||+||+|||||++|+.+|..+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 467999999999999998887531 23455899999999999999999998642
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
+++.++++. +.+...++.+...+.. ....|+||||+|.+. ...++.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 344444421 2334567888777653 335799999999873 2357888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.|+.|.+.+++ |+. .+.|++|+.++...+++..+++.++.-+ ..+..++..+.| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888864 3355555566778899999887 885 6789999999999999998877665432 346777877765 6
Q ss_pred HHhHHHHHHHHHHH
Q 003620 688 GADITEICQRACKY 701 (807)
Q Consensus 688 gadi~~l~~~A~~~ 701 (807)
.+++.+++..+..+
T Consensus 214 ~R~al~~Ldq~~~~ 227 (559)
T PRK05563 214 MRDALSILDQAISF 227 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777666543
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=6.1e-13 Score=150.19 Aligned_cols=172 Identities=17% Similarity=0.275 Sum_probs=114.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCch-HHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~~f~~a~~~~p~ilfiDEid~l~~~ 589 (807)
.+++||||+|||||+|++++|+++ +..++.+++.++...+..... ..+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999985 356788888887665432211 12222 33333335789999999998653
Q ss_pred cCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHH
Q 003620 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRfd--~~i~~~~p~~~~r~~Il~~~ 664 (807)
. .....|+..++.+...+..+|+++++.|+.+ ++.+.+ ||. ..+.+.+||.+.|.+|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 1223344444443334456777777777664 566766 774 67889999999999999999
Q ss_pred hccCCCCcc-ccHHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 665 LRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 665 ~~~~~~~~~-~dl~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
++..++.-+ .-+..||+...| +.++|..++......+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 875443322 226777776654 66777777776654443
No 139
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.1e-13 Score=151.20 Aligned_cols=166 Identities=25% Similarity=0.342 Sum_probs=130.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech------hhh
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM 279 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~ 279 (807)
--.|.-|+++.+++|.|++......+. ..+.-++|+||||+|||+|++.||..++..|+.++-. ++.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~-------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKK-------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhcc-------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 345788999999999999876332221 3345699999999999999999999999999888643 332
Q ss_pred ---hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------------CCc
Q 003620 280 ---SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRA 343 (807)
Q Consensus 280 ---~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~ 343 (807)
..|.|....++-+-+..+....| ++++||||.+..+-..... +.|++.||.-+ .-+
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchh
Confidence 25788888888888889988888 8899999999876443332 44666665322 125
Q ss_pred eEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 344 ~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
.|++|+|.|..+.|+..|+. |+ ..|+++-+++.+..+|.+.|+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 79999999999999999987 77 568999999999999998774
No 140
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.6e-12 Score=149.61 Aligned_cols=187 Identities=19% Similarity=0.276 Sum_probs=135.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|++|+|++.+++.|+..+... +.+.++||+||+|||||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 467999999999999999887631 234569999999999999999999986532
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. +.+...++.+++.+.. ....|+||||+|.+. ...++.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 22222211 2234567777776533 334799999999862 3457788
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~s 687 (807)
|..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++...+++..+++.++.- +..+..|++.+. -+
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gs 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GS 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CC
Confidence 88888643 455666677778888887775 87 4788889999999999999998766542 233677887775 46
Q ss_pred HHhHHHHHHHHHHH
Q 003620 688 GADITEICQRACKY 701 (807)
Q Consensus 688 gadi~~l~~~A~~~ 701 (807)
.+++.+++..+..+
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888888776654
No 141
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.7e-12 Score=146.24 Aligned_cols=187 Identities=20% Similarity=0.268 Sum_probs=137.4
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+|++|++.+++.|...+... +.+.++||+||+|+||||+|+++|..+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 468999999999999998776531 23457999999999999999999986532
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++++- .+-..+|.+.+.+... ...|++|||+|.+. ...++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 3455555421 2345677777776543 34699999999873 2457888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+..+ ..+++|.+|+.++.|.+.+++ |+ ..+.|.+++.++..+.++..+.+.++. ++..+..|++.++| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 98888643 356666666777788888887 77 478999999999999999988776544 23346777777764 7
Q ss_pred HHhHHHHHHHHHHH
Q 003620 688 GADITEICQRACKY 701 (807)
Q Consensus 688 gadi~~l~~~A~~~ 701 (807)
.+++.+++..+..+
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777776654
No 142
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=3.9e-12 Score=147.11 Aligned_cols=187 Identities=19% Similarity=0.306 Sum_probs=132.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 457999999999999999877632 22345899999999999999999998764
Q ss_pred --------------eEEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHH
Q 003620 542 --------------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 542 --------------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
.++.+++.. ...-..++++.+.+... ...|++|||+|.+.. .
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------T 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------H
Confidence 123332221 11234577777665433 246999999999742 3
Q ss_pred HHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHH
Q 003620 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~ 682 (807)
.+|.||..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|..++.++..+.++..+++.++.-+ ..+..|++.
T Consensus 140 a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 478888888863 3455555566667778777776 87 68999999999999999988876655433 346778887
Q ss_pred cCCCCHHhHHHHHHHHHHH
Q 003620 683 TQGFSGADITEICQRACKY 701 (807)
Q Consensus 683 t~g~sgadi~~l~~~A~~~ 701 (807)
+.| +.+++.+++..+...
T Consensus 215 s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 215 ARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred cCC-CHHHHHHHHHHHHHh
Confidence 775 666777766555433
No 143
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=2.1e-12 Score=140.70 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=122.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-----CeEEEEeCccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l 551 (807)
+.+++++.|.+++.+.|+..+... ...++||+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 457899999999999888765421 113599999999999999999999872 34667776654
Q ss_pred cccccCCchHHHHHHHHH---Hh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 552 LTMWFGESEANVREIFDK---AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~---a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
.+ ...++..... .. ...+.|++|||+|.+... ..+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcccC--CceEE
Confidence 22 1233333222 11 124679999999998431 23445555554322 23455
Q ss_pred ecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHH
Q 003620 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 625 ~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~ 699 (807)
.+||.++.+.+++.+ |+ ..+.|++|+.++....++..+++.++. .+..+..+++.+.| |++.+++...
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 567777888888887 77 489999999999999999888765543 23346777776553 6666655543
No 144
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=5.2e-12 Score=131.18 Aligned_cols=209 Identities=21% Similarity=0.384 Sum_probs=132.8
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCe---EEEEeCccccccccCCchHHHHHHHHHHhc-----CCCeEEEEeccchhh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIA 587 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~---~i~v~~~~l~~~~vg~se~~i~~~f~~a~~-----~~p~ilfiDEid~l~ 587 (807)
.+++|+||||||||+||+.++...+.+ |+.+++.. ...+.+|.+|+.+.. ....|||||||+.+.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 359999999999999999999988765 77776643 345679999998865 345799999999975
Q ss_pred hccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecC--CCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHh
Q 003620 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aT--n~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~ 665 (807)
... ...||-.++ .+.|++|||| |....|+.||++ |+- ++.......++...||.+-.
T Consensus 236 ksQ--------------QD~fLP~VE----~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPHVE----NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhcccceec----cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 421 234554443 5567888877 556689999998 885 55566667777777877643
Q ss_pred c------c--CCCCc------cccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccc
Q 003620 666 R------K--SPVSK------DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAED 731 (807)
Q Consensus 666 ~------~--~~~~~------~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (807)
. + .++.. +.-++.++..++|=.-+.+..+--.+.+.+.+... .
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~-----------------------~ 351 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQ-----------------------S 351 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCC-----------------------c
Confidence 2 1 02221 22257777777763332222222222222222110 0
Q ss_pred ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcccCCCc
Q 003620 732 EVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGS 775 (807)
Q Consensus 732 ~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~ 775 (807)
....++.+|+.++++.-.--....--+.|.-+..-.+++||.-.
T Consensus 352 ~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~ 395 (554)
T KOG2028|consen 352 SRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQ 395 (554)
T ss_pred ccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCcc
Confidence 12368889999988765433444444667777666666665443
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=147.98 Aligned_cols=172 Identities=14% Similarity=0.274 Sum_probs=115.6
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r 590 (807)
..++|||++|||||+|++++++++ +..+++++..++.+.++..........|.+-.. .+++|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999986 457789999888776654333323334544333 35799999999986532
Q ss_pred CCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCC---CCCccccCCCCcc--eeEEecCCCHHHHHHHHHHHh
Q 003620 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~---~ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~ 665 (807)
.....|+..++.+...++-+||++...|. .+++.|.+ ||. .++.+..||.+.|.+||+.++
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 11223333343333333445554444444 46788887 885 677899999999999999998
Q ss_pred ccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 666 RKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 666 ~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
+...+.-+.+ +..|+....+ +-++|..++......+.
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 7766553333 5667766543 56777777776654444
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.42 E-value=3.7e-12 Score=140.19 Aligned_cols=190 Identities=23% Similarity=0.351 Sum_probs=122.7
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-----CeEEEEeCccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l 551 (807)
+.+|+++.|.+.+++.|...+..+ ...+++|+||||||||++|++++.++. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 456889999999999998876531 112599999999999999999999873 35678887765
Q ss_pred cccc-------------cCC-------chHHHHHHHHHHhc-----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHH
Q 003620 552 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 552 ~~~~-------------vg~-------se~~i~~~f~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
...+ .+. ....++.+.+.... ..+.+||+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 4221 111 01223333333322 2346999999998732 2233
Q ss_pred HHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCC
Q 003620 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g 685 (807)
.|+..|+.... ...+|+ +|+.+..+.+.+.+ |+ ..+.+++|+.++..++++..+++.++. .+..+..+++.+.
T Consensus 144 ~L~~~le~~~~-~~~~Il-~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~- 217 (337)
T PRK12402 144 ALRRIMEQYSR-TCRFII-ATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG- 217 (337)
T ss_pred HHHHHHHhccC-CCeEEE-EeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 44555554332 234444 45555666677765 76 478999999999999999988776544 2334677777653
Q ss_pred CCHHhHHHHHHHHHHHH
Q 003620 686 FSGADITEICQRACKYA 702 (807)
Q Consensus 686 ~sgadi~~l~~~A~~~a 702 (807)
.|++.+++.....+
T Consensus 218 ---gdlr~l~~~l~~~~ 231 (337)
T PRK12402 218 ---GDLRKAILTLQTAA 231 (337)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 46776666554433
No 147
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=2.3e-12 Score=152.32 Aligned_cols=181 Identities=25% Similarity=0.398 Sum_probs=120.5
Q ss_pred ccccccccchhhHHH---hhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc
Q 003620 477 NVSWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~---~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~ 553 (807)
+-+++++.|++++.. .|+..+.. ....+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356788999988764 45444431 112468999999999999999999999999988876531
Q ss_pred cccCCchHHHHHHHHHHh-----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCC
Q 003620 554 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn 628 (807)
..+.++.++..+. .....+|||||||.+.. ...+.|+..++. ..+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE~----g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVEN----GTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhcC----ceEEEEEecC
Confidence 1233444444432 12456999999999743 123455555542 4566666653
Q ss_pred --CCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhc-------cCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHH
Q 003620 629 --RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR-------KSPVS-KDVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 629 --~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~-------~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A 698 (807)
....+++++++ |+ ..+.|++++.+++..|++..+. ...+. .+.-+..|++.+.| +.+++.+++..|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33568899987 75 4789999999999999999886 22222 12236777776643 445555555555
Q ss_pred H
Q 003620 699 C 699 (807)
Q Consensus 699 ~ 699 (807)
+
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 4
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=3.5e-12 Score=141.40 Aligned_cols=187 Identities=23% Similarity=0.346 Sum_probs=132.9
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC--------------
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 541 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~-------------- 541 (807)
.+..|+++.|.+.+++.|.+.+... ..+..+||+||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3568999999999999998877531 23346899999999999999999988642
Q ss_pred ----------eEEEEeCccccccccCCchHHHHHHHHHHhcCC----CeEEEEeccchhhhccCCCCCCCCchHHHHHHH
Q 003620 542 ----------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++.+ ......++.+++.+...+ ..|+++||+|.+. ....+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHH
Confidence 233343321 123446778888765432 3699999998873 235677
Q ss_pred HHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCC
Q 003620 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~ 686 (807)
||..|+.. ...+++|.+|+.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++.- +..+..+++.+.|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888763 3356666677888888888887 884 789999999999999999887765432 2335667776654
Q ss_pred CHHhHHHHHHHHHH
Q 003620 687 SGADITEICQRACK 700 (807)
Q Consensus 687 sgadi~~l~~~A~~ 700 (807)
+.+.+.+.+..+..
T Consensus 211 ~~~~a~~~lekl~~ 224 (355)
T TIGR02397 211 SLRDALSLLDQLIS 224 (355)
T ss_pred ChHHHHHHHHHHHh
Confidence 55555555555544
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.4e-12 Score=152.49 Aligned_cols=185 Identities=19% Similarity=0.248 Sum_probs=129.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|++|+|++.+++.|+..+... +....+||+||+|||||++|++||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 468999999999999998876531 233458999999999999999999988541
Q ss_pred ------------EEEEeCccccccccCCchHHHHHHHHH----HhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHH
Q 003620 543 ------------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 543 ------------~i~v~~~~l~~~~vg~se~~i~~~f~~----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
|+.+++... ..-..+|++-+. .......|+||||+|.|. ....|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHH
Confidence 233333211 012334444332 334556899999999983 34578
Q ss_pred HHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCC
Q 003620 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g 685 (807)
.||+.|+... ..+++|.+|+.++.|-+.+.+ |+ .++.|..++.++..++|+..+++.++.-+ ..+..+++.+.|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888643 355666666778888888876 77 48899999999999999998877665432 235666666654
Q ss_pred CCHHhHHHHHHHHH
Q 003620 686 FSGADITEICQRAC 699 (807)
Q Consensus 686 ~sgadi~~l~~~A~ 699 (807)
+-+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 5556666555544
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.6e-12 Score=148.02 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=131.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|++|.|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 467999999999999999887531 23345899999999999999999998653
Q ss_pred -----------eEEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHH
Q 003620 542 -----------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 542 -----------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
.++.++++.. .+-..++++-+.+. .....|+||||+|.+. ....+
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 1333333211 12234555444432 3345799999999973 23678
Q ss_pred HHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCC
Q 003620 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g 685 (807)
.||..|+.. ...+++|.+|+.++.|.+++.+ |+ ..+.|..++.++..+.++..+++.++.-+ ..+..+++.+.
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~- 210 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG- 210 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 889988863 3466667777778888888887 75 58999999999999999888877664432 23555666554
Q ss_pred CCHHhHHHHHHHHHHH
Q 003620 686 FSGADITEICQRACKY 701 (807)
Q Consensus 686 ~sgadi~~l~~~A~~~ 701 (807)
-+.+++.+++..++..
T Consensus 211 GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 211 GSPRDTLSVLDQLLAG 226 (584)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4666777777765543
No 151
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.5e-12 Score=147.59 Aligned_cols=182 Identities=19% Similarity=0.280 Sum_probs=125.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|++|.|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 568999999999999998877531 123469999999999999999999987642
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHH----hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ...++.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 344433211 1122344433322 23445799999999973 3356888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+||.++.+.+.+++ |+. .+.|+.++.++...+|+..+.+..+. .+..+..+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888763 3457777778888888888776 874 78999999999999998888765543 23346777776654 3
Q ss_pred HHhHHHHHH
Q 003620 688 GADITEICQ 696 (807)
Q Consensus 688 gadi~~l~~ 696 (807)
.+++.+++.
T Consensus 214 lR~Al~lLe 222 (624)
T PRK14959 214 VRDSMSLLG 222 (624)
T ss_pred HHHHHHHHH
Confidence 334444443
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.40 E-value=7.7e-12 Score=126.50 Aligned_cols=193 Identities=25% Similarity=0.390 Sum_probs=136.0
Q ss_pred eccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcc
Q 003620 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 550 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~ 550 (807)
....+.++++.|++..|+.|.+.....+. | .|..++||+|+.|||||+++|++..+. +..+|.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34578999999999999999877653332 2 356779999999999999999999876 56788888777
Q ss_pred ccccccCCchHHHHHHHHHHhcC-CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--CCCcEEEEecC
Q 003620 551 LLTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGAT 627 (807)
Q Consensus 551 l~~~~vg~se~~i~~~f~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~vivi~aT 627 (807)
+. .+..+++..+.. .+-|||+|++.. . . .+.-...|-..|||-- ...+|+|.+|+
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e--------~---~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSF--E--------E---GDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCC--C--------C---CcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 63 345556555533 356999998653 1 1 1223455666677642 35789999999
Q ss_pred CCCCCCCcc----------ccCC-----------CCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHH----HHHH
Q 003620 628 NRPDIIDPA----------LLRP-----------GRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLR----ALAK 681 (807)
Q Consensus 628 n~~~~ld~a----------llrp-----------gRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~----~la~ 681 (807)
||...+..- -+.| .||...|.|.+|+.++..+|++.++++..+.-+ .++. ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 986544211 1222 499999999999999999999999987776644 2332 2334
Q ss_pred HcCCCCHHhHHHHHHH
Q 003620 682 YTQGFSGADITEICQR 697 (807)
Q Consensus 682 ~t~g~sgadi~~l~~~ 697 (807)
.-.|.||+--.+.+..
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 4567888766655543
No 153
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.2e-11 Score=143.90 Aligned_cols=192 Identities=23% Similarity=0.327 Sum_probs=133.4
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEE---------
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV--------- 546 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v--------- 546 (807)
.+.+|++|.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3568999999999999998887531 2345589999999999999999999875421000
Q ss_pred ----eCccccc--cccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC
Q 003620 547 ----KGPELLT--MWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 547 ----~~~~l~~--~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
...+++. ..-..+...++.+.+.+... ...|++|||+|.+. ...++.||..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC-
Confidence 0011110 00002245578887776643 45799999999973 23578889988863
Q ss_pred CCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccc-cHHHHHHHcCCCCHHhHHHHH
Q 003620 617 AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEIC 695 (807)
Q Consensus 617 ~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-dl~~la~~t~g~sgadi~~l~ 695 (807)
...+++|.+|+.++.|.+.+++ |+. .+.|.+++.++...+++..+.+.++.-+. .+..+|..+.| +.+++.+++
T Consensus 146 -P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3456666777788899999887 885 89999999999999998887766554322 36677777664 445555555
Q ss_pred HHHH
Q 003620 696 QRAC 699 (807)
Q Consensus 696 ~~A~ 699 (807)
..++
T Consensus 221 ekl~ 224 (725)
T PRK07133 221 EQVS 224 (725)
T ss_pred HHHH
Confidence 5544
No 154
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.40 E-value=2.2e-11 Score=142.77 Aligned_cols=223 Identities=25% Similarity=0.386 Sum_probs=136.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v 546 (807)
..+|+++.|.+...+.+...+..+ .+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 457889999998888776554321 13469999999999999999998765 3578999
Q ss_pred eCcccc-------ccccCCchHH----HHHHHHH----------HhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHH
Q 003620 547 KGPELL-------TMWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (807)
Q Consensus 547 ~~~~l~-------~~~vg~se~~----i~~~f~~----------a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~ 605 (807)
++..+. ..++|..... .+..+.. .......+|||||++.|-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 987652 1122221111 1111110 0011235999999988743 223
Q ss_pred HHHHhcccCC--------------------------CCCCcEEEEe-cCCCCCCCCccccCCCCcceeEEecCCCHHHHH
Q 003620 606 NQLLTEMDGM--------------------------SAKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRH 658 (807)
Q Consensus 606 ~~lL~~ld~~--------------------------~~~~~vivi~-aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~ 658 (807)
..|+..|+.- .....+++|+ ||+.++.+++++.+ ||. .+++++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3333333221 0112355555 55678889999887 997 5688999999999
Q ss_pred HHHHHHhccCCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccc
Q 003620 659 QIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIK 737 (807)
Q Consensus 659 ~Il~~~~~~~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 737 (807)
.|++..+++..+.- +.-+..|++.+ +.|+...+++..+...++.+..... .......|+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~------------------~~~~~~~I~ 419 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG------------------KENDKVTIT 419 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc------------------cCCCCeeEC
Confidence 99999988765332 22244555544 3566666666666555444331000 001124699
Q ss_pred HHHHHHHHhhcC
Q 003620 738 AAHFEESMKFAR 749 (807)
Q Consensus 738 ~~~~~~a~~~~~ 749 (807)
.+|++++++.-+
T Consensus 420 ~edv~~~l~~~r 431 (615)
T TIGR02903 420 QDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHhCCCc
Confidence 999999997653
No 155
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.2e-12 Score=148.52 Aligned_cols=187 Identities=24% Similarity=0.328 Sum_probs=132.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+.+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 457999999999999998877531 223458999999999999999999987542
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ......++.+.+.+... ...|+||||+|.+. ....|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHH
Confidence 22222211 11244577777766432 34699999999873 3457788
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++..+.++..+++.++..+ ..+..+++.++| +
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888873 3455666666667777777766 77 68999999999999988888866555432 336677777654 6
Q ss_pred HHhHHHHHHHHHHH
Q 003620 688 GADITEICQRACKY 701 (807)
Q Consensus 688 gadi~~l~~~A~~~ 701 (807)
.+++.+++..|..+
T Consensus 214 lr~al~lldqai~~ 227 (527)
T PRK14969 214 MRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777666543
No 156
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.38 E-value=3.6e-12 Score=130.54 Aligned_cols=182 Identities=22% Similarity=0.277 Sum_probs=123.4
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC------eEEEEeCc
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGP 549 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~------~~i~v~~~ 549 (807)
.+-+++++.|++.+.+.|+..+.. .....+|||||||||||+.|+++|.++.. .+...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 356789999999999999887753 12245999999999999999999999864 33445555
Q ss_pred cccccccCCchHHHHHHHHHHhcC---------C-CeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCC
Q 003620 550 ELLTMWFGESEANVREIFDKARQS---------A-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 619 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~~f~~a~~~---------~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~ 619 (807)
+-.+.-++. .+ ..-|.+.... + +.|++|||.|++. ....+.|...|+.. ..
T Consensus 98 derGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMEDF--SR 158 (346)
T ss_pred ccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhcc--cc
Confidence 543332211 11 1223322221 2 3799999999974 34567777778763 45
Q ss_pred cEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHHHHH
Q 003620 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQ 696 (807)
Q Consensus 620 ~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~ 696 (807)
.+.+|..||.++.|.+-+.+ |+. .+.|+....+.....|+....+..+.-+.| ++.+++.++| |++..+.
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAIT 229 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 67778888999988877776 886 566777766677777777776665553333 6677776654 6665443
No 157
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=5.3e-12 Score=144.24 Aligned_cols=185 Identities=20% Similarity=0.256 Sum_probs=127.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 467999999999999988877531 22345899999999999999999997753
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++..- . .-..++.+.+.+.. ....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2333333211 1 12345555555432 345799999999873 3467888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.++.. +..+..+++.+. -+
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-Gd 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GS 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 8888863 3345555555557777777776 88 6999999999999988988887665442 333566777665 45
Q ss_pred HHhHHHHHHHHH
Q 003620 688 GADITEICQRAC 699 (807)
Q Consensus 688 gadi~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 158
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.2e-11 Score=141.24 Aligned_cols=186 Identities=22% Similarity=0.291 Sum_probs=131.9
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++.+++.|...+... +.+.++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 467999999999999998876421 23456999999999999999999998642
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++.. -.-..++.+.+.+... ...|++|||+|.+.. ...+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHH
Confidence 2333333211 1234567777665543 246999999998732 346788
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.++.|.+++++ |+. .+.|++++.++...+++..+++.++. .+..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 8888863 3456666777778999999887 875 79999999999999999888765532 23346777777765 5
Q ss_pred HHhHHHHHHHHHH
Q 003620 688 GADITEICQRACK 700 (807)
Q Consensus 688 gadi~~l~~~A~~ 700 (807)
.+++.+++..++.
T Consensus 214 lR~AlnlLekL~~ 226 (605)
T PRK05896 214 LRDGLSILDQLST 226 (605)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666665443
No 159
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=142.11 Aligned_cols=161 Identities=21% Similarity=0.326 Sum_probs=107.7
Q ss_pred ceeeCCCCCChhHHHHHHHHHh----------CCeEEEEeCccccccc----------c------C-CchHHHHHHHHHH
Q 003620 518 VLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------F------G-ESEANVREIFDKA 570 (807)
Q Consensus 518 iLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~~~----------v------g-~se~~i~~~f~~a 570 (807)
++++|+||||||++++.+..++ .+.++.|+|..+...+ . | .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2567899985543211 0 1 1234556677655
Q ss_pred h--cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCC---CCCCCccccCCCCcce
Q 003620 571 R--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 645 (807)
Q Consensus 571 ~--~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~---~~~ld~allrpgRfd~ 645 (807)
. .....||+|||||.|... ...++-.|+.... .....++|||++|. ++.|+|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 233579999999999653 2344444444332 13457899999986 5667888776 6653
Q ss_pred -eEEecCCCHHHHHHHHHHHhccCC-CCccccHHHHHHHcCCCCHHhHHHH
Q 003620 646 -LIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEI 694 (807)
Q Consensus 646 -~i~~~~p~~~~r~~Il~~~~~~~~-~~~~~dl~~la~~t~g~sgadi~~l 694 (807)
.|.|++++.+++.+||+..+.... +-.+.-+..+|+.+...+| |++.+
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG-DARKA 978 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG-DIRKA 978 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC-HHHHH
Confidence 478899999999999999987542 2223336677776554554 66643
No 160
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.37 E-value=3.8e-11 Score=143.81 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=135.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (807)
.++.|+++.|++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45899999999998887742211 113456799999999999999999999999999887754321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcc-----c--------CCceE
Q 003620 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (807)
..+.|.....+...+..+....| +++|||+|.+.+..... ..+.|+..+|.- . .-+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13445555555555555544445 89999999987653221 235577776631 1 12678
Q ss_pred EEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC-----CCCC------CchhhhHHhh-hcCCCcHH
Q 003620 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-----MKLS------DDVDLERIAK-DTHGYVGA 413 (807)
Q Consensus 346 iVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~-----~~~~------~~~~l~~la~-~t~g~~~~ 413 (807)
++|+|+|.. .++++|+. |+ ..|.+..++.++..+|.+.++.. ..+. .+.-+..++. .+..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999887 59999998 88 46899999999999998776521 1111 1222444443 34455566
Q ss_pred HHHHHHHHHHHHHH
Q 003620 414 DLAALCTEAALQCI 427 (807)
Q Consensus 414 dl~~l~~~a~~~~~ 427 (807)
.+...+...+...+
T Consensus 543 ~LeR~I~~i~r~~l 556 (784)
T PRK10787 543 SLEREISKLCRKAV 556 (784)
T ss_pred HHHHHHHHHHHHHH
Confidence 67666665544443
No 161
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.37 E-value=6.5e-12 Score=136.94 Aligned_cols=156 Identities=22% Similarity=0.281 Sum_probs=107.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~v 556 (807)
+.+++++.|.+++++.+...+.. + ..+..+||+||||+|||++|++++++.+.+++.+++++ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 46789999999999999887752 1 12344667999999999999999999998899998876 21 1
Q ss_pred CCchHHHHHHHHHHh-cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCc
Q 003620 557 GESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 557 g~se~~i~~~f~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~ 635 (807)
......+........ ...+.++||||+|.+... .....+. ..|+... .++.+|.+||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~---~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLR---SFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHH---HHHHhcC--CCceEEEEcCChhhchH
Confidence 111111222111111 134689999999987221 1223333 3344332 34567778899999999
Q ss_pred cccCCCCcceeEEecCCCHHHHHHHHHHHh
Q 003620 636 ALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 636 allrpgRfd~~i~~~~p~~~~r~~Il~~~~ 665 (807)
++.+ ||. .+.|+.|+.+++.++++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9988 995 78999999999988876543
No 162
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.1e-11 Score=135.91 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=122.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++.+-.|+++.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~ 77 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE 77 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC
Confidence 3567789999999999999988877541 123458999999999999999999998752
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+.
T Consensus 78 C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NA 140 (484)
T PRK14956 78 CTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNA 140 (484)
T ss_pred CcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHH
Confidence 22222211 111233444444332 34456999999998842 24566
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (807)
|+..|+.. ..++++|.+|+.++.+.+.+++ |+ ..+.+..++..+-.+.++..+....+ .++..+..++..+.|-
T Consensus 141 LLKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 141 LLKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS 215 (484)
T ss_pred HHHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh
Confidence 77777653 3578888899999999999988 66 45778788777777777666543332 2344578888888775
Q ss_pred c
Q 003620 411 V 411 (807)
Q Consensus 411 ~ 411 (807)
.
T Consensus 216 ~ 216 (484)
T PRK14956 216 V 216 (484)
T ss_pred H
Confidence 3
No 163
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=4.6e-12 Score=131.13 Aligned_cols=159 Identities=13% Similarity=0.164 Sum_probs=99.4
Q ss_pred CceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCC
Q 003620 517 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
.++||||||||||+|++++|++. +.....++..+. ......+++..+ ...+|+|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 47999999999999999999986 223333333211 111123344433 34699999999986431
Q ss_pred CCCCCchHHHHHHHHHhcccCCCC-CCcEEEEecCCCCCCCC---ccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC
Q 003620 594 VGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP 669 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~~-~~~vivi~aTn~~~~ld---~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~ 669 (807)
..... |+..++.... ...++|++++..|..++ +.+.+..++...+.+++|+.++|.+|++.......
T Consensus 108 ------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11223 3333333322 33456677777787664 78887445568899999999999999998876544
Q ss_pred CCccc-cHHHHHHHcCCCCHHhHHHHHHHH
Q 003620 670 VSKDV-DLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 670 ~~~~~-dl~~la~~t~g~sgadi~~l~~~A 698 (807)
+.-+. -+..|++...| +.+.+.+++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 43222 36677777653 455555555543
No 164
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=8e-12 Score=129.32 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=107.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccC
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~ 591 (807)
+..++|+||+|||||++|++++..+ +.+++.++++++.... ..++..... ..+|+|||+|.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 4569999999999999999999876 4578888887765321 233333322 3599999999974320
Q ss_pred CCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCC---ccccCCCCc--ceeEEecCCCHHHHHHHHHHHhc
Q 003620 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEDSRHQIFKACLR 666 (807)
Q Consensus 592 ~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld---~allrpgRf--d~~i~~~~p~~~~r~~Il~~~~~ 666 (807)
.....+-.++..+. ..+..+|++++..+..++ +.+.+ || ...+.+|+|+.+++..+++.+..
T Consensus 107 --------~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------HHHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 01222333333322 223345665555554443 56665 66 47899999999999999998876
Q ss_pred cCCCCcc-ccHHHHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 667 KSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 667 ~~~~~~~-~dl~~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
+..+.-+ .-+..|++. -+-+.+++.++++++...+..
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 5544322 236677775 445778888888887654444
No 165
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.6e-12 Score=142.34 Aligned_cols=186 Identities=22% Similarity=0.334 Sum_probs=127.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++.+.+.|...+... +.+..+|||||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 467999999999999998887531 23345899999999999999999998753
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHH
Confidence 122222211 1123345666555543 345799999999873 2346778
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~s 687 (807)
|..|+... ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..++..++.-+ ..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887643 234444455667788888877 775 7999999999999999998887665432 336677776664 4
Q ss_pred HHhHHHHHHHHHH
Q 003620 688 GADITEICQRACK 700 (807)
Q Consensus 688 gadi~~l~~~A~~ 700 (807)
-+++.+++..+..
T Consensus 214 lr~al~~Ldkl~~ 226 (486)
T PRK14953 214 MRDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655543
No 166
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.3e-11 Score=137.74 Aligned_cols=176 Identities=18% Similarity=0.265 Sum_probs=121.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 268 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 268 (807)
..+.+-+|+++.|.++.++.|+.++... ..+..+||+|||||||||+|+++|+.+++
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3567789999999999988888776542 12456999999999999999999998864
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 269 -------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 269 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. .....
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~ 136 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNA 136 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHH
Confidence 244444321 1112345555544332 2346999999998842 22355
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC--CCCCCchhhhHHhhhcCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g 409 (807)
|+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+.. ..+. +..+..++..+.|
T Consensus 137 LLk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~G 210 (472)
T PRK14962 137 LLKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASG 210 (472)
T ss_pred HHHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 667776533 356777777778889999987 66 47899999999988888776543 3333 3457778777665
Q ss_pred C
Q 003620 410 Y 410 (807)
Q Consensus 410 ~ 410 (807)
-
T Consensus 211 d 211 (472)
T PRK14962 211 G 211 (472)
T ss_pred C
Confidence 3
No 167
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=143.42 Aligned_cols=186 Identities=20% Similarity=0.288 Sum_probs=133.4
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|++|+|++++++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 468999999999999998877531 234558999999999999999999987531
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ......++.+.+.+... ...|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHH
Confidence 34444332 11234677777666433 34699999999873 2457888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|..++.++....++..+++.++. .+..+..+++.++| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 8888863 3466677777888889888887 774 88899999999998888888766544 23346777777775 4
Q ss_pred HHhHHHHHHHHHH
Q 003620 688 GADITEICQRACK 700 (807)
Q Consensus 688 gadi~~l~~~A~~ 700 (807)
-+++.+++..+..
T Consensus 214 lr~al~~Ldqlia 226 (576)
T PRK14965 214 MRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 168
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.35 E-value=4e-12 Score=110.17 Aligned_cols=80 Identities=36% Similarity=0.588 Sum_probs=67.1
Q ss_pred eEEEecccCC---CCcEEEECHHHHhhcCCCCCCEEEEEeCCCceEEEEEEcCCCC--CCCeEEEcHhHHhhcCCCCCCe
Q 003620 30 RLVVDEAIND---DNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTC--EQPKIRMNKVVRSNLRVRLGDV 104 (807)
Q Consensus 30 ~~~v~~~~~~---g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~g~~ 104 (807)
+|+|.++..+ ++++|+|||+.|++||+..||+|.|.| ++ .++|.||+.... +++.|+|+..+|.|+++++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g-~~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISG-KR-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEET-TT-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeC-Cc-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5899998843 899999999999999999999999999 43 499999987644 7899999999999999999999
Q ss_pred EEEEecC
Q 003620 105 VSVHQCP 111 (807)
Q Consensus 105 v~v~~~~ 111 (807)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 169
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.5e-11 Score=139.93 Aligned_cols=180 Identities=15% Similarity=0.226 Sum_probs=125.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++.+-+|++|.|.++.++.|+.++... ..+..+||+||+||||||+++++++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 3567789999999999999998887541 123458999999999999999999988642
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
++.++..+ ...-..++.+++.+. .....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 23332211 112234555555443 23456999999998842 23456
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (807)
|++.|+... .++.+|.+|++++.|.+.+++ |+ ..+.|..+..++-.+.|+..+..-.+. ++..+..+++...|-
T Consensus 139 LLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777777543 367888888999999999988 66 568888888888888887665433222 344577788888776
Q ss_pred cHH
Q 003620 411 VGA 413 (807)
Q Consensus 411 ~~~ 413 (807)
...
T Consensus 214 mRd 216 (830)
T PRK07003 214 MRD 216 (830)
T ss_pred HHH
Confidence 443
No 170
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=136.93 Aligned_cols=191 Identities=19% Similarity=0.295 Sum_probs=127.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccc-----
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL----- 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l----- 551 (807)
+.+|++++|.+.+.+.+...+... ..+.++|||||||+|||++|+++|..+........+.++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 568999999999999998877531 234579999999999999999999987542111000000
Q ss_pred -cccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEec
Q 003620 552 -LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (807)
Q Consensus 552 -~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~a 626 (807)
.+..-......++.+++.+... .+.|+|+||+|.+.. ..++.|+..|+.. ....++|.+
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEEEE
Confidence 0111112245777888776543 357999999998632 3467777777653 233455555
Q ss_pred CCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHHH
Q 003620 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 627 Tn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A~ 699 (807)
|+.+..+.+++.+ |+. .+.|++|+.++...++...+++.++. ++..+..++..+.| +-+.+.+.+....
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6667888888876 764 68999999999999998888776653 23446777776654 4444444444443
No 171
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=2.5e-11 Score=139.41 Aligned_cols=181 Identities=30% Similarity=0.417 Sum_probs=126.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
++..+.+++++.|.++.++++++++..-.. | .++.++||+|||||||||+|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 456777899999999999999988864211 1 2367899999999999999999999999999999887643
Q ss_pred hhhhchhHHHHHHHHHHHHh------cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC
Q 003620 280 SKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a~~------~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 353 (807)
. ...++.+...+.. ..+.+|+|||+|.+..+.. ......|+..++. .+..+|.++|.
T Consensus 77 ~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 T------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred c------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 2 1223333333222 2467999999999865321 1234556666653 23345557788
Q ss_pred CCCCCH-HhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 003620 354 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 354 ~~~ld~-al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 409 (807)
+..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 887776 6665 33679999999999999998776543322 34457788877765
No 172
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.9e-11 Score=139.30 Aligned_cols=186 Identities=16% Similarity=0.240 Sum_probs=126.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.++.++.|+.++... ..+..+||+||+|+||||+++.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 567788999999999999998887642 123468999999999999999999998751
Q ss_pred ------------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHH
Q 003620 270 ------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 270 ------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
++.++... ...-..++.+++... .....|+||||+|.|.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 22222211 112234555555432 34457999999998842 2
Q ss_pred HHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhh
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~ 406 (807)
..+.|++.|+.. ..++++|.+|++++.|.+.+++ |+ ..+.|..++.++-.+.|+..+....+. ++..+..++..
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345677777653 3467888889999999999988 65 567888898888887777654432222 23346677777
Q ss_pred cCCCcHHHHHHHHHH
Q 003620 407 THGYVGADLAALCTE 421 (807)
Q Consensus 407 t~g~~~~dl~~l~~~ 421 (807)
++|-.. +...++.+
T Consensus 215 A~Gs~R-dALsLLdQ 228 (700)
T PRK12323 215 AQGSMR-DALSLTDQ 228 (700)
T ss_pred cCCCHH-HHHHHHHH
Confidence 776543 44444433
No 173
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1e-11 Score=140.40 Aligned_cols=172 Identities=16% Similarity=0.279 Sum_probs=115.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchH---HHHHHHHHHhcCCCeEEEEeccchhh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~---~i~~~f~~a~~~~p~ilfiDEid~l~ 587 (807)
.+++|||++|+|||+|++++++++ +..++.+++.++...+...... .+....+.. ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999865 3577889988887665433221 222222222 235699999999985
Q ss_pred hccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHH
Q 003620 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFK 662 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~---ld~allrpgRfd--~~i~~~~p~~~~r~~Il~ 662 (807)
++ ......|...++.+...++.+|+++...|+. +++.+.+ ||. ..+.+.+|+.++|.+|++
T Consensus 220 ~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 42 1223344444444334444566666666654 4677776 885 777889999999999999
Q ss_pred HHhccCCC---CccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 663 ACLRKSPV---SKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 663 ~~~~~~~~---~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
..++..++ -++.-+..|+....| +.+.+.++|..+...+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 99976543 122235667776664 777888888877655544
No 174
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=9.5e-12 Score=131.42 Aligned_cols=131 Identities=26% Similarity=0.359 Sum_probs=92.2
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCc------cccccccCCchHHHH---------------------HHHH
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANVR---------------------EIFD 568 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~------~l~~~~vg~se~~i~---------------------~~f~ 568 (807)
..+||+||||||||++|+++|..++.+|+.+++. ++++.|.|.....+. .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 5699999999999999999999999999998764 444444432222111 1222
Q ss_pred HHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--------------CCCcEEEEecCCCCC---
Q 003620 569 KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD--- 631 (807)
Q Consensus 569 ~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------------~~~~vivi~aTn~~~--- 631 (807)
.++. ..++++|||+.+- ..+.+.|+..|+.-. ...++.||+|+|...
T Consensus 102 A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 102 AVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 2222 2599999999853 234555555554311 113567999999763
Q ss_pred --CCCccccCCCCcceeEEecCCCHHHHHHHHHHHh
Q 003620 632 --IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 632 --~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~ 665 (807)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 166 ~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 166 VHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred eecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 589999999999999998875
No 175
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4e-11 Score=132.75 Aligned_cols=185 Identities=20% Similarity=0.305 Sum_probs=125.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (807)
.|++|+|++..++.|+.++..+..++. .++...+..+||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987554322 2333456789999999999999999999876542
Q ss_pred -------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003620 270 -------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 270 -------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
+..+.... ..-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|++.|+.
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 11121100 01123456777766543 33469999999988422 23567888876
Q ss_pred ccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHHHHHH
Q 003620 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAAL 418 (807)
Q Consensus 339 ~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~dl~~l 418 (807)
... ++++|.+|++++.+.|.+++ |+ ..+.++.|+.++..++|.... .+. ......++..++|..+..+.-+
T Consensus 144 p~~--~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP--RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC--CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 432 34444455558999999998 66 578999999998877775322 222 3346677888888887665443
No 176
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.6e-11 Score=141.92 Aligned_cols=183 Identities=21% Similarity=0.289 Sum_probs=128.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+.+|++|.|++.+++.|...+... +.+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 468999999999999998887531 233569999999999999999999987532
Q ss_pred ----------EEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ...++.|
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naL 139 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNAL 139 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHH
Confidence 33333221 012345555554433 3455799999999873 3467888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+.. ...+++|.+|+.++.|.+++.+ |+. .+.|.+++.++..++++..+++.++. .+..+..|++.+.| +
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888853 3456666666778888888887 886 68899999999999998888665543 22336667766665 5
Q ss_pred HHhHHHHHHH
Q 003620 688 GADITEICQR 697 (807)
Q Consensus 688 gadi~~l~~~ 697 (807)
.+++.+++..
T Consensus 214 lR~alslLdk 223 (563)
T PRK06647 214 VRDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 177
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3.3e-11 Score=137.00 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=133.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|+++.|++.+++.|...+... +.+..+|||||+|+|||++|+++|..+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 468999999999999998877521 23345799999999999999999998632
Q ss_pred ---------eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHH
Q 003620 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++.- ..-..++.+.+.+.. ....|++|||+|.+. ...++.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1233322210 113456666655432 234699999998873 3467888
Q ss_pred HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCC
Q 003620 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~s 687 (807)
|..|+..+ ..+.+|.+|+.+..|.+++.+ |+ ..++|.+++.++..+.++..+++.++. .+..+..+++.+.| +
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 88888753 334455555667888899887 86 588999999999999998888766544 23346777777765 7
Q ss_pred HHhHHHHHHHHHHHH
Q 003620 688 GADITEICQRACKYA 702 (807)
Q Consensus 688 gadi~~l~~~A~~~a 702 (807)
.+++.+++..|..++
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777778877766554
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.2e-11 Score=137.82 Aligned_cols=182 Identities=20% Similarity=0.294 Sum_probs=125.7
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
+.+|++|.|++.+++.|...+... +.+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 468999999999999998877531 23456899999999999999999998643
Q ss_pred ----------eEEEEeCccccccccCCchHHHHHHHHHH----hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHH
Q 003620 542 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++... . +-..++.+-+.. ......|+||||+|.+. ....+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHH
Confidence 2444443221 1 113344333322 23456899999999873 234678
Q ss_pred HHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCC
Q 003620 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~ 686 (807)
||..|+... ..+++|.+||.++.|.+++.+ |+. .++|+.++.++...+++..+++.++. ++..+..|+..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888743 356666677888889898887 885 78999999999999998887765543 23346677777654
Q ss_pred CHHhHHHHHH
Q 003620 687 SGADITEICQ 696 (807)
Q Consensus 687 sgadi~~l~~ 696 (807)
+-+++.+.+.
T Consensus 215 dlr~a~~~Le 224 (451)
T PRK06305 215 SLRDAESLYD 224 (451)
T ss_pred CHHHHHHHHH
Confidence 3334444433
No 179
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.31 E-value=6.6e-11 Score=133.39 Aligned_cols=171 Identities=29% Similarity=0.470 Sum_probs=118.0
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 003620 201 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~---l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
.+.+-+++++.|.++.+.. +++++.. ....+++|+|||||||||+|+++++.++..++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4566788999999988766 7776643 12347999999999999999999999999999988753
Q ss_pred hhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC-
Q 003620 278 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn- 352 (807)
. ....++.+++.+. .....+|||||+|.+... ....|+..++. ..+++|++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2 1234455555543 235679999999987421 22445555542 4566666553
Q ss_pred C-CCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC----C-CCCCchhhhHHhhhcCCC
Q 003620 353 R-PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----M-KLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 353 ~-~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~----~-~~~~~~~l~~la~~t~g~ 410 (807)
. ...+++++++ |+ ..+.+..++.++...+++..+.. . .+ .+..++.++..+.|-
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 3 3478899988 66 67899999999988888765433 1 22 233456666666553
No 180
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.30 E-value=2.1e-11 Score=127.24 Aligned_cols=206 Identities=17% Similarity=0.287 Sum_probs=138.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC---------CeEEEEe
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVK 547 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~---------~~~i~v~ 547 (807)
.-.|-+......+-+.|.+.+.+|...+ ..++||+|++|.|||++++.++.... .|++.+.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~R----------mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq 102 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHR----------MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ 102 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccC----------CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe
Confidence 3467665566667777777777775432 35699999999999999999998752 3667776
Q ss_pred Cccccc--------------cc-cCCc-hHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhc
Q 003620 548 GPELLT--------------MW-FGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 611 (807)
Q Consensus 548 ~~~l~~--------------~~-vg~s-e~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ 611 (807)
.+.--+ .| ...+ .+.-..+....+...+.+|+|||++.++.-+ .+-..++|+.
T Consensus 103 ~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~ 171 (302)
T PF05621_consen 103 MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNA 171 (302)
T ss_pred cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-----------HHHHHHHHHH
Confidence 543211 11 0111 1222233444556677799999999986421 1223444444
Q ss_pred ccCCCCC--CcEEEEecCCCCCCC--CccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccH------HHHHH
Q 003620 612 MDGMSAK--KTVFIIGATNRPDII--DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDL------RALAK 681 (807)
Q Consensus 612 ld~~~~~--~~vivi~aTn~~~~l--d~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl------~~la~ 681 (807)
|..+.+. -.++.+||..-...+ |+.+-+ ||+....-+|...++...++..+.+.+|+....++ ..|..
T Consensus 172 LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~ 249 (302)
T PF05621_consen 172 LKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE 249 (302)
T ss_pred HHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 4444332 345666655444443 788887 99976666676777888899988888887654432 56667
Q ss_pred HcCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 682 YTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 682 ~t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
.++|..| +|..+++.|+..|++.+
T Consensus 250 ~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 250 RSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HcCCchH-HHHHHHHHHHHHHHhcC
Confidence 8999998 99999999999999987
No 181
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=4.6e-11 Score=138.58 Aligned_cols=192 Identities=21% Similarity=0.232 Sum_probs=133.0
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEe-C-------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 548 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~-~------- 548 (807)
..+|+++.|++.+++.|...+... +.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 467999999999999998877531 23457999999999999999999998764321111 0
Q ss_pred -------------ccccccc--cCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHH
Q 003620 549 -------------PELLTMW--FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 549 -------------~~l~~~~--vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
+|++... -...-..+|++.+.++.. ...|+||||+|.+. ....+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 1111100 001234677787776543 35799999999973 23578888
Q ss_pred hcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCCCH
Q 003620 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 688 (807)
Q Consensus 610 ~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~sg 688 (807)
..|+... ..+++|.+|+.++.+-+.+.+ |+ ..+.|+.++.++...+++..+++.++.-+ ..+..|++.+.| +.
T Consensus 154 KtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8888643 345555556666777777776 87 47999999999999999998877665433 346667777765 66
Q ss_pred HhHHHHHHHHHH
Q 003620 689 ADITEICQRACK 700 (807)
Q Consensus 689 adi~~l~~~A~~ 700 (807)
+++.+++..+..
T Consensus 228 r~al~~Ldkli~ 239 (598)
T PRK09111 228 RDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHHh
Confidence 677777766543
No 182
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=6.1e-11 Score=137.07 Aligned_cols=199 Identities=25% Similarity=0.390 Sum_probs=126.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCe
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAF 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~ 269 (807)
++..+.+|+++.|.++.++.++..+.. ..+.++||+||||||||++|+++.... +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 345677899999999999988765432 235689999999999999999997642 357
Q ss_pred EEEEechhh-------hhhhhchhHHHH---HHHHH----------HHHhcCCeEEEEccchhccCCCCCCchhHHHHHH
Q 003620 270 FFCINGPEI-------MSKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 270 ~i~v~~~~l-------~~~~~g~~~~~l---~~vf~----------~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
|+.++|... .....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 888987531 111111000000 00000 011223469999999988532 22
Q ss_pred HHHHHHhhccc--------------------------CCce-EEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHH
Q 003620 330 SQLLTLMDGLK--------------------------SRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382 (807)
Q Consensus 330 ~~Ll~~ld~~~--------------------------~~~~-viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~ 382 (807)
..|+..|+.-. .... .++.+||+.++.+++++++ |+ ..+.++.++.++..
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 34444443210 0112 3455667789999999998 76 46889999999999
Q ss_pred HHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHHHHHHHH
Q 003620 383 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCI 427 (807)
Q Consensus 383 ~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~ 427 (807)
++++..+++..+. ++..++.++..+ +.++++..+++.|+..+.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHh
Confidence 9999887655432 233455565544 367888888888876543
No 183
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.6e-10 Score=135.03 Aligned_cols=183 Identities=20% Similarity=0.288 Sum_probs=127.9
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
...|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 468999999999999998877642 123469999999999999999999997652
Q ss_pred ------------EEEEeCccccccccCCchHHHHHHHHHHhcC----CCeEEEEeccchhhhccCCCCCCCCchHHHHHH
Q 003620 543 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 543 ------------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
++.++. ..+.....++++.+.+... ...|+||||+|.+. ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 222221 1123456788888776543 34799999999873 34678
Q ss_pred HHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCC
Q 003620 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g 685 (807)
.||..|+. ....+++|++|+.++.|-+.+.+ |+. .+.|+.++.++....++...++.++. .+..+..+++.+.|
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 88998885 33456666667778888888876 874 78898888888887777766654433 22336777777765
Q ss_pred CCHHhHHHHHHH
Q 003620 686 FSGADITEICQR 697 (807)
Q Consensus 686 ~sgadi~~l~~~ 697 (807)
+.+++.+++..
T Consensus 215 -~lr~A~~lLek 225 (620)
T PRK14948 215 -GLRDAESLLDQ 225 (620)
T ss_pred -CHHHHHHHHHH
Confidence 22444444443
No 184
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.28 E-value=5.3e-11 Score=123.29 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=99.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccC
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~ 591 (807)
..+++|+||+|||||+||++++.+. +.+++.+++.++... +.. .....+++|||+|.+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~--- 104 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD--- 104 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc---
Confidence 4569999999999999999999875 557777777664321 111 22346999999998632
Q ss_pred CCCCCCCchHHHHHHHHHhcccCCCCCCc-EEEEecCCCCC--CCCccccCCCCc--ceeEEecCCCHHHHHHHHHHHhc
Q 003620 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPD--IIDPALLRPGRL--DQLIYIPLPDEDSRHQIFKACLR 666 (807)
Q Consensus 592 ~~~~~~~~~~~~v~~~lL~~ld~~~~~~~-vivi~aTn~~~--~ld~allrpgRf--d~~i~~~~p~~~~r~~Il~~~~~ 666 (807)
.... .|+..++....... +++++++..|. .+.+.+.+ || ...+.+|+|+.+++..+++....
T Consensus 105 --------~~~~---~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 105 --------AQQI---ALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred --------hHHH---HHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 1122 23333333223334 45555544432 24566665 77 47999999999999999988776
Q ss_pred cCCCCccc-cHHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 667 KSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 667 ~~~~~~~~-dl~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
...+.-+. -+..|++... -+.+++.++++.....|
T Consensus 172 ~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 172 ERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYS 207 (227)
T ss_pred HcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 55444333 3566776444 36667777777644433
No 185
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=3.1e-10 Score=126.30 Aligned_cols=200 Identities=23% Similarity=0.311 Sum_probs=123.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechhh
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 278 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l 278 (807)
+++.|-++++++|..++.-.+.. ..+.+++|+||||||||++++.++..+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999998887542211 2356799999999999999999987653 46788887543
Q ss_pred hh----------hhh--c--------hhHHHHHHHHHHHH-hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003620 279 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (807)
Q Consensus 279 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (807)
.+ ... + ...+.+..++.... ...+.+|+|||+|.+.... ..++.+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 21 110 1 01222344444443 2456799999999997221 113344444421
Q ss_pred cc-cCCceEEEEEecCCCC---CCCHHhhccCccc-eEEEeCCCChHHHHHHHHHHhcC-C--CCCCchhhhH---Hhhh
Q 003620 338 GL-KSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLER---IAKD 406 (807)
Q Consensus 338 ~~-~~~~~viVI~atn~~~---~ld~al~r~~rf~-~~i~i~~P~~~~R~~il~~~~~~-~--~~~~~~~l~~---la~~ 406 (807)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..++. ++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 1235788899998875 46777766 564 67899999999999999877642 1 1112222333 3334
Q ss_pred cCCCcHHHHHHHHHHHHHHHH
Q 003620 407 THGYVGADLAALCTEAALQCI 427 (807)
Q Consensus 407 t~g~~~~dl~~l~~~a~~~~~ 427 (807)
+.|.... ...+|..|+..+.
T Consensus 236 ~~Gd~R~-al~~l~~a~~~a~ 255 (365)
T TIGR02928 236 EHGDARK-AIDLLRVAGEIAE 255 (365)
T ss_pred hcCCHHH-HHHHHHHHHHHHH
Confidence 4454333 3345666655443
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.28 E-value=2.6e-11 Score=131.97 Aligned_cols=176 Identities=30% Similarity=0.456 Sum_probs=123.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhcC-CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hhhc-h
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 285 (807)
.|.|.+++++.+...+...++...+...+. -.++.+|||+||||||||++++++|..++.+|+.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999777765443332222211 235689999999999999999999999999999999877653 5555 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 003620 286 SESNLRKAFEEA-------------------------------------------------------------------- 297 (807)
Q Consensus 286 ~~~~l~~vf~~a-------------------------------------------------------------------- 297 (807)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 445455444443
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q 003620 298 -----------------------------------------------------------------------EKNAPSIIF 306 (807)
Q Consensus 298 -----------------------------------------------------------------------~~~~p~Il~ 306 (807)
...+-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012446999
Q ss_pred EccchhccCCCCCCchhHHH-HHHHHHHHHhhccc--------CCceEEEEEec----CCCCCCCHHhhccCccceEEEe
Q 003620 307 IDEIDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 307 iDEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~--------~~~~viVI~at----n~~~~ld~al~r~~rf~~~i~i 373 (807)
|||||.++.+......++.. -+...||.++++-. ...++++|++- ..|.++=|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999999765332333333 35567888887632 23567777543 24566667776 499999999
Q ss_pred CCCChHHHHHHHH
Q 003620 374 GVPDEVGRLEVLR 386 (807)
Q Consensus 374 ~~P~~~~R~~il~ 386 (807)
..++.++-.+||.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999998883
No 187
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.27 E-value=1e-10 Score=127.60 Aligned_cols=180 Identities=22% Similarity=0.294 Sum_probs=117.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-----CeEEEEeCccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-----~~~i~v~~~~l 551 (807)
+.+|+++.|.+++++.+...+... ...+++|+||||||||++++++++++. .+++.++.++-
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 467899999999999998876531 112489999999999999999999863 34565554432
Q ss_pred cccccCCchHHHHHHH-HHHhc-----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEe
Q 003620 552 LTMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f-~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~ 625 (807)
. ....++..+ +.++. ..+.++++||+|.+.. ...+.|+..++..... ..+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~~--~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQN--TRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCCC--CeEEE
Confidence 1 111222222 22221 2346999999998743 1234555555554332 34444
Q ss_pred cCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHHH
Q 003620 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 626 aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~A 698 (807)
++|.+..+.+++.+ |+. .+.|++++.++...+++..+++.++. .+..+..+++.+.| |++.+.+..
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g----d~r~~~~~l 204 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG----DMRKAINAL 204 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 56666767677766 776 68999999999999999998776543 23347777776654 444444333
No 188
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.27 E-value=2.1e-10 Score=127.58 Aligned_cols=219 Identities=27% Similarity=0.318 Sum_probs=135.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhh--cCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hhhc
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG 284 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~--l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g 284 (807)
.|.|++++++.+...+..+++.-..... -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3899999999987666432222110000 011 24568999999999999999999999999999999987653 5666
Q ss_pred hhH-HHHHHHHHH----HHhcCCeEEEEccchhccCCCCCCch--hH-HHHHHHHHHHHhhccc-----------CCceE
Q 003620 285 ESE-SNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHG--EV-ERRIVSQLLTLMDGLK-----------SRAHV 345 (807)
Q Consensus 285 ~~~-~~l~~vf~~----a~~~~p~Il~iDEid~l~~~~~~~~~--~~-~~~v~~~Ll~~ld~~~-----------~~~~v 345 (807)
... ..+..+++. .....++||||||||.+.++...++. ++ ...+...|+.+|++-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 543 334444443 23456789999999999876432211 11 1246678888887521 01123
Q ss_pred EEEEecCCCC----------------------------------------------------CCCHHhhccCccceEEEe
Q 003620 346 IVIGATNRPN----------------------------------------------------SIDPALRRFGRFDREIDI 373 (807)
Q Consensus 346 iVI~atn~~~----------------------------------------------------~ld~al~r~~rf~~~i~i 373 (807)
++|.|+|-.. .+.|++. +|++..+.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 4454444310 0123332 588888999
Q ss_pred CCCChHHHHHHHHH----Hhc---------CCCCC-CchhhhHHhhh--cCCCcHHHHHHHHHHHHHHHHHh
Q 003620 374 GVPDEVGRLEVLRI----HTK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 374 ~~P~~~~R~~il~~----~~~---------~~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
...+.+...+|+.. ..+ ++.+. ++.-++.+++. ..+|-.+.+..++.......+.+
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999998888862 221 11211 23345666664 45666777777777666555443
No 189
>PLN03025 replication factor C subunit; Provisional
Probab=99.27 E-value=1.3e-10 Score=126.53 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=117.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEe
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~ 274 (807)
+++.+-+++++.|.++.++.|+.++... ...++||+|||||||||+|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 4567788999999999999988776531 123699999999999999999999873 2356666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHH-------hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEE
Q 003620 275 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viV 347 (807)
.++..+ ...++..+.... .....+++|||+|.+... ....|+..++.... ...+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~--~t~~ 132 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSN--TTRF 132 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccC--CceE
Confidence 654321 112333322211 123579999999988532 12446666665433 2345
Q ss_pred EEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC--CCCCCchhhhHHhhhcCC
Q 003620 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 348 I~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g 409 (807)
+.+||....+.+++++ |. ..+.+..|+.++....++..++. +.+. +..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 5577788888888887 55 46899999999988888766543 3333 3456777776654
No 190
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=5.7e-11 Score=123.44 Aligned_cols=158 Identities=17% Similarity=0.148 Sum_probs=98.9
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhC---CeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++|+||+|||||+|+++++++.. .....+...+... ....+.+..... .+++|||++.+.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~~--dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQL--SLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhhC--CEEEEeChhhhcCCH--
Confidence 3699999999999999999998764 2233444333211 112222222222 589999999985421
Q ss_pred CCCCCCchHHHHHHHHHhcccCCCCCC-cEEEEecCCCCCC---CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhc
Q 003620 593 SVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLR 666 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~-~vivi~aTn~~~~---ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~~ 666 (807)
...+.+-.+++.+ ...+ ..+|+++++.|.. +.|.+.+ |+. .++.+.+|+.+++.++++....
T Consensus 114 -------~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1122222222222 1222 3466667777766 5788887 886 7999999999999999998665
Q ss_pred cCCCCccc-cHHHHHHHcCCCCHHhHHHHHHHH
Q 003620 667 KSPVSKDV-DLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 667 ~~~~~~~~-dl~~la~~t~g~sgadi~~l~~~A 698 (807)
..++.-+. -++.|++..+| +.+.+.+++...
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 54443222 36777777764 566666666653
No 191
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=2.7e-10 Score=128.14 Aligned_cols=200 Identities=23% Similarity=0.297 Sum_probs=124.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhh---
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIM--- 279 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~--- 279 (807)
+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.+++.+ +..++.++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 45788899999988777432211 235679999999999999999999876 4668888885321
Q ss_pred -------hhhhc--------hhHHHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCc
Q 003620 280 -------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (807)
Q Consensus 280 -------~~~~g--------~~~~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (807)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-CC
Confidence 11111 112223333333332 3568999999999972211 123455555555443 23
Q ss_pred eEEEEEecCCCC---CCCHHhhccCcc-ceEEEeCCCChHHHHHHHHHHhcCC---CCCCchhhhHHhhhcCCCc--HHH
Q 003620 344 HVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYV--GAD 414 (807)
Q Consensus 344 ~viVI~atn~~~---~ld~al~r~~rf-~~~i~i~~P~~~~R~~il~~~~~~~---~~~~~~~l~~la~~t~g~~--~~d 414 (807)
++.+|+++|.++ .+++.+.+ || ...+.+++++.++..+|++.+++.. ...++..++.+++.+.+.. .+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 777888887764 46777765 44 3578999999999999998776431 1223334666666663322 223
Q ss_pred HHHHHHHHHHHH
Q 003620 415 LAALCTEAALQC 426 (807)
Q Consensus 415 l~~l~~~a~~~~ 426 (807)
+..+|..|+..+
T Consensus 251 a~~ll~~a~~~a 262 (394)
T PRK00411 251 AIDLLRRAGLIA 262 (394)
T ss_pred HHHHHHHHHHHH
Confidence 335555555444
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.26 E-value=2.8e-11 Score=131.69 Aligned_cols=176 Identities=28% Similarity=0.434 Sum_probs=124.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhcCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hhhc-h
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-E 285 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~ 285 (807)
.|.|++++++.+...+...++...+...+.. ..+.++||+||||||||++|+.||+.++.+|+.+++..+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4999999999998777543322222111111 13578999999999999999999999999999999887764 5666 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 003620 286 SESNLRKAFEEAE------------------------------------------------------------------- 298 (807)
Q Consensus 286 ~~~~l~~vf~~a~------------------------------------------------------------------- 298 (807)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4455555555440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 003620 299 -----------------------------------------------------------------------KNAPSIIFI 307 (807)
Q Consensus 299 -----------------------------------------------------------------------~~~p~Il~i 307 (807)
..+-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccchhccCCCCCCchhHHH-HHHHHHHHHhhccc--------CCceEEEEEec----CCCCCCCHHhhccCccceEEEeC
Q 003620 308 DEIDSIAPKREKTHGEVER-RIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 308 DEid~l~~~~~~~~~~~~~-~v~~~Ll~~ld~~~--------~~~~viVI~at----n~~~~ld~al~r~~rf~~~i~i~ 374 (807)
||||.|+.+.+....++.. -+...||.++++-. ...++++|++- ..|.++-|.|.. ||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 9999999775432223333 35567888887632 23567777542 345667788864 999999999
Q ss_pred CCChHHHHHHHH
Q 003620 375 VPDEVGRLEVLR 386 (807)
Q Consensus 375 ~P~~~~R~~il~ 386 (807)
.++.++-.+||.
T Consensus 334 ~L~~~dL~~ILt 345 (443)
T PRK05201 334 ALTEEDFVRILT 345 (443)
T ss_pred CCCHHHHHHHhc
Confidence 999999998883
No 193
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.6e-10 Score=128.04 Aligned_cols=185 Identities=21% Similarity=0.268 Sum_probs=123.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+.+|+++.|+++.++.++..+... ..+..+||+||+|+||||+|+++|+.+.+.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 556788999999999999988777541 123468999999999999999999988632
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. ...+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHH
Confidence 12222210 0122345566555432 2345999999997731 233457
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..++++..++.... .++..+..++..+.|-
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~- 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS- 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77776543 355566677778888888887 66 56899999999999888876554332 2334567777777663
Q ss_pred HHHHHHHHH
Q 003620 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.+++..++.
T Consensus 214 ~R~al~~l~ 222 (363)
T PRK14961 214 MRDALNLLE 222 (363)
T ss_pred HHHHHHHHH
Confidence 334444443
No 194
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.26 E-value=1.7e-11 Score=130.34 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=100.6
Q ss_pred cCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccc--ccCCchHH----------HHHHHHHHhcCCCeEEE
Q 003620 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVLF 579 (807)
Q Consensus 512 ~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~--~vg~se~~----------i~~~f~~a~~~~p~ilf 579 (807)
+...+++||.||||||||++++.+|..++.+++.|++...++. ++|...-. ....+-.|.. .+++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ill 139 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALC 139 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEE
Confidence 3345679999999999999999999999999999987765544 45542211 1123334433 357899
Q ss_pred EeccchhhhccCCCCCCCCchHHHHHHHHHhc-----ccC----CCCCCcEEEEecCCCCC------------CCCcccc
Q 003620 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDG----MSAKKTVFIIGATNRPD------------IIDPALL 638 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~-----ld~----~~~~~~vivi~aTn~~~------------~ld~all 638 (807)
+||+|..-+ .....++.+|.. +.+ +.....+.||||+|..+ .++.|++
T Consensus 140 lDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 140 FDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred echhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 999998632 233444555542 111 11234788999999865 3578999
Q ss_pred CCCCcceeEEecCCCHHHHHHHHHHHhcc
Q 003620 639 RPGRLDQLIYIPLPDEDSRHQIFKACLRK 667 (807)
Q Consensus 639 rpgRfd~~i~~~~p~~~~r~~Il~~~~~~ 667 (807)
. ||-.++.+++|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99988999999999999999877544
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.26 E-value=9.2e-11 Score=133.84 Aligned_cols=155 Identities=25% Similarity=0.432 Sum_probs=107.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~ 317 (807)
..++||||||||||+|++++++++ +..++++++.++...+..........-|..... .+.+|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 456888998887665544332211122322222 46799999999986442
Q ss_pred CCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC---CCHHhhccCccc--eEEEeCCCChHHHHHHHHHHhcC-
Q 003620 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN- 391 (807)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~~- 391 (807)
. ....|+..++.+......+|+++...|.. +++.+++ ||. ..+++..|+.+.|..|++..+..
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 22345666665544445567766666655 5678877 775 57899999999999999987654
Q ss_pred -CCCCCchhhhHHhhhcCCC
Q 003620 392 -MKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 392 -~~~~~~~~l~~la~~t~g~ 410 (807)
+.+.+ ..++.++....|-
T Consensus 297 ~~~l~~-e~l~~ia~~~~~~ 315 (450)
T PRK00149 297 GIDLPD-EVLEFIAKNITSN 315 (450)
T ss_pred CCCCCH-HHHHHHHcCcCCC
Confidence 33443 3478888877663
No 196
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=134.03 Aligned_cols=187 Identities=20% Similarity=0.286 Sum_probs=126.9
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|+++.|++.+++.|+..+... +.+.++||+||+||||||+|+++|..+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 467999999999999998876521 234569999999999999999999988652
Q ss_pred ------------------EEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCch
Q 003620 543 ------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGA 600 (807)
Q Consensus 543 ------------------~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~ 600 (807)
|+.+++... .+...|+.+.+.+. .....|++|||+|.+..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------
Confidence 122221110 11345666555542 23456999999998732
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHH
Q 003620 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRAL 679 (807)
Q Consensus 601 ~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~l 679 (807)
...+.||..|+...+ .+++|.+|+.+..|-+.+.+ |+ ..+.|..++.++....++..+++.++. .+..+..|
T Consensus 142 --~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 142 --AAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred --HHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 346788888886432 34444455666788888876 77 489999999999988888877765542 33457778
Q ss_pred HHHcCCCCHHhHHHHHHHHHHH
Q 003620 680 AKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 680 a~~t~g~sgadi~~l~~~A~~~ 701 (807)
++.+.| +.+++.+.+.....+
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHh
Confidence 877765 444555555544433
No 197
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.3e-10 Score=134.49 Aligned_cols=191 Identities=18% Similarity=0.243 Sum_probs=124.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE--------E
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------C 272 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------~ 272 (807)
++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||+||++|+.+++... +
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 567789999999999999998877541 12345799999999999999999999875310 0
Q ss_pred Eechhhhhh-------hhc---hhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003620 273 INGPEIMSK-------LAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~~~-------~~g---~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
-.|..+... +.+ ..-..+|.+.+... .....|+||||+|.|. ....+.|+..|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc
Confidence 001111100 000 11233555554432 2344699999999883 2345677888876
Q ss_pred ccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCcHHHHHH
Q 003620 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 339 ~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~~~dl~~ 417 (807)
.. .++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+....+ ..+..+..++..+.|-.+ ++..
T Consensus 146 PP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALn 219 (944)
T PRK14949 146 PP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALS 219 (944)
T ss_pred cC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHH
Confidence 43 356666678888889888887 65 56889999888888777765543222 233457777877777544 3444
Q ss_pred HHH
Q 003620 418 LCT 420 (807)
Q Consensus 418 l~~ 420 (807)
++.
T Consensus 220 LLd 222 (944)
T PRK14949 220 LTD 222 (944)
T ss_pred HHH
Confidence 443
No 198
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=2.2e-10 Score=130.31 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=130.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE---------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------- 271 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------- 271 (807)
++.+-+|+++.|.+..++.|+..+... ..+..+||+||+||||||+|+++|+.+++...
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 567778999999999999887765431 22457999999999999999999999865211
Q ss_pred ---EEechhhhhh----------hhchhHHHHHHHHHHHHhc----CCeEEEEccchhccCCCCCCchhHHHHHHHHHHH
Q 003620 272 ---CINGPEIMSK----------LAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (807)
Q Consensus 272 ---~v~~~~l~~~----------~~g~~~~~l~~vf~~a~~~----~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (807)
.-+|..+... ........++.+++.+... ...|+||||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 1111111110 0112345677777766432 346999999998742 23456677
Q ss_pred HhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHH
Q 003620 335 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 335 ~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~ 413 (807)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++..... ++..+..++..+.|. .+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gs-lR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGS-AR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 77653 3466777777888889998887 66 568899999999999988776543332 334577888888774 45
Q ss_pred HHHHHHHHHH
Q 003620 414 DLAALCTEAA 423 (807)
Q Consensus 414 dl~~l~~~a~ 423 (807)
++..++..+.
T Consensus 225 ~al~~Ldkai 234 (507)
T PRK06645 225 DAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 199
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.6e-11 Score=134.67 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=124.7
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
+.+|++|.|++.+++.|...+... +.+..+||+||||+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 467999999999999998876531 234569999999999999999999988542
Q ss_pred ------------------EEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCch
Q 003620 543 ------------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGA 600 (807)
Q Consensus 543 ------------------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~ 600 (807)
++.+++.+. .....++.+.+.+.. ....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222222111 113456666555532 2346999999998732
Q ss_pred HHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHH
Q 003620 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRAL 679 (807)
Q Consensus 601 ~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~l 679 (807)
...+.||..|+... ...++|.+|+.+..+-+++.+ |+. .+.|++++.++..+.++..++...+. .+..+..+
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24566777777533 244444455666777778776 775 78899999999988888888665432 23346777
Q ss_pred HHHcCCCCHHhHHHHHHHHHHH
Q 003620 680 AKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 680 a~~t~g~sgadi~~l~~~A~~~ 701 (807)
++.+.| +-+.+.+.+..+..+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 777764 444555555544433
No 200
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.2e-10 Score=131.04 Aligned_cols=187 Identities=18% Similarity=0.230 Sum_probs=126.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456778999999999999998887631 22457899999999999999999999865
Q ss_pred ------------eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++.+- ..-..++.++..+. .....|+||||+|.|-. ...+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 2333333211 12334555555432 23456999999998742 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..+..-.+ .++..+..++..+.| .
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356677777888888888776 66 56888889888887777765544332 233457778877766 3
Q ss_pred HHHHHHHHHHH
Q 003620 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 213 LRdALnLLDQa 223 (702)
T PRK14960 213 LRDALSLTDQA 223 (702)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 201
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.24 E-value=4.2e-11 Score=129.37 Aligned_cols=157 Identities=23% Similarity=0.397 Sum_probs=102.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-------C--eEEEEe
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFISVK 547 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-------~--~~i~v~ 547 (807)
...|.+|.|++++++.|.-....+ ...++||+||||||||++|+++|..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467999999999999876433211 114699999999999999999999872 2 222221
Q ss_pred C-ccc--------cc---------------cccCCc--hHHH---HHHHH-----HHhcCCCeEEEEeccchhhhccCCC
Q 003620 548 G-PEL--------LT---------------MWFGES--EANV---REIFD-----KARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 548 ~-~~l--------~~---------------~~vg~s--e~~i---~~~f~-----~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
+ +++ .. ..+|.. ++.+ ...|+ .|.. .+||+|||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~---GiL~lDEInrl~------ 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR---GYLYIDEVNLLE------ 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCC---CeEEecChHhCC------
Confidence 1 011 00 012210 0000 00111 2222 399999999963
Q ss_pred CCCCCchHHHHHHHHHhcccCCC-----------CCCcEEEEecCCCCC-CCCccccCCCCcceeEEecCCCH-HHHHHH
Q 003620 594 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-DSRHQI 660 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vivi~aTn~~~-~ld~allrpgRfd~~i~~~~p~~-~~r~~I 660 (807)
..+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 345666666665321 234789999999755 58889998 9999999998866 999999
Q ss_pred HHHHh
Q 003620 661 FKACL 665 (807)
Q Consensus 661 l~~~~ 665 (807)
++...
T Consensus 212 l~~~~ 216 (334)
T PRK13407 212 IRRRD 216 (334)
T ss_pred HHHhh
Confidence 98754
No 202
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.24 E-value=3.9e-10 Score=116.70 Aligned_cols=180 Identities=18% Similarity=0.278 Sum_probs=111.8
Q ss_pred cChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhH
Q 003620 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE 287 (807)
Q Consensus 211 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~ 287 (807)
++.+..++.+++++.. ..+.+++|+||+|||||+++++++... +..++.+++..+....
T Consensus 20 ~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 4566777777776531 345689999999999999999999876 4678889988775432
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCC---HHhhcc
Q 003620 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID---PALRRF 364 (807)
Q Consensus 288 ~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld---~al~r~ 364 (807)
..++... ..+.+|+|||++.+..... ....|..+++........+|++++..+..++ +.+.+.
T Consensus 82 ---~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1222222 2245999999998753210 1234555555433333445554444444432 666652
Q ss_pred CccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHHHHHHHH
Q 003620 365 GRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (807)
Q Consensus 365 ~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (807)
..+...+.++.|+.+++..+++.......+. ++..++.++.. -+-...++..++.++.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 2234789999999999999998765433222 23346667664 3334556666665544
No 203
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.24 E-value=1.3e-10 Score=126.78 Aligned_cols=159 Identities=25% Similarity=0.369 Sum_probs=111.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
++..+.+++++.|.++.++.++.++... ..+..+||+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 4567788999999999999998887531 12345677999999999999999999998888888866
Q ss_pred hhhhchhHHHHHHHHHHH-HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCC
Q 003620 280 SKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 280 ~~~~g~~~~~l~~vf~~a-~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld 358 (807)
.. .......+....... ....+.+++|||+|.+... .....|...++... .++.+|.+||.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhch
Confidence 11 111112222221111 1135689999999877211 12234555566543 3456777889888999
Q ss_pred HHhhccCccceEEEeCCCChHHHHHHHHHH
Q 003620 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~P~~~~R~~il~~~ 388 (807)
+++++ |+ ..+.++.|+.+++.++++..
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99998 77 46899999999998877643
No 204
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.1e-10 Score=131.69 Aligned_cols=185 Identities=17% Similarity=0.261 Sum_probs=126.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.+..++.|+..+... .-+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 456778999999999999998777641 123358999999999999999999998762
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 23333221 011234555544432 33456999999998742 234667
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~ 411 (807)
+..|+... .++.+|.+|+++..+.+.+++ |+ ..+.|..++.++-...|+..++.-.+ .++..+..++..+.|-.
T Consensus 140 LKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 140 LKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM 214 (647)
T ss_pred HHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 88787643 366777778889999999988 65 67899999998888888766543222 23345677887777754
Q ss_pred HHHHHHHHH
Q 003620 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
+. ...++.
T Consensus 215 R~-Al~lld 222 (647)
T PRK07994 215 RD-ALSLTD 222 (647)
T ss_pred HH-HHHHHH
Confidence 43 333443
No 205
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.24 E-value=3.1e-10 Score=115.01 Aligned_cols=167 Identities=22% Similarity=0.353 Sum_probs=117.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (807)
....+.++++.|++.+++.|.+....-+. -.+..++||+|+.|||||++++++..+. +..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678899999999999998766543221 1467889999999999999999998876 56778887766
Q ss_pred hhhhhhchhHHHHHHHHHHHH-hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--CCceEEEEEecCCC
Q 003620 278 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 354 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~-~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~viVI~atn~~ 354 (807)
+. .+-.+++... ...+-|||+|++.+= . ++. -...|-.+|++-- ...+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe--~-----~d~---~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFE--E-----GDT---EYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCC--C-----CcH---HHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2333444433 235679999997632 1 111 1245666777532 23578899999986
Q ss_pred CCCCH---------------------HhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC
Q 003620 355 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS 395 (807)
Q Consensus 355 ~~ld~---------------------al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~ 395 (807)
+.++. .+.-..||...+.|..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 44322 222235899999999999999999999988655543
No 206
>PRK05642 DNA replication initiation factor; Validated
Probab=99.24 E-value=1.2e-10 Score=120.86 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=107.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++|+||+|||||+|+++++++. +...+.++..++... ...+.+..+.. .+|+|||++.+.++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh--
Confidence 458999999999999999999764 456777777776542 12333333333 489999999875431
Q ss_pred CCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHhcc
Q 003620 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRK 667 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~~~ 667 (807)
.....|+..++.....++.+|++++..|..+ .|.+.+ ||. ..+.+.+|+.+++.++++.....
T Consensus 114 ----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 ----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1223455555544455677888888776543 678877 884 67778999999999999966654
Q ss_pred CCCCc-cccHHHHHHHcCCCCHHhHHHHHHHHHH
Q 003620 668 SPVSK-DVDLRALAKYTQGFSGADITEICQRACK 700 (807)
Q Consensus 668 ~~~~~-~~dl~~la~~t~g~sgadi~~l~~~A~~ 700 (807)
..+.- +.-++.|++..++ +.+.+.+++..-..
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~ 214 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQ 214 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 43332 2235667766653 66666666655443
No 207
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.23 E-value=1.3e-10 Score=132.68 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhc
Q 003620 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363 (807)
Q Consensus 287 ~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r 363 (807)
.++.|..+..+.-..|.+|++|| +.+..+-..+.+|-..+..+.. .||..+|+.+-||....+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhhh
Confidence 35667778888889999999999 6777777788888888876543 445567877666654443
No 208
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.23 E-value=9.4e-11 Score=128.01 Aligned_cols=175 Identities=19% Similarity=0.321 Sum_probs=127.2
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~ 589 (807)
...++||||.|+|||+|++|++++. +..++.+..+++.+.++-....+-..-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3459999999999999999999886 34688888888877776555455556677776 4469999999999764
Q ss_pred cCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHH
Q 003620 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRfd--~~i~~~~p~~~~r~~Il~~~ 664 (807)
++...+|...+..+....+.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|.+||+..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 23345555555555556667888887888765 477776 887 67788899999999999998
Q ss_pred hccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 665 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 665 ~~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
....++.-+.+ +..+|+... =+.+++..++......|....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 76666553333 456666544 366777777777666665543
No 209
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.23 E-value=5.3e-10 Score=123.01 Aligned_cols=180 Identities=24% Similarity=0.332 Sum_probs=117.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~ 275 (807)
++.+-+|+++.|.+..++.+.+++..+ ...+++|+||||||||++|+++++++. ..++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 456778999999999999998877541 123699999999999999999999874 34677787
Q ss_pred hhhhhhhh-------------ch-------hHHHHHHHHHHHHhc-----CCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 276 PEIMSKLA-------------GE-------SESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 276 ~~l~~~~~-------------g~-------~~~~l~~vf~~a~~~-----~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
.++..... +. ....++.+.+..... .+.+|+|||++.+.+ ....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHH
Confidence 66542210 00 112334444333332 245999999987732 1234
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 409 (807)
.|...++..... ..+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...+++..++...+. ++..++.++..+.|
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 566666655433 2344455556667777776 54 568899999999999988765543322 34456777776643
No 210
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-10 Score=119.62 Aligned_cols=134 Identities=24% Similarity=0.360 Sum_probs=91.8
Q ss_pred cccchhhHHHhhHhhhcCCCCchhhh-hhcccCCC-CCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-ccccCC
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEKF-EKFGMSPS-KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGE 558 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~~-~~~~~~~~-~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~vg~ 558 (807)
.++|++..|+.|.-.+-...++-... .+-.+... .++||.||+|||||.||+.||..++.||-.-++..|. ..|||+
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGE 141 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGE 141 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccch
Confidence 47788888887764442211110000 00112222 3599999999999999999999999999988887775 579998
Q ss_pred chHH-HHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCC
Q 003620 559 SEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (807)
Q Consensus 559 se~~-i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~ 615 (807)
.-.+ +-.+.+.|. .....|++|||||.++.+..+.+-..+-....|...||..++|-
T Consensus 142 DVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 142 DVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 7655 445555432 12345999999999998765443333445677899999999984
No 211
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.22 E-value=3e-10 Score=118.33 Aligned_cols=190 Identities=26% Similarity=0.432 Sum_probs=119.9
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEEe
Q 003620 201 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCIN 274 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~---l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~ 274 (807)
.+.+-+++|.+|.++.+.+ |+.+++. ..-..++|+||||||||||||.|+.....+ |+.++
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 4556678888888877544 3444433 233469999999999999999999887655 66666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh-----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEE
Q 003620 275 GPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~ 349 (807)
... ...+.+|.+|+.+++ ....||||||||.+-...+ ..++- .-.++.|++||
T Consensus 198 At~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP----~VE~G~I~lIG 255 (554)
T KOG2028|consen 198 ATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLP----HVENGDITLIG 255 (554)
T ss_pred ccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccc----eeccCceEEEe
Confidence 432 234568888888765 3568999999998753322 11222 22356788887
Q ss_pred ecC-CCC-CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhc----------CCCC----CCchhhhHHhhhcCCCcHH
Q 003620 350 ATN-RPN-SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 350 atn-~~~-~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~----------~~~~----~~~~~l~~la~~t~g~~~~ 413 (807)
+|. +|. .++.+|.+ |. +.+.+......+-..||..-.. .++. -++.-++.++..+.|-...
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 764 443 56788877 43 3355666666666666653211 1222 1234578888888887666
Q ss_pred HHHHHHHHHHHHHHH
Q 003620 414 DLAALCTEAALQCIR 428 (807)
Q Consensus 414 dl~~l~~~a~~~~~~ 428 (807)
.+.+|--.+.+.+.+
T Consensus 333 aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHHhh
Confidence 665554443343333
No 212
>PRK08727 hypothetical protein; Validated
Probab=99.22 E-value=1.9e-10 Score=119.29 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++|+||+|||||+|+++++.++ +...+.++..++. ..+...++..... .+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEGR--SLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhcC--CEEEEeCcccccCCh--
Confidence 349999999999999999998775 3344455544322 2344455554433 599999999886432
Q ss_pred CCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCc--ceeEEecCCCHHHHHHHHHHHhcc
Q 003620 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEDSRHQIFKACLRK 667 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRf--d~~i~~~~p~~~~r~~Il~~~~~~ 667 (807)
.....+-.+++.+ ...+.-+|+.+...|..+ ++++.+ || ...+.+++|+.+++.+|++.+...
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1122222333333 223334566666677655 788887 87 578899999999999999987654
Q ss_pred CCCCc-cccHHHHHHHcC
Q 003620 668 SPVSK-DVDLRALAKYTQ 684 (807)
Q Consensus 668 ~~~~~-~~dl~~la~~t~ 684 (807)
..+.- +..+..|++.+.
T Consensus 178 ~~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGE 195 (233)
T ss_pred cCCCCCHHHHHHHHHhCC
Confidence 33332 223677777765
No 213
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.22 E-value=2.1e-10 Score=129.20 Aligned_cols=167 Identities=25% Similarity=0.399 Sum_probs=109.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
...++||||+|+|||+|++++++++ +..++++++.++...+...........|.... ..+.+|+|||++.+..+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 3569999999999999999999886 56788899887765543322111111122211 23579999999998643
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC---CCHHhhccCccc--eEEEeCCCChHHHHHHHHHHhcC
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN 391 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~~ 391 (807)
. .....|+..++.+......+|++++..|.. +++.+++ ||. ..+.+..|+.+.|..|++..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 112345566655544445566666666654 4567776 675 57899999999999999987654
Q ss_pred CCCC-CchhhhHHhhhcCCCcHHHHHHHHHH
Q 003620 392 MKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 392 ~~~~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
..+. ++..++.++....+- .+++...+..
T Consensus 284 ~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~ 313 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRSN-VRELEGALNR 313 (405)
T ss_pred cCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 3332 344578888777653 3445444443
No 214
>PRK06893 DNA replication initiation factor; Validated
Probab=99.20 E-value=2e-10 Score=118.99 Aligned_cols=148 Identities=16% Similarity=0.244 Sum_probs=96.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~ 319 (807)
..++|+||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 2333444432211 1111223322 2457999999998864321
Q ss_pred CchhHHHHHHHHHHHHhhcccCCc-eEEEEEecCCCCCCC---HHhhccCccceEEEeCCCChHHHHHHHHHHhc--CCC
Q 003620 320 THGEVERRIVSQLLTLMDGLKSRA-HVIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 393 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~-~viVI~atn~~~~ld---~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~--~~~ 393 (807)
....|+.+++...... .+++++++..|..++ +.+++..++...+.++.|+.++|.++++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234666666555444 355666666676664 78888556667889999999999999986653 444
Q ss_pred CCCchhhhHHhhhcCCC
Q 003620 394 LSDDVDLERIAKDTHGY 410 (807)
Q Consensus 394 ~~~~~~l~~la~~t~g~ 410 (807)
+.++ .+..++.+..|-
T Consensus 181 l~~~-v~~~L~~~~~~d 196 (229)
T PRK06893 181 LSDE-VANFLLKRLDRD 196 (229)
T ss_pred CCHH-HHHHHHHhccCC
Confidence 4443 477788777654
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=2e-10 Score=129.86 Aligned_cols=155 Identities=21% Similarity=0.380 Sum_probs=104.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
.+++||||+|||||+|++++++++ +..++++++.++...+...... .+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999875 3567888888876554332211 1222 22222235789999999988643
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCcc--ceEEEeCCCChHHHHHHHHHHhc-
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK- 390 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf--~~~i~i~~P~~~~R~~il~~~~~- 390 (807)
.. ....|+..++.+......+|+++.+.|..+ .+.+++ || ...+.+.+|+.+.|..|++....
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 21 123455555555555556777666777654 455665 55 35778999999999999987765
Q ss_pred -CCCCCCchhhhHHhhhcCCC
Q 003620 391 -NMKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 391 -~~~~~~~~~l~~la~~t~g~ 410 (807)
++.++++ .+..++....+-
T Consensus 279 ~~~~l~~e-v~~~Ia~~~~~~ 298 (440)
T PRK14088 279 EHGELPEE-VLNFVAENVDDN 298 (440)
T ss_pred cCCCCCHH-HHHHHHhccccC
Confidence 3444443 477888777653
No 216
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=5.9e-10 Score=127.38 Aligned_cols=178 Identities=21% Similarity=0.283 Sum_probs=121.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++.+..|+++.|+++.++.|+.++... ..+..+||+|||||||||+|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 3567889999999999999998887641 123457999999999999999999987531
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ......++.+.+.+. ...+.++||||+|.+. ....+.|
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naL 136 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNAL 136 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHH
Confidence 33444321 112234555443332 2345799999998652 2234556
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+++|.+++.+..+.+.+++ |+ ..+.+..|+..+-...++..+....+. ++..+..++..+.|-.
T Consensus 137 Lk~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 137 LKTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 66666532 356666678888899998887 55 468999999999888887765443322 3345777777776643
No 217
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=3.8e-10 Score=129.31 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=124.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+-+|+++.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 567778999999999999998887541 123468999999999999999999988652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHH
Confidence 34444321 112334555555433 23346999999998842 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..|+... .++.+|.+|+++..+.+.+++ |+ ..+++..++..+-...++..++...+. ++..+..++..+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 77777643 356667777888888888877 55 446777777777666665554433222 33456777777765 3
Q ss_pred HHHHHHHHHHH
Q 003620 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 214 lR~al~lLdq~ 224 (509)
T PRK14958 214 VRDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHHH
Confidence 45555555444
No 218
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.19 E-value=9.1e-11 Score=131.77 Aligned_cols=193 Identities=23% Similarity=0.345 Sum_probs=140.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE-------E-----
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------I----- 544 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~-------i----- 544 (807)
+..|+++.|++.+.+.|...+... +...+.||.||.|||||++||.+|+.+++.- .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 457999999999999999887642 2335699999999999999999999876431 0
Q ss_pred -EEe-C--cccc--ccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC
Q 003620 545 -SVK-G--PELL--TMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 545 -~v~-~--~~l~--~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
.++ | .|++ +.-...+-..+|++-+++.. ..+.|.+|||+|.|. ...+|.||..|+.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc
Confidence 010 0 1111 00011234567777777654 446899999999973 4678999999986
Q ss_pred CCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHH
Q 003620 615 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 693 (807)
Q Consensus 615 ~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~ 693 (807)
+...|++|.||..|..|.+.+++ |+. .+.|...+.++....|+..+.+..+.-+.+ +..+|+.++| |-+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 45578888888888999988886 764 666888999999999999998887775554 5666666665 6677777
Q ss_pred HHHHHHHH
Q 003620 694 ICQRACKY 701 (807)
Q Consensus 694 l~~~A~~~ 701 (807)
++..|...
T Consensus 220 lLDq~i~~ 227 (515)
T COG2812 220 LLDQAIAF 227 (515)
T ss_pred HHHHHHHc
Confidence 77776655
No 219
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.5e-10 Score=125.48 Aligned_cols=188 Identities=23% Similarity=0.270 Sum_probs=129.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+.+|+++.|++..++.|+..+... ..+..+||+||+|+||||+|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 456789999999999999988776541 22457999999999999999999987643
Q ss_pred ------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++.+- ..-..++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 2344444321 123456666666543 2346999999998742 234667
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++..++.++....++..+..... .++..++.++..+.| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356677777888889888887 55 45889889988888888766544332 233457778888766 3
Q ss_pred HHHHHHHHHHHH
Q 003620 412 GADLAALCTEAA 423 (807)
Q Consensus 412 ~~dl~~l~~~a~ 423 (807)
.+++..++..+.
T Consensus 211 lR~alslLdqli 222 (491)
T PRK14964 211 MRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=1.5e-10 Score=110.07 Aligned_cols=121 Identities=45% Similarity=0.670 Sum_probs=81.6
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCCchHH---HHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~se~~---i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
..+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4569999999999999999999998 78888888877654332211111 12233444556678999999998722
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcccCCC----CCCcEEEEecCCCCC--CCCccccCCCCcceeEEecC
Q 003620 589 QRGSSVGDAGGAADRVLNQLLTEMDGMS----AKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 651 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~~----~~~~vivi~aTn~~~--~ld~allrpgRfd~~i~~~~ 651 (807)
.....++..+.... ...++.+|+++|... .+++.+.. ||+..+.+++
T Consensus 99 --------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 --------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred --------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 11223333333322 235678888888877 67777776 9998887763
No 221
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.19 E-value=9.4e-10 Score=114.78 Aligned_cols=128 Identities=22% Similarity=0.243 Sum_probs=82.7
Q ss_pred CeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCC------------CCCCCccccCCCC
Q 003620 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR------------PDIIDPALLRPGR 642 (807)
Q Consensus 575 p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~------------~~~ld~allrpgR 642 (807)
|.||||||++.|- -+.++-|-..|+. .-.=+||.|||| |.-|...||. |
T Consensus 292 pGVLFIDEvHmLD--------------IE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLD--------------IECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhh--------------HHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 6678888877751 1223333333432 112266777776 4455666775 6
Q ss_pred cceeEEecCCCHHHHHHHHHHHhccCCCCccc-cHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003620 643 LDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNP 721 (807)
Q Consensus 643 fd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~ 721 (807)
+ .+|...+++.++.++|++...+...+.-+. -++.|+.....-|=+--.+++.-|...|.+++
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--------------- 416 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--------------- 416 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---------------
Confidence 6 477778899999999999999877655333 36777777665565566667767777776664
Q ss_pred ccccccccccccccccHHHHHHHHhhc
Q 003620 722 EAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 722 ~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
...|..+|++.|-.-+
T Consensus 417 -----------~~~V~~~dVe~a~~lF 432 (450)
T COG1224 417 -----------SKRVEVEDVERAKELF 432 (450)
T ss_pred -----------CCeeehhHHHHHHHHH
Confidence 1257788888886644
No 222
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.18 E-value=6.3e-11 Score=121.51 Aligned_cols=168 Identities=21% Similarity=0.384 Sum_probs=108.9
Q ss_pred CceeeCCCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchH-HHHHHHHHHhcCCCeEEEEeccchhhhcc
Q 003620 517 GVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQR 590 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~-~i~~~f~~a~~~~p~ilfiDEid~l~~~r 590 (807)
.++||||+|+|||+|+++++++. +...+.+++.++...+...... .+..+.+..+ ...+|+||+++.+.++
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-
Confidence 48999999999999999999874 4568888888876655432221 2223323333 3369999999998643
Q ss_pred CCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHh
Q 003620 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~ 665 (807)
.+....|...++.+...++.+|+++...|..+ ++.+.+ ||. ..+.+.+|+.+.|.+|++...
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 33455555555555455667788877777765 556665 877 488889999999999999998
Q ss_pred ccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHH
Q 003620 666 RKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 666 ~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~ 701 (807)
...++.-+.+ +..|++... -+-++|..++.....+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 7776654444 456666654 3667777777665443
No 223
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.9e-10 Score=134.87 Aligned_cols=183 Identities=20% Similarity=0.289 Sum_probs=122.9
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe--------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~-------------- 542 (807)
..+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 468999999999999998776531 123458999999999999999999987531
Q ss_pred -----------EEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHH
Q 003620 543 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 543 -----------~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
++.+++.. ......++.+.+.+.. ....|+||||+|.+. ...++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 12222211 1123345555444332 335699999999873 235677
Q ss_pred HHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCc-cccHHHHHHHcCCC
Q 003620 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~-~~dl~~la~~t~g~ 686 (807)
||..|+... ..+++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+++.++.- +..+..++..+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888643 344555556666777777766 775 688999999999999988877665432 2336667766655
Q ss_pred CHHhHHHHHHH
Q 003620 687 SGADITEICQR 697 (807)
Q Consensus 687 sgadi~~l~~~ 697 (807)
+.+++.+.+..
T Consensus 214 dlr~al~~Lek 224 (585)
T PRK14950 214 SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHH
Confidence 55555555554
No 224
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=6e-10 Score=128.69 Aligned_cols=188 Identities=19% Similarity=0.264 Sum_probs=127.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (807)
++.+-+|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.-
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 567789999999999999998887641 2245799999999999999999999876431
Q ss_pred --------------EEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 271 --------------FCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 271 --------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
+.+++. .......++.+++.+. .....|+||||+|.+. ....+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHH
Confidence 222211 1122345666666542 2344699999998763 1234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..|+... ..+.+|.+|+++..+.+.+++ |+ ..+.+..++..+-...|+..+....+. ++..+..+++.+.|-
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs- 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS- 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-
Confidence 77777643 356667777888888888876 65 457788888888888887666543332 334577777777653
Q ss_pred HHHHHHHHHHHH
Q 003620 412 GADLAALCTEAA 423 (807)
Q Consensus 412 ~~dl~~l~~~a~ 423 (807)
.+++..++..+.
T Consensus 214 lRdAlnLLDqai 225 (709)
T PRK08691 214 MRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHH
Confidence 445555554443
No 225
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=4.6e-10 Score=131.29 Aligned_cols=185 Identities=19% Similarity=0.299 Sum_probs=129.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC---------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--------------- 541 (807)
..+|++|.|++.+++.|...+... ..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 468999999999999998887531 23455899999999999999999998642
Q ss_pred ----------eEEEEeCccccccccCCchHHHHHHHHHHhcCC----CeEEEEeccchhhhccCCCCCCCCchHHHHHHH
Q 003620 542 ----------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++.+- .+...++.+...+...+ ..|++|||+|.+. ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 3333433211 12356777776664432 4699999999973 245778
Q ss_pred HHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcc-ccHHHHHHHcCCC
Q 003620 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~-~dl~~la~~t~g~ 686 (807)
||..|+... ...++|.+|+.+..|-+++.+ |+. .+.|++++.++....++..+++.++.-+ ..+..|+..+.|
T Consensus 141 LLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888643 344455555566778888877 774 6999999999999999988877665533 346777877754
Q ss_pred CHHhHHHHHHHHH
Q 003620 687 SGADITEICQRAC 699 (807)
Q Consensus 687 sgadi~~l~~~A~ 699 (807)
+-+++.+.+....
T Consensus 215 dlr~al~~Lekl~ 227 (614)
T PRK14971 215 GMRDALSIFDQVV 227 (614)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 226
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=6.6e-10 Score=105.63 Aligned_cols=121 Identities=48% Similarity=0.752 Sum_probs=80.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHH---HHHHHHHHHhcCCeEEEEccchhcc
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
.+.+++|+||||||||++++.++..+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 78888888877654332221111 1222333445567899999998762
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccC----CceEEEEEecCCCC--CCCHHhhccCccceEEEeC
Q 003620 315 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~viVI~atn~~~--~ld~al~r~~rf~~~i~i~ 374 (807)
+ .....++..+..... ...+.+|++++... .+++.+.. ||+..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 122344445544432 35678888888776 66777766 887666654
No 227
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=5.2e-10 Score=128.11 Aligned_cols=166 Identities=18% Similarity=0.297 Sum_probs=109.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~ 317 (807)
..++|||++|||||+|+++|++.+ +..++++++.++...+...........|..-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999876 45788999988876655433332222343322 246899999999986542
Q ss_pred CCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC---CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC--C
Q 003620 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--M 392 (807)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~---~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~--~ 392 (807)
. ....|+++++.+....+-+||.+...|. .+++.|++.......+.+..|+.+.|.+||+.++.. +
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1244666666665544445554444443 467888883333567799999999999999987654 3
Q ss_pred CCCCchhhhHHhhhcCCCcHHHHHHHHH
Q 003620 393 KLSDDVDLERIAKDTHGYVGADLAALCT 420 (807)
Q Consensus 393 ~~~~~~~l~~la~~t~g~~~~dl~~l~~ 420 (807)
.+.+ ..++.|+.+..+- .+.|..++.
T Consensus 465 ~l~~-eVi~yLa~r~~rn-vR~LegaL~ 490 (617)
T PRK14086 465 NAPP-EVLEFIASRISRN-IRELEGALI 490 (617)
T ss_pred CCCH-HHHHHHHHhccCC-HHHHHHHHH
Confidence 3333 3477777776543 333443333
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.16 E-value=2.1e-09 Score=110.26 Aligned_cols=164 Identities=23% Similarity=0.445 Sum_probs=101.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
..++||||+|+|||+|+++++++. +..++++++.++...+...... .+.. |..-. ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcCc
Confidence 459999999999999999998874 4568899988876654432221 1122 22221 24569999999988533
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCccceEEEeCCCChHHHHHHHHHHhc--C
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 391 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~--~ 391 (807)
.+....|..+++.+...++.+|+++...|..+ ++.+++...-...+.+..|+.+.|.+|++.... +
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 23446677778777777777777776666654 677777223335889999999999999987654 3
Q ss_pred CCCCCchhhhHHhhhcCCCcHHHHHHHH
Q 003620 392 MKLSDDVDLERIAKDTHGYVGADLAALC 419 (807)
Q Consensus 392 ~~~~~~~~l~~la~~t~g~~~~dl~~l~ 419 (807)
+.++++ -++.++....+ ..+.+..++
T Consensus 184 ~~l~~~-v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 184 IELPEE-VIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp --S-HH-HHHHHHHHTTS-SHHHHHHHH
T ss_pred CCCcHH-HHHHHHHhhcC-CHHHHHHHH
Confidence 444433 35666666544 233444333
No 229
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=6.7e-10 Score=127.79 Aligned_cols=178 Identities=20% Similarity=0.238 Sum_probs=120.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|.+..++.|+.++... .-+..+||+||+||||||+|+++|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 457788999999999999998887641 113479999999999999999999988652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++..- ..-..++.+.+. .......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 334433210 011223333222 2233456999999998842 234667
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~~ 411 (807)
+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++-..+|+..+....+ .++..+..++..+.|-.
T Consensus 140 Lk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 140 LKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred HHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776533 367777788888888888876 65 46789999998888888765544332 23345677777776644
Q ss_pred H
Q 003620 412 G 412 (807)
Q Consensus 412 ~ 412 (807)
.
T Consensus 215 R 215 (624)
T PRK14959 215 R 215 (624)
T ss_pred H
Confidence 3
No 230
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=2.2e-10 Score=116.95 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
..++||||||||||+|+++++...+..++. .... ....+ + ...+++|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH---h--cCCEEEEeccccch--------
Confidence 569999999999999999999887754332 1100 01111 1 22589999999541
Q ss_pred CCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCC--CCccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC
Q 003620 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVS 671 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~--ld~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (807)
.. .|...++.+...++.+||+++..|.. + |++.+ |+. .++.+.+|+.+.+..+++...+..++.
T Consensus 99 ------~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 22222232233456788888876654 4 67766 886 478899999999999999888655443
Q ss_pred cc-ccHHHHHHHcCCCCHHhHHHHHHH
Q 003620 672 KD-VDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 672 ~~-~dl~~la~~t~g~sgadi~~l~~~ 697 (807)
-+ .-++.|++...+ +.+.+.+++..
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 22 236777777653 55565555554
No 231
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.5e-10 Score=121.50 Aligned_cols=178 Identities=26% Similarity=0.399 Sum_probs=118.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCCe-----EEEEeCccccccc---------------cCCch-HHHHHHHHHHhc-
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGESE-ANVREIFDKARQ- 572 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~~-----~i~v~~~~l~~~~---------------vg~se-~~i~~~f~~a~~- 572 (807)
|.++++|||||||||.+++.++.++... ++.|+|..+.+.| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 3459999999999999999999987433 8899987664322 12222 223344444333
Q ss_pred CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCC---CCCccccCCCCcc-eeEE
Q 003620 573 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIY 648 (807)
Q Consensus 573 ~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~---~ld~allrpgRfd-~~i~ 648 (807)
...-|+++||+|.|..+.+ .++-+|+...+.. ..++.+|+.+|..+ .+||.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 4457999999999986521 5666666665544 56789999999864 67887766 433 4589
Q ss_pred ecCCCHHHHHHHHHHHhccC---CCCccccHHHHHHHcCCCCH--HhHHHHHHHHHHHHHHHHH
Q 003620 649 IPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAKYTQGFSG--ADITEICQRACKYAIRENI 707 (807)
Q Consensus 649 ~~~p~~~~r~~Il~~~~~~~---~~~~~~dl~~la~~t~g~sg--adi~~l~~~A~~~a~~~~~ 707 (807)
||+++.+|...|++...+.. +.-.+.-++.+|..+..-+| +---.+|+.|+..|-++..
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~ 250 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGS 250 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999888643 11122224444544433333 3333578888888887653
No 232
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.1e-09 Score=131.39 Aligned_cols=176 Identities=19% Similarity=0.227 Sum_probs=118.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++.+.+|++|.|.+..++.|+.++... ..+..+||+||+||||||++++||+.+++.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 3567789999999999999998887641 123358999999999999999999998642
Q ss_pred ----------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCeEEEEccchhccCCCCCCchhHHHHHH
Q 003620 270 ----------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 270 ----------------~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 222222110 012334443332 2334557999999998842 234
Q ss_pred HHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcC
Q 003620 330 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTH 408 (807)
Q Consensus 330 ~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~ 408 (807)
+.|++.|+.... ++++|.+|+.++.|.+.+++ |. ..+.|..+..++-.++|+..++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 668888876543 56666677888888888887 55 568888888888887887766443332 3334566666666
Q ss_pred C
Q 003620 409 G 409 (807)
Q Consensus 409 g 409 (807)
|
T Consensus 213 G 213 (824)
T PRK07764 213 G 213 (824)
T ss_pred C
Confidence 5
No 233
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.6e-09 Score=125.12 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=122.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 467778999999999999998887641 123358999999999999999999987642
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
++.+++... ..-..++.+.+.+ ......|+||||+|.+-. ...+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 222222110 0123344443333 223446999999998742 2346
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 409 (807)
.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..+.|..++..+-.+.++..++..... ++..+..++..+.|
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777787643 367777777888899999887 54 568888888888777777665543322 33345666665544
Q ss_pred CcHHHHHHHHHH
Q 003620 410 YVGADLAALCTE 421 (807)
Q Consensus 410 ~~~~dl~~l~~~ 421 (807)
..+++..++..
T Consensus 212 -dlR~aln~Ldq 222 (584)
T PRK14952 212 -SPRDTLSVLDQ 222 (584)
T ss_pred -CHHHHHHHHHH
Confidence 33344444433
No 234
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.14 E-value=1.2e-09 Score=126.40 Aligned_cols=180 Identities=21% Similarity=0.303 Sum_probs=115.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEEEechh
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPE 277 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~ 277 (807)
+.|.|-++++++|..++.-.+.. -.++..++|+|+||||||++++.+..++. ..++.|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56788888888888777543321 12333457999999999999999987651 4578999954
Q ss_pred hhhh----------hh------c-hhHHHHHHHHHHHHh--cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003620 278 IMSK----------LA------G-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 278 l~~~----------~~------g-~~~~~l~~vf~~a~~--~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
+... .. | .....+..+|..... ....||+|||||.|..+. ..++-.|+.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 10 1 122345566665422 335699999999997542 123333444332
Q ss_pred ccCCceEEEEEecCCC---CCCCHHhhccCccc-eEEEeCCCChHHHHHHHHHHhcCCC-CCCchhhhHHhhhc
Q 003620 339 LKSRAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDT 407 (807)
Q Consensus 339 ~~~~~~viVI~atn~~---~~ld~al~r~~rf~-~~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~l~~la~~t 407 (807)
.....++|||++|.. +.+++.+++ ||. .++.|++++.++..+||+..+.... ..++..++.+|+..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 234578999999864 456777776 544 3478899999999999988776432 22334466666543
No 235
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.14 E-value=9.6e-10 Score=121.67 Aligned_cols=217 Identities=28% Similarity=0.356 Sum_probs=131.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhh----cCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hh
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKS----IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KL 282 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~----l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~ 282 (807)
.|.|.++.++.+...+...++.-..... -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3899999999887666321111100000 011 12458999999999999999999999999999998877643 46
Q ss_pred hchh-HHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCch--hH-HHHHHHHHHHHhhcccC-----------Cc
Q 003620 283 AGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHG--EV-ERRIVSQLLTLMDGLKS-----------RA 343 (807)
Q Consensus 283 ~g~~-~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~--~~-~~~v~~~Ll~~ld~~~~-----------~~ 343 (807)
.|.. +..+...++.+ ....++||||||+|.+.++...++. ++ ...+...|+..|++... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 34444444422 3456789999999999875432211 11 12466778888865321 12
Q ss_pred eEEEEEecCCCC--------------------------C------------------------CCHHhhccCccceEEEe
Q 003620 344 HVIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDI 373 (807)
Q Consensus 344 ~viVI~atn~~~--------------------------~------------------------ld~al~r~~rf~~~i~i 373 (807)
+.++|.|+|-.- . +.|++ .+|++..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeec
Confidence 456666655410 0 11222 2588888888
Q ss_pred CCCChHHHHHHHHHH----hc---------CCCCC-CchhhhHHhhh--cCCCcHHHHHHHHHHHHHHHH
Q 003620 374 GVPDEVGRLEVLRIH----TK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCI 427 (807)
Q Consensus 374 ~~P~~~~R~~il~~~----~~---------~~~~~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~ 427 (807)
.+.+.+...+|+... .+ ++.+. ++.-++.+++. ...|-++.+..++....+..+
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 888888888887542 21 11111 22335566654 345666677776666555444
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.13 E-value=3.9e-09 Score=109.69 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=93.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~ 318 (807)
+..++|+||+|||||+|++++++.+. ..+.+++....... ...+++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 35799999999999999999998754 33445554332211 1122222221 2589999999885432
Q ss_pred CCchhHHHHHHHHHHHHhhcccCCce-EEEEEecCCCCC---CCHHhhccCccc--eEEEeCCCChHHHHHHHHHHhc--
Q 003620 319 KTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK-- 390 (807)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~-viVI~atn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~-- 390 (807)
.....|..+++.....++ -+++.+++.|.. +.|.+++ |+. ..+.+..|+.+++.++++....
T Consensus 114 --------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 --------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred --------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 122345555555444444 345555556555 5788988 664 7889999999999999987543
Q ss_pred CCCCCCchhhhHHhhhcCCCc
Q 003620 391 NMKLSDDVDLERIAKDTHGYV 411 (807)
Q Consensus 391 ~~~~~~~~~l~~la~~t~g~~ 411 (807)
++.+.++ -++.++.+..+-.
T Consensus 184 ~~~l~~~-v~~~L~~~~~~d~ 203 (235)
T PRK08084 184 GFELPED-VGRFLLKRLDREM 203 (235)
T ss_pred CCCCCHH-HHHHHHHhhcCCH
Confidence 3444443 4777887776643
No 237
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.4e-09 Score=124.65 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=120.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 268 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 268 (807)
.++.+-+|+++.|.+..++.+...+... ..+..+||+||+|+||||+|+++|..+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567789999999999999988776431 22456999999999999999999998753
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 269 -------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 269 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
.++.+++.. ...-..++.+...+.. ....|++|||+|.+-. .....
T Consensus 76 C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~Na 138 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNA 138 (605)
T ss_pred cHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHH
Confidence 122333211 0122345666554433 2335999999998732 13356
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (807)
|+..|+... ..+++|.+|+.+..+.+.+++ |+ ..+++..++..+....++..+..... .++..+..++..+.|-
T Consensus 139 LLKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 139 LLKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 777777643 356777777888999999887 65 46899999998888888765543322 2233467777777664
No 238
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.4e-09 Score=122.60 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=121.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+..|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+.+|+.+.+
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 456778999999999999988777541 12345899999999999999999998764
Q ss_pred ------------eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++..- ..-..++.+++.+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 2233332110 11223445544433 23456999999987742 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..|+... ..+.+|.+|+++..+.+.+++ |. ..+++..++.++-...++..++...+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd- 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS- 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777543 356666677778888888877 55 668999998888777776655433322 334467777777553
Q ss_pred HHHHHHHHH
Q 003620 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.+++..++.
T Consensus 214 lR~alnlLe 222 (546)
T PRK14957 214 LRDALSLLD 222 (546)
T ss_pred HHHHHHHHH
Confidence 333333333
No 239
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.12 E-value=1.3e-09 Score=115.19 Aligned_cols=132 Identities=24% Similarity=0.294 Sum_probs=90.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh------hhhhhhchhHHHH---------------------HHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESNL---------------------RKAF 294 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~------l~~~~~g~~~~~l---------------------~~vf 294 (807)
+.++||+||||||||++|+++|..++.+++.++|.. +++.+.+.....+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 568999999999999999999999999999998743 3333222111110 0112
Q ss_pred HHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--------------CCceEEEEEecCCCC-----
Q 003620 295 EEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN----- 355 (807)
Q Consensus 295 ~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~viVI~atn~~~----- 355 (807)
... . ...++++||++.+-+ .+...|+..|+.-. .+..+.||+|+|...
T Consensus 101 ~A~-~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 LAV-R-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHH-H-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 212 2 346999999987532 23455666664311 223667899999752
Q ss_pred CCCHHhhccCccceEEEeCCCChHHHHHHHHHHh
Q 003620 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 356 ~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~ 389 (807)
.+++++.+ || ..+.++.|+.++-.+|++.+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888887 87 578999999999999998764
No 240
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.12 E-value=4.3e-10 Score=121.75 Aligned_cols=161 Identities=23% Similarity=0.371 Sum_probs=105.0
Q ss_pred cccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-------CeEEEE-e
Q 003620 476 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV-K 547 (807)
Q Consensus 476 ~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-------~~~i~v-~ 547 (807)
+...|.+|.|++++|..|...+..| ...|+||.||+|||||++|++++..+. .+|... +
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4568999999999999998765543 124799999999999999999988763 223200 0
Q ss_pred Ccccc-----c---------------cc----cCCchHH------HHHHHHHHh---------cCCCeEEEEeccchhhh
Q 003620 548 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 588 (807)
Q Consensus 548 ~~~l~-----~---------------~~----vg~se~~------i~~~f~~a~---------~~~p~ilfiDEid~l~~ 588 (807)
.+++. . .+ .|.++.. +...|.... +..-.+||+|||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 01100 0 00 1112221 111121110 11124999999999743
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcccC---------CC--CCCcEEEEecCCCCC-CCCccccCCCCcceeEEecCCC-HH
Q 003620 589 QRGSSVGDAGGAADRVLNQLLTEMDG---------MS--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-ED 655 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~---------~~--~~~~vivi~aTn~~~-~ld~allrpgRfd~~i~~~~p~-~~ 655 (807)
.+++.||..|+. .. ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 159 --------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 159 --------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred --------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 455556666543 11 134788888888765 58899998 999999999997 59
Q ss_pred HHHHHHHHHh
Q 003620 656 SRHQIFKACL 665 (807)
Q Consensus 656 ~r~~Il~~~~ 665 (807)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 241
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.12 E-value=3.3e-10 Score=124.00 Aligned_cols=132 Identities=28% Similarity=0.435 Sum_probs=91.8
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccc--cccCCchHHH------------HHHHHHHhcCCCeEEEE
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVLFF 580 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~--~~vg~se~~i------------~~~f~~a~~~~p~ilfi 580 (807)
.+++||.||||||||++|+++|..++.+|+.+.+..-+. ..+|...-.. +.+|...+ +|+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 466999999999999999999999999999998764321 1122211111 12222222 49999
Q ss_pred eccchhhhccCCCCCCCCchHHHHHHHHHhcccC----------CCCCCcEEEEecCCC-----CCCCCccccCCCCcce
Q 003620 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQ 645 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~----------~~~~~~vivi~aTn~-----~~~ld~allrpgRfd~ 645 (807)
|||+.. ...+.+.||..|+. +.-...++|++|+|. -..|.+|+++ ||..
T Consensus 119 DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 119 DEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred eccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 999884 34567777777765 223467899999994 3457889999 9999
Q ss_pred eEEecCC-CHHHHHHHHHHHhc
Q 003620 646 LIYIPLP-DEDSRHQIFKACLR 666 (807)
Q Consensus 646 ~i~~~~p-~~~~r~~Il~~~~~ 666 (807)
.+++++| +.++...++.....
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEecCCCCchHHHHHHHHhCcc
Confidence 9999999 55555555554443
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.12 E-value=1e-09 Score=123.87 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~ 319 (807)
.+++||||+|+|||+|++++++.+ +..+++++..++...+.......-...|.... ..+.+|+|||++.+..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56778888876655433222111111233322 3467999999998864321
Q ss_pred CchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC---CCCHHhhccCccc--eEEEeCCCChHHHHHHHHHHhcCCCC
Q 003620 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 394 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~---~ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~~~~~ 394 (807)
....++..++.+......+|++++..|. .+++.+++ ||. ..+.+..|+.+.|..|++..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1234555555443344556666655554 45678877 774 78899999999999999877654332
Q ss_pred C-CchhhhHHhhhcCC
Q 003620 395 S-DDVDLERIAKDTHG 409 (807)
Q Consensus 395 ~-~~~~l~~la~~t~g 409 (807)
. ++..++.++....+
T Consensus 290 ~l~~evl~~la~~~~~ 305 (445)
T PRK12422 290 RIEETALDFLIEALSS 305 (445)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 2 23346667776654
No 243
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.11 E-value=6.2e-10 Score=111.77 Aligned_cols=142 Identities=22% Similarity=0.313 Sum_probs=97.8
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCCe------------------------EEEEeCccccccccCCchHHHHHHHHHH
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDKA 570 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~~f~~a 570 (807)
+..+||+||+|+|||++|++++..+... +..+.... . .-+...++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence 4569999999999999999999986431 22221110 0 01234666666666
Q ss_pred hc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCccee
Q 003620 571 RQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 646 (807)
Q Consensus 571 ~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~ 646 (807)
.. ....|+||||+|.+.. ...+.||..|+... ...++|.+||.++.|.+++.+ |+. .
T Consensus 89 ~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~-~ 149 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ-V 149 (188)
T ss_pred ccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-E
Confidence 54 3457999999999743 34677888887733 344455556677899999987 774 8
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCC
Q 003620 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g 685 (807)
+.|++|+.++..++++.. +++ +..+..+++.++|
T Consensus 150 ~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999999999999776 243 3346677766654
No 244
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.11 E-value=4.2e-10 Score=121.98 Aligned_cols=155 Identities=21% Similarity=0.315 Sum_probs=100.8
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC-------CeEE-------
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFI------- 544 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~-------~~~i------- 544 (807)
.|..|.|++++|..|.-.+.-| ...+++|.|+||+||||+++++++.+. .+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999998876544332 124699999999999999999998872 2221
Q ss_pred ------EE--eC-------------ccccc-----cccCCch--HH--------HHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 545 ------SV--KG-------------PELLT-----MWFGESE--AN--------VREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 545 ------~v--~~-------------~~l~~-----~~vg~se--~~--------i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
.. .. .++-. ..+|... +. -..++.+|.. .+||+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~---GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR---GILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC---CEEEecChHhCC-
Confidence 00 00 11111 1222210 00 0112223332 499999999973
Q ss_pred ccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCCcEEEEecCCCCC-CCCccccCCCCcceeEEecCCCH-H
Q 003620 589 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-D 655 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vivi~aTn~~~-~ld~allrpgRfd~~i~~~~p~~-~ 655 (807)
..+++.||..|+.-. ...++++++|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 345566666664311 124688899988665 68889998 9999999999975 8
Q ss_pred HHHHHHHHHh
Q 003620 656 SRHQIFKACL 665 (807)
Q Consensus 656 ~r~~Il~~~~ 665 (807)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 9999998854
No 245
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2e-09 Score=124.82 Aligned_cols=185 Identities=15% Similarity=0.230 Sum_probs=122.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+++++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 456778999999999999998887641 123458999999999999999999988652
Q ss_pred ------------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHH
Q 003620 270 ------------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 270 ------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
++.+++.. ...-..++.+++.+.. ....|++|||+|.+...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 22222211 1122346666655432 22359999999987422
Q ss_pred HHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhh
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~ 406 (807)
..+.|+..++... ..+.+|.+|+++..+.+.+++ |+ ..+++..++.++..+.++..+....+. ++..+..++..
T Consensus 140 a~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2355666666532 356667777888888888877 55 568898888888888887665433322 33447777777
Q ss_pred cCCCcHHHHHHHHH
Q 003620 407 THGYVGADLAALCT 420 (807)
Q Consensus 407 t~g~~~~dl~~l~~ 420 (807)
+.| ..+++..++.
T Consensus 215 s~G-slR~al~lLd 227 (618)
T PRK14951 215 ARG-SMRDALSLTD 227 (618)
T ss_pred cCC-CHHHHHHHHH
Confidence 766 3444444443
No 246
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.3e-09 Score=124.58 Aligned_cols=187 Identities=21% Similarity=0.309 Sum_probs=126.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+.+|+++.|.+..++.|+..+... ..+..+||+||+|||||++|+.+|+.+++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456778999999999999998887641 22456899999999999999999998753
Q ss_pred ------------eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++. .+.....++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 22333331 1123345666666544 23346999999998742 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..++.. ...+++|.+|+.++.+.+.+++ |+ ..++|..|+..+-..+++..++...+. ++..+..++..+.| .
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777654 2356666677788999999887 65 457899999888888887766543332 33456777777765 4
Q ss_pred HHHHHHHHHHH
Q 003620 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 214 ~R~al~~Ldq~ 224 (559)
T PRK05563 214 MRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHH
Confidence 44544444433
No 247
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.8e-09 Score=124.41 Aligned_cols=183 Identities=21% Similarity=0.300 Sum_probs=123.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE---Eechh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC---INGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~---v~~~~ 277 (807)
+..+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|..+.+.-.. -.|..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 457789999999999999998887641 123468999999999999999999987653110 01110
Q ss_pred h----------h--hhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccC
Q 003620 278 I----------M--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (807)
Q Consensus 278 l----------~--~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (807)
. . ..........++.+.+.+.. ....|++|||+|.+.. .....|+..|+..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP-- 145 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP-- 145 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--
Confidence 0 0 00000123446777666543 3446999999998742 2346677777764
Q ss_pred CceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 342 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 342 ~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
...+++|.+|+.++.+.+.+++ |+ ..+.+..++..+-..+++..+....+. ++..+..++..+.|-.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL 213 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 3466777778888999999887 66 468999999998888887655433322 2334667777776643
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.10 E-value=1.3e-09 Score=112.03 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=113.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe------EEEE
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCI 273 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------~i~v 273 (807)
+++.+-+++++.|.+.+++-|...+.- .-..++|||||||||||+.++++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 456777899999999999888766543 123479999999999999999999998762 2333
Q ss_pred echhhhhhhhchhHHHHHHHHHHHH---------hcCC-eEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCc
Q 003620 274 NGPEIMSKLAGESESNLRKAFEEAE---------KNAP-SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (807)
Q Consensus 274 ~~~~l~~~~~g~~~~~l~~vf~~a~---------~~~p-~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (807)
+.++-.+.... ..++.. |.... .+.| -|++|||.|.+.. .....|...|+....
T Consensus 95 naSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--
Confidence 33332222111 111111 11111 1222 6999999998752 344678888887544
Q ss_pred eEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCC
Q 003620 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 344 ~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~ 410 (807)
.+.+|..||.++.|...+.+ |..+ +.|+....+.-...|+.....-.+. ++..+..++..+.|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 56666788999988877776 5533 4556655555555565554332222 333477788777664
No 249
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.4e-09 Score=125.35 Aligned_cols=187 Identities=18% Similarity=0.260 Sum_probs=123.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+-+|+++.|.+..++.|..++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999988877641 123458999999999999999999998652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ......++.++..+.. ....|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 12222210 1123456666665532 2346999999987742 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|++++.+.+.+++ |+ ..+++..++.++-...+...+..-.+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs- 213 (527)
T PRK14969 140 LKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS- 213 (527)
T ss_pred HHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777633 356677777788888877776 54 567888898888777776555332222 333466777776654
Q ss_pred HHHHHHHHHHH
Q 003620 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 214 lr~al~lldqa 224 (527)
T PRK14969 214 MRDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHHH
Confidence 34454555444
No 250
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.1e-09 Score=111.39 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=63.3
Q ss_pred eEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--------CCCcEEEEecC----CCCCCCCccccCCCCc
Q 003620 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 643 (807)
Q Consensus 576 ~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~vivi~aT----n~~~~ld~allrpgRf 643 (807)
.|+||||||.++.+.+.+.. +-.-..|...||-.++|-. ..+.+++||+- ..|+.|=|.|- |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999987653321 2233457778888888742 34678888887 45888888875 799
Q ss_pred ceeEEecCCCHHHHHHHHH
Q 003620 644 DQLIYIPLPDEDSRHQIFK 662 (807)
Q Consensus 644 d~~i~~~~p~~~~r~~Il~ 662 (807)
.-.++....+.+....||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999999888883
No 251
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=3.5e-09 Score=117.89 Aligned_cols=176 Identities=23% Similarity=0.288 Sum_probs=117.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE---------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 270 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------- 270 (807)
++..+.+|+++.|.+..++.++..+... ..+.++|||||||+|||+++++++..+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3567889999999999999998887641 2245799999999999999999999876421
Q ss_pred ---EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCc
Q 003620 271 ---FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (807)
Q Consensus 271 ---i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (807)
+.+++. .......++.+++.+.. ..+.++++||+|.+.. ...+.|+..++... .
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~--~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPP--A 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCC--C
Confidence 112211 11123456666665532 2346999999987742 12355666665432 2
Q ss_pred eEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 003620 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 344 ~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 409 (807)
..++|.+++.+..+.+++++ |+ ..+++..|+..+...++...+....+ .++..++.++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 44555566777888888887 54 35889999988888888765544332 233456777766544
No 252
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.09 E-value=6.7e-09 Score=107.61 Aligned_cols=177 Identities=16% Similarity=0.302 Sum_probs=107.1
Q ss_pred CCCcccc--cChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 003620 204 EVGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 278 (807)
Q Consensus 204 ~~~~~~i--~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l 278 (807)
+.+|+++ ++-+..+..++++.. +.....+++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3455553 344555566665543 12345689999999999999999999875 557788887665
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceE-EEEEecCCCC--
Q 003620 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 355 (807)
Q Consensus 279 ~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-iVI~atn~~~-- 355 (807)
... + .......+|+|||+|.+... ....|..+++........ ++++++..+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 1 11224569999999976321 123455666555444443 4444443332
Q ss_pred CCCHHhhccCcc--ceEEEeCCCChHHHHHHHHHHhcC--CCCCCchhhhHHhhhcCCCcHHHHHHHHHH
Q 003620 356 SIDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 356 ~ld~al~r~~rf--~~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
.+.+.+.+ || ...+.+++|+..++..+++..... +.+.+ .-+..++....| ....+..++..
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~-~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLAD-EVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhccC-CHHHHHHHHHH
Confidence 34566765 55 468999999998888888765443 33333 346666664443 23344444443
No 253
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.09 E-value=2.2e-09 Score=127.20 Aligned_cols=181 Identities=24% Similarity=0.383 Sum_probs=117.2
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 003620 201 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~---~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
.+.+-+++++.|.++.+. .+++++.. ....+++|+|||||||||+|+++++..+..++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 456778999999998874 45555542 22347999999999999999999999999888888643
Q ss_pred hhhhhhchhHHHHHHHHHHHH-----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC
Q 003620 278 IMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~-----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 352 (807)
.. ...++.++..+. .....+|||||+|.+... ....|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 112333333331 134569999999987421 1233554443 34677776654
Q ss_pred C-C-CCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhc-------C--CCCCCchhhhHHhhhcCCCcHHHHHHHHHH
Q 003620 353 R-P-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK-------N--MKLSDDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 353 ~-~-~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~-------~--~~~~~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
. + ..+++++.+ |. ..+.+++++.++...+++..+. . +.+ ++..++.++....|- .+.+..++..
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~GD-~R~lln~Le~ 220 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANGD-ARSLLNALEL 220 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 3 2 457888887 43 4588999999999999987654 1 222 233467777766543 3333333333
No 254
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=2.8e-09 Score=118.25 Aligned_cols=176 Identities=22% Similarity=0.338 Sum_probs=120.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
++.++..|+++.|.++.++.+++.+... ..+..+||+||||+|||++++++++.+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456778999999999999998877531 234579999999999999999999887432
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHhc----CCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
++.+++.. ......++.+++.+... ...+++|||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 23333321 11233466666665432 235999999987732 23456
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 409 (807)
|+..++... ..+++|.+|++++.+.+.+++ |+ ..++++.|+..+..++++..++...+. ++..+..++..+.|
T Consensus 137 Ll~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 137 LLKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777776532 356666677888888888887 66 468999999999988888766544322 23345666666654
No 255
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.09 E-value=3.6e-09 Score=105.11 Aligned_cols=196 Identities=22% Similarity=0.342 Sum_probs=135.2
Q ss_pred eeeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeC
Q 003620 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 548 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~ 548 (807)
+...+.+...++.|++.+|+.|.+.-..... | .|..++||+|.-|||||+|+||+-++. +...+.|+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 3345568899999999999999776443222 1 345679999999999999999998886 456888888
Q ss_pred ccccccccCCchHHHHHHHHHHhcCC-CeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--CCCcEEEEe
Q 003620 549 PELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIG 625 (807)
Q Consensus 549 ~~l~~~~vg~se~~i~~~f~~a~~~~-p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~vivi~ 625 (807)
.++. .+-.+++..+..+ .-|||+|+.-. +.+ +.....|-..|||-- ...+|+|.|
T Consensus 122 ~dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF----------e~g---d~~yK~LKs~LeG~ve~rP~NVl~YA 179 (287)
T COG2607 122 EDLA---------TLPDLVELLRARPEKFILFCDDLSF----------EEG---DDAYKALKSALEGGVEGRPANVLFYA 179 (287)
T ss_pred HHHh---------hHHHHHHHHhcCCceEEEEecCCCC----------CCC---chHHHHHHHHhcCCcccCCCeEEEEE
Confidence 8774 3445555554433 35999999644 111 223444555566643 246899999
Q ss_pred cCCCCCCCCc--------------------cccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccc-cHHH----HH
Q 003620 626 ATNRPDIIDP--------------------ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRA----LA 680 (807)
Q Consensus 626 aTn~~~~ld~--------------------allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~-dl~~----la 680 (807)
|+||...|.. -+.-..||...+.|++++.++..+|+..+.++..++.+. .++. -|
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WA 259 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWA 259 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999765531 111124999999999999999999999999998877532 2322 23
Q ss_pred HHcCCCCHHhHHHHHHHH
Q 003620 681 KYTQGFSGADITEICQRA 698 (807)
Q Consensus 681 ~~t~g~sgadi~~l~~~A 698 (807)
..-.|-||+--.+.++..
T Consensus 260 t~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 260 TTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HhcCCCccHhHHHHHHHH
Confidence 344667887655555443
No 256
>PHA02244 ATPase-like protein
Probab=99.08 E-value=1.9e-09 Score=115.94 Aligned_cols=123 Identities=23% Similarity=0.320 Sum_probs=79.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCc----cccccccCCchHHH-HHHHHHHhcCCCeEEEEeccchhhhc
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~----~l~~~~vg~se~~i-~~~f~~a~~~~p~ilfiDEid~l~~~ 589 (807)
...+||+||||||||++|+++|..++.+|+.++.- ++.. +++...... ..++...+. ..++||||++.+.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~~--GgvLiLDEId~a~p~ 195 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFKK--GGLFFIDEIDASIPE 195 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhhc--CCEEEEeCcCcCCHH
Confidence 35699999999999999999999999999998742 1111 111111111 123333332 369999999986431
Q ss_pred cCCCCCCCCchHHHHHHHHHh-----cccCC-CCCCcEEEEecCCCC-----------CCCCccccCCCCcceeEEecCC
Q 003620 590 RGSSVGDAGGAADRVLNQLLT-----EMDGM-SAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~-----~ld~~-~~~~~vivi~aTn~~-----------~~ld~allrpgRfd~~i~~~~p 652 (807)
....++.++. ..++. ....++-+|+|+|.+ ..|++|++. ||- .|+++.|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2233334432 11111 123578899999973 467899998 996 7999999
Q ss_pred CH
Q 003620 653 DE 654 (807)
Q Consensus 653 ~~ 654 (807)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 84
No 257
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.4e-09 Score=117.07 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=121.5
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe----E--EEE----
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----F--ISV---- 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~----~--i~v---- 546 (807)
+..++++.|.+++++.|...+... +.+..+||+||+|+|||++|+.+|..+.+. + ...
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 457889999999999998876532 233469999999999999999999987441 0 000
Q ss_pred ------------eCcccc--ccccCC---------chHHHHHHHHHH----hcCCCeEEEEeccchhhhccCCCCCCCCc
Q 003620 547 ------------KGPELL--TMWFGE---------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGG 599 (807)
Q Consensus 547 ------------~~~~l~--~~~vg~---------se~~i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 599 (807)
+.+++. ..-.++ +...+|.+-+.. ......|++|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 011111 000000 123344444332 23456799999999973
Q ss_pred hHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHH
Q 003620 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 679 (807)
Q Consensus 600 ~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~l 679 (807)
....+.||..|+... .+.++|..|+.|+.+.|.+.+ |+ ..+.+++|+.++..++++......+++ +..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 234677888888633 344555556778888888876 88 599999999999999998743322222 2235667
Q ss_pred HHHcCCCCHHhHHHHHHHHH
Q 003620 680 AKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 680 a~~t~g~sgadi~~l~~~A~ 699 (807)
++.+.| +.+...++.....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 776665 4444445554443
No 258
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=1.6e-09 Score=122.34 Aligned_cols=166 Identities=26% Similarity=0.375 Sum_probs=112.3
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHh--------cCCCeEEEEeccch
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR--------QSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~--------~~~p~ilfiDEid~ 585 (807)
+.+-+||+||||-||||||+.+|+.+|..++.|+++|=. +...++.....|- .+.|.+|++||||.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 345589999999999999999999999999999999843 3334443333332 25789999999987
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHhccc-------CCCC------------CCcEEEEecCCCCCCCCccc--cCCCCcc
Q 003620 586 IATQRGSSVGDAGGAADRVLNQLLTEMD-------GMSA------------KKTVFIIGATNRPDIIDPAL--LRPGRLD 644 (807)
Q Consensus 586 l~~~r~~~~~~~~~~~~~v~~~lL~~ld-------~~~~------------~~~vivi~aTn~~~~ld~al--lrpgRfd 644 (807)
-. ...++.+|..+. |-.. .-..-|||.+|. ..-||| || -|-
T Consensus 399 a~--------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A 460 (877)
T KOG1969|consen 399 AP--------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFA 460 (877)
T ss_pred Cc--------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cce
Confidence 32 233344443333 1111 012457777884 445766 35 488
Q ss_pred eeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHH
Q 003620 645 QLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
.+|+|++|......+=|+....+..+. .|...|...++ ++..||++.++.....|.+..
T Consensus 461 ~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 461 EIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred EEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 999999999888777777777666555 34444444444 223499999999988887643
No 259
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=4.8e-09 Score=119.59 Aligned_cols=191 Identities=21% Similarity=0.295 Sum_probs=120.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------E-EE
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-FC 272 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~-i~ 272 (807)
..++..|+++.|++..++.|+..+... ..+..+||+||+|+||||+|+.+|..+++. + ..
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 456778999999999999998887541 123458999999999999999999987631 0 00
Q ss_pred Eechhhhh----------hhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003620 273 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
.+|..+.. ......-..++.+...+. .....|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 11111110 000111233455544433 23456999999997742 233567777765
Q ss_pred ccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHH
Q 003620 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 339 ~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~ 417 (807)
.. ..+++|.+|+.++.+.+++++ |+ ..+.+..|+..+...++...++...+. ++..+..++..+.|- .+++..
T Consensus 146 pp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~ 219 (486)
T PRK14953 146 PP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAAS 219 (486)
T ss_pred CC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 43 345555566777888888877 55 468899999999988888776544432 233466677666553 333333
Q ss_pred HHH
Q 003620 418 LCT 420 (807)
Q Consensus 418 l~~ 420 (807)
++.
T Consensus 220 ~Ld 222 (486)
T PRK14953 220 LLD 222 (486)
T ss_pred HHH
Confidence 333
No 260
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2e-09 Score=117.04 Aligned_cols=176 Identities=18% Similarity=0.284 Sum_probs=116.1
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccccc--cc
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WF 556 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~--~v 556 (807)
+|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+....-.-+|+..- +-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 6899999999999998876421 234568999999999999999999976321111111122110 01
Q ss_pred CC--chHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC
Q 003620 557 GE--SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 557 g~--se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~ 630 (807)
|. +-..++.+.+.+. .....|++||++|.+. ....|.||..|+.. ..++++|.+|+.+
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEep--p~~t~~il~~~~~ 133 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEP--PKGVFIILLCENL 133 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCC--CCCeEEEEEeCCh
Confidence 11 2235666665433 3445799999998862 34578889999863 3344555555778
Q ss_pred CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCH
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG 688 (807)
Q Consensus 631 ~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sg 688 (807)
+.|-|.+.+ |+. .++|++|+.++....++..... ++ +..+..++..+.|--+
T Consensus 134 ~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 134 EQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGIPG 185 (313)
T ss_pred HhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCCHH
Confidence 899898887 884 9999999999988888765532 22 2335566666665333
No 261
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.07 E-value=5.3e-10 Score=105.33 Aligned_cols=126 Identities=34% Similarity=0.475 Sum_probs=83.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCe---EEEEeCcccccc--------------ccCCchHHHHHHHHHHhcCCCeEE
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 578 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~---~i~v~~~~l~~~--------------~vg~se~~i~~~f~~a~~~~p~il 578 (807)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 458999999999999999999998764 777777654321 223446678899999998888999
Q ss_pred EEeccchhhhccCCCCCCCCchHHHHHHHH--HhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCC
Q 003620 579 FFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 579 fiDEid~l~~~r~~~~~~~~~~~~~v~~~l--L~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p 652 (807)
|+||++.+..... ....... ..............+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999865321 1111000 00001111234567888888733334444443 89988888655
No 262
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.06 E-value=4.1e-11 Score=114.05 Aligned_cols=109 Identities=29% Similarity=0.422 Sum_probs=70.7
Q ss_pred CceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccc------ccccc---CCchHHHHHHHHHHhcCCCeEEEEeccchhh
Q 003620 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWF---GESEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l------~~~~v---g~se~~i~~~f~~a~~~~p~ilfiDEid~l~ 587 (807)
+++|+||||||||++|+.+|..++.+++.+.++.. ...|. +..+-.-..+.+..+ .++++|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 37999999999999999999999999998887643 22222 111100001111111 4579999999984
Q ss_pred hccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCC------cEEEEecCCCCC----CCCccccCCCCc
Q 003620 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 643 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~------~vivi~aTn~~~----~ld~allrpgRf 643 (807)
...+++.|+..++.-. ... ++.+|+|+|..+ .+++|+++ ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 2455666655555421 011 389999999998 89999999 87
No 263
>PRK08727 hypothetical protein; Validated
Probab=99.06 E-value=3.9e-09 Score=109.59 Aligned_cols=146 Identities=25% Similarity=0.376 Sum_probs=95.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~ 319 (807)
..++|+||+|||||+|+++++..+ +....+++..++. ..+..+++.. ....+|+|||++.+..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999997764 4445566544432 2233344433 2346999999998764321
Q ss_pred CchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCcc--ceEEEeCCCChHHHHHHHHHHhc--CC
Q 003620 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NM 392 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf--~~~i~i~~P~~~~R~~il~~~~~--~~ 392 (807)
....++.+++....+..-+|+.+...|..+ ++.+++ || ...+.++.|+.+++.++++.++. ++
T Consensus 111 --------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 --------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred --------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 113455556555444333444445566655 688887 65 46789999999999999997553 44
Q ss_pred CCCCchhhhHHhhhcCCC
Q 003620 393 KLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 393 ~~~~~~~l~~la~~t~g~ 410 (807)
.+.+ ..+..++..+.|-
T Consensus 181 ~l~~-e~~~~La~~~~rd 197 (233)
T PRK08727 181 ALDE-AAIDWLLTHGERE 197 (233)
T ss_pred CCCH-HHHHHHHHhCCCC
Confidence 4433 3577888877653
No 264
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.06 E-value=6.8e-10 Score=122.49 Aligned_cols=124 Identities=26% Similarity=0.479 Sum_probs=80.4
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCC-------eEEEEe----Cccccccc----cCCc--hHHHHHHHHHHhcC--CC
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVK----GPELLTMW----FGES--EANVREIFDKARQS--AP 575 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~-------~~i~v~----~~~l~~~~----vg~s--e~~i~~~f~~a~~~--~p 575 (807)
.++++|+||||||||++|+.+|..+.. .++.+. ..+++..+ +|-. ......+.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 467999999999999999999988742 122222 12333222 1111 11234455666653 47
Q ss_pred eEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC--------------------CCCCCcEEEEecCCCCC----
Q 003620 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------------------MSAKKTVFIIGATNRPD---- 631 (807)
Q Consensus 576 ~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~--------------------~~~~~~vivi~aTn~~~---- 631 (807)
+++|||||+..- ..+++.++++.|+. +.-..++.||||+|..+
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998842 34455555554441 22346899999999988
Q ss_pred CCCccccCCCCcceeEEecC-CCH
Q 003620 632 IIDPALLRPGRLDQLIYIPL-PDE 654 (807)
Q Consensus 632 ~ld~allrpgRfd~~i~~~~-p~~ 654 (807)
.+|.|++| ||. .|.+.+ ++.
T Consensus 341 ~lD~AlrR--RF~-fi~i~p~~~~ 361 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEPGFDT 361 (459)
T ss_pred hccHHHHh--hhh-eEEecCCCCh
Confidence 79999999 996 455543 443
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=7.9e-09 Score=113.67 Aligned_cols=177 Identities=19% Similarity=0.154 Sum_probs=118.1
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE-------------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 543 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~------------- 543 (807)
+..+++|.|++.+++.|.+.+... +.+..+||+||+|+||+++|.++|..+-+.-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 457899999999999998877642 2345699999999999999999998762210
Q ss_pred EE-------------EeCcccccccc---CC--------chHHHHHHHHHH----hcCCCeEEEEeccchhhhccCCCCC
Q 003620 544 IS-------------VKGPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 544 i~-------------v~~~~l~~~~v---g~--------se~~i~~~f~~a----~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
+. -+-+|+.--.. +. .-..||.+-+.+ ....+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 00 00112110000 10 123456555543 34567899999999862
Q ss_pred CCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc
Q 003620 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD 675 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d 675 (807)
....+.||..++.. ..+.++|.+|+.++.+.|.+.+ |+. .+.|++|+.++..+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 35677888888853 3455677788888888888876 874 8899999999999988775422 11222
Q ss_pred HHHHHHHcCCCC
Q 003620 676 LRALAKYTQGFS 687 (807)
Q Consensus 676 l~~la~~t~g~s 687 (807)
+..++..+.|--
T Consensus 221 ~~~l~~~s~Gsp 232 (365)
T PRK07471 221 RAALAALAEGSV 232 (365)
T ss_pred HHHHHHHcCCCH
Confidence 356666666533
No 266
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=6.8e-09 Score=117.65 Aligned_cols=176 Identities=20% Similarity=0.292 Sum_probs=118.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
+++.+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3467789999999999999988877541 224569999999999999999999987532
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
++.+++... . .-..++.+.+.. ......|+||||+|.+.. ...+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHH
Confidence 233333211 0 112333332222 224567999999988742 2345
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 409 (807)
.|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++-...++..++.... .++..+..++..+.|
T Consensus 140 ~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777887643 356666677888889889887 55 46899999998888777765543332 233346677777655
No 267
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=5.9e-09 Score=120.66 Aligned_cols=185 Identities=19% Similarity=0.271 Sum_probs=123.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+-.|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456778999999999999998887541 124469999999999999999999987642
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 22222211 01123445554333 234456999999998732 234567
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..++.. ...+++|.+|+.+..+.+++++ |+. .+++..++.++..++++..+....+. ++..+..++..+.|-
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd- 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS- 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 7777653 3466777777878889888887 653 57899898888888887665433322 334567777777663
Q ss_pred HHHHHHHHH
Q 003620 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.+++..++.
T Consensus 214 lR~alslLd 222 (563)
T PRK06647 214 VRDAYTLFD 222 (563)
T ss_pred HHHHHHHHH
Confidence 444444443
No 268
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.04 E-value=6.2e-09 Score=113.59 Aligned_cols=176 Identities=23% Similarity=0.280 Sum_probs=114.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----eEEEEe
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~ 274 (807)
++..+.+|+++.|.+++++.++.++... ...+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 4566778999999999999998887531 1235899999999999999999998732 344454
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh------cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEE
Q 003620 275 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 348 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI 348 (807)
+.+-.+ ...++..+..... ..+.+++|||+|.+... ....|+..++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332111 1112222222211 22459999999877321 224566667665443 3444
Q ss_pred EecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 003620 349 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 349 ~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (807)
.+++.+..+.+.+++ |+. .++++.++..+...+++..++...+ .++..+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 466766777777776 553 5899999999988888877654333 2334577777776654
No 269
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=4.4e-09 Score=122.78 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=120.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.++.++.|+..+... ..+..+||+||+|+||||+++++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456789999999999999998887541 224568999999999999999999987642
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+...+.. ....|+||||+|.+.. ...+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 23333321 1122345666555432 2335999999998742 234678
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (807)
+..|+... .++++|.+|+.++.+.+.+++ |+ ..++|..++..+-...+...++...+ .++..+..++..+.|-
T Consensus 140 Lk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 140 LKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 88887643 367777788888999998887 55 45788888887777666655443322 2334567777777763
No 270
>PRK09087 hypothetical protein; Validated
Probab=99.04 E-value=2.1e-09 Score=110.69 Aligned_cols=135 Identities=20% Similarity=0.258 Sum_probs=89.8
Q ss_pred CceeeCCCCCChhHHHHHHHHHhCCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCC
Q 003620 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 596 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~ 596 (807)
.++|+||+|||||+|+++++...+..++.. .++.. .++..... .+|++||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCCC--------
Confidence 389999999999999999998876554332 22211 11122222 3788999998621
Q ss_pred CCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC---CccccCCCCcc--eeEEecCCCHHHHHHHHHHHhccCCCC
Q 003620 597 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVS 671 (807)
Q Consensus 597 ~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l---d~allrpgRfd--~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (807)
.. ..|...++.+...++.+||+++..|..+ .+.+.+ ||. .++.+.+|+.++|.+|++.+++...+.
T Consensus 102 ----~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 ----DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred ----CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 01 2234444433344566788777666533 577776 886 789999999999999999999776544
Q ss_pred cc-ccHHHHHHHcC
Q 003620 672 KD-VDLRALAKYTQ 684 (807)
Q Consensus 672 ~~-~dl~~la~~t~ 684 (807)
-+ .-++.|++...
T Consensus 173 l~~ev~~~La~~~~ 186 (226)
T PRK09087 173 VDPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHhh
Confidence 32 23677777665
No 271
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.03 E-value=1.6e-08 Score=118.83 Aligned_cols=180 Identities=27% Similarity=0.445 Sum_probs=111.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeE
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 270 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~ 270 (807)
.+.+-+|+++.|.+..++.+.+.+..+ .+.+++|+|||||||||+|+++.+.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 345668899999999988876665432 24579999999999999999998765 3468
Q ss_pred EEEechhhh-------hhhhchhHH----HHHHHHHH----------HHhcCCeEEEEccchhccCCCCCCchhHHHHHH
Q 003620 271 FCINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 271 i~v~~~~l~-------~~~~g~~~~----~l~~vf~~----------a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
+.++|..+. ..+.+.... ..+..+.. .......+|||||++.|-+. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 899886541 111111100 01111110 01123469999999876322 22
Q ss_pred HHHHHHhhcc--------------------------cCCceEEEEE-ecCCCCCCCHHhhccCccceEEEeCCCChHHHH
Q 003620 330 SQLLTLMDGL--------------------------KSRAHVIVIG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 382 (807)
Q Consensus 330 ~~Ll~~ld~~--------------------------~~~~~viVI~-atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~ 382 (807)
..|+..++.- .....+++++ +++.+..+++++++ ||. .+.+++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3344444321 0122455555 45668889999987 775 5788899999999
Q ss_pred HHHHHHhcCCCCC-CchhhhHHhhhc
Q 003620 383 EVLRIHTKNMKLS-DDVDLERIAKDT 407 (807)
Q Consensus 383 ~il~~~~~~~~~~-~~~~l~~la~~t 407 (807)
.|++..+...... .+.-++.++..+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 9998876654321 223344554443
No 272
>PRK05642 DNA replication initiation factor; Validated
Probab=99.03 E-value=8.1e-09 Score=107.20 Aligned_cols=146 Identities=18% Similarity=0.315 Sum_probs=100.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~ 318 (807)
...++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 3579999999999999999998764 5567788877765421 122222222 2589999999875432
Q ss_pred CCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCcc--ceEEEeCCCChHHHHHHHHHHhcC--
Q 003620 319 KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN-- 391 (807)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf--~~~i~i~~P~~~~R~~il~~~~~~-- 391 (807)
.....|+++++.+......++++++..|..+ .+.+++ || ...+.+..|+.+++.++++.....
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1224577777776666677888777766544 577887 66 466788999999999999854433
Q ss_pred CCCCCchhhhHHhhhcCC
Q 003620 392 MKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 392 ~~~~~~~~l~~la~~t~g 409 (807)
+.+. +.-++.++.+..+
T Consensus 184 ~~l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 184 LHLT-DEVGHFILTRGTR 200 (234)
T ss_pred CCCC-HHHHHHHHHhcCC
Confidence 3333 3346777776655
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=4e-09 Score=112.16 Aligned_cols=190 Identities=19% Similarity=0.297 Sum_probs=115.8
Q ss_pred ceeeCCCCCChhHHHHHHHHHhCC-eEEE--EeCc-----ccc---ccccCCc-----h-HHHHHHH----HHHhcCCCe
Q 003620 518 VLFYGPPGCGKTLLAKAIANECQA-NFIS--VKGP-----ELL---TMWFGES-----E-ANVREIF----DKARQSAPC 576 (807)
Q Consensus 518 iLl~GppGtGKT~lakalA~~~~~-~~i~--v~~~-----~l~---~~~vg~s-----e-~~i~~~f----~~a~~~~p~ 576 (807)
++|+||+|+||||+++.++..+.. .+.. +..+ +++ ....|.. . ...+.+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 789999999999999999998752 2221 1111 111 0011211 1 1122222 233456678
Q ss_pred EEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcE--EEEecCCCCCCCC-c---cccCCCCcceeEEec
Q 003620 577 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV--FIIGATNRPDIID-P---ALLRPGRLDQLIYIP 650 (807)
Q Consensus 577 ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v--ivi~aTn~~~~ld-~---allrpgRfd~~i~~~ 650 (807)
++++||++.+... ....+..+...... ....+ ++++.+...+.+. + .+.+ |+...++++
T Consensus 126 vliiDe~~~l~~~-----------~~~~l~~l~~~~~~--~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 126 LLVVDEAQNLTPE-----------LLEELRMLSNFQTD--NAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred EEEEECcccCCHH-----------HHHHHHHHhCcccC--CCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 9999999987321 22233333322111 12222 3333332222232 2 2334 888899999
Q ss_pred CCCHHHHHHHHHHHhccCCC-----CccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 003620 651 LPDEDSRHQIFKACLRKSPV-----SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMD 725 (807)
Q Consensus 651 ~p~~~~r~~Il~~~~~~~~~-----~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~ 725 (807)
+.+.++..+++...++..+. -.+..++.|++.+.|... .|..+|..|...|..+.
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~------------------- 250 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE------------------- 250 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC-------------------
Confidence 99999999999988865432 123457888999999865 59999999988887754
Q ss_pred ccccccccccccHHHHHHHHhhcC
Q 003620 726 EDAAEDEVSEIKAAHFEESMKFAR 749 (807)
Q Consensus 726 ~~~~~~~~~~i~~~~~~~a~~~~~ 749 (807)
...|+.++++.++..+.
T Consensus 251 -------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 -------KREIGGEEVREVIAEID 267 (269)
T ss_pred -------CCCCCHHHHHHHHHHhh
Confidence 23699999999987754
No 274
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=3.3e-10 Score=111.32 Aligned_cols=112 Identities=26% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCC----eEEEEeCccccccccCCchHHHHHHHHHHh----cCCCeEEEEeccchh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSI 586 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~----~~i~v~~~~l~~~~vg~se~~i~~~f~~a~----~~~p~ilfiDEid~l 586 (807)
...+||+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+...+. .....||||||||..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 345899999999999999999999986 9999999987651 111222222222110 111129999999999
Q ss_pred hhccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCCC
Q 003620 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD 631 (807)
Q Consensus 587 ~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~~ 631 (807)
.+..+ ...+-....+++.||+.||+-. +.+++++|+|+|--.
T Consensus 81 ~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 87521 1223345678999999888632 246899999999654
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.01 E-value=6e-09 Score=124.12 Aligned_cols=133 Identities=26% Similarity=0.321 Sum_probs=87.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh------hhhhhch----hHHHHHHHHHHHHhcCCeEEEEccc
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI------MSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEI 310 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l------~~~~~g~----~~~~l~~vf~~a~~~~p~Il~iDEi 310 (807)
....+||.||..||||+++..+|.+.+..|+.||..+- ++.|+.+ .+-+-+.+. .|.+.. -.|++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLV-eAlR~G-yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLV-EALRRG-YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHH-HHHhcC-cEEEeecc
Confidence 34569999999999999999999999999999997543 2333322 111222233 333332 48999998
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHhhcc------------cCCceEEEEEecCCCC------CCCHHhhccCccceEEE
Q 003620 311 DSIAPKREKTHGEVERRIVSQLLTLMDGL------------KSRAHVIVIGATNRPN------SIDPALRRFGRFDREID 372 (807)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~------------~~~~~viVI~atn~~~------~ld~al~r~~rf~~~i~ 372 (807)
.-. | ..+++.|..++|.- ..++.+.++||.|+|. .+..|+|. || .+++
T Consensus 965 NLA-p----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~h 1030 (4600)
T COG5271 965 NLA-P----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMH 1030 (4600)
T ss_pred ccC-c----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhh
Confidence 532 2 23667777777643 2345678888888874 45677776 77 4455
Q ss_pred eCCCChHHHHHHHHHHh
Q 003620 373 IGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 373 i~~P~~~~R~~il~~~~ 389 (807)
|..-.+.+...||...+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 55555666677776443
No 276
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.01 E-value=6.4e-09 Score=117.81 Aligned_cols=167 Identities=16% Similarity=0.247 Sum_probs=109.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHH---HHHHHHHHHHhcCCeEEEEccchhcc
Q 003620 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES---NLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~---~l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
.+++|||++|+|||+|++++++.+ +..++++++.++...+...... .+....+. -..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999865 3567889988877665543322 12111111 1346799999999885
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC---CCHHhhccCccc--eEEEeCCCChHHHHHHHHHHh
Q 003620 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~---ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~ 389 (807)
.+. .....|..+++.+......+|+.+...|.. +++.+++ ||. ..+.+..|+.++|.+|++..+
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 432 223456666666555555455554445543 4677777 664 667899999999999998876
Q ss_pred cCCC---CCCchhhhHHhhhcCCCcHHHHHHHHHHHH
Q 003620 390 KNMK---LSDDVDLERIAKDTHGYVGADLAALCTEAA 423 (807)
Q Consensus 390 ~~~~---~~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (807)
+... ..++..+..++....|- .+.+..++....
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 5432 23344577787777763 344444444443
No 277
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.2e-08 Score=110.04 Aligned_cols=199 Identities=23% Similarity=0.329 Sum_probs=125.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----EEEEechhhhhhh--
Q 003620 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIMSKL-- 282 (807)
Q Consensus 210 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-----~i~v~~~~l~~~~-- 282 (807)
+.+-+.+++++..++.-.++. ..|.+++++||||||||++++.++.++... +++|||....+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 778889999988776543322 345579999999999999999999987543 7999985542211
Q ss_pred -------------hchhH-HHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEE
Q 003620 283 -------------AGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 283 -------------~g~~~-~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viV 347 (807)
.|... +....+++.... ....|+++||+|.|..+.+ .++-.|+.+.... ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 11222 223333333333 3457899999999987643 2444455444444 567899
Q ss_pred EEecCCCC---CCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCC---CCCchhhhHHhh---hcCCCcHHHHHHH
Q 003620 348 IGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK---LSDDVDLERIAK---DTHGYVGADLAAL 418 (807)
Q Consensus 348 I~atn~~~---~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~---~~~~~~l~~la~---~t~g~~~~dl~~l 418 (807)
|+.+|..+ .+++.+.+.... .+|.|++.+.++-..|++...+..- ..++.-++.++. ..+| ..+-...+
T Consensus 160 i~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidi 237 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDI 237 (366)
T ss_pred EEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHH
Confidence 99999864 668888773333 4589999999999999987654321 112222443433 3333 22233345
Q ss_pred HHHHHHHHHHh
Q 003620 419 CTEAALQCIRE 429 (807)
Q Consensus 419 ~~~a~~~~~~~ 429 (807)
|+.|+..+-++
T Consensus 238 lr~A~eiAe~~ 248 (366)
T COG1474 238 LRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHhh
Confidence 66666554433
No 278
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=120.97 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 291 ~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
|.++..|..+.|.+|+.|| +....+..+..+++.++..+....++.+|..||++.-+
T Consensus 162 Rv~iAmALa~~P~LLIaDE----------PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv 218 (539)
T COG1123 162 RVMIAMALALKPKLLIADE----------PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218 (539)
T ss_pred HHHHHHHHhCCCCEEEECC----------CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH
Confidence 4455667778899999999 45555667778899999988888888899899987533
No 279
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.00 E-value=2.2e-09 Score=126.90 Aligned_cols=155 Identities=23% Similarity=0.336 Sum_probs=103.7
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh-------------------
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 539 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~------------------- 539 (807)
.|.+|.|++.++..|.-....| ...|+||.||+|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4678999999998876554432 11469999999999999999999987
Q ss_pred ----------------CCeEEEEeCccccccccCCc--hHHH--------HHHHHHHhcCCCeEEEEeccchhhhccCCC
Q 003620 540 ----------------QANFISVKGPELLTMWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 540 ----------------~~~~i~v~~~~l~~~~vg~s--e~~i--------~~~f~~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
..+|+.+.........+|.. ++.+ ..++..|.. .|||+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~---GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHR---GILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCC---CeEEeChhhhCC------
Confidence 24566554433222333321 1111 011122222 499999999974
Q ss_pred CCCCCchHHHHHHHHHhcccCCC-----------CCCcEEEEecCCCC-CCCCccccCCCCcceeEEecCCC-HHHHHHH
Q 003620 594 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPD-EDSRHQI 660 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vivi~aTn~~-~~ld~allrpgRfd~~i~~~~p~-~~~r~~I 660 (807)
..+++.||..|+.-. ...++++|+|+|.. ..+.++|+. ||+..|.++.+. .+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 346677777775321 12468899999964 357889998 999999998774 6888888
Q ss_pred HHHHh
Q 003620 661 FKACL 665 (807)
Q Consensus 661 l~~~~ 665 (807)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 280
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.8e-08 Score=117.14 Aligned_cols=193 Identities=19% Similarity=0.190 Sum_probs=126.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEe-----
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN----- 274 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~----- 274 (807)
.++.+-+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+++|+.+++.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3567779999999999999998877541 23557999999999999999999998865321111
Q ss_pred --------chhhhhhh----------hchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 275 --------GPEIMSKL----------AGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 275 --------~~~l~~~~----------~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
|..+.... ....-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 11111000 00123456777665543 2346999999998742 234667
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCc
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~ 411 (807)
+..|+.... .+.+|.+|+.++.+.+.+++ |+ ..+++..++..+-..+++..++..... ++..+..++..+.|.
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 777776433 45565667777778888877 55 568999999988888887665443322 234566777777664
Q ss_pred HHHHHHHHHH
Q 003620 412 GADLAALCTE 421 (807)
Q Consensus 412 ~~dl~~l~~~ 421 (807)
..++..++..
T Consensus 227 lr~al~~Ldk 236 (598)
T PRK09111 227 VRDGLSLLDQ 236 (598)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 281
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.98 E-value=1e-09 Score=116.94 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=94.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh--hhchhHHHH----------HHHHHHHHhcCCeEEEEc
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESNL----------RKAFEEAEKNAPSIIFID 308 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~--~~g~~~~~l----------~~vf~~a~~~~p~Il~iD 308 (807)
.+++|||.||||||||++++.+|..++.+++.+++...... +.|.....+ ...+-.|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 35689999999999999999999999999999988655433 333211100 11122232 346789999
Q ss_pred cchhccCCCCCCchhHHHHHHHHHHHHhhc------------ccCCceEEEEEecCCCC------------CCCHHhhcc
Q 003620 309 EIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRRF 364 (807)
Q Consensus 309 Eid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~viVI~atn~~~------------~ld~al~r~ 364 (807)
|++..-++ +...|..+++. +..++.+.||+|+|... .+++++..
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99976432 23344444441 22345688999999854 35778877
Q ss_pred CccceEEEeCCCChHHHHHHHHHHhc
Q 003620 365 GRFDREIDIGVPDEVGRLEVLRIHTK 390 (807)
Q Consensus 365 ~rf~~~i~i~~P~~~~R~~il~~~~~ 390 (807)
||...+.+..|+.+.-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999876543
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.98 E-value=2.1e-08 Score=119.66 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=85.6
Q ss_pred CCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc------cccc-----CCchHHHHHHHHHHhcCCCeEEEEe
Q 003620 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWF-----GESEANVREIFDKARQSAPCVLFFD 581 (807)
Q Consensus 513 ~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~------~~~v-----g~se~~i~~~f~~a~~~~p~ilfiD 581 (807)
+..+++||-|.||+|||+|..++|.+.|...++++.++-. +.++ |+..-.-.......|.. .-+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEee
Confidence 4457799999999999999999999999999999877542 2221 11111112222333333 368899
Q ss_pred ccchhhhccCCCCCCCCchHHHHHHHHHh-----------cccCC-CCCCcEEEEecCCCCC------CCCccccCCCCc
Q 003620 582 ELDSIATQRGSSVGDAGGAADRVLNQLLT-----------EMDGM-SAKKTVFIIGATNRPD------IIDPALLRPGRL 643 (807)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~v~~~lL~-----------~ld~~-~~~~~vivi~aTn~~~------~ld~allrpgRf 643 (807)
|+.-- +..|+.-|-. ++|.. .-..+..|+||-|.-+ -|...++. ||
T Consensus 1619 EiNLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 98652 2333333333 33321 1234677888888754 47778887 99
Q ss_pred ceeEEecCCCHHHHHHHHHHHh
Q 003620 644 DQLIYIPLPDEDSRHQIFKACL 665 (807)
Q Consensus 644 d~~i~~~~p~~~~r~~Il~~~~ 665 (807)
. ++++...+.+....|.+...
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-eEEecccccchHHHHHHhhC
Confidence 7 77777777777666666554
No 283
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.7e-08 Score=118.19 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=119.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+..|+++.|.+..++.|+.++... .-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 456778999999999999998887641 123469999999999999999999998652
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
++.++. ........++.++..+.. ....|+||||+|.|-. ...+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHH
Confidence 112211 112334567777766543 2346999999998731 2346
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcC--CCCCCchhhhHHhhhcC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTH 408 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~l~~la~~t~ 408 (807)
.|+..|+... ..+++|++|+++..+.+.+++ |+ ..+++..+...+-...+.....+ ..+. ...+..++..+.
T Consensus 140 aLLK~LEePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~ 213 (620)
T PRK14948 140 ALLKTLEEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHhcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcC
Confidence 6777787533 356677777888888888887 55 45788888777666655544433 2332 234667777776
Q ss_pred CCc
Q 003620 409 GYV 411 (807)
Q Consensus 409 g~~ 411 (807)
|-.
T Consensus 214 G~l 216 (620)
T PRK14948 214 GGL 216 (620)
T ss_pred CCH
Confidence 643
No 284
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.7e-08 Score=115.12 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=124.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 268 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------- 268 (807)
.++.+.+|+++.|.+..++.|+..+... ..+..+||+||+|+|||++|+++++.+.+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567789999999999999998887541 22445799999999999999999988742
Q ss_pred -------------eEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 269 -------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 269 -------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
.++.+++..- ..-..++.+.+.... ....|++|||+|.+.. ...+.
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NA 136 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNA 136 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHH
Confidence 1233332110 112445555544321 2235999999987732 24466
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g~ 410 (807)
|+..|+.... .+.+|.+|+++..+.+.+++ |. ..+++..++..+-...++..++.-.+ .++..+..++....|
T Consensus 137 LLK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G- 210 (535)
T PRK08451 137 LLKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG- 210 (535)
T ss_pred HHHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7888876533 45556666778899999988 64 57899999988877777655543222 133457777777766
Q ss_pred cHHHHHHHHHHHH
Q 003620 411 VGADLAALCTEAA 423 (807)
Q Consensus 411 ~~~dl~~l~~~a~ 423 (807)
..+++..++..+.
T Consensus 211 dlR~alnlLdqai 223 (535)
T PRK08451 211 SLRDTLTLLDQAI 223 (535)
T ss_pred cHHHHHHHHHHHH
Confidence 4455555554443
No 285
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2e-08 Score=117.06 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=116.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE--------
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------- 272 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-------- 272 (807)
++.+.+|++|.|.+..++.|+..+... .-+..+||+||+||||||+|+++|+.+.+.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 567789999999999999998876541 223469999999999999999999998762100
Q ss_pred --Ee---c---hhhhh-------hhhc---hhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 273 --IN---G---PEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 273 --v~---~---~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
-. | ..+.. .+.+ ..-..++.+.+.. ......|++|||+|.+.. ...+
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHH
Confidence 00 0 00000 0011 1124455554444 223346999999988742 1235
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 409 (807)
.|+..|+.... .+++|.+|+.+..+.+.+++ |. ..+++..++..+-...++..++.... .++..++.++..+.|
T Consensus 146 aLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 67777776433 44555556677888888877 44 56889999888877777655443222 233457777777766
Q ss_pred Cc
Q 003620 410 YV 411 (807)
Q Consensus 410 ~~ 411 (807)
..
T Consensus 221 dl 222 (620)
T PRK14954 221 SM 222 (620)
T ss_pred CH
Confidence 43
No 286
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=7.9e-09 Score=115.84 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=113.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
+++.+..|++|.|.+..++.|+.++... ..+..+||+||||+||||+|+++|+.+.+.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 3567788999999999999988877641 224469999999999999999999988652
Q ss_pred ----------------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchh
Q 003620 270 ----------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 270 ----------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~ 323 (807)
++.+++.. ......++.+.+.+. .....++||||+|.+..
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-------- 141 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-------- 141 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------
Confidence 11121110 011344555544442 22335999999998742
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhH
Q 003620 324 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLER 402 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~ 402 (807)
...+.|+..++... ...++|.+|+.+..+.+.+++ |. ..+++..++..+-...++..++.... .++..++.
T Consensus 142 ---~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 142 ---AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred ---HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12345666666433 244555556667778788776 44 35788888888777777665543222 23334667
Q ss_pred HhhhcCCC
Q 003620 403 IAKDTHGY 410 (807)
Q Consensus 403 la~~t~g~ 410 (807)
++..+.|.
T Consensus 214 l~~~s~g~ 221 (397)
T PRK14955 214 IGRKAQGS 221 (397)
T ss_pred HHHHcCCC
Confidence 77777653
No 287
>PHA02244 ATPase-like protein
Probab=98.96 E-value=1.9e-08 Score=108.35 Aligned_cols=123 Identities=26% Similarity=0.355 Sum_probs=79.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhc---h-hHHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---E-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g---~-~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
.+.+|+|+||||||||+||+++|..++.+++.+++..-.....| . ....-..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 35679999999999999999999999999999885311111111 0 000111222222 34579999999876432
Q ss_pred CCCCchhHHHHHHHHHHHHhh---------cccCCceEEEEEecCCC-----------CCCCHHhhccCccceEEEeCCC
Q 003620 317 REKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGVP 376 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~viVI~atn~~-----------~~ld~al~r~~rf~~~i~i~~P 376 (807)
+...|..+++ .+....++.+|+|+|.+ ..++++++. ||. .+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 2233444443 12234678899999973 467888887 884 6889998
Q ss_pred ChH
Q 003620 377 DEV 379 (807)
Q Consensus 377 ~~~ 379 (807)
...
T Consensus 262 ~~~ 264 (383)
T PHA02244 262 EKI 264 (383)
T ss_pred cHH
Confidence 743
No 288
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.7e-08 Score=107.82 Aligned_cols=99 Identities=28% Similarity=0.487 Sum_probs=75.1
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-ccccCCc-hHHHHHHHHHHh----cCCCeEEEEeccchhhhc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-~~~vg~s-e~~i~~~f~~a~----~~~p~ilfiDEid~l~~~ 589 (807)
.++||.||+|+|||.||+.||..++.||...++..|. ..|||+. |.-+..+.+.|. +....|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4599999999999999999999999999999998875 5799987 445667776653 223459999999999843
Q ss_pred cCCCCCCCCchHHHHHHHHHhcccC
Q 003620 590 RGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
-..-....+-...-|...||..++|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3221111122356788899999887
No 289
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=3.4e-09 Score=99.81 Aligned_cols=128 Identities=38% Similarity=0.516 Sum_probs=80.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEEechhhhhh--------------hhchhHHHHHHHHHHHHhcCCeE
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 304 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~I 304 (807)
+..++|+|||||||||+++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998775 777776543221 11234556778888888887899
Q ss_pred EEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC-CCCCCHHhhccCccceEEEeCCC
Q 003620 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 376 (807)
Q Consensus 305 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~-~~~ld~al~r~~rf~~~i~i~~P 376 (807)
+++||++.+........ ....................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEAL-----LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHH-----HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998864421100 000000001111222345677778885 3344455554 77777766543
No 290
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=3.9e-09 Score=113.86 Aligned_cols=183 Identities=18% Similarity=0.265 Sum_probs=123.1
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe----------EEEEeC
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~----------~i~v~~ 548 (807)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999887532 234579999999999999999999875221 112223
Q ss_pred ccccccc-----cCC--------------------chHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCc
Q 003620 549 PELLTMW-----FGE--------------------SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGG 599 (807)
Q Consensus 549 ~~l~~~~-----vg~--------------------se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~ 599 (807)
||+.--+ -|. .-..+|.+-+.+.. ....|++||++|.+.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 3332000 011 11246666555443 446899999998873
Q ss_pred hHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCccccHHHH
Q 003620 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 679 (807)
Q Consensus 600 ~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~l 679 (807)
....|.||..|+..+ +. ++|..|+.++.|-|.+.+ |+ ..+.|++++.++..++++........ +.++..+
T Consensus 138 --~~aaNaLLK~LEEPp--~~-~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--NG-TLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--CC-eEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 345788899988754 33 455566788999999987 87 58999999999999999876432221 1234677
Q ss_pred HHHcCCCCHHhHHHHHH
Q 003620 680 AKYTQGFSGADITEICQ 696 (807)
Q Consensus 680 a~~t~g~sgadi~~l~~ 696 (807)
+..+.|--+ ...++++
T Consensus 208 ~~~a~Gs~~-~al~~l~ 223 (314)
T PRK07399 208 LALAQGSPG-AAIANIE 223 (314)
T ss_pred HHHcCCCHH-HHHHHHH
Confidence 777766333 4333443
No 291
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=1.3e-08 Score=121.17 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=112.4
Q ss_pred ceeeC--CCCCChhHHHHHHHHHh-----CCeEEEEeCccccccccCCchHHHHHHHHHHhcC------CCeEEEEeccc
Q 003620 518 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 584 (807)
Q Consensus 518 iLl~G--ppGtGKT~lakalA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~------~p~ilfiDEid 584 (807)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46678 99999999999999997 56899999998432 34566666554322 23699999999
Q ss_pred hhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHH
Q 003620 585 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 585 ~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~ 664 (807)
.+.. ...+.|+..|+.. ..++.+|.+||.++.|-+++.+ |+ ..+.|++|+.++....++..
T Consensus 641 ~Lt~--------------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9832 3567788888853 3567788889999999999887 87 58899999999998888887
Q ss_pred hccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHH
Q 003620 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 665 ~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~ 697 (807)
+.+.++. .+..+..++..++| |++.+++.
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G----DlR~AIn~ 731 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG----DMRRAINI 731 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 7655443 34457888887776 54444433
No 292
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=6.4e-09 Score=121.30 Aligned_cols=167 Identities=21% Similarity=0.326 Sum_probs=120.1
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----------CCeEEEE
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----------~~~~i~v 546 (807)
.-..+.++|-++-.+++.+.+.. +...+-+|+|+||+|||.++.-+|... +...+++
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34566677766665555555443 223457899999999999999999875 3456677
Q ss_pred eCcccc--ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 547 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 547 ~~~~l~--~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
+...+. .+|-|+.|..++.+.+...+..+.||||||||.+.+..+...+ ......++.-. | .+..+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPa---L----ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPA---L----ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHH---H----hcCCeEEE
Confidence 666665 5899999999999999999998999999999999986543211 11112222222 2 24556778
Q ss_pred ecCCCC-----CCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC
Q 003620 625 GATNRP-----DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 668 (807)
Q Consensus 625 ~aTn~~-----~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~ 668 (807)
|||..- =.-|+||-| ||. .|++..|+.++-..||+-.-.++
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 888542 234899999 996 89999999999999998665544
No 293
>PRK06620 hypothetical protein; Validated
Probab=98.93 E-value=1.8e-08 Score=102.88 Aligned_cols=132 Identities=16% Similarity=0.271 Sum_probs=89.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCch
Q 003620 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~ 322 (807)
..++||||||||||+|++++++..+..++. .... ....+ ....+++|||+|.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999987754322 1110 00111 233689999999441
Q ss_pred hHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC--CCHHhhccCccc--eEEEeCCCChHHHHHHHHHHhcC--CCCCC
Q 003620 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN--MKLSD 396 (807)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~--ld~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~~--~~~~~ 396 (807)
. ..|..+++.+...+..++++++..|.. + +.+++ |+. ..+.+..|+.+.+..+++..... +.+.+
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0 245666666666667788877776654 4 77887 664 46899999999999999876543 34443
Q ss_pred chhhhHHhhhcCCC
Q 003620 397 DVDLERIAKDTHGY 410 (807)
Q Consensus 397 ~~~l~~la~~t~g~ 410 (807)
..++.++....+-
T Consensus 170 -ev~~~L~~~~~~d 182 (214)
T PRK06620 170 -QIIDFLLVNLPRE 182 (214)
T ss_pred -HHHHHHHHHccCC
Confidence 3477777777553
No 294
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.7e-08 Score=115.62 Aligned_cols=185 Identities=19% Similarity=0.258 Sum_probs=118.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE---------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 270 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------- 270 (807)
+++.+.+|+++.|.+..++.|+..+... ..+..+||+||+|+||||+++++|+.+++..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 4567789999999999999988776541 1244689999999999999999999876421
Q ss_pred ----------------EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 271 ----------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 271 ----------------i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
+.+++.. ...-..++.+.+.+.. ....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 1222110 1112334554443322 2346999999997742 2345
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~~~l~~la~~t~g 409 (807)
.|+..++... ..+++|.+++.++.+.+.+++ |+ ..+++..++..+...+++.......+ .++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 345566666777778788876 54 45788888888888777766544332 223346677777665
Q ss_pred CcHHHHHHHH
Q 003620 410 YVGADLAALC 419 (807)
Q Consensus 410 ~~~~dl~~l~ 419 (807)
+..++...+
T Consensus 214 -dlr~al~~L 222 (585)
T PRK14950 214 -SMRDAENLL 222 (585)
T ss_pred -CHHHHHHHH
Confidence 333333333
No 295
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=8.2e-09 Score=112.00 Aligned_cols=147 Identities=19% Similarity=0.293 Sum_probs=101.6
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCC------------------------eEEEEeCccccccccCCchHHHHHHHHH
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~~f~~ 569 (807)
.+..+||+||+|+|||++|+++|..+.+ .++.+...+- ++ .-+-..+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHH
Confidence 3456999999999999999999998643 1222221100 00 0123456666655
Q ss_pred Hh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcce
Q 003620 570 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~ 645 (807)
+. .....|++|||+|.+. ....|.||..|+. +..++++|.+|+.++.|.|.+.+ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 54 3456799999999973 4567889999987 34577888899999999999987 886
Q ss_pred eEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCC
Q 003620 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g 685 (807)
.+.|++|+.++..+.++..... ..+.+...++..+.|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 5999999999888888765421 122334455666655
No 296
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.89 E-value=8.8e-09 Score=114.70 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCC--eEEEEeCcc-ccccccCCc-hHHH--HHHHHHHhcC---CCeEEEEeccch
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPE-LLTMWFGES-EANV--REIFDKARQS---APCVLFFDELDS 585 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~-l~~~~vg~s-e~~i--~~~f~~a~~~---~p~ilfiDEid~ 585 (807)
..++||+||||||||++|++++..++. +|..+...- ..+..+|.. -... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 456999999999999999999997643 333322210 111222321 0110 1123222211 234999999975
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHhcccCCC--------CCCcEEEEecCCCC-C--CCCccccCCCCcceeEEecCCC-
Q 003620 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRP-D--IIDPALLRPGRLDQLIYIPLPD- 653 (807)
Q Consensus 586 l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~vivi~aTn~~-~--~ld~allrpgRfd~~i~~~~p~- 653 (807)
+ ...+.+.||..|..-. .....++++|||.. + ...+|++- ||-..+.+|+|+
T Consensus 119 a--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 119 A--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred C--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 3 4567888888884311 11234555555643 2 23458888 999999999997
Q ss_pred HHHHHHHHHHH
Q 003620 654 EDSRHQIFKAC 664 (807)
Q Consensus 654 ~~~r~~Il~~~ 664 (807)
.++..+|+...
T Consensus 183 ~~~e~~lL~~~ 193 (498)
T PRK13531 183 KANFRSMLTSQ 193 (498)
T ss_pred hHHHHHHHHcc
Confidence 56668888764
No 297
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.89 E-value=1.3e-08 Score=119.32 Aligned_cols=55 Identities=29% Similarity=0.501 Sum_probs=45.9
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~ 542 (807)
+.+|..-|+++.|.+++++.+...+.. .++++|+||||||||+++++++..++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 456777899999999999988876652 2479999999999999999999998644
No 298
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=6.4e-10 Score=110.55 Aligned_cols=143 Identities=28% Similarity=0.411 Sum_probs=66.4
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC----------eEEEEeC
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------NFISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~----------~~i~v~~ 548 (807)
.|.+|.|++.+|+.|.-.... ..++||+||||||||++|+.+...+.. ...++.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 368999999999998765442 257999999999999999999987521 0000111
Q ss_pred ----------ccccccccCCchHHH--------HHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHh
Q 003620 549 ----------PELLTMWFGESEANV--------REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (807)
Q Consensus 549 ----------~~l~~~~vg~se~~i--------~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~ 610 (807)
.-+...--..++..+ --.+..|-. .|||+||+-.+ .+.+++.|++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~ 128 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQ 128 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHH
Confidence 000000000011100 011223333 49999998664 4678888888
Q ss_pred cccCCC-----------CCCcEEEEecCCCC-----------------------CCCCccccCCCCcceeEEecCCCHH
Q 003620 611 EMDGMS-----------AKKTVFIIGATNRP-----------------------DIIDPALLRPGRLDQLIYIPLPDED 655 (807)
Q Consensus 611 ~ld~~~-----------~~~~vivi~aTn~~-----------------------~~ld~allrpgRfd~~i~~~~p~~~ 655 (807)
-|+.-. -.-++++|+|+|.= ..|...++. |||..+.++..+.+
T Consensus 129 ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 129 PLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 886431 12367889998841 124445665 88888877766554
No 299
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.89 E-value=8e-09 Score=112.94 Aligned_cols=125 Identities=29% Similarity=0.412 Sum_probs=90.6
Q ss_pred CceeeCCCCCChhHHHHHHHHHhC------------------------CeEEEEeCccccccccCCchHHHHHHHHHHhc
Q 003620 517 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 572 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~~------------------------~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~ 572 (807)
.+||+||||+|||++|.++|+++. ..++.++.++.... +-....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHhcc
Confidence 599999999999999999999876 47788888775432 1134445555544433
Q ss_pred ----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEE
Q 003620 573 ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 573 ----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~ 648 (807)
....|+++||+|.+.. ...+.++..|+. +..+..+|.+||.++.|-+.+.+ |+. .+.
T Consensus 104 ~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 3468999999999843 456777777775 45577888888999988887766 774 778
Q ss_pred ecCCCHHHHHHHHH
Q 003620 649 IPLPDEDSRHQIFK 662 (807)
Q Consensus 649 ~~~p~~~~r~~Il~ 662 (807)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 87776655555544
No 300
>PRK09087 hypothetical protein; Validated
Probab=98.88 E-value=2.4e-08 Score=102.85 Aligned_cols=140 Identities=23% Similarity=0.299 Sum_probs=92.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCc
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~ 321 (807)
...++|+||+|||||+|+++++...+..+ ++..++... ++..... .+|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-----
Confidence 34599999999999999999998876553 333222111 1111111 47999999976211
Q ss_pred hhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCC-CCc
Q 003620 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDD 397 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~-~~~ 397 (807)
...|+++++.+......+|++++..|..+ .+.+++.......+++..|+.+.|.++++..+....+ .++
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13466777766666667777777666533 5778772233478899999999999999987654332 233
Q ss_pred hhhhHHhhhcCC
Q 003620 398 VDLERIAKDTHG 409 (807)
Q Consensus 398 ~~l~~la~~t~g 409 (807)
..++.++.+..+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 347777777764
No 301
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.87 E-value=7e-09 Score=112.23 Aligned_cols=159 Identities=25% Similarity=0.414 Sum_probs=98.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCC-ceEEEEcCCCCCHHHHHHHHHHHhCC-------e--EEE
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGA-------F--FFC 272 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLar~la~~l~~-------~--~i~ 272 (807)
.+..|++|.|.++.++.+.-.... ++ .++||.|+|||||||+++++++.++. + +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 356789999999998877532211 22 47999999999999999999999842 1 111
Q ss_pred Eec-hhh--------hh---------------hhhch--hHHHH---HHHHHHH--HhcCCeEEEEccchhccCCCCCCc
Q 003620 273 ING-PEI--------MS---------------KLAGE--SESNL---RKAFEEA--EKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 273 v~~-~~l--------~~---------------~~~g~--~~~~l---~~vf~~a--~~~~p~Il~iDEid~l~~~~~~~~ 321 (807)
+.+ .+. .. ...|. ....+ +..|+.- ......+||+||++.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~------- 141 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE------- 141 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC-------
Confidence 110 000 00 01110 00000 0011110 01112589999998764
Q ss_pred hhHHHHHHHHHHHHhhccc-----------CCceEEEEEecCCCC-CCCHHhhccCccceEEEeCCCCh-HHHHHHHHHH
Q 003620 322 GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 388 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~al~r~~rf~~~i~i~~P~~-~~R~~il~~~ 388 (807)
..+.+.|+..|+.-. ...++++++++|..+ .+++++.. ||...+.++.|.. ++|.++++..
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 235566777775321 234688888888654 57888887 9999999998877 8889998764
No 302
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.5e-08 Score=114.12 Aligned_cols=194 Identities=23% Similarity=0.303 Sum_probs=127.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE--------EE
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FC 272 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------i~ 272 (807)
+.++-.|+++.|.+...+.|+..+..-- -...+||.||.||||||+||.+|+.+++.- ..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4567789999999999999998887521 133689999999999999999999987542 11
Q ss_pred Eechhhhh----------hhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc
Q 003620 273 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
..|..+.. ......-..+|.+.+.+. ....-|.+|||+|.|.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 11111211 111123345666666543 34557999999998742 234555555554
Q ss_pred ccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCCCcHHHHHH
Q 003620 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 339 ~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g~~~~dl~~ 417 (807)
...+|.+|.+|..++.+++.+.+ |. ..+.+...+.++-...|...+.+-.+. ++..+..+++..+|- .+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs-~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGS-LRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCC-hhhHHH
Confidence 23578999999999999999877 44 335666677776666666555444433 334567777777763 466666
Q ss_pred HHHHHH
Q 003620 418 LCTEAA 423 (807)
Q Consensus 418 l~~~a~ 423 (807)
+...+.
T Consensus 220 lLDq~i 225 (515)
T COG2812 220 LLDQAI 225 (515)
T ss_pred HHHHHH
Confidence 666554
No 303
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.86 E-value=7.8e-08 Score=105.41 Aligned_cols=154 Identities=24% Similarity=0.428 Sum_probs=108.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
...++||||.|+|||+|++++++.. +..++.+...+++..+.......--.-|++-. .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999876 34578888777766655443333333444444 4469999999999766
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC---CHHhhccCccc--eEEEeCCCChHHHHHHHHHHhc-
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK- 390 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l---d~al~r~~rf~--~~i~i~~P~~~~R~~il~~~~~- 390 (807)
.. ....+.+.++.+...++-+|+.+-..|..+ .+.|++ ||. ..+.+.+|+.+.|..||+....
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 32 235677777777776666666666667655 578887 554 6779999999999999987543
Q ss_pred -CCCCCCchhhhHHhhhcCC
Q 003620 391 -NMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 391 -~~~~~~~~~l~~la~~t~g 409 (807)
++.++++ -+..++.....
T Consensus 260 ~~~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 260 RGIEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred cCCCCCHH-HHHHHHHHhhc
Confidence 4444444 35666665543
No 304
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=6.9e-10 Score=101.20 Aligned_cols=104 Identities=29% Similarity=0.411 Sum_probs=59.6
Q ss_pred CceeeCCCCCChhHHHHHHHHHhCCeEEEEeCc-ccc-----cccc-CCch----HHHHHHHHHHhcCCCeEEEEeccch
Q 003620 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-----TMWF-GESE----ANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~~~~~i~v~~~-~l~-----~~~v-g~se----~~i~~~f~~a~~~~p~ilfiDEid~ 585 (807)
++||.|+||+|||++|+++|..++..|..|.+. +++ +-.+ .... -.-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999988763 442 1111 1100 0112233 14999999987
Q ss_pred hhhccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCCC-----CCCccccCCCCc
Q 003620 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD-----IIDPALLRPGRL 643 (807)
Q Consensus 586 l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~~-----~ld~allrpgRf 643 (807)
. ..++.+.||..|..-. -.+.++||||-|+.+ .|..|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4 4567788887776421 135689999999876 46778776 77
No 305
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.85 E-value=7.4e-08 Score=106.10 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.8
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (807)
+.+.+++.+.|+||+||||||++++|++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 45677899999999999999999999865
No 306
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.85 E-value=3.1e-08 Score=105.55 Aligned_cols=65 Identities=35% Similarity=0.540 Sum_probs=46.2
Q ss_pred cccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC--CeEEEEeCcccc
Q 003620 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 552 (807)
Q Consensus 480 ~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~ 552 (807)
.+.++|+.++++..--.+..-.. +.-..+++||.||||||||.||-++|.+++ .||+.+++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~--------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE--------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT--------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHHhc--------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 45788999998877544432111 223457899999999999999999999996 799999999885
No 307
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.83 E-value=7.1e-09 Score=98.63 Aligned_cols=109 Identities=28% Similarity=0.464 Sum_probs=69.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh--hhhchhHHH-------HHHHHHHHHhcCCeEEEEccchhcc
Q 003620 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~--~~~g~~~~~-------l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
+|+|+||||||||+|++.+|..++.+++.++++.... ...|..... -..+.+.. ..+++++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 5899999999999999999999999998888765321 111110000 00000011 156899999998542
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhccc-----------CCc------eEEEEEecCCCC----CCCHHhhccCcc
Q 003620 315 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 367 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~viVI~atn~~~----~ld~al~r~~rf 367 (807)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 235556666665311 111 389999999988 88999988 66
No 308
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.4e-08 Score=110.90 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=103.9
Q ss_pred ccccccc-hhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeE--------------
Q 003620 479 SWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------- 543 (807)
Q Consensus 479 ~~~~i~g-~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~-------------- 543 (807)
.|+.|.| ++.+.+.|...+... +.+..+||+||+|+|||++|+++|..+-+.-
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778777 888999998876421 2345689999999999999999998863210
Q ss_pred --EEEeCcccccc-ccCC--chHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC
Q 003620 544 --ISVKGPELLTM-WFGE--SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 544 --i~v~~~~l~~~-~vg~--se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
..-+-+|+.-- ..|. +-..++.+.+.+. .....|++|||+|.+. ....|.||..|+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEE 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEE 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcC
Confidence 00001111100 0011 1245666655443 2345799999998863 4467889999986
Q ss_pred CCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHH
Q 003620 615 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKA 663 (807)
Q Consensus 615 ~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~ 663 (807)
. ...+++|.+|+.++.|-|++.+ |+. .++|++|+.++..++++.
T Consensus 137 P--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 P--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred C--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 3 3455666677778888899877 874 889999999888777754
No 309
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.82 E-value=2.1e-08 Score=116.57 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.8
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999998764
No 310
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.82 E-value=3.4e-08 Score=108.19 Aligned_cols=128 Identities=30% Similarity=0.436 Sum_probs=87.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh--hhhchhHHHHH------------HHHHHHHhcCCeEEE
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNLR------------KAFEEAEKNAPSIIF 306 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~--~~~g~~~~~l~------------~vf~~a~~~~p~Il~ 306 (807)
.+.++||.||||||||+|++.+|..++.+|+.++|..-+. ...|...-... -+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3678999999999999999999999999999999864332 12221111110 0111111 4999
Q ss_pred EccchhccCCCCCCchhHHHHHHHHHHHHhhc----------ccCCceEEEEEecCC-----CCCCCHHhhccCccceEE
Q 003620 307 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREI 371 (807)
Q Consensus 307 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~viVI~atn~-----~~~ld~al~r~~rf~~~i 371 (807)
+|||+...+ .+.+.|+..|+. +.-...++|++|+|. -..+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999986542 355667777765 334467888888883 3467889988 898889
Q ss_pred EeCCCChH-HHHHHH
Q 003620 372 DIGVPDEV-GRLEVL 385 (807)
Q Consensus 372 ~i~~P~~~-~R~~il 385 (807)
.++.|+.+ +...++
T Consensus 185 ~v~yp~~~~e~~~i~ 199 (329)
T COG0714 185 YVDYPDSEEEERIIL 199 (329)
T ss_pred ecCCCCchHHHHHHH
Confidence 99999544 444443
No 311
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.8e-07 Score=102.39 Aligned_cols=182 Identities=18% Similarity=0.192 Sum_probs=115.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------EEEE--
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 273 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v-- 273 (807)
.+..++++.|+++.++.+...+... .-+..+||+||+|+||||+|+.+|..+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4557788999999999998877642 123469999999999999999999987541 1000
Q ss_pred --ech---hh--------h---hh--h------hchhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHH
Q 003620 274 --NGP---EI--------M---SK--L------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (807)
Q Consensus 274 --~~~---~l--------~---~~--~------~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~ 325 (807)
.|. .+ . .. . ..-.-..++.+.+.. ......|++|||+|.+-.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 111 00 0 00 0 000123344443322 233456999999998742
Q ss_pred HHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhh
Q 003620 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 405 (807)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~ 405 (807)
...+.|+..++.... +.++|..|+.++.+.|.+++ |+ ..+.+++|+.++-.++|........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 234568888876443 44555557888888899987 66 5899999999999988876432222 12233556666
Q ss_pred hcCCCcHH
Q 003620 406 DTHGYVGA 413 (807)
Q Consensus 406 ~t~g~~~~ 413 (807)
.+.|-...
T Consensus 229 ~s~G~pr~ 236 (351)
T PRK09112 229 RSKGSVRK 236 (351)
T ss_pred HcCCCHHH
Confidence 66665443
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.81 E-value=1.4e-08 Score=120.84 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|+||+|||||||+++|++..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467888999999999999999999999875
No 313
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=6.2e-08 Score=107.18 Aligned_cols=121 Identities=29% Similarity=0.470 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe-------EEEEec----hhhhhhhh----ch--hHHHHHHHHHHHHh--cCC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF-------FFCING----PEIMSKLA----GE--SESNLRKAFEEAEK--NAP 302 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v~~----~~l~~~~~----g~--~~~~l~~vf~~a~~--~~p 302 (807)
+++++|+||||||||++|+.+|..+... .+.+.. .+++..+. |- ....+..+++.|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5689999999999999999999887531 122221 12222111 10 01123344455554 357
Q ss_pred eEEEEccchhccCCCCCCchhHHHHHHHHHHHHhh--------------------cccCCceEEEEEecCCCC----CCC
Q 003620 303 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD--------------------GLKSRAHVIVIGATNRPN----SID 358 (807)
Q Consensus 303 ~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld--------------------~~~~~~~viVI~atn~~~----~ld 358 (807)
.++||||++..-..+ +...++.+|+ .+.-..++.||||+|..+ .+|
T Consensus 274 ~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 999999997653221 1222233222 233346899999999887 789
Q ss_pred HHhhccCccceEEEeCC
Q 003620 359 PALRRFGRFDREIDIGV 375 (807)
Q Consensus 359 ~al~r~~rf~~~i~i~~ 375 (807)
.|++| ||.. +++.+
T Consensus 344 ~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 344 YALRR--RFSF-IDIEP 357 (459)
T ss_pred HHHHh--hhhe-EEecC
Confidence 99999 7844 45543
No 314
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.79 E-value=2.9e-08 Score=114.72 Aligned_cols=163 Identities=19% Similarity=0.230 Sum_probs=96.4
Q ss_pred ccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC-eEEEEeCc---cccc-----
Q 003620 483 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGP---ELLT----- 553 (807)
Q Consensus 483 i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~-~~i~v~~~---~l~~----- 553 (807)
|.|.+.+|..+.-.+...... ..-....+....++||+|+||||||++|++++..+.. .|+...++ .+..
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 567888877775444321111 0111112223346999999999999999999998753 33332111 1211
Q ss_pred cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCCcEE
Q 003620 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 622 (807)
Q Consensus 554 ~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vi 622 (807)
...|+..-. ...+..|.. .++++||++.+.. .....|+..|+.-. -..++.
T Consensus 284 ~~~g~~~~~-~G~l~~A~~---Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLE-GGALVLADN---GVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEec-CccEEecCC---CEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 111110000 001122322 4999999999743 33444555454311 124678
Q ss_pred EEecCCCCC-------------CCCccccCCCCcceeEEe-cCCCHHHHHHHHHHHhc
Q 003620 623 IIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEDSRHQIFKACLR 666 (807)
Q Consensus 623 vi~aTn~~~-------------~ld~allrpgRfd~~i~~-~~p~~~~r~~Il~~~~~ 666 (807)
||||+|..+ .|++++++ |||.++.+ ..|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999752 58899998 99986665 68999999999988654
No 315
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.79 E-value=2.2e-08 Score=98.47 Aligned_cols=113 Identities=26% Similarity=0.355 Sum_probs=73.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC----eEEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCeEEEEccchh
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDS 312 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~----~~i~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~Il~iDEid~ 312 (807)
|-..+||+||+|||||.+|+++|..+.. +++.++++++.... +....+...+.. .......|||+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999995 89999998876511 111111111111 1111123999999999
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhccc---------CCceEEEEEecCCCC
Q 003620 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN 355 (807)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn~~~ 355 (807)
+.+..+...+.....+...|+.++++-. .-.++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9886333333344567788888886422 124678888887643
No 316
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=2e-07 Score=109.28 Aligned_cols=176 Identities=20% Similarity=0.289 Sum_probs=118.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++.+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|..+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3567789999999999999998887641 124459999999999999999999987531
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHH
Q 003620 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
++.+++.. ......++.++..+.. ...-|++|||+|.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 22333211 1113456666655432 2235999999988732 2346
Q ss_pred HHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhHHhhhcCC
Q 003620 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~la~~t~g 409 (807)
.|+..|+.... ..++|.+|+.+..+-+.+++ |. ..+++..++..+-...++..+....+. +...+..++..+.|
T Consensus 140 aLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 68888876533 45555666677888888887 55 458899898888777776654443332 23346777777755
No 317
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.78 E-value=2e-07 Score=92.87 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=115.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 003620 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (807)
..+.+.+.+|.|++.+++.|.+--.. |- .=.|..+|||+|..|||||+|++++-++. +..++.|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~-------F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQ-------FA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHH-------HH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34567889999999999988543322 11 11456789999999999999999998876 45678888777
Q ss_pred hhhhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcc-cC-CceEEEEEecCCC
Q 003620 278 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVIGATNRP 354 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a~~-~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~-~~~viVI~atn~~ 354 (807)
+.. +-.+++..+. ...-|||+|++.+= .++ .....|-..|++- .. ..+|++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe-------~gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFE-------EGD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCC-------CCc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 2333443332 34579999997531 111 1224455666653 22 3578999999987
Q ss_pred CCCCHHh--------------------hccCccceEEEeCCCChHHHHHHHHHHhcCCCCCC
Q 003620 355 NSIDPAL--------------------RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 396 (807)
Q Consensus 355 ~~ld~al--------------------~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~ 396 (807)
..++..+ .-..||..-+.|.+++.++-+.|+..+.+...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 6554211 12358888899999999999999998887766653
No 318
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.78 E-value=5e-08 Score=105.18 Aligned_cols=162 Identities=21% Similarity=0.251 Sum_probs=105.3
Q ss_pred cccchhhHHHhhHhhhcCCCCchhhhhhcccC-CCCCceeeCCCCCChhHHHHHHHHHhCC-------eEEEEeC----c
Q 003620 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 549 (807)
Q Consensus 482 ~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~-~~~giLl~GppGtGKT~lakalA~~~~~-------~~i~v~~----~ 549 (807)
++.|+++++.++.+.+..... |.. ..+.++|+|||||||||+|++|+..++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 799999998888876653221 222 2356899999999999999999999865 8888877 4
Q ss_pred cccccccCCchHHHHHHHHHHhcC--------------------------------------------------------
Q 003620 550 ELLTMWFGESEANVREIFDKARQS-------------------------------------------------------- 573 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~~f~~a~~~-------------------------------------------------------- 573 (807)
.+....++-.....|..|.....-
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 443322222222233222221100
Q ss_pred --------------------------------CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC----C
Q 003620 574 --------------------------------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----A 617 (807)
Q Consensus 574 --------------------------------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----~ 617 (807)
...|+-|+|+.. ...++++.||+.++... +
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K--------------~~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFK--------------ADIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhc--------------CCHHHHHHHhhhhhcceEecCC
Confidence 012333333333 23567888888877421 1
Q ss_pred -----CCcEEEEecCCCCC-------CCCccccCCCCcceeEEecCC-CHHHHHHHHHHHhccC
Q 003620 618 -----KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEDSRHQIFKACLRKS 668 (807)
Q Consensus 618 -----~~~vivi~aTn~~~-------~ld~allrpgRfd~~i~~~~p-~~~~r~~Il~~~~~~~ 668 (807)
.-..+||+++|..+ ....|+++ ||. .+++|.| +..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 12468899999873 55789998 998 9999987 5678888998888653
No 319
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.77 E-value=3e-08 Score=107.49 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=99.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eEEE-Ee
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN 274 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~-v~ 274 (807)
...+|++|+|+++.+..|.-....| ...+|||.|++||||||++|+++..+.. +|.. -+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3458999999999888875544332 1247999999999999999999887642 1210 00
Q ss_pred chh-----hhhhh-------------------hchhHHH------HHHHHHHHH---------hcCCeEEEEccchhccC
Q 003620 275 GPE-----IMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 275 ~~~-----l~~~~-------------------~g~~~~~------l~~vf~~a~---------~~~p~Il~iDEid~l~~ 315 (807)
.++ ..... .+.++.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000 00000 0111111 111122111 11236999999988753
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcc-----------cCCceEEEEEecCCCC-CCCHHhhccCccceEEEeCCCC-hHHHH
Q 003620 316 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 382 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~viVI~atn~~~-~ld~al~r~~rf~~~i~i~~P~-~~~R~ 382 (807)
.+...|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 -----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 -----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred -----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2445566666431 1234678888777654 58888887 999999999998 58999
Q ss_pred HHHHHH
Q 003620 383 EVLRIH 388 (807)
Q Consensus 383 ~il~~~ 388 (807)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 998754
No 320
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.77 E-value=2.4e-08 Score=98.49 Aligned_cols=181 Identities=20% Similarity=0.275 Sum_probs=99.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh-C----CeEEEEeCccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~-~----~~~i~v~~~~l 551 (807)
+..+.||+|.++..+.|.-.... | .-.+++|.|||||||||-+.++|.++ | -.++.+++++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 45678999999998888755432 1 11359999999999999999999986 2 35677777763
Q ss_pred cccccCCchHHHHHHHHHHhcC-C---CeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecC
Q 003620 552 LTMWFGESEANVREIFDKARQS-A---PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~a~~~-~---p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aT 627 (807)
.+ +. .-++--..|.+-+-. + -.|+++||+|++.. ..+.+.+|++.-. ++. .-++.++
T Consensus 90 RG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gAQQAlRRtMEiy--------S~t-tRFalaC 150 (333)
T KOG0991|consen 90 RG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GAQQALRRTMEIY--------SNT-TRFALAC 150 (333)
T ss_pred cc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HHHHHHHHHHHHH--------ccc-chhhhhh
Confidence 22 11 123333455443322 2 26999999999743 1223334433222 222 2344556
Q ss_pred CCCCC-CCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC-ccccHHHHHHHcCCCCHHhHHHHHHH
Q 003620 628 NRPDI-IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 628 n~~~~-ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~-~~~dl~~la~~t~g~sgadi~~l~~~ 697 (807)
|..+. |.|-.. |+- ++.|...+..+...-+....+...+. .+..++.+.-.++| |+++.++.
T Consensus 151 N~s~KIiEPIQS---RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNn 214 (333)
T KOG0991|consen 151 NQSEKIIEPIQS---RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNN 214 (333)
T ss_pred cchhhhhhhHHh---hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHH
Confidence 66554 455332 332 22233344433333333333332222 22346666665555 66665544
No 321
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.75 E-value=4.2e-08 Score=114.13 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.+++.+.|.||+|+|||||+++|++..
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 3456788899999999999999999999865
No 322
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.74 E-value=2e-07 Score=105.74 Aligned_cols=162 Identities=26% Similarity=0.362 Sum_probs=105.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhccC
Q 003620 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~ 315 (807)
++.+-+||+||||-||||||+.||...|..++.+|+++-.+ .....+++..+.+.- ....|..|++||||--.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 34455899999999999999999999999999999977432 112233343333321 12678999999998432
Q ss_pred CCCCCchhHHHHHHHHHHHHhhc--cc----CC-------------ceEEEEEecCCCCCCCHHhhccCccceEEEeCCC
Q 003620 316 KREKTHGEVERRIVSQLLTLMDG--LK----SR-------------AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVP 376 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~--~~----~~-------------~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P 376 (807)
+..+..+++++.. .. .. -.--||+.||+. .-|+|+-..-|...+.|..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 3345566666541 00 00 012477888875 45888766668888999999
Q ss_pred ChHHHHHHHHHHhcCCCCCC-chhhhHHhhhcCCCcHHHHHHHHH
Q 003620 377 DEVGRLEVLRIHTKNMKLSD-DVDLERIAKDTHGYVGADLAALCT 420 (807)
Q Consensus 377 ~~~~R~~il~~~~~~~~~~~-~~~l~~la~~t~g~~~~dl~~l~~ 420 (807)
......+-|+..+.+-.+.. ...+..+...+++ |++..+.
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCIN 509 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCIN 509 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHH
Confidence 88877777776665444332 2345566665544 5544443
No 323
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.74 E-value=1.4e-07 Score=94.60 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=92.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (807)
+..+||+||+|+|||++++.++..+... +..+... +. .-..+.++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4569999999999999999999887432 1211110 00 01224555556554
Q ss_pred Hh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
.. ....+++|||+|.+... ..+.|+..|+.... ...+|.+|+.+..+.+++++ |. ..+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 43 34569999999887421 33567778876433 44555566777889999987 55 47899
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC
Q 003620 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 374 ~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g 409 (807)
.+|+.++..++++.. + + ++..++.++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--I-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--C-CHHHHHHHHHHcCC
Confidence 999999988888765 2 2 22335555555544
No 324
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.74 E-value=3e-08 Score=118.16 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.5
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|+||+|||||||+++|++..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456788999999999999999999999875
No 325
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.74 E-value=9.1e-08 Score=103.89 Aligned_cols=157 Identities=24% Similarity=0.357 Sum_probs=95.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eEE-------
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFF------- 271 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i------- 271 (807)
.|..|+|+++.+..+.-.+-.| ...+++|.|+||+|||||++++++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5778999999887764332221 1357999999999999999999988732 111
Q ss_pred --EEechhh----------------hh--------hhhchh--HHHHH---HHHHH--HHhcCCeEEEEccchhccCCCC
Q 003620 272 --CINGPEI----------------MS--------KLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 272 --~v~~~~l----------------~~--------~~~g~~--~~~l~---~vf~~--a~~~~p~Il~iDEid~l~~~~~ 318 (807)
..+|... .. ...|.. ...++ .+|+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0111100 00 111110 00000 00110 0112236999999997632
Q ss_pred CCchhHHHHHHHHHHHHhhccc-----------CCceEEEEEecCCCC-CCCHHhhccCccceEEEeCCCCh-HHHHHHH
Q 003620 319 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVL 385 (807)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-~ld~al~r~~rf~~~i~i~~P~~-~~R~~il 385 (807)
.+...|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34456666664311 124678888887654 68888887 9999999999976 8888998
Q ss_pred HHH
Q 003620 386 RIH 388 (807)
Q Consensus 386 ~~~ 388 (807)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 753
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.74 E-value=4.7e-08 Score=113.23 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|.||+|+|||||+++|++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456788899999999999999999999875
No 327
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.74 E-value=4.5e-08 Score=111.64 Aligned_cols=144 Identities=26% Similarity=0.384 Sum_probs=87.9
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC----------------
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA---------------- 541 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~---------------- 541 (807)
..|+++.|+..+++.+.-.+. ....++|+||||||||++++++++.+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 378889999888776654332 2345999999999999999999975421
Q ss_pred ------------eEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHH
Q 003620 542 ------------NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 542 ------------~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
||.....+......+|.....-...+..|.. .+|||||++.+. ..+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 1111111100001112111011113344444 499999998863 34566666
Q ss_pred hcccCCC-----------CCCcEEEEecCCCC------C-----------------CCCccccCCCCcceeEEecCCCHH
Q 003620 610 TEMDGMS-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDED 655 (807)
Q Consensus 610 ~~ld~~~-----------~~~~vivi~aTn~~------~-----------------~ld~allrpgRfd~~i~~~~p~~~ 655 (807)
+.|+.-. ...++.+|+|+|.- + .|...++. |||..+.++.++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 6554321 12467889999862 1 36777887 99999999988764
No 328
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.3e-08 Score=107.26 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=94.7
Q ss_pred CCCCCceeeCCCCCChhHHHHHHHHHhCCe-------------------------EEEEeCccccc--------cc----
Q 003620 513 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 555 (807)
Q Consensus 513 ~~~~giLl~GppGtGKT~lakalA~~~~~~-------------------------~i~v~~~~l~~--------~~---- 555 (807)
+.+.++||+||+|+||+++|+++|..+.+. +..+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456679999999999999999999876431 12221110000 00
Q ss_pred --cC---------CchHHHHHHHHHHh----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCc
Q 003620 556 --FG---------ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (807)
Q Consensus 556 --vg---------~se~~i~~~f~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~ 620 (807)
-| -+-..||.+.+.+. .....|++||++|.+. ....|.||..|+. +..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCcC
Confidence 00 11245666655543 3445799999999973 4567889999995 5667
Q ss_pred EEEEecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHH
Q 003620 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 621 vivi~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~ 664 (807)
+++|.+|++|+.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8889999999999999988 88 58999999999999888664
No 329
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=98.85 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=61.7
Q ss_pred CeEEEEccchhccCCCCCCchhHHHH-HHHHHHHHhhccc--------CCceEEEEEec----CCCCCCCHHhhccCccc
Q 003620 302 PSIIFIDEIDSIAPKREKTHGEVERR-IVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFD 368 (807)
Q Consensus 302 p~Il~iDEid~l~~~~~~~~~~~~~~-v~~~Ll~~ld~~~--------~~~~viVI~at----n~~~~ld~al~r~~rf~ 368 (807)
-.|+||||||.++.+.+....++.+. +...|+-++++.. ...++++|++- ..|.++-|.|.. ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 36999999999998876444355443 4456777776532 23578888753 467788888875 999
Q ss_pred eEEEeCCCChHHHHHHHH
Q 003620 369 REIDIGVPDEVGRLEVLR 386 (807)
Q Consensus 369 ~~i~i~~P~~~~R~~il~ 386 (807)
-.+++...+.++-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999998888874
No 330
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=1.4e-07 Score=109.87 Aligned_cols=201 Identities=14% Similarity=0.198 Sum_probs=116.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEE-eCcc---c-
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE---L- 551 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v-~~~~---l- 551 (807)
+..++++.|.++..+.+..++.... ++..+.+.++|+||||||||++++++|++++..++.. +... .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4567889999888887777654211 1223334589999999999999999999987655442 1110 0
Q ss_pred ------------cccccCCchHHHHHHHHHHhc----------CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHH
Q 003620 552 ------------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 552 ------------~~~~vg~se~~i~~~f~~a~~----------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
++.+ .......+.+...+.. ....|||+||++.++.. ..+.+..+|
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lL 219 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEIL 219 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHH
Confidence 0111 1122334455555542 34579999999987632 122344444
Q ss_pred h-cccCCCCCCcEEEEecCCCCC--------------CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCC-----
Q 003620 610 T-EMDGMSAKKTVFIIGATNRPD--------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP----- 669 (807)
Q Consensus 610 ~-~ld~~~~~~~vivi~aTn~~~--------------~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~----- 669 (807)
. .... .....+|+++|..|. .|.++++..-|. .+|.|++.+.....+.|+..+....
T Consensus 220 r~~~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 220 RWKYVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHhhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 4 2211 222223333442221 134677631144 3799999999997777777775431
Q ss_pred ---CCccccHHHHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 670 ---VSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 670 ---~~~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
+.....+..|+.. +++||+.++......+.+
T Consensus 297 ~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 297 KIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSK 330 (637)
T ss_pred ccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhc
Confidence 1122345666664 444999888877766554
No 331
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.72 E-value=2.8e-07 Score=106.00 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=54.7
Q ss_pred ccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc--------------ccc--------------CCc
Q 003620 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MWF--------------GES 559 (807)
Q Consensus 511 ~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~--------------~~v--------------g~s 559 (807)
|+.+...+|+.||||+|||+|+..++... +.+.+.+...+-.. .++ ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 66667779999999999999999887754 44555555433211 000 011
Q ss_pred hHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 560 e~~i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45677778888888899999999988754
No 332
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=1.1e-07 Score=111.40 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=90.1
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCC--eEEEEeCccccccccCCch--HHHH--------HHHHHHhcCCCeEEEEecc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR--------EIFDKARQSAPCVLFFDEL 583 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~vg~se--~~i~--------~~f~~a~~~~p~ilfiDEi 583 (807)
.++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. .++..|.. .+||+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~---GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPR---GVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCC---CcEeccch
Confidence 46999999999999999999998754 5888875322333334310 0000 01112222 39999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCCcEEEEecCCCCC---CCCccccCCCCcceeEEe
Q 003620 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vivi~aTn~~~---~ld~allrpgRfd~~i~~ 649 (807)
+.+. ..+++.|+..|+.-. ....+.||+|+|..+ .|.++++. ||+.++.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9973 456677777775321 123678899999875 68889998 99998887
Q ss_pred cC-CCHHHHHHHHHHHh
Q 003620 650 PL-PDEDSRHQIFKACL 665 (807)
Q Consensus 650 ~~-p~~~~r~~Il~~~~ 665 (807)
.. |+.++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 64 57788999998876
No 333
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=7e-08 Score=112.01 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.+++.+.|+||+|+|||||+++|++.+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788899999999999999999999875
No 334
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.70 E-value=5.2e-08 Score=113.27 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.2
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|.||+|+|||||+++|++.+
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788889999999999999999999875
No 335
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.70 E-value=3.2e-07 Score=97.72 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 003620 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 289 ~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 354 (807)
+-|-++..|..+.|.+|+-|| +....+-.+..|+++++..++.+.+.-++..|++.
T Consensus 163 RQRVMIAMALan~P~lLIADE----------PTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADE----------PTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecC----------CcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 335566677888999999999 44455566778999999999888887888888875
No 336
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=2.3e-07 Score=108.12 Aligned_cols=169 Identities=12% Similarity=0.134 Sum_probs=98.3
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE-Eechh-
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-INGPE- 277 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-v~~~~- 277 (807)
+++.+..++++.|.++.++.++.++... .++..+++.++|+|||||||||+++.+|++++..++. ++...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 4677889999999999999998887542 1223455679999999999999999999998754422 11110
Q ss_pred --hh----------hh--hhchhHHHHHHHHHHHHh----------cCCeEEEEccchhccCCCCCCchhHHHHHHHHHH
Q 003620 278 --IM----------SK--LAGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 278 --l~----------~~--~~g~~~~~l~~vf~~a~~----------~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
.. .. ........++.++..+.. ....||||||++.++... .+....++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lL 219 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEIL 219 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHH
Confidence 00 00 001122344555555442 245699999998765321 11223333
Q ss_pred H-HhhcccCCceEEEEEecC-CCC--------------CCCHHhhccCccceEEEeCCCChHHHHHHHHHH
Q 003620 334 T-LMDGLKSRAHVIVIGATN-RPN--------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (807)
Q Consensus 334 ~-~ld~~~~~~~viVI~atn-~~~--------------~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~ 388 (807)
. ... ..+.+.+|++++ .+. .+.++++...|. ..|.|.+.....-...|+..
T Consensus 220 r~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rI 286 (637)
T TIGR00602 220 RWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRI 286 (637)
T ss_pred HHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHH
Confidence 3 211 122333333333 221 123566643344 46899999988855555443
No 337
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.69 E-value=1.3e-06 Score=91.77 Aligned_cols=63 Identities=37% Similarity=0.624 Sum_probs=43.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 278 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l 278 (807)
+.++|+.++.+..--++.+ . +-|-..+++||+.||||||||.||-.||+++| .+|+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m-------i-k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-------I-KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH-------H-HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4578887776654322222 1 11345689999999999999999999999997 34555555444
No 338
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.69 E-value=8.9e-08 Score=111.71 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=27.1
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|+||+|||||||+++|++..
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456788899999999999999999999975
No 339
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=6.4e-07 Score=98.67 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=114.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE-----------
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF----------- 271 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i----------- 271 (807)
.+-.+++|.|+++.++.|.+.+... .-+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4557889999999999998877651 22446999999999999999999987632100
Q ss_pred --EE--ech-----------hhh--hh---hhc------hhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCc
Q 003620 272 --CI--NGP-----------EIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 272 --~v--~~~-----------~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~ 321 (807)
.+ .|+ ++. .. ..+ -.-..++.+.+.. ....+.|++|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 010 000 00 000 0123455554433 23567899999998773
Q ss_pred hhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhh
Q 003620 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLE 401 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~ 401 (807)
....+.|+..++... .+.++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 234466777777543 355666788888889888877 65 56899999999888888764321 1122234
Q ss_pred HHhhhcCCCcH
Q 003620 402 RIAKDTHGYVG 412 (807)
Q Consensus 402 ~la~~t~g~~~ 412 (807)
.++..+.|-.+
T Consensus 223 ~l~~~s~Gsp~ 233 (365)
T PRK07471 223 ALAALAEGSVG 233 (365)
T ss_pred HHHHHcCCCHH
Confidence 55555655443
No 340
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5e-07 Score=98.30 Aligned_cols=169 Identities=12% Similarity=0.188 Sum_probs=108.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--------EEEEechh
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFCINGPE 277 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--------~i~v~~~~ 277 (807)
+|++|.|++..++.++..+... ..+..+||+||+|+|||++|+.+|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5789999999999998877531 223468999999999999999999976332 22232210
Q ss_pred hhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC
Q 003620 278 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 353 (807)
+. .-.-..++.+.+.+ .....-|++||++|.+- ....+.|+..++... .++++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 01 11223466655533 22344699999988763 223467888887643 34555556677
Q ss_pred CCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCC
Q 003620 354 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 354 ~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g 409 (807)
++.+.+.+++ |. ..+.+..|+.++-...+...... . +...+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 8899999988 55 47889999988877777654332 1 22234445554444
No 341
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.68 E-value=5.4e-07 Score=94.51 Aligned_cols=178 Identities=18% Similarity=0.268 Sum_probs=104.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechh------hhhh--------h--hchhHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPE------IMSK--------L--AGESESNLRKAFEE 296 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~------l~~~--------~--~g~~~~~l~~vf~~ 296 (807)
..++||+|++|.|||++++.++...+ .+++.+..+. ++.. + .......-..+..-
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 46799999999999999999987653 2455555422 1111 0 01122333444556
Q ss_pred HHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCc--eEEEEEecCCCCC--CCHHhhccCccceEEE
Q 003620 297 AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNS--IDPALRRFGRFDREID 372 (807)
Q Consensus 297 a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~--~viVI~atn~~~~--ld~al~r~~rf~~~i~ 372 (807)
.+...+-+|+|||+|.++.... .-.+ .+++.+..+.... .++.+|+..-... -|+.+.+ ||.. +.
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~----~~qr----~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~ 209 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSY----RKQR----EFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FE 209 (302)
T ss_pred HHHcCCcEEEeechHHHhcccH----HHHH----HHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-cc
Confidence 6677888999999999763321 1122 2333333333332 4555554433232 3677777 8854 34
Q ss_pred eCCCCh-HHHHHHHHHHhcCCCCCCch------hhhHHhhhcCCCcHHHHHHHHHHHHHHHHHhhc
Q 003620 373 IGVPDE-VGRLEVLRIHTKNMKLSDDV------DLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 373 i~~P~~-~~R~~il~~~~~~~~~~~~~------~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
+|.-.. ++...++..+.+.+++.... -...+...+.|..| ++..++..|+..+++...
T Consensus 210 Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 210 LPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 443332 33445666666666654322 23556667788765 677888889888887653
No 342
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.68 E-value=6.7e-08 Score=111.93 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=27.4
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|.||+|+|||||+++|++.+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456788999999999999999999999875
No 343
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.9e-08 Score=100.12 Aligned_cols=98 Identities=36% Similarity=0.544 Sum_probs=73.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hhhchh-HHHHHHHHHHHH----hcCCeEEEEccchhccC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGES-ESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~~-~~~l~~vf~~a~----~~~p~Il~iDEid~l~~ 315 (807)
..+|||+||+|||||.||+.+|+.++.+|-.-++..+.. .|+|+- +..+..+++.+. .....|++|||||.++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 357999999999999999999999999999888887764 577764 444566666542 34557999999999998
Q ss_pred CCCCCch--hH-HHHHHHHHHHHhhcc
Q 003620 316 KREKTHG--EV-ERRIVSQLLTLMDGL 339 (807)
Q Consensus 316 ~~~~~~~--~~-~~~v~~~Ll~~ld~~ 339 (807)
+..+++- ++ ..-+...|+.++++-
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 7654321 12 234557788888763
No 344
>PRK08116 hypothetical protein; Validated
Probab=98.67 E-value=3.6e-08 Score=104.28 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccccccc----CCchHHHHHHHHHHhcCCCeEEEEeccchhh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~v----g~se~~i~~~f~~a~~~~p~ilfiDEid~l~ 587 (807)
..|++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.+......+++..... .+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEecccCCC
Confidence 3579999999999999999999986 66788888888765432 11112223344443333 599999986521
Q ss_pred hccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC-CC----CCccccCCCCc---ceeEEecCCCH
Q 003620 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDE 654 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~-~~----ld~allrpgRf---d~~i~~~~p~~ 654 (807)
..+....+|...++...... ..+|.|||.+ +. ++..+.. |+ ...|.++.+|.
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12233455555555432222 2356666654 33 4666665 64 34567777765
No 345
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.67 E-value=1.2e-07 Score=110.18 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=27.8
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
++.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567888999999999999999999998753
No 346
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.67 E-value=7.8e-08 Score=112.40 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.9
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
++.+.+++.+.|.||+|||||||++.|++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567888999999999999999999998764
No 347
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.67 E-value=2.3e-07 Score=91.78 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=85.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----eEEEEe
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~ 274 (807)
+++.+..+.||+|-++.++.+.-+..- ..-.+++|.|||||||||-+.++|.++-. -++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 456777889999999999998765543 12347999999999999999999988632 245666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHhc---CCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEec
Q 003620 275 GPEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~l~~vf~~a~~~---~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 351 (807)
.++-.+ ..-...+++..-|.-... .-.|+++||.|++... ....|...|+-+....++. .+|
T Consensus 86 ASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRFa--laC 150 (333)
T KOG0991|consen 86 ASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRFA--LAC 150 (333)
T ss_pred Cccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchhh--hhh
Confidence 544211 111223333332222222 2259999999987421 2244566666665544444 467
Q ss_pred CCCCCCCHHhhc
Q 003620 352 NRPNSIDPALRR 363 (807)
Q Consensus 352 n~~~~ld~al~r 363 (807)
|..+.+-+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 777766554544
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=98.66 E-value=6.7e-08 Score=115.55 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANE 265 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (807)
++.+.++..+.|+||+|+|||||+++|++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 456788899999999999999999999974
No 349
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=8.6e-08 Score=112.08 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|+||+|||||||++.|++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456888999999999999999999999875
No 350
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.66 E-value=3.8e-08 Score=97.99 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 207 ~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
|++|.|++..+..+.-...- +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999998887544322 35899999999999999999998775
No 351
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.63 E-value=1.4e-07 Score=102.91 Aligned_cols=193 Identities=23% Similarity=0.253 Sum_probs=109.7
Q ss_pred cccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc---
Q 003620 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 553 (807)
Q Consensus 480 ~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~--- 553 (807)
++++.|.....+.+.+.+.... .....|||+|++||||+++|+++...+ +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3455666555555544433211 123459999999999999999998765 36899999987531
Q ss_pred --cccCCch-------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----C--
Q 003620 554 --MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-- 617 (807)
Q Consensus 554 --~~vg~se-------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~-- 617 (807)
.++|... ......|..|.. ..||||||+.+.. .+...|+..|+.-. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~g---GtL~l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADG---GTLFLDELATAPM--------------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCC---CeEEeCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 1222110 001223444443 4899999999843 34455555554311 0
Q ss_pred --CCcEEEEecCCCC-------CCCCccccCCCCc-ceeEEecCCCH--HHHHHHHHHHhccC----CCC--cccc---H
Q 003620 618 --KKTVFIIGATNRP-------DIIDPALLRPGRL-DQLIYIPLPDE--DSRHQIFKACLRKS----PVS--KDVD---L 676 (807)
Q Consensus 618 --~~~vivi~aTn~~-------~~ld~allrpgRf-d~~i~~~~p~~--~~r~~Il~~~~~~~----~~~--~~~d---l 676 (807)
..++-||++|+.. ..+.+.|.. || ...|.+|+.-+ ++...+++.++++. ... ..++ +
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1246778877763 234556665 77 45677776643 44555666655322 111 1122 3
Q ss_pred HHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 677 RALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 677 ~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
..|..+.-=-+-++|++++..|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 44444332235578888888887643
No 352
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=109.42 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=26.7
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999864
No 353
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.63 E-value=1.1e-07 Score=92.94 Aligned_cols=134 Identities=26% Similarity=0.372 Sum_probs=87.7
Q ss_pred chhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC-----------------------
Q 003620 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 541 (807)
Q Consensus 485 g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~----------------------- 541 (807)
|++++.+.|...+... +.+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 5677777777766531 23456899999999999999999987621
Q ss_pred eEEEEeCccccccccCCchHHHHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCC
Q 003620 542 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 617 (807)
Q Consensus 542 ~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~ 617 (807)
.++.++..+-.. .-....++.+.+.+.. ....|++|||+|.+ .....+.||..|+. +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEE--P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcC--C
Confidence 233333322100 0124567777766543 34579999999997 35678999999996 4
Q ss_pred CCcEEEEecCCCCCCCCccccCCCCcceeEEecCC
Q 003620 618 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 618 ~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p 652 (807)
..++++|.+|+.++.|-|.+.+ |+- .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 4577888888888988888887 774 5666543
No 354
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.62 E-value=2e-07 Score=101.68 Aligned_cols=168 Identities=21% Similarity=0.280 Sum_probs=99.6
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccccc-----ccCCch-------HHHHHHHHHHhcCCCeEEEE
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESE-------ANVREIFDKARQSAPCVLFF 580 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-----~vg~se-------~~i~~~f~~a~~~~p~ilfi 580 (807)
..|||+|++||||+++|+++...+ +.+|+.|+|..+... .+|... ..-...|..|.. ..|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~g---GtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADG---GTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCC---CEEEe
Confidence 459999999999999999998766 369999999865321 112110 011123555543 49999
Q ss_pred eccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC---------CCCcEEEEecCCCC-------CCCCccccCCCCcc
Q 003620 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRLD 644 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~vivi~aTn~~-------~~ld~allrpgRfd 644 (807)
|||+.|.. .+...|+..|+.-. ...++-||++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 99999743 34555555554321 12357788888763 133455555 664
Q ss_pred -eeEEecCCCH--HHHHHHHHHHhccC----CCC--cccc---HHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 645 -QLIYIPLPDE--DSRHQIFKACLRKS----PVS--KDVD---LRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 645 -~~i~~~~p~~--~~r~~Il~~~~~~~----~~~--~~~d---l~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
..|.+|+.-+ ++...+++.++.+. ... ..++ +..|..+.---+-++|++++..|+..+
T Consensus 164 ~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4566666542 45555666655321 111 1122 344444432335678888888887755
No 355
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=4.2e-07 Score=98.03 Aligned_cols=128 Identities=19% Similarity=0.302 Sum_probs=91.7
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCC------------------------eEEEEeCccccccccCCchHHHHHHHHH
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~~f~~ 569 (807)
.+.++||+||.|+||+++|+++|..+-+ .|+.+...+ ++.+ ....+|++-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 3456999999999999999999987632 122222110 1111 23456665444
Q ss_pred H----hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcce
Q 003620 570 A----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~ 645 (807)
+ ......|++||++|.+. ....|.||..|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 3 34455799999999973 4567889999996 45567778888889999999887 885
Q ss_pred eEEecCCCHHHHHHHHHHH
Q 003620 646 LIYIPLPDEDSRHQIFKAC 664 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~ 664 (807)
.+.|++|+.++..+.|...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7889999998888877754
No 356
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.61 E-value=4.1e-07 Score=92.66 Aligned_cols=38 Identities=45% Similarity=0.712 Sum_probs=32.0
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhC--CeEEEEeCcccc
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELL 552 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~ 552 (807)
.+++||.||||||||.||-+++.+++ .||..+.+++++
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy 103 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY 103 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh
Confidence 46799999999999999999999985 577766666664
No 357
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.3e-07 Score=97.84 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=26.7
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.|-.++.+.|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4556778889999999999999999998763
No 358
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.61 E-value=2.5e-07 Score=105.13 Aligned_cols=143 Identities=28% Similarity=0.397 Sum_probs=88.4
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCC--eEEEEeCccccc---
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT--- 553 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~--- 553 (807)
.+.++.|...+++.+.-. ......++|+||||||||++++.+++.+.. .-..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 455666766666544211 123355999999999999999999987531 111111111110
Q ss_pred -----------------------cccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHh
Q 003620 554 -----------------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (807)
Q Consensus 554 -----------------------~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~ 610 (807)
..+|.....-...+..|... +||+||++.+ ...+++.|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~--------------~~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF--------------ERRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC--------------CHHHHHHHHH
Confidence 01222111112356666665 9999999775 2456666776
Q ss_pred cccCCC-----------CCCcEEEEecCCCCC---------------------CCCccccCCCCcceeEEecCCCHH
Q 003620 611 EMDGMS-----------AKKTVFIIGATNRPD---------------------IIDPALLRPGRLDQLIYIPLPDED 655 (807)
Q Consensus 611 ~ld~~~-----------~~~~vivi~aTn~~~---------------------~ld~allrpgRfd~~i~~~~p~~~ 655 (807)
.|+.-. ...++.+|+|+|... .|..+++. |||..+.++.|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 664321 134689999999742 36678888 99999999998754
No 359
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1e-07 Score=104.08 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=120.8
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh----CCeEEEEeCccccc
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 553 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~ 553 (807)
..+.+++|-..--+.+.+.+.. . -.....+|++|++||||+.+|++|...+ ..|||.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4456666665554444444332 0 0123459999999999999999997543 56999999987743
Q ss_pred c-------------ccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC----
Q 003620 554 M-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---- 616 (807)
Q Consensus 554 ~-------------~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---- 616 (807)
. |.| ....-..+|+.|... .||+|||..+.. .....||..||..+
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEec
Confidence 2 333 233445677888777 999999999754 34556666666521
Q ss_pred -----CCCcEEEEecCCC--CCCCCc--cccCCCCcceeEEecCCCH--HHHHHHHHHHh----ccCCCCccccH----H
Q 003620 617 -----AKKTVFIIGATNR--PDIIDP--ALLRPGRLDQLIYIPLPDE--DSRHQIFKACL----RKSPVSKDVDL----R 677 (807)
Q Consensus 617 -----~~~~vivi~aTn~--~~~ld~--allrpgRfd~~i~~~~p~~--~~r~~Il~~~~----~~~~~~~~~dl----~ 677 (807)
-..+|-+|+|||. ++.+-. .+.| -|+...|.+|+.-+ +++..+.+.++ ++......++. .
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1346777888864 233333 4443 16667777776644 44445555554 33433333332 2
Q ss_pred HHHHHc-CCCCHHhHHHHHHHHHHHHHHHH
Q 003620 678 ALAKYT-QGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 678 ~la~~t-~g~sgadi~~l~~~A~~~a~~~~ 706 (807)
.|..+. .| +-+++++++..++..+.-..
T Consensus 285 ~L~~y~~pG-NirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 285 ALLAYDWPG-NIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHhCCCCC-cHHHHHHHHHHHHHHhcccc
Confidence 233222 33 44699999999988875444
No 360
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.60 E-value=3.4e-07 Score=102.26 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=75.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechh-hhhhhhchh-HHHH--HHHHHHHHhc---CCeEEEEccc
Q 003620 240 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPE-IMSKLAGES-ESNL--RKAFEEAEKN---APSIIFIDEI 310 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~-l~~~~~g~~-~~~l--~~vf~~a~~~---~p~Il~iDEi 310 (807)
..+.+|||.||||||||++|++++...+. +|..+.+.- ......|.. -... ..-|.....+ ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 45678999999999999999999987653 333333210 111112211 0000 1112211111 2349999999
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHhhccc--------CCceEEEEEecCCCCC---CCHHhhccCccceEEEeCCCCh-
Q 003620 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDE- 378 (807)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~viVI~atn~~~~---ld~al~r~~rf~~~i~i~~P~~- 378 (807)
..+. ......|+..|..-. .-+..+++++||...+ ..+++.. ||...+.+++|+.
T Consensus 117 ~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 117 WKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred ccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 7443 335567777774321 1112344455564322 2236655 8888899999974
Q ss_pred HHHHHHHHHH
Q 003620 379 VGRLEVLRIH 388 (807)
Q Consensus 379 ~~R~~il~~~ 388 (807)
++-.+++...
T Consensus 184 ~~e~~lL~~~ 193 (498)
T PRK13531 184 ANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHcc
Confidence 5557777643
No 361
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.57 E-value=1.1e-06 Score=99.80 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=131.9
Q ss_pred CceeeCCCCCChhHHHHHHHHHh----------CCeEEEEeCccccc----------cccCCch------HHHHHHHHHH
Q 003620 517 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGESE------ANVREIFDKA 570 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~----------~~~~i~v~~~~l~~----------~~vg~se------~~i~~~f~~a 570 (807)
.+.+.|-||||||.++..+..++ .+.|+.|++-.+.+ .+.|+.. ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 37788999999999999888754 46789999877643 2234332 2233444421
Q ss_pred -hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCcccc-CC-CCcc-ee
Q 003620 571 -RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL-RP-GRLD-QL 646 (807)
Q Consensus 571 -~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~all-rp-gRfd-~~ 646 (807)
....++|++|||.|.|..+. ..|+-.|+..-. .+..+++||+..|..+....-+. |+ +|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998642 334444433321 13567889998888776443333 11 3666 67
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 003620 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGA--DITEICQRACKYAIRENIEKDIERERRRRDNPEAM 724 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sga--di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 724 (807)
|.|.+++.++..+|+...+.....-.+--++.+|++-...||. -...+|+.|+..|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 8899999999999999999776322222234445544445663 33357888888877776411
Q ss_pred cccccccccccccHHHHHHHHhhcCCCC
Q 003620 725 DEDAAEDEVSEIKAAHFEESMKFARRSV 752 (807)
Q Consensus 725 ~~~~~~~~~~~i~~~~~~~a~~~~~~s~ 752 (807)
.......|++.|+.+|++.+..+.
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhhhh
Confidence 012234688999999998875543
No 362
>PRK13409 putative ATPase RIL; Provisional
Probab=98.57 E-value=1.8e-07 Score=109.82 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+++.+.|+||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46778899999999999999999998753
No 363
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=4.2e-07 Score=98.98 Aligned_cols=149 Identities=20% Similarity=0.261 Sum_probs=99.0
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCCe----------------EEEEeCcccccccc-C----CchHHHHHHHH----
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN----------------FISVKGPELLTMWF-G----ESEANVREIFD---- 568 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~~----------------~i~v~~~~l~~~~v-g----~se~~i~~~f~---- 568 (807)
.+..+||+||+|+||+++|.++|..+-+. +-.-+-+|+.--.. + -+-..+|.+-+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 44569999999999999999999876220 00111122211000 0 11234555444
Q ss_pred HHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEE
Q 003620 569 KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 569 ~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~ 648 (807)
.+......|++||++|.+. ....|.||+.|+. +..+.++|.+|+.|+.|-|.+.+ |+. .+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred ccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 4445566899999999973 4567889999996 55677888888889999999987 887 679
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCC
Q 003620 649 IPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 649 ~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g 685 (807)
|++|+.++..+.+... .+++. .+...++..+.|
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G 196 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAG 196 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCC
Confidence 9999998888777543 22322 224455556555
No 364
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.3e-06 Score=94.88 Aligned_cols=148 Identities=17% Similarity=0.265 Sum_probs=97.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (807)
+..+||+||+|+|||++|+.+|..+.+. ++.+....- + ..-.-..+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 4569999999999999999999887531 222221000 0 011234566665544
Q ss_pred H----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
. .....|++||++|.+-. ...+.|++.++... .++++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 23456899999998742 34577888888743 467788899999999999998 76 44899
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCc
Q 003620 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 411 (807)
Q Consensus 374 ~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~ 411 (807)
++|+.++-.+.|..... ...+.....++...+|-.
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSP 197 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCH
Confidence 99999888877765431 112223344555555543
No 365
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.55 E-value=5e-07 Score=98.74 Aligned_cols=124 Identities=27% Similarity=0.391 Sum_probs=84.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC------------------------CeEEEEechhhhhhhhchhHHHHHHHHHHHHh
Q 003620 244 GILLYGPPGSGKTLIARAVANETG------------------------AFFFCINGPEIMSKLAGESESNLRKAFEEAEK 299 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~------------------------~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 299 (807)
.+||+||||+|||++|.++|+.+. ..++.++.++..... .....++.+.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999886 356777765543221 123445555444322
Q ss_pred ----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCC
Q 003620 300 ----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 300 ----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~ 375 (807)
...-+++|||+|.+.. ...+.++..+..... +..+|.+||.++.+-+.+++ |. ..+.|.+
T Consensus 104 ~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~~--~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPPK--NTRFILITNDPSKILPTIRS--RC-QRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCCC--CeEEEEEcCChhhccchhhh--cc-eeeecCC
Confidence 3357999999998854 234567777766443 56677788999999888887 55 4567776
Q ss_pred CChHHHHHHH
Q 003620 376 PDEVGRLEVL 385 (807)
Q Consensus 376 P~~~~R~~il 385 (807)
|........+
T Consensus 168 ~~~~~~i~~~ 177 (325)
T COG0470 168 PSRLEAIAWL 177 (325)
T ss_pred chHHHHHHHh
Confidence 5554444333
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.55 E-value=2.6e-06 Score=91.16 Aligned_cols=63 Identities=38% Similarity=0.614 Sum_probs=42.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh
Q 003620 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 278 (807)
Q Consensus 208 ~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l 278 (807)
+.++|+.++.+..--++++- +. +--.++++||.||||||||.||-++|+++| .||..++++++
T Consensus 24 ~GlVGQ~~AReAagiiv~mI-k~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI-KE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH-HT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccChHHHHHHHHHHHHHH-hc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 46899988877765444441 11 224578999999999999999999999997 45666665554
No 367
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.55 E-value=2.1e-07 Score=106.91 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=110.5
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHH-----------hCCeEEEEe
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISVK 547 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~-----------~~~~~i~v~ 547 (807)
.++++.|.....+.+.+.+...- .....+||+|++||||+++|+++-.. .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46778888877777766554211 12345999999999999999999887 356999999
Q ss_pred Ccccccc-----ccCCch--------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC
Q 003620 548 GPELLTM-----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 548 ~~~l~~~-----~vg~se--------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
|..+... .+|..+ ..-..+|+.|... .||||||+.+.. .+...||..|+.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~--------------~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMPL--------------PLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCCH--------------HHHHHHHhhhhc
Confidence 9865321 122111 0112356666544 899999999743 345556655543
Q ss_pred CC-----C----CCcEEEEecCCCCC--CCCccccCCC---Ccc-eeEEecCCCH--HHHHHHHHHHhcc----C--CCC
Q 003620 615 MS-----A----KKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRK----S--PVS 671 (807)
Q Consensus 615 ~~-----~----~~~vivi~aTn~~~--~ld~allrpg---Rfd-~~i~~~~p~~--~~r~~Il~~~~~~----~--~~~ 671 (807)
-. + .-++-||++||+.- .+.....|+. |+. ..|++|+.-+ ++...+++.++++ . ++.
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 21 1 12456888887641 1221111110 232 3444554432 4455566666654 2 222
Q ss_pred cccc------HHHHHHHcCCCCHHhHHHHHHHHHHH
Q 003620 672 KDVD------LRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 672 ~~~d------l~~la~~t~g~sgadi~~l~~~A~~~ 701 (807)
.+.- +..|..+.-=-+-++|++++..++..
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 2110 02222222223567999999888774
No 368
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.55 E-value=4.6e-07 Score=105.95 Aligned_cols=197 Identities=22% Similarity=0.287 Sum_probs=114.8
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~ 553 (807)
...++++.|.....+.+.+.+.... .....|||+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3567778888777666665554211 123459999999999999999999886 46999999987632
Q ss_pred cc-----cCCchH-------HHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----
Q 003620 554 MW-----FGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (807)
Q Consensus 554 ~~-----vg~se~-------~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----- 616 (807)
.+ +|.... .....|..|. ...||||||+.+.. .+...|+..|+.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECC
Confidence 11 121100 0011233333 34899999999743 34555666554321
Q ss_pred C----CCcEEEEecCCCCC-------CCCccccCCCCcc-eeEEecCCC--HHHHHHHHHHHhccC----CCCcccc---
Q 003620 617 A----KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPD--EDSRHQIFKACLRKS----PVSKDVD--- 675 (807)
Q Consensus 617 ~----~~~vivi~aTn~~~-------~ld~allrpgRfd-~~i~~~~p~--~~~r~~Il~~~~~~~----~~~~~~d--- 675 (807)
. ..++-+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|++.++++. .....++
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 12467788877531 12233333 443 456777664 255556666666432 1111122
Q ss_pred HHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 676 LRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 676 l~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
+..|..+.---+-++|++++..|+..+-
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLSR 429 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 4445544433466789999998886543
No 369
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.54 E-value=2.1e-07 Score=111.19 Aligned_cols=194 Identities=21% Similarity=0.249 Sum_probs=107.7
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccc--
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-- 552 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~-- 552 (807)
..|+++.|.+...+.+.+.+.... .....+||+|++||||+++|+++...+ +.+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 356677776665555544433211 123459999999999999999998876 3699999987652
Q ss_pred ---ccccCCc----hHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----C---
Q 003620 553 ---TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A--- 617 (807)
Q Consensus 553 ---~~~vg~s----e~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~--- 617 (807)
+.++|.. .......|+.|. ...||||||+.+.. .+...|+..|+.-. .
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 2223311 111111243333 34899999999743 34455555554311 1
Q ss_pred -CCcEEEEecCCCCCCCCccccCCCCc---------ceeEEecCCCH--HHHHHHHHHHhccC------CCC-ccccHHH
Q 003620 618 -KKTVFIIGATNRPDIIDPALLRPGRL---------DQLIYIPLPDE--DSRHQIFKACLRKS------PVS-KDVDLRA 678 (807)
Q Consensus 618 -~~~vivi~aTn~~~~ld~allrpgRf---------d~~i~~~~p~~--~~r~~Il~~~~~~~------~~~-~~~dl~~ 678 (807)
.-++-||+|||..- ..+...|+| ...|.+|+.-+ ++...+++.++++. ++. .+.-+..
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 11567888888642 111222333 24455554432 34445555555432 111 1122444
Q ss_pred HHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 679 LAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 679 la~~t~g~sgadi~~l~~~A~~~a 702 (807)
|..+.---+-++|+++++.|+..+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC
Confidence 554443346678889988887654
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.54 E-value=2.6e-08 Score=91.00 Aligned_cols=104 Identities=32% Similarity=0.453 Sum_probs=56.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech-hhh-hhhhch----hHH-----HHHHHHHHHHhcCCeEEEEccchh
Q 003620 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EIM-SKLAGE----SES-----NLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~-~l~-~~~~g~----~~~-----~l~~vf~~a~~~~p~Il~iDEid~ 312 (807)
+|||.|+||+|||++++++|+.++..|..|.+. ++. +...|. ... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888763 332 111111 000 001111 24999999976
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHhhccc---------CCceEEEEEecCCCC-----CCCHHhhccCcc
Q 003620 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN-----SIDPALRRFGRF 367 (807)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~viVI~atn~~~-----~ld~al~r~~rf 367 (807)
..+ +..+.|++.|..-+ -...++||+|.|+.+ .++.++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 543 35567777775422 123588999999765 55666665 55
No 371
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.52 E-value=4.4e-07 Score=107.55 Aligned_cols=156 Identities=24% Similarity=0.361 Sum_probs=96.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC------------------
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 267 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~------------------ 267 (807)
.|.+|.|.+..+..+.-....| ...+|||.|++|||||++|++|++.+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5778999998887664333221 123699999999999999999999883
Q ss_pred -----------------CeEEEEechhhhhhhhchh--HHHHH---HHHHH--HHhcCCeEEEEccchhccCCCCCCchh
Q 003620 268 -----------------AFFFCINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 268 -----------------~~~i~v~~~~l~~~~~g~~--~~~l~---~vf~~--a~~~~p~Il~iDEid~l~~~~~~~~~~ 323 (807)
.+|+.+.+........|.. ...++ ..++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 3455444332222222221 11110 00100 0011235999999997742
Q ss_pred HHHHHHHHHHHHhhcc-----------cCCceEEEEEecCCC-CCCCHHhhccCccceEEEeCCCC-hHHHHHHHHH
Q 003620 324 VERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRP-NSIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 387 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~-----------~~~~~viVI~atn~~-~~ld~al~r~~rf~~~i~i~~P~-~~~R~~il~~ 387 (807)
.+...|+..|+.- ....++.+|+++|.. ..+.++|.. ||+..+.++.+. .+++.++++.
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677777532 112458889988854 357788887 898888888775 4667777653
No 372
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=8.7e-07 Score=95.47 Aligned_cols=152 Identities=23% Similarity=0.298 Sum_probs=99.6
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCCe-------------EEEEeCcccccc-----ccC------CchHHHHHHHHH
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN-------------FISVKGPELLTM-----WFG------ESEANVREIFDK 569 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~~-------------~i~v~~~~l~~~-----~vg------~se~~i~~~f~~ 569 (807)
.+..+||+||+|+||+++|.++|..+-+. +..-+-+|+.-- .-| -.-..||++.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 34569999999999999999999865221 000011222100 001 123456766665
Q ss_pred Hhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcce
Q 003620 570 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~ 645 (807)
+.. ....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.|-|.+.+ |+.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq- 165 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ- 165 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-
Confidence 543 334799999999973 3567889999886 34566777778888889899987 885
Q ss_pred eEEecCCCHHHHHHHHHHHhccCCCCccccHHHHHHHcCCCCHH
Q 003620 646 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 689 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~~~~~~dl~~la~~t~g~sga 689 (807)
.+.|++|+.++..+.+... .++ ..+...++..+.|--+.
T Consensus 166 ~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGL 204 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHH
Confidence 7889999998888777642 222 22344566666665443
No 373
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.52 E-value=2.6e-07 Score=108.60 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|+||+|||||||+++|++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788999999999999999999999875
No 374
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=3.1e-06 Score=93.02 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=69.8
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh--CCeE-EEE--------------------------------echhhhh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFF-FCI--------------------------------NGPEIMS 280 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l--~~~~-i~v--------------------------------~~~~l~~ 280 (807)
++.+..++...|+|++|+|||||.|+||+.- +.+. -.+ .-.++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 4556778899999999999999999999821 0000 000 0011111
Q ss_pred h-h--hc-------------hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCce
Q 003620 281 K-L--AG-------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (807)
Q Consensus 281 ~-~--~g-------------~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (807)
+ . .| ...++++..+..|.-..|++|++|| +.+.++-..+.+|-+.+....
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~---- 245 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK---- 245 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC----
Confidence 0 0 00 1235667778888889999999999 566666677788877776543
Q ss_pred EEEEEecCCCCCCC
Q 003620 345 VIVIGATNRPNSID 358 (807)
Q Consensus 345 viVI~atn~~~~ld 358 (807)
+.++..+|+..-+|
T Consensus 246 ~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLN 259 (582)
T ss_pred ceEEEEeccHHHHH
Confidence 44555567655444
No 375
>PRK04132 replication factor C small subunit; Provisional
Probab=98.51 E-value=1.7e-06 Score=103.58 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=109.8
Q ss_pred CCceEEEEc--CCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcC------CeEEEE
Q 003620 241 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 307 (807)
Q Consensus 241 ~~~~vLL~G--ppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~------p~Il~i 307 (807)
|+-+-+..| |++.||||+|++||+++ +..++.+|+++..+ -..++.++..+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 344556779 99999999999999997 45789999987422 235666665544322 259999
Q ss_pred ccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHH
Q 003620 308 DEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 308 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~ 387 (807)
||+|.+.. .....|+..|+... .++.+|.+||++..+.+.+++ |+ ..+.|..|+.++-...|+.
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99998842 23466888887644 367788889999999999987 65 6689999998888777776
Q ss_pred HhcCCCCC-CchhhhHHhhhcCCCcHHHHH
Q 003620 388 HTKNMKLS-DDVDLERIAKDTHGYVGADLA 416 (807)
Q Consensus 388 ~~~~~~~~-~~~~l~~la~~t~g~~~~dl~ 416 (807)
.+.+..+. ++..+..++..++|-...-+.
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 55432222 344678888888775544443
No 376
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.51 E-value=2.7e-07 Score=108.39 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=27.4
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..+.|+||+|+|||||+++|++..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456788889999999999999999999875
No 377
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=4.1e-07 Score=92.33 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.+++.|.|.||+|||||||.+.||+..
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456889999999999999999999999865
No 378
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=3.4e-06 Score=91.17 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=115.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (807)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999998887652 124579999999999999999999876321
Q ss_pred --EEEEechhhh-hh--------hhc--------hhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHH
Q 003620 270 --FFCINGPEIM-SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 326 (807)
Q Consensus 270 --~i~v~~~~l~-~~--------~~g--------~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~ 326 (807)
++.+...... ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222211000 00 000 01124555544433 23457999999987732
Q ss_pred HHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhh
Q 003620 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (807)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~ 406 (807)
...+.|+..|+... + .++|..|+.++.+-|.+++ |. ..+.++.++.++-.++|+.....- ..+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHH
Confidence 23467888888764 3 3556677788999999998 65 568999999998888887553211 111224566666
Q ss_pred cCCCcHHHH
Q 003620 407 THGYVGADL 415 (807)
Q Consensus 407 t~g~~~~dl 415 (807)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 666554433
No 379
>PRK08116 hypothetical protein; Validated
Probab=98.49 E-value=7.5e-07 Score=94.25 Aligned_cols=104 Identities=18% Similarity=0.381 Sum_probs=63.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhch----hHHHHHHHHHHHHhcCCeEEEEccchhcc
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
+.+++|+|++|||||+|+.++++.+ +..++.++..+++...... .......+++.. ....+|+|||+...-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6778888888876543221 111122233332 234599999985321
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC-CCCCC
Q 003620 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-RPNSI 357 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn-~~~~l 357 (807)
. ......+|..+++........++ .||| .++.+
T Consensus 192 ------~---t~~~~~~l~~iin~r~~~~~~~I-iTsN~~~~eL 225 (268)
T PRK08116 192 ------D---TEWAREKVYNIIDSRYRKGLPTI-VTTNLSLEEL 225 (268)
T ss_pred ------C---CHHHHHHHHHHHHHHHHCCCCEE-EECCCCHHHH
Confidence 1 12334567777776443333344 4555 44443
No 380
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.49 E-value=1.9e-06 Score=98.76 Aligned_cols=171 Identities=19% Similarity=0.267 Sum_probs=97.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-------ccccCCchH-----HHHHHHH-----HHhc------
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ------ 572 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------~~~vg~se~-----~i~~~f~-----~a~~------ 572 (807)
+-+||+|||||||||++++||.+++..+.....+... ..|.+.... .-...|. .++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 3578999999999999999999999888877544321 111111110 0011222 1121
Q ss_pred -----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCC-cEEEEec-C------CCC--------C
Q 003620 573 -----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGA-T------NRP--------D 631 (807)
Q Consensus 573 -----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~-~vivi~a-T------n~~--------~ 631 (807)
..+.||++||+-.++.. ...+..+.|.+.+.. ... ++|+|.+ + |.. .
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred CCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhh
Confidence 24679999998765432 112333333333332 122 6666666 1 111 1
Q ss_pred CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC--------CCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 632 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--------PVSKDVD-LRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 632 ~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~--------~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
.+.+.++.-.++ .+|.|.+-...-..+-|+..+... ......+ ++.|++.+.| ||+..+....+.|
T Consensus 194 L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~ 268 (519)
T PF03215_consen 194 LFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWC 268 (519)
T ss_pred ccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHh
Confidence 345555542234 478888777766665555554332 1222223 6677766543 9999999999888
Q ss_pred H
Q 003620 703 I 703 (807)
Q Consensus 703 ~ 703 (807)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 8
No 381
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.7e-07 Score=97.86 Aligned_cols=96 Identities=36% Similarity=0.588 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hhhch-hHHHHHHHHHHHH----hcCCeEEEEccchhccCC
Q 003620 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~ 316 (807)
.+|||.||+|+|||.|++.||..++.+|...+|..+.. .|+|+ .+..+..+++.|. +.+-.|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999988864 57775 4556677777653 345579999999999844
Q ss_pred CCC-Cch-hH-HHHHHHHHHHHhhc
Q 003620 317 REK-THG-EV-ERRIVSQLLTLMDG 338 (807)
Q Consensus 317 ~~~-~~~-~~-~~~v~~~Ll~~ld~ 338 (807)
... ... ++ ..-+...|+.++++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 321 111 12 23355678888875
No 382
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.49 E-value=5.4e-06 Score=88.10 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=96.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC-eEE--E-Eec----hhhhhh---hhc-----hh-H---HHHHHHH-HHHHhcCC
Q 003620 244 GILLYGPPGSGKTLIARAVANETGA-FFF--C-ING----PEIMSK---LAG-----ES-E---SNLRKAF-EEAEKNAP 302 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~-~~i--~-v~~----~~l~~~---~~g-----~~-~---~~l~~vf-~~a~~~~p 302 (807)
.++|+||+|+||||+++.+++.+.. .+. . ++. .++... ..| .. . ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999998762 221 1 111 111111 011 11 1 1222222 22335667
Q ss_pred eEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-CCceEEEEEecCCCC---CC-C---HHhhccCccceEEEeC
Q 003620 303 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPN---SI-D---PALRRFGRFDREIDIG 374 (807)
Q Consensus 303 ~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~~~---~l-d---~al~r~~rf~~~i~i~ 374 (807)
.+++|||++.+.+. ....|..+.+... ....+.|+.+ ..++ .+ + ..+.+ |+...++++
T Consensus 125 ~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred eEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 89999999876321 1222222222111 1222222222 2222 11 1 12333 677788999
Q ss_pred CCChHHHHHHHHHHhcCCC-----CCCchhhhHHhhhcCCCcHHHHHHHHHHHHHHHHHh
Q 003620 375 VPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 375 ~P~~~~R~~il~~~~~~~~-----~~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
..+.++-.+++...++... ...+..++.+.+.+.|+... +..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999998888876654322 12345688889999998654 888888887766544
No 383
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.48 E-value=5.3e-07 Score=103.76 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=112.3
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc-
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 553 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~- 553 (807)
..|+++.|.....+.+.+.+...- .....+||+|++||||+++|+++...+ +.+|+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457788888877776666554211 123469999999999999999998765 46999999976532
Q ss_pred ----cccCCch--------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----
Q 003620 554 ----MWFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (807)
Q Consensus 554 ----~~vg~se--------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----- 616 (807)
..+|..+ ..-..+|+.|... .||||||+.|.. .+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 1122111 1122355555544 899999999743 34455555544311
Q ss_pred C----CCcEEEEecCCCC--CCCCccccCC---CCcc-eeEEecCCCH--HHHHHHHHHHhccC----CCCcccc-HHH-
Q 003620 617 A----KKTVFIIGATNRP--DIIDPALLRP---GRLD-QLIYIPLPDE--DSRHQIFKACLRKS----PVSKDVD-LRA- 678 (807)
Q Consensus 617 ~----~~~vivi~aTn~~--~~ld~allrp---gRfd-~~i~~~~p~~--~~r~~Il~~~~~~~----~~~~~~d-l~~- 678 (807)
+ .-++-||++||.. +.+....+|+ -|+. ..|++|+.-+ ++...+++.++++. .+.-+.+ +..
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1 1234678888764 2233322221 1443 4566665533 45555666666543 1111111 222
Q ss_pred ------HHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 679 ------LAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 679 ------la~~t~g~sgadi~~l~~~A~~~a 702 (807)
|..+.-=-+-++|++++..++..+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 333322235578888888887653
No 384
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.47 E-value=2.1e-07 Score=91.16 Aligned_cols=97 Identities=31% Similarity=0.506 Sum_probs=65.1
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc-----cccCCc-------hHHHHHHHHHHhcCCCeEEEE
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----MWFGES-------EANVREIFDKARQSAPCVLFF 580 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~-----~~vg~s-------e~~i~~~f~~a~~~~p~ilfi 580 (807)
..|||+|++||||+++|+++-..+ +.||+.|+++.+.. ..+|.. ...-..+|+.|... .|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 559999999999999999999876 46999999987632 122321 11123678888777 9999
Q ss_pred eccchhhhccCCCCCCCCchHHHHHHHHHhcccCC-----CC----CCcEEEEecCCC
Q 003620 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNR 629 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-----~~----~~~vivi~aTn~ 629 (807)
|||+.|.. .+...|+..|+.- .. .-++-||++|+.
T Consensus 100 d~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHH--------------HHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 99999843 4555666655531 11 236888888885
No 385
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.1e-06 Score=94.49 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=91.3
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCC-----------------------eEEEEeCccccccccCCchHHHHHHHHHH
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDKA 570 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~-----------------------~~i~v~~~~l~~~~vg~se~~i~~~f~~a 570 (807)
.+.++||+||.|+||+++|+++|..+-+ .|..+.... .++.+ +-..||.+-+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3456999999999999999999987522 122222110 00111 234566655544
Q ss_pred h----cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCccee
Q 003620 571 R----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 646 (807)
Q Consensus 571 ~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~ 646 (807)
. .....|++||++|.+. ....|.||+.|+. +..++++|..|+.|+.|-|.+.+ |+. .
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~ 161 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-Q 161 (319)
T ss_pred hhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-e
Confidence 3 3345799999999973 4567889999986 45567888888889999998887 886 8
Q ss_pred EEecCCCHHHHHHHHHH
Q 003620 647 IYIPLPDEDSRHQIFKA 663 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~ 663 (807)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 89999999888887764
No 386
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=6.6e-06 Score=89.60 Aligned_cols=179 Identities=25% Similarity=0.337 Sum_probs=116.3
Q ss_pred CCCCCceeeCCCCCChhHHHHHHHHHh----CC-eEEEEeCcccc----------ccc----cC-CchHHHHHHHHHHh-
Q 003620 513 SPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFISVKGPELL----------TMW----FG-ESEANVREIFDKAR- 571 (807)
Q Consensus 513 ~~~~giLl~GppGtGKT~lakalA~~~----~~-~~i~v~~~~l~----------~~~----vg-~se~~i~~~f~~a~- 571 (807)
..+.++.+.|-||||||.+..-+-... .. ..+++++..+. +.+ ++ .++......|+.-.
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 345668999999999999888554332 22 45777776542 111 11 12233334444332
Q ss_pred cC-CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccC----CCCccee
Q 003620 572 QS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR----PGRLDQL 646 (807)
Q Consensus 572 ~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allr----pgRfd~~ 646 (807)
+. .+-++++||+|.|..++.. ++-+ |-++..+ ...++++||..|..+.-|..|.| -+.-...
T Consensus 253 q~k~~~llVlDEmD~L~tr~~~-----------vLy~-lFewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~ 319 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRSQT-----------VLYT-LFEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKL 319 (529)
T ss_pred cccceEEEEechhhHHhhcccc-----------eeee-ehhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCce
Confidence 22 3679999999999854211 1111 1233333 35678999999998877755542 2345578
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCCccc--cHHHHHHHcCCCCHHhHHH---HHHHHHHHHHHH
Q 003620 647 IYIPLPDEDSRHQIFKACLRKSPVSKDV--DLRALAKYTQGFSGADITE---ICQRACKYAIRE 705 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~~~~~~~~~~~--dl~~la~~t~g~sgadi~~---l~~~A~~~a~~~ 705 (807)
+.|++++.++..+||+..+...+..... -++..|++..+.|| |++. +|+.|...|-.+
T Consensus 320 l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 320 LVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred eeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887655433 36788888899998 7775 566665555444
No 387
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.46 E-value=3.9e-07 Score=108.34 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=34.8
Q ss_pred hhhhcccCCCCC--ceeeCCCCCChhHHHHHHHHHhC--CeEEEEeCccc
Q 003620 506 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 551 (807)
Q Consensus 506 ~~~~~~~~~~~g--iLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l 551 (807)
.++++++....| +.|.||+|||||||++++++... ..-|.+++.++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 455666665555 88999999999999999998863 45566666554
No 388
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.45 E-value=1e-06 Score=102.07 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=111.1
Q ss_pred cccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccccc--
Q 003620 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 554 (807)
Q Consensus 480 ~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~-- 554 (807)
..++.|.....+.+.+.+...- .....|||+|++|||||++|+++...+ +.+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4556666666665555544211 123469999999999999999999875 468999999876321
Q ss_pred ---ccCCch-------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----C--
Q 003620 555 ---WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-- 617 (807)
Q Consensus 555 ---~vg~se-------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~-- 617 (807)
.+|... ......|..|... .||||||+.|.. .+...|+..|+.-. +
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 122110 0011235555443 899999999843 34455555544311 1
Q ss_pred --CCcEEEEecCCCCC-------CCCccccCCCCcc-eeEEecCCCH--HHHHHHHHHHhccC----C---CCc-cccHH
Q 003620 618 --KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRKS----P---VSK-DVDLR 677 (807)
Q Consensus 618 --~~~vivi~aTn~~~-------~ld~allrpgRfd-~~i~~~~p~~--~~r~~Il~~~~~~~----~---~~~-~~dl~ 677 (807)
..++-||++||+.- .+.+.|.. |+. ..|++|+..+ ++...++++++++. . +.- +.-+.
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 12567888887642 23333333 443 3355555533 34445555555332 1 111 11234
Q ss_pred HHHHHcCCCCHHhHHHHHHHHHHHHHH
Q 003620 678 ALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 678 ~la~~t~g~sgadi~~l~~~A~~~a~~ 704 (807)
.|..+.-=-+-++|++++..|+..+-.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 444443334668999999999887654
No 389
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2e-06 Score=94.06 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=98.3
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 003620 207 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (807)
Q Consensus 207 ~~~i~G-~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (807)
|+.|.| ++..++.++..+... ..+..+||+||+|+||+++|+.+|+.+.+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 556666 888888888776531 224468999999999999999999886421
Q ss_pred --------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhh
Q 003620 270 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (807)
Q Consensus 270 --------~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (807)
+..+... +. .-.-..++.+.+... ....-|++|||+|.+- ....+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1222110 00 011234555554433 2334699999998763 224467888887
Q ss_pred cccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHH
Q 003620 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 338 ~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~ 387 (807)
... ..+++|.+|+.+..+.|.+++ |. ..+++..|+.++-.++|+.
T Consensus 136 EPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 643 355666678888899999998 55 5688999988887777653
No 390
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.44 E-value=5.2e-07 Score=93.22 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=71.7
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh--------------------------------hhh-
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--------------------------------MSK- 281 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--------------------------------~~~- 281 (807)
+.+++++-+.|.||+|||||||+|++++.+... -+.+++.++ ++.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 456778889999999999999999999876411 233333211 000
Q ss_pred ----hhc------------------------------hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHH
Q 003620 282 ----LAG------------------------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 282 ----~~g------------------------------~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
+.+ ...++-+..+..|..+.|.++++||- .+.++-+
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP----------Ts~LDi~ 172 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP----------TSHLDIA 172 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC----------ccccCHH
Confidence 000 01233455677888899999999993 3333333
Q ss_pred HHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhc
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRR 363 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r 363 (807)
-.-.+++++..+....+..+|.+.|++ +-+++-
T Consensus 173 ~Q~evl~ll~~l~~~~~~tvv~vlHDl---N~A~ry 205 (258)
T COG1120 173 HQIEVLELLRDLNREKGLTVVMVLHDL---NLAARY 205 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCH---HHHHHh
Confidence 334566667666655567777777774 445543
No 391
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.44 E-value=2.2e-06 Score=103.25 Aligned_cols=196 Identities=23% Similarity=0.323 Sum_probs=110.8
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc-
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 553 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~- 553 (807)
..++++.|.....+.+.+.+.... .....+||+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 456678887777776665554211 122459999999999999999998875 46999999876532
Q ss_pred ----cccCC--------chHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----
Q 003620 554 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (807)
Q Consensus 554 ----~~vg~--------se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----- 616 (807)
..+|. ..... ..|+.|.. ..||||||+.+.. .+...|+..|+.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~~---GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELADK---SSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcCC---CeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCC
Confidence 12221 11112 23555544 4999999999743 34455555554311
Q ss_pred C----CCcEEEEecCCCCC--CCCccccCCC---Ccc-eeEEecCCCH--HHHHHHHHHHhccC----C--CC--ccccH
Q 003620 617 A----KKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRKS----P--VS--KDVDL 676 (807)
Q Consensus 617 ~----~~~vivi~aTn~~~--~ld~allrpg---Rfd-~~i~~~~p~~--~~r~~Il~~~~~~~----~--~~--~~~dl 676 (807)
. ..++-+|++|+..- .+....+|+. |+. ..|.+|+.-+ ++...+++.++++. . +. .+.-+
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 1 23567888887642 2222222210 332 2344444422 33344555554331 1 11 11224
Q ss_pred HHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 677 RALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 677 ~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
..|..+.-=-+-++|++++..|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 44544433335679999999888754
No 392
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.43 E-value=5.5e-06 Score=96.36 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=49.0
Q ss_pred ccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc--------------cc--------c------CCc
Q 003620 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------F------GES 559 (807)
Q Consensus 511 ~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~--------------~~--------v------g~s 559 (807)
|+.....++++||||+|||+++..++.+. +.+.+.++..+-.. .+ . ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666668999999999999999887653 44555544322110 00 0 001
Q ss_pred hHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 560 e~~i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23344445555566788999999988764
No 393
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=7e-07 Score=91.82 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccc
Q 003620 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFD 368 (807)
Q Consensus 289 ~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~ 368 (807)
.-|.++..|..+.|.++++|| +...++......+.+++..++.. +..|+..|++.+.+.....+.-.+.
T Consensus 145 ~QRV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln 213 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN 213 (254)
T ss_pred HHHHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence 345667788889999999999 44556666667888888888887 7788888999776654444433444
Q ss_pred eEE
Q 003620 369 REI 371 (807)
Q Consensus 369 ~~i 371 (807)
+++
T Consensus 214 ~~~ 216 (254)
T COG1121 214 RHL 216 (254)
T ss_pred Cee
Confidence 444
No 394
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=8.7e-08 Score=104.97 Aligned_cols=48 Identities=33% Similarity=0.576 Sum_probs=40.1
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~ 539 (807)
...+.||.|++..|+.+.-.... ..++||+||||||||+||+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 45789999999999999765442 3569999999999999999887654
No 395
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.39 E-value=1.4e-06 Score=102.04 Aligned_cols=53 Identities=30% Similarity=0.528 Sum_probs=44.3
Q ss_pred eeccccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC
Q 003620 473 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~ 540 (807)
..+|+..|+++.|++++++.|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456778999999999999988776542 13699999999999999999998764
No 396
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=7.8e-07 Score=96.53 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=89.2
Q ss_pred CCCCCceeeCCCCCChhHHHHHHHHHhCC-------------------------eEEEEeCccccccccC-----CchHH
Q 003620 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISVKGPELLTMWFG-----ESEAN 562 (807)
Q Consensus 513 ~~~~giLl~GppGtGKT~lakalA~~~~~-------------------------~~i~v~~~~l~~~~vg-----~se~~ 562 (807)
+.+.++||+||+|+|||++|+.+|..+.+ .|+.+....- ...-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 44567999999999999999999987532 2333432100 00001 12456
Q ss_pred HHHHHHHHhc----CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCcccc
Q 003620 563 VREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL 638 (807)
Q Consensus 563 i~~~f~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~all 638 (807)
||.+.+.+.. ....|+++|+++.+- ....+.+|..|+... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7777766653 345799999998873 345667777777654 23556668888888888887
Q ss_pred CCCCcceeEEecCCCHHHHHHHHHH
Q 003620 639 RPGRLDQLIYIPLPDEDSRHQIFKA 663 (807)
Q Consensus 639 rpgRfd~~i~~~~p~~~~r~~Il~~ 663 (807)
+ |+ ..+.|++|+.++..+.|..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 6 77 4788999999888877754
No 397
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.38 E-value=7.4e-07 Score=99.11 Aligned_cols=196 Identities=24% Similarity=0.339 Sum_probs=115.3
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccc-
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL- 552 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~- 552 (807)
..+|++|.|-.....++.+.+.. .-.....+|++|.+||||-.+|+++-+.+ +.|||.+||.-+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45788888877666655554432 11234569999999999999999999887 5699999997552
Q ss_pred ------------ccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCC-----
Q 003620 553 ------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM----- 615 (807)
Q Consensus 553 ------------~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~----- 615 (807)
+.|-|....--..+|+.|... -||+|||..+. ..+...||..|..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 123333333245688888777 79999998763 34556666655431
Q ss_pred CC----CCcEEEEecCCCC--CCCCccccCCC---CcceeEEecCCCHHHH----HHHHHHHhc----cCCCC----ccc
Q 003620 616 SA----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEDSR----HQIFKACLR----KSPVS----KDV 674 (807)
Q Consensus 616 ~~----~~~vivi~aTn~~--~~ld~allrpg---Rfd~~i~~~~p~~~~r----~~Il~~~~~----~~~~~----~~~ 674 (807)
-+ .-.|-||||||+. +.+...-.|.. |+. ++.+..|...+| ..+...++. +++-. .+.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 11 2368899999973 22222222111 222 333444443333 223333332 22211 111
Q ss_pred cHHHHHHHcCCCCHHhHHHHHHHHHHH
Q 003620 675 DLRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 675 dl~~la~~t~g~sgadi~~l~~~A~~~ 701 (807)
-+..|.++.-=-+-++|+|++..|...
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 234444433223568999999888763
No 398
>PRK09183 transposase/IS protein; Provisional
Probab=98.36 E-value=1.7e-06 Score=91.06 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=64.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCeEEEEccchhcc
Q 003620 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
+..+.+++|+||||||||+|+.+++... +..+..++..++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3457889999999999999999997663 5566777777766443221 112344555544 3456799999997653
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 003620 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 354 (807)
.+. .....|+.+++....+.. +|.|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 321 122345555554333333 34466653
No 399
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.36 E-value=1.9e-06 Score=100.01 Aligned_cols=196 Identities=18% Similarity=0.267 Sum_probs=106.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~ 553 (807)
...|+++.|.....+.+.+.+... . .....+||+|++||||+++|+++...+ ..+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 346777777766555444433210 0 113459999999999999999987665 36899999987632
Q ss_pred c-----ccCCch-------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCC-----C
Q 003620 554 M-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----S 616 (807)
Q Consensus 554 ~-----~vg~se-------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-----~ 616 (807)
. .+|... .....+|+.|... .||||||+.+.. .+...|+..+..- .
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMSP--------------RMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCCH--------------HHHHHHHHHHhcCCcccCC
Confidence 1 122111 1112345555444 899999999843 2344444444331 1
Q ss_pred C----CCcEEEEecCCCC--CC-----CCccccCCCCcc-eeEEecCCCH--HHHHHHHHHHhcc----CCCC-cccc--
Q 003620 617 A----KKTVFIIGATNRP--DI-----IDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVS-KDVD-- 675 (807)
Q Consensus 617 ~----~~~vivi~aTn~~--~~-----ld~allrpgRfd-~~i~~~~p~~--~~r~~Il~~~~~~----~~~~-~~~d-- 675 (807)
. ..++-||+||+.+ +. +.+.|.. |+. ..|.+|+..+ ++...+++.++++ .... ..+.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1 1246677777664 22 3344444 654 4455555533 3344444444432 2211 1122
Q ss_pred -HHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 676 -LRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 676 -l~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
+..|..+.---+-++|++++..|+..+
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 333333322225578888888877654
No 400
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.35 E-value=6.9e-07 Score=87.45 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=70.3
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------hhhhc-----hhHHHHHHHHHHHHhc
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKN 300 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~--------~~~~g-----~~~~~l~~vf~~a~~~ 300 (807)
++.+.++..+.|.||+|+|||||++.|++..... -+.+++.++. ....+ ...++-+..+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999876421 2344442221 11111 1233445567778888
Q ss_pred CCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 301 ~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
.|.++++||. ...++......+.+++..+..+ ...+|.+|++++.+
T Consensus 100 ~p~illlDEP----------~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEP----------TAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECC----------CcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 9999999994 3333444445566666555433 34555677776544
No 401
>PRK08181 transposase; Validated
Probab=98.34 E-value=1.6e-06 Score=91.23 Aligned_cols=101 Identities=23% Similarity=0.412 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchh-HHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
.+.+++|+||||||||+|+.+++.++ +..++.++..+++....... .......++.. ..+.+|+|||+..+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 45789999999999999999998754 56677888877766542211 11222333333 34579999999875432
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 354 (807)
. .....|+++++....+. -+|.|||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 1 12345666665443332 244466654
No 402
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.34 E-value=8.2e-06 Score=83.69 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHHHHHHHHHHHHHHHHH
Q 003620 630 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~ 708 (807)
|.-|+-.++. |+ .+|...+++.++..+||+..+....+.-+.| ++.|......-|=+---+++..|.+.|+++.
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk-- 413 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK-- 413 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc--
Confidence 3445556665 55 3677778899999999999987765543333 4444544444455555678888888888775
Q ss_pred HHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 003620 709 KDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 748 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 748 (807)
...+..+|++.+..-.
T Consensus 414 ------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 414 ------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred ------------------------CceeehhHHHHHHHHH
Confidence 2257788888887654
No 403
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.33 E-value=2.8e-06 Score=92.16 Aligned_cols=159 Identities=24% Similarity=0.401 Sum_probs=104.6
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCeEEEEeC--------
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 548 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~~i~v~~-------- 548 (807)
+..+..+.|++..|..|.-...-| .-.|+|+.|+.|+||||++++||..+.---+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 355777889998888774332211 22569999999999999999999987422111111
Q ss_pred c------------------------cccccccCCchH----------HHH---HHH-----HHHhcCCCeEEEEeccchh
Q 003620 549 P------------------------ELLTMWFGESEA----------NVR---EIF-----DKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 549 ~------------------------~l~~~~vg~se~----------~i~---~~f-----~~a~~~~p~ilfiDEid~l 586 (807)
+ .+...-.|.++. .++ ..| .+|.. .|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR---GIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR---GILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC---CEEEEeccccc
Confidence 0 011111233333 111 111 22222 49999999887
Q ss_pred hhccCCCCCCCCchHHHHHHHHHhcccC---------C--CCCCcEEEEecCCCCC-CCCccccCCCCcceeEEecCC-C
Q 003620 587 ATQRGSSVGDAGGAADRVLNQLLTEMDG---------M--SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-D 653 (807)
Q Consensus 587 ~~~r~~~~~~~~~~~~~v~~~lL~~ld~---------~--~~~~~vivi~aTn~~~-~ld~allrpgRfd~~i~~~~p-~ 653 (807)
. +.+++.||+.+.. + ...-++++|||+|.-+ .|-|.|+. ||...+.+..| +
T Consensus 157 ~--------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~ 220 (423)
T COG1239 157 D--------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLD 220 (423)
T ss_pred c--------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCC
Confidence 3 5677777776554 2 1245799999999753 67888888 99999999877 6
Q ss_pred HHHHHHHHHHHhcc
Q 003620 654 EDSRHQIFKACLRK 667 (807)
Q Consensus 654 ~~~r~~Il~~~~~~ 667 (807)
.++|.+|.+..+..
T Consensus 221 ~~~rv~Ii~r~~~f 234 (423)
T COG1239 221 LEERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHHHh
Confidence 79999999887754
No 404
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.33 E-value=6.1e-06 Score=80.90 Aligned_cols=120 Identities=28% Similarity=0.487 Sum_probs=71.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-----
Q 003620 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----- 281 (807)
Q Consensus 210 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----- 281 (807)
|.|-+..++++++.+..... .+..|||+|++||||+++|++|-+.. +.+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 34666677777666654322 24679999999999999999997754 468999999765322
Q ss_pred hhchhH-------HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----C----CceE
Q 003620 282 LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 345 (807)
Q Consensus 282 ~~g~~~-------~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~~~v 345 (807)
..|... ..-.-.|+.|.. .+||||||+.|.+. +...|+..++.-. . ..++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccc
Confidence 111100 001134555444 49999999988532 3455666665311 1 2367
Q ss_pred EEEEecCCC
Q 003620 346 IVIGATNRP 354 (807)
Q Consensus 346 iVI~atn~~ 354 (807)
-+|++|+..
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 888888863
No 405
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.7e-06 Score=78.77 Aligned_cols=98 Identities=21% Similarity=0.417 Sum_probs=60.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh--------CCeEEEEechhhhh------hh--------hc--hhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIMS------KL--------AG--ESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l--------~~~~i~v~~~~l~~------~~--------~g--~~~~~l~~vf~~a 297 (807)
...++|+||+|+|||++++.++..+ ...++.++++...+ .. .. ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999887 66777887655421 00 01 1223334444444
Q ss_pred HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEec
Q 003620 298 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (807)
Q Consensus 298 ~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~at 351 (807)
......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44545699999999874 1 345566666666 334456666654
No 406
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=4.1e-06 Score=78.45 Aligned_cols=69 Identities=32% Similarity=0.411 Sum_probs=46.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhc
Q 003620 243 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l 313 (807)
+.++|+||.||||||+++.++..+. ..++.++..+.......... +...+.+.....+.++||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999998876 66777877655432111111 222232222235679999999876
No 407
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.30 E-value=6.1e-06 Score=94.42 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=36.4
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
..|.++.|.+..++.+.-. +..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 3678888887775554322 23457899999999999999999998653
No 408
>PRK08181 transposase; Validated
Probab=98.30 E-value=7.2e-07 Score=93.94 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=49.8
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccC-CchHHHHHHHHHHhcCCCeEEEEeccchhh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~~f~~a~~~~p~ilfiDEid~l~ 587 (807)
..+++|+||||||||+||.+++.++ +...+.++.++++..+.. ........+++... .+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 3569999999999999999999765 556777788887654321 11123344555443 34699999998754
No 409
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.29 E-value=2.8e-06 Score=83.98 Aligned_cols=108 Identities=19% Similarity=0.380 Sum_probs=72.8
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh------------------------------------
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI------------------------------------ 278 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l------------------------------------ 278 (807)
+.+.+++-+.|+||+|||||||+|+|...-. .--+.+++..+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 4567888999999999999999999976421 11233333111
Q ss_pred ---------------------------hhhhhch--hHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHH
Q 003620 279 ---------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 279 ---------------------------~~~~~g~--~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
.+.|..+ ..++-|-.+..|....|.++++|| +.+.++..++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE----------PTSALDPElv 172 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE----------PTSALDPELV 172 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC----------CcccCCHHHH
Confidence 0111111 234456677888889999999999 4555667788
Q ss_pred HHHHHHhhcccCCceEEEEEecCCCC
Q 003620 330 SQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 330 ~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
...+..|..+...+ ...+..||...
T Consensus 173 ~EVL~vm~~LA~eG-mTMivVTHEM~ 197 (240)
T COG1126 173 GEVLDVMKDLAEEG-MTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHHcC-CeEEEEechhH
Confidence 88888888877654 55556677653
No 410
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.29 E-value=9.7e-07 Score=91.60 Aligned_cols=121 Identities=18% Similarity=0.292 Sum_probs=73.7
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccC---CchHHHHHHHHHHhcCCCeEEEEeccchhhhc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~ 589 (807)
.+++|+||||||||+|+.++|.++ +..++.++.++++....+ ........+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 567778888887653322 11122334555543 356999999988531
Q ss_pred cCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCC-C----CCCccccCCCCcc----eeEEecCCC
Q 003620 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-D----IIDPALLRPGRLD----QLIYIPLPD 653 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~-~----~ld~allrpgRfd----~~i~~~~p~ 653 (807)
......++.+++..-- ..+.-+|.|||.. + .++..++. |+- ..|.|.+++
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~~~~l~~~~g~ri~s--Rl~~~~~~~i~f~~~s 235 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSNMEEMTKLLGERVMD--RMRLGNSLWVIFNWDS 235 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCCHHHHHHHhChHHHH--HHHHCCceEEEeeCCc
Confidence 1234445555554311 1123456677753 2 24444444 551 355666554
No 411
>PRK06526 transposase; Provisional
Probab=98.27 E-value=2e-06 Score=90.03 Aligned_cols=101 Identities=21% Similarity=0.400 Sum_probs=58.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCeEEEEccchhccCC
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~ 316 (807)
.+.+++|+||||||||+|+.+|+.++ +..+..++..+++...... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 46789999999999999999998765 4555556666655443211 011122222222 34679999999876422
Q ss_pred CCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCC
Q 003620 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~ 354 (807)
. .....|..+++....+.. +|.+||.+
T Consensus 175 ~---------~~~~~L~~li~~r~~~~s--~IitSn~~ 201 (254)
T PRK06526 175 P---------EAANLFFQLVSSRYERAS--LIVTSNKP 201 (254)
T ss_pred H---------HHHHHHHHHHHHHHhcCC--EEEEcCCC
Confidence 1 122345555544333322 44566654
No 412
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.27 E-value=1.8e-06 Score=87.03 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
++.+..+..++|+||+||||||+.+.|...+.
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 45678888999999999999999999987653
No 413
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.27 E-value=1.5e-06 Score=93.84 Aligned_cols=110 Identities=20% Similarity=0.332 Sum_probs=75.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS--------------------------------- 280 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~--------------------------------- 280 (807)
++.+.+++.+.|.||+||||||++|+||+.-... -+.+++.++.+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 4456788889999999999999999999864210 12222211100
Q ss_pred ---------------------------hhhc--hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHH
Q 003620 281 ---------------------------KLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 281 ---------------------------~~~g--~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
.+.. ...++-|-.+..|....|.+|++|| +-+.++..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 0000 0123345567777888999999999 556677778888
Q ss_pred HHHHhhcccCCceEEEEEecCCCC
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
+...+..+.....+.+|-.||+.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 888888877777888888888854
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.27 E-value=1.6e-06 Score=85.74 Aligned_cols=111 Identities=15% Similarity=0.060 Sum_probs=67.5
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh--hhhhh-chhHHHHHHHHHHHHhcCCeEEEEccch
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEID 311 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--~~~~~-g~~~~~l~~vf~~a~~~~p~Il~iDEid 311 (807)
+.+.+++.+.|.||+|+|||||++.|++..... -+.+++..+ ..... -...++-+..+..+....|.++++||.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP- 98 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP- 98 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC-
Confidence 355788999999999999999999999976321 133333211 00100 112334455667777788999999994
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 312 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
...++......+..++..+..+....+|.+||+++.+
T Consensus 99 ---------ts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 99 ---------SAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 3333444445555555554433324556677776443
No 415
>PF13173 AAA_14: AAA domain
Probab=98.27 E-value=3e-06 Score=79.39 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhC--CeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhhccCCC
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~--~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
+.++|+||.||||||+++.++.... .+++.++..+.......... +...|.+.....+.++|||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 67788877665432111101 22333322222567999999998721
Q ss_pred CCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCC-Cc-cccCCCCcceeEEecCCCHHH
Q 003620 594 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII-DP-ALLRPGRLDQLIYIPLPDEDS 656 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~l-d~-allrpgRfd~~i~~~~p~~~~ 656 (807)
....+..+...- .+.-+|+..++..... +- ..+ +||.. .+.+.+.+..|
T Consensus 76 -------~~~~lk~l~d~~-----~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVDNG-----PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHHhc-----cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 234444444321 1122333333333222 11 223 37876 67777776654
No 416
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.27 E-value=1.2e-05 Score=87.31 Aligned_cols=160 Identities=24% Similarity=0.392 Sum_probs=99.7
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEec--------
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING-------- 275 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~-------- 275 (807)
.+.|.-++|.+..+..|--- --. ..-.++||-|+.|+||||++|+|+..++-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~----av~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN----AVD---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhh----hcc---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45677799998876655211 111 223579999999999999999999998644333332
Q ss_pred -----hh-------------------hhhhhhchhHHH-H-----HHHHH-HHH--------hcCCeEEEEccchhccCC
Q 003620 276 -----PE-------------------IMSKLAGESESN-L-----RKAFE-EAE--------KNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 276 -----~~-------------------l~~~~~g~~~~~-l-----~~vf~-~a~--------~~~p~Il~iDEid~l~~~ 316 (807)
.. +.+.-.+.++.+ + ..+++ ..+ .....|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 10 111111223331 1 11111 111 1123699999987553
Q ss_pred CCCCchhHHHHHHHHHHHHhhc-----------ccCCceEEEEEecCCCC-CCCHHhhccCccceEEEeCCC-ChHHHHH
Q 003620 317 REKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 383 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~viVI~atn~~~-~ld~al~r~~rf~~~i~i~~P-~~~~R~~ 383 (807)
.+++..|++.+.. +....++++|||+|..+ .|-|.|+. ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4577778777653 12235789999999753 67777776 89988887666 5678888
Q ss_pred HHHHHh
Q 003620 384 VLRIHT 389 (807)
Q Consensus 384 il~~~~ 389 (807)
|.+...
T Consensus 227 Ii~r~~ 232 (423)
T COG1239 227 IIRRRL 232 (423)
T ss_pred HHHHHH
Confidence 886543
No 417
>PRK09183 transposase/IS protein; Provisional
Probab=98.25 E-value=1.1e-06 Score=92.45 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=49.2
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccC-CchHHHHHHHHHHhcCCCeEEEEeccchh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~~f~~a~~~~p~ilfiDEid~l 586 (807)
..+++|+||||||||+|+.+++... +.....++.+++...+.. .....+..+|+... ..+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 4569999999999999999998764 455666677776543321 11123456666542 45679999999775
No 418
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.25 E-value=6.7e-06 Score=86.23 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhc
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~Il~iDEid~l 313 (807)
.+.+++|+||||+|||+|+-+|++++ |..++.+..++++......... ....-+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999999886 6778888888887654432221 111111221 123469999998654
No 419
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.25 E-value=1.2e-05 Score=78.45 Aligned_cols=132 Identities=25% Similarity=0.368 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------------------
Q 003620 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 268 (807)
Q Consensus 212 G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----------------------- 268 (807)
|.+..++.|...+..- .-+..+||+||+|+||+++|+++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6677777777776541 23456999999999999999999987632
Q ss_pred eEEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCce
Q 003620 269 FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (807)
Q Consensus 269 ~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (807)
.++.++...... .-.-+.++.+..... ....-|++|||+|.+. ....+.|+..|+.... +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp~--~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPPE--N 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTTT--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCCC--C
Confidence 133333221100 112355666655432 2345699999999774 3355778888887543 6
Q ss_pred EEEEEecCCCCCCCHHhhccCccceEEEeC
Q 003620 345 VIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 345 viVI~atn~~~~ld~al~r~~rf~~~i~i~ 374 (807)
+.+|.+|+.++.+-+.+++ |. ..+.++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 7777788999999999998 65 334444
No 420
>PRK12377 putative replication protein; Provisional
Probab=98.25 E-value=6.9e-06 Score=85.51 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhH--HHHHHHHHHHHhcCCeEEEEccchhc
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~Il~iDEid~l 313 (807)
..+++|+||||||||+|+.+|++.+ +..++.++..++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 3689999999999999999999887 455677777777654322110 0111233332 35679999998654
No 421
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.24 E-value=4.7e-06 Score=78.01 Aligned_cols=98 Identities=24% Similarity=0.387 Sum_probs=62.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh--------CCeEEEEeCccccc--------------cccC-Cc-hHHHHHHHHHHh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT--------------MWFG-ES-EANVREIFDKAR 571 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~--------~~~~i~v~~~~l~~--------------~~vg-~s-e~~i~~~f~~a~ 571 (807)
+.++++||||+|||++++.++... ..+++.++.+...+ ...+ .+ ......+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 66777777654321 0011 12 233344445555
Q ss_pred cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCC
Q 003620 572 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (807)
Q Consensus 572 ~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn 628 (807)
.....+|+|||+|.+. . ...++.+...++ ...-.++++|+.+
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5555699999999974 1 455666655555 3445677777664
No 422
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.24 E-value=1.3e-05 Score=82.63 Aligned_cols=180 Identities=29% Similarity=0.425 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEEec---h--hhhhhh-
Q 003620 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCING---P--EIMSKL- 282 (807)
Q Consensus 212 G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~---~--~l~~~~- 282 (807)
|=++.+++|.+.+.. .+...++|+||.|+|||+|++.+...+... .+.+.. . ......
T Consensus 3 gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 3 GREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 445666666555432 235679999999999999999999987321 111111 0 000000
Q ss_pred -----------------------------hchhHHHHHHHHHHHHhcC-CeEEEEccchhcc-CCCCCCchhHHHHHHHH
Q 003620 283 -----------------------------AGESESNLRKAFEEAEKNA-PSIIFIDEIDSIA-PKREKTHGEVERRIVSQ 331 (807)
Q Consensus 283 -----------------------------~g~~~~~l~~vf~~a~~~~-p~Il~iDEid~l~-~~~~~~~~~~~~~v~~~ 331 (807)
.......+..+++...... ..+|+|||++.+. ... -...+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 0112344566666655443 4899999999987 211 11345566
Q ss_pred HHHHhhcccCCceEEEEEecCCCCCC----CHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCC-C-CCchhhhHHhh
Q 003620 332 LLTLMDGLKSRAHVIVIGATNRPNSI----DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIAK 405 (807)
Q Consensus 332 Ll~~ld~~~~~~~viVI~atn~~~~l----d~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~-~-~~~~~l~~la~ 405 (807)
|.+.++......++.+|.+....... +..-.-.+|+.. +.+++.+.++..+++....+... + .++.+++.+..
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYS 222 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 77777664444444444333321100 000111346766 99999999999999988765541 1 24556777777
Q ss_pred hcCCCc
Q 003620 406 DTHGYV 411 (807)
Q Consensus 406 ~t~g~~ 411 (807)
.+.|+-
T Consensus 223 ~~gG~P 228 (234)
T PF01637_consen 223 LTGGNP 228 (234)
T ss_dssp HHTT-H
T ss_pred HhCCCH
Confidence 777753
No 423
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.24 E-value=3.2e-06 Score=97.80 Aligned_cols=132 Identities=19% Similarity=0.215 Sum_probs=81.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE----echhhhhhh-----hchhHHHHHHHHHHHHhcCCeEEEEccch
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDEID 311 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v----~~~~l~~~~-----~g~~~~~l~~vf~~a~~~~p~Il~iDEid 311 (807)
...+|||+|+||||||++++++++..+...+.. ++..+.... .|+..-.-. .+. .....+++|||++
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~---~A~~Gil~iDEi~ 310 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALV---LADNGVCCIDEFD 310 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEE---ecCCCEEEEechh
Confidence 345799999999999999999999876432221 111121100 011000000 011 1224699999999
Q ss_pred hccCCCCCCchhHHHHHHHHHHHHhhccc-----------CCceEEEEEecCCCC-------------CCCHHhhccCcc
Q 003620 312 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRF 367 (807)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~-------------~ld~al~r~~rf 367 (807)
.+.+. ....|++.|+.-. -..++.||+++|+.. .+++++.+ ||
T Consensus 311 ~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RF 377 (509)
T smart00350 311 KMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RF 377 (509)
T ss_pred hCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ce
Confidence 87432 3355666664321 124678999999753 57888887 99
Q ss_pred ceEE-EeCCCChHHHHHHHHHHh
Q 003620 368 DREI-DIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 368 ~~~i-~i~~P~~~~R~~il~~~~ 389 (807)
|..+ ....|+.+.+.+|.+..+
T Consensus 378 dLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eeEEEecCCCChHHHHHHHHHHH
Confidence 8754 457888888888886543
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.24 E-value=5.5e-06 Score=83.99 Aligned_cols=68 Identities=29% Similarity=0.465 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccc
Q 003620 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFD 368 (807)
Q Consensus 289 ~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~ 368 (807)
+-|-.+..|....|.+|+.|| +.+..+..-...++.++..+....+..||.+||++. +.. +.+
T Consensus 148 qQRVAIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-----lA~--~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE-----LAK--YAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-----HHH--hCC
Confidence 345567777788999999999 555555555666777777765555556667788753 333 455
Q ss_pred eEEEe
Q 003620 369 REIDI 373 (807)
Q Consensus 369 ~~i~i 373 (807)
+.|.+
T Consensus 211 r~i~l 215 (226)
T COG1136 211 RVIEL 215 (226)
T ss_pred EEEEE
Confidence 55554
No 425
>PRK06921 hypothetical protein; Provisional
Probab=98.24 E-value=5.4e-06 Score=87.58 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchh
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~ 312 (807)
...+++|+||||+|||+|+.+||+++ +..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999876 45566777666554332211 1112222222 3457999999954
No 426
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.23 E-value=4.7e-06 Score=78.80 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
++.+.++..++|.||+|||||||.+++|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 45678999999999999999999999998763
No 427
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.22 E-value=1.3e-06 Score=94.68 Aligned_cols=69 Identities=29% Similarity=0.495 Sum_probs=48.1
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccC---CchHHHHHHHHHHhcCCCeEEEEeccchh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~~f~~a~~~~p~ilfiDEid~l 586 (807)
.+++|+||+|||||+|+.++|.++ +..++.++.++++..... .........++.... ..+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence 679999999999999999999986 567888888887654311 011111222444333 359999999775
No 428
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.1e-05 Score=87.81 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------------------------EEEEechhhh---------------
Q 003620 240 KPPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFCINGPEIM--------------- 279 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~-------------------------~i~v~~~~l~--------------- 279 (807)
..+..+||+||+|+||+++|+.+|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345689999999999999999999877432 1112111000
Q ss_pred ---hh----h-hchhHHHHHHHHHHHH----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEE
Q 003620 280 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 280 ---~~----~-~g~~~~~l~~vf~~a~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viV 347 (807)
++ . ..-.-..++.+.+... ...--|++||++|.+.. ...+.|++.+++- ..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEP--PPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCC--CcCcEE
Confidence 00 0 0012245565555432 22345999999998742 3457788888863 457888
Q ss_pred EEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHH
Q 003620 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (807)
Q Consensus 348 I~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~ 388 (807)
|.+|++++.+.|.+++ |. ..+.+++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999998 76 67899999999888888653
No 429
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.21 E-value=2e-06 Score=85.30 Aligned_cols=101 Identities=22% Similarity=0.437 Sum_probs=59.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchh-HHHHHHHHHHHHhcCCeEEEEccchhccC
Q 003620 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~Il~iDEid~l~~ 315 (807)
..+.+++|+||+|||||+||.+++.++ +..+..++..+++....... .......++... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 356799999999999999999998765 67778888888876543211 112223344333 34699999985321
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCC
Q 003620 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~ 353 (807)
........|..+++.-..+.+ ++ .|||.
T Consensus 122 --------~~~~~~~~l~~ii~~R~~~~~-tI-iTSN~ 149 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYERKP-TI-ITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E-EE-EEESS
T ss_pred --------ecccccccchhhhhHhhcccC-eE-eeCCC
Confidence 112233456666665444333 33 36764
No 430
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.21 E-value=3.1e-06 Score=90.94 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=73.2
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh----------------------------------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------------- 279 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------------------------------- 279 (807)
++.+..++.+.|.||+||||||++|.||+..... -+.+++.++.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 3456788899999999999999999999875311 1222221110
Q ss_pred -------------------------hhhhc--hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 280 -------------------------SKLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 280 -------------------------~~~~g--~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
+.... ...++-|-.+..|.-..|.++++|| +-+.++.++..++
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 00000 0112224455566677899999999 6666777777778
Q ss_pred HHHhhcccCCceEEEEEecCCCC
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~ 355 (807)
...+..+..+.+..+|-.||+..
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCHH
Confidence 77777777777778888888753
No 431
>PRK06526 transposase; Provisional
Probab=98.21 E-value=9.9e-07 Score=92.38 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=45.1
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCC-chHHHHHHHHHHhcCCCeEEEEeccchhh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~~f~~a~~~~p~ilfiDEid~l~ 587 (807)
..+++|+||||||||+||.+++.++ +.....++.++++...... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4579999999999999999999875 4444555555554332110 111222233332 235799999998864
No 432
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=3.8e-06 Score=87.14 Aligned_cols=111 Identities=22% Similarity=0.381 Sum_probs=75.2
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEech---hh--------------------------------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGP---EI-------------------------------- 278 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~---~l-------------------------------- 278 (807)
++.+..++-+.|.||+|+|||||+|+||+..... .+.+++. +.
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFG 101 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG 101 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhc
Confidence 3456788899999999999999999999875311 1222222 00
Q ss_pred -----------------------------hhhhhc--hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHH
Q 003620 279 -----------------------------MSKLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 279 -----------------------------~~~~~g--~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
-+.|.. ...++-+-.+..|..-.|.+|++|| +.+.++..
T Consensus 102 l~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE----------Pf~ALDa~ 171 (345)
T COG1118 102 LKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE----------PFGALDAK 171 (345)
T ss_pred ccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC----------CchhhhHH
Confidence 000000 0122334456667778899999999 66667777
Q ss_pred HHHHHHHHhhcccCCceEEEEEecCCCCC
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 356 (807)
+...|..+|..+..+.++.++..|++.++
T Consensus 172 vr~~lr~wLr~~~~~~~~ttvfVTHD~ee 200 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEE 200 (345)
T ss_pred HHHHHHHHHHHHHHhhCceEEEEeCCHHH
Confidence 77778888877777778888888988643
No 433
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.20 E-value=1e-05 Score=84.19 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=98.0
Q ss_pred cccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhCCe------EEEEeCccc
Q 003620 478 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPEL 551 (807)
Q Consensus 478 ~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~~~------~i~v~~~~l 551 (807)
-..+++.+.+++...+.+.... ..-.++|+|||||+|||+..-+.|..+..+ ....+.++=
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 4456666666666666554322 112279999999999999999999987553 112222221
Q ss_pred cccccCCchHHHHHHHHHHhc-------CCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEE
Q 003620 552 LTMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 552 ~~~~vg~se~~i~~~f~~a~~-------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi 624 (807)
.+ ++ ..+.--..|..+++ ..+..+++||+|+.... ++.+.+| ....+.. ++-++
T Consensus 105 rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-------AQnALRR-------viek~t~--n~rF~ 165 (360)
T KOG0990|consen 105 RG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-------AQNALRR-------VIEKYTA--NTRFA 165 (360)
T ss_pred cC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-------HHHHHHH-------HHHHhcc--ceEEE
Confidence 11 11 12334456766663 37889999999997542 2223333 3333333 33444
Q ss_pred ecCCCCCCCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCC
Q 003620 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS 671 (807)
Q Consensus 625 ~aTn~~~~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~ 671 (807)
.-.|.|..+-|++.. ||. .+.|.+.+..+-...+.++....+..
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 566999999999987 776 45566677777777777777655443
No 434
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.20 E-value=2.2e-06 Score=85.38 Aligned_cols=112 Identities=18% Similarity=0.269 Sum_probs=68.0
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------h-------------------hhhc--
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------S-------------------KLAG-- 284 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~--------~-------------------~~~g-- 284 (807)
++.+.++..++|.||+|+|||||++.|++..... -+.+++.++. . ....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3456788999999999999999999999976321 2333332210 0 0000
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 285 ~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
...++-+..+..+....|.++++||.. ..++......+.+.+..+..+.+..+|.+|++++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~----------~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPT----------SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 012233445666777889999999943 333344445566666555443234556677876544
No 435
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=5.9e-05 Score=81.56 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=88.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (807)
+..+||+||+|+||+++|+.+|+.+.+. ++.+...+ ++ .-.-..+|.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHH
Confidence 4479999999999999999999876431 22222100 01 11234566654443
Q ss_pred H----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
. ....-|++||++|.+-. ...+.|++.+++- ..++++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 3 23446999999998742 3447788888874 3467888889999999999998 65 45789
Q ss_pred CCCChHHHHHHHHHH
Q 003620 374 GVPDEVGRLEVLRIH 388 (807)
Q Consensus 374 ~~P~~~~R~~il~~~ 388 (807)
.+|..++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888887777654
No 436
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.20 E-value=1.4e-05 Score=87.37 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=88.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q 003620 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 281 (807)
Q Consensus 207 ~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~-- 281 (807)
++++.|.+..++++++.+.... ..+..|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4567888888888877765422 235679999999999999999997554 468999999875321
Q ss_pred ---hhchhH-------HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--C-------C
Q 003620 282 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 342 (807)
Q Consensus 282 ---~~g~~~-------~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 342 (807)
..|... ......|+. .....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 000112222 23468999999987532 3355666664321 0 1
Q ss_pred ceEEEEEecCCC-------CCCCHHhhccCccceEEEeCCCChHHHHH
Q 003620 343 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 343 ~~viVI~atn~~-------~~ld~al~r~~rf~~~i~i~~P~~~~R~~ 383 (807)
..+-+|++|+.. ..+.+.|.. ||. .+.+.+|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246777777653 233444443 553 23455566666644
No 437
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.18 E-value=4.4e-06 Score=93.16 Aligned_cols=200 Identities=24% Similarity=0.346 Sum_probs=116.6
Q ss_pred ccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHhC---CeEEEEeCccccc--
Q 003620 479 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLT-- 553 (807)
Q Consensus 479 ~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~~---~~~i~v~~~~l~~-- 553 (807)
.+.++.|.....+++.+.+...- .....||++|++||||-++|++|-..+. .|||.+||..+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45567777777777666554211 1234599999999999999999998874 5999999976531
Q ss_pred ---cccCCch-------HHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccC-----CCC-
Q 003620 554 ---MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MSA- 617 (807)
Q Consensus 554 ---~~vg~se-------~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~-----~~~- 617 (807)
..+|... ..-.-.|+.|... .||+|||..+. ..++..||..|.. +.+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCCC
Confidence 1222111 1122367777766 99999998863 3455566655543 211
Q ss_pred ---CCcEEEEecCCCC--CCCCccccCCC---CcceeEEecCCCHHHH----HHHHHHHhcc----CCC-CccccHHHHH
Q 003620 618 ---KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEDSR----HQIFKACLRK----SPV-SKDVDLRALA 680 (807)
Q Consensus 618 ---~~~vivi~aTn~~--~~ld~allrpg---Rfd~~i~~~~p~~~~r----~~Il~~~~~~----~~~-~~~~dl~~la 680 (807)
.-+|=||+|||+. +.+.....|.. |+. ++.+..|...+| --++++++++ .+. ...++-+.+.
T Consensus 271 ~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 271 KPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 2267799999973 22222222211 333 455555554444 3455555543 211 1223333333
Q ss_pred HH-cCCC--CHHhHHHHHHHHHHHHHHHHH
Q 003620 681 KY-TQGF--SGADITEICQRACKYAIRENI 707 (807)
Q Consensus 681 ~~-t~g~--sgadi~~l~~~A~~~a~~~~~ 707 (807)
.. +..| +-++|+|++..|+..+-.+.+
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcCCcccc
Confidence 32 2233 457888999888877655433
No 438
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.18 E-value=1.8e-06 Score=92.83 Aligned_cols=70 Identities=31% Similarity=0.478 Sum_probs=48.5
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCC-chHHHHHHHHHHhcCCCeEEEEeccchh
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~~f~~a~~~~p~ilfiDEid~l 586 (807)
.+|++|+||+|||||+|+.|+|.++ +.....+..++++...-.. ........++.... ..+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCc
Confidence 4789999999999999999999987 5566777777765433111 01123344444443 359999999763
No 439
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.17 E-value=1.1e-05 Score=87.54 Aligned_cols=105 Identities=19% Similarity=0.354 Sum_probs=63.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhch---hHHHHHHHHHHHHhcCCeEEEEccchhccC
Q 003620 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~Il~iDEid~l~~ 315 (807)
..+++|+||+|||||+|+.+||.++ +..++.++..+++...... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 5677888888876544221 001111112322 2346999999865432
Q ss_pred CCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+ ......|..+++.......-++|.+...+..+
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 1 12335666777655433333444443344444
No 440
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.17 E-value=4.8e-05 Score=88.33 Aligned_cols=150 Identities=25% Similarity=0.366 Sum_probs=91.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhh
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 282 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~ 282 (807)
.+.++.|....++++.+.+..-- ..+..|||+|++||||+++|++|-... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 56678999998888877775421 235689999999999999999998764 4689999997763211
Q ss_pred -----hchhHH----HH---HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc---------C
Q 003620 283 -----AGESES----NL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 341 (807)
Q Consensus 283 -----~g~~~~----~l---~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 341 (807)
.|.... .. ...|+.+ ....||||||+.|... +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 110000 00 0123332 3468999999988532 3345666654321 1
Q ss_pred CceEEEEEecCCCC-------CCCHHhhccCccceEEEeCCCChHHHHH
Q 003620 342 RAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 342 ~~~viVI~atn~~~-------~ld~al~r~~rf~~~i~i~~P~~~~R~~ 383 (807)
...+-+|++|+..- .+.+.|-. |+. .+.+.+|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 13567888887641 12233322 332 34566666666654
No 441
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.17 E-value=8.7e-06 Score=95.55 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=85.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhhhchhH--HHHH---HHHHH--HHhcCCeEEEEccchhc
Q 003620 243 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESE--SNLR---KAFEE--AEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~~~~g~~~--~~l~---~vf~~--a~~~~p~Il~iDEid~l 313 (807)
.+|||.|+||||||+++++++..++. +|+.+..........|... ..+. ..|+. .......+||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 46999999999999999999998764 4777765322233333220 0000 00000 00112259999999877
Q ss_pred cCCCCCCchhHHHHHHHHHHHHhhccc-----------CCceEEEEEecCCCC---CCCHHhhccCccceEEEeC-CCCh
Q 003620 314 APKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG-VPDE 378 (807)
Q Consensus 314 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~---~ld~al~r~~rf~~~i~i~-~P~~ 378 (807)
.+ .+...|+..|+.-. ....+.||+++|..+ .+.+++.. ||...+.+. +|..
T Consensus 97 ~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred CH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 43 35566777775321 113578888888764 67888887 888877665 4566
Q ss_pred HHHHHHHHHHh
Q 003620 379 VGRLEVLRIHT 389 (807)
Q Consensus 379 ~~R~~il~~~~ 389 (807)
.+|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888886544
No 442
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.16 E-value=5.5e-06 Score=86.01 Aligned_cols=69 Identities=28% Similarity=0.460 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchh---HHHHHHHHHHHHhcCCeEEEEccchhc
Q 003620 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~Il~iDEid~l 313 (807)
.+++|+|+||||||+|+.+|+..+ +..++.++..++........ ......+++... .+.+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 489999999999999999999987 56778888888765443221 112233444432 4679999999765
No 443
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.16 E-value=6e-06 Score=83.29 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=74.6
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh----------------------------------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------------- 279 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------------------------------- 279 (807)
++.+.+++.+.|+|++|||||||+|++++..... -+.++|..+.
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 3467889999999999999999999999864311 1222221100
Q ss_pred -----------------------------hhhhc--hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHH
Q 003620 280 -----------------------------SKLAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI 328 (807)
Q Consensus 280 -----------------------------~~~~g--~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v 328 (807)
..+.. ...+.-|-.+..|..-.|.+|++|| +.+.++..+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDE----------ptSaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDE----------PTSALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecC----------chhhhcHHH
Confidence 00000 0122334456677778899999999 445556677
Q ss_pred HHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 329 VSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 329 ~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
.+++++++..++...+..++..||+...+
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v 205 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLALV 205 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHHH
Confidence 78888888888877777777778875433
No 444
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.16 E-value=3.4e-07 Score=94.28 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=31.9
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEech
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGP 276 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~ 276 (807)
++.+.+++.++|+|++|||||||++.+++.+... .+.+++.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~ 66 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL 66 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCe
Confidence 4567888999999999999999999999876432 2344443
No 445
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=6.5e-06 Score=81.24 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=68.4
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------hhh------------------chhHH
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLA------------------GESES 288 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~~~------------------g~~~~ 288 (807)
++.+.++..+.|.||+|+|||||++.|++.+... -+.+++..+.. ... -...+
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHH
Confidence 3456789999999999999999999999986421 12333322100 000 00122
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 289 ~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
+-+..+..+....|.++++||- ...++......+.+++..+.. ...+|.+||+++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP----------~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 158 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEA----------TSALDPETEALILEALRALAK--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECC----------CcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHH
Confidence 3344566777788999999994 333444445566666665543 25666678887654
No 446
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.15 E-value=5.5e-06 Score=90.79 Aligned_cols=126 Identities=25% Similarity=0.367 Sum_probs=83.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHH----hCCeEEEEechhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 278 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~----l~~~~i~v~~~~l 278 (807)
....++++.|-+...+++++.+.. ++ ..+.+|||+|++||||+.+|++|-.. ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~a--------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---YA--------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---hC--------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 445678899999998888887765 11 34678999999999999999998533 3678999999887
Q ss_pred hhhhhchh------------HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcc-----cC
Q 003620 279 MSKLAGES------------ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----KS 341 (807)
Q Consensus 279 ~~~~~g~~------------~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~~ 341 (807)
........ ...-.-+|+.|. -.+||+|||+.+.+. ....|+..++.- ..
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 54322100 001112233332 258999999988643 335677777651 11
Q ss_pred ----CceEEEEEecCC
Q 003620 342 ----RAHVIVIGATNR 353 (807)
Q Consensus 342 ----~~~viVI~atn~ 353 (807)
...|.+|++|+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 235778877774
No 447
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.14 E-value=2e-06 Score=81.75 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=43.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCC---eEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccchhhh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~---~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~l~~ 588 (807)
..++|+|++||||+++|+++...... +|+.+++..+. .++++.+ ....+||+|||.+..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP 83 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH
Confidence 45999999999999999999988753 56666555431 4466666 334999999999843
No 448
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=2.8e-06 Score=87.75 Aligned_cols=161 Identities=20% Similarity=0.370 Sum_probs=88.4
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHhCC-eE--EEEeC-ccc---------------------cc-c------------cc
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKG-PEL---------------------LT-M------------WF 556 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~~~-~~--i~v~~-~~l---------------------~~-~------------~v 556 (807)
...++++||.|+|||+|++.+...... ++ +.+.. ... .. . ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 456999999999999999999998732 11 11111 000 00 0 00
Q ss_pred CCchHHHHHHHHHHhcCC-CeEEEEeccchhh-hccCCCCCCCCchHHHHHHHHHhcccCCCCCCc-EEEEecCCC--C-
Q 003620 557 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNR--P- 630 (807)
Q Consensus 557 g~se~~i~~~f~~a~~~~-p~ilfiDEid~l~-~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~-vivi~aTn~--~- 630 (807)
......+..+++...... ..||+|||++.+. ..+ .....+..|.+.++......+ .+|+++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112345666666655543 3899999999997 221 124566666666665433333 344444442 1
Q ss_pred C--CCCccccCCCCcceeEEecCCCHHHHHHHHHHHhccC-CC-CccccHHHHHHHcCCCC
Q 003620 631 D--IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-PV-SKDVDLRALAKYTQGFS 687 (807)
Q Consensus 631 ~--~ld~allrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~-~~-~~~~dl~~la~~t~g~s 687 (807)
+ .-++.+. +|+.. +++++.+.++..++++..++.. .+ ..+.+++.+...+.|+-
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 1 1123333 48887 9999999999999999987766 11 24567888888888754
No 449
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.13 E-value=2.1e-06 Score=68.71 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=32.9
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003620 733 VSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 768 (807)
Q Consensus 733 ~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 768 (807)
.+.|+++||+.||+.++||||+++|++|++|.++|+
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999999999985
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.13 E-value=6e-06 Score=79.04 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=64.9
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechh---hhhhhhchhHHHHHHHHHHHHhcCCeEEEEccc
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPE---IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEI 310 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~---l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEi 310 (807)
++.+.+++.+.|.||+|+|||||+++|++..... -+.+++.. +...+. ..++-+..+..+....|.++++||.
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3456788999999999999999999999976421 12223210 001111 1233444567777788999999994
Q ss_pred hhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 311 DSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 311 d~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
. ..++......+.+.+..+. ..++.+|++++.+
T Consensus 98 ~----------~~LD~~~~~~l~~~l~~~~----~til~~th~~~~~ 130 (144)
T cd03221 98 T----------NHLDLESIEALEEALKEYP----GTVILVSHDRYFL 130 (144)
T ss_pred c----------cCCCHHHHHHHHHHHHHcC----CEEEEEECCHHHH
Confidence 3 2333334445555555442 2555577775443
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.13 E-value=9e-06 Score=78.83 Aligned_cols=110 Identities=25% Similarity=0.364 Sum_probs=60.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhh----------------------h--chhHHHHHHHHHHH
Q 003620 245 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----------------------A--GESESNLRKAFEEA 297 (807)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~----------------------~--g~~~~~l~~vf~~a 297 (807)
++|+||||+|||++++.++... +..++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 4555555543221100 0 00111222334556
Q ss_pred HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC
Q 003620 298 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 298 ~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
....|.+++|||+..+.+......+.....+...+..++...+ +.++.+|.+++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCceEEEEEecCC
Confidence 6678899999999988654221000111222233333333332 23556666666543
No 452
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=5.9e-05 Score=83.79 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=94.4
Q ss_pred CceeeCCCCCChhHHHHHHHHHhCCeEEEEeCcccc-------ccccCCchH---HHH---HHHHHH------------h
Q 003620 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA---NVR---EIFDKA------------R 571 (807)
Q Consensus 517 giLl~GppGtGKT~lakalA~~~~~~~i~v~~~~l~-------~~~vg~se~---~i~---~~f~~a------------~ 571 (807)
-+||.||+||||||.++.|+.+++..++....+-.. +.-.+.... .+. .....+ .
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 388999999999999999999999888887643221 100011100 111 011112 1
Q ss_pred cCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCC------CCcce
Q 003620 572 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRP------GRLDQ 645 (807)
Q Consensus 572 ~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrp------gRfd~ 645 (807)
...+.+||+||+=..+... ..+.+..+|.++-......-|++|.-.+.++..++-.++| -|++
T Consensus 192 ~~~~~liLveDLPn~~~~d----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~- 260 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYRD----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS- 260 (634)
T ss_pred ccCceEEEeeccchhhhhh----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-
Confidence 2346799999987765431 1233334444333222222333333334445554443332 1554
Q ss_pred eEEecCCCHHHHHHHHHHHhccCC--CC-----ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 646 LIYIPLPDEDSRHQIFKACLRKSP--VS-----KDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~~~~~~--~~-----~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
.|.|.+-...-..+.|+..++... +. ....++.++..+ |+||+..+....+.+.
T Consensus 261 ~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s----~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 261 NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGS----GGDIRSAINSLQLSSS 321 (634)
T ss_pred eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhc----CccHHHHHhHhhhhcc
Confidence 677777777777777776665432 22 122344444333 3499999998888753
No 453
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.13 E-value=1.1e-06 Score=87.08 Aligned_cols=69 Identities=32% Similarity=0.562 Sum_probs=45.9
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCC-chHHHHHHHHHHhcCCCeEEEEeccch
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~~f~~a~~~~p~ilfiDEid~ 585 (807)
..+++|+||||||||+||.+++.++ +.....++.++++...-.. ........++..... .+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 4679999999999999999999875 6677788888886543211 111233444544433 5999999854
No 454
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.13 E-value=6.2e-05 Score=90.77 Aligned_cols=150 Identities=27% Similarity=0.396 Sum_probs=90.8
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (807)
..|+++.|.+..++.+.+.+..-. ....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457788898888888876665411 234579999999999999999997754 468999999765321
Q ss_pred -----hhch--------hHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc--------
Q 003620 282 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (807)
Q Consensus 282 -----~~g~--------~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (807)
..|. ...... .|+.+ ...+|||||++.+.. .+...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a---~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELA---DKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhc---CCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111111 23332 346999999998742 23355666664321
Q ss_pred -CCceEEEEEecCCCC-------CCCHHhhccCccceEEEeCCCChHHHHH
Q 003620 341 -SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 341 -~~~~viVI~atn~~~-------~ld~al~r~~rf~~~i~i~~P~~~~R~~ 383 (807)
....+-+|++|+..- .+...+-. |+. .+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHh
Confidence 123567888877541 11222211 332 35566777666655
No 455
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.12 E-value=1.1e-05 Score=87.99 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=82.9
Q ss_pred cChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhh----
Q 003620 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA---- 283 (807)
Q Consensus 211 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~---- 283 (807)
.|....++++.+.+.... .....|||+|++||||+++|++|-... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 355566666655554311 234679999999999999999996554 46899999976532111
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc---------CCceEE
Q 003620 284 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 346 (807)
Q Consensus 284 -g~~~-------~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~vi 346 (807)
|... ..-...|+.+ ...+||||||+.|.. .+...|+..++.-. ....+-
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0000112322 346999999998742 23355666664321 123567
Q ss_pred EEEecCCC-------CCCCHHhhccCccceEEEeCCCChHHHHH
Q 003620 347 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 347 VI~atn~~-------~~ld~al~r~~rf~~~i~i~~P~~~~R~~ 383 (807)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 78877653 122333433 442 24566666666654
No 456
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=6.5e-06 Score=90.52 Aligned_cols=195 Identities=23% Similarity=0.314 Sum_probs=114.2
Q ss_pred ccccccccchhhHHHhhHhhhcCCCCchhhhhhcccCCCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc
Q 003620 477 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~ 553 (807)
......|+|......++.+.|.... .....|||.|.+||||-.+|+++-..+ +.||+.+||+-+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4566778888888777776665321 123459999999999999999999887 46999999976531
Q ss_pred -----cccCC----c---hHHHHHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhccc-----CCC
Q 003620 554 -----MWFGE----S---EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD-----GMS 616 (807)
Q Consensus 554 -----~~vg~----s---e~~i~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld-----~~~ 616 (807)
..+|. . ...-+.-|+.|... -||+|||..+. ..+...||..|. .+-
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 11221 1 11123345555555 89999997763 234445554443 332
Q ss_pred CC----CcEEEEecCCCCCCCCccccCCCCcceeE-------EecCCCHHHHH--------HHHHHHhccCCCC-c---c
Q 003620 617 AK----KTVFIIGATNRPDIIDPALLRPGRLDQLI-------YIPLPDEDSRH--------QIFKACLRKSPVS-K---D 673 (807)
Q Consensus 617 ~~----~~vivi~aTn~~~~ld~allrpgRfd~~i-------~~~~p~~~~r~--------~Il~~~~~~~~~~-~---~ 673 (807)
+. -.|-||||||+- |..+. +-|+|-.-+ .+..|-..+|. ..++.+-++.+.. . .
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 22 258899999972 32333 235554222 22333333322 2222222333331 1 1
Q ss_pred ccHHHHHHHcCCCCHHhHHHHHHHHHHHH
Q 003620 674 VDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 674 ~dl~~la~~t~g~sgadi~~l~~~A~~~a 702 (807)
.-++.|.++.-=-+-+++++++..|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 12344444433336689999999999988
No 457
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.11 E-value=1.4e-05 Score=93.57 Aligned_cols=125 Identities=26% Similarity=0.417 Sum_probs=79.2
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (807)
..++++.|.+..++++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 467789999999888877765422 235679999999999999999998764 468999999765321
Q ss_pred hh-----chhHH----HH---HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----C---
Q 003620 282 LA-----GESES----NL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S--- 341 (807)
Q Consensus 282 ~~-----g~~~~----~l---~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~--- 341 (807)
.. |.... .. ...|+. ....+||||||+.+... ....|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCce
Confidence 11 10000 00 001121 23468999999987532 3355666664321 0
Q ss_pred -CceEEEEEecCCC
Q 003620 342 -RAHVIVIGATNRP 354 (807)
Q Consensus 342 -~~~viVI~atn~~ 354 (807)
...+-+|++|+..
T Consensus 328 ~~~~~riI~~s~~~ 341 (534)
T TIGR01817 328 LKVDVRLVAATNRD 341 (534)
T ss_pred EeecEEEEEeCCCC
Confidence 1246777777653
No 458
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.11 E-value=8.6e-06 Score=80.56 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=67.3
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------h---hh---------------chhHHH
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------K---LA---------------GESESN 289 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~---~~---------------g~~~~~ 289 (807)
+.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. . +. -...++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 456788899999999999999999999976321 12333321100 0 00 011233
Q ss_pred HHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCC
Q 003620 290 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 356 (807)
Q Consensus 290 l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ 356 (807)
-+..+..+....|.++++||. ...++.....++.+++..+... +..+|.+||+++.
T Consensus 103 qrv~la~al~~~p~~lllDEP----------t~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~ 158 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEP----------NSHLDVEGERALNQAIAALKAA-GATRIVIAHRPET 158 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECC----------ccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 455677777889999999994 3334444445566666555433 3456667777543
No 459
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.11 E-value=9.9e-06 Score=87.21 Aligned_cols=70 Identities=26% Similarity=0.502 Sum_probs=48.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhhhchhH-HHHHHHHHHHHhcCCeEEEEccchh
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~Il~iDEid~ 312 (807)
.+++++|+||+|||||+|+.++|+++ +..+..+..++++........ ..+...++.. ....+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 46799999999999999999999987 566777777777654332111 1123333332 2456999999864
No 460
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.11 E-value=1.3e-05 Score=77.62 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=72.8
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh-----------------------------------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI----------------------------------- 278 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l----------------------------------- 278 (807)
++.+.+++.+.|+||+|+|||||+|.|..+.... -+.+++.++
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 4567889999999999999999999998765311 111111111
Q ss_pred -----hh--------------hhhc------------hhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHH
Q 003620 279 -----MS--------------KLAG------------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 279 -----~~--------------~~~g------------~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
.+ .++| ...++-|..+..|.-++|.+|+-|| +.+.++..
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE----------PTGNLDp~ 171 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE----------PTGNLDPD 171 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecC----------CCCCCChH
Confidence 00 0011 1123345566677778999999999 66667777
Q ss_pred HHHHHHHHhhcccCCceEEEEEecCCCCCCC
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld 358 (807)
....++.++..+... ...|+.+|++.+.++
T Consensus 172 ~s~~im~lfeeinr~-GtTVl~ATHd~~lv~ 201 (223)
T COG2884 172 LSWEIMRLFEEINRL-GTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHHHhhc-CcEEEEEeccHHHHH
Confidence 777888888887654 455556777755443
No 461
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.10 E-value=9e-06 Score=80.80 Aligned_cols=110 Identities=20% Similarity=0.257 Sum_probs=67.5
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh------h---h----------------hc--hh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS------K---L----------------AG--ES 286 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~------~---~----------------~g--~~ 286 (807)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++.++.. . + .. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567889999999999999999999999876421 23344322110 0 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 287 ~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
.++-+..+..+....|.++++||.. ..++......+.+++..+.. ...+|.+||+++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~----------~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPT----------VGLDPITERQLLSLIFEVLK--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence 2344555677777899999999943 33333344555555555532 24555677776544
No 462
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=1.9e-05 Score=85.84 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=86.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC-------------------------eEEEEechhhhhhhhc-----hhHHHH
Q 003620 241 PPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFCINGPEIMSKLAG-----ESESNL 290 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~-------------------------~~i~v~~~~l~~~~~g-----~~~~~l 290 (807)
-+..+||+||+|+|||++|+.+|+.+.+ .++.+....- ....| -.-..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHHH
Confidence 3557999999999999999999988642 1333332100 00001 124556
Q ss_pred HHHHHHHHh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCc
Q 003620 291 RKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGR 366 (807)
Q Consensus 291 ~~vf~~a~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~r 366 (807)
|.+.+.+.. ....|+++|+++.+- ......|++.++.... .+.+|.+|++++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 776665543 334588888887663 2345667888877643 35566689999999999887 5
Q ss_pred cceEEEeCCCChHHHHHHHHH
Q 003620 367 FDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 367 f~~~i~i~~P~~~~R~~il~~ 387 (807)
. ..+.++.|+.++-.+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 4 5578899988887777753
No 463
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.10 E-value=7.4e-06 Score=97.59 Aligned_cols=159 Identities=22% Similarity=0.197 Sum_probs=86.8
Q ss_pred ccchhhHHHhhHhhhcCCCCchhhhh--------hcccCCCCCceeeCCCCCChhHHHHHHHHHhC-------CeEEEEe
Q 003620 483 IGGLENVKRELQETVQYPVEHPEKFE--------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVK 547 (807)
Q Consensus 483 i~g~~~vk~~l~~~v~~~~~~~~~~~--------~~~~~~~~giLl~GppGtGKT~lakalA~~~~-------~~~i~v~ 547 (807)
|.|.+.+|+.+.-.+........... ...++...+|||.|+||||||.+|++++.... .++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 56888888877544322221100000 01233344699999999999999999998653 2333332
Q ss_pred CccccccccCC-c-hHHH-HHHHHHHhcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC--------
Q 003620 548 GPELLTMWFGE-S-EANV-REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 616 (807)
Q Consensus 548 ~~~l~~~~vg~-s-e~~i-~~~f~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-------- 616 (807)
...... +.+. + +..+ ...+..|.. .+++|||++.+.. .....|+..|+.-.
T Consensus 532 LTa~~~-~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkms~--------------~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 532 LTASIK-FNESDNGRAMIQPGAVVLANG---GVCCIDELDKCHN--------------ESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccchhh-hcccccCcccccCCcEEEcCC---CeEEecchhhCCH--------------HHHHHHHHHHhCCEEEEecCCc
Confidence 222110 0000 0 0000 001122333 4999999999743 23344455443211
Q ss_pred ---CCCcEEEEecCCCCC-------------CCCccccCCCCcceeEEe-cCCCHHHHHHHH
Q 003620 617 ---AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEDSRHQIF 661 (807)
Q Consensus 617 ---~~~~vivi~aTn~~~-------------~ld~allrpgRfd~~i~~-~~p~~~~r~~Il 661 (807)
-..++-||||+|..+ .|.++++. |||.++.+ +.|+.+.=..|-
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHH
Confidence 134788999999742 25688998 99977554 567765444443
No 464
>PRK06921 hypothetical protein; Provisional
Probab=98.09 E-value=3e-06 Score=89.52 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCceeeCCCCCChhHHHHHHHHHh----CCeEEEEeCccccccccCCchHHHHHHHHHHhcCCCeEEEEeccch
Q 003620 515 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 515 ~~giLl~GppGtGKT~lakalA~~~----~~~~i~v~~~~l~~~~vg~se~~i~~~f~~a~~~~p~ilfiDEid~ 585 (807)
..+++|+||||+|||+|+.++|.++ +...+.+...+++..... ........++... ...+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 4679999999999999999999975 445666776665432211 0111122223332 346999999954
No 465
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.09 E-value=4.5e-06 Score=87.54 Aligned_cols=68 Identities=29% Similarity=0.481 Sum_probs=48.2
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCcccccccc-----CCchHHHHHHHHHHhcCCCeEEEEeccch
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~v-----g~se~~i~~~f~~a~~~~p~ilfiDEid~ 585 (807)
...+++|+||||+|||+||-|+|.++ +...+.+..++++...- |..+..+... ... ..+|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l~~--~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---LKK--VDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---hhc--CCEEEEecccC
Confidence 45789999999999999999999986 56788888888875421 1222222221 222 35999999877
Q ss_pred h
Q 003620 586 I 586 (807)
Q Consensus 586 l 586 (807)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 466
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=5.4e-06 Score=82.01 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=67.3
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-----------------hhhc---------hhH
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-----------------KLAG---------ESE 287 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-----------------~~~g---------~~~ 287 (807)
++.+.+++.+.|.||+|+|||||++.|++..... -+.+++..+.. .+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3456788899999999999999999999875311 12222211100 0000 112
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 288 ~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
++-+..+..+....|.++++||.. ..++......+.+++..+..+ ...+|.+||+++.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~ 158 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPT----------SGLDPESRREFWELLRELKKE-GKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
Confidence 334455777778899999999943 333344445566666655444 34566677776543
No 467
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.09 E-value=1.2e-05 Score=79.43 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------------EEEEechhhhhhh----------hc--hhHHHH
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFCINGPEIMSKL----------AG--ESESNL 290 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------------~i~v~~~~l~~~~----------~g--~~~~~l 290 (807)
++.+.++..+.|.||+|||||||++++....+.. +..+...++...+ .. ...++-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 3567888999999999999999999996432221 1111111111110 00 112344
Q ss_pred HHHHHHHHhcC--CeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC
Q 003620 291 RKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 291 ~~vf~~a~~~~--p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
+..+..+.... |.++++||. ...++......+.+.+..+... ...||.+||+++
T Consensus 95 rl~laral~~~~~p~llLlDEP----------t~~LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEP----------STGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 55566777778 999999994 3344444555666666655432 345666778764
No 468
>PF05729 NACHT: NACHT domain
Probab=98.09 E-value=3e-05 Score=75.52 Aligned_cols=140 Identities=21% Similarity=0.331 Sum_probs=74.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechhhhhhh------------hchhHHHHHHHH-HHHHhcC
Q 003620 244 GILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKL------------AGESESNLRKAF-EEAEKNA 301 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~------------~g~~~~~l~~vf-~~a~~~~ 301 (807)
-++|+|+||+|||++++.++..+. ..++.+...+..... .......+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987652 122334333322110 001111111111 2233455
Q ss_pred CeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc-ccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHH
Q 003620 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (807)
Q Consensus 302 p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~ 380 (807)
..+++||.+|.+...... .........|..++.. ...+.+++| ++. +..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678999999998764322 1122333444455544 222334343 333 222211 33211222568888889999
Q ss_pred HHHHHHHHhc
Q 003620 381 RLEVLRIHTK 390 (807)
Q Consensus 381 R~~il~~~~~ 390 (807)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9988887664
No 469
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.9e-06 Score=94.59 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=40.5
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
...|.||.|++..++.+..... -+.++|++||||||||+|++.+.+.++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 4578899999999888754432 256899999999999999999988765
No 470
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.08 E-value=7.4e-05 Score=85.82 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=51.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 003620 200 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (807)
Q Consensus 200 ~~~~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (807)
+++.+.+.++++-..+-+++++.++...+. +-.+.+-+||+|||||||||+++.||++++..+...
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 456777888899888888888888864221 223345689999999999999999999999877654
No 471
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=0.00011 Score=79.21 Aligned_cols=150 Identities=18% Similarity=0.274 Sum_probs=93.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe---------------------EEEEe-chhhhhh--hhchhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFCIN-GPEIMSK--LAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---------------------~i~v~-~~~l~~~--~~g~~~~~l~~vf~~a 297 (807)
+..+||+||+|+||+++|.++|..+-+. ++.+. .++-.+. ...-.-..+|.+.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4469999999999999999999876321 12221 0000000 0001234566665544
Q ss_pred Hh----cCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~~----~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
.. ..--|++||++|.+.. ...+.|++.|+.-.. ++++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~--~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSP--GRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCC--CCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 2336999999998742 345778888887543 56677778889999999998 66 45789
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcH
Q 003620 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (807)
Q Consensus 374 ~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~ 412 (807)
+.|+.++-.+.|... ... ..+...++..++|-.+
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 999988777777532 111 2223345555555444
No 472
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=5.6e-06 Score=80.46 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=67.3
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------hhhc-----hhHHHHHHHHHHHHhcC
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLAG-----ESESNLRKAFEEAEKNA 301 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------~~~g-----~~~~~l~~vf~~a~~~~ 301 (807)
++.+.++..++|.||+|+|||||+++|++.+... -+.+++..+.. ...+ ...++-+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3456788899999999999999999999986532 24444432211 0011 11233344466666778
Q ss_pred CeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCC
Q 003620 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 302 p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld 358 (807)
|.++++||...- ++......+.+.+..+... ...++.++|+++.+.
T Consensus 99 ~~i~ilDEp~~~----------lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 99 PDLLLLDEPTSG----------LDPASRERLLELLRELAEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 899999995432 2233334455555444333 235566777765543
No 473
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=5.4e-05 Score=82.58 Aligned_cols=127 Identities=14% Similarity=0.197 Sum_probs=86.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~l~~vf~~a 297 (807)
+..+||+||+|+||+++|+++|..+-+. ++.+.... .+ ..-.-..+|.+.+..
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~idqiR~l~~~~ 100 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GK--SSLGVDAVREVTEKL 100 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cc--ccCCHHHHHHHHHHH
Confidence 4579999999999999999999876321 22221100 00 001234555555443
Q ss_pred ----HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEe
Q 003620 298 ----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ----~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i 373 (807)
....--|++||++|.+-. ...+.|++.|++- ..++++|.+|+.++.+.|.+++ |.. .+.+
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred hhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 334456999999998742 3457788888874 4477888889999999999998 664 4789
Q ss_pred CCCChHHHHHHHHH
Q 003620 374 GVPDEVGRLEVLRI 387 (807)
Q Consensus 374 ~~P~~~~R~~il~~ 387 (807)
++|+.++-.+.|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (334)
T PRK07993 165 APPPEQYALTWLSR 178 (334)
T ss_pred CCCCHHHHHHHHHH
Confidence 99988877776653
No 474
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=4.5e-05 Score=77.85 Aligned_cols=150 Identities=20% Similarity=0.351 Sum_probs=95.7
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh-CCe----------------------------EEEEeCccccccccCCchH-HHHH
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC-QAN----------------------------FISVKGPELLTMWFGESEA-NVRE 565 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~-~~~----------------------------~i~v~~~~l~~~~vg~se~-~i~~ 565 (807)
.++++|||+|+||-|.+.++-+++ |.+ .+.++.+| .|...+ -+.+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 469999999999999999888775 211 11122222 233222 3445
Q ss_pred HHHHHhcC---------CCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCcc
Q 003620 566 IFDKARQS---------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 636 (807)
Q Consensus 566 ~f~~a~~~---------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~a 636 (807)
+.+...+. ...|++|-|+|.|... ++.+.+|. |+...+ ++-+|..+|..+.|=++
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT~d-------AQ~aLRRT-------MEkYs~--~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELTRD-------AQHALRRT-------MEKYSS--NCRLILVCNSTSRIIEP 173 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhhHH-------HHHHHHHH-------HHHHhc--CceEEEEecCcccchhH
Confidence 55544333 3479999999998542 23334444 443333 33455556777777666
Q ss_pred ccCCCCcceeEEecCCCHHHHHHHHHHHhccCCCCcccc-HHHHHHHcCCCCHHhHHH
Q 003620 637 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 693 (807)
Q Consensus 637 llrpgRfd~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~d-l~~la~~t~g~sgadi~~ 693 (807)
+.+ |+ ..|.+|-|+.++...++...+++..+..+.+ +..+|+.++| +++.
T Consensus 174 IrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~----nLRr 224 (351)
T KOG2035|consen 174 IRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR----NLRR 224 (351)
T ss_pred Hhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc----cHHH
Confidence 665 55 3789999999999999999998887665544 4667766554 6654
No 475
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.08 E-value=1.5e-05 Score=90.83 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=74.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE--EEEechhhhh--------------------------hhhchhHHHH
Q 003620 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS--------------------------KLAGESESNL 290 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~--------------------------~~~g~~~~~l 290 (807)
+..+.+++|+||||||||+|++.+++.+...- ..+.+..+.+ ...|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 35677899999999999999999998764210 1122111110 0111100000
Q ss_pred HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----------CCceEEEEEecCCCC----
Q 003620 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---- 355 (807)
Q Consensus 291 ~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~viVI~atn~~~---- 355 (807)
-..+..|. ..+||+||++.+- ..+...|++.|+.-. ...++.+|+++|...
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11223332 3599999987542 345566666664321 124688999998742
Q ss_pred -----------------CCCHHhhccCccceEEEeCCCChH
Q 003620 356 -----------------SIDPALRRFGRFDREIDIGVPDEV 379 (807)
Q Consensus 356 -----------------~ld~al~r~~rf~~~i~i~~P~~~ 379 (807)
.++..+.. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24455655 89999999988765
No 476
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.07 E-value=1.2e-05 Score=92.62 Aligned_cols=125 Identities=29% Similarity=0.403 Sum_probs=79.9
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHH-----------hCCeEEEE
Q 003620 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCI 273 (807)
Q Consensus 205 ~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~-----------l~~~~i~v 273 (807)
-.|+++.|.+..++++++.+...- .....|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 357889999999999888775421 23457999999999999999999765 35689999
Q ss_pred echhhhhhh-----hchhHH--------HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc
Q 003620 274 NGPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (807)
Q Consensus 274 ~~~~l~~~~-----~g~~~~--------~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (807)
||..+.... .|.... .-...|+.+. ...||||||+.|... +...|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 997653211 111000 0011333332 358999999987532 3345666664321
Q ss_pred -----C----CceEEEEEecCCC
Q 003620 341 -----S----RAHVIVIGATNRP 354 (807)
Q Consensus 341 -----~----~~~viVI~atn~~ 354 (807)
. ...+-+|++|+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EEecCCCceeccceEEEEecCCC
Confidence 1 1245678787753
No 477
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.07 E-value=8.9e-06 Score=83.81 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=74.9
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------hhhch--h
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------KLAGE--S 286 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------------------------~~~g~--~ 286 (807)
++.+..++.+.|+|.+||||||++|.|.+..... -+..++.++.. +|..+ .
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 3456789999999999999999999999876522 23344333211 11111 1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC
Q 003620 287 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 287 ~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
.++-|-.+..|..-.|.+++.||.-+. .+..+..|++++|..++...++..+-.+|+..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSa----------LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSA----------LDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhh----------cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 233455677788889999999996543 34456688888888887776767666777653
No 478
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.06 E-value=2.2e-05 Score=80.10 Aligned_cols=115 Identities=23% Similarity=0.354 Sum_probs=65.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhh-h---hhh-------------------chhHHHHH
Q 003620 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM-S---KLA-------------------GESESNLR 291 (807)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~-~---~~~-------------------g~~~~~l~ 291 (807)
|+.++.-++|+||||||||+++..++... +...++++...+. . ... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888999999999999999999887543 4556667664310 0 000 01112234
Q ss_pred HHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecC
Q 003620 292 KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 292 ~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn 352 (807)
.+.+......+.+|+||-+..+.............+.+..++..|..+....++.++.+.+
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444455557899999999988643211111111112222333343343445666665544
No 479
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.05 E-value=0.00013 Score=83.32 Aligned_cols=172 Identities=22% Similarity=0.314 Sum_probs=104.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEEEechhhhh----------hhhchh------HHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPEIMS----------KLAGES------ESNLRKAFE 295 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~l~~----------~~~g~~------~~~l~~vf~ 295 (807)
+..+.+.|-||||||..++.+-.++. ..|+.|||-.+.+ .+.|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 34699999999999999999877553 4578899865532 222221 112222233
Q ss_pred HH-HhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-CCceEEEEEecCCCCCCCHHhh--ccCccc-eE
Q 003620 296 EA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDPALR--RFGRFD-RE 370 (807)
Q Consensus 296 ~a-~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~viVI~atn~~~~ld~al~--r~~rf~-~~ 370 (807)
.+ ....++|++|||+|.|+...+ .-|.++++... .+.+++||+..|.++.....|- -..|++ .+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Q-----------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQ-----------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccH-----------HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 21 234578999999999986532 23555555432 3567888888887764332221 012433 56
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCCCCchhhhHHhhhcCCCcHHH--HHHHHHHHHH
Q 003620 371 IDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGAD--LAALCTEAAL 424 (807)
Q Consensus 371 i~i~~P~~~~R~~il~~~~~~~~~~~~~~l~~la~~t~g~~~~d--l~~l~~~a~~ 424 (807)
+.|.+.+..+..+|+...+.......+.-++.+|+....-+|.- ...+|++|+.
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 88999999999999988877664444444455555443333322 2234555543
No 480
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.04 E-value=9e-06 Score=93.11 Aligned_cols=169 Identities=23% Similarity=0.272 Sum_probs=94.0
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccc-----cCCch-------HHHHHHHHHHhcCCCeEEEE
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 580 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~-----vg~se-------~~i~~~f~~a~~~~p~ilfi 580 (807)
..++++|++||||+++|+++.... ..+|+.+++..+...+ +|... ......|..|. ...|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECC---CCEEEE
Confidence 458999999999999999998876 3689999998763211 11100 00111222333 358999
Q ss_pred eccchhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----C----CCcEEEEecCCCC-------CCCCccccCCCCcc
Q 003620 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 644 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~vivi~aTn~~-------~~ld~allrpgRfd 644 (807)
|||+.+.. .+...|+..++.-. . ..++-+|+||+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 99999843 34455555544211 0 1256777777764 223333333 443
Q ss_pred -eeEEecCCCH--HHHHHHHHHHhccC----C---CC-ccccHHHHHHHcCCCCHHhHHHHHHHHHHHHH
Q 003620 645 -QLIYIPLPDE--DSRHQIFKACLRKS----P---VS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 645 -~~i~~~~p~~--~~r~~Il~~~~~~~----~---~~-~~~dl~~la~~t~g~sgadi~~l~~~A~~~a~ 703 (807)
..|.+|+.-. ++...+++.++++. . .. .+.-+..|..+.---+-++|++++..|+..+-
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 3444554422 23333555554332 1 11 12224555554433466899999998886543
No 481
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.04 E-value=1.2e-05 Score=89.60 Aligned_cols=153 Identities=29% Similarity=0.398 Sum_probs=93.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (807)
..+|++|.|-...+.++.+..... ......|||.|.+||||..+|++|=+.. +.+|+.+||.-+-.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457889999988888877766542 2345679999999999999999996554 67899999965421
Q ss_pred ---------hhhchhHHHH----HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcc-----c--
Q 003620 281 ---------KLAGESESNL----RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K-- 340 (807)
Q Consensus 281 ---------~~~g~~~~~l----~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~-- 340 (807)
-..|...... .-.|+.|.. ..||+|||..+. ..+...|+..+..- .
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCCC
Confidence 1111111111 123444433 489999997663 22345555555321 1
Q ss_pred --CCceEEEEEecCCCCCCCHHhhccCccc-------eEEEeCCCChHHHHHH
Q 003620 341 --SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEV 384 (807)
Q Consensus 341 --~~~~viVI~atn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~i 384 (807)
....|-||+|||+. +..++. -|+|- ..+.+.+|...+|.+-
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eD 425 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKED 425 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcch
Confidence 12468899999974 222222 12332 2345667776666553
No 482
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.03 E-value=0.00021 Score=73.31 Aligned_cols=28 Identities=46% Similarity=0.828 Sum_probs=25.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 240 KPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
-.++.+||.||||||||.||-+|++++|
T Consensus 62 maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 3578999999999999999999999986
No 483
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=3.4e-05 Score=74.70 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=62.2
Q ss_pred ceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccc----------------------cccCC--chHHHHHHHHHH
Q 003620 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----------------------MWFGE--SEANVREIFDKA 570 (807)
Q Consensus 518 iLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~----------------------~~vg~--se~~i~~~f~~a 570 (807)
++++||||+|||++++.++... +.+.+.++...... .+... ........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 34555554433221 00011 111122345566
Q ss_pred hcCCCeEEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCC
Q 003620 571 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 571 ~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~ 631 (807)
....|.++++||+..+................+.+..++..+.. .++.++.+++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCC
Confidence 77788999999999987542210001112334445555544432 3455555555543
No 484
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.03 E-value=0.00025 Score=72.59 Aligned_cols=177 Identities=20% Similarity=0.256 Sum_probs=108.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC--------------
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------------- 268 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------------- 268 (807)
.+-+++.+.+.++....+..+..- ..-.++++|||+|+||-|.+-++-+++-.
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 334455566666666655544321 11247999999999999999998877521
Q ss_pred ---------------eEEEEechhhhhhhhch-hHHHHHHHHHHHHhcC---------CeEEEEccchhccCCCCCCchh
Q 003620 269 ---------------FFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNA---------PSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 269 ---------------~~i~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~---------p~Il~iDEid~l~~~~~~~~~~ 323 (807)
..+.++.++. |- ..--+..++++..+.+ ..+++|-|.|.|.
T Consensus 75 tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------- 140 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------- 140 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh---------
Confidence 0122222221 21 1223444555443322 2588899988764
Q ss_pred HHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeCCCChHHHHHHHHHHhcCCCCC-CchhhhH
Q 003620 324 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLER 402 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~l~~ 402 (807)
+.....|...|+.+....++ |..+|....+-+++++ |. ..+.++.|+.++-..++...+++-.+. ...-+..
T Consensus 141 --~dAQ~aLRRTMEkYs~~~Rl--Il~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~r 213 (351)
T KOG2035|consen 141 --RDAQHALRRTMEKYSSNCRL--ILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKR 213 (351)
T ss_pred --HHHHHHHHHHHHHHhcCceE--EEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 33446677788877765444 4466777778888888 44 347899999999999988766543332 2334677
Q ss_pred HhhhcCCCcHH
Q 003620 403 IAKDTHGYVGA 413 (807)
Q Consensus 403 la~~t~g~~~~ 413 (807)
+++.+.|-...
T Consensus 214 Ia~kS~~nLRr 224 (351)
T KOG2035|consen 214 IAEKSNRNLRR 224 (351)
T ss_pred HHHHhcccHHH
Confidence 77777664433
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=7.5e-06 Score=81.37 Aligned_cols=112 Identities=20% Similarity=0.322 Sum_probs=68.1
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh---------h-----------hhh----------
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------S-----------KLA---------- 283 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~---------~-----------~~~---------- 283 (807)
++.+.++..+.|.||+|+|||||+++|++.+... -+.+++.++. . .+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheee
Confidence 3456788899999999999999999999875421 1222221110 0 000
Q ss_pred -chhHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCC
Q 003620 284 -GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 284 -g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~l 357 (807)
-...++-+..+..+....|.++++||. ...++......+.+++..+.......+|.+||+++.+
T Consensus 100 ~lS~G~~qr~~la~al~~~p~llilDEP----------~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 100 GLSGGQQQRVALARALAMDPDVLLLDEP----------TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCC----------cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 011234455577777889999999994 3334444455666666655443234556677776544
No 486
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.03 E-value=1.7e-05 Score=80.11 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCC-ceEEEEEecCCCCCCCHHhhc
Q 003620 289 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRR 363 (807)
Q Consensus 289 ~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-~~viVI~atn~~~~ld~al~r 363 (807)
+-+.+|..|.-..|.++++||-- ..++-.....|++.++.+... +...++..|+..+++++.+.+
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~----------~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPA----------QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCcc----------ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 34566778888899999999942 233333345566666554432 234455578999999886654
No 487
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.03 E-value=9.5e-06 Score=87.80 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=60.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eEEEEec----hh
Q 003620 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----PE 277 (807)
Q Consensus 209 ~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~v~~----~~ 277 (807)
++.|+++.++++.+.+.... ..++ ...+.++|+|||||||||||++|++.++. +++.+.+ +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a------~g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA------QGLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH------hcCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 79999999998877765422 1111 23466899999999999999999999976 7888877 55
Q ss_pred hhhhhhchhHHHHHHHHHHH
Q 003620 278 IMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 278 l~~~~~g~~~~~l~~vf~~a 297 (807)
+.....+-....++..|.+.
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CccCCcccCCHHHHHHHHHH
Confidence 55555555666677766544
No 488
>PRK06851 hypothetical protein; Provisional
Probab=98.03 E-value=0.00013 Score=79.86 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.3
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 549 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~ 549 (807)
+-++|.|+|||||||+++.++.++ |.......++
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 448999999999999999999877 4444444443
No 489
>PRK12377 putative replication protein; Provisional
Probab=98.02 E-value=6.4e-06 Score=85.73 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=46.9
Q ss_pred CCceeeCCCCCChhHHHHHHHHHh---CCeEEEEeCccccccccCC--chHHHHHHHHHHhcCCCeEEEEeccchh
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~---~~~~i~v~~~~l~~~~vg~--se~~i~~~f~~a~~~~p~ilfiDEid~l 586 (807)
.+++|+||||||||+||.++|..+ +..++.++.++++...-.. .......+++... ...+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 579999999999999999999987 4566777777776532110 0001223444433 3469999999764
No 490
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.01 E-value=5.1e-05 Score=88.18 Aligned_cols=152 Identities=23% Similarity=0.360 Sum_probs=90.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhh
Q 003620 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 279 (807)
Q Consensus 203 ~~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~ 279 (807)
...+|+++.|.+..++++.+.+..-. .....|+|+|++||||+++|+++-... ..+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45688999999988887766654211 124569999999999999999985543 3689999997753
Q ss_pred hhh-----hchhH-------HHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-------
Q 003620 280 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 340 (807)
Q Consensus 280 ~~~-----~g~~~-------~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 340 (807)
... .|... ..-...|+.+ ....||||||+.+.+. +...|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123332 2468999999987532 2344555554311
Q ss_pred --CCceEEEEEecCCC-C------CCCHHhhccCccceEEEeCCCChHHHH
Q 003620 341 --SRAHVIVIGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRL 382 (807)
Q Consensus 341 --~~~~viVI~atn~~-~------~ld~al~r~~rf~~~i~i~~P~~~~R~ 382 (807)
....+-||++|+.. . .+.+.|.. |+.. +.+..|...+|.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~ 381 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRP 381 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccCh
Confidence 11346677777653 1 23344443 4432 556666666655
No 491
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00011 Score=82.69 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=27.4
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.+++-..|.|.+|+|||||.+.|++..
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~ 58 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCcc
Confidence 4566889999999999999999999998765
No 492
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.00 E-value=1.5e-05 Score=75.73 Aligned_cols=59 Identities=29% Similarity=0.583 Sum_probs=41.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC---eEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhcc
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~---~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~Il~iDEid~l~ 314 (807)
...|+|+|++||||+++|++|....+. +++.++|..+. ...++.+ ....|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 457999999999999999999887653 45666665432 2344443 55699999999874
No 493
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00014 Score=78.52 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=87.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC-----------------------eEEEEechhhhhhhhchhHHHHHHHHHHHH
Q 003620 242 PKGILLYGPPGSGKTLIARAVANETGA-----------------------FFFCINGPEIMSKLAGESESNLRKAFEEAE 298 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~-----------------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~ 298 (807)
+..+||+||.|+||+++|+.+|..+-+ .++.+.... .++. -.-..+|.+.+.+.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHHh
Confidence 457999999999999999999987632 122222110 0000 12344555544332
Q ss_pred ----hcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCCCCCHHhhccCccceEEEeC
Q 003620 299 ----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 299 ----~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~ 374 (807)
...--|++||++|.+.. ...+.|++.+++-. .++++|..|+.++.+-|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPA--PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCC--CCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 23346999999998742 24467888888743 467888888999999999998 66 468899
Q ss_pred CCChHHHHHHHHH
Q 003620 375 VPDEVGRLEVLRI 387 (807)
Q Consensus 375 ~P~~~~R~~il~~ 387 (807)
.|+.++-.+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888877754
No 494
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=3.3e-05 Score=81.65 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCCCceeeCCCCCChhHHHHHHHHHhCCeE--------EEEeCccccccc-cCC----chHHHHHHHHHHh----cCCCe
Q 003620 514 PSKGVLFYGPPGCGKTLLAKAIANECQANF--------ISVKGPELLTMW-FGE----SEANVREIFDKAR----QSAPC 576 (807)
Q Consensus 514 ~~~giLl~GppGtGKT~lakalA~~~~~~~--------i~v~~~~l~~~~-vg~----se~~i~~~f~~a~----~~~p~ 576 (807)
.+..+||+||.|+||+++|.++|..+-+.- -.-.-||+.--. .|. +-..+|.+-+.+. .+...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 345699999999999999999998763210 011122221100 011 2345555555443 34457
Q ss_pred EEEEeccchhhhccCCCCCCCCchHHHHHHHHHhcccCCCCCCcEEEEecCCCCCCCCccccCCCCcceeEEecCC
Q 003620 577 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 577 ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~vivi~aTn~~~~ld~allrpgRfd~~i~~~~p 652 (807)
|++||++|.+. ....|.||..|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 98 v~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred EEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 99999999973 4567889999986 45567777778888888888877 775 5666654
No 495
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=1.5e-05 Score=85.50 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=72.7
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh--------------------------------hhhh
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--------------------------------MSKL 282 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--------------------------------~~~~ 282 (807)
+.+.++.-+.|.||+|+|||||.++|++.+... -+.+++.+. ....
T Consensus 26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l 105 (293)
T COG1131 26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL 105 (293)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH
Confidence 456778889999999999999999999876321 122222100 0111
Q ss_pred hch------------------------------hHHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHH
Q 003620 283 AGE------------------------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 283 ~g~------------------------------~~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.+. ...+-+..+..+....|.++|+|| +.+.++......+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~~ 175 (293)
T COG1131 106 YGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE----------PTSGLDPESRREI 175 (293)
T ss_pred hCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC----------CCcCCCHHHHHHH
Confidence 110 011223344556667899999999 4555556666777
Q ss_pred HHHhhcccCCceEEEEEecCCCCCCCH
Q 003620 333 LTLMDGLKSRAHVIVIGATNRPNSIDP 359 (807)
Q Consensus 333 l~~ld~~~~~~~viVI~atn~~~~ld~ 359 (807)
.+++..+....+..|+.+||.++.+..
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 777777777666778889998876543
No 496
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.97 E-value=2.6e-05 Score=90.78 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=84.2
Q ss_pred CCceeeCCCCCChhHHHHHHHHHhCC--eEEEEeCccccccccCCc--hHHH--------HHHHHHHhcCCCeEEEEecc
Q 003620 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANV--------REIFDKARQSAPCVLFFDEL 583 (807)
Q Consensus 516 ~giLl~GppGtGKT~lakalA~~~~~--~~i~v~~~~l~~~~vg~s--e~~i--------~~~f~~a~~~~p~ilfiDEi 583 (807)
.|+++.|+.|++||+++++++..+.. +|+.+-..--....+|.. +..+ .-++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 57999999999999999999999754 777664433333334432 1111 122233333 49999999
Q ss_pred chhhhccCCCCCCCCchHHHHHHHHHhcccCCC-----------CCCcEEEEecCCCC---CCCCccccCCCCcceeEEe
Q 003620 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~vivi~aTn~~---~~ld~allrpgRfd~~i~~ 649 (807)
..+ .+.+++.|++-|+.-. ...++++||+-|.. ..|.++++. ||+..+.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 775 4678899998887531 12467888875432 347888998 99999999
Q ss_pred cCCCHHH
Q 003620 650 PLPDEDS 656 (807)
Q Consensus 650 ~~p~~~~ 656 (807)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 497
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.97 E-value=2.7e-05 Score=76.46 Aligned_cols=106 Identities=25% Similarity=0.392 Sum_probs=63.7
Q ss_pred hcCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEec----------hhh-----hhh----hh--chhHHHHHH
Q 003620 236 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCING----------PEI-----MSK----LA--GESESNLRK 292 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~----------~~l-----~~~----~~--g~~~~~l~~ 292 (807)
++.+.+++.+.|.||+|+|||||++.|++.+... -+.+++ ..+ ... .. -...++-+.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 3456789999999999999999999999876311 011111 001 000 00 012234455
Q ss_pred HHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhcccCCceEEEEEecCCCC
Q 003620 293 AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 293 vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~viVI~atn~~~ 355 (807)
.+..+....|.++++||.. ..++......+.+.+..+ ...+|.+||+++
T Consensus 101 ~laral~~~p~~lllDEPt----------~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDEAT----------SALDEESEDRLYQLLKEL----GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEECCc----------cccCHHHHHHHHHHHHHh----CCEEEEEeCChh
Confidence 6777778899999999943 333333444555555544 135566777754
No 498
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.97 E-value=4.5e-05 Score=85.22 Aligned_cols=151 Identities=26% Similarity=0.433 Sum_probs=92.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q 003620 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK- 281 (807)
Q Consensus 206 ~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~- 281 (807)
...++.|....++++++.+..-- .....|||+|++||||-++||+|=... +.+|+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45678999999999988875411 234579999999999999999996654 569999999665321
Q ss_pred ----hhc----hhHHHH---HHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhc-----ccC----
Q 003620 282 ----LAG----ESESNL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LKS---- 341 (807)
Q Consensus 282 ----~~g----~~~~~l---~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~~---- 341 (807)
..| ...... .-.|+.|.. ..||+|||..+... +...|+..+.. +.+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-----------~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-----------LQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-----------HHHHHHHHHHcCeeEecCCCccc
Confidence 111 111111 113444433 58999999876422 23345554432 111
Q ss_pred CceEEEEEecCCCCCCCHHhhccCccc-------eEEEeCCCChHHHHHH
Q 003620 342 RAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEV 384 (807)
Q Consensus 342 ~~~viVI~atn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~i 384 (807)
+..|-||++||.. +...+.. |+|- ..+.+..|...+|.+-
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred ceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchh
Confidence 2367899999974 2222221 2221 3456777777777653
No 499
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.96 E-value=5.2e-05 Score=90.79 Aligned_cols=152 Identities=24% Similarity=0.361 Sum_probs=89.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhhhhcCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh
Q 003620 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (807)
Q Consensus 204 ~~~~~~i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (807)
..+|+++.|.+..++++.+.+.... .....|||+|++||||+++|++|-... +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468889998888888766654422 234569999999999999999998765 36899999976532
Q ss_pred -----hhhchh----HHHHHHHHHHHHhcCCeEEEEccchhccCCCCCCchhHHHHHHHHHHHHhhccc-----C----C
Q 003620 281 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 342 (807)
Q Consensus 281 -----~~~g~~----~~~l~~vf~~a~~~~p~Il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 342 (807)
...|.. .......|+. .....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111211 0000001222 23468999999987532 3344555554211 0 1
Q ss_pred ceEEEEEecCCCCCCCHHhhccCccc-------eEEEeCCCChHHHHH
Q 003620 343 AHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (807)
Q Consensus 343 ~~viVI~atn~~~~ld~al~r~~rf~-------~~i~i~~P~~~~R~~ 383 (807)
..+-+|++|+.. +.. +...++|. ..+.+.+|...+|.+
T Consensus 456 ~~~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 256788888753 111 11112331 235666777767753
No 500
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=1.7e-05 Score=79.85 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.9
Q ss_pred cCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 003620 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+.+++-+.+.||+|||||||.|.|.+.+.
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 4567788899999999999999999998763
Done!