Query 003620
Match_columns 807
No_of_seqs 536 out of 5219
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 17:41:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003620.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1671-1674//hhsearch_pdb/003620hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 1120.9 51.2 798 8-807 3-806 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 914.6 39.9 795 8-807 3-806 (806)
3 3hu3_A Transitional endoplasmi 1.0 1 1 528.1 45.7 481 9-489 4-485 (489)
4 4b4t_J 26S protease regulatory 1.0 1 1 448.7 21.5 276 462-763 129-404 (405)
5 4b4t_I 26S protease regulatory 1.0 1 1 432.9 20.0 267 465-757 166-432 (437)
6 4b4t_L 26S protease subunit RP 1.0 1 1 430.3 24.0 272 464-761 164-435 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 428.0 21.8 268 471-764 199-467 (467)
8 4b4t_M 26S protease regulatory 1.0 1 1 426.5 24.8 264 465-754 165-428 (434)
9 4b4t_K 26S protease regulatory 1.0 1 1 424.4 20.8 265 470-760 161-427 (428)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 385.0 20.4 266 475-752 198-463 (806)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=1120.92 Aligned_cols=798 Identities=78% Similarity=1.240 Sum_probs=726.3
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEE
Q ss_conf 88888998620577611799973898024689971999799878651899999799970798608999982899899929
Q 003620 8 SDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKI 87 (807)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i 87 (807)
|.+...+.++.++|+++++.||+|+|+++.++++++|+|+|+.|..||+.+||+|.|+|+++..+++|+++..+++++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i 82 (806)
T 3cf2_A 3 SGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82 (806)
T ss_dssp ------------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEE
T ss_conf 87677888701666633689844897367788789899789999876999999899980797559999848888889979
Q ss_pred EECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEE
Q ss_conf 97496785148789995999956899988569842455656676545699997897641385424796999933742699
Q 003620 88 RMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVE 167 (807)
Q Consensus 88 ~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~ 167 (807)
+|++.+|.|+++.+||.|+|+++..++.+++|++.|...+..+..+..+..+++.+|....+||..|+.|.+...+..+.
T Consensus 83 ~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~ 162 (806)
T 3cf2_A 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVE 162 (806)
T ss_dssp EECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEE
T ss_pred EECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEE
T ss_conf 96899997669999798999989998867789993464002103345799999999875687246799899943885798
Q ss_pred EEEEEECCCCEEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEE
Q ss_conf 9999855995187679951885388876434-344798885555680999999999987534682456530998992399
Q 003620 168 FKVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGIL 246 (807)
Q Consensus 168 ~~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~Gl~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~iL 246 (807)
|+|++++|.++++++++|.|.+.+.+..... ....++++|+||||++++++.|++++.+|+++|++|..+++.+|+|||
T Consensus 163 f~V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GIL 242 (806)
T 3cf2_A 163 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGIL 242 (806)
T ss_dssp EEEEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEE
T ss_pred EEEEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEE
T ss_conf 99999857987698898379992666676653345899990351499999999999999875198988635899997589
Q ss_pred EECCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCHHHHH
Q ss_conf 98689997889999999982991899944356542101129999999999986299089981200005777787315788
Q 003620 247 LYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326 (807)
Q Consensus 247 L~GppGtGKTtLaraia~~l~~~~~~i~~~~l~~~~~g~~~~~i~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (807)
||||||||||+|++++|++++.+++.++++++.+++.|+++..++.+|+.|..+.||||||||+|.++++++...++..+
T Consensus 243 L~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~ 322 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322 (806)
T ss_dssp EECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCCHHHH
T ss_conf 77989998899999999971983999973795433316789999999999997299299985100233445778873999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 89999999762224786199998339999888786603864139993899767899999998648987884235688563
Q 003620 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (807)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 406 (807)
+++.+|+.+|+++..+.+|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.+++++++..++++..+|..
T Consensus 323 riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~ 402 (806)
T 3cf2_A 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp HHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99999999974666669879999669803269888578636168866897989999999998568998864389999975
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 07993788999999999998985033355431002466631012322567633115787774102320156652222212
Q 003620 407 THGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGL 486 (807)
Q Consensus 407 t~g~~g~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~ 486 (807)
|+||+++|+..+|++|++.++++..............+......++.+||..++....|+.+++...+.|++.|++++|+
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl 482 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL 482 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCH
T ss_conf 68998999999999999999984145120001332045522556519999999972878311234445788788881788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 46777667541277776123321056889975025899997159999999992890799837310001237716789999
Q 003620 487 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREI 566 (807)
Q Consensus 487 ~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i~i~~~~l~~~~vg~se~~i~~i 566 (807)
+++|+.|.+.+.||+++++.|.++++.+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~l 562 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHH
T ss_conf 99999999999756668999971488888607986687789639999999983896687424112103343689999999
Q ss_pred HHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99986099949999366301001499888999607999999972334888887389982279989899223598976205
Q 003620 567 FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 646 (807)
Q Consensus 567 f~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allr~gRf~~~ 646 (807)
|+.|+..+||||||||||++++.|+...++.++...+++++||++||++....+|+||||||+|+.||+|++||||||+.
T Consensus 563 F~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~ 642 (806)
T 3cf2_A 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCE
T ss_pred HHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEE
T ss_conf 99999729963520425677631588888986699999999999974878779989999379804389847177855079
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98069999999999999853699996002899999759999885999999999999999889879998741499744641
Q 003620 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDE 726 (807)
Q Consensus 647 i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 726 (807)
|+|++||.++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++.+................+.
T Consensus 643 i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~- 721 (806)
T 3cf2_A 643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAME- 721 (806)
T ss_dssp EEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC------------------
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 9979969999999999985679998778999999768999999999999999999999999856444333015741001-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC
Q ss_conf 1012335543488899998335899999999999999999810248986433344689876789999898-----99999
Q 003620 727 DAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRFAEAGTGATTGADPFSTS-----AGGAD 801 (807)
Q Consensus 727 ~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 801 (807)
....+..+.|+++||++|++.++||++++++++|++|.++|++++++|. |.|.....++......-+.. .....
T Consensus 722 ~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (806)
T 3cf2_A 722 VEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDN 800 (806)
T ss_dssp ------CCC----CCTTTC---------------CCCC------------------------------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 2334566864799999999867999999999999999999725367665-206887767778777888765445567787
Q ss_pred CCCCCC
Q ss_conf 999989
Q 003620 802 DDDLYS 807 (807)
Q Consensus 802 ~~~~~~ 807 (807)
+||||.
T Consensus 801 ~~~~~~ 806 (806)
T 3cf2_A 801 DDDLYG 806 (806)
T ss_dssp ------
T ss_pred CCCCCC
T ss_conf 666659
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=914.64 Aligned_cols=795 Identities=79% Similarity=1.258 Sum_probs=708.8
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEE
Q ss_conf 88888998620577611799973898024689971999799878651899999799970798608999982899899929
Q 003620 8 SDANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKI 87 (807)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i 87 (807)
+++.+++.++.++|++++|.|++|+|+++.+++.++|+|+|+.|..||+.+||+|.|+|++++.+++.+|+...++.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (806)
T 1ypw_A 3 SGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKI 82 (806)
T ss_dssp --------------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEE
T ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEE
T ss_conf 76434566410467742578845897267677688798889999975999998899936865737999964788899869
Q ss_pred EECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEE
Q ss_conf 97496785148789995999956899988569842455656676545699997897641385424796999933742699
Q 003620 88 RMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVE 167 (807)
Q Consensus 88 ~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~ 167 (807)
+|++.+|.|+|+.+||.|+|+++..++++++|++.|...++.++.+.++..+++++|....+|+.+|+.+.+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (806)
T 1ypw_A 83 RMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVE 162 (806)
T ss_dssp ECCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEE
T ss_pred EECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEE
T ss_conf 96489996639888998999988778757689980786522211550678999998600783226898799547876057
Q ss_pred EEEEEECCCCEEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEE
Q ss_conf 9999855995187679951885388876434-344798885555680999999999987534682456530998992399
Q 003620 168 FKVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGIL 246 (807)
Q Consensus 168 ~~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~Gl~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~iL 246 (807)
|+|+.++|.++++++++|.+.+...+..+.. ....+.++|++|+|++++++.|++++.+|+.+|++|.++++.++.++|
T Consensus 163 ~~v~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vL 242 (806)
T 1ypw_A 163 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGIL 242 (806)
T ss_dssp EEEEEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEE
T ss_pred EEEEECCCCCCCEECCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEE
T ss_conf 78873368887332688699855865541122113578998882880999999999999874298999863889997389
Q ss_pred EECCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCHHHHH
Q ss_conf 98689997889999999982991899944356542101129999999999986299089981200005777787315788
Q 003620 247 LYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 326 (807)
Q Consensus 247 L~GppGtGKTtLaraia~~l~~~~~~i~~~~l~~~~~g~~~~~i~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (807)
|+||||||||+++++++++++..++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|+++++++...++...
T Consensus 243 L~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 322 (806)
T 1ypw_A 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322 (806)
T ss_dssp ECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCHHHH
T ss_conf 98939998799999999971996899975576544101589999999999986499579830077751114666316889
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 89999999762224786199998339999888786603864139993899767899999998648987884235688563
Q 003620 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (807)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~ 406 (807)
++..+|+.++++...+..++++++||+++.+++++++++||+..+.++.|+.++|.+|++.+.+++.+..+.++..++..
T Consensus 323 ~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~ 402 (806)
T 1ypw_A 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp HHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 99999999865411466178760239810049998646554443556999999999999998733877622006777776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCH
Q ss_conf 07993788999999999998985033355431002466631012322567633115787774102320156652222212
Q 003620 407 THGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGL 486 (807)
Q Consensus 407 t~g~~g~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~ 486 (807)
++||+++++..++++++..++++..............+......++..++..++....|+..++...+.+.+.|++++|+
T Consensus 403 t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl 482 (806)
T 1ypw_A 403 THGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGL 482 (806)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 14753689999999999998764201011554201012444555556653111123571444200025754211112443
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 46777667541277776123321056889975025899997159999999992890799837310001237716789999
Q 003620 487 ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREI 566 (807)
Q Consensus 487 ~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i~i~~~~l~~~~vg~se~~i~~i 566 (807)
+.+|+.|.+.+.++..+++.+..+++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+
T Consensus 483 ~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~ 562 (806)
T 1ypw_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREI 562 (806)
T ss_dssp CCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHH
T ss_conf 02222189999755536398975488877536897799987899999999984898799861676553057547889999
Q ss_pred HHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99986099949999366301001499888999607999999972334888887389982279989899223598976205
Q 003620 567 FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQL 646 (807)
Q Consensus 567 f~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allr~gRf~~~ 646 (807)
|+.++...|||+||||||++...|+...++..+...+++++||++||+.....+++||+|||+|+.||+|++|||||++.
T Consensus 563 f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~ 642 (806)
T 1ypw_A 563 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 642 (806)
T ss_dssp HHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSC
T ss_pred HHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCE
T ss_conf 99987069859999874454211268777764168999999999875456668769998438712279878376556730
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98069999999999999853699996002899999759999885999999999999999889879998741499744641
Q 003620 647 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDE 726 (807)
Q Consensus 647 i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 726 (807)
|+|++|+.++|.+||+.++++.++..++++..+++.++||||++|.++|++|++.|+++.+...+............+..
T Consensus 643 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 722 (806)
T 1ypw_A 643 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEV 722 (806)
T ss_dssp CCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC--------------------
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 55599799999999999864599975227999997350059999999999999999999999877665430146431233
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC-----
Q ss_conf 1012335543488899998335899999999999999999810248986433344689876789999898---99-----
Q 003620 727 DAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIGSEFRFAEAGTGATTGADPFSTS---AG----- 798 (807)
Q Consensus 727 ~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 798 (807)
........|+++||+.|++.++||+++++++.|++|.+++++++++|. |.|...+.| |.-|..-+ .|
T Consensus 723 -~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 797 (806)
T 1ypw_A 723 -EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQG---GAGPSQGSGGGTGGSVYT 797 (806)
T ss_dssp -----CCTTTTTTSSCCCCCC-----------------------------------------------------------
T ss_pred -CCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCCCCC---CCCCCCCCCCCCCCCCCC
T ss_conf -434666760799999999867899999999999999999976325776-106876665---677889999988887777
Q ss_pred CCCCCCCCC
Q ss_conf 999999989
Q 003620 799 GADDDDLYS 807 (807)
Q Consensus 799 ~~~~~~~~~ 807 (807)
..+||++|+
T Consensus 798 ~~~~~~~~~ 806 (806)
T 1ypw_A 798 EDNDDDLYG 806 (806)
T ss_dssp ---------
T ss_pred CCCCHHHCC
T ss_conf 664212019
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=1.00 E-value=1 Score=528.08 Aligned_cols=481 Identities=78% Similarity=1.257 Sum_probs=441.0
Q ss_pred CCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEE
Q ss_conf 88889986205776117999738980246899719997998786518999997999707986089999828998999299
Q 003620 9 DANSGKKDYSTAILERKKSPNRLVVDEAINDDNSVVGLHPDTMDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIR 88 (807)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~~~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~ 88 (807)
+...++.++.++|++++|.||+|+|+++.+++.++|||+|+.|..||+..||+|.|+|++++.++||+||..+++++.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~ 83 (489)
T 3hu3_A 4 GADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIR 83 (489)
T ss_dssp -------------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEE
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEE
T ss_conf 53112565111445425688725975677776878998999999769999998999268667379999507878999799
Q ss_pred ECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEE
Q ss_conf 74967851487899959999568999885698424556566765456999978976413854247969999337426999
Q 003620 89 MNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEF 168 (807)
Q Consensus 89 ~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~~ 168 (807)
|++.+|.|+|+++||+|+|+++..++++++|++.|+...+.......++.+.+++.....+++..|+.+.+.+..+.+.|
T Consensus 84 ~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (489)
T 3hu3_A 84 MNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEF 163 (489)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEE
T ss_pred ECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEE
T ss_conf 56899965398899989999888887467899837986523245305788867877405842036888996578846879
Q ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCEEEE
Q ss_conf 9998559951876799518853888764343-447988855556809999999999875346824565309989923999
Q 003620 169 KVIETDPGEYCVVAPDTEIFCEGEPIKREDE-DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (807)
Q Consensus 169 ~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~-~~~~~~~~~~i~Gl~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~iLL 247 (807)
+++...|...+.++++|.+.+.+.+...... .....+.|++++|++++++.|++++.+++.+|++|..++..++.++||
T Consensus 164 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL 243 (489)
T 3hu3_A 164 KVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILL 243 (489)
T ss_dssp EEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEE
T ss_pred EEEEECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEE
T ss_conf 99841378866976881899736765544433345789988808979999999999998855989998649999975899
Q ss_pred ECCCCCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCHHHHHH
Q ss_conf 86899978899999999829918999443565421011299999999999862990899812000057777873157888
Q 003620 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 248 ~GppGtGKTtLaraia~~l~~~~~~i~~~~l~~~~~g~~~~~i~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
+||||||||++++++++.++.+++.++|.++.+.+.|+.+..++.+|+.+....|++|||||+|.+.++++...++...+
T Consensus 244 ~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 244 YGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCHHHHH
T ss_conf 99699899999999999869988999745765442132678999999999963990899646555234554454257899
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf 99999997622247861999983399998887866038641399938997678999999986489878842356885630
Q 003620 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 407 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~viVI~atn~~~~ld~al~r~~rf~~~i~i~~p~~~~r~~Il~~~~~~~~~~~~~~l~~la~~t 407 (807)
+..+|+..|++......++||++||+++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t 403 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANET 403 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 99999987531246786699985488322698782777674699827979999999999998418986213399999975
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 79937889999999999989850333554310024666310123225676331157877741023201566522222124
Q 003620 408 HGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLE 487 (807)
Q Consensus 408 ~g~~g~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~ 487 (807)
+||+++|+..+|++|+..++++....+.........+......++.+||..+++.++|+.+++..+++|+++|+||||..
T Consensus 404 ~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 404 HGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 69769999999999999999730233553201255233046767899999999767742410134317998897718976
Q ss_pred HH
Q ss_conf 67
Q 003620 488 NV 489 (807)
Q Consensus 488 ~v 489 (807)
.-
T Consensus 484 ~~ 485 (489)
T 3hu3_A 484 HH 485 (489)
T ss_dssp --
T ss_pred CC
T ss_conf 55
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=448.74 Aligned_cols=276 Identities=38% Similarity=0.687 Sum_probs=252.7
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 57877741023201566522222124677766754127777612332105688997502589999715999999999289
Q 003620 462 TSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 541 (807)
Q Consensus 462 ~~~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~ 541 (807)
...|........+.|+++|+||+|++++|+.|++.+.+|+++|+.|.++|+.+++|+|||||||||||++|+++|++++.
T Consensus 129 ~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 129 KADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 65846661355579999888828889999999999999874999998679998882588589999878999999985188
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 07998373100012377167899999998609994999936630100149988899960799999997233488888738
Q 003620 542 NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 621 (807)
Q Consensus 542 ~~i~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v 621 (807)
+|+.++++++.++|+|++++.++.+|..|+..+||||||||||++++.|+...+..+....+++++||++||++....++
T Consensus 209 ~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 209 KFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred CCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 85288868951133546899999999999870994676533411115778889997689999999999960433888875
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99822799898992235989762059806999999999999985369999600289999975999988599999999999
Q 003620 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 622 ~vi~tTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~ 701 (807)
+||||||+|+.||||++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|+|||||||.++|++|++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 78812698144899672877676699769969999999999985599999657999999877999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99998898799987414997446411012335543488899998335899999999999999
Q 003620 702 AIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAF 763 (807)
Q Consensus 702 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~ 763 (807)
|+++. ...|+++||+.|+.++.++.....+..++.|
T Consensus 369 Air~~--------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 369 ALRER--------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHTT--------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHCC--------------------------CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99869--------------------------9875999999999998572655540267641
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.92 Aligned_cols=267 Identities=36% Similarity=0.652 Sum_probs=247.0
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 77741023201566522222124677766754127777612332105688997502589999715999999999289079
Q 003620 465 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (807)
Q Consensus 465 ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i 544 (807)
|....-...+.|+++|+||+|++++|+.|.+.+.+|+++++.|..+++.+++|+|||||||||||++|+++|++++.+|+
T Consensus 166 ~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 166 PMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp CCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 74525543368998600557699999999999999876999998679997778844889996399999999998599879
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 98373100012377167899999998609994999936630100149988899960799999997233488888738998
Q 003620 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 545 ~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi 624 (807)
.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|+.+....+....+++++||++||+.....+++||
T Consensus 246 ~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVI 325 (437)
T 4b4t_I 246 RIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVI 325 (437)
T ss_dssp EEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEE
T ss_pred EEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98879953144766999999999999865991898761222036677888776589999999999972476788997999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22799898992235989762059806999999999999985369999600289999975999988599999999999999
Q 003620 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 625 ~tTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~ 704 (807)
+|||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++|+..+|+.|+|||||||.++|++|++.|++
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 95798055599886488602799808969999999999996489999767999999767999899999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 98898799987414997446411012335543488899998335899999999
Q 003620 705 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADI 757 (807)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~ 757 (807)
+. ...|+++||+.|+..+.++.+.+.+
T Consensus 406 ~~--------------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 406 ER--------------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp TT--------------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred CC--------------------------CCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf 48--------------------------9966999999999987079873347
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.30 Aligned_cols=272 Identities=40% Similarity=0.669 Sum_probs=251.4
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 87774102320156652222212467776675412777761233210568899750258999971599999999928907
Q 003620 464 NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (807)
Q Consensus 464 ~ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~ 543 (807)
.|........+.|+++|+||+|++++|+.|.+.+.+|+++++.|..+|+.+++|+|||||||||||++|+++|++++.+|
T Consensus 164 d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCHHHEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 74233013315999896671785999999999999987499999867989787699989999849999999999859998
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 99837310001237716789999999860999499993663010014998889996079999999723348888873899
Q 003620 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 544 i~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~v 623 (807)
+.++++++.++|+|++++.++.+|..|+...||||||||+|++++.|+......+....+++++||++||++....+++|
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred EEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99841462055201789999999999986389646420443333333447887536899999999998346667798699
Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 82279989899223598976205980699999999999998536999960028999997599998859999999999999
Q 003620 624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 624 i~tTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~ 703 (807)
|+|||+|+.||||++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.|+|||||||.++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99339903318978277710200135996999999999998658999864589999976899999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 9988987999874149974464110123355434888999983358999999999999
Q 003620 704 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQ 761 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~ 761 (807)
++. ...|+++||..|+.++.++...+....|+
T Consensus 404 r~~--------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 404 RDD--------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp HTT--------------------------CSSBCHHHHHHHHHHHHHTCC--------
T ss_pred HCC--------------------------CCCCCHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 869--------------------------98779999999999987503701235642
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=428.01 Aligned_cols=268 Identities=34% Similarity=0.661 Sum_probs=246.1
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 23201566522222124677766754127777612332105688997502589999715999999999289079983731
Q 003620 471 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i~i~~~~ 550 (807)
...+.|+++|+||+|++++|+.|++.+.+|+.+++.|.++|+.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred EECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 01579999878854599999999999998842999998779999981476489998099999999844689869988699
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 00012377167899999998609994999936630100149988899960799999997233488888738998227998
Q 003620 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 551 l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi~tTn~~ 630 (807)
+.++|+|++++.++.+|..|+..+||||||||+|.++..|+...........++++++|++||+.....+++||+|||+|
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 50266778999999999998761784675223211013556767786278999999999986555788837988287893
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98992235989762059806999999999999985369999600289999975999988599999999999999988987
Q 003620 631 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 710 (807)
Q Consensus 631 ~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 710 (807)
+.||+|++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+|||||||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 1179546366655079983896999999999998548999877799999977799999999999999999999838----
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 9998741499744641101233554348889999833589999-99999999999
Q 003620 711 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVS-DADIRKYQAFA 764 (807)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~-~~~~~~y~~~~ 764 (807)
...|+++||+.|+.++.++.. .+...+|.+|.
T Consensus 435 ----------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ----------------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ----------------------CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf ----------------------876699999999999964745612578998619
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=426.49 Aligned_cols=264 Identities=38% Similarity=0.651 Sum_probs=245.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 77741023201566522222124677766754127777612332105688997502589999715999999999289079
Q 003620 465 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (807)
Q Consensus 465 ps~~~~~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i 544 (807)
|........+.|+++|+||+|++++|+.|.+.+.+|+++++.|.++|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 31343266889799867609579999999999999974999998679998872687794999889999999999599889
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 98373100012377167899999998609994999936630100149988899960799999997233488888738998
Q 003620 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 545 ~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi 624 (807)
.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|+.+.........+++++||++||++....+|+||
T Consensus 245 ~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred EEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98644643134563899999999999861990896033256652257788887469999999999971366888998999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22799898992235989762059806999999999999985369999600289999975999988599999999999999
Q 003620 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 625 ~tTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~ 704 (807)
||||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+|||||||.++|++|++.|++
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94899223399671577403899808959999999999985689998767999999868998999999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 98898799987414997446411012335543488899998335899999
Q 003620 705 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSD 754 (807)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~ 754 (807)
+. ...|+++||..|+..++|+.+.
T Consensus 405 ~~--------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 405 NG--------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HT--------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred CC--------------------------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf 69--------------------------9876999999999997377775
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.44 Aligned_cols=265 Identities=40% Similarity=0.655 Sum_probs=247.3
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECC
Q ss_conf 02320156652222212467776675412777761233210568899750258999971599999999928907998373
Q 003620 470 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (807)
Q Consensus 470 ~~~~~~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i~i~~~ 549 (807)
-...+.|+++|+||+|++.+|+.|.+.+.+|+++++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 26778999988885169999999999999987399999867999886588889899888999999999867996999330
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 10001237716789999999860999499993663010014998889996079999999723348888873899822799
Q 003620 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi~tTn~ 629 (807)
++.++|+|++++.++.+|..|+..+|||+||||+|++++.|+......+....+++++||++|||+....+++||+|||+
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 44314546059999999999997399746300224330355678788871899999999998438787799799996198
Q ss_pred CCCCCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898992235989762059806-9999999999999853699996002899999759999885999999999999999889
Q 003620 630 PDIIDPALLRPGRLDQLIYIP-LPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allr~gRf~~~i~~~-~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~ 708 (807)
|+.||||++||||||+.|+|| +|+.++|..||+.+++++++..++|+..+|..|+|||||||.++|++|++.|+++.
T Consensus 321 ~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-- 398 (428)
T 4b4t_K 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-- 398 (428)
T ss_dssp SSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--
T ss_conf 155696663687515999819999999999999998557999963589999977799889999999999999999879--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf 879998741499744641101233554348889999833-5899999999999
Q 003620 709 KDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF-ARRSVSDADIRKY 760 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~-~~~s~~~~~~~~y 760 (807)
...|+++||+.|+.. ++++.+.+++++|
T Consensus 399 ------------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 ------------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp ------------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred ------------------------CCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf ------------------------98779999999999761766895475541
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=384.97 Aligned_cols=266 Identities=38% Similarity=0.663 Sum_probs=239.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCC
Q ss_conf 15665222221246777667541277776123321056889975025899997159999999992890799837310001
Q 003620 475 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~vk~~l~~~~~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakalA~~~~~~~i~i~~~~l~~~ 554 (807)
.|.+.|+||+|++++++.|++.+.+|+++++.|..++..+++|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHCC
T ss_conf 89999035149999999999999987519898863589999758977989998899999999971983999973795433
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 23771678999999986099949999366301001499888999607999999972334888887389982279989899
Q 003620 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~if~~a~~~~p~ii~iDEid~l~~~r~~~~~~~~~~~~~v~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 634 (807)
|+|++++.++.+|+.|+..+||||||||||++++.|+... +....+++++||.+||++....+|+||+|||+|+.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC
T ss_conf 3167899999999999972992999851002334457788---7399999999999974666669879999669803269
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22359897620598069999999999999853699996002899999759999885999999999999999889879998
Q 003620 635 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allr~gRf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~d~~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~ 714 (807)
++++|||||++.|+++.||.++|.+||+.++++.++..++++..+|..|.||+|+||.++|++|++.|+++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 888578636168866897989999999998568998864389999975689989999999999999999841451200--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 74149974464110123355434888999983358999
Q 003620 715 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSV 752 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~ 752 (807)
. .............|+++||..|+..++|+-
T Consensus 433 ---~----~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 433 ---E----DETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp ---T----CCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ---C----CCCCCHHHHCCCEEEHHHHHHHHHHCCCCC
T ss_conf ---0----133204552255651999999997287831
Done!