Query 003623
Match_columns 807
No_of_seqs 726 out of 5179
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 1E-119 2E-124 989.1 51.5 690 15-765 2-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 2E-114 3E-119 931.5 50.3 556 203-771 185-793 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 2E-100 4E-105 914.2 73.8 722 30-768 3-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 6.6E-85 1.4E-89 718.8 52.4 614 134-767 304-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 7E-73 1.5E-77 617.7 57.5 499 240-770 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 6.6E-67 1.4E-71 601.4 44.6 489 226-762 2-492 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 5.4E-62 1.2E-66 516.9 41.5 599 31-662 11-683 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.1E-59 4.5E-64 481.1 24.2 253 472-749 142-394 (406)
9 KOG0738 AAA+-type ATPase [Post 100.0 5.9E-55 1.3E-59 449.8 21.4 284 471-767 202-489 (491)
10 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-50 3E-55 416.1 26.6 246 201-463 144-392 (406)
11 KOG0739 AAA+-type ATPase [Post 100.0 2.6E-50 5.5E-55 401.5 17.0 293 471-769 123-438 (439)
12 KOG0728 26S proteasome regulat 100.0 4.8E-48 1E-52 376.5 19.7 256 474-754 140-395 (404)
13 KOG0727 26S proteasome regulat 100.0 4.5E-48 9.7E-53 377.1 19.3 249 474-747 148-396 (408)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 3.1E-45 6.7E-50 411.0 39.3 398 301-765 81-483 (489)
15 KOG0734 AAA+-type ATPase conta 100.0 1.6E-47 3.5E-52 407.2 17.8 244 475-747 298-541 (752)
16 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-46 3E-51 406.2 25.0 271 196-467 499-773 (802)
17 KOG0730 AAA+-type ATPase [Post 100.0 2.2E-46 4.7E-51 411.7 24.3 252 201-467 427-678 (693)
18 KOG0729 26S proteasome regulat 100.0 1.2E-46 2.6E-51 369.7 17.7 267 464-763 160-426 (435)
19 KOG0726 26S proteasome regulat 100.0 1.1E-46 2.4E-51 374.3 14.8 248 475-747 179-426 (440)
20 KOG0652 26S proteasome regulat 100.0 3.3E-46 7.2E-51 365.6 16.7 250 474-748 164-413 (424)
21 KOG0737 AAA+-type ATPase [Post 100.0 9.6E-44 2.1E-48 368.4 20.3 287 477-768 88-382 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 9.8E-44 2.1E-48 403.2 21.9 249 476-750 306-556 (774)
23 PTZ00454 26S protease regulato 100.0 2.8E-43 6.1E-48 387.7 22.5 253 473-750 137-389 (398)
24 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-43 1.5E-47 342.7 16.6 245 475-752 115-360 (368)
25 KOG0736 Peroxisome assembly fa 100.0 4.9E-42 1.1E-46 379.8 23.9 268 200-468 664-937 (953)
26 COG0465 HflB ATP-dependent Zn 100.0 2.5E-42 5.4E-47 386.4 19.0 247 475-747 144-390 (596)
27 PRK03992 proteasome-activating 100.0 1.8E-41 3.9E-46 375.9 22.5 258 472-754 122-379 (389)
28 KOG0741 AAA+-type ATPase [Post 100.0 7.4E-42 1.6E-46 363.7 15.3 278 473-761 211-506 (744)
29 PTZ00361 26 proteosome regulat 100.0 6E-41 1.3E-45 370.9 20.7 250 474-748 176-425 (438)
30 KOG0738 AAA+-type ATPase [Post 100.0 2.6E-40 5.6E-45 341.6 22.6 265 201-468 205-474 (491)
31 KOG0652 26S proteasome regulat 100.0 1.7E-39 3.6E-44 318.5 22.1 273 174-463 131-412 (424)
32 KOG0727 26S proteasome regulat 100.0 1.2E-39 2.6E-44 318.2 20.9 246 201-463 148-396 (408)
33 KOG0740 AAA+-type ATPase [Post 100.0 1.8E-40 3.9E-45 357.3 16.3 279 472-768 144-425 (428)
34 COG1223 Predicted ATPase (AAA+ 100.0 1.5E-38 3.3E-43 312.2 27.2 305 133-464 50-356 (368)
35 KOG0728 26S proteasome regulat 100.0 2.6E-39 5.6E-44 315.5 20.5 246 201-463 140-388 (404)
36 KOG0726 26S proteasome regulat 100.0 8.7E-40 1.9E-44 325.2 15.7 246 201-463 178-426 (440)
37 KOG0734 AAA+-type ATPase conta 100.0 6.2E-39 1.3E-43 341.8 21.3 227 202-429 298-524 (752)
38 KOG0651 26S proteasome regulat 100.0 6.8E-40 1.5E-44 329.8 12.4 248 475-747 126-373 (388)
39 KOG0732 AAA+-type ATPase conta 100.0 1.6E-38 3.5E-43 369.1 23.0 387 203-590 260-669 (1080)
40 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-38 4.1E-43 364.0 22.6 249 474-748 48-296 (495)
41 KOG0729 26S proteasome regulat 100.0 1.5E-38 3.3E-43 312.7 18.3 244 202-463 171-418 (435)
42 KOG0735 AAA+-type ATPase [Post 100.0 3.6E-38 7.9E-43 345.8 23.1 230 203-432 662-891 (952)
43 TIGR03689 pup_AAA proteasome A 100.0 4.8E-38 1E-42 351.9 22.4 251 473-746 174-477 (512)
44 TIGR01242 26Sp45 26S proteasom 100.0 9.5E-38 2.1E-42 345.2 22.2 250 473-747 114-363 (364)
45 CHL00176 ftsH cell division pr 100.0 4.5E-37 9.8E-42 355.5 22.3 246 476-747 178-423 (638)
46 PTZ00454 26S protease regulato 100.0 1.2E-35 2.5E-40 327.4 25.8 246 201-463 138-386 (398)
47 KOG0739 AAA+-type ATPase [Post 100.0 3.8E-36 8.2E-41 300.3 17.4 227 202-431 127-355 (439)
48 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-35 2.8E-40 308.0 20.4 228 203-432 87-317 (386)
49 KOG0731 AAA+-type ATPase conta 100.0 2.1E-35 4.5E-40 335.5 22.9 228 203-431 306-538 (774)
50 PRK10733 hflB ATP-dependent me 100.0 2.2E-35 4.8E-40 345.9 22.1 247 477-749 148-394 (644)
51 KOG0732 AAA+-type ATPase conta 100.0 6.6E-36 1.4E-40 347.3 17.2 267 475-753 259-531 (1080)
52 CHL00206 ycf2 Ycf2; Provisiona 100.0 2E-35 4.3E-40 355.5 20.5 198 500-706 1615-1861(2281)
53 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-34 6E-39 344.2 26.7 266 203-468 448-715 (733)
54 PRK03992 proteasome-activating 100.0 5.5E-34 1.2E-38 316.2 25.2 250 202-468 125-377 (389)
55 PTZ00361 26 proteosome regulat 100.0 5.9E-34 1.3E-38 315.3 23.6 246 201-463 176-424 (438)
56 COG0464 SpoVK ATPases of the A 100.0 8.2E-34 1.8E-38 326.9 25.7 249 202-466 236-486 (494)
57 TIGR02639 ClpA ATP-dependent C 100.0 2.1E-32 4.6E-37 326.7 34.5 435 205-707 179-716 (731)
58 PLN00020 ribulose bisphosphate 100.0 3.1E-33 6.6E-38 293.4 23.5 218 479-704 113-353 (413)
59 PRK11034 clpA ATP-dependent Cl 100.0 1.6E-31 3.4E-36 314.4 34.4 447 206-707 184-720 (758)
60 COG0465 HflB ATP-dependent Zn 100.0 6.1E-33 1.3E-37 311.1 20.3 229 203-432 145-376 (596)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-31 4E-36 299.9 25.9 242 203-467 223-467 (489)
62 TIGR01242 26Sp45 26S proteasom 100.0 3.5E-31 7.7E-36 292.8 25.2 245 201-462 115-362 (364)
63 KOG0651 26S proteasome regulat 100.0 1.9E-32 4E-37 276.3 13.2 229 201-429 125-356 (388)
64 TIGR01241 FtsH_fam ATP-depende 100.0 4.6E-31 1E-35 303.0 24.3 244 202-463 49-295 (495)
65 TIGR03689 pup_AAA proteasome A 100.0 1.1E-30 2.5E-35 292.6 22.4 221 201-427 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 5.4E-30 1.2E-34 296.7 23.2 243 203-463 178-423 (638)
67 KOG0740 AAA+-type ATPase [Post 100.0 2E-29 4.3E-34 272.0 18.2 261 201-468 146-409 (428)
68 TIGR03345 VI_ClpV1 type VI sec 100.0 8.5E-28 1.9E-32 288.5 33.6 454 204-707 183-835 (852)
69 CHL00095 clpC Clp protease ATP 100.0 5E-28 1.1E-32 292.3 28.9 453 206-707 177-786 (821)
70 PLN00020 ribulose bisphosphate 100.0 1.8E-28 3.8E-33 257.7 21.4 217 206-427 113-352 (413)
71 PRK10733 hflB ATP-dependent me 100.0 3.3E-28 7.1E-33 285.5 24.1 242 205-464 149-393 (644)
72 PRK10865 protein disaggregatio 100.0 3.5E-27 7.7E-32 284.2 33.3 452 205-707 175-833 (857)
73 TIGR03346 chaperone_ClpB ATP-d 100.0 6.5E-27 1.4E-31 283.4 34.5 454 206-708 171-831 (852)
74 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.2E-28 4.8E-33 295.2 21.1 199 227-431 1615-1862(2281)
75 COG0542 clpA ATP-binding subun 99.9 1.2E-26 2.7E-31 266.4 23.8 453 206-707 168-759 (786)
76 KOG0744 AAA+-type ATPase [Post 99.9 4.2E-24 9.1E-29 216.9 10.4 239 479-746 140-413 (423)
77 KOG0743 AAA+-type ATPase [Post 99.9 6.1E-23 1.3E-27 219.7 16.5 228 471-708 192-429 (457)
78 CHL00181 cbbX CbbX; Provisiona 99.9 6.5E-22 1.4E-26 210.1 16.3 216 480-708 22-260 (287)
79 TIGR02880 cbbX_cfxQ probable R 99.9 1.8E-21 3.8E-26 207.1 14.6 212 482-706 23-257 (284)
80 PF00004 AAA: ATPase family as 99.9 1.6E-21 3.4E-26 183.7 12.6 130 518-651 1-132 (132)
81 TIGR02881 spore_V_K stage V sp 99.9 3E-21 6.6E-26 203.8 16.1 214 480-707 5-243 (261)
82 KOG0742 AAA+-type ATPase [Post 99.8 1.7E-20 3.7E-25 195.5 15.3 184 512-702 381-592 (630)
83 PF00004 AAA: ATPase family as 99.8 3.6E-19 7.9E-24 167.5 15.0 130 245-375 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 1.9E-17 4.1E-22 176.1 20.7 212 208-430 23-258 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 2.5E-17 5.3E-22 175.4 18.6 211 209-429 23-256 (284)
86 TIGR02881 spore_V_K stage V sp 99.7 7.6E-17 1.6E-21 170.3 19.4 176 207-393 5-195 (261)
87 PF05496 RuvB_N: Holliday junc 99.7 2.1E-17 4.5E-22 164.2 13.8 189 477-698 20-225 (233)
88 TIGR02639 ClpA ATP-dependent C 99.7 2.5E-17 5.3E-22 197.5 17.0 250 478-774 179-459 (731)
89 TIGR00763 lon ATP-dependent pr 99.7 4.2E-17 9.2E-22 196.5 16.2 203 481-704 320-556 (775)
90 KOG0744 AAA+-type ATPase [Post 99.7 2.7E-17 5.9E-22 167.7 10.3 149 240-390 175-341 (423)
91 PRK00080 ruvB Holliday junctio 99.7 6.3E-16 1.4E-20 168.9 20.1 234 477-768 21-274 (328)
92 TIGR00635 ruvB Holliday juncti 99.7 7E-16 1.5E-20 167.2 20.1 191 479-702 2-209 (305)
93 KOG0742 AAA+-type ATPase [Post 99.7 3.9E-16 8.5E-21 163.2 16.8 178 240-422 382-588 (630)
94 PRK11034 clpA ATP-dependent Cl 99.7 4.4E-16 9.6E-21 184.2 16.1 198 479-701 184-408 (758)
95 PF05496 RuvB_N: Holliday junc 99.7 1.5E-15 3.2E-20 151.1 16.5 181 201-410 17-214 (233)
96 KOG0743 AAA+-type ATPase [Post 99.7 8.9E-16 1.9E-20 165.0 15.7 201 206-416 199-410 (457)
97 COG2255 RuvB Holliday junction 99.6 5.8E-15 1.3E-19 149.0 18.1 233 477-767 22-274 (332)
98 COG2256 MGS1 ATPase related to 99.6 3.8E-15 8.2E-20 157.5 16.6 175 477-696 20-211 (436)
99 COG0466 Lon ATP-dependent Lon 99.6 2.7E-15 5.8E-20 168.4 16.4 203 481-713 323-552 (782)
100 KOG1051 Chaperone HSP104 and r 99.6 1E-13 2.2E-18 162.5 29.6 159 210-391 189-365 (898)
101 KOG2004 Mitochondrial ATP-depe 99.6 2.4E-15 5.1E-20 167.6 15.0 165 481-666 411-597 (906)
102 PRK05342 clpX ATP-dependent pr 99.6 2.1E-14 4.5E-19 159.3 17.7 223 482-706 72-382 (412)
103 TIGR00763 lon ATP-dependent pr 99.6 2.4E-14 5.2E-19 172.7 18.2 164 208-389 320-505 (775)
104 TIGR00390 hslU ATP-dependent p 99.6 1.7E-14 3.7E-19 156.3 14.9 176 482-661 13-342 (441)
105 COG2255 RuvB Holliday junction 99.6 5.6E-14 1.2E-18 142.0 16.7 191 201-421 19-226 (332)
106 PRK12323 DNA polymerase III su 99.6 2.2E-14 4.7E-19 162.7 15.1 186 477-700 12-231 (700)
107 PRK10787 DNA-binding ATP-depen 99.6 7.3E-14 1.6E-18 166.8 20.2 204 481-706 322-559 (784)
108 PRK10865 protein disaggregatio 99.6 1.7E-14 3.8E-19 174.7 14.2 165 478-668 175-357 (857)
109 TIGR03345 VI_ClpV1 type VI sec 99.6 1.7E-14 3.7E-19 174.1 13.8 184 477-686 183-389 (852)
110 PRK05201 hslU ATP-dependent pr 99.6 2.2E-14 4.7E-19 155.6 12.9 176 482-661 16-344 (443)
111 TIGR02928 orc1/cdc6 family rep 99.6 7.2E-14 1.6E-18 155.5 17.4 202 481-705 15-257 (365)
112 PRK00080 ruvB Holliday junctio 99.6 2.2E-13 4.7E-18 149.0 20.6 192 201-422 18-226 (328)
113 TIGR02902 spore_lonB ATP-depen 99.6 5.3E-14 1.1E-18 162.2 16.5 210 477-746 61-331 (531)
114 TIGR00635 ruvB Holliday juncti 99.5 2.3E-13 5E-18 147.5 20.3 187 206-422 2-205 (305)
115 TIGR00382 clpX endopeptidase C 99.5 8.8E-14 1.9E-18 153.4 16.6 223 482-706 78-388 (413)
116 PRK07003 DNA polymerase III su 99.5 1.3E-13 2.7E-18 158.4 18.2 186 477-700 12-226 (830)
117 PRK14956 DNA polymerase III su 99.5 5.9E-14 1.3E-18 155.9 14.9 181 477-695 14-223 (484)
118 PRK00411 cdc6 cell division co 99.5 1.3E-13 2.8E-18 155.1 18.0 203 481-705 30-265 (394)
119 COG2256 MGS1 ATPase related to 99.5 1.6E-13 3.5E-18 145.3 16.6 175 201-413 17-208 (436)
120 PRK07940 DNA polymerase III su 99.5 6.5E-14 1.4E-18 154.7 14.1 187 479-696 3-216 (394)
121 PRK00149 dnaA chromosomal repl 99.5 8.5E-14 1.8E-18 158.6 15.2 173 515-703 148-331 (450)
122 PRK13342 recombination factor 99.5 2.2E-13 4.8E-18 153.3 18.3 180 478-699 9-201 (413)
123 TIGR00362 DnaA chromosomal rep 99.5 1.2E-13 2.7E-18 155.4 15.9 172 515-703 136-319 (405)
124 TIGR03346 chaperone_ClpB ATP-d 99.5 7.2E-14 1.6E-18 170.1 13.8 183 478-686 170-375 (852)
125 PRK14961 DNA polymerase III su 99.5 4.3E-13 9.4E-18 148.3 18.8 185 477-699 12-225 (363)
126 PRK14962 DNA polymerase III su 99.5 5.8E-13 1.2E-17 150.6 19.7 171 477-684 10-209 (472)
127 CHL00095 clpC Clp protease ATP 99.5 7.5E-14 1.6E-18 169.5 13.1 185 478-688 176-382 (821)
128 PRK04195 replication factor C 99.5 2.5E-13 5.5E-18 155.8 15.9 191 477-702 10-207 (482)
129 PRK14960 DNA polymerase III su 99.5 4.5E-13 9.9E-18 152.5 17.0 185 477-699 11-224 (702)
130 PRK14949 DNA polymerase III su 99.5 8.3E-13 1.8E-17 154.6 18.6 185 477-699 12-225 (944)
131 PTZ00112 origin recognition co 99.5 5.3E-13 1.2E-17 153.5 16.6 168 517-700 783-987 (1164)
132 KOG2004 Mitochondrial ATP-depe 99.5 2.5E-13 5.3E-18 151.7 13.0 164 208-389 411-596 (906)
133 PF05673 DUF815: Protein of un 99.5 1.1E-12 2.4E-17 132.5 16.4 191 475-696 21-243 (249)
134 PRK12422 chromosomal replicati 99.5 6.1E-13 1.3E-17 149.7 15.9 205 515-758 141-359 (445)
135 PRK14088 dnaA chromosomal repl 99.5 4.5E-13 9.7E-18 151.2 14.8 171 516-702 131-313 (440)
136 PRK07994 DNA polymerase III su 99.5 1.7E-12 3.7E-17 150.2 18.8 185 477-699 12-225 (647)
137 PRK06645 DNA polymerase III su 99.4 9.1E-13 2E-17 149.5 15.7 189 476-702 16-237 (507)
138 PRK14086 dnaA chromosomal repl 99.4 1.1E-12 2.3E-17 149.7 16.2 171 516-703 315-497 (617)
139 COG0466 Lon ATP-dependent Lon 99.4 5.2E-12 1.1E-16 142.3 19.5 164 208-389 323-508 (782)
140 PRK14959 DNA polymerase III su 99.4 1.4E-12 3E-17 149.6 15.2 182 477-696 12-222 (624)
141 PRK12402 replication factor C 99.4 2.9E-12 6.2E-17 141.0 16.7 190 477-702 11-231 (337)
142 PRK14958 DNA polymerase III su 99.4 2E-12 4.4E-17 147.7 15.7 186 477-700 12-226 (509)
143 PRK08691 DNA polymerase III su 99.4 3.9E-12 8.4E-17 146.4 18.0 187 477-701 12-227 (709)
144 PF02359 CDC48_N: Cell divisio 99.4 1E-12 2.2E-17 113.8 9.9 80 30-111 1-85 (87)
145 PRK05563 DNA polymerase III su 99.4 3.9E-12 8.5E-17 147.4 17.7 186 477-700 12-226 (559)
146 PRK07764 DNA polymerase III su 99.4 3E-12 6.5E-17 152.9 17.1 185 477-699 11-226 (824)
147 KOG0989 Replication factor C, 99.4 8E-12 1.7E-16 127.9 17.6 181 476-695 31-228 (346)
148 PRK14964 DNA polymerase III su 99.4 4.2E-12 9.1E-17 142.9 16.4 187 477-701 9-224 (491)
149 PRK13341 recombination factor 99.4 3.3E-12 7.1E-17 150.9 15.8 181 477-699 24-222 (725)
150 TIGR02903 spore_lon_C ATP-depe 99.4 2.7E-11 5.8E-16 142.0 23.4 222 477-747 150-430 (615)
151 PRK14963 DNA polymerase III su 99.4 8.9E-12 1.9E-16 142.2 18.7 184 477-698 10-221 (504)
152 PRK06893 DNA replication initi 99.4 2.9E-12 6.4E-17 132.5 13.4 159 516-697 40-206 (229)
153 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.6E-12 1E-16 131.1 14.8 166 514-704 37-211 (226)
154 PRK14952 DNA polymerase III su 99.4 5.9E-12 1.3E-16 145.1 17.1 186 477-700 9-225 (584)
155 PRK05896 DNA polymerase III su 99.4 1.1E-11 2.4E-16 141.4 18.5 185 477-699 12-225 (605)
156 PRK14956 DNA polymerase III su 99.4 1.5E-11 3.3E-16 136.9 18.7 177 201-411 11-216 (484)
157 PRK14951 DNA polymerase III su 99.4 6.2E-12 1.3E-16 145.3 16.2 185 477-699 12-230 (618)
158 PHA02544 44 clamp loader, smal 99.4 5E-12 1.1E-16 137.8 14.4 156 477-665 17-173 (316)
159 TIGR02397 dnaX_nterm DNA polym 99.4 1.8E-11 4E-16 135.6 19.2 187 476-700 9-224 (355)
160 PRK14087 dnaA chromosomal repl 99.4 4.8E-12 1E-16 143.0 14.2 173 515-704 141-329 (450)
161 PRK07133 DNA polymerase III su 99.4 2.1E-11 4.5E-16 141.9 19.5 191 476-699 13-224 (725)
162 KOG2028 ATPase related to the 99.4 2.3E-11 4.9E-16 126.4 17.4 206 516-771 163-392 (554)
163 COG1474 CDC6 Cdc6-related prot 99.4 1.2E-11 2.6E-16 135.4 16.5 179 513-706 40-249 (366)
164 PLN03025 replication factor C 99.4 1.1E-11 2.4E-16 135.0 16.1 180 477-698 9-201 (319)
165 PRK14969 DNA polymerase III su 99.4 9.1E-12 2E-16 143.4 16.1 186 477-700 12-226 (527)
166 PRK14962 DNA polymerase III su 99.4 2.5E-11 5.5E-16 137.3 19.4 176 201-410 7-211 (472)
167 PRK04195 replication factor C 99.4 2.2E-11 4.7E-16 139.9 19.2 182 200-410 6-195 (482)
168 PRK14970 DNA polymerase III su 99.4 2.9E-11 6.4E-16 134.5 19.7 191 477-699 13-214 (367)
169 PRK14957 DNA polymerase III su 99.4 9E-12 1.9E-16 142.3 15.5 185 477-699 12-225 (546)
170 PRK07003 DNA polymerase III su 99.3 2.6E-11 5.7E-16 139.6 19.1 179 201-413 9-216 (830)
171 PRK10787 DNA-binding ATP-depen 99.3 1.9E-11 4.2E-16 146.2 18.9 227 208-463 322-582 (784)
172 PRK14965 DNA polymerase III su 99.3 3.1E-11 6.6E-16 140.7 19.5 184 477-698 12-224 (576)
173 PRK12323 DNA polymerase III su 99.3 2E-11 4.4E-16 138.9 17.1 185 201-420 9-227 (700)
174 PRK07940 DNA polymerase III su 99.3 4.1E-11 8.9E-16 132.6 18.6 185 206-418 3-214 (394)
175 TIGR02640 gas_vesic_GvpN gas v 99.3 1E-11 2.2E-16 131.1 13.2 132 515-665 21-198 (262)
176 PRK13342 recombination factor 99.3 4.7E-11 1E-15 134.5 19.3 171 201-410 5-189 (413)
177 PRK08084 DNA replication initi 99.3 2.8E-11 6.1E-16 125.7 16.0 158 516-698 46-213 (235)
178 PRK06305 DNA polymerase III su 99.3 5.3E-11 1.2E-15 134.6 19.3 182 477-696 13-224 (451)
179 PRK08903 DnaA regulatory inact 99.3 2.6E-11 5.7E-16 125.5 15.6 176 513-745 40-224 (227)
180 TIGR02928 orc1/cdc6 family rep 99.3 1.9E-10 4E-15 128.1 22.7 200 208-427 15-255 (365)
181 TIGR02902 spore_lonB ATP-depen 99.3 4.5E-11 9.7E-16 138.1 18.2 216 201-462 58-331 (531)
182 PRK14953 DNA polymerase III su 99.3 3.7E-11 8.1E-16 136.7 17.0 185 477-699 12-225 (486)
183 TIGR00390 hslU ATP-dependent p 99.3 1.8E-11 3.8E-16 133.1 12.7 175 210-386 14-343 (441)
184 PRK05642 DNA replication initi 99.3 4.8E-11 1E-15 123.8 15.4 160 515-699 45-213 (234)
185 PRK00411 cdc6 cell division co 99.3 2.1E-10 4.5E-15 129.1 21.3 202 207-427 29-263 (394)
186 KOG2028 ATPase related to the 99.3 1.1E-10 2.3E-15 121.5 17.0 182 201-420 131-339 (554)
187 PRK08727 hypothetical protein; 99.3 5.7E-11 1.2E-15 123.2 15.2 151 516-694 42-201 (233)
188 PLN03025 replication factor C 99.3 1.2E-10 2.5E-15 126.9 18.3 175 200-409 5-192 (319)
189 PRK06647 DNA polymerase III su 99.3 3.5E-11 7.6E-16 138.9 14.6 182 477-696 12-222 (563)
190 PRK05342 clpX ATP-dependent pr 99.3 2.2E-10 4.7E-15 127.4 20.2 218 210-429 73-381 (412)
191 PRK05201 hslU ATP-dependent pr 99.3 2E-11 4.4E-16 132.7 11.6 175 210-386 17-345 (443)
192 COG0593 DnaA ATPase involved i 99.3 5.4E-11 1.2E-15 129.8 14.9 174 515-705 113-297 (408)
193 PRK00149 dnaA chromosomal repl 99.3 1E-10 2.2E-15 133.4 17.6 164 243-420 149-324 (450)
194 PRK14955 DNA polymerase III su 99.3 8.5E-11 1.8E-15 131.6 16.6 187 477-701 12-235 (397)
195 TIGR01650 PD_CobS cobaltochela 99.3 1.7E-11 3.7E-16 130.3 10.3 142 512-667 61-235 (327)
196 PRK14949 DNA polymerase III su 99.3 2.3E-10 5.1E-15 134.4 20.6 191 201-420 9-222 (944)
197 COG1224 TIP49 DNA helicase TIP 99.3 1.9E-10 4.2E-15 119.7 17.6 98 622-747 322-432 (450)
198 PRK14961 DNA polymerase III su 99.3 1.8E-10 3.9E-15 127.5 18.8 185 201-420 9-222 (363)
199 PRK08451 DNA polymerase III su 99.3 1.4E-10 3.1E-15 131.8 18.2 188 477-702 10-226 (535)
200 TIGR03420 DnaA_homol_Hda DnaA 99.3 3.4E-10 7.5E-15 117.0 19.6 185 206-423 13-206 (226)
201 PRK14960 DNA polymerase III su 99.2 2.3E-10 5.1E-15 130.7 19.3 185 201-420 8-221 (702)
202 TIGR00362 DnaA chromosomal rep 99.2 1.4E-10 3E-15 130.7 17.3 167 242-422 136-314 (405)
203 PRK14948 DNA polymerase III su 99.2 2.4E-10 5.2E-15 133.5 19.4 182 477-696 12-224 (620)
204 PRK07994 DNA polymerase III su 99.2 3.4E-10 7.3E-15 131.3 20.3 185 201-420 9-222 (647)
205 PRK14954 DNA polymerase III su 99.2 2.5E-10 5.4E-15 132.7 19.2 190 477-699 12-233 (620)
206 PF05673 DUF815: Protein of un 99.2 3.9E-10 8.5E-15 114.1 18.2 191 201-419 20-242 (249)
207 PRK14950 DNA polymerase III su 99.2 2.4E-10 5.3E-15 133.8 18.8 183 477-697 12-224 (585)
208 PHA02544 44 clamp loader, smal 99.2 1.7E-10 3.8E-15 125.7 16.5 159 200-388 13-172 (316)
209 PF00308 Bac_DnaA: Bacterial d 99.2 3.3E-11 7.2E-16 123.5 10.2 168 516-700 35-214 (219)
210 PRK00440 rfc replication facto 99.2 1.3E-10 2.9E-15 126.7 15.4 170 477-684 13-194 (319)
211 PF00308 Bac_DnaA: Bacterial d 99.2 8.3E-10 1.8E-14 113.2 20.1 164 243-419 35-209 (219)
212 PRK06645 DNA polymerase III su 99.2 4.9E-10 1.1E-14 127.4 20.2 193 201-422 14-233 (507)
213 PRK09111 DNA polymerase III su 99.2 9.4E-11 2E-15 136.0 14.6 190 477-698 20-237 (598)
214 cd00009 AAA The AAA+ (ATPases 99.2 7.7E-11 1.7E-15 112.1 11.7 122 514-651 18-151 (151)
215 PTZ00112 origin recognition co 99.2 3.7E-10 8E-15 130.5 19.0 181 208-408 755-969 (1164)
216 PRK12402 replication factor C 99.2 6.3E-10 1.4E-14 122.4 20.5 180 201-409 8-218 (337)
217 PRK06620 hypothetical protein; 99.2 9.1E-11 2E-15 119.7 12.4 143 516-697 45-192 (214)
218 PRK14088 dnaA chromosomal repl 99.2 2.3E-10 5E-15 129.3 16.5 166 243-420 131-307 (440)
219 PRK06893 DNA replication initi 99.2 3.7E-10 8E-15 116.9 16.6 148 243-410 40-196 (229)
220 COG1219 ClpX ATP-dependent pro 99.2 2.7E-10 5.7E-15 117.0 14.8 132 481-615 61-203 (408)
221 COG2607 Predicted ATPase (AAA+ 99.2 5E-10 1.1E-14 111.0 16.0 168 474-672 53-246 (287)
222 PRK14963 DNA polymerase III su 99.2 6.4E-10 1.4E-14 127.0 19.5 177 201-411 7-211 (504)
223 PRK13407 bchI magnesium chelat 99.2 1.3E-10 2.8E-15 125.6 13.1 160 477-665 4-216 (334)
224 PRK14958 DNA polymerase III su 99.2 4.4E-10 9.4E-15 128.7 17.8 187 201-422 9-224 (509)
225 PRK14964 DNA polymerase III su 99.2 7E-10 1.5E-14 125.2 19.0 187 201-422 6-221 (491)
226 PRK14086 dnaA chromosomal repl 99.2 4.7E-10 1E-14 128.3 17.8 167 243-420 315-490 (617)
227 PRK08691 DNA polymerase III su 99.2 5.7E-10 1.2E-14 128.8 18.2 187 201-422 9-224 (709)
228 TIGR02640 gas_vesic_GvpN gas v 99.2 6.7E-10 1.4E-14 117.3 17.4 133 241-389 20-198 (262)
229 PRK08084 DNA replication initi 99.2 2.1E-09 4.6E-14 111.6 20.7 173 205-410 19-202 (235)
230 cd00009 AAA The AAA+ (ATPases 99.2 6.2E-10 1.3E-14 105.8 15.3 121 241-374 18-150 (151)
231 PRK14959 DNA polymerase III su 99.2 7.1E-10 1.5E-14 127.5 18.0 177 201-411 9-214 (624)
232 PRK07764 DNA polymerase III su 99.2 1.1E-09 2.4E-14 131.2 19.8 176 200-409 7-213 (824)
233 PRK12422 chromosomal replicati 99.2 7.5E-10 1.6E-14 124.9 17.2 155 243-409 142-305 (445)
234 TIGR00382 clpX endopeptidase C 99.1 8.9E-10 1.9E-14 121.8 17.1 217 210-428 79-386 (413)
235 COG5271 MDN1 AAA ATPase contai 99.1 2.1E-09 4.4E-14 127.9 20.5 137 512-666 1540-1704(4600)
236 COG2812 DnaX DNA polymerase II 99.1 3E-10 6.5E-15 127.5 13.4 194 477-702 12-228 (515)
237 PRK14971 DNA polymerase III su 99.1 1.2E-09 2.7E-14 127.7 19.0 185 477-699 13-227 (614)
238 PRK08727 hypothetical protein; 99.1 1.4E-09 3E-14 112.8 17.2 146 243-410 42-197 (233)
239 PRK14952 DNA polymerase III su 99.1 2E-09 4.3E-14 124.3 20.1 175 201-409 6-211 (584)
240 PRK08903 DnaA regulatory inact 99.1 2.9E-09 6.3E-14 110.2 19.4 179 205-421 15-202 (227)
241 PRK14957 DNA polymerase III su 99.1 2.3E-09 5.1E-14 122.6 20.2 176 201-410 9-213 (546)
242 PRK13341 recombination factor 99.1 1.4E-09 3.1E-14 128.8 19.0 171 201-410 21-210 (725)
243 PRK05896 DNA polymerase III su 99.1 1.7E-09 3.6E-14 123.9 18.8 176 201-410 9-213 (605)
244 KOG0989 Replication factor C, 99.1 9.2E-10 2E-14 113.0 14.8 179 200-410 28-223 (346)
245 COG0542 clpA ATP-binding subun 99.1 3.6E-10 7.7E-15 131.5 13.2 167 477-668 166-349 (786)
246 KOG1969 DNA replication checkp 99.1 9.2E-10 2E-14 124.1 15.9 174 512-706 323-519 (877)
247 CHL00081 chlI Mg-protoporyphyr 99.1 7.2E-10 1.6E-14 119.9 14.3 162 475-665 11-232 (350)
248 PHA02244 ATPase-like protein 99.1 8.8E-10 1.9E-14 118.4 14.7 127 514-661 118-269 (383)
249 COG0714 MoxR-like ATPases [Gen 99.1 4.8E-10 1E-14 122.6 13.1 134 513-666 41-204 (329)
250 PRK14951 DNA polymerase III su 99.1 2.1E-09 4.6E-14 124.5 18.9 190 201-419 9-226 (618)
251 PRK14969 DNA polymerase III su 99.1 1.4E-09 3E-14 125.5 16.8 187 201-422 9-224 (527)
252 PRK05563 DNA polymerase III su 99.1 2.6E-09 5.6E-14 124.0 19.1 185 201-420 9-222 (559)
253 TIGR02030 BchI-ChlI magnesium 99.1 7.4E-10 1.6E-14 120.0 13.4 155 479-665 2-219 (337)
254 COG1220 HslU ATP-dependent pro 99.1 3.7E-09 8E-14 109.5 17.7 82 576-661 252-345 (444)
255 PRK07133 DNA polymerase III su 99.1 3.6E-09 7.7E-14 123.5 19.9 182 201-410 11-212 (725)
256 TIGR02397 dnaX_nterm DNA polym 99.1 2.7E-09 5.9E-14 118.3 18.3 175 201-409 7-210 (355)
257 PRK14970 DNA polymerase III su 99.1 3.1E-09 6.6E-14 118.3 18.1 176 200-409 9-201 (367)
258 PF07728 AAA_5: AAA domain (dy 99.1 4.7E-11 1E-15 113.6 3.1 109 517-643 1-139 (139)
259 PRK09112 DNA polymerase III su 99.1 1.7E-09 3.7E-14 118.2 15.6 190 477-699 19-245 (351)
260 PRK05642 DNA replication initi 99.1 4.3E-09 9.4E-14 109.2 17.5 148 242-409 45-200 (234)
261 TIGR00678 holB DNA polymerase 99.1 1.2E-09 2.7E-14 109.5 13.1 143 514-685 13-183 (188)
262 PRK09087 hypothetical protein; 99.1 1.4E-09 3.1E-14 111.8 13.5 136 516-684 45-186 (226)
263 PRK14953 DNA polymerase III su 99.1 5.5E-09 1.2E-13 119.1 19.4 181 201-409 9-212 (486)
264 smart00382 AAA ATPases associa 99.1 6.6E-10 1.4E-14 104.7 10.1 127 515-652 2-147 (148)
265 PRK07471 DNA polymerase III su 99.1 6.6E-09 1.4E-13 114.2 19.1 175 477-685 15-230 (365)
266 PRK06305 DNA polymerase III su 99.1 5.6E-09 1.2E-13 118.3 19.0 175 201-409 10-214 (451)
267 PRK14087 dnaA chromosomal repl 99.0 3.7E-09 8.1E-14 119.7 17.0 169 243-423 142-324 (450)
268 PRK00440 rfc replication facto 99.0 6.3E-09 1.4E-13 113.5 18.4 176 200-410 9-196 (319)
269 PRK05564 DNA polymerase III su 99.0 2.2E-09 4.7E-14 116.7 14.5 167 479-685 2-182 (313)
270 PRK06647 DNA polymerase III su 99.0 7.3E-09 1.6E-13 119.9 19.5 184 201-419 9-221 (563)
271 PRK11331 5-methylcytosine-spec 99.0 1.1E-09 2.4E-14 120.7 11.5 125 514-654 193-361 (459)
272 PRK14965 DNA polymerase III su 99.0 5.5E-09 1.2E-13 121.9 17.9 176 201-410 9-213 (576)
273 COG1474 CDC6 Cdc6-related prot 99.0 1.5E-08 3.3E-13 111.2 20.2 200 208-429 17-248 (366)
274 PF07724 AAA_2: AAA domain (Cd 99.0 4.3E-10 9.3E-15 110.4 7.3 112 514-630 2-130 (171)
275 KOG0745 Putative ATP-dependent 99.0 6.5E-09 1.4E-13 110.9 16.5 100 516-615 227-332 (564)
276 TIGR02903 spore_lon_C ATP-depe 99.0 1.7E-08 3.7E-13 118.6 21.8 179 202-407 148-385 (615)
277 TIGR01650 PD_CobS cobaltochela 99.0 5.5E-10 1.2E-14 118.9 8.4 138 240-391 62-235 (327)
278 TIGR02442 Cob-chelat-sub cobal 99.0 2.2E-09 4.7E-14 126.9 14.2 155 479-665 2-214 (633)
279 PHA02244 ATPase-like protein 99.0 1.2E-08 2.6E-13 109.7 18.1 123 240-378 117-263 (383)
280 TIGR00764 lon_rel lon-related 99.0 5E-09 1.1E-13 122.6 15.7 55 473-542 10-64 (608)
281 COG0488 Uup ATPase components 99.0 6.5E-09 1.4E-13 118.8 16.1 30 237-266 24-53 (530)
282 PRK09111 DNA polymerase III su 99.0 1.9E-08 4.1E-13 117.0 20.1 190 201-419 17-234 (598)
283 PRK14948 DNA polymerase III su 99.0 2E-08 4.3E-13 117.6 20.1 182 201-410 9-215 (620)
284 PRK08451 DNA polymerase III su 99.0 1.9E-08 4.2E-13 114.6 19.3 187 201-422 7-222 (535)
285 PRK06620 hypothetical protein; 99.0 1.1E-08 2.3E-13 104.5 15.2 134 243-410 45-182 (214)
286 smart00382 AAA ATPases associa 99.0 3.5E-09 7.5E-14 99.7 10.8 128 242-376 2-147 (148)
287 PRK14954 DNA polymerase III su 99.0 2.8E-08 6E-13 115.8 19.9 183 201-411 9-222 (620)
288 PRK14955 DNA polymerase III su 99.0 1.1E-08 2.3E-13 114.8 16.0 176 201-410 9-221 (397)
289 PRK07399 DNA polymerase III su 98.9 3.2E-09 6.9E-14 114.5 10.7 183 479-696 2-223 (314)
290 TIGR03015 pepcterm_ATPase puta 98.9 2.7E-08 5.8E-13 105.8 17.7 188 517-748 45-267 (269)
291 KOG1969 DNA replication checkp 98.9 1.6E-08 3.6E-13 114.2 16.4 200 201-415 264-508 (877)
292 COG0593 DnaA ATPase involved i 98.9 3.3E-08 7.1E-13 108.2 17.9 157 241-409 112-278 (408)
293 COG5271 MDN1 AAA ATPase contai 98.9 2E-08 4.4E-13 119.7 16.8 133 241-388 887-1046(4600)
294 PF07728 AAA_5: AAA domain (dy 98.9 6.3E-10 1.4E-14 105.8 3.4 109 244-367 1-139 (139)
295 PRK14950 DNA polymerase III su 98.9 4.1E-08 8.9E-13 115.2 19.1 176 200-409 8-213 (585)
296 PF06068 TIP49: TIP49 C-termin 98.9 8.9E-09 1.9E-13 109.5 11.6 66 480-553 23-90 (398)
297 PRK13407 bchI magnesium chelat 98.9 8.3E-09 1.8E-13 111.6 11.6 159 203-388 3-215 (334)
298 KOG1514 Origin recognition com 98.9 3.2E-08 6.9E-13 111.8 16.5 218 517-765 424-673 (767)
299 PRK05707 DNA polymerase III su 98.9 1.3E-08 2.9E-13 110.3 13.1 148 513-685 20-195 (328)
300 PRK09087 hypothetical protein; 98.9 3.8E-08 8.1E-13 101.4 15.5 140 242-409 44-187 (226)
301 PRK04132 replication factor C 98.9 1.9E-08 4.2E-13 119.7 15.0 144 517-685 566-723 (846)
302 PF01078 Mg_chelatase: Magnesi 98.9 1.2E-09 2.6E-14 108.6 3.4 139 480-655 2-205 (206)
303 PF07726 AAA_3: ATPase family 98.9 1.2E-09 2.7E-14 99.5 2.9 104 517-643 1-129 (131)
304 COG0470 HolB ATPase involved i 98.8 2.9E-08 6.3E-13 108.5 13.9 125 517-662 26-178 (325)
305 COG2812 DnaX DNA polymerase II 98.8 2.1E-08 4.7E-13 112.8 12.9 194 201-423 9-225 (515)
306 PRK09112 DNA polymerase III su 98.8 1.6E-07 3.5E-12 102.7 19.2 181 203-412 18-235 (351)
307 COG0714 MoxR-like ATPases [Gen 98.8 2.9E-08 6.2E-13 108.7 13.4 128 241-385 42-198 (329)
308 PRK11331 5-methylcytosine-spec 98.8 4E-08 8.6E-13 108.6 14.3 141 207-375 174-357 (459)
309 TIGR02031 BchD-ChlD magnesium 98.8 1.3E-07 2.8E-12 110.7 19.1 133 515-666 16-175 (589)
310 PRK08058 DNA polymerase III su 98.8 1.4E-08 3.1E-13 110.8 10.1 149 479-663 3-180 (329)
311 TIGR00368 Mg chelatase-related 98.8 3.5E-08 7.5E-13 112.5 13.5 144 478-655 189-394 (499)
312 KOG0991 Replication factor C, 98.8 3.9E-08 8.5E-13 96.9 11.9 136 200-363 19-162 (333)
313 PRK13531 regulatory ATPase Rav 98.8 1.3E-08 2.7E-13 113.4 9.1 136 513-664 37-193 (498)
314 COG1123 ATPase components of v 98.8 6.5E-08 1.4E-12 108.8 14.7 32 237-268 30-61 (539)
315 COG2607 Predicted ATPase (AAA+ 98.8 4.6E-07 1E-11 90.3 18.8 168 201-396 53-246 (287)
316 PF07724 AAA_2: AAA domain (Cd 98.8 1.9E-08 4.2E-13 98.8 9.0 112 241-354 2-130 (171)
317 PRK14971 DNA polymerase III su 98.8 2.2E-07 4.7E-12 108.9 19.4 175 201-409 10-214 (614)
318 smart00763 AAA_PrkA PrkA AAA d 98.8 6.7E-08 1.4E-12 104.2 13.8 164 480-668 49-330 (361)
319 CHL00081 chlI Mg-protoporyphyr 98.8 2.9E-08 6.3E-13 107.5 11.0 160 203-388 12-231 (350)
320 TIGR02030 BchI-ChlI magnesium 98.8 4.1E-08 8.8E-13 106.5 11.9 157 206-388 2-218 (337)
321 smart00350 MCM minichromosome 98.8 4.1E-08 8.9E-13 113.4 12.5 163 483-666 205-401 (509)
322 TIGR00678 holB DNA polymerase 98.8 1.3E-07 2.9E-12 94.8 14.5 142 242-409 14-183 (188)
323 TIGR02655 circ_KaiC circadian 98.7 1.4E-06 3.1E-11 100.2 23.3 78 511-588 259-367 (484)
324 KOG2227 Pre-initiation complex 98.7 4E-07 8.6E-12 98.8 17.1 240 483-754 152-422 (529)
325 PRK11608 pspF phage shock prot 98.7 5.2E-08 1.1E-12 106.2 10.7 191 480-702 5-240 (326)
326 PRK06964 DNA polymerase III su 98.7 4.4E-08 9.6E-13 106.2 9.9 133 513-664 19-203 (342)
327 TIGR02974 phageshock_pspF psp 98.7 8.2E-08 1.8E-12 104.6 11.8 167 515-702 22-233 (329)
328 TIGR00602 rad24 checkpoint pro 98.7 1.4E-07 3E-12 109.8 14.3 200 477-704 80-330 (637)
329 COG1220 HslU ATP-dependent pro 98.7 1.1E-07 2.4E-12 98.8 11.6 82 303-386 252-346 (444)
330 KOG1942 DNA helicase, TBP-inte 98.7 2.3E-07 5E-12 94.3 13.6 106 575-700 297-416 (456)
331 PRK05564 DNA polymerase III su 98.7 5.5E-07 1.2E-11 97.9 17.7 170 206-410 2-183 (313)
332 PF05621 TniB: Bacterial TniB 98.7 3.6E-07 7.8E-12 95.8 15.3 177 515-706 61-273 (302)
333 COG1219 ClpX ATP-dependent pro 98.7 5.3E-08 1.1E-12 100.4 8.8 97 242-338 97-202 (408)
334 PRK07471 DNA polymerase III su 98.7 8.1E-07 1.7E-11 97.8 18.6 179 203-412 14-233 (365)
335 TIGR00602 rad24 checkpoint pro 98.7 3.5E-07 7.7E-12 106.5 16.2 190 200-409 76-315 (637)
336 PRK08116 hypothetical protein; 98.7 4.7E-08 1E-12 103.3 8.1 123 515-654 114-251 (268)
337 COG1221 PspF Transcriptional r 98.7 6.6E-08 1.4E-12 105.6 9.2 199 478-706 75-313 (403)
338 PRK13531 regulatory ATPase Rav 98.7 1.5E-07 3.3E-12 104.9 12.1 135 240-388 37-193 (498)
339 KOG0991 Replication factor C, 98.7 9.9E-08 2.1E-12 94.2 9.3 181 477-696 23-213 (333)
340 PRK15424 propionate catabolism 98.6 9.5E-08 2.1E-12 109.7 10.2 191 479-702 217-465 (538)
341 COG3829 RocR Transcriptional r 98.6 7.3E-08 1.6E-12 106.8 8.7 193 477-702 241-479 (560)
342 TIGR01817 nifA Nif-specific re 98.6 1.6E-07 3.5E-12 109.6 12.2 197 478-704 193-430 (534)
343 TIGR02329 propionate_PrpR prop 98.6 9.3E-08 2E-12 109.9 9.9 193 478-702 209-450 (526)
344 PF13177 DNA_pol3_delta2: DNA 98.6 1.1E-07 2.3E-12 92.8 8.4 134 485-652 1-161 (162)
345 COG0470 HolB ATPase involved i 98.6 3.8E-07 8.2E-12 99.7 13.8 147 209-384 2-176 (325)
346 PF00158 Sigma54_activat: Sigm 98.6 3.1E-08 6.8E-13 97.0 4.6 114 515-648 22-159 (168)
347 PF01078 Mg_chelatase: Magnesi 98.6 6.9E-08 1.5E-12 96.1 6.9 46 207-267 2-47 (206)
348 COG1224 TIP49 DNA helicase TIP 98.6 3.2E-06 7E-11 88.8 19.4 60 208-278 39-103 (450)
349 PRK09862 putative ATP-dependen 98.6 4E-07 8.6E-12 103.4 13.9 143 479-655 189-391 (506)
350 COG3604 FhlA Transcriptional r 98.6 1.5E-07 3.3E-12 103.0 9.9 193 477-702 219-456 (550)
351 PF07726 AAA_3: ATPase family 98.6 2E-08 4.2E-13 91.7 2.6 104 244-367 1-129 (131)
352 PRK06871 DNA polymerase III su 98.6 4.1E-07 8.9E-12 98.1 13.0 129 513-664 22-178 (325)
353 PRK11388 DNA-binding transcrip 98.6 1E-07 2.3E-12 113.8 9.2 247 478-755 322-611 (638)
354 PRK07993 DNA polymerase III su 98.6 3.7E-07 7.9E-12 99.4 12.3 147 513-685 22-196 (334)
355 TIGR02442 Cob-chelat-sub cobal 98.6 2.8E-07 6E-12 109.2 12.0 156 206-387 2-212 (633)
356 PRK15429 formate hydrogenlyase 98.6 5.5E-07 1.2E-11 108.3 14.5 240 478-752 373-658 (686)
357 KOG0927 Predicted transporter 98.6 1.1E-06 2.3E-11 97.1 15.1 29 237-265 96-124 (614)
358 PRK08769 DNA polymerase III su 98.6 5.7E-07 1.2E-11 96.8 12.9 154 513-690 24-205 (319)
359 PRK05707 DNA polymerase III su 98.6 1.4E-06 3E-11 94.7 15.7 148 242-411 22-197 (328)
360 TIGR03015 pepcterm_ATPase puta 98.5 3.7E-06 7.9E-11 89.4 18.7 173 243-429 44-249 (269)
361 PRK04132 replication factor C 98.5 1.1E-06 2.5E-11 104.9 16.2 153 241-415 563-729 (846)
362 PF05621 TniB: Bacterial TniB 98.5 2.8E-06 6.1E-11 89.2 16.9 181 241-431 60-274 (302)
363 PRK05022 anaerobic nitric oxid 98.5 8.3E-07 1.8E-11 102.9 14.3 193 480-704 186-422 (509)
364 COG2204 AtoC Response regulato 98.5 2.8E-07 6E-12 102.5 9.8 245 479-755 139-437 (464)
365 KOG0745 Putative ATP-dependent 98.5 2.4E-07 5.1E-12 99.2 8.8 97 242-338 226-331 (564)
366 PRK07399 DNA polymerase III su 98.5 1.7E-06 3.7E-11 93.5 15.5 179 206-415 2-219 (314)
367 PRK09302 circadian clock prote 98.5 4.7E-06 1E-10 96.9 20.1 78 511-588 269-377 (509)
368 PRK06090 DNA polymerase III su 98.5 9.7E-07 2.1E-11 94.9 11.9 129 513-663 23-178 (319)
369 PRK10820 DNA-binding transcrip 98.5 6.6E-07 1.4E-11 103.7 11.3 197 478-704 201-439 (520)
370 PRK08116 hypothetical protein; 98.5 8E-07 1.7E-11 94.0 11.0 101 242-354 114-221 (268)
371 PRK08058 DNA polymerase III su 98.5 2E-06 4.4E-11 93.9 14.0 148 207-387 4-180 (329)
372 COG1239 ChlI Mg-chelatase subu 98.4 5.7E-06 1.2E-10 89.7 16.8 161 477-667 13-234 (423)
373 KOG2680 DNA helicase TIP49, TB 98.4 4.6E-06 9.9E-11 85.4 14.7 98 622-747 319-429 (454)
374 PRK08181 transposase; Validate 98.4 1.5E-06 3.3E-11 91.5 11.7 101 241-354 105-209 (269)
375 PF00158 Sigma54_activat: Sigm 98.4 2.5E-06 5.4E-11 83.6 12.5 130 210-367 1-154 (168)
376 PRK13765 ATP-dependent proteas 98.4 1.7E-06 3.7E-11 101.1 13.2 53 473-540 23-75 (637)
377 PRK08181 transposase; Validate 98.4 5E-07 1.1E-11 95.1 7.9 101 514-630 105-209 (269)
378 PRK10636 putative ABC transpor 98.4 6.2E-07 1.3E-11 106.7 9.7 30 237-266 22-51 (638)
379 TIGR00764 lon_rel lon-related 98.4 1.1E-05 2.4E-10 94.8 19.6 53 202-269 12-64 (608)
380 PTZ00111 DNA replication licen 98.4 1.7E-06 3.7E-11 102.9 12.6 162 483-664 452-656 (915)
381 PRK08699 DNA polymerase III su 98.4 8.6E-07 1.9E-11 96.1 9.3 131 513-663 19-183 (325)
382 PRK06526 transposase; Provisio 98.4 1.2E-06 2.6E-11 91.7 10.1 73 240-314 96-172 (254)
383 PRK09183 transposase/IS protei 98.4 1.3E-06 2.9E-11 91.9 10.3 104 239-354 99-206 (259)
384 PF03215 Rad17: Rad17 cell cyc 98.4 4.5E-06 9.8E-11 95.6 15.2 174 514-703 44-269 (519)
385 PF13173 AAA_14: AAA domain 98.4 2.2E-06 4.7E-11 80.2 10.6 70 242-313 2-73 (128)
386 PRK09183 transposase/IS protei 98.4 6.1E-07 1.3E-11 94.4 7.3 72 514-586 101-176 (259)
387 PF01637 Arch_ATPase: Archaeal 98.4 5.5E-06 1.2E-10 85.5 14.3 181 211-411 2-228 (234)
388 TIGR00368 Mg chelatase-related 98.4 3.3E-06 7.2E-11 96.5 13.5 48 205-267 189-236 (499)
389 COG1239 ChlI Mg-chelatase subu 98.4 5.8E-06 1.3E-10 89.6 14.5 161 204-390 13-233 (423)
390 PF13173 AAA_14: AAA domain 98.4 1.8E-06 4E-11 80.8 9.4 119 516-656 3-126 (128)
391 PRK07952 DNA replication prote 98.3 1.4E-06 3E-11 90.4 8.6 100 516-630 100-205 (244)
392 PRK11147 ABC transporter ATPas 98.3 1.1E-06 2.3E-11 104.9 8.7 30 237-266 24-53 (635)
393 PRK06526 transposase; Provisio 98.3 5.8E-07 1.3E-11 94.0 5.5 101 514-630 97-201 (254)
394 COG0606 Predicted ATPase with 98.3 1.4E-07 3E-12 103.3 0.9 48 477-539 175-222 (490)
395 PF13401 AAA_22: AAA domain; P 98.3 3.2E-06 6.8E-11 79.2 10.0 98 242-351 4-125 (131)
396 PRK08939 primosomal protein Dn 98.3 8.5E-07 1.8E-11 95.4 6.8 101 514-630 155-261 (306)
397 PF01637 Arch_ATPase: Archaeal 98.3 1.3E-06 2.7E-11 90.3 7.8 165 514-691 19-231 (234)
398 COG4172 ABC-type uncharacteriz 98.3 7.8E-06 1.7E-10 87.3 13.6 69 512-589 310-379 (534)
399 PF13401 AAA_22: AAA domain; P 98.3 3.8E-06 8.1E-11 78.7 10.3 99 515-628 4-126 (131)
400 COG1484 DnaC DNA replication p 98.3 5.7E-06 1.2E-10 86.7 12.2 72 241-313 104-179 (254)
401 PRK12377 putative replication 98.3 1.9E-06 4.1E-11 89.6 8.4 101 515-630 101-206 (248)
402 smart00350 MCM minichromosome 98.3 2.4E-06 5.1E-11 98.9 10.0 131 242-389 236-400 (509)
403 PRK09700 D-allose transporter 98.3 3E-06 6.5E-11 98.7 10.7 30 237-266 26-55 (510)
404 PRK15424 propionate catabolism 98.3 1.9E-06 4.1E-11 99.1 8.6 151 205-383 216-406 (538)
405 PRK05022 anaerobic nitric oxid 98.3 2.2E-05 4.7E-10 91.2 17.2 150 206-383 185-365 (509)
406 TIGR02974 phageshock_pspF psp 98.3 3.3E-06 7.3E-11 92.0 9.9 146 211-384 2-178 (329)
407 PRK10938 putative molybdenum t 98.3 1.4E-06 3.1E-11 100.9 7.4 30 237-266 24-53 (490)
408 COG1221 PspF Transcriptional r 98.2 2.5E-06 5.4E-11 93.4 8.4 151 203-382 73-253 (403)
409 PRK11608 pspF phage shock prot 98.2 3.3E-06 7.2E-11 92.1 9.4 149 207-383 5-184 (326)
410 PRK06964 DNA polymerase III su 98.2 8.8E-06 1.9E-10 88.4 12.4 133 240-388 19-203 (342)
411 PF13177 DNA_pol3_delta2: DNA 98.2 1.3E-05 2.9E-10 78.1 12.5 132 212-374 1-159 (162)
412 PRK15439 autoinducer 2 ABC tra 98.2 4.1E-06 8.9E-11 97.4 10.5 30 237-266 32-61 (510)
413 PRK06921 hypothetical protein; 98.2 6.6E-06 1.4E-10 86.9 10.9 69 241-312 116-188 (266)
414 COG3829 RocR Transcriptional r 98.2 3E-06 6.5E-11 94.3 8.5 153 204-384 241-425 (560)
415 PF01695 IstB_IS21: IstB-like 98.2 1.1E-06 2.3E-11 87.2 4.6 70 514-585 46-119 (178)
416 TIGR02031 BchD-ChlD magnesium 98.2 6.5E-06 1.4E-10 96.6 11.8 132 243-389 17-174 (589)
417 TIGR03269 met_CoM_red_A2 methy 98.2 5.6E-06 1.2E-10 96.6 11.3 30 237-266 21-50 (520)
418 PRK06835 DNA replication prote 98.2 1.9E-06 4E-11 93.5 6.7 70 515-586 183-258 (329)
419 PRK06871 DNA polymerase III su 98.2 5.9E-05 1.3E-09 81.5 18.2 127 242-388 24-178 (325)
420 COG1116 TauB ABC-type nitrate/ 98.2 6.6E-06 1.4E-10 83.6 10.1 30 237-266 24-53 (248)
421 COG1484 DnaC DNA replication p 98.2 2.7E-06 5.8E-11 89.2 7.5 68 514-586 104-179 (254)
422 PRK10982 galactose/methyl gala 98.2 5.1E-06 1.1E-10 96.3 10.5 30 237-266 19-48 (491)
423 PRK12377 putative replication 98.2 4.6E-06 1E-10 86.7 9.1 70 242-313 101-175 (248)
424 PLN03073 ABC transporter F fam 98.2 3.5E-06 7.6E-11 100.9 9.1 29 237-265 198-226 (718)
425 PRK10820 DNA-binding transcrip 98.2 1.6E-05 3.4E-10 92.4 14.2 153 203-383 199-382 (520)
426 PF01695 IstB_IS21: IstB-like 98.2 2.2E-06 4.8E-11 84.9 6.1 102 240-354 45-150 (178)
427 PRK15429 formate hydrogenlyase 98.2 9.8E-06 2.1E-10 97.6 12.8 150 205-383 373-554 (686)
428 PRK06835 DNA replication prote 98.2 9.7E-06 2.1E-10 87.9 11.5 100 242-353 183-288 (329)
429 PRK11288 araG L-arabinose tran 98.2 3.1E-06 6.7E-11 98.3 8.3 30 237-266 25-54 (501)
430 PRK15064 ABC transporter ATP-b 98.2 5.4E-06 1.2E-10 97.0 10.1 30 237-266 22-51 (530)
431 PRK07952 DNA replication prote 98.2 4.7E-06 1E-10 86.4 8.5 69 243-313 100-174 (244)
432 TIGR02329 propionate_PrpR prop 98.2 3.9E-06 8.3E-11 96.7 8.3 153 205-383 209-391 (526)
433 TIGR02915 PEP_resp_reg putativ 98.2 3.1E-06 6.6E-11 96.9 7.5 171 515-705 162-375 (445)
434 KOG0062 ATPase component of AB 98.2 6E-05 1.3E-09 83.1 16.6 28 237-264 101-128 (582)
435 PF14532 Sigma54_activ_2: Sigm 98.2 1.1E-06 2.4E-11 83.4 3.0 60 515-588 21-83 (138)
436 PRK06921 hypothetical protein; 98.1 2.6E-06 5.7E-11 89.9 6.0 69 514-585 116-188 (266)
437 PRK13549 xylose transporter AT 98.1 6E-07 1.3E-11 104.4 1.2 42 237-278 26-71 (506)
438 KOG0990 Replication factor C, 98.1 2.3E-05 4.9E-10 81.6 12.3 157 479-670 39-208 (360)
439 TIGR01817 nifA Nif-specific re 98.1 7.6E-06 1.6E-10 95.7 10.1 125 205-354 193-341 (534)
440 KOG1970 Checkpoint RAD17-RFC c 98.1 5.3E-05 1.2E-09 84.1 15.8 173 516-704 111-322 (634)
441 PRK07993 DNA polymerase III su 98.1 7.8E-05 1.7E-09 81.3 17.0 149 241-412 23-199 (334)
442 PF03215 Rad17: Rad17 cell cyc 98.1 5.7E-05 1.2E-09 86.7 16.4 66 200-273 11-76 (519)
443 PRK11388 DNA-binding transcrip 98.1 1.4E-05 3.1E-10 95.5 12.1 152 204-383 321-500 (638)
444 PRK10923 glnG nitrogen regulat 98.1 1.5E-05 3.4E-10 91.8 11.8 166 515-704 161-373 (469)
445 TIGR02237 recomb_radB DNA repa 98.1 1.7E-05 3.7E-10 80.9 10.8 115 238-352 8-148 (209)
446 PF05729 NACHT: NACHT domain 98.1 2.4E-05 5.2E-10 76.1 11.4 141 244-391 2-165 (166)
447 TIGR02633 xylG D-xylose ABC tr 98.1 1.2E-05 2.6E-10 93.4 10.8 31 237-267 22-52 (500)
448 PRK08939 primosomal protein Dn 98.1 1.3E-05 2.9E-10 86.2 10.2 71 241-313 155-229 (306)
449 COG0606 Predicted ATPase with 98.1 1.8E-06 3.9E-11 94.8 3.5 49 204-267 175-223 (490)
450 COG4619 ABC-type uncharacteriz 98.1 2.9E-05 6.3E-10 73.5 11.0 31 236-266 23-53 (223)
451 cd01120 RecA-like_NTPases RecA 98.1 2.3E-05 5E-10 75.9 11.1 110 518-631 2-138 (165)
452 PRK08769 DNA polymerase III su 98.1 0.00012 2.6E-09 79.1 17.3 150 242-412 26-203 (319)
453 COG1120 FepC ABC-type cobalami 98.1 9.1E-06 2E-10 84.0 8.3 31 237-267 23-53 (258)
454 PRK09862 putative ATP-dependen 98.1 1.1E-05 2.4E-10 91.8 9.7 125 239-379 207-391 (506)
455 PF12775 AAA_7: P-loop contain 98.1 5.1E-06 1.1E-10 88.0 6.2 139 240-390 31-194 (272)
456 PRK08699 DNA polymerase III su 98.1 2.6E-05 5.5E-10 84.7 11.5 132 240-387 19-183 (325)
457 KOG2035 Replication factor C, 98.0 4.4E-05 9.4E-10 77.9 12.0 155 516-693 35-224 (351)
458 PRK15115 response regulator Gl 98.0 1.7E-05 3.8E-10 90.7 10.5 215 516-755 158-418 (444)
459 KOG2035 Replication factor C, 98.0 0.00026 5.6E-09 72.4 17.4 174 205-412 10-223 (351)
460 PRK11361 acetoacetate metaboli 98.0 1.8E-05 3.9E-10 90.9 10.6 168 515-702 166-376 (457)
461 COG2204 AtoC Response regulato 98.0 9.4E-06 2E-10 90.5 7.7 151 206-384 139-320 (464)
462 PRK10762 D-ribose transporter 98.0 1E-06 2.3E-11 102.2 0.2 41 237-277 25-67 (501)
463 PRK13409 putative ATPase RIL; 98.0 3.1E-05 6.7E-10 91.1 12.4 29 239-267 96-124 (590)
464 TIGR01818 ntrC nitrogen regula 98.0 1.2E-05 2.7E-10 92.5 8.9 170 515-705 157-370 (463)
465 KOG0066 eIF2-interacting prote 98.0 0.00014 3.1E-09 78.2 15.8 31 510-540 608-638 (807)
466 PRK05917 DNA polymerase III su 98.0 2.6E-05 5.7E-10 82.4 10.4 121 513-652 17-154 (290)
467 smart00763 AAA_PrkA PrkA AAA d 98.0 1E-05 2.3E-10 87.4 7.2 81 209-297 52-144 (361)
468 cd01120 RecA-like_NTPases RecA 98.0 2.7E-05 5.9E-10 75.4 9.5 72 245-316 2-100 (165)
469 PRK06090 DNA polymerase III su 98.0 0.00015 3.2E-09 78.3 15.7 127 242-387 25-178 (319)
470 PF14532 Sigma54_activ_2: Sigm 98.0 8.9E-06 1.9E-10 77.2 5.7 78 212-314 2-82 (138)
471 COG1118 CysA ABC-type sulfate/ 98.0 6.6E-06 1.4E-10 85.3 4.7 30 237-266 23-52 (345)
472 cd03216 ABC_Carb_Monos_I This 98.0 2.5E-05 5.4E-10 76.4 8.6 76 237-312 21-111 (163)
473 COG1125 OpuBA ABC-type proline 98.0 1.7E-05 3.6E-10 80.2 7.4 31 236-266 21-51 (309)
474 PRK06851 hypothetical protein; 98.0 0.00025 5.3E-09 77.6 16.7 34 515-548 214-250 (367)
475 COG3842 PotA ABC-type spermidi 98.0 1.7E-05 3.7E-10 85.8 7.7 30 237-266 26-55 (352)
476 PRK10365 transcriptional regul 98.0 1.9E-05 4E-10 90.4 8.4 165 515-702 162-372 (441)
477 COG1126 GlnQ ABC-type polar am 97.9 1.5E-05 3.3E-10 78.8 6.3 29 237-265 23-51 (240)
478 KOG2227 Pre-initiation complex 97.9 0.00024 5.1E-09 77.8 15.9 186 208-412 150-363 (529)
479 PRK13406 bchD magnesium chelat 97.9 5.3E-05 1.2E-09 88.2 11.9 122 516-656 26-173 (584)
480 PRK07276 DNA polymerase III su 97.9 0.00047 1E-08 73.2 17.4 128 513-662 22-172 (290)
481 COG3839 MalK ABC-type sugar tr 97.9 3.1E-05 6.6E-10 83.3 8.5 31 237-267 24-54 (338)
482 cd03222 ABC_RNaseL_inhibitor T 97.9 3.8E-05 8.3E-10 75.9 8.6 75 238-312 21-100 (177)
483 TIGR02012 tigrfam_recA protein 97.9 7.1E-05 1.5E-09 80.5 11.1 115 238-352 51-190 (321)
484 PLN03210 Resistant to P. syrin 97.9 0.00023 5.1E-09 90.7 17.5 174 206-410 182-388 (1153)
485 KOG1514 Origin recognition com 97.9 0.00044 9.5E-09 79.1 17.4 154 243-407 423-607 (767)
486 cd03214 ABC_Iron-Siderophores_ 97.9 2.8E-05 6E-10 77.4 7.2 31 237-267 20-50 (180)
487 PF00910 RNA_helicase: RNA hel 97.9 5.1E-05 1.1E-09 68.6 8.2 94 518-629 1-107 (107)
488 PF12775 AAA_7: P-loop contain 97.9 7.4E-06 1.6E-10 86.8 3.1 136 514-667 32-195 (272)
489 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00018 3.9E-09 74.1 13.1 127 242-385 32-176 (231)
490 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 3.5E-05 7.7E-10 79.3 7.8 56 291-357 147-202 (254)
491 COG1618 Predicted nucleotide k 97.9 0.00015 3.2E-09 68.5 11.0 27 241-267 4-30 (179)
492 PF03969 AFG1_ATPase: AFG1-lik 97.9 3.4E-05 7.4E-10 84.8 8.0 141 512-680 59-208 (362)
493 PF05729 NACHT: NACHT domain 97.9 7.3E-05 1.6E-09 72.7 9.6 141 517-667 2-165 (166)
494 PF03152 UFD1: Ubiquitin fusio 97.8 0.0003 6.5E-09 68.6 13.4 143 40-187 24-171 (176)
495 PF00931 NB-ARC: NB-ARC domain 97.8 0.00039 8.5E-09 74.5 15.9 167 214-410 2-195 (287)
496 PF09336 Vps4_C: Vps4 C termin 97.8 1.4E-05 3.1E-10 63.8 3.5 36 732-767 27-62 (62)
497 cd00983 recA RecA is a bacter 97.8 0.00013 2.8E-09 78.5 11.8 115 238-352 51-190 (325)
498 KOG1051 Chaperone HSP104 and r 97.8 8.9E-05 1.9E-09 88.4 11.5 129 208-354 562-711 (898)
499 KOG0990 Replication factor C, 97.8 5.7E-05 1.2E-09 78.7 8.5 157 201-389 34-203 (360)
500 COG4608 AppF ABC-type oligopep 97.8 5E-05 1.1E-09 78.3 7.8 108 237-354 34-170 (268)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-120 Score=989.15 Aligned_cols=690 Identities=61% Similarity=0.999 Sum_probs=642.6
Q ss_pred CccchHHhhhcCCCCeEEEecccCCCCcEEEECHHHHHhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHH
Q 003623 15 RDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVR 94 (807)
Q Consensus 15 ~~~~~~~~~~~~~p~~~~v~~~~~~~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (807)
.+++++|+..+..++.+.|.+ .++..+.+.+++..|.++++..| |.+.|+.+...++.+...+. ....+.++...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r 77 (693)
T KOG0730|consen 2 ESPSTAILPVKCPQNNLVVLS-INDDASVVVLSEGAMDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSR 77 (693)
T ss_pred CcccccccccccCCCCeEEec-CCCccchheecHHHHhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheec
Confidence 367899999988888999988 45555589999999999999999 99999886666554443344 778899999999
Q ss_pred hhcccCCCCeEEEEEccCCCCCcEEEeccccccccCcchhhHHHHhHHHhhhcCcccccCcEEEEeecceeEEEEEEEec
Q 003623 95 SNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD 174 (807)
Q Consensus 95 ~~~~~~~~~~v~v~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~ 174 (807)
.++.++.|+.|.+++++.++.+.++.+.|+..+..++....++.+.+.|+....+|+..|+++ ..+..+.|+++...
T Consensus 78 ~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (693)
T KOG0730|consen 78 SNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEGIAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELD 154 (693)
T ss_pred cchhhcccceecccCCCCccccceeeeeehhhccccchhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccc
Confidence 999999999999999888888888999999988888888888889999999888999999987 33455678888877
Q ss_pred CCccEEeCCCcEEEecCCCccccccccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCc
Q 003623 175 PPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSG 254 (807)
Q Consensus 175 p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtG 254 (807)
|.. ++.++|.+.+.+++......+ +.+++ .++||+..++..+++++.+|+++|..+..+|+.+++++|+|||||||
T Consensus 155 ~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~G 230 (693)
T KOG0730|consen 155 PSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTG 230 (693)
T ss_pred cch--hcCccchhhhcCCCccccccc-ccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCC
Confidence 766 788999999888887655444 46677 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CeEEEEccchhhcCCcCCCchhHHHHHHHHHH
Q 003623 255 KTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 255 KTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
||.+++++|++.++.++.++++++++++.|++++++|..|+++...+ |+++||||+|.+++++....+ +++|++.||+
T Consensus 231 kt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqll 309 (693)
T KOG0730|consen 231 KTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLL 309 (693)
T ss_pred hHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999887666 8899999999
Q ss_pred HHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchh
Q 003623 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 413 (807)
++|+++....+++|+++||+|+.||+++|| |||++++++..|+..+|.+|++.+++++++.+++++..++..||||+|+
T Consensus 310 tL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGa 388 (693)
T KOG0730|consen 310 TLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGA 388 (693)
T ss_pred HHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999889999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccCCCCCccceeeccCCcccccccchhhhhhhh
Q 003623 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKREL 493 (807)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l 493 (807)
|+..+|++|++.+.++ ++++|..|+..++|+++|+..++.|+++|+||||++++|+.|
T Consensus 389 DL~~l~~ea~~~~~r~----------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 389 DLAALCREASLQATRR----------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHHHHHHHhhh----------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999999988765 467899999999999999999999999999999999999999
Q ss_pred hhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhC
Q 003623 494 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQS 573 (807)
Q Consensus 494 ~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~ 573 (807)
++.|.||+++++.|.++|+++++|||||||||||||++||++|++++.+|++|++++++++|+|+||+.++++|++|++.
T Consensus 447 q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCC
Q 003623 574 APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653 (807)
Q Consensus 574 ~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~ 653 (807)
+||||||||||+++..|+++. +++.+||+++||++|||+...++|+||||||||+.||+|++||||||++||||+||
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred CCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 999999999999999997432 37899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccc
Q 003623 654 EESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVA 733 (807)
Q Consensus 654 ~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (807)
.+.|.+||+.+++++++..++|+..||+.|+|||||||.++|++|++.|+++.++ ..
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-----------------------a~ 660 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-----------------------AT 660 (693)
T ss_pred HHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-----------------------cc
Confidence 9999999999999999999999999999999999999999999999999999875 34
Q ss_pred cccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003623 734 EIKAVHFEESMKYARRSVSDADIRKYQAFAQT 765 (807)
Q Consensus 734 ~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~ 765 (807)
.|+.+||++|++.++++++..+++.|++|.+.
T Consensus 661 ~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 661 EITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred cccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 79999999999999999999999999999764
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-114 Score=931.52 Aligned_cols=556 Identities=49% Similarity=0.858 Sum_probs=510.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|.||||+++++.+|.+++.. ++||+.|.++|+.|++|||||||||||||+||++||++++.+|+.|+++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 367899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccC----CeEEEEEecCCCCCCC
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 358 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~atn~~~~ld 358 (807)
.|+++++++.+|+.|....|||+||||||++.++|.....++++|++.||++.||++... ..|+||||||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999998754 5799999999999999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcccccc--
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 436 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 436 (807)
|+|||.|||+++|.+++|++.+|.+||+..++++.+..+.++.++|..|+||+|+||.+||.+|+.-++++..+....
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886652210
Q ss_pred -----c-c--------ch--h---------------------------hHHhhhccccchhHHhhhhccCCCCCccceee
Q 003623 437 -----E-D--------ET--I---------------------------DAEILNSMAVTDEHFKTALGTSNPSALRETVV 473 (807)
Q Consensus 437 -----~-~--------~~--i---------------------------~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~ 473 (807)
. + +. + ..+....+.+..+||..|+..++|++.|+.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0 0 00 0 01233456788999999999999999999999
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
.+|+++|+|||++++++.+|...|.||+++++.|+.+|+..|.|+||+||||||||+||||+|++.+.|||+|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
+|||+||+.+|.+|++||.++||||||||||+|++.|+... ...+.|++||||++|||++.+.+|+|||||||||.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999997753 467899999999999999999999999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHcc--cCChhhHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLR--KSPVSKDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~~~~~la~~~~--g~sg~di~~l~~~A~~~a~~~~~~~ 709 (807)
|||+|||||||+.+|+++|+.++|.+||+.+++ +.++..|+|+++||+.+. |||||||.++|++|...|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 789999999999999876 9999999999999999999998752
Q ss_pred HHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccC
Q 003623 710 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 771 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~~~~~ 771 (807)
.. .+..... .......+++.||++|++.++||+++.+.+.|+...++++-+..
T Consensus 741 ~~-------~~~~~~~--~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~ 793 (802)
T KOG0733|consen 741 ID-------SSEDDVT--VRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTA 793 (802)
T ss_pred cc-------ccCcccc--eeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhccccc
Confidence 21 0110000 00113358999999999999999999999999999988764443
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-100 Score=914.19 Aligned_cols=722 Identities=51% Similarity=0.851 Sum_probs=638.1
Q ss_pred eEEEecccCC--CCcEEEECHHHHHhcCCCCCCEEEEe-eCCCceEEEEEEc--CCCCCCCeEEEcHHHHhhcccCCCCe
Q 003623 30 RLVVDEAIND--DNSVVVLHPDTMEKLQFFRGDTILIK-GKKRKDTVCIALA--DDTCEEPKIRMNKVVRSNLRVRLGDV 104 (807)
Q Consensus 30 ~~~v~~~~~~--~~~~v~l~~~~~~~l~~~~g~~v~i~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~ 104 (807)
.++|.++.++ |+++++|+|++|++||+.+||+|.|. |++ .+++.+|+ +++.+.+.|+|++.+|.|+|+++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (733)
T TIGR01243 3 ELRVAEAYPRDVGRGIVRIDRQTAARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDT 80 (733)
T ss_pred EEEehhhhccCCCCCeEeeCHHHHHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCe
Confidence 3578888654 89999999999999999999999999 544 45777776 45788999999999999999999999
Q ss_pred EEEEEccCCCCCcEEEeccccccccCcchhhHHHHhHHHhhhcCcccccCcEEEEeecceeEEEEEEEecCCccEEeCCC
Q 003623 105 VSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPD 184 (807)
Q Consensus 105 v~v~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~ 184 (807)
|+|+++ .++.+++|.+.|..... .+..+..+++.++. .+++..|+.+.+........|+|+++.|.+++.++..
T Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 154 (733)
T TIGR01243 81 VTVERA-EVKEAKKVVLAPTQPIR---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEA 154 (733)
T ss_pred EEEeec-CCCccceEeeccccccc---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCC
Confidence 999995 47889999988864321 12344567777775 4789999998876444457899999999999999999
Q ss_pred cEEEecCCCccccccccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 003623 185 TEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264 (807)
Q Consensus 185 t~i~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (807)
|.+.+...+.........+.++|+||+|+++++++|++++.+|+.+|++++++|+.+++++|||||||||||++++++|+
T Consensus 155 t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 155 TEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 99887655543222224577899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCe
Q 003623 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (807)
Q Consensus 265 ~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (807)
+++.+++.++++++.+++.|+.+..++.+|+.+....|++|||||+|.++++++...++.+.+++.+|+++++++..+..
T Consensus 235 ~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred HhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999988777777888999999999999988889
Q ss_pred EEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHH
Q 003623 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (807)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (807)
++||++||+++.+|+++++++||+..++++.|+.++|.+||+.+.+.+.+..+.++..++..++||+++|+..+|+++++
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~ 394 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHhhcc--ccccccchhhHHhhhccccchhHHhhhhccCCCCCccceeeccCCcccccccchhhhhhhhhhcccccCC
Q 003623 425 QCIREKMD--VIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVE 502 (807)
Q Consensus 425 ~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 502 (807)
.++++... ........+..+......++.+||..++..+.|+.+++...+.|.++|++++|++.+|+.|.+.+.||+.
T Consensus 395 ~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~ 474 (733)
T TIGR01243 395 AALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474 (733)
T ss_pred HHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhh
Confidence 98887544 2222223344444556778999999999999999999988899999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcc
Q 003623 503 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582 (807)
Q Consensus 503 ~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDE 582 (807)
+++.|.++++.+++|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||
T Consensus 475 ~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHH
Q 003623 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 662 (807)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 662 (807)
||++++.|+... .....++++++||++|||+....+++||+|||+|+.||||++||||||++|+||+||.++|.+||+
T Consensus 555 id~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 555 IDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred hhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 999999886532 234678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHH
Q 003623 663 ACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEE 742 (807)
Q Consensus 663 ~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~ 742 (807)
.++++.++..++++..||+.++||||+||.++|++|++.|+++.+........ .. ......+...|+++||++
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~--~~-----~~~~~~~~~~i~~~~f~~ 705 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL--EV-----GEEEFLKDLKVEMRHFLE 705 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh--hc-----ccccccccCcccHHHHHH
Confidence 99999999999999999999999999999999999999999987653210000 00 000001234799999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhh
Q 003623 743 SMKYARRSVSDADIRKYQAFAQTLQQ 768 (807)
Q Consensus 743 al~~~~~s~s~~~~~~y~~~~~~~~~ 768 (807)
|+++++||+++++++.|++|.++|..
T Consensus 706 al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 706 ALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999963
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-85 Score=718.85 Aligned_cols=614 Identities=36% Similarity=0.594 Sum_probs=495.2
Q ss_pred hhHHHHhHHHhhhcCcccccCcEEEEee------------------cceeEEEEEEEecCCc---cEEeCCCcEEEecCC
Q 003623 134 NLFDAYLKPYFTEAYRPVRKGDLFLVRG------------------GMRSVEFKVIETDPPE---YCVVAPDTEIFCEGE 192 (807)
Q Consensus 134 ~~~~~~l~~~~~~~~~~v~~g~~~~~~~------------------~~~~~~f~v~~~~p~~---~~~~~~~t~i~~~~~ 192 (807)
+..+..++.||. ..|.+..||+|++.. ....++|+|++.+|.. +++..+.|.++..+.
T Consensus 304 ~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~~ 382 (953)
T KOG0736|consen 304 GNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVGA 382 (953)
T ss_pred hHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEccc
Confidence 456668899997 568899999998632 1246789999999853 456667788877654
Q ss_pred Ccccc--c-cccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 003623 193 PVRRE--D-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (807)
Q Consensus 193 ~~~~~--~-~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~ 269 (807)
...+. - .....-.++-...+.+..+..+..++.-+ ..|. ..++.....+||+|+||||||++++++|.+++.+
T Consensus 383 ~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p~-~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h 458 (953)
T KOG0736|consen 383 TSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSPQ-KQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH 458 (953)
T ss_pred cccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCcc-cCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCc
Confidence 43320 0 00000012223444555444444443322 1221 1223445579999999999999999999999999
Q ss_pred EEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhh---ccccCCeEE
Q 003623 270 FFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHVI 346 (807)
Q Consensus 270 ~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---~~~~~~~v~ 346 (807)
++.++|.++.....+..+.++...|+.++...|+|||+-++|.+.-+... ....++...+..++. .-.....++
T Consensus 459 ~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~i 535 (953)
T KOG0736|consen 459 LLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVI 535 (953)
T ss_pred eEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999999999999998855433 233455555544443 334677899
Q ss_pred EEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHH
Q 003623 347 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQC 426 (807)
Q Consensus 347 vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 426 (807)
||++|+..+.+++.+++ .|.++|.++.|++++|.+||+.+.....+..++.+..++.+|.||+.+++..++......+
T Consensus 536 vv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~ 613 (953)
T KOG0736|consen 536 VVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAA 613 (953)
T ss_pred EEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHH
Confidence 99999999999999998 6778999999999999999999999999999999999999999999999999988764433
Q ss_pred HHhhcccc---ccccchhhHHhhhccccchhHHhhhhccCCCCCccc-eeeccCCcccccccchhhhhhhhhhcccccCC
Q 003623 427 IREKMDVI---DLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE-TVVEVPNVNWEDIGGLENVKRELQETVQYPVE 502 (807)
Q Consensus 427 ~~~~~~~~---~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 502 (807)
..+..... ......-.........++++||.+++...+...... ....+|+|+|+||||++++|..+.+.|..|++
T Consensus 614 ~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~ 693 (953)
T KOG0736|consen 614 KTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLK 693 (953)
T ss_pred HHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCccc
Confidence 22211110 000000111122346788999999988665332222 23468999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcc
Q 003623 503 HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDE 582 (807)
Q Consensus 503 ~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDE 582 (807)
|+++|.. |+++..|||||||||||||.+|||+|.++..+|++|+|+||+++|+|+||+++|++|++||..+||||||||
T Consensus 694 hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 694 HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDE 772 (953)
T ss_pred Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEecc
Confidence 9999988 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--CCCcEEEeecCCCCCCCCccccCCCCCcceeecCCC-CHHHHHH
Q 003623 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEESRLQ 659 (807)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p-~~~~r~~ 659 (807)
+|+++++||.+ ++++++++|+++|||.||||+. ....|+|||||||||.|||||+||||||+.+|++++ |.+.+..
T Consensus 773 LDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 773 LDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred ccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 99999999887 6778999999999999999998 567899999999999999999999999999999988 6788999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHc-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHH
Q 003623 660 IFKACLRKSPVSKDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAV 738 (807)
Q Consensus 660 Il~~~l~~~~~~~~~~~~~la~~~-~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 738 (807)
||+...+++.++.++|+.++|+.+ ..|||||+.++|.+|.+.|++|.+........ .. ++.......|+++
T Consensus 852 vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~-------~~-~e~~~~~v~V~~e 923 (953)
T KOG0736|consen 852 VLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTI-------SE-EEQESSSVRVTME 923 (953)
T ss_pred HHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccc-------cc-cccCCceEEEEHH
Confidence 999999999999999999999987 57999999999999999999998765421100 00 1122334579999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003623 739 HFEESMKYARRSVSDADIRKYQAFAQTLQ 767 (807)
Q Consensus 739 ~f~~al~~~~~s~s~~~~~~y~~~~~~~~ 767 (807)
||.+++++..||+|.+++.+|+..+.+|+
T Consensus 924 Dflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 924 DFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999996
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-73 Score=617.65 Aligned_cols=499 Identities=37% Similarity=0.572 Sum_probs=427.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~----~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
..+.+|||+||+|||||.|++++++++. +++..++|+.+.........+.++.+|..+.+++|+|+++|++|.++.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456799999999999999999999874 567889999887776667778899999999999999999999999987
Q ss_pred CcCCC---chhHHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC
Q 003623 316 KREKT---HGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (807)
Q Consensus 316 ~~~~~---~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~ 391 (807)
..+.. .+....++...|...+..+.. +..+.|||+.+....++|.|.++++|...+.++.|+..+|.+||...+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 33222 223344544444444444443 34578999999999999999999999999999999999999999987765
Q ss_pred CCC-CCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccCCCCCccc
Q 003623 392 MKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRE 470 (807)
Q Consensus 392 ~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~ 470 (807)
-.. ....+++-++..|+||...|+..++.+|...++...... ....++.++|.++++.+.|.++|.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 431 122345669999999999999999999988877433211 112678899999999999999998
Q ss_pred eeeccC-CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEecc
Q 003623 471 TVVEVP-NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549 (807)
Q Consensus 471 ~~~~~~-~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~ 549 (807)
.....+ .++|+||||+.++|+.|++.++||.++|..|...+++.+.|||||||||||||+||.++|..++.+||+|+|+
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 766554 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC
Q 003623 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (807)
+++++|+|.||+++|.+|.+|+...|||+||||+|+++++||. +..++++||+||||++|||.+...+|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh---DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH---DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC---CCCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 9999999999999999999999999999999999999999986 4568999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHH
Q 003623 630 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~ 709 (807)
||.|||||+||||+|+.+|+|+|+..+|.+|++.......+..++|++.+|.+|+|||||||..++..|.+.|+++.+.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHhhhcCCccccccccccccccccHHHHHHH--HhhcCCCCCHHHHHHHHHHHHHHhhcc
Q 003623 710 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEES--MKYARRSVSDADIRKYQAFAQTLQQSR 770 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~a--l~~~~~s~s~~~~~~y~~~~~~~~~~~ 770 (807)
... ....+.++...+..- ....+||.+.-+-+.+.+...+|..++
T Consensus 893 ~~~----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 EDE----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cCc----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 320 011222444433333 347788999888888888888886644
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-67 Score=601.42 Aligned_cols=489 Identities=56% Similarity=0.922 Sum_probs=452.8
Q ss_pred ccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEE
Q 003623 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 305 (807)
Q Consensus 226 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il 305 (807)
+|+.+++.++.+++.++++++++||||+|||++++.++.. +..+..++++++.+++.+..+..++.+|+.+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4778899999999999999999999999999999999999 666688899999999999999999999999999999999
Q ss_pred EEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHH
Q 003623 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 385 (807)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il 385 (807)
++||++.+.+.+......+..+++.+++..++++. +..+++++.+|.+..+++++++++||+.++.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999887667788999999999999999 55588899999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccCCC
Q 003623 386 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNP 465 (807)
Q Consensus 386 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~p 465 (807)
..+...+....+.++..++..++||.++++..+++++.....++.. ........++.+++..++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999999988888999999999999999999999999888777642 01123456788999999999988
Q ss_pred CCccceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEE
Q 003623 466 SALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 545 (807)
Q Consensus 466 s~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~ 545 (807)
+ +......+.+.|++++|++.+|+.+++.+.+++.+++.|...++.+++|+|||||||||||+||+++|++++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 7 67778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEee
Q 003623 546 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 546 v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~ 625 (807)
+++++++++|+|+++++++.+|..|++.+||||||||+|++++.|+.+.+ +...|++++||++||++....+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999876432 234799999999999999999999999
Q ss_pred cCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC--CCCcccHHHHHHHcccCChhhHHHHHHHHHHHHH
Q 003623 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~ 703 (807)
|||+|+.+|+|++||||||+.|+||+||.++|.+||+.+++... +..++++..+++.++||||+||..+|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998543 4688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003623 704 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAF 762 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~ 762 (807)
++.. ...++.+||..|++.++|+++ |++|
T Consensus 464 ~~~~------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 9863 237999999999999999999 8777
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-62 Score=516.90 Aligned_cols=599 Identities=29% Similarity=0.444 Sum_probs=450.9
Q ss_pred EEEecccCC---CCcEEEECHHHHHhcCCCCCCEEEEeeCCCceEEEEEEcCCCCCCCeEEEcHHHHhhcccCCCCeEEE
Q 003623 31 LVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSV 107 (807)
Q Consensus 31 ~~v~~~~~~---~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~v 107 (807)
++|..+... -.+.++++|...++-+ +..+... ..++...+...+++|.|.++..+|+|+++++||.|.|
T Consensus 11 ~~v~k~ps~e~altn~a~v~~~DF~~~~-----~~~vd~~---~~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~V 82 (744)
T KOG0741|consen 11 FQVTKCPSNELALTNCAYVSPSDFRQFQ-----VIIVDNF---HYVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVEV 82 (744)
T ss_pred eeeecCCchhhhccCcceeCccccccce-----eeEEeee---eEEEEeeccCCCCCceeccchhhhhhhhcccCceeEE
Confidence 566555432 3557888888775422 2233322 3566666777899999999999999999999999999
Q ss_pred EEccCCCC---CcEEEecc----cc-ccccCcchh-hHHHHhHHHhhhcCcccccCcEEEEeecc-eeEEEEEEEec---
Q 003623 108 HQCADVKY---GKRVHILP----VD-DTIEGVTGN-LFDAYLKPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETD--- 174 (807)
Q Consensus 108 ~~~~~~~~---a~~v~~~~----~~-~~~~~~~~~-~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~--- 174 (807)
.++..... ...+.+.. .. .+...++.+ +..++.+.|- ..++.+|+.+.+...+ ..+.++|..++
T Consensus 83 ~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D 159 (744)
T KOG0741|consen 83 KPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQYN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAFD 159 (744)
T ss_pred EecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHHhc---CcccCCccEEEEEecCceEeeeEEEEEeeec
Confidence 98753222 22333211 11 111223333 2333333332 4578999988776543 45667776653
Q ss_pred C--------------CccEEeCCCcEEEecCCCcc----------ccccccC--CCCCcc--cccChHHHHHHH-HHHHH
Q 003623 175 P--------------PEYCVVAPDTEIFCEGEPVR----------REDENRL--DEVGYD--DVGGVRKQMAQI-RELVE 225 (807)
Q Consensus 175 p--------------~~~~~~~~~t~i~~~~~~~~----------~~~~~~~--~~~~~~--di~G~~~~~~~l-~~~i~ 225 (807)
| -.++++..+|.|.+...... +.....+ ++..|+ .|||+++++..| |++..
T Consensus 160 ~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFA 239 (744)
T KOG0741|consen 160 PGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFA 239 (744)
T ss_pred cccccCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCCCChhhcccccchHHHHHHHHHHHH
Confidence 3 13588899999865432211 0111111 334444 389999999998 88888
Q ss_pred ccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEechhhhhhhhchhHHHHHHHHHHHHhc----
Q 003623 226 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-FFCINGPEIMSKLAGESESNLRKAFEEAEKN---- 300 (807)
Q Consensus 226 ~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~---- 300 (807)
.....|++.+++|+.+-+|+|||||||||||.+||.|.+.+++. ...|||+++.++|+|++++++|.+|.+|+..
T Consensus 240 sRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 240 SRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred hhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 88999999999999999999999999999999999999999865 5789999999999999999999999999763
Q ss_pred ----CCeEEEEccchhhcCCcCCCch--hHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeC
Q 003623 301 ----APSIIFIDEIDSIAPKREKTHG--EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 301 ----~p~il~iDEid~l~~~~~~~~~--~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~ 374 (807)
.-.||++||||++|.+|+...+ .+.+.+++||++.|||..+-.+++|||.||+.+.||+||.|||||...+++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 2379999999999999987543 6889999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcCCC----CCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccc
Q 003623 375 VPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMA 450 (807)
Q Consensus 375 ~P~~~~R~~Il~~~~~~~~----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 450 (807)
+||+..|++||++|+++|. +.+++|+.++|..|.+|+|+.|..+++.|...++.+....- .....+......+.
T Consensus 400 LPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 400 LPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLK 477 (744)
T ss_pred CCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC--cceecCchhhhhee
Confidence 9999999999999998885 56899999999999999999999999999988887765432 12334455567889
Q ss_pred cchhHHhhhhccCCCCCccc-----eeeccCCccccccc--chhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCC
Q 003623 451 VTDEHFKTALGTSNPSALRE-----TVVEVPNVNWEDIG--GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 523 (807)
Q Consensus 451 v~~~d~~~al~~~~ps~~~~-----~~~~~~~~~~~~i~--g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~Gp 523 (807)
+++.||..|+..++|..... ..+....+.|.... .+++-+-. ....+.-..++-.++||+||
T Consensus 478 V~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~ll-----------v~qvk~s~~s~lvSvLl~Gp 546 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLL-----------VQQVKNSERSPLVSVLLEGP 546 (744)
T ss_pred ecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHH-----------HHHhhccccCcceEEEEecC
Confidence 99999999999998875321 11122334554321 11111110 11112223455667999999
Q ss_pred CCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCch----HHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCc
Q 003623 524 PGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGG 599 (807)
Q Consensus 524 pGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se----~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 599 (807)
||+|||+||..+|..+++||+.+-.++-+ +|-+| .+++.+|+.|++++.+||++|+|+.|...-.- ...
T Consensus 547 ~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI----GPR 619 (744)
T KOG0741|consen 547 PGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI----GPR 619 (744)
T ss_pred CCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc----Cch
Confidence 99999999999999999999999877654 45554 36999999999999999999999999876422 134
Q ss_pred cHHHHHHHHHHHHcCCCC-CCcEEEeecCCCCCCCCc-cccCCCCCcceeecCCCCH-HHHHHHHH
Q 003623 600 AADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDP-ALLRPGRLDQLIYIPLPDE-ESRLQIFK 662 (807)
Q Consensus 600 ~~~~v~~~lL~~ld~~~~-~~~v~vi~aTn~~~~ld~-allrpgRf~~~i~~~~p~~-~~r~~Il~ 662 (807)
+++.+++.|+..|...++ +++.+|++||.+.+.|.. .++. .|+..|++|..+. ++..++++
T Consensus 620 fSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 620 FSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 678888889888888754 468999999999887766 4444 8999999997654 66666654
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-59 Score=481.12 Aligned_cols=253 Identities=48% Similarity=0.817 Sum_probs=242.3
Q ss_pred eeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccch
Q 003623 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l 551 (807)
..+.|+++|+||||+++..+++++.++.|+++|++|..+|+.||+|+|||||||||||+||||+|++.+++||.|.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC
Q 003623 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (807)
..+|+|+..+.+|++|+.|+..+||||||||||+++.+|-++..+.+....|.+-+||++|||+...++|=||+||||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 99999999999999999999999999999999999999977655556678899999999999999999999999999999
Q ss_pred CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003623 632 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (807)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~ 711 (807)
.||||||||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.||+.++|+|||||+++|.+|++.|+|+.
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----- 376 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----- 376 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhhcCCccccccccccccccccHHHHHHHHhhcCC
Q 003623 712 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 749 (807)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~ 749 (807)
...||++||.+|.+++-.
T Consensus 377 --------------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --------------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --------------------cCeecHHHHHHHHHHHHh
Confidence 347999999999988743
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-55 Score=449.84 Aligned_cols=284 Identities=43% Similarity=0.699 Sum_probs=257.9
Q ss_pred eeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 003623 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~ 550 (807)
.+...|+++|+||.|+.++|+.|++.+..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+++..|+.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 445678999999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred hhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCC----CCcEEEeec
Q 003623 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGA 626 (807)
Q Consensus 551 l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~----~~~v~vi~a 626 (807)
+.++|-|+||+.+|-+|+.|+..+|++|||||||+|+.+|+.+ +..++++|+.++||.+|||+.. .+.|+|+||
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAA 358 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAA 358 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEec
Confidence 9999999999999999999999999999999999999999876 4467899999999999999853 245999999
Q ss_pred CCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHH
Q 003623 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
||.||.||.||+| ||.+.||+|+||.++|..+++..++..++.++++++.||+.++||||+||.++|++|.+.++|+.
T Consensus 359 TN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~ 436 (491)
T KOG0738|consen 359 TNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRK 436 (491)
T ss_pred cCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003623 707 IEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 767 (807)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~ 767 (807)
+........+.... ++...+|+.+||++|+.+++||++..++.+|++|.+.|.
T Consensus 437 i~g~~~~ei~~lak--------E~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 437 IAGLTPREIRQLAK--------EEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred HhcCCcHHhhhhhh--------hccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 76432221111100 011247999999999999999999999999999999985
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-50 Score=416.06 Aligned_cols=246 Identities=52% Similarity=0.859 Sum_probs=230.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..++++|+||||+++|+++|++.+++|+.+|++|+.+|+.||+|||||||||||||+||+++|++.++.|+.+.+++++.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHH---HHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~---~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
+|.|+....+|.+|+.|+.+.||||||||||++..+|-.....-+ +|..-+|++.|||+..+.+|-||+|||+++.|
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L 303 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL 303 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence 999999999999999999999999999999999988765432222 45566788999999999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||||.||||||+.|+||+|+.++|.+||++|+++|.+.++++++.++..+.|++|+|+.++|.+|++.++|...
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R------ 377 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR------ 377 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
..++++||.+|..++
T Consensus 378 -----------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKV 392 (406)
T ss_pred -----------CeecHHHHHHHHHHH
Confidence 457889999987765
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-50 Score=401.49 Aligned_cols=293 Identities=34% Similarity=0.643 Sum_probs=259.7
Q ss_pred eeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 003623 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~ 550 (807)
.+.+.|++.|+|+.|++..|+.|++.+..|++.|.+|.. +..|.+||||||||||||++||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 456889999999999999999999999999999999987 7788999999999999999999999999999999999999
Q ss_pred hhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-CCCcEEEeecCCC
Q 003623 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 629 (807)
Q Consensus 551 l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-~~~~v~vi~aTn~ 629 (807)
|+++|.|+||+.++.+|+.||.+.|+||||||||++++.|+.. .+..++|+..+||.+|.|+. +..+|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999988653 35678999999999999985 4578999999999
Q ss_pred CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHH
Q 003623 630 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~ 708 (807)
||.||.|+.| ||++.||+|+|+..+|..+|+.++...+ .-.+.|+.+|+++|+||||+||.-++++|.+..+|....
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 9999999999999999999999998875 446789999999999999999999999999999999877
Q ss_pred HHHHHHhhhcCCccc--------cccc-------------cccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003623 709 KDIERERRRSENPEA--------MEED-------------VEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 767 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~--------~~~~-------------~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~ 767 (807)
+.+........+... .+.+ +.--.++||+.||..+|..++|.++..++.+.++|.+.|.
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 766543222111110 0000 0112568999999999999999999999999999999987
Q ss_pred hc
Q 003623 768 QS 769 (807)
Q Consensus 768 ~~ 769 (807)
++
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 64
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-48 Score=376.52 Aligned_cols=256 Identities=43% Similarity=0.746 Sum_probs=240.7
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
.+|+-.++-+||++...+.+++.++.|.+||++|..+|+..|+|+|||||||||||.||+++|+...+.||+|+++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 35777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
+|+|+..+.+|++|-.||..+|+|||.||||++...|..+++..+....|.+-+||++|||++..+++-||.||||.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999997765555566788999999999999999999999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
||||+||||+|+.|+||+|+.++|.+|++.+.+++.+...+++..+|+...|.||+++..+|.+|.+.|+|+.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHH
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 754 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~ 754 (807)
...||++||+-|..++-..-++.
T Consensus 373 ------------------rvhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 373 ------------------RVHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred ------------------hccccHHHHHHHHHHHHhccccc
Confidence 34799999999998775444443
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-48 Score=377.13 Aligned_cols=249 Identities=44% Similarity=0.747 Sum_probs=236.8
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
+.|++++.|+||++-.|+++++.++.|+.+.++++.+|+.||+|+|||||||||||+|++++|+...+.||+|.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
+|.|+..+.+|.+|..|+..+|+||||||||+++.+|-....+.+....|++-+||++|||+....+|-||++|||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999996554455566789999999999999999999999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
||||+||||+|+.|+||+||..+++-+|.....++.+..++|++.+....+..||+||.+||++|.+.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
.-.|...||++|....
T Consensus 381 ------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ------------------ceeeeHHHHHHHHHhh
Confidence 2268899999998854
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.1e-45 Score=411.01 Aligned_cols=398 Identities=26% Similarity=0.397 Sum_probs=306.4
Q ss_pred CCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhH
Q 003623 301 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (807)
Q Consensus 301 ~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~ 380 (807)
.|.++++.+++.++.+. .++..|.++....+...+.+|+.+.+ -.+++.|.+ +-..+++++|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI---------SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcch---------HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 37899999999887321 13333434333333444445544432 357888874 56788999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhh
Q 003623 381 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTA 459 (807)
Q Consensus 381 R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~a 459 (807)
..++++........ .++..++.+++.+.|++..++..++..+... . ..+ ..+... ...+...+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~----~-~~~-------~~~~~~---~i~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIAT----Y-KTI-------DENSIP---LILEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----c-CCC-------ChhhHH---HHHHHHHHH
Confidence 99999877654332 3456789999999999999988777653221 0 000 000000 000011111
Q ss_pred hccCCCCCccceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh
Q 003623 460 LGTSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 460 l~~~~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~ 539 (807)
+.. ...- ....+..+|++|+|++.+|+.+.+.... .......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~---~~~l--e~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQ---TEIL--EFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhh---hccc--cccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 111 1000 1113567899999999999999875432 2334567799999999999999999999999999999
Q ss_pred CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCC
Q 003623 540 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 619 (807)
Q Consensus 540 ~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~ 619 (807)
+.+|+.++++.+.++|+|+++++++.+|+.|+..+||||||||||.++..+... ..++...+++++||+.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2245789999999999985 356
Q ss_pred cEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC--CCcccHHHHHHHcccCChhhHHHHHHH
Q 003623 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV--SKDVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 620 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~~~g~sg~di~~l~~~ 697 (807)
+|+||||||+++.|||+++||||||+.++|++|+.++|.+||+.++++... ..+.++..+|+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999988643 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q 003623 698 ACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQAFAQT 765 (807)
Q Consensus 698 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s--~s~~~~~~y~~~~~~ 765 (807)
|+..|..+. .+++.+||..|+.++.|+ ...++++.+++|...
T Consensus 440 A~~~A~~~~--------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 440 AMYIAFYEK--------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHcC--------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 998886542 368999999999999996 577899999999875
No 15
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=407.18 Aligned_cols=244 Identities=40% Similarity=0.708 Sum_probs=229.3
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
..+++|+|+-|+++.|++|.+.+.+ ++.|+.|.++|-+.|+||||+||||||||+||+|+|++.+.||+...|+++-.+
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3478999999999999999999886 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
|||...+.+|.+|+.|++.+||||||||||++.++|.... ....+..+||||.+|||+..+.+|+||+|||+|+.||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999997642 2278999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~ 714 (807)
+||+||||||++|.+|.||...|.+||+.|+++.++..++|+.-||+-|.|||||||.++++.|+..|..+.
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-------- 525 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-------- 525 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred hhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 715 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...|+++|++-|-.++
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 3468999999886543
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-46 Score=406.20 Aligned_cols=271 Identities=43% Similarity=0.760 Sum_probs=247.9
Q ss_pred ccccccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 003623 196 REDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 275 (807)
Q Consensus 196 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~ 275 (807)
|+..-.++.++|+||||+++...+|..+|.+|.++|++|+.+|+..|.|||||||||||||.||+++|++.+..|+.|.|
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 33344678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC
Q 003623 276 PEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355 (807)
Q Consensus 276 ~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~ 355 (807)
++++++|+|+++..+|.+|+.|+...|||||+||+|+|++.|+........|+++||+..|||+..+..|.|||+||+|+
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 99999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhc--CCCCCCchhHHHHHHhhC--CCchhhHHHHHHHHHHHHHHhhc
Q 003623 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 356 ~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
-||||+.|||||++.+++++|+.++|.+||+.+++ +.++..+++++.|+..+. ||+|+||..||++|++.+++...
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 778899999999999887 99999999999999999998876
Q ss_pred cccccccchhhHHhhhccccchhHHhhhhccCCCCC
Q 003623 432 DVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSA 467 (807)
Q Consensus 432 ~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~ 467 (807)
..++.......... ....++..+|..|++.++|+.
T Consensus 739 ~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred hhccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 54433322221111 145678899999999998874
No 17
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=411.70 Aligned_cols=252 Identities=49% Similarity=0.843 Sum_probs=240.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..++++|+||||+++.+.+|++.+.+|++||+.|.++|+.|++|||||||||||||++|+++|++.+..|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHH
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~a 360 (807)
+|+|+++..++.+|+.|++..|||+|+||||+++..|+...+.+..|++++|++.|||+....+|+|||+||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998776788999999999999999999999999999999999999
Q ss_pred HHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccch
Q 003623 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 440 (807)
Q Consensus 361 l~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 440 (807)
|.||||||+.|++++||.+.|.+||+.++++|++.+++++..+|..|+||+|+|+..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHHhhhccccchhHHhhhhccCCCCC
Q 003623 441 IDAEILNSMAVTDEHFKTALGTSNPSA 467 (807)
Q Consensus 441 i~~~~~~~~~v~~~d~~~al~~~~ps~ 467 (807)
...+..++|.++++..+++.
T Consensus 659 -------a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred -------cccccHHHHHHHHHhhcccC
Confidence 34578899999998887653
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-46 Score=369.75 Aligned_cols=267 Identities=39% Similarity=0.707 Sum_probs=243.9
Q ss_pred CCCCccceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeE
Q 003623 464 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (807)
Q Consensus 464 ~ps~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~ 543 (807)
.|+...-..-+.|++++.|+||..+..+.|++.++.|+.+|+.|..+|+.||+|+|||||||||||.+|+++|+..++.|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34443334557899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 003623 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 544 i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~v 623 (807)
|+|-+++|..+|+|+..+.+|++|+.|+....|||||||||++.+.|-....+.+....|.+-+|+++|||+....++-|
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999988544333345567888899999999999999999
Q ss_pred eecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHH
Q 003623 624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 624 i~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~ 703 (807)
++|||||+.|||||+||||+|+.++|.+||.+.|.+||+.+.+.+.+..++-++.||+.+.+-+|++|+.+|.+|.+.|+
T Consensus 320 lmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfai 399 (435)
T KOG0729|consen 320 LMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAI 399 (435)
T ss_pred EeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003623 704 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFA 763 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~ 763 (807)
+.. ....|..||.+|+.++ ++.|.+|.
T Consensus 400 rar-------------------------rk~atekdfl~av~kv--------vkgy~kfs 426 (435)
T KOG0729|consen 400 RAR-------------------------RKVATEKDFLDAVNKV--------VKGYAKFS 426 (435)
T ss_pred HHH-------------------------hhhhhHHHHHHHHHHH--------HHHHHhcc
Confidence 875 2358999999999887 55565543
No 19
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=374.35 Aligned_cols=248 Identities=40% Similarity=0.725 Sum_probs=234.3
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
.|.-+|.||||++...+++++.++.|+.||+.+..+|+.||+|++|||+||||||.||+|+|+...+.|+++-+++|+.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
|.|+..+.+|++|+.|..++|+|+||||||++..+|-++++.......|.+-+||++|||+.....|-||+|||+.+.||
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD 338 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccC
Confidence 99999999999999999999999999999999999966554444556778889999999999999999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~ 714 (807)
|||+||||+|+.|.||.||...++.||..+..++.+..+++++.+...-+.+|||||.++|.+|.++|+|+.
T Consensus 339 PaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer-------- 410 (440)
T KOG0726|consen 339 PALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER-------- 410 (440)
T ss_pred HhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999998899999999999999999999986
Q ss_pred hhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 715 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...|+++||..|.+++
T Consensus 411 -----------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 -----------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------------HhhccHHHHHHHHHHH
Confidence 2369999999998876
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-46 Score=365.59 Aligned_cols=250 Identities=42% Similarity=0.729 Sum_probs=237.2
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
+.|.-.++||||++...++|.+.+..|+.+++.|.++|+.||+|+|+|||||||||++|++.|...+..|+.+-++.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
+|+|+..+.+|..|..|+..+|+||||||+|++..+|-.+....+....|.+-+||++|||+.+..+|-||++|||.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997665554556788889999999999999999999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
||||+|+||+|+.|+||.|+.+.|.+|++.+.+++.+..|+++++||+.|++|+|++..++|-+|.+.|+|+.
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------- 396 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------- 396 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcC
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~ 748 (807)
..+|+.+||.+++..++
T Consensus 397 ------------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 397 ------------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred ------------------cccccHHHHHHHHHHHH
Confidence 34799999999987664
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-44 Score=368.35 Aligned_cols=287 Identities=37% Similarity=0.620 Sum_probs=246.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhc-CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 555 (807)
.++|+||||++.+++.|++.+..|+.+|+.|...+ +.+++|||||||||||||+||+++|++.+++|+.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 68999999999999999999999999999997544 57899999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCC--cEEEeecCCCCCCC
Q 003623 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDII 633 (807)
Q Consensus 556 vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~--~v~vi~aTn~~~~l 633 (807)
+|++++.++.+|..|.+..||||||||+|+++..|+++ ..++...+.++|....||+..+. +|+|+||||||..|
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999432 35678899999999999997655 59999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHH--
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI-- 711 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~-- 711 (807)
|.|++| |+...++|+.|+.++|.+||+.++++..+..++|+.++|.+|+||||+||.++|+.|+...+++.+....
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999987640
Q ss_pred -HHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHHHhh
Q 003623 712 -ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDAD--IRKYQAFAQTLQQ 768 (807)
Q Consensus 712 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~--~~~y~~~~~~~~~ 768 (807)
..................-...+++++||..|...+.++++.+. ....+.|.+.+..
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00000000000000011122578999999999998888765553 3455667776643
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-44 Score=403.17 Aligned_cols=249 Identities=44% Similarity=0.780 Sum_probs=231.4
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcc
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 555 (807)
..+.|.|+.|++++|++|++.+.+ +++|+.|.++|...|+|+||+||||||||+||||+|++.+.||+.+++++++.++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999886 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcC-CCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 556 vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~-~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
+|.....++.+|..|+..+|||+|+||||.++..|+ ...+..+......+||||.+|||+.....|+|+|+||+|+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2223344566789999999999999999999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
+||+||||||+.|++++|+...|.+||+.|+++..+. +++|+..+|.+|.||+|+||.++|++|+..|.|+.
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~------- 537 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG------- 537 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999885 78899999999999999999999999999999976
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcCCC
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 750 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s 750 (807)
...|+..||+.|++.+...
T Consensus 538 ------------------~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 538 ------------------LREIGTKDLEYAIERVIAG 556 (774)
T ss_pred ------------------cCccchhhHHHHHHHHhcc
Confidence 2479999999999855444
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=387.72 Aligned_cols=253 Identities=44% Similarity=0.732 Sum_probs=235.5
Q ss_pred eccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh
Q 003623 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 552 (807)
.+.|.++|+||+|++.+++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC
Q 003623 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (807)
Q Consensus 553 ~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (807)
.+|+|++++.++.+|..|+...||||||||||.++..|.......+....+++.+||++||++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999999887543333334567889999999999988889999999999999
Q ss_pred CCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 003623 633 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~ 712 (807)
||||++||||||..|+|++|+.++|..||+.+++++++..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------ 370 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------ 370 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHhhhcCCccccccccccccccccHHHHHHHHhhcCCC
Q 003623 713 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS 750 (807)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s 750 (807)
...|+++||++|+..+...
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhc
Confidence 2379999999999987554
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-43 Score=342.72 Aligned_cols=245 Identities=39% Similarity=0.702 Sum_probs=220.8
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
.+++.++|++|+++.|+..+-.+.+ +++|+.|.+ ..|+++|||||||||||++|+++|++.+.||+.|+..++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 5678999999999999988766554 678887765 678999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
|+|+..+.|+++|++|++.+|||+||||+|+++-.|... +..+....++|.||++|||+..+.+|+.||+||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999887543 233456789999999999999999999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~-l~~~A~~~a~~~~~~~~~~~ 713 (807)
||+.+ ||...|.|.+|+.++|..|++.+++++|+.-+.++..+++.|.||||+||.. +++.|...|+.+.
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed------- 339 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED------- 339 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-------
Confidence 99998 9999999999999999999999999999999999999999999999999986 7777777777665
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcCCCCC
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS 752 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s 752 (807)
...|+.+|++.|+++.+++..
T Consensus 340 ------------------~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 340 ------------------REKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ------------------hhhhhHHHHHHHHHhhccccC
Confidence 236999999999998665443
No 25
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-42 Score=379.79 Aligned_cols=268 Identities=44% Similarity=0.743 Sum_probs=240.6
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
++++++.|+||||+++.+..|.+.|.+|+.||++|.+ |+.+..|||||||||||||.+|+++|.++...|+.|.|+++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 4688999999999999999999999999999999965 788899999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC--chhHHHHHHHHHHHHhhcccc--CCeEEEEEecCCCC
Q 003623 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPN 355 (807)
Q Consensus 280 ~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~v~~~Ll~~ld~~~~--~~~v~vI~atn~~~ 355 (807)
+.|+|++|+++|.+|+.|++..|||||+||+|.++|+|+.. ++.+.+|++.||+..||++.. ...|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999999754 567899999999999999984 56799999999999
Q ss_pred CCCHHHHccCCcceEEEeCCCC-hhHHHHHHHHHhcCCCCCCchhHHHHHHhhC-CCchhhHHHHHHHHHHHHHHhhccc
Q 003623 356 SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMDV 433 (807)
Q Consensus 356 ~ld~al~r~~Rf~~~i~i~~P~-~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~~ 433 (807)
-|||+|.||||||+-+++++++ .+.+..+|+..++++.+..++++.++|+.++ .|+|+|+-++|..|.+.++++..+.
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 5678899999999999999999999999985 6999999999999999999987664
Q ss_pred cccccchhhHHhhhccccchhHHhhhhccCCCCCc
Q 003623 434 IDLEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (807)
Q Consensus 434 ~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~ 468 (807)
+..............+.++++||.+++++..|+..
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 43221111122234678999999999999988754
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-42 Score=386.41 Aligned_cols=247 Identities=43% Similarity=0.796 Sum_probs=232.8
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
...++|.|+.|.+++|+++.+.+.+ ++.|..|..+|...|+|+||+||||||||+||+++|++.+.||+.++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4578999999999999999999875 889999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
|+|.....+|.+|.+|++++||||||||||++...|+.+.+.....-+..+||||.+|||+..+..|+||++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999976655544556679999999999999889999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~ 714 (807)
|||+||||||+.|.++.||...|.+|++.++++.++..++|+..+|+.|.||||+|+.+++++|+..|.++.
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 715 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...|++.||.+|...+
T Consensus 375 -----------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -----------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -----------------CeeEeccchHHHHHHH
Confidence 3479999999998754
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.8e-41 Score=375.88 Aligned_cols=258 Identities=49% Similarity=0.818 Sum_probs=238.2
Q ss_pred eeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccch
Q 003623 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l 551 (807)
..+.|.+.|++|+|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC
Q 003623 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (807)
.++|+|++++.++.+|+.|+...|+||||||||.++..|+...........+.+.++|.+++++....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988765433323445778889999999998888999999999999
Q ss_pred CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 003623 632 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (807)
Q Consensus 632 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~ 711 (807)
.+|++++||||||..|+||+|+.++|.+||+.++++.++..++++..+|+.++||||+||+++|++|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999999999999999999999999999999999999888999999999999999999999999999998863
Q ss_pred HHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHH
Q 003623 712 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 754 (807)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~ 754 (807)
...|+.+||.+|+..++++...+
T Consensus 357 --------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 --------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 23699999999999998865543
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-42 Score=363.75 Aligned_cols=278 Identities=38% Similarity=0.666 Sum_probs=239.1
Q ss_pred eccCCccccc--ccchhh-hhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe-EEEEec
Q 003623 473 VEVPNVNWED--IGGLEN-VKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKG 548 (807)
Q Consensus 473 ~~~~~~~~~~--i~g~~~-~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-~i~v~~ 548 (807)
+-.|+.+|++ |||++. .-...++++...+-.|+...++|+..-+|+|||||||||||.+|+.+...+++. --.|+|
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 3456777777 558764 344456666666778999999999999999999999999999999999999753 345799
Q ss_pred cchhhcccCCchHHHHHHHHHHHh--------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCc
Q 003623 549 PELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (807)
Q Consensus 549 ~~l~~~~vg~se~~i~~lf~~a~~--------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~ 620 (807)
++++++|||+||.++|.+|..|.. +...||+|||||+++.+||+..+ ..++++.|+||||.-|||++...+
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNN 369 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNN 369 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhc
Confidence 999999999999999999998854 34579999999999999998754 468999999999999999999999
Q ss_pred EEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC----CCCCcccHHHHHHHcccCChhhHHHHHH
Q 003623 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQ 696 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~~~~~~~~la~~~~g~sg~di~~l~~ 696 (807)
++||+.|||+|.||+||||||||...+++.+||+..|.+||+.+.+++ .+..|+|+.+||..|.+||||+|+.+++
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999776 4678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHH
Q 003623 697 RACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRS--VSDADIRKYQA 761 (807)
Q Consensus 697 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s--~s~~~~~~y~~ 761 (807)
.|...|+.+.+..... ........+...|++.||..||.+++|. +++++++.|..
T Consensus 450 sA~S~A~nR~vk~~~~----------~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK----------VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHHhhhccCcc----------eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 9999999998764311 1111223445689999999999999995 88999888763
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6e-41 Score=370.94 Aligned_cols=250 Identities=40% Similarity=0.716 Sum_probs=232.4
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
+.|..+|+||+|++..++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
+|+|++++.++.+|..|+...||||||||||.++..|............+.+.++|++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998875433333334567888999999999877889999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
|++++||||||+.|+|++||.++|.+||+.++.++.+..++++..++..++||||+||.++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcC
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~ 748 (807)
...|+.+||++|+.++.
T Consensus 409 ------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ------------------CCccCHHHHHHHHHHHH
Confidence 23699999999998863
No 30
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-40 Score=341.63 Aligned_cols=265 Identities=41% Similarity=0.658 Sum_probs=236.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.-+.+.|+||.|+.+.++-|.+++.+|+..|++|+.+ ..|-++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 3467999999999999999999999999999999875 467799999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCc-hhHHHHHHHHHHHHhhccccC----CeEEEEEecCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH-GEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPN 355 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~v~~~Ll~~ld~~~~~----~~v~vI~atn~~~ 355 (807)
+|.|++++.+|.+|+.|+.+.|++|||||||.|+.+++... .+..+|+...|+-+|||+... ..|+|+|+||-|+
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 99999999999999999999999999999999999987653 356789999999999998653 2488999999999
Q ss_pred CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccc
Q 003623 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 435 (807)
Q Consensus 356 ~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 435 (807)
+||.||+| ||...|++|+|+.+.|..+++..++..++.++++++.++..++||+|+||..+|++|++.++|+....+.
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999998765443
Q ss_pred cccchhhHHhhhccccchhHHhhhhccCCCCCc
Q 003623 436 LEDETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (807)
Q Consensus 436 ~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~ 468 (807)
-.+............++..||+.|+..++|+..
T Consensus 442 ~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 442 PREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 222222222222367999999999999988764
No 31
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=318.55 Aligned_cols=273 Identities=39% Similarity=0.692 Sum_probs=237.0
Q ss_pred cCCccEEeCCCcEEEecCCCcc---cc---ccccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEE
Q 003623 174 DPPEYCVVAPDTEIFCEGEPVR---RE---DENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247 (807)
Q Consensus 174 ~p~~~~~~~~~t~i~~~~~~~~---~~---~~~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL 247 (807)
.|.+.+-+..++.+.++.-|.. +. ..+.-+.-.|+||||++++++.|.+.+.+|+.|++-|+++|+.||+|+|+
T Consensus 131 kPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLm 210 (424)
T KOG0652|consen 131 KPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLM 210 (424)
T ss_pred CCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEe
Confidence 4666677777887766544421 11 11233556899999999999999999999999999999999999999999
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHH--
Q 003623 248 YGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVE-- 325 (807)
Q Consensus 248 ~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~-- 325 (807)
|||||||||.+||+.|...++.|+.+.+++++.-|.|+..+.+|..|..|....|+||||||+|++..++-.+...-+
T Consensus 211 YGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE 290 (424)
T KOG0652|consen 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE 290 (424)
T ss_pred eCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987754322222
Q ss_pred -HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHH
Q 003623 326 -RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIA 404 (807)
Q Consensus 326 -~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la 404 (807)
+|..-.|++.+||+.+...|-||++||+.+-+||+|.|.||+++.|+||.|+++.|.+|+++|.++|.+.+++++++++
T Consensus 291 VQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa 370 (424)
T KOG0652|consen 291 VQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA 370 (424)
T ss_pred HHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh
Confidence 3334457788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccC
Q 003623 405 KDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 405 ~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
+.|.+|.|+...++|.+|.+.++++.. ..++.+||..++..+
T Consensus 371 RsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heDfmegI~eV 412 (424)
T KOG0652|consen 371 RSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHEDFMEGILEV 412 (424)
T ss_pred hcccccCchhheeeehhhhHHHHhccc-----------------ccccHHHHHHHHHHH
Confidence 999999999999999999999998753 335677777665443
No 32
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=318.18 Aligned_cols=246 Identities=46% Similarity=0.743 Sum_probs=226.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.-+.++|.||||++-+++.|++.+++|+.|.++++.+|+.||+|||+|||||||||+|++++|+...+.|+.+.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchh---HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
+|.|+....++.+|..|+.+.|+|+||||+|+++.++-..... --+|++-.|++.|||+.+..+|-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999877543222 2256777888999999999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.||||+++.|+||+||..++.-++...+.+|.+.+++|++.+..+....+++++.++|++|.+.+.+..
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...+...||+++.+..
T Consensus 381 ----------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 ----------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------ceeeeHHHHHHHHHhh
Confidence 3446677888776654
No 33
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=357.34 Aligned_cols=279 Identities=38% Similarity=0.640 Sum_probs=249.6
Q ss_pred eeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccch
Q 003623 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l 551 (807)
....+++.|+|+.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++|+|.+++..|+.++++.|
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 334567999999999999999999999999999999874 4677899999999999999999999999999999999999
Q ss_pred hhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--CCCcEEEeecCCC
Q 003623 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNR 629 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~v~vi~aTn~ 629 (807)
.++|+|++|+.++.+|+-|+...|+|+|+||||+++..|.. ......+|+..++|.++++.. ..++|+||||||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 99999999999999999999999999999999999999943 335678899999999999975 4569999999999
Q ss_pred CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHH
Q 003623 630 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~ 708 (807)
||.+|.|++| ||.+.+|+|+|+.++|..+|+.++++.+. ..+.|+..|++.|+||||.||.++|++|++..++....
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 99999999999999999999999988743 35688999999999999999999999999988877533
Q ss_pred HHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 003623 709 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQ 768 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~~ 768 (807)
. ........+...+++..||+++++.++++++...++.|++|..+|+-
T Consensus 378 ~------------~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 378 T------------TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred c------------hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 2 01111234557789999999999999999999999999999999964
No 34
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=312.19 Aligned_cols=305 Identities=33% Similarity=0.560 Sum_probs=257.1
Q ss_pred hhhHHHHhHHHhhhcCcccccCcEEEEeecceeEEEEEEEecCCccEEeCCCcEEEecCCCccccccccCCCCCcccccC
Q 003623 133 GNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGG 212 (807)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~~~~~~~t~i~~~~~~~~~~~~~~~~~~~~~di~G 212 (807)
.+.|+.|-++.|.+ ..++.|+.+.-.+.-..+.|+|+++.|.+.+++++.|.+.... +.. ...+..++++++|+.|
T Consensus 50 ~~~F~~YArdQW~G--e~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~-~~~-~~~e~~~~it~ddViG 125 (368)
T COG1223 50 PEVFNIYARDQWLG--EVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLET-PRE-EDREIISDITLDDVIG 125 (368)
T ss_pred HHHHHHHHHHhhcc--eeeecCceEeecccccccceeEEEEeCCCCceecceEEEEecC-cch-hhhhhhccccHhhhhc
Confidence 35788899999974 4589999876555556678999999999988877666554432 211 1123457899999999
Q ss_pred hHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHH
Q 003623 213 VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRK 292 (807)
Q Consensus 213 ~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~ 292 (807)
+++.+.+++-++.+ +.+|+.|..+ .|++||+|||||||||++|+++|++.+.+++.+++.++++.++|+...+++.
T Consensus 126 qEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihe 201 (368)
T COG1223 126 QEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201 (368)
T ss_pred hHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHH
Confidence 99999999888776 8888888765 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEccchhhcCCcCCC-chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEE
Q 003623 293 AFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREI 371 (807)
Q Consensus 293 if~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i 371 (807)
+++.|....|||+||||+|+++-++.-. ....-..+++.|++.||++..+..|+.||+||+|+.+|+++|+ ||..+|
T Consensus 202 ly~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEI 279 (368)
T COG1223 202 LYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEI 279 (368)
T ss_pred HHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhee
Confidence 9999999999999999999998776432 1122256889999999999999999999999999999999999 999999
Q ss_pred EeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHH-HHHHHHHHHHHhhccccccccchhhHHhhhccc
Q 003623 372 DIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA-LCTEAALQCIREKMDVIDLEDETIDAEILNSMA 450 (807)
Q Consensus 372 ~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~-l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 450 (807)
+|.+|+.++|.+|++.+.+.++++-+.+++.++..|.|++|+|+.. +++.|..+++... .-.
T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed-----------------~e~ 342 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED-----------------REK 342 (368)
T ss_pred eeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-----------------hhh
Confidence 9999999999999999999999999999999999999999999964 4556666666542 234
Q ss_pred cchhHHhhhhccCC
Q 003623 451 VTDEHFKTALGTSN 464 (807)
Q Consensus 451 v~~~d~~~al~~~~ 464 (807)
++.+|++.|+.+..
T Consensus 343 v~~edie~al~k~r 356 (368)
T COG1223 343 VEREDIEKALKKER 356 (368)
T ss_pred hhHHHHHHHHHhhc
Confidence 67788888887643
No 35
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-39 Score=315.52 Aligned_cols=246 Identities=42% Similarity=0.777 Sum_probs=226.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
+.++-+|+-+||+++++++|++.+++|.+||++|+.+|+..|+|+|||||||+|||.||+++|....+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchh---HHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
+|.|+....++.+|-.|+.+.|+|+|.||||++...+....+. --+|..-.|++.+|++....++-||.+||+.+-+
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 9999999999999999999999999999999999877543322 2234445677888999999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.|+||+++.|+||+|+++.|.+||+.|.++|.+....++..+|....|.+|+++..+|.+|.+.+++.+
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...++++||+-|...+
T Consensus 373 ----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred ----------hccccHHHHHHHHHHH
Confidence 4668899998877654
No 36
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-40 Score=325.25 Aligned_cols=246 Identities=46% Similarity=0.779 Sum_probs=226.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
+.+.-+|.||||++.+++.|.+.+++|+.||++++.+|+.||+||+|||+||||||.||+++|+...+.|+.+-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHH---HHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~---~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
+|.|+....+|.+|+-|..+.|+|+||||||++..++....+.-++.+. -.|++.+|++..++.|-||.+||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 9999999999999999999999999999999999988765544344333 3567778899999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.||||+++.|+|+.||...+..|+.+|+.+|.+..+++++.+...-..++|+|+.++|.+|.+.++|..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------- 410 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------- 410 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
.+.++.+||.++.+.+
T Consensus 411 ----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------HhhccHHHHHHHHHHH
Confidence 4568889998876654
No 37
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-39 Score=341.81 Aligned_cols=227 Identities=44% Similarity=0.743 Sum_probs=217.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
..+++|+|+-|+++.+++|.|++++ ++.|+-|.+||-.-|+||||+||||||||+|||++|++.+.+|++..|+++-.-
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3578999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHH
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (807)
++|....++|.+|+.|+.+.||||||||||++..+|........+..++||+..|||+.+...|+|||+||.|+.+|+||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 99999999999999999999999999999999999877666677889999999999999999999999999999999999
Q ss_pred HccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHh
Q 003623 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 362 ~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
.||||||++|.+|.||...|.+||+.|+.++++..++|+.-||+-|.||+|+||++++..|++.+...
T Consensus 457 ~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 457 TRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred cCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999887654
No 38
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-40 Score=329.82 Aligned_cols=248 Identities=41% Similarity=0.718 Sum_probs=229.1
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
..+++|+.++|+-.+...+++.+..|+.++++|..+|+.+|++++||||||+|||.+|+++|..++.+|+.+..+++.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC
Q 003623 555 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 634 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld 634 (807)
|.|++.+.||+.|..|+...|||||+||||+++++|-+..........+.+-+||++|||+....+|-+|+|||+|+.||
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLd 285 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLD 285 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccc
Confidence 99999999999999999999999999999999999854433334456677788899999999999999999999999999
Q ss_pred ccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 635 PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 714 (807)
Q Consensus 635 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~ 714 (807)
|||+||||+|+.+.+|+|+...|..|++.+..........|.+.+.+..+||+|+|++++|++|.+.|+++.
T Consensus 286 paLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~-------- 357 (388)
T KOG0651|consen 286 PALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE-------- 357 (388)
T ss_pred hhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--------
Confidence 999999999999999999999999999999988888888999999999999999999999999999998875
Q ss_pred hhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 715 RRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...+-.++|..++++.
T Consensus 358 -----------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 -----------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred -----------------hHHHhHHHHHHHHHHH
Confidence 2257888998888765
No 39
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=369.09 Aligned_cols=387 Identities=38% Similarity=0.594 Sum_probs=304.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEechh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 277 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~~~ 277 (807)
..++|++|||++..+.++++++.+|+.||++|.++++.|++|||+|||||||||..|+++|..+. ..|+.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 35799999999999999999999999999999999999999999999999999999999998874 2355667889
Q ss_pred hhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
..++|+|+.+..++.+|++|+..+|+|+|+||||-++|.+......+...++..|+.+|+|+..++.|+||||||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 436 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 436 (807)
||+|||+|||++++++++|+.+.|.+|+..|+++..-. ...-+..+|..|.||.|+||.+||.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999876532 34457889999999999999999999999999987776554
Q ss_pred ccchhhHHhhhccccchhHHhhhhccCCCCCccceeeccCCcc--cccccchhhhhhhhhhcc-------------cccC
Q 003623 437 EDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVN--WEDIGGLENVKRELQETV-------------QYPV 501 (807)
Q Consensus 437 ~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~--~~~i~g~~~~k~~l~~~i-------------~~~~ 501 (807)
........ .....+...+|..|+....|+..|........+. ..-+.+.....+.++..+ .+.+
T Consensus 500 s~~kl~~d-~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLID-VALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred cccccccc-chhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 44332211 2334488899999999998887775332211111 000111111111111111 1100
Q ss_pred CChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-CCeEEEEeccchhhcc-cCCchHHHHHHHHHHHhCCCeEEE
Q 003623 502 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 579 (807)
Q Consensus 502 ~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-~~~~i~v~~~~l~~~~-vg~se~~i~~lf~~a~~~~p~ilf 579 (807)
...+..-...+--...+++.|..|.|-+.+..+|-+.+ +.+......+.++..- .+..+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000000111122348899999999999999998876 4555555555555443 456678899999999999999999
Q ss_pred Ecccchhhhhc
Q 003623 580 FDELDSIATQR 590 (807)
Q Consensus 580 iDEid~l~~~r 590 (807)
|-.+|.+....
T Consensus 659 ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 659 IPNVDEWARVI 669 (1080)
T ss_pred ccchhhhhhcC
Confidence 99999987643
No 40
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.9e-38 Score=363.98 Aligned_cols=249 Identities=43% Similarity=0.798 Sum_probs=228.4
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
+.+.++|+|++|++++|+.+.+.+.+ +.+++.|..+|..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 46789999999999999999998876 78899999999999999999999999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l 633 (807)
.|+|.+++.++.+|+.|+...||||||||||.+...|+...........+++++||.+||++.+..+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998876532222344578999999999999888899999999999999
Q ss_pred CccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~ 713 (807)
||+++||||||+.|++++|+.++|.+||+.++++.++..+.++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999988876643
Q ss_pred HhhhcCCccccccccccccccccHHHHHHHHhhcC
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR 748 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~ 748 (807)
...|+.+||+.|+..+.
T Consensus 280 ------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ------------------CCCCCHHHHHHHHHHHh
Confidence 23699999999999764
No 41
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=312.65 Aligned_cols=244 Identities=43% Similarity=0.767 Sum_probs=222.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
-+.++|+|+||..+++++|++.+++|+.||+-|-+||+.||+|||+|||||||||.+||++|+..++.|+.+-++++..+
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqk 250 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 250 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC----chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
|.|+....++.+|+.|+....||+|+||||++...+-.. .+++ +|..-.|.+.+|++..++++-|+.+||+|+.+
T Consensus 251 yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnev-qrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEV-QRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHH-HHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 999999999999999999999999999999998776432 2233 33444567788999999999999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
||+|.|+||+++.++|.+||.+.|..|+++|++.|.+..+..++-+|..+.+-+|+++..+|.+|.+.+++...
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr------ 403 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR------ 403 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...+..||..|..++
T Consensus 404 -----------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 -----------KVATEKDFLDAVNKV 418 (435)
T ss_pred -----------hhhhHHHHHHHHHHH
Confidence 234667777766544
No 42
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-38 Score=345.81 Aligned_cols=230 Identities=42% Similarity=0.723 Sum_probs=222.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|+||||+.++++.|.+.+.+|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..|+.|.|+++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHH
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 362 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~ 362 (807)
.|.+++++|.+|..|+...|||||+||+|.++|+|+.....+.+|+++||++.|||...-..|.|+|+|.+|+.|||||.
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999999889999999999999999999899999999999999999999
Q ss_pred ccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcc
Q 003623 363 RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 363 r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
||||+|+.++.+.|++.+|++||+.........+++|++.+|..|.||+|+|+..++..|.+.+..+...
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998888776543
No 43
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.8e-38 Score=351.89 Aligned_cols=251 Identities=43% Similarity=0.769 Sum_probs=213.9
Q ss_pred eccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC----------e
Q 003623 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------N 542 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~----------~ 542 (807)
.+.|+++|++|+|++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++. .
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 456889999999999999999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCC
Q 003623 543 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 618 (807)
Q Consensus 543 ~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~ 618 (807)
|+.+++++++++|+|++++.++.+|+.|+.. .||||||||+|.++..|+... .+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788999999999999999999999998764 699999999999998886432 2334578899999999999888
Q ss_pred CcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhcc-CCCC---------CcccHHHHHHH------
Q 003623 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-SPVS---------KDVDLRALAKY------ 682 (807)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~---------~~~~~~~la~~------ 682 (807)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 3441 11122222221
Q ss_pred -----------------------cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHH
Q 003623 683 -----------------------TQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVH 739 (807)
Q Consensus 683 -----------------------~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 739 (807)
++.+||++|+++|.+|...|+.+.+... ...++.+|
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~---------------------~~~~~~~~ 470 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG---------------------QVGLRIEH 470 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC---------------------CcCcCHHH
Confidence 4568899999999999988888876321 23688999
Q ss_pred HHHHHhh
Q 003623 740 FEESMKY 746 (807)
Q Consensus 740 f~~al~~ 746 (807)
+..|+..
T Consensus 471 l~~a~~~ 477 (512)
T TIGR03689 471 LLAAVLD 477 (512)
T ss_pred HHHHHHH
Confidence 9998864
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.5e-38 Score=345.22 Aligned_cols=250 Identities=51% Similarity=0.840 Sum_probs=230.3
Q ss_pred eccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh
Q 003623 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~ 552 (807)
.+.|.+.|++++|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC
Q 003623 553 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 632 (807)
Q Consensus 553 ~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 632 (807)
.+|+|+....++.+|+.++...|+||||||+|.+...|.....+.+....+.+.++|.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999998877543333333456788999999999877788999999999999
Q ss_pred CCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 003623 633 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 712 (807)
Q Consensus 633 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~ 712 (807)
+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------ 347 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------ 347 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999998864
Q ss_pred HHhhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 713 RERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...|+.+||.+|+..+
T Consensus 348 -------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -------------------CCccCHHHHHHHHHHh
Confidence 2369999999999875
No 45
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.5e-37 Score=355.46 Aligned_cols=246 Identities=43% Similarity=0.780 Sum_probs=226.4
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcc
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 555 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~ 555 (807)
..++|+|++|++++++.+.+.+.+ +..++.|..++...++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 467899999999999999998765 7888889999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCc
Q 003623 556 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 556 vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 635 (807)
+|.....++.+|+.|+...||||||||||.++..|+...+........++++||.+||++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888654434445567899999999999988889999999999999999
Q ss_pred cccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003623 636 ALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 715 (807)
Q Consensus 636 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~ 715 (807)
|++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999998887654
Q ss_pred hhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 716 RRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
...|+.+||++|+..+
T Consensus 408 ----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999876
No 46
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=327.37 Aligned_cols=246 Identities=43% Similarity=0.729 Sum_probs=224.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+.++|+||||++.+++.|++.+.+|+.+|++|+.+|+.+++++||+||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCc---hhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
++.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+++..++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987764322 223356778888899988887889999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..|+||+|+|+..+|++|++.++++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...++.+||..|+..+
T Consensus 371 ----------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTV 386 (398)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2357888999888765
No 47
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-36 Score=300.29 Aligned_cols=227 Identities=39% Similarity=0.699 Sum_probs=210.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
-+++.|+|+.|++..++.|.+.+.+|+++|++|.. +-.|-++||||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 47899999999999999999999999999999974 34567899999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcccc-CCeEEEEEecCCCCCCCHH
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 360 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~-~~~v~vI~atn~~~~ld~a 360 (807)
|.|++++.++.+|+.|+.+.|+||||||||.+|..++...++..+|+...++-+|.|... ...|+|+|+||-|+.+|.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999988888899999999999998764 4579999999999999999
Q ss_pred HHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhc
Q 003623 361 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 361 l~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
+|| ||++.|+||+|+...|..+++.|+...+.. .+.|+..++..|+||+|+|+..+++.+.++.+|+..
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 999 999999999999999999999998776533 466899999999999999999999999988877643
No 48
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=308.00 Aligned_cols=228 Identities=46% Similarity=0.758 Sum_probs=213.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
-.++|+||||+++.++++++.+.+|+++|++|..-+ +.+++|||||||||||||++|+++|++.++.|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 357899999999999999999999999999996433 4789999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCe--EEEEEecCCCCCCCH
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 359 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~--v~vI~atn~~~~ld~ 359 (807)
+.|+.++.++.+|-.|..-+|+||||||+|+++..|+....+....+.+++..+-||+....+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999998766677788888999999999987654 999999999999999
Q ss_pred HHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcc
Q 003623 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 360 al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
|+.| |+.+.+++++|+..+|.+||+..+++-.+.+++|+..+|..|.||+|.||..+|+.|++..++..+.
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999988877554
No 49
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=335.50 Aligned_cols=228 Identities=46% Similarity=0.800 Sum_probs=214.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|.|+.|+++.+..|.|++.. |++|+.|.++|...|+|+||+||||||||.||+++|++.+.+|+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 358999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcC---C-CchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (807)
.|....+++.+|+.++...|||+||||||++...++ . ..+.-....++||+..||++.....|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 998899999999999999999999999999998884 2 233445667899999999999998999999999999999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhc
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
++|+||||||+.|.++.|+..+|.+|++.|.+...+. +++++..+|..|+||+|+||..+|.+|++.+.++..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999998885 788999999999999999999999999999988754
No 50
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.2e-35 Score=345.88 Aligned_cols=247 Identities=40% Similarity=0.780 Sum_probs=225.7
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
...|+++.|++..++.+.+.+.+ +..+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 46799999999999999998876 45677788888888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCcc
Q 003623 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 636 (807)
Q Consensus 557 g~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~a 636 (807)
|.++..++.+|+.|+...||||||||||.++..|+...+.......+++++||.+||++....+++||+|||+|+.||+|
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999999886543333345678999999999999988899999999999999999
Q ss_pred ccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003623 637 LLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 716 (807)
Q Consensus 637 llrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~ 716 (807)
++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---------- 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---------- 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hcCCccccccccccccccccHHHHHHHHhhcCC
Q 003623 717 RSENPEAMEEDVEDEVAEIKAVHFEESMKYARR 749 (807)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~ 749 (807)
...|+.+||++|+..+..
T Consensus 377 ---------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ---------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---------------CCcccHHHHHHHHHHHhc
Confidence 236999999999986644
No 51
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-36 Score=347.35 Aligned_cols=267 Identities=37% Similarity=0.675 Sum_probs=228.4
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEecc
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGP 549 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~ 549 (807)
...+.|+++||+++++.+|++++..|+.+|+.|..+++.|++|+||+||||||||+.|+++|..+ +..|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 34689999999999999999999999999999999999999999999999999999999999987 3457777999
Q ss_pred chhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC
Q 003623 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (807)
+.+++|+|+.|+.++.+|+.|+...|+||||||||-|++.|+.. .......++++||..|||+.....|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 99999999999999999999999999999999999999998653 234567899999999999999999999999999
Q ss_pred CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHH
Q 003623 630 PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 630 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~ 708 (807)
|+.+|||+.||||||+.+|||+|+.+.|.+|+..+.++-. .....-+..||+.+.||-|+||+++|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 9999999999999999999999999999999999987764 222344779999999999999999999999999988632
Q ss_pred HHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCH
Q 003623 709 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 753 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~ 753 (807)
..- ....... .......|+..||..|+....|+...
T Consensus 496 q~y--------~s~~kl~-~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 496 QIY--------SSSDKLL-IDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eee--------ccccccc-ccchhhhhhhHhhhhhhhccCCCCCc
Confidence 110 0000000 01122348888999998877766544
No 52
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2e-35 Score=355.52 Aligned_cols=198 Identities=21% Similarity=0.352 Sum_probs=170.1
Q ss_pred cCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcc----------cC------------
Q 003623 500 PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG------------ 557 (807)
Q Consensus 500 ~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~----------vg------------ 557 (807)
|........++|+.+++|+||+||||||||+||||+|++++.||+.|++++++.+| +|
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566788999999999999999999999999999999999999999998765 22
Q ss_pred -------------------CchH--HHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC
Q 003623 558 -------------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 558 -------------------~se~--~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
+++. .++.+|+.|++.+||||||||||+++... .....+++||++|||..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~ 1765 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDC 1765 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccc
Confidence 2233 38999999999999999999999997641 11124899999999874
Q ss_pred ---CCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHh--ccCCCCCc-ccHHHHHHHcccCChhh
Q 003623 617 ---AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL--RKSPVSKD-VDLRALAKYTQGFSGAD 690 (807)
Q Consensus 617 ---~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~-~~~~~la~~~~g~sg~d 690 (807)
...+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++...+ ++.++..+ +|+..+|+.|.||||||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 4568999999999999999999999999999999999999999998654 45555543 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 003623 691 ITEICQRACKYAIREN 706 (807)
Q Consensus 691 i~~l~~~A~~~a~~~~ 706 (807)
|.++|++|++.|+++.
T Consensus 1846 LanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1846 LVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999875
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.7e-34 Score=344.22 Aligned_cols=266 Identities=50% Similarity=0.846 Sum_probs=236.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
+.++|+||+|++..++.|++.+.+|+.++++++++++.+++++|||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC-chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHH
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (807)
.|+++..++.+|+.++...|+||||||+|.+++.++.. .....++++++|+..|+++....+++||+|||+|+.+|+++
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~al 607 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPAL 607 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhh
Confidence 99999999999999999999999999999999887643 23467889999999999998888999999999999999999
Q ss_pred HccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcccccccc-ch
Q 003623 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-ET 440 (807)
Q Consensus 362 ~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~~ 440 (807)
.|+|||++.++++.|+.++|.+||+.+.+++++..++++..+|..|+||+|+|+..+|++|++.++++......... ..
T Consensus 608 lRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~ 687 (733)
T TIGR01243 608 LRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV 687 (733)
T ss_pred cCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998887543211000 00
Q ss_pred hhHHhhhccccchhHHhhhhccCCCCCc
Q 003623 441 IDAEILNSMAVTDEHFKTALGTSNPSAL 468 (807)
Q Consensus 441 i~~~~~~~~~v~~~d~~~al~~~~ps~~ 468 (807)
...+......++.+||..++..++|+..
T Consensus 688 ~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 688 GEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred ccccccccCcccHHHHHHHHHHcCCCCC
Confidence 0001122457899999999999888743
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.5e-34 Score=316.17 Aligned_cols=250 Identities=50% Similarity=0.827 Sum_probs=225.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
.+.+.|+||+|++++++.|++.+.+|+.+|+.|+.+|+.++++||||||||||||++|+++|.+++.+++.++++++...
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCch---hHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (807)
+.|+.+..++.+|+.+....|++|||||+|.++..+..... ....+.+.+++..++++....++.||+|||+++.+|
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999877653321 122445667777888887778899999999999999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcccccccc
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (807)
+++.|+|||++.|++++|+.++|.+||+.+++++.+..+.++..++..|+||+|+|+..+|++|++.++++.
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~-------- 356 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD-------- 356 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999999998888999999999999999999999999999888753
Q ss_pred chhhHHhhhccccchhHHhhhhccCCCCCc
Q 003623 439 ETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (807)
Q Consensus 439 ~~i~~~~~~~~~v~~~d~~~al~~~~ps~~ 468 (807)
...++.+||..|+..+.++..
T Consensus 357 ---------~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 357 ---------RTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred ---------CCCcCHHHHHHHHHHHhcccc
Confidence 234788999999988876543
No 55
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.9e-34 Score=315.34 Aligned_cols=246 Identities=48% Similarity=0.787 Sum_probs=222.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+..+|+||||++++++.|++++.+|+.+|++|+.+|+.+++++|||||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCch---hHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
++.|+.+..++.+|+.+....|+|+||||+|.++.++..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 999999999999999999999999999999999977643221 12234556778888888777889999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|+|||++.|+++.|+.++|.+||+.++.++.+..++++..++..+.||+|+|+..+|.+|++.++++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999889999999999999999999999999999988764
Q ss_pred cchhhHHhhhccccchhHHhhhhccC
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...++.+||..|+..+
T Consensus 409 ----------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ----------CCccCHHHHHHHHHHH
Confidence 2347888888887765
No 56
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-34 Score=326.89 Aligned_cols=249 Identities=51% Similarity=0.839 Sum_probs=232.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
.+.++|.|+||++..+..+++.+.+|+.+++.|...++.+++++|||||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHH
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (807)
|.|+++++++.+|+.|+...||||||||+|.+++.++...+....+++.+|+.+++++....+|+||++||+|+.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987766666899999999999999999999999999999999999
Q ss_pred HccCCcceEEEeCCCChhHHHHHHHHHhcCCC--CCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccc
Q 003623 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (807)
Q Consensus 362 ~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (807)
.|+|||+..+++++|+..+|.+|++.+++... +..++++..++..|.||+|+|+..+|++|.+.+++...
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 99999999999999999999999999998554 45789999999999999999999999999998887642
Q ss_pred hhhHHhhhccccchhHHhhhhccCCCC
Q 003623 440 TIDAEILNSMAVTDEHFKTALGTSNPS 466 (807)
Q Consensus 440 ~i~~~~~~~~~v~~~d~~~al~~~~ps 466 (807)
...++..||..+++...|+
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCC
Confidence 3457889999999988776
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.1e-32 Score=326.73 Aligned_cols=435 Identities=23% Similarity=0.355 Sum_probs=301.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (807)
-.++++.|.++++.++.+.+.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3567899999999988777644 234589999999999999999999987 67788888
Q ss_pred chhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 275 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 275 ~~~l~--~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
...+. .++.|+.+.+++.+|+.+....++||||||+|.+.+.+....+..+ +.+.|...+ .++.+.+||+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEecC
Confidence 88876 4788999999999999998878999999999999876543322211 222333333 357899999998
Q ss_pred CCC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC----C-CCchhHHHHHHhhCCCchhh-----HHH
Q 003623 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVGAD-----LAA 417 (807)
Q Consensus 353 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~d-----l~~ 417 (807)
..+ ..|+++.| ||. .|+++.|+.+++.+||+.....+. + ..+..+..++..++.|.+.. ...
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 643 57999999 996 699999999999999996654321 1 23455778888888776542 234
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccCCCCCccceeeccCCcccc--------------cc
Q 003623 418 LCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWE--------------DI 483 (807)
Q Consensus 418 l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~~~~~~~--------------~i 483 (807)
++.+++....-.. .......++.+|+..++..... +....+.|+ .|
T Consensus 397 lld~a~a~~~~~~-------------~~~~~~~v~~~~i~~~i~~~tg-------iP~~~~~~~~~~~l~~l~~~l~~~v 456 (731)
T TIGR02639 397 VIDEAGASFRLRP-------------KAKKKANVSVKDIENVVAKMAH-------IPVKTVSVDDREKLKNLEKNLKAKI 456 (731)
T ss_pred HHHHhhhhhhcCc-------------ccccccccCHHHHHHHHHHHhC-------CChhhhhhHHHHHHHHHHHHHhcce
Confidence 4555432111000 0001234667777776655421 011122333 35
Q ss_pred cchhhhhhhhhhcccccCCChhhhhhhcCC----CCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh------
Q 003623 484 GGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT------ 553 (807)
Q Consensus 484 ~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~------ 553 (807)
.|++++++.+...+.. .+.|+. |...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 457 ~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSR 528 (731)
T ss_pred eCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHH
Confidence 5555555555544432 122332 3334899999999999999999999999999999988643
Q ss_pred ------cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CC
Q 003623 554 ------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AK 618 (807)
Q Consensus 554 ------~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~ 618 (807)
.|+|.. ..+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... +.
T Consensus 529 lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEieka~--------------~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 529 LIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEIEKAH--------------PDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred HhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEechhhcC--------------HHHHHHHHHhhccCeeecCCCcccCC
Confidence 233322 23345566677788999999999863 347888999988631 23
Q ss_pred CcEEEeecCCCCC-------------------------CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC-----
Q 003623 619 KTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----- 668 (807)
Q Consensus 619 ~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----- 668 (807)
.+.+||+|||... .+.|.++. |||.+|.|.+++.++..+|++..+++.
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~ 670 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN 670 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5688999998731 25667775 999999999999999999999887531
Q ss_pred --CCC---CcccHHHHHHH--cccCChhhHHHHHHHHHHHHHHHHH
Q 003623 669 --PVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 669 --~~~---~~~~~~~la~~--~~g~sg~di~~l~~~A~~~a~~~~~ 707 (807)
++. ++.-++.|++. ...|..+.|+.+++.....++.+.+
T Consensus 671 ~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 671 EKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred hCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 122 22234566664 2345568888888888777776654
No 58
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.1e-33 Score=293.42 Aligned_cols=218 Identities=19% Similarity=0.254 Sum_probs=170.4
Q ss_pred ccccc-cchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccC
Q 003623 479 NWEDI-GGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 557 (807)
Q Consensus 479 ~~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg 557 (807)
+|+++ +|+.-.+..+...+....+ ..+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 5555444444433322111 12233578999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHh-----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHH-HHHHHHHcCC------------CCCC
Q 003623 558 ESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAKK 619 (807)
Q Consensus 558 ~se~~i~~lf~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~-~~lL~~ld~~------------~~~~ 619 (807)
++|+.+|++|+.|+. .+||||||||||++++.|+.. ......+++ .+||+.||+. ....
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999975 469999999999999998632 223445555 8999999874 2356
Q ss_pred cEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHccc----CChhhHHHHH
Q 003623 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG----FSGADITEIC 695 (807)
Q Consensus 620 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g----~sg~di~~l~ 695 (807)
+|+||+|||+|+.|||+|+||||||+.+ +.|+.++|.+||+.++++..+. ..|+..|+..+.| |+||--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999864 5899999999999999998776 5778888877654 5565555555
Q ss_pred HHHHHHHHH
Q 003623 696 QRACKYAIR 704 (807)
Q Consensus 696 ~~A~~~a~~ 704 (807)
.++...-+.
T Consensus 345 d~~v~~~i~ 353 (413)
T PLN00020 345 DDEVRKWIA 353 (413)
T ss_pred HHHHHHHHH
Confidence 554444333
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-31 Score=314.44 Aligned_cols=447 Identities=22% Similarity=0.314 Sum_probs=296.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (807)
.++.+.|.++++.++.+++.. ....++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 456799999999998887754 224578999999999999999999764 445556555
Q ss_pred hhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 276 ~~l~--~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
..+. ..+.|+.+.+++.+|..+....++||||||+|.++..+....+.. .+ .+++..+..++.+.+||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~--d~----~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV--DA----ANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH--HH----HHHHHHHHhCCCeEEEecCCh
Confidence 5554 467889999999999999888889999999999987764322221 12 223333345678999999997
Q ss_pred CC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCch-----hHHHHHHhhCCCc-----hhhHHHH
Q 003623 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV-----DLERIAKDTHGYV-----GADLAAL 418 (807)
Q Consensus 354 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~-----~l~~la~~t~g~~-----~~dl~~l 418 (807)
++ ..|++|.| ||. .|.++.|+.+++..||+.+..++....++ .+...+..+..|. +.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 57999998 995 79999999999999999877665544333 3444444455543 3355667
Q ss_pred HHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccCC--CCC-ccc----eeeccCCcccccccchhhhhh
Q 003623 419 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSN--PSA-LRE----TVVEVPNVNWEDIGGLENVKR 491 (807)
Q Consensus 419 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~--ps~-~~~----~~~~~~~~~~~~i~g~~~~k~ 491 (807)
+.+|+...-- ... . .....++..|+...+.... |.. +.. ........--..|.|++++++
T Consensus 402 ldea~a~~~~--~~~---~--------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARL--MPV---S--------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhcc--Ccc---c--------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 7777643210 000 0 0011244455554443321 110 000 000000111234788998888
Q ss_pred hhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh-----cccCCchH-----
Q 003623 492 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----MWFGESEA----- 561 (807)
Q Consensus 492 ~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-----~~vg~se~----- 561 (807)
.+.+.+....... .. .-+|..++||+||||||||++|+++|..++.+|+.++++++.. +++|....
T Consensus 469 ~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 8887765321100 00 1123446999999999999999999999999999999887642 33332211
Q ss_pred HHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCC--
Q 003623 562 NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-- 630 (807)
Q Consensus 562 ~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~-- 630 (807)
.-+.+.+..+..+.+|+||||||.+. ..+.+.||+.||... ..++++||+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka~--------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKAH--------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhhh--------------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 11234455566677999999999973 347899999998431 12578999999932
Q ss_pred -----------------------CCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhcc-------CCCCCcc---cHH
Q 003623 631 -----------------------DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-------SPVSKDV---DLR 677 (807)
Q Consensus 631 -----------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~---~~~ 677 (807)
..+.|.++. |+|.+|.|++++.++..+|+..++.+ .++.-.. -++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 135677776 99999999999999999999877642 2333222 245
Q ss_pred HHHHHc--ccCChhhHHHHHHHHHHHHHHHHH
Q 003623 678 ALAKYT--QGFSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 678 ~la~~~--~g~sg~di~~l~~~A~~~a~~~~~ 707 (807)
.|++.. ..|-.+.|+.+++.-...++.+.+
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 566543 234467888888888777777654
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-33 Score=311.07 Aligned_cols=229 Identities=47% Similarity=0.794 Sum_probs=215.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|.|+.|.++.++.+.++++. ++.|.-|..+|...|+||||+||||||||+||+++|++.+.+|+.+++++++.-+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 467999999999999999999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC---chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCH
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (807)
+|....++|.+|.++++++|||+||||||++..+++.. ..+.....++||+..||++.....|+++++||+|+-+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999988643 223445688999999999998889999999999999999
Q ss_pred HHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcc
Q 003623 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 432 (807)
Q Consensus 360 al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 432 (807)
||.|+|||++.|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+..++.+|++.+.++...
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887543
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-31 Score=299.91 Aligned_cols=242 Identities=25% Similarity=0.412 Sum_probs=210.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
...+|+||||++..++.+++.... ++.....+|+.+++|||||||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 456899999999999888765432 23445678999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCC-CchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHH
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (807)
.|+++.+++.+|+.+....||||||||||.++.++.. ..+....+++.+++.+|+. ...+|+||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 3345667888999999875 345799999999999999999
Q ss_pred HccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC--CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccc
Q 003623 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (807)
Q Consensus 362 ~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~--~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (807)
.|+|||++.++++.|+.++|.+||+.++++.... .+.++..++..|+||+|+||..+|.+|...+....
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 9999999999999999999999999999876432 47789999999999999999999999988776431
Q ss_pred hhhHHhhhccccchhHHhhhhccCCCCC
Q 003623 440 TIDAEILNSMAVTDEHFKTALGTSNPSA 467 (807)
Q Consensus 440 ~i~~~~~~~~~v~~~d~~~al~~~~ps~ 467 (807)
..++.+||..++..+.|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2368899999999998865
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=3.5e-31 Score=292.83 Aligned_cols=245 Identities=53% Similarity=0.867 Sum_probs=218.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
..+.+.|+||+|+++++++|++++.+|+.+|+.+..+|+.+++++||+||||||||++|+++|+.++.+++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCc---hhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
.+.|+....++.+|+.+....|++|||||+|.+...+.... +....+.+.+++..++++....++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999889999999999999999999999999987654322 112234556677777877767789999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
|+++.|++||++.++++.|+.++|.+|++.++..+.+..+.++..++..++||+|+|+..+|++|++.++++.
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~------- 347 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE------- 347 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Confidence 9999999999999999999999999999999999888888899999999999999999999999999988753
Q ss_pred cchhhHHhhhccccchhHHhhhhcc
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGT 462 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~ 462 (807)
...++.+||..|+..
T Consensus 348 ----------~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEK 362 (364)
T ss_pred ----------CCccCHHHHHHHHHH
Confidence 234778888887754
No 63
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.9e-32 Score=276.25 Aligned_cols=229 Identities=44% Similarity=0.762 Sum_probs=208.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
...+++|++++|+-.++..+++.+++|+..|++|..+|+.+|++++||||||+|||.+|+++|..++..|+.+..+.+.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH---HHHhhccccCCeEEEEEecCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL---LTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L---l~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
++.|++...||+.|..|....||+||+||||++...+.......++.+...| ++.|+++....+|-+|.|||+|+.+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 9999999999999999999999999999999999877443333344455554 4556667777889999999999999
Q ss_pred CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHh
Q 003623 358 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 358 d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
+|+|.|+||+++.+++|.|++..|..|++.|...+......+.+++.+.++||.|+|+...|.++.+.+++.
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999999999888888888999999999999999999999998766544
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.6e-31 Score=302.96 Aligned_cols=244 Identities=45% Similarity=0.756 Sum_probs=219.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 281 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~ 281 (807)
.+.++|+|++|+++.++++++++.. +++++.+.++|..+++++||+||||||||++++++|++++.+++.++++++.+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 3578999999999999999999887 899999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC---chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 003623 282 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 282 ~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (807)
+.|.....++.+|+.+....|+||||||+|.++.+++.. ......+++++|+..|+++....+++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999877542 12334577889999999998888999999999999999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhcccccccc
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 438 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 438 (807)
++++|++||++.++++.|+.++|.+||+.++++..+..+.++..++..+.||+++|+..+|++|+..+.++.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-------- 279 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-------- 279 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 999999999999999999999999999999998887778899999999999999999999999988766542
Q ss_pred chhhHHhhhccccchhHHhhhhccC
Q 003623 439 ETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 439 ~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
...++.+++..++...
T Consensus 280 ---------~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRV 295 (495)
T ss_pred ---------CCCCCHHHHHHHHHHH
Confidence 2246778888887765
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.1e-30 Score=292.60 Aligned_cols=221 Identities=43% Similarity=0.715 Sum_probs=195.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------E
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 270 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------~ 270 (807)
..+.++|+||||+++++++|++.+.+|+.+|++|+.+|+.+++++|||||||||||++++++|++++.. |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 456789999999999999999999999999999999999999999999999999999999999998643 5
Q ss_pred EEEechhhhhhhhchhHHHHHHHHHHHHhc----CCeEEEEccchhhcCCcCCC-chhHHHHHHHHHHHHhhccccCCeE
Q 003623 271 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 345 (807)
Q Consensus 271 i~v~~~~l~~~~~g~~~~~i~~if~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (807)
+.+.++++.+++.|+++..++.+|+.+... .|+|+||||+|.++..++.. .++.+.+++.+|+++|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 667788899999999999999999988763 69999999999999887643 3456788899999999999888899
Q ss_pred EEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC-CCCCCchhHHHHHHhhCCCchhhHHHHHHHHHH
Q 003623 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 424 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 424 (807)
+||+|||+++.|||++.|+|||+..|+++.|+.++|.+||+.++.. +++ + ..+..+.|++++++..+|+++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754 333 2 22355799999999999998865
Q ss_pred HHH
Q 003623 425 QCI 427 (807)
Q Consensus 425 ~~~ 427 (807)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 544
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.4e-30 Score=296.74 Aligned_cols=243 Identities=43% Similarity=0.735 Sum_probs=216.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 282 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~ 282 (807)
..++|+|++|+++.++.+.+++.. +++++.|..+|...++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457999999999999999999877 8889999999999999999999999999999999999999999999999998888
Q ss_pred hchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC---chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCH
Q 003623 283 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 359 (807)
Q Consensus 283 ~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~ 359 (807)
.|.....++.+|+.+....||||||||+|.++..++.. .......++.+|+..++++....+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888899999999999999999999999998776432 223345678889999999888889999999999999999
Q ss_pred HHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccc
Q 003623 360 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 439 (807)
Q Consensus 360 al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 439 (807)
++.|+|||++.+.++.|+.++|.+||+.++++..+..+.++..++..|.||+++||..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777888999999999999999999999999887765432
Q ss_pred hhhHHhhhccccchhHHhhhhccC
Q 003623 440 TIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 440 ~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
..++.+++..|+..+
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 236677787777654
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=272.01 Aligned_cols=261 Identities=42% Similarity=0.655 Sum_probs=221.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
...++.|+|++|++..++.+.+++.+|+..|.+|..+ -.+.+++||.||||+|||+|+++||.+.++.|+.+.++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 4567899999999999999999999999999999865 367789999999999999999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--cCCeEEEEEecCCCCCCC
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSID 358 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~~~~v~vI~atn~~~~ld 358 (807)
+|.|+.+..++.+|+-|+..+|+|+||||+|.++.++.....+..+++..+++-.+++.. ...+|+||||||.|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999999866666667777777766666543 345899999999999999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC-CCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccc
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 437 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 437 (807)
.+++| ||...++++.|+.+.|..+|+..+...+ ...+.++..+++.|+||++.|+.++|++|++..++.......+
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~- 381 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL- 381 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh-
Confidence 99999 9999999999999999999998877663 3356789999999999999999999999998666554331000
Q ss_pred cchhhHHhhhccccchhHHhhhhccCCCCCc
Q 003623 438 DETIDAEILNSMAVTDEHFKTALGTSNPSAL 468 (807)
Q Consensus 438 ~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~ 468 (807)
..+. ......++..||..++..+.|+..
T Consensus 382 -~~~~--~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 382 -EFID--ADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred -hhcc--hhccCCCCcchHHHHHHhhccccC
Confidence 0111 123455777888888888877643
No 68
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=8.5e-28 Score=288.51 Aligned_cols=454 Identities=20% Similarity=0.287 Sum_probs=282.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEE
Q 003623 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCI 273 (807)
Q Consensus 204 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v 273 (807)
+-.++++.|.++++.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34677899999987777666543 2245799999999999999999998862 445666
Q ss_pred echhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEe
Q 003623 274 NGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (807)
Q Consensus 274 ~~~~l~--~~~~g~~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (807)
+...+. ..+.|+.+.+++.+|+.+.. ..++||||||+|.+...++.... . ...+ ++.....++.+.+|||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~--d~~n----~Lkp~l~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-G--DAAN----LLKPALARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-c--cHHH----HhhHHhhCCCeEEEEe
Confidence 665554 36789999999999999865 46789999999999876543211 1 1112 2333345678999999
Q ss_pred cCCCC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-----CCchhHHHHHHhhCCCchh-----hH
Q 003623 351 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-----SDDVDLERIAKDTHGYVGA-----DL 415 (807)
Q Consensus 351 tn~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-----~~~~~l~~la~~t~g~~~~-----dl 415 (807)
|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+.. ..+..+..++..+++|... ..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 98643 58999999 99 57999999999999998766654332 1345678888888887642 22
Q ss_pred HHHHHHHHHHH-HHhhccc-------------------ccc------ccc-h---hhHH------hhh------------
Q 003623 416 AALCTEAALQC-IREKMDV-------------------IDL------EDE-T---IDAE------ILN------------ 447 (807)
Q Consensus 416 ~~l~~~a~~~~-~~~~~~~-------------------~~~------~~~-~---i~~~------~~~------------ 447 (807)
..++.+|+... +...... ... ... . ...+ ...
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443211 1100000 000 000 0 0000 000
Q ss_pred ----------------------------------------------ccccchhHHhhhhccCC--CCC-ccc----eeec
Q 003623 448 ----------------------------------------------SMAVTDEHFKTALGTSN--PSA-LRE----TVVE 474 (807)
Q Consensus 448 ----------------------------------------------~~~v~~~d~~~al~~~~--ps~-~~~----~~~~ 474 (807)
...++..++...+.... |.. +.. ....
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~ 559 (852)
T TIGR03345 480 VEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLS 559 (852)
T ss_pred HHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHH
Confidence 00011111111111100 000 000 0000
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcC---CCCc-ceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEe
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM---SPSK-GVLFYGPPGCGKTLLAKAIANEC---QANFISVK 547 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~-giLL~GppGtGKT~la~alA~~~---~~~~i~v~ 547 (807)
....--..+.|++.+.+.+.+.+... ..|+ ..|. .+||+||||||||.+|+++|..+ ...++.++
T Consensus 560 l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 560 LPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred HHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 00000123556666666665554321 1122 1233 38999999999999999999998 45789999
Q ss_pred ccchhh------------cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC
Q 003623 548 GPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (807)
Q Consensus 548 ~~~l~~------------~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~ 615 (807)
++++.. .|+|..+. +.+.+..++.+.+||+||||+... ..+.+.|++.||..
T Consensus 632 mse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~--------------~~v~~~Llq~ld~g 695 (852)
T TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH--------------PDVLELFYQVFDKG 695 (852)
T ss_pred HHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC--------------HHHHHHHHHHhhcc
Confidence 887642 25554332 234566677888999999998642 45778888888753
Q ss_pred C---------CCCcEEEeecCCCCC-----------------------------CCCccccCCCCCcceeecCCCCHHHH
Q 003623 616 S---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEESR 657 (807)
Q Consensus 616 ~---------~~~~v~vi~aTn~~~-----------------------------~ld~allrpgRf~~~i~~~~p~~~~r 657 (807)
. +..+.+||+|||... .+.|+++. |++ +|.|.+++.++.
T Consensus 696 ~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l 772 (852)
T TIGR03345 696 VMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVL 772 (852)
T ss_pred eeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHH
Confidence 2 125789999999521 25577776 998 899999999999
Q ss_pred HHHHHHHhccC--------CCCCcc---cHHHHHHHccc--CChhhHHHHHHHHHHHHHHHHH
Q 003623 658 LQIFKACLRKS--------PVSKDV---DLRALAKYTQG--FSGADITEICQRACKYAIRENI 707 (807)
Q Consensus 658 ~~Il~~~l~~~--------~~~~~~---~~~~la~~~~g--~sg~di~~l~~~A~~~a~~~~~ 707 (807)
.+|++..+... ++.-.+ -++.|++...+ |-.+.++.+++.-...++.+.+
T Consensus 773 ~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 773 AAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99998776431 332222 24567766532 4467888888887777776654
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=5e-28 Score=292.32 Aligned_cols=453 Identities=23% Similarity=0.353 Sum_probs=292.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (807)
.++.+.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 467899999999999888764 235689999999999999999999886 367888988
Q ss_pred hhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 276 ~~l~--~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
..+. .+|.|+.+.+++.+++.+....++||||||+|.+........+ . .+. +++.....++.+.+||+|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~~a----~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--DAA----NILKPALARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--cHH----HHhHHHHhCCCcEEEEeCCH
Confidence 8776 4778999999999999998888899999999999876543221 1 111 22333334678999999987
Q ss_pred CC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC----CCC-CCchhHHHHHHhhCCCchh-----hHHHH
Q 003623 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----MKL-SDDVDLERIAKDTHGYVGA-----DLAAL 418 (807)
Q Consensus 354 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~----~~l-~~~~~l~~la~~t~g~~~~-----dl~~l 418 (807)
.+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ ..+..+..++..+.+|.+. ....+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 64 57899998 885 5889999999998988754321 111 2344577788888887653 22344
Q ss_pred HHHHHHHH-HHhhcccccc------------c------cch-------------hhHH--------------hhhccccc
Q 003623 419 CTEAALQC-IREKMDVIDL------------E------DET-------------IDAE--------------ILNSMAVT 452 (807)
Q Consensus 419 ~~~a~~~~-~~~~~~~~~~------------~------~~~-------------i~~~--------------~~~~~~v~ 452 (807)
+.+|+... +......... + +.. .... ......++
T Consensus 394 ld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 473 (821)
T CHL00095 394 LDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVT 473 (821)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccC
Confidence 45443321 1100000000 0 000 0000 00002244
Q ss_pred hhHHhhhhccCC--CCC-ccc----eeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcC----CCCcceeee
Q 003623 453 DEHFKTALGTSN--PSA-LRE----TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFY 521 (807)
Q Consensus 453 ~~d~~~al~~~~--ps~-~~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~giLL~ 521 (807)
.+++...+.... |.. +.. ........--+.+.|++.+.+.+...+... ..|+ +|...+||+
T Consensus 474 ~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~ 545 (821)
T CHL00095 474 EEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFS 545 (821)
T ss_pred HHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEE
Confidence 444444433321 110 000 000000011134677877777776665421 1122 223358999
Q ss_pred CCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh-----c-------ccCCchHHHHHHHHHHHhCCCeEEEEcccchh
Q 003623 522 GPPGCGKTLLAKAIANEC---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 522 GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l 586 (807)
||+|||||+||+++|..+ ..+++.++++++.. + |+|..+ .+.+.+..+..+.+|++|||||.+
T Consensus 546 Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 546 GPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred CCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC
Confidence 999999999999999987 46789998887632 2 333322 234667777777799999999985
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCCCC-------------------------
Q 003623 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------------------- 632 (807)
Q Consensus 587 ~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~------------------------- 632 (807)
. ..+.+.||+.|+... +.++.+||+|||....
T Consensus 624 ~--------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~ 689 (821)
T CHL00095 624 H--------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKR 689 (821)
T ss_pred C--------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHH
Confidence 3 457889999998531 2357899999995311
Q ss_pred ------------CCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC-------CCCCcc---cHHHHHHHc--ccCCh
Q 003623 633 ------------IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS-------PVSKDV---DLRALAKYT--QGFSG 688 (807)
Q Consensus 633 ------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~---~~~~la~~~--~g~sg 688 (807)
+.|.++. |+|.+|.|.+.+.++..+|++..+.+. ++.-.. -...|++.. ..|-.
T Consensus 690 ~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GA 767 (821)
T CHL00095 690 LSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGA 767 (821)
T ss_pred HHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCCh
Confidence 2355676 999999999999999999998777532 222222 245566642 23445
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003623 689 ADITEICQRACKYAIRENI 707 (807)
Q Consensus 689 ~di~~l~~~A~~~a~~~~~ 707 (807)
+.|+.+++.-...++.+.+
T Consensus 768 R~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 768 RPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 7888888777777766654
No 70
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.8e-28 Score=257.69 Aligned_cols=217 Identities=22% Similarity=0.300 Sum_probs=171.2
Q ss_pred Ccccc-cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhc
Q 003623 206 GYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (807)
Q Consensus 206 ~~~di-~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 284 (807)
+|+++ ||+--...-+.+++...- ......+++.+|.+++||||||||||++|+++|++++..++.++++++.+++.|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 665544333333332111 122334678999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh-----cCCeEEEEccchhhcCCcCCCchhHHHHHH-HHHHHHhhcc------------ccCCeEE
Q 003623 285 ESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHVI 346 (807)
Q Consensus 285 ~~~~~i~~if~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~-~~Ll~~ld~~------------~~~~~v~ 346 (807)
++++.++.+|+.|.. .+||||||||||++++.++.....+..+++ .+|++++|+. .....|+
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999975 469999999999999998766556655565 8999998863 2356799
Q ss_pred EEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCC----CchhhHHHHHHHH
Q 003623 347 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG----YVGADLAALCTEA 422 (807)
Q Consensus 347 vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~a 422 (807)
||+|||+|+.|||+|+|+|||++.+ +.|+.++|.+||+.+++...++ ..++..++..+.| |.|+--..+..++
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999965 6899999999999999988776 4778888888776 4455444455544
Q ss_pred HHHHH
Q 003623 423 ALQCI 427 (807)
Q Consensus 423 ~~~~~ 427 (807)
..+.+
T Consensus 348 v~~~i 352 (413)
T PLN00020 348 VRKWI 352 (413)
T ss_pred HHHHH
Confidence 44433
No 71
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.3e-28 Score=285.54 Aligned_cols=242 Identities=42% Similarity=0.712 Sum_probs=216.2
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhc
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 284 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g 284 (807)
..|.|+.|++..++.+.+++.. +..+..+..++...+++++|+||||||||+++++++++++.+++.++++++...+.+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 4688999999999999999887 667788888888889999999999999999999999999999999999999998999
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCC---chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHH
Q 003623 285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 361 (807)
Q Consensus 285 ~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al 361 (807)
.....++.+|+.+....||||||||+|.++.+++.. ......+++++|+..|+++.....++||++||+|+.+|+++
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al 307 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 307 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHH
Confidence 989999999999999999999999999999877542 22334568889999999998888999999999999999999
Q ss_pred HccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchh
Q 003623 362 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETI 441 (807)
Q Consensus 362 ~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i 441 (807)
+|++||++.++++.|+.++|.+||+.++++.++..+.++..++..|.||+|+|+..+|++|+..+.+..
T Consensus 308 ~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~----------- 376 (644)
T PRK10733 308 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----------- 376 (644)
T ss_pred hCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-----------
Confidence 999999999999999999999999999999998888999999999999999999999999999887653
Q ss_pred hHHhhhccccchhHHhhhhccCC
Q 003623 442 DAEILNSMAVTDEHFKTALGTSN 464 (807)
Q Consensus 442 ~~~~~~~~~v~~~d~~~al~~~~ 464 (807)
...++..|+..++..+.
T Consensus 377 ------~~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 377 ------KRVVSMVEFEKAKDKIM 393 (644)
T ss_pred ------CCcccHHHHHHHHHHHh
Confidence 22466777777766543
No 72
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=3.5e-27 Score=284.22 Aligned_cols=452 Identities=21% Similarity=0.353 Sum_probs=274.0
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 274 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~ 274 (807)
=.++++.|.++++.++.+++.. ....+++|+||||||||++++.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3577899999988888777654 234579999999999999999999987 56778887
Q ss_pred chhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEec
Q 003623 275 GPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (807)
Q Consensus 275 ~~~l~--~~~~g~~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (807)
...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+....+ .+ .. +.+.....++.+.+||+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~-~d--~~----~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-MD--AG----NMLKPALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc-hh--HH----HHhcchhhcCCCeEEEcC
Confidence 77665 46789999999999998654 56899999999999876543222 11 11 223333457889999999
Q ss_pred CCCC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-----CchhHHHHHHhhCCCchh-----hHH
Q 003623 352 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DLA 416 (807)
Q Consensus 352 n~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~ 416 (807)
+..+ .+|+++.| ||. .|.++.|+.+++..||+.+..++... .+..+...+..+++|... ...
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi 391 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAI 391 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHH
Confidence 9876 47999999 996 58899999999999999876655432 233445555666665421 111
Q ss_pred HHHHHHHHH-------------HHHhhc-------cccccccc------------h-------h-------hH--Hhh--
Q 003623 417 ALCTEAALQ-------------CIREKM-------DVIDLEDE------------T-------I-------DA--EIL-- 446 (807)
Q Consensus 417 ~l~~~a~~~-------------~~~~~~-------~~~~~~~~------------~-------i-------~~--~~~-- 446 (807)
.++..++.. .+.+.. .....+.. . + .. +..
T Consensus 392 ~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~ 471 (857)
T PRK10865 392 DLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSG 471 (857)
T ss_pred HHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 222221100 000000 00000000 0 0 00 000
Q ss_pred --------hc-----------------------------------------------cccchhHHhhhhccCC--CCC-c
Q 003623 447 --------NS-----------------------------------------------MAVTDEHFKTALGTSN--PSA-L 468 (807)
Q Consensus 447 --------~~-----------------------------------------------~~v~~~d~~~al~~~~--ps~-~ 468 (807)
.. ..++..++...+.... |-. +
T Consensus 472 ~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~ 551 (857)
T PRK10865 472 TQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRM 551 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhh
Confidence 00 0011111111111000 000 0
Q ss_pred c----ceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCC----CCcceeeeCCCCCcHHHHHHHHHHHh-
Q 003623 469 R----ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS----PSKGVLFYGPPGCGKTLLAKAIANEC- 539 (807)
Q Consensus 469 ~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~----~~~giLL~GppGtGKT~la~alA~~~- 539 (807)
. +........-...+.|++.+.+.+...+... ..|+. |...+||+||||||||++|+++|..+
T Consensus 552 ~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 552 LESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred hhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 0 0000000011233556665555555544321 11222 22358999999999999999999886
Q ss_pred --CCeEEEEeccchhhc------------ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHH
Q 003623 540 --QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (807)
Q Consensus 540 --~~~~i~v~~~~l~~~------------~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~ 605 (807)
+.+|+.++++++... |+|..+ -..+.+..+..+.+|||||||+.+. ..+.
T Consensus 624 ~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka~--------------~~v~ 687 (857)
T PRK10865 624 DSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKAH--------------PDVF 687 (857)
T ss_pred cCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhCC--------------HHHH
Confidence 457899998876431 222211 1223334445556899999998753 3467
Q ss_pred HHHHHHHcCC--C-------CCCcEEEeecCCCC-------------------------CCCCccccCCCCCcceeecCC
Q 003623 606 NQLLTEMDGM--S-------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYIPL 651 (807)
Q Consensus 606 ~~lL~~ld~~--~-------~~~~v~vi~aTn~~-------------------------~~ld~allrpgRf~~~i~~~~ 651 (807)
+.|++.|+.. . +.++.+||+|||.. ..+.|+|+. |+|.++.|.+
T Consensus 688 ~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~P 765 (857)
T PRK10865 688 NILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHP 765 (857)
T ss_pred HHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCC
Confidence 8888888642 1 13456889999972 135578887 9999999999
Q ss_pred CCHHHHHHHHHHHhccC-------CCCCccc---HHHHHHHcccCC----hhhHHHHHHHHHHHHHHHHH
Q 003623 652 PDEESRLQIFKACLRKS-------PVSKDVD---LRALAKYTQGFS----GADITEICQRACKYAIRENI 707 (807)
Q Consensus 652 p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~~~g~s----g~di~~l~~~A~~~a~~~~~ 707 (807)
++.+....|++.++.+. .+.-.++ +..|++. ||+ .+.|+.+++.-....+.+.+
T Consensus 766 L~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~--gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 766 LGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSEN--GYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHc--CCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999998777542 2222222 4445543 344 57888888887777766654
No 73
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=6.5e-27 Score=283.38 Aligned_cols=454 Identities=23% Similarity=0.363 Sum_probs=286.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (807)
.++.+.|.++++.++.+.+.. ....+++|+||||||||++++.+|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 567799999988888777654 234578999999999999999999886 556777776
Q ss_pred hhhh--hhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 276 PEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 276 ~~l~--~~~~g~~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
..+. .++.|+.+.+++.+|..+.. ..+.||||||+|.+...+.... .. ... +++.....++.+.+||+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~--d~~----~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM--DAG----NMLKPALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh--HHH----HHhchhhhcCceEEEEeCc
Confidence 6664 46788999999999998865 4589999999999986543221 11 112 2233333567899999998
Q ss_pred CCC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-----CchhHHHHHHhhCCCchh-----hHHH
Q 003623 353 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----DLAA 417 (807)
Q Consensus 353 ~~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----dl~~ 417 (807)
..+ .+|+++.| ||. .+.++.|+.+++..||+....++... .+..+...+..+++|... -...
T Consensus 311 ~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred HHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 763 57999999 995 58999999999999999876665543 344567777778877642 2233
Q ss_pred HHHHHHHHH-HH------------hhcccc-------ccc-cc-----------hh--------------hHHh--h---
Q 003623 418 LCTEAALQC-IR------------EKMDVI-------DLE-DE-----------TI--------------DAEI--L--- 446 (807)
Q Consensus 418 l~~~a~~~~-~~------------~~~~~~-------~~~-~~-----------~i--------------~~~~--~--- 446 (807)
++.+|+... +. +....+ ... +. .+ ..+. .
T Consensus 388 lld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03346 388 LIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGI 467 (852)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443211 10 000000 000 00 00 0000 0
Q ss_pred -------h-------------------------------------------------ccccchhHHhhhhccCC--CCC-
Q 003623 447 -------N-------------------------------------------------SMAVTDEHFKTALGTSN--PSA- 467 (807)
Q Consensus 447 -------~-------------------------------------------------~~~v~~~d~~~al~~~~--ps~- 467 (807)
. ...++.+++...++... |..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~ 547 (852)
T TIGR03346 468 QQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSK 547 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCccc
Confidence 0 00011111111111110 000
Q ss_pred cc----ceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcC----CCCcceeeeCCCCCcHHHHHHHHHHHh
Q 003623 468 LR----ETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 468 ~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~giLL~GppGtGKT~la~alA~~~ 539 (807)
+. +........-...+.|++.+.+.+...+... ..|+ +|...+||+||||||||++|+++|..+
T Consensus 548 ~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 548 MLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred ccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 00 0000000001234566666666655554321 1122 234459999999999999999999987
Q ss_pred ---CCeEEEEeccchhh-----c-------ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHH
Q 003623 540 ---QANFISVKGPELLT-----M-------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV 604 (807)
Q Consensus 540 ---~~~~i~v~~~~l~~-----~-------~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v 604 (807)
+.+++.++++++.. . |+|..+ .+.+....+..+.+|||||||+.+. ..+
T Consensus 620 ~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~--------------~~v 683 (852)
T TIGR03346 620 FDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH--------------PDV 683 (852)
T ss_pred cCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC--------------HHH
Confidence 46899999887642 2 233222 2345555566677899999999753 457
Q ss_pred HHHHHHHHcCCC---------CCCcEEEeecCCCCC-------------------------CCCccccCCCCCcceeecC
Q 003623 605 LNQLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIP 650 (807)
Q Consensus 605 ~~~lL~~ld~~~---------~~~~v~vi~aTn~~~-------------------------~ld~allrpgRf~~~i~~~ 650 (807)
.+.||+.|+.-. +.++.+||+|||... .+.|.|+. |+|.++.|.
T Consensus 684 ~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~ 761 (852)
T TIGR03346 684 FNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFH 761 (852)
T ss_pred HHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecC
Confidence 888888886431 135688999999821 23466776 999999999
Q ss_pred CCCHHHHHHHHHHHhcc-------CCCC---CcccHHHHHHHcc--cCChhhHHHHHHHHHHHHHHHHHH
Q 003623 651 LPDEESRLQIFKACLRK-------SPVS---KDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 651 ~p~~~~r~~Il~~~l~~-------~~~~---~~~~~~~la~~~~--g~sg~di~~l~~~A~~~a~~~~~~ 708 (807)
+++.+...+|+...+.. ..+. ++..++.|++... .+..+.|+++++......+.+.+-
T Consensus 762 PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 762 PLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999877642 1222 2233556666532 456789999999998888777653
No 74
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.2e-28 Score=295.18 Aligned_cols=199 Identities=21% Similarity=0.277 Sum_probs=167.7
Q ss_pred cccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhh------------------------
Q 003623 227 PLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL------------------------ 282 (807)
Q Consensus 227 ~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~------------------------ 282 (807)
|.+.+.....+|+.+++||||+||||||||.||+++|++++.+++.++++++...+
T Consensus 1615 ~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1615 PSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred cccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 33445566789999999999999999999999999999999999999999988643
Q ss_pred -----------------hchh--HHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc---
Q 003623 283 -----------------AGES--ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--- 340 (807)
Q Consensus 283 -----------------~g~~--~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--- 340 (807)
.+.. ..+++.+|+.|+..+||||||||||+++.+.. ....+.+|++.|++..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~ 1768 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERC 1768 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccC
Confidence 1111 23489999999999999999999999987621 1123688999998763
Q ss_pred cCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHH--hcCCCCCCc-hhHHHHHHhhCCCchhhHHH
Q 003623 341 SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 341 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~~ 417 (807)
...+|+||||||+|+.|||||+|||||++.|+++.|+..+|.+++..+ ++++.+..+ +++..+|..|.||+|+||++
T Consensus 1769 s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLan 1848 (2281)
T CHL00206 1769 STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVA 1848 (2281)
T ss_pred CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHH
Confidence 345799999999999999999999999999999999999999988754 455665543 57999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 003623 418 LCTEAALQCIREKM 431 (807)
Q Consensus 418 l~~~a~~~~~~~~~ 431 (807)
+|.+|++.++++..
T Consensus 1849 LvNEAaliAirq~k 1862 (2281)
T CHL00206 1849 LTNEALSISITQKK 1862 (2281)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999988753
No 75
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=266.44 Aligned_cols=453 Identities=23% Similarity=0.347 Sum_probs=297.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 275 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~ 275 (807)
.++-+.|-+++++++.+.+.... ..+-+|+|+||+|||.++.-+|... +..++.++-
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 46679999999999988886532 3467889999999999999999875 344566665
Q ss_pred hhhh--hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 276 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 276 ~~l~--~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
..+. .+|.|+.+.+++.++++.....+.||||||+|.+.......++.++ ..+++.....++.+-+||+|+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGATTL 308 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEeccH
Confidence 5554 4789999999999999999888999999999999877654221111 1234444446788889998875
Q ss_pred CC-----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCC-----chhHHHHHHhhCCCch-----hhHHHH
Q 003623 354 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD-----DVDLERIAKDTHGYVG-----ADLAAL 418 (807)
Q Consensus 354 ~~-----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~-----~~~l~~la~~t~g~~~-----~dl~~l 418 (807)
.+ .-|+||.| || ..|.+..|+.++-..||+-...++.... |.-+...+..++.|.. .-...+
T Consensus 309 ~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDL 385 (786)
T COG0542 309 DEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDL 385 (786)
T ss_pred HHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHH
Confidence 43 44899998 88 6689999999999999997766554332 2335555555555543 223345
Q ss_pred HHHHHHHHHHhhccccc------------cc------------cchhh-------------HHhhhccccchhHHhhhhc
Q 003623 419 CTEAALQCIREKMDVID------------LE------------DETID-------------AEILNSMAVTDEHFKTALG 461 (807)
Q Consensus 419 ~~~a~~~~~~~~~~~~~------------~~------------~~~i~-------------~~~~~~~~v~~~d~~~al~ 461 (807)
+.+|+....-....... .+ ...+. ...... .++.+++...+.
T Consensus 386 iDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~ 464 (786)
T COG0542 386 LDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVA 464 (786)
T ss_pred HHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHHH
Confidence 55544322110000000 00 00000 000000 134444544443
Q ss_pred cCC--CCC-c----cceeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcC----CCCcceeeeCCCCCcHHH
Q 003623 462 TSN--PSA-L----RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTL 530 (807)
Q Consensus 462 ~~~--ps~-~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~giLL~GppGtGKT~ 530 (807)
... |.. + ++........--..+.|++++...+.+.|.. .+.|+ +|..++||.||+|+|||.
T Consensus 465 ~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 465 RWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred HHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHH
Confidence 321 111 0 0111111111224477888877777766542 12232 344469999999999999
Q ss_pred HHHHHHHHhC---CeEEEEeccchhh------------cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCC
Q 003623 531 LAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 531 la~alA~~~~---~~~i~v~~~~l~~------------~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
||+++|..+. ..++++++|++.. .|||..+ =+.+-+..|+.+.|||+||||+.
T Consensus 537 LAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK---------- 604 (786)
T COG0542 537 LAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK---------- 604 (786)
T ss_pred HHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh----------
Confidence 9999999986 7899999999863 3566544 34566777888899999999987
Q ss_pred CCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCC----------------------------CCCCcccc
Q 003623 596 DAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP----------------------------DIIDPALL 638 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~----------------------------~~ld~all 638 (807)
++..|++-||+.||... +.++.+||+|||-- ..+.|+++
T Consensus 605 ----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL 680 (786)
T COG0542 605 ----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL 680 (786)
T ss_pred ----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH
Confidence 45679999999999642 23578999999942 13456777
Q ss_pred CCCCCcceeecCCCCHHHHHHHHHHHhccC-------CCCC---cccHHHHHHHc--ccCChhhHHHHHHHHHHHHHHHH
Q 003623 639 RPGRLDQLIYIPLPDEESRLQIFKACLRKS-------PVSK---DVDLRALAKYT--QGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 639 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~---~~~~~~la~~~--~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
. |+|.+|.|.+.+.+...+|+...+... .+.- +.-...|++.. ..|-++-|+.+++.-....+.+.
T Consensus 681 N--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~ 758 (786)
T COG0542 681 N--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADE 758 (786)
T ss_pred h--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999998877532 2221 12244566543 23555677777766665555554
Q ss_pred H
Q 003623 707 I 707 (807)
Q Consensus 707 ~ 707 (807)
+
T Consensus 759 i 759 (786)
T COG0542 759 I 759 (786)
T ss_pred H
Confidence 3
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.2e-24 Score=216.89 Aligned_cols=239 Identities=28% Similarity=0.402 Sum_probs=179.7
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhh-cCCCCcceeeeCCCCCcHHHHHHHHHHHhC---------CeEEEEec
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~i~v~~ 548 (807)
-|+.++--.++|+.|...+...+...+.-.+. -+...+-+||+||||||||+|+|++|..+. ...+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 48888888889998887665433222211111 123455699999999999999999999873 45799999
Q ss_pred cchhhcccCCchHHHHHHHHHHHh-----CCCeEEEEcccchhhhhcCC-CCCCCCccHHHHHHHHHHHHcCCCCCCcEE
Q 003623 549 PELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGS-SVGDAGGAADRVLNQLLTEMDGMSAKKTVF 622 (807)
Q Consensus 549 ~~l~~~~vg~se~~i~~lf~~a~~-----~~p~ilfiDEid~l~~~r~~-~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~ 622 (807)
..++++|+++|.+.+..+|++... ...-.++|||+++|+..|.. ++.......-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999998754 23346779999999999833 223334456899999999999999999999
Q ss_pred EeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC---CCC----------Cc-----ccHHHHHHH-c
Q 003623 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS---PVS----------KD-----VDLRALAKY-T 683 (807)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~---~~~----------~~-----~~~~~la~~-~ 683 (807)
+++|+|..+.||.|+.. |-|-+.|+++|+...|.+|++.++.++ ++- .. .....+++. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999998 999999999999999999999988653 111 00 112233333 4
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhh
Q 003623 684 QGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY 746 (807)
Q Consensus 684 ~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~ 746 (807)
.|.||+-|+.+---|...-.+ ..+|+..+|..||..
T Consensus 378 ~gLSGRtlrkLP~Laha~y~~---------------------------~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYFR---------------------------TFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhccC---------------------------CCccChHHHHHHHHH
Confidence 789998888765444322111 236888899888754
No 77
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.1e-23 Score=219.73 Aligned_cols=228 Identities=21% Similarity=0.329 Sum_probs=174.6
Q ss_pred eeeccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccc
Q 003623 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~ 550 (807)
...+.| -+|+.++--.+.|+.+.+-+...++..+.+++.|....+|.|||||||||||+++.|||+.+++..+-+.-++
T Consensus 192 v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~ 270 (457)
T KOG0743|consen 192 VGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE 270 (457)
T ss_pred cCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence 334444 6788888888999999999998999999999999999999999999999999999999999999998887665
Q ss_pred hhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCC---CCC-ccHHHHHHHHHHHHcCCCCC--CcEEEe
Q 003623 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG---DAG-GAADRVLNQLLTEMDGMSAK--KTVFII 624 (807)
Q Consensus 551 l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~---~~~-~~~~~v~~~lL~~ld~~~~~--~~v~vi 624 (807)
.. .... ++.+.-.+... +||+|++||+-+..|+.... +.+ ....-.++.||+.+||+-+. +--|||
T Consensus 271 v~-----~n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 271 VK-----LDSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred cc-----CcHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 42 2222 88888776544 69999999998765433221 111 12234689999999998543 367899
Q ss_pred ecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC-CCCcccHHHHHHHcccCChhhHHHHH-HH--HHH
Q 003623 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEIC-QR--ACK 700 (807)
Q Consensus 625 ~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~~~g~sg~di~~l~-~~--A~~ 700 (807)
+|||.++.|||||+||||+|.+||++..+.++-+.++++++.-.. -..-.++..+.+.++ .|+||+.... .. .+.
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad 421 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDAD 421 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHH
Confidence 999999999999999999999999999999999999999997532 111123334333333 6999998733 22 456
Q ss_pred HHHHHHHH
Q 003623 701 YAIRENIE 708 (807)
Q Consensus 701 ~a~~~~~~ 708 (807)
.|+++.++
T Consensus 422 ~~lk~Lv~ 429 (457)
T KOG0743|consen 422 VALKGLVE 429 (457)
T ss_pred HHHHHHHH
Confidence 66665544
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=6.5e-22 Score=210.15 Aligned_cols=216 Identities=23% Similarity=0.313 Sum_probs=166.3
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCC---cceeeeCCCCCcHHHHHHHHHHHhC-------CeEEEEecc
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 549 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~giLL~GppGtGKT~la~alA~~~~-------~~~i~v~~~ 549 (807)
+++++|++.+|+++.+.+.+ +.........|+.++ .+++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999998877 344556666776554 3489999999999999999998752 368999999
Q ss_pred chhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC
Q 003623 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (807)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. ......+++.|+..|+.. ..+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCc
Confidence 99999999999888999988753 59999999999754321 235678899999999854 356778888764
Q ss_pred CC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHH------cccCC-hhhHHHHHH
Q 003623 630 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKY------TQGFS-GADITEICQ 696 (807)
Q Consensus 630 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~------~~g~s-g~di~~l~~ 696 (807)
.. .++|++.+ ||+.+|+|++|+.+++.+|++.++++....-+ .....+... ...|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 34699998 99999999999999999999999976543321 223333332 23454 799999999
Q ss_pred HHHHHHHHHHHH
Q 003623 697 RACKYAIRENIE 708 (807)
Q Consensus 697 ~A~~~a~~~~~~ 708 (807)
.|......+.+.
T Consensus 249 ~~~~~~~~r~~~ 260 (287)
T CHL00181 249 RARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHc
Confidence 998877776543
No 79
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.8e-21 Score=207.10 Aligned_cols=212 Identities=22% Similarity=0.314 Sum_probs=165.8
Q ss_pred cccchhhhhhhhhhcccccCCChhhhhhhcCCC---CcceeeeCCCCCcHHHHHHHHHHHhC-------CeEEEEeccch
Q 003623 482 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 551 (807)
Q Consensus 482 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~giLL~GppGtGKT~la~alA~~~~-------~~~i~v~~~~l 551 (807)
+++|++++|+++.+.+.+ +..++.+...|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 55666777778764 34799999999999999999998763 37999999999
Q ss_pred hhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC--
Q 003623 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-- 629 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~-- 629 (807)
.+.|+|+++..++.+|+.|.. ++|||||++.+.+.++ .......+++.|+..|+.. ..+++||++++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998744 6999999999865432 1245678889999999853 356778887764
Q ss_pred CC---CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHc------ccC-ChhhHHHHHHHH
Q 003623 630 PD---IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYT------QGF-SGADITEICQRA 698 (807)
Q Consensus 630 ~~---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~------~g~-sg~di~~l~~~A 698 (807)
++ .++|++.+ ||+..|+||+|+.+++..|++.++++....-+ ..+..+.... +.+ ++++++++++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 35899999 99999999999999999999999987643322 2233444331 222 479999999988
Q ss_pred HHHHHHHH
Q 003623 699 CKYAIREN 706 (807)
Q Consensus 699 ~~~a~~~~ 706 (807)
......+.
T Consensus 250 ~~~~~~r~ 257 (284)
T TIGR02880 250 RLRQANRL 257 (284)
T ss_pred HHHHHHHH
Confidence 77666554
No 80
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=1.6e-21 Score=183.73 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=118.5
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCC-CeEEEEcccchhhhhcCCCCCC
Q 003623 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 596 (807)
Q Consensus 518 iLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~-p~ilfiDEid~l~~~r~~~~~~ 596 (807)
+||+||||||||++++.+|+.++.+++.++++++.+.+.+++++.++.+|+.+.... |+||||||+|.+..... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999988 99999999999999861 22
Q ss_pred CCccHHHHHHHHHHHHcCCCCC-CcEEEeecCCCCCCCCccccCCCCCcceeecCC
Q 003623 597 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 651 (807)
Q Consensus 597 ~~~~~~~v~~~lL~~ld~~~~~-~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~ 651 (807)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3456788999999999998765 679999999999999999998 89999999984
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=3e-21 Score=203.81 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=159.0
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCC---cceeeeCCCCCcHHHHHHHHHHHh-------CCeEEEEecc
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 549 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~giLL~GppGtGKT~la~alA~~~-------~~~~i~v~~~ 549 (807)
+++++|++.+|+.+++.+.|+... ......|+.++ .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999988876443 22233455433 458999999999999999999874 3478899999
Q ss_pred chhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC
Q 003623 550 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 629 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~ 629 (807)
++.+.|+|+++..++.+|+.|. .+||||||+|.|... .........++.|+..|+.. ..++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998875 369999999999631 11224567889999999865 344566665543
Q ss_pred CC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHc---------ccCChhhHHHH
Q 003623 630 PD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYT---------QGFSGADITEI 694 (807)
Q Consensus 630 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~~---------~g~sg~di~~l 694 (807)
.+ .++|++.+ ||+..|+||+|+.+++.+|++.+++.....-+. -+..+++.. ..-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 47889998 999999999999999999999999876543222 234443321 12356888888
Q ss_pred HHHHHHHHHHHHH
Q 003623 695 CQRACKYAIRENI 707 (807)
Q Consensus 695 ~~~A~~~a~~~~~ 707 (807)
+..|......+.+
T Consensus 231 ~e~a~~~~~~r~~ 243 (261)
T TIGR02881 231 IEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHh
Confidence 8887766655543
No 82
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-20 Score=195.52 Aligned_cols=184 Identities=29% Similarity=0.524 Sum_probs=146.1
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCC-eEEEEcccchhhhhc
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQR 590 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p-~ilfiDEid~l~~~r 590 (807)
..+.++||||||||||||+.|+-||..+|..+-.+.|.|+-- .-.+.-..|.++|+.+..+.. -+|||||+|.++..|
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCER 459 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHh
Confidence 346678999999999999999999999999998888887642 112334579999999987654 478999999999998
Q ss_pred CCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC
Q 003623 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 670 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 670 (807)
+.. ..+...+..+|.||-.-- ...++++++.+||+|..+|.|+-. |+|.+|+||+|..++|..++..|+.++-+
T Consensus 460 nkt--ymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 460 NKT--YMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred chh--hhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 653 334566777888876543 345678999999999999999998 99999999999999999999998865421
Q ss_pred C---------------------------CcccHHHHHHHcccCChhhHHHHHHHHHHHH
Q 003623 671 S---------------------------KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 671 ~---------------------------~~~~~~~la~~~~g~sg~di~~l~~~A~~~a 702 (807)
. .+.-+.+.|+.|+||||++|..++-.....+
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAav 592 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAV 592 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 1 0112567889999999999999886544433
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=3.6e-19 Score=167.54 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=118.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CeEEEEccchhhcCCcCCCchh
Q 003623 245 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 323 (807)
|||+||||||||++++.+|+.++.+++.+++.++.+.+.++..+.+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 799999999999999999999999999999999998889999999999999998887 9999999999999887545566
Q ss_pred HHHHHHHHHHHHhhccccC-CeEEEEEecCCCCCCCHHHHccCCcceEEEeCC
Q 003623 324 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~~~~-~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~ 375 (807)
....+.++|+..++..... .++++|++||.++.+++.+.| +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788999999999987765 569999999999999999998 89999999863
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=1.9e-17 Score=176.06 Aligned_cols=212 Identities=17% Similarity=0.298 Sum_probs=157.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCC---CceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEechh
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPE 277 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~ 277 (807)
.+++|+++++++|++++.+ +..+++.+.+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999999887 44567777777754 44699999999999999999998752 3588999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC--
Q 003623 278 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 355 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~-- 355 (807)
+.+.+.|+++..++.+|+.+. +++|||||++.+...++ ..+....++..|+.+|+... .+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHH
Confidence 999999988888888888764 46999999999865432 22345677888888887543 4567777765321
Q ss_pred ---CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC--CCCchhHHHHHHh------hCCCc-hhhHHHHHHHHH
Q 003623 356 ---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKD------THGYV-GADLAALCTEAA 423 (807)
Q Consensus 356 ---~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~--l~~~~~l~~la~~------t~g~~-~~dl~~l~~~a~ 423 (807)
.++|++++ ||+..++|+.++.+++.+|+..+++... +.++. ...+... ...|. ++.+..++..+.
T Consensus 175 ~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 175 KFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34689998 9999999999999999999998876543 33322 2222221 23344 688888888877
Q ss_pred HHHHHhh
Q 003623 424 LQCIREK 430 (807)
Q Consensus 424 ~~~~~~~ 430 (807)
.+...+.
T Consensus 252 ~~~~~r~ 258 (287)
T CHL00181 252 MRQANRI 258 (287)
T ss_pred HHHHHHH
Confidence 6654443
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=2.5e-17 Score=175.36 Aligned_cols=211 Identities=18% Similarity=0.296 Sum_probs=157.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCC---CceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEechhh
Q 003623 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 278 (807)
Q Consensus 209 di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLar~la~~l~-------~~~i~v~~~~l 278 (807)
+++|+++.+++|.+++.+ ...++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 599999999999999988 66777888888764 45899999999999999999988763 36889999999
Q ss_pred hhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC--C-
Q 003623 279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP--N- 355 (807)
Q Consensus 279 ~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~--~- 355 (807)
.+.+.|+++..++.+|+.+. +++|||||++.+.+.+. .......+...|+..|+.. +.+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 88888988888888888764 36999999999864432 1234456778888888753 3566777776542 2
Q ss_pred --CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhh------CCC-chhhHHHHHHHHHHH
Q 003623 356 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------HGY-VGADLAALCTEAALQ 425 (807)
Q Consensus 356 --~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t------~g~-~~~dl~~l~~~a~~~ 425 (807)
.++|++++ ||...|+++.++.+++..|++.++++.... +...+..+.... +.+ +++.+.+++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34899998 999999999999999999999887764322 222233333321 112 356777777777665
Q ss_pred HHHh
Q 003623 426 CIRE 429 (807)
Q Consensus 426 ~~~~ 429 (807)
...+
T Consensus 253 ~~~r 256 (284)
T TIGR02880 253 QANR 256 (284)
T ss_pred HHHH
Confidence 4443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=7.6e-17 Score=170.33 Aligned_cols=176 Identities=22% Similarity=0.320 Sum_probs=133.0
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCC---CCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEech
Q 003623 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 276 (807)
Q Consensus 207 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLar~la~~l-------~~~~i~v~~~ 276 (807)
+++++|+++.+++|++++.++... ......|+. ...+++|+||||||||++|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999998875433 233344554 34579999999999999999999875 2357888999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC--
Q 003623 277 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 354 (807)
Q Consensus 277 ~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~-- 354 (807)
++.+.+.|+....++.+|+.+. ++||||||+|.+....+ .......+..|+..|+... ..+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNR--NEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccC--CCEEEEecCCcchh
Confidence 9999999999999999998774 46999999999974221 1233456677888877643 345555444332
Q ss_pred ---CCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC
Q 003623 355 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK 393 (807)
Q Consensus 355 ---~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~ 393 (807)
..++|++++ ||...+.++.++.+++.+|++..+....
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 246789988 9999999999999999999998876543
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=2.1e-17 Score=164.16 Aligned_cols=189 Identities=26% Similarity=0.410 Sum_probs=125.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
..+++|++|+++++..+.-.+...... -.+..++|||||||+||||||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 447899999999999876654421111 12345799999999999999999999999999998886542
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C-----------CCc
Q 003623 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-----------KKT 620 (807)
Q Consensus 557 g~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~-----------~~~ 620 (807)
....+..++..... ..|||||||+++.. .+...|+..|+... + ..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12344555555433 46999999999853 35667788887631 1 146
Q ss_pred EEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcccCChhhHHHHHHHH
Q 003623 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~A 698 (807)
+.+|+||++...|.+.|.. ||.....+..++.++..+|++...+...+.-+.+ ..++|..+.| +++--.++++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8999999999999999998 9999899999999999999999888877664433 5678888776 455544555443
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=2.5e-17 Score=197.50 Aligned_cols=250 Identities=22% Similarity=0.289 Sum_probs=174.3
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v~ 547 (807)
-.++++.|.++....+.+.+. .....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 356778888876665554432 2345679999999999999999999987 67889999
Q ss_pred ccchh--hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEee
Q 003623 548 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~ 625 (807)
...+. .+|.|+.++.++.+|+.+....++||||||||.+.+.+..+. + ...+.+.|+..|. .+.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~----~-~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG----G-SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC----c-cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 589999999999999999877899999999999987643221 1 1223344444443 45789999
Q ss_pred cCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC----CC-CCcccHHHHHHHcccCChh-----h
Q 003623 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS----PV-SKDVDLRALAKYTQGFSGA-----D 690 (807)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~-~~~~~~~~la~~~~g~sg~-----d 690 (807)
|||..+ .+|+|+.| ||. .|+++.|+.+++.+|++...... .+ -.+..+..++..+..|-+. -
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 999743 57999999 997 79999999999999999766542 22 2344466666666554322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHH
Q 003623 691 ITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYAR----RSVSDADIRKYQAFAQTL 766 (807)
Q Consensus 691 i~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~----~s~s~~~~~~y~~~~~~~ 766 (807)
--.++.+|+....-+. . ......|+.+|+..++.... ..++.++...+....+.+
T Consensus 394 ai~lld~a~a~~~~~~---~------------------~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 394 AIDVIDEAGASFRLRP---K------------------AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHHHHhhhhhhcCc---c------------------cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 1233444432211000 0 00123589999999988663 245677788888777776
Q ss_pred hhccCCCC
Q 003623 767 QQSRGFGS 774 (807)
Q Consensus 767 ~~~~~~~~ 774 (807)
.. |=+|+
T Consensus 453 ~~-~v~GQ 459 (731)
T TIGR02639 453 KA-KIFGQ 459 (731)
T ss_pred hc-ceeCc
Confidence 54 55666
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=4.2e-17 Score=196.47 Aligned_cols=203 Identities=28% Similarity=0.387 Sum_probs=143.8
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh--------
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 552 (807)
+++.|++++++.+.+.+...... +-..+..++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999998876543211 112334699999999999999999999999999998765432
Q ss_pred -hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC-----CC--------CC
Q 003623 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MS--------AK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~-----~~--------~~ 618 (807)
..|+|.....+.+.|..+....| |+||||||.+.+.... + ..+.||..||. +. +.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D-------PASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C-------HHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888888899998877666 8999999999753211 1 24556666653 11 12
Q ss_pred CcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhc-----cCCCC------CcccHHHHHHH-cccC
Q 003623 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVS------KDVDLRALAKY-TQGF 686 (807)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~-----~~~~~------~~~~~~~la~~-~~g~ 686 (807)
.++++|+|||.++.|++++++ ||+ +|+|+.|+.+++.+|++.++. ...+. .+..+..+++. +..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 578999999999999999998 996 899999999999999988762 22221 22234555543 2223
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 003623 687 SGADITEICQRACKYAIR 704 (807)
Q Consensus 687 sg~di~~l~~~A~~~a~~ 704 (807)
..++|+..+...+..+.+
T Consensus 539 g~R~l~r~i~~~~~~~~~ 556 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAV 556 (775)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 345655555444444433
No 90
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.7e-17 Score=167.66 Aligned_cols=149 Identities=31% Similarity=0.443 Sum_probs=126.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEechhhhhhhhchhHHHHHHHHHHHHhc-----CCeEE
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAGESESNLRKAFEEAEKN-----APSII 305 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~-----~p~il 305 (807)
...+-|||+||||||||+|++++|+.+. ...+.+|+..++++|.+++.+.+..+|+..... .-..+
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4556799999999999999999999974 346899999999999999999999999987652 22456
Q ss_pred EEccchhhcCCcCCC----chhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHH
Q 003623 306 FIDEIDSIAPKREKT----HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGR 381 (807)
Q Consensus 306 ~iDEid~l~~~~~~~----~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R 381 (807)
+|||+++++..|... .....-|+++.+++++|.++...+|++++|+|-.+.||.|+.. |-|-..++++|+...+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAI 332 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHH
Confidence 799999998766321 1123458999999999999999999999999999999999987 8999999999999999
Q ss_pred HHHHHHHhc
Q 003623 382 LEVLRIHTK 390 (807)
Q Consensus 382 ~~Il~~~~~ 390 (807)
++|++....
T Consensus 333 ~~Ilkscie 341 (423)
T KOG0744|consen 333 YEILKSCIE 341 (423)
T ss_pred HHHHHHHHH
Confidence 999986543
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=6.3e-16 Score=168.93 Aligned_cols=234 Identities=22% Similarity=0.302 Sum_probs=166.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
...|+++.|.++.++.+...+..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 34789999999999988876642111 113456799999999999999999999999988777765432
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----------------CCCc
Q 003623 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 620 (807)
Q Consensus 557 g~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~ 620 (807)
....+..++... ..++||||||||.+... .. +.+...|+... ....
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~---e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VE---EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HH---HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 223345555543 34579999999998532 11 22333333211 1134
Q ss_pred EEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCChhhHHHHHHHHH
Q 003623 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A~ 699 (807)
+.+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+.- +..+..+++.+.|. ++.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 7889999999999999987 9999999999999999999998887765543 33477888888764 577777777665
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHhh
Q 003623 700 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARR---SVSDADIRKYQAFAQTLQQ 768 (807)
Q Consensus 700 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~---s~s~~~~~~y~~~~~~~~~ 768 (807)
..|..+. ...|+.+++..++..+.. .++..+.+.+..+.+.|..
T Consensus 228 ~~a~~~~-------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 228 DFAQVKG-------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHHcC-------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 5554321 125788888888876643 4666667777667777654
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=7e-16 Score=167.17 Aligned_cols=191 Identities=25% Similarity=0.347 Sum_probs=135.6
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCC
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 558 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~ 558 (807)
+|+++.|++++++.|...+..... .-..+.+++|+||||||||+||+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999998887642111 1133567999999999999999999999998876665543221
Q ss_pred chHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----------------CCCcEE
Q 003623 559 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 622 (807)
Q Consensus 559 se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~v~ 622 (807)
...+...+... ..+.++|||||+.+.+. ..+.|+..|+... ....++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 34579999999998542 1223344443211 123478
Q ss_pred EeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHH
Q 003623 623 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 623 vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~ 701 (807)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+. ++..+..+++.+.|+ ++.+..++..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 99999999999999988 999999999999999999999888765443 234467888888774 47777777766544
Q ss_pred H
Q 003623 702 A 702 (807)
Q Consensus 702 a 702 (807)
|
T Consensus 209 a 209 (305)
T TIGR00635 209 A 209 (305)
T ss_pred H
Confidence 4
No 93
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.9e-16 Score=163.21 Aligned_cols=178 Identities=30% Similarity=0.547 Sum_probs=134.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcC-CeEEEEccchhhcCCcC
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~-p~il~iDEid~l~~~~~ 318 (807)
.+-++|++|||||||||++|+-||...|..+-.+.|.++.. ...+.-..|..+|+.+.... .-+|||||.|+++-.+.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 34578999999999999999999999999988888877532 22345578999999997754 45789999998877665
Q ss_pred CCc-hhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC--
Q 003623 319 KTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-- 395 (807)
Q Consensus 319 ~~~-~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-- 395 (807)
... ++..+..++.|+---. .+...++++.+||+|..+|.++-. |++..++|++|..++|..+|..++.++.+.
T Consensus 461 ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 443 3344444444432221 123467777899999999999987 999999999999999999999877654311
Q ss_pred ----------------------C---chhHHHHHHhhCCCchhhHHHHHHHH
Q 003623 396 ----------------------D---DVDLERIAKDTHGYVGADLAALCTEA 422 (807)
Q Consensus 396 ----------------------~---~~~l~~la~~t~g~~~~dl~~l~~~a 422 (807)
. +..+.+.|+.|+||+|..|..|+...
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 0 11257889999999999999887644
No 94
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.67 E-value=4.4e-16 Score=184.18 Aligned_cols=198 Identities=23% Similarity=0.290 Sum_probs=141.3
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEec
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v~~ 548 (807)
.++.+.|.+...+.+.+.+.. ....++||+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 345666766655555544332 234568999999999999999999864 456666666
Q ss_pred cchh--hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeec
Q 003623 549 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (807)
Q Consensus 549 ~~l~--~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~a 626 (807)
..++ .+|.|+.+..++.+|+.+....++||||||||.|++.++.+ +....+.+.|...+ ....+.||+|
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~-----~g~~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC-----CcHHHHHHHHHHHH----hCCCeEEEec
Confidence 6665 47889999999999999988888999999999998865321 11122333332222 3567999999
Q ss_pred CCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccH-----HHHHHHccc-----CChhhH
Q 003623 627 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDL-----RALAKYTQG-----FSGADI 691 (807)
Q Consensus 627 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~-----~~la~~~~g-----~sg~di 691 (807)
||.++ .+|+||.| ||+ .|+++.|+.+++..|++.+..++....++.+ ...+..+.. +-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99875 57999999 997 8999999999999999988766555444443 333443433 333466
Q ss_pred HHHHHHHHHH
Q 003623 692 TEICQRACKY 701 (807)
Q Consensus 692 ~~l~~~A~~~ 701 (807)
..++.+|+..
T Consensus 399 idlldea~a~ 408 (758)
T PRK11034 399 IDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHh
Confidence 6778777754
No 95
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=1.5e-15 Score=151.06 Aligned_cols=181 Identities=28% Similarity=0.438 Sum_probs=119.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.+.+-+++|+.|+++.+..+.-++....... .+..++|||||||+||||||+.||++++..+...+++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 4667799999999999999877665432111 23468999999999999999999999999999988865421
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-----c-----------CCe
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-----------RAH 344 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~-----------~~~ 344 (807)
...+..++... ....||||||||.+.+ .+.+.|+..|+... . -.+
T Consensus 89 ------~~dl~~il~~l--~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ------AGDLAAILTNL--KEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ------CHHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ------HHHHHHHHHhc--CCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12233334333 3456999999998842 33456777776432 1 135
Q ss_pred EEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
+.+||||++...+.+.|+. ||.....+...+.++...|++.....+.+. ++....++|.++.|-
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 7899999999999999998 999988999999999999998766655543 334467888888874
No 96
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.9e-16 Score=165.05 Aligned_cols=201 Identities=26% Similarity=0.342 Sum_probs=142.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhch
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (807)
+|+.++=-.+.+++|.+=+..-.+..+.+++.|..-.+|.|||||||||||+++.|+|+.++..++.++-.+...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 455554445556666555555467788999999999999999999999999999999999999988777554322
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCch---h----HHHHHHHHHHHHhhccccCC--eEEEEEecCCCCC
Q 003623 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNS 356 (807)
Q Consensus 286 ~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~v~~~Ll~~ld~~~~~~--~v~vI~atn~~~~ 356 (807)
. ..++.++-... ..+||+|++||+-+.-+..... . ...-.+..||+.+||+.+.. .-++|.|||..+.
T Consensus 274 n-~dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 D-SDLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred c-HHHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 1 22667666653 3479999999987653321111 1 11234578999999998765 5677789999999
Q ss_pred CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCC--CchhhHH
Q 003623 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG--YVGADLA 416 (807)
Q Consensus 357 ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g--~~~~dl~ 416 (807)
|||||.||||.|.+|+++.=+..+-..+++.++..-. +..-..++.+..++ .+++++.
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHH
Confidence 9999999999999999999998888777776654311 12223344443333 3566654
No 97
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.65 E-value=5.8e-15 Score=149.02 Aligned_cols=233 Identities=23% Similarity=0.331 Sum_probs=166.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
...|++..|++++|+.|.-++....... ...-++|||||||.||||||..+|++++.++-..+++-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 4568899999999999987776432222 3456799999999999999999999999999888887663
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----------------CCCc
Q 003623 557 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 620 (807)
Q Consensus 557 g~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----------------~~~~ 620 (807)
....+..++...... +|+|||||+++.+. +-+-|.-.|+.+. +...
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 234455566665444 69999999998542 2233344555431 1246
Q ss_pred EEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcccCChhhHHHHHHHHH
Q 003623 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~A~ 699 (807)
+.+|+||.+.-.|...|.. ||..+..+..++.++..+|++...+.+.+.-+ ....++|+.+.| +++=-..++++.-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8999999999999998887 99999999999999999999999888776643 346788888876 4554445555554
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHh
Q 003623 700 KYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA---RRSVSDADIRKYQAFAQTLQ 767 (807)
Q Consensus 700 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~---~~s~s~~~~~~y~~~~~~~~ 767 (807)
..|.-.. ...|+.+-..+||... .-.+..-+++..+...++|.
T Consensus 229 Dfa~V~~-------------------------~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~ 274 (332)
T COG2255 229 DFAQVKG-------------------------DGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFG 274 (332)
T ss_pred HHHHHhc-------------------------CCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhC
Confidence 4443322 1245555555565543 23455566666677777664
No 98
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.8e-15 Score=157.47 Aligned_cols=175 Identities=26% Similarity=0.444 Sum_probs=123.9
Q ss_pred Ccccccccchhhhhh---hhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 477 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
..++++++|++++.- -|.+++. -....+++|||||||||||||+.||+..+..|..++.-
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---- 82 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---- 82 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc----
Confidence 456788888887532 2333322 13345699999999999999999999999999999863
Q ss_pred cccCCchHHHHHHHHHHHhCC----CeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecC--
Q 003623 554 MWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 627 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~~~~----p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aT-- 627 (807)
-.+-+.++.+|++|++.. ..|||+|||+++... -...||-.|+ +..+++||||
T Consensus 83 ---~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 83 ---TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred ---cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 245678999999996543 479999999998542 1345666665 5567888777
Q ss_pred CCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHh--ccCCCC------CcccHHHHHHHcccCChhhHHHHHH
Q 003623 628 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL--RKSPVS------KDVDLRALAKYTQGFSGADITEICQ 696 (807)
Q Consensus 628 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~------~~~~~~~la~~~~g~sg~di~~l~~ 696 (807)
|.--.|.+|+++ |.. ++.+.+.+.++...+++.-+ ...++. .+.-+..++..++ .|.+.+++
T Consensus 142 NPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN 211 (436)
T COG2256 142 NPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALN 211 (436)
T ss_pred CCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHH
Confidence 445689999998 885 78888999999999988733 222333 2333556666554 46555443
No 99
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.7e-15 Score=168.44 Aligned_cols=203 Identities=26% Similarity=0.367 Sum_probs=150.4
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh--------
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 552 (807)
.|-.|++++|+.+.+.+...... .-..+.-++|+||||+|||+|++.||..++..|++++-..+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 46779999999999876532111 111223489999999999999999999999999998754432
Q ss_pred -hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC---------C----CCC
Q 003623 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG---------M----SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~---------~----~~~ 618 (807)
..|+|.....+-+-..+|...+| ++++||||.+...-. ++. -+.||.-||- . -+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDP-------aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDP-------ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CCh-------HHHHHhhcCHhhcCchhhccccCccch
Confidence 46999999999999999999998 889999999976421 121 2344555542 1 134
Q ss_pred CcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhc-----cCCCCCcccHHHHHHHcccCChhhHHH
Q 003623 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-----KSPVSKDVDLRALAKYTQGFSGADITE 693 (807)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~-----~~~~~~~~~~~~la~~~~g~sg~di~~ 693 (807)
.+|++|+|+|..+.|+.+|+. |+. +|.++-++.++..+|.+.||= ..++..+ .-.|+...|..
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~---------el~i~d~ai~~ 532 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKG---------ELTITDEAIKD 532 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCcc---------ceeecHHHHHH
Confidence 689999999999999999998 997 999999999999999999882 2222211 11256677777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003623 694 ICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 694 l~~~A~~~a~~~~~~~~~~~ 713 (807)
+++.....|--|.+++.+..
T Consensus 533 iI~~YTREAGVR~LeR~i~k 552 (782)
T COG0466 533 IIRYYTREAGVRNLEREIAK 552 (782)
T ss_pred HHHHHhHhhhhhHHHHHHHH
Confidence 77777777766666655543
No 100
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1e-13 Score=162.52 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=107.7
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEechhhh
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIM 279 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i~v~~~~l~ 279 (807)
+|+.++.++++.+.+.. ...++-+|+|.||+|||.++.-+++.. +..++.++-..+.
T Consensus 189 igr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~ 255 (898)
T KOG1051|consen 189 IGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLV 255 (898)
T ss_pred cCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcc
Confidence 34458888887777654 223678999999999999999998775 1234444433232
Q ss_pred --hhhhchhHHHHHHHHHHHH-hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC-
Q 003623 280 --SKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN- 355 (807)
Q Consensus 280 --~~~~g~~~~~i~~if~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~- 355 (807)
.++.|+.+.+++.+..++. .....||||||++-+....... +. -. ..+++.....++.+.+||||....
T Consensus 256 aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~-~~--~d----~~nlLkp~L~rg~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 256 AGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNY-GA--ID----AANLLKPLLARGGLWCIGATTLETY 328 (898)
T ss_pred cCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcc-hH--HH----HHHhhHHHHhcCCeEEEecccHHHH
Confidence 4667889999999999988 4566799999999988765441 11 11 112222223345589999876322
Q ss_pred ----CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC
Q 003623 356 ----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (807)
Q Consensus 356 ----~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~ 391 (807)
.-+|++.+ ||+ .+.++.|....-..||.....+
T Consensus 329 ~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 329 RKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 34889988 774 4678999987766677655444
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-15 Score=167.58 Aligned_cols=165 Identities=28% Similarity=0.448 Sum_probs=130.5
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh--------
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 552 (807)
+|-.|++++|+.+.+++...... |-..++-++|+||||+|||++++.||..++..|++++-..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 57789999999999987642211 223345599999999999999999999999999998754332
Q ss_pred -hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC---------C----CCC
Q 003623 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG---------M----SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~---------~----~~~ 618 (807)
..|+|.....+-+..+...-.+| +++|||||.+.. +.. ++ . -+.||..||- + -+.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~q-GD---P----asALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQ-GD---P----ASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCC-CC---h----HHHHHHhcChhhccchhhhccccccch
Confidence 36999999999999999988888 888999999973 221 12 1 1344444442 1 234
Q ss_pred CcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhc
Q 003623 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR 666 (807)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 666 (807)
.+|++|||.|..+.|+++|+. |+. +|.++-+..++..+|.+.||-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 689999999999999999998 997 999999999999999999883
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=2.1e-14 Score=159.33 Aligned_cols=223 Identities=22% Similarity=0.288 Sum_probs=146.5
Q ss_pred cccchhhhhhhhhhcccccCCChhhhhh--hcC-CCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-hcccC
Q 003623 482 DIGGLENVKRELQETVQYPVEHPEKFEK--FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 557 (807)
Q Consensus 482 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~--~~~-~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~vg 557 (807)
.|+|++.+++.|...+............ -.. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3889999999887665321111100000 011 2346799999999999999999999999999999998875 46888
Q ss_pred CchH-HHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCCcE
Q 003623 558 ESEA-NVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 621 (807)
Q Consensus 558 ~se~-~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v 621 (807)
.... .+..+++.+ ....++||||||||.+...+.+.+...+-....+.+.||..|+|-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 7644 345555432 2346789999999999876432211112223568899999998631 11235
Q ss_pred EEeecCCCCC----------------------------------------------------CCCccccCCCCCcceeec
Q 003623 622 FIIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 622 ~vi~aTn~~~----------------------------------------------------~ld~allrpgRf~~~i~~ 649 (807)
++|.|+|-.. -+.|+|+ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6666666510 0245555 599999999
Q ss_pred CCCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHHH--cccCChhhHHHHHHHHHHHHHHHH
Q 003623 650 PLPDEESRLQIFKA----CLR-------KSPVS---KDVDLRALAKY--TQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 650 ~~p~~~~r~~Il~~----~l~-------~~~~~---~~~~~~~la~~--~~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
.+.+.++..+|+.. .++ ...+. ++.-+..|++. ..++-.+.|+.+++......+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 332 22222 22235567765 334556788888888777766554
No 103
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=2.4e-14 Score=172.73 Aligned_cols=164 Identities=23% Similarity=0.342 Sum_probs=123.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (807)
+++.|+++.++.|.+++..+...+ -..+.++||+||||||||++|++||+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458999999999998877543221 12345799999999999999999999999999888754321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc-----cc--------cCCeE
Q 003623 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK--------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~--------~~~~v 345 (807)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..++. +. ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24556666677777877765555 89999999998643222 12445555542 11 12478
Q ss_pred EEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh
Q 003623 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~ 389 (807)
++|+|||.++.++++|++ || ..|+++.|+.+++.+|++.++
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHH
Confidence 899999999999999998 88 478999999999999998764
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.58 E-value=1.7e-14 Score=156.31 Aligned_cols=176 Identities=26% Similarity=0.414 Sum_probs=129.3
Q ss_pred cccchhhhhhhhhhcccccCCChhhhhhh-cCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh-cccC-C
Q 003623 482 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 558 (807)
Q Consensus 482 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~~vg-~ 558 (807)
.|.|++++|+.+...+............+ .-.+++++||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999888876654211111000000 1124578999999999999999999999999999999998874 7888 5
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003623 559 SEANVREIFDKAR------------------------------------------------------------------- 571 (807)
Q Consensus 559 se~~i~~lf~~a~------------------------------------------------------------------- 571 (807)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6777787777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 003623 572 ------------------------------------------------------------------------QSAPCVLF 579 (807)
Q Consensus 572 ------------------------------------------------------------------------~~~p~ilf 579 (807)
...-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------CCCcEEEeecCC----CCCCCCccccCCCCCccee
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 647 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i 647 (807)
|||||.++.+.++...+. ...-|...||..|+|-. +.+++++||+.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~~Dv--S~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADV--SREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCCCCC--CccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999997653322222 23448899999999832 346788888875 4666667777 7999999
Q ss_pred ecCCCCHHHHHHHH
Q 003623 648 YIPLPDEESRLQIF 661 (807)
Q Consensus 648 ~~~~p~~~~r~~Il 661 (807)
.+.+++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=5.6e-14 Score=141.97 Aligned_cols=191 Identities=24% Similarity=0.375 Sum_probs=141.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.+.+-.|++..|+++.++++.-++....... ....|+||+||||.||||||+.+|++++..+...+++.+..
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 3456688999999999999988887543332 34568999999999999999999999999998888876632
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc----------c------CCe
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------S------RAH 344 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------~------~~~ 344 (807)
...+-.++... ...+||||||||.+.+. +.+.|...|+.+. + -++
T Consensus 91 ------~gDlaaiLt~L--e~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcC--CcCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22333444443 33479999999999654 2234555555432 1 246
Q ss_pred EEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHH
Q 003623 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
+.+||+|.+...+...|+. ||.....+...+.++..+|+......+.+. ++....++|+++.|. ++-...|+++
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHH
Confidence 8899999999999999998 999999999999999999998777666554 334567888888874 3333344443
No 106
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.2e-14 Score=162.74 Aligned_cols=186 Identities=23% Similarity=0.329 Sum_probs=136.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|++|+|++++++.|...+... +.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 457899999999999998876531 33456899999999999999999998865
Q ss_pred --------------eEEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHH
Q 003623 542 --------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 542 --------------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
.++.++... ..+-..++++.+.+. .....|+||||+|.|.. .
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------H 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------H
Confidence 222332221 112345666666543 33457999999999843 3
Q ss_pred HHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHH
Q 003623 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~ 682 (807)
..|.||+.|+. ...++++|++||.++.|.+.+++ || ..+.|..++.++..+.++..+.+.++..+ ..+..|++.
T Consensus 140 AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999885 34567888888999999999998 98 58999999999999999888766555433 336677877
Q ss_pred cccCChhhHHHHHHHHHH
Q 003623 683 TQGFSGADITEICQRACK 700 (807)
Q Consensus 683 ~~g~sg~di~~l~~~A~~ 700 (807)
++| +.++..+++..+..
T Consensus 215 A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 215 AQG-SMRDALSLTDQAIA 231 (700)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 765 56777777665543
No 107
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=7.3e-14 Score=166.82 Aligned_cols=204 Identities=22% Similarity=0.349 Sum_probs=142.2
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh--------
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 552 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------- 552 (807)
.++.|++++|+.+.+.+..... .+-.....++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4588999999999877653211 1112344599999999999999999999999999988755432
Q ss_pred -hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC-------------CCC
Q 003623 553 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 618 (807)
Q Consensus 553 -~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-------------~~~ 618 (807)
..|+|.....+.+.+..+....| |+||||||.+..... + ...+.||..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~-------g---~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR-------G---DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC-------C---CHHHHHHHHhccccEEEEecccccccccC
Confidence 35777777777777777665555 899999999865321 1 1346677777631 134
Q ss_pred CcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhcc-----CCCC------CcccHHHHHHH-cccC
Q 003623 619 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK-----SPVS------KDVDLRALAKY-TQGF 686 (807)
Q Consensus 619 ~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~------~~~~~~~la~~-~~g~ 686 (807)
.++++|||+|.. .|+|+|+. ||. +|.+++++.++..+|.+.++.. ..+. .+.-+..+++. +..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 8999999999999999988841 1111 11224445532 2223
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 003623 687 SGADITEICQRACKYAIREN 706 (807)
Q Consensus 687 sg~di~~l~~~A~~~a~~~~ 706 (807)
-.+.|+.+++..+..++.+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 34677777766555555543
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=1.7e-14 Score=174.66 Aligned_cols=165 Identities=21% Similarity=0.366 Sum_probs=126.2
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v~ 547 (807)
-.++++.|.++..+.+.+.+. .....+++|+||||||||++++++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 356778888875554444332 2345579999999999999999999987 67888888
Q ss_pred ccchh--hcccCCchHHHHHHHHHHHh-CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEe
Q 003623 548 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~lf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 624 (807)
...+. .+|.|+.++.++.+|+.... ..++||||||||.|.+.++.. +. ....+.|...| ..+.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcchh----hcCCCeEE
Confidence 88776 56899999999999998644 568999999999998765321 11 11223333222 46689999
Q ss_pred ecCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC
Q 003623 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 668 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 668 (807)
|||+..+ .+|+|+.| ||+ .|+++.|+.+++..|++......
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9999987 48999999 998 68999999999999998876554
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=1.7e-14 Score=174.13 Aligned_cols=184 Identities=22% Similarity=0.347 Sum_probs=133.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v 546 (807)
.-.++++.|.++..+.+.+.+. .....+++|+||||||||++++.+|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3457788888876554444322 1344579999999999999999999876 2457777
Q ss_pred eccchh--hcccCCchHHHHHHHHHHHh-CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEE
Q 003623 547 KGPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 547 ~~~~l~--~~~vg~se~~i~~lf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~v 623 (807)
+...+. ..|.|+.++.++.+|+.+.. ..++|||||||+.+.+.++... ... .-+.|+-.| ..+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~--~~d----~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG--QGD----AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc--ccc----HHHHhhHHh----hCCCeEE
Confidence 777665 36889999999999999865 4679999999999988754321 111 223333333 3567899
Q ss_pred eecCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC----C-CCcccHHHHHHHcccC
Q 003623 624 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP----V-SKDVDLRALAKYTQGF 686 (807)
Q Consensus 624 i~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~-~~~~~~~~la~~~~g~ 686 (807)
||||+..+ .+||||.| ||. .|.++.|+.+++..||+.+.+... + ..+..+..+++.+.+|
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 99998753 48999999 996 899999999999999876664432 2 1345567777777665
No 110
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=2.2e-14 Score=155.55 Aligned_cols=176 Identities=26% Similarity=0.419 Sum_probs=129.5
Q ss_pred cccchhhhhhhhhhcccccCCChhhhhhhc-CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh-cccC-C
Q 003623 482 DIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 558 (807)
Q Consensus 482 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~-~~vg-~ 558 (807)
.|.|++++|+.+..++.............. -..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 478999999988776632111100000000 012578999999999999999999999999999999998885 6999 5
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q 003623 559 SEANVREIFDKAR------------------------------------------------------------------- 571 (807)
Q Consensus 559 se~~i~~lf~~a~------------------------------------------------------------------- 571 (807)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777771
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 003623 572 ---Q--------------------------------------------------------------------SAPCVLFF 580 (807)
Q Consensus 572 ---~--------------------------------------------------------------------~~p~ilfi 580 (807)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------CCCcEEEeecCC----CCCCCCccccCCCCCcceee
Q 003623 581 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 581 DEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf~~~i~ 648 (807)
||||.++...+++..+ -...-|...||..|+|-. +.+++++||+.- .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~~~D--vS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSSGPD--VSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCCCCC--CCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999875432222 223458899999999832 346788888764 4666778887 69999999
Q ss_pred cCCCCHHHHHHHH
Q 003623 649 IPLPDEESRLQIF 661 (807)
Q Consensus 649 ~~~p~~~~r~~Il 661 (807)
+.+++.+...+||
T Consensus 332 L~~L~~~dL~~IL 344 (443)
T PRK05201 332 LDALTEEDFVRIL 344 (443)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999998
No 111
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=7.2e-14 Score=155.46 Aligned_cols=202 Identities=24% Similarity=0.300 Sum_probs=128.8
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC---------CeEEEEeccch
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 551 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~---------~~~i~v~~~~l 551 (807)
+++.|.++..+.|...+...+. + ..+.+++|+||||||||++++++++++. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4677888777777666542111 1 2345699999999999999999998753 56788887553
Q ss_pred hh----------ccc--CC-------c-hHHHHHHHHHHH-hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHH
Q 003623 552 LT----------MWF--GE-------S-EANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (807)
Q Consensus 552 ~~----------~~v--g~-------s-e~~i~~lf~~a~-~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~ 610 (807)
.+ ... |. + .+....+++... ...+.||+|||+|.+... ...++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 22 111 11 1 223445555543 345789999999999731 0124555554
Q ss_pred HHcC-CCCCCcEEEeecCCCCC---CCCccccCCCCCc-ceeecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHH
Q 003623 611 EMDG-MSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKS---PVSKDVDLRALAKY 682 (807)
Q Consensus 611 ~ld~-~~~~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~ 682 (807)
..+. -....++.+|+++|.++ .+++.+.+ ||. ..|+|++|+.++..+|++..++.. ....+.-+..+++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 4221 12236789999999886 57888877 775 789999999999999999988631 12222223444443
Q ss_pred c---ccCChhhHHHHHHHHHHHHHHH
Q 003623 683 T---QGFSGADITEICQRACKYAIRE 705 (807)
Q Consensus 683 ~---~g~sg~di~~l~~~A~~~a~~~ 705 (807)
. .| ..+.+..+|+.|...|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 3 33 2345556888888777654
No 112
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.55 E-value=2.2e-13 Score=148.96 Aligned_cols=192 Identities=24% Similarity=0.372 Sum_probs=135.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 280 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~ 280 (807)
.+.+..|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 445668999999999999998887542111 134678999999999999999999999999887777654321
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc----------------cCCe
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 344 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~ 344 (807)
...+..++... ..+++|||||+|.+.... + ..|...++... ....
T Consensus 90 ------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------~----e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 90 ------PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------E----EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ------hHHHHHHHHhc--ccCCEEEEecHhhcchHH-------H----HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 12333344332 346799999999885321 1 12333333221 1134
Q ss_pred EEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHH
Q 003623 345 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (807)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (807)
+.+|++|+++..++++|++ ||...+.++.|+.+++.+|++.......+. ++..+..++..+.|+. ..+..++..+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7889999999999999987 898889999999999999999776654433 3345788899998865 4444445443
No 113
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.55 E-value=5.3e-14 Score=162.24 Aligned_cols=210 Identities=25% Similarity=0.334 Sum_probs=143.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v 546 (807)
..+|+++.|.+...+.++..+.. ..+.++||+||||||||++|+++.+.+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 45789999999888887754321 234579999999999999999998653 3578999
Q ss_pred eccch-------hhcccCCchHHH----------------HHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHH
Q 003623 547 KGPEL-------LTMWFGESEANV----------------REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 547 ~~~~l-------~~~~vg~se~~i----------------~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
++... ....+|.....+ ...+..| ...+||||||+.|.. .
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~--------------~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP--------------V 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH--------------H
Confidence 87531 111111100000 0012222 236999999999854 2
Q ss_pred HHHHHHHHHcCC---------------------------CCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHH
Q 003623 604 VLNQLLTEMDGM---------------------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEES 656 (807)
Q Consensus 604 v~~~lL~~ld~~---------------------------~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~ 656 (807)
..+.||..|+.- ...+-.+|++|||.|+.|+|++.+ |+. .|+|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 456666655421 011224566677889999999998 985 78899999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccc
Q 003623 657 RLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEI 735 (807)
Q Consensus 657 r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 735 (807)
+..|++..+++..+. ++..++.++..+ ++++++.++++.|+..|..+. ...|
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~-------------------------~~~I 320 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG-------------------------RKRI 320 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------------------------CcEE
Confidence 999999999876644 233355666655 489999999999988775432 1368
Q ss_pred cHHHHHHHHhh
Q 003623 736 KAVHFEESMKY 746 (807)
Q Consensus 736 ~~~~f~~al~~ 746 (807)
+.+|++.++..
T Consensus 321 t~~dI~~vl~~ 331 (531)
T TIGR02902 321 LAEDIEWVAEN 331 (531)
T ss_pred cHHHHHHHhCC
Confidence 99999999863
No 114
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.55 E-value=2.3e-13 Score=147.47 Aligned_cols=187 Identities=23% Similarity=0.350 Sum_probs=130.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhch
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 285 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~ 285 (807)
+|+++.|.++.+++|+.++......+ ..+.+++|+||||||||+||+++|.+++..+..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 57899999999999988886422111 34567999999999999999999999998876665543211
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc----------------cCCeEEEEE
Q 003623 286 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 349 (807)
Q Consensus 286 ~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~----------------~~~~v~vI~ 349 (807)
...+...+... ..+.++||||++.+.+.. ...|...++... ....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222222222 356799999999886431 122344443222 123478889
Q ss_pred ecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHH
Q 003623 350 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (807)
Q Consensus 350 atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (807)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..+..++..+.|+. ..+..++..+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 99999999999988 898889999999999999999776543332 3445788999998875 4445555544
No 115
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.54 E-value=8.8e-14 Score=153.36 Aligned_cols=223 Identities=21% Similarity=0.307 Sum_probs=146.2
Q ss_pred cccchhhhhhhhhhcccccCCChhh----hhhhcCC-CCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-hcc
Q 003623 482 DIGGLENVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 555 (807)
Q Consensus 482 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~ 555 (807)
.+.|++++++.+...+......... ...-++. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3789999999887665211111000 0000111 235799999999999999999999999999999888765 368
Q ss_pred cCCc-hHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCC
Q 003623 556 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 619 (807)
Q Consensus 556 vg~s-e~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~ 619 (807)
+|.. +..+..+++.+ ....++||||||||.+...+.+.+....-....+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8886 44455555432 2346789999999999876432211111223468899999998742 123
Q ss_pred cEEEeecCCCC---------------------------C-----------------------CCCccccCCCCCcceeec
Q 003623 620 TVFIIGATNRP---------------------------D-----------------------IIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 620 ~v~vi~aTn~~---------------------------~-----------------------~ld~allrpgRf~~~i~~ 649 (807)
+.++|.|+|-. + -+.|+|+ ||+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 56788888861 0 0335666 599999999
Q ss_pred CCCCHHHHHHHHHHH----hcc-------CCCCC---cccHHHHHHHc--ccCChhhHHHHHHHHHHHHHHHH
Q 003623 650 PLPDEESRLQIFKAC----LRK-------SPVSK---DVDLRALAKYT--QGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 650 ~~p~~~~r~~Il~~~----l~~-------~~~~~---~~~~~~la~~~--~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
.+.+.++..+|+... +++ .++.- +.-++.|++.. ..+-.+-|+.+++...+.++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998753 221 12222 22356677653 34556788888888777666554
No 116
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.3e-13 Score=158.44 Aligned_cols=186 Identities=20% Similarity=0.289 Sum_probs=136.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|++|+|++++++.|...+.. -+.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 35799999999999999887653 133456899999999999999999998754
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++..+ ..+-..++.+.+.+.. ....|+||||+|.|.. ...|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHH
Confidence 233333221 1123446666666543 3457999999999832 347888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ..++.+|++||.++.|.+.+++ ||. .+.|..++.++..++|+..+++.++. ++..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988853 4467888888889999999998 994 89999999999999999888766554 34456778887776 4
Q ss_pred hhhHHHHHHHHHH
Q 003623 688 GADITEICQRACK 700 (807)
Q Consensus 688 g~di~~l~~~A~~ 700 (807)
.++..+++..+..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655553
No 117
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=5.9e-14 Score=155.91 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=127.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|+++.|++++.+.|...+... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 457899999999999888776521 234458999999999999999999988652
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ...-..+|++.+.+. .....|+||||+|.|.. ..++.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~--------------~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD--------------QSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH--------------HHHHHH
Confidence 22222211 111334565555443 33457999999999732 367888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+. ....+++|++|+.++.|.+++++ |+. +++|.+++.++..+.++..+.+.++. .+..+..|++.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 999875 34578888888889999999998 996 78899888888888888887766543 33345566665554 2
Q ss_pred hhhHHHHH
Q 003623 688 GADITEIC 695 (807)
Q Consensus 688 g~di~~l~ 695 (807)
.++.-+++
T Consensus 216 ~RdAL~lL 223 (484)
T PRK14956 216 VRDMLSFM 223 (484)
T ss_pred HHHHHHHH
Confidence 34444444
No 118
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=1.3e-13 Score=155.09 Aligned_cols=203 Identities=24% Similarity=0.336 Sum_probs=130.7
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhh--
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLT-- 553 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~-- 553 (807)
+.+.|-++..+.|...+...+. + ..+.+++|+||||||||++++.+++++ +..++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 4456666655556555432111 1 234569999999999999999999876 46788888764321
Q ss_pred --------cccC-------Cc-hHHHHHHHHHHHh-CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC
Q 003623 554 --------MWFG-------ES-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 616 (807)
Q Consensus 554 --------~~vg-------~s-e~~i~~lf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~ 616 (807)
...+ .+ ...+..+++.... ..+.||+|||+|.+.... ...++..|+..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC
Confidence 1112 11 2233344443332 356899999999997221 1235777777666553
Q ss_pred CCCcEEEeecCCCCC---CCCccccCCCCCc-ceeecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHcccCCh-
Q 003623 617 AKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEESRLQIFKACLRKS---PVSKDVDLRALAKYTQGFSG- 688 (807)
Q Consensus 617 ~~~~v~vi~aTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~~~g~sg- 688 (807)
..++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++.. ....+..++.+++.+.+.+|
T Consensus 171 -~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 -GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred -CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 33788888888764 56777765 664 679999999999999999888542 12234446777777755443
Q ss_pred -hhHHHHHHHHHHHHHHH
Q 003623 689 -ADITEICQRACKYAIRE 705 (807)
Q Consensus 689 -~di~~l~~~A~~~a~~~ 705 (807)
+.+-.+|+.|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 34446777777776554
No 119
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.6e-13 Score=145.29 Aligned_cols=175 Identities=30% Similarity=0.481 Sum_probs=124.0
Q ss_pred cCCCCCcccccChHHHH---HHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 003623 201 RLDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~---~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
.+.+-++++++|+++.+ .-|++++.. ..-.+++|||||||||||||+.||+..+..|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 45667899999999876 335666654 23457999999999999999999999999999998643
Q ss_pred hhhhhhchhHHHHHHHHHHHHhc----CCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC-
Q 003623 278 IMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn- 352 (807)
..-+.++.+++.++.. ...|||+||||.+-...+ ..|+..++ .+.|++||+|.
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccCC
Confidence 2346788899988543 357999999999854432 33555443 46788887653
Q ss_pred CC-CCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh--cCCCCC------CchhHHHHHHhhCCCchh
Q 003623 353 RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT--KNMKLS------DDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 353 ~~-~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~--~~~~l~------~~~~l~~la~~t~g~~~~ 413 (807)
+| -.+.++|++ |. +.+++.+.+.++-..+++... ..-.+. ++.-+..++..+.|-..+
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 44 589999998 44 457888889988888887622 111122 333466677777764433
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=6.5e-14 Score=154.69 Aligned_cols=187 Identities=24% Similarity=0.344 Sum_probs=129.9
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe----------------
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 542 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~---------------- 542 (807)
.|++|+|++.+++.|+..+..+..+. ..++...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48999999999999999987654322 22344456779999999999999999999876432
Q ss_pred -------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHH
Q 003623 543 -------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 611 (807)
Q Consensus 543 -------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ 611 (807)
+..+.. +- . .-.-..+|.+++.+... ...|+||||+|.+.. ...|.||..
T Consensus 80 ~~~~hpD~~~i~~-~~--~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAP-EG--L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecc-cc--c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHH
Confidence 111111 10 0 01234578888877643 346999999999843 235788998
Q ss_pred HcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhH
Q 003623 612 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI 691 (807)
Q Consensus 612 ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di 691 (807)
|+.-. ...++|++|+| ++.|.|++++ |+ ..++|++|+.++..+++.... ++. ......++..+.|..+..+
T Consensus 141 LEep~-~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEPP-PRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcCC-CCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 88532 23445554444 8999999998 98 499999999998887776322 332 3456678888888777666
Q ss_pred HHHHH
Q 003623 692 TEICQ 696 (807)
Q Consensus 692 ~~l~~ 696 (807)
..+..
T Consensus 212 ~l~~~ 216 (394)
T PRK07940 212 RLATD 216 (394)
T ss_pred HHhcC
Confidence 55443
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.53 E-value=8.5e-14 Score=158.57 Aligned_cols=173 Identities=21% Similarity=0.327 Sum_probs=119.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
..+++||||||||||+|++++++++ +..++.+++.++.+.+..........-|..... .+.+|+||||+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3469999999999999999999987 456888898887765543322111122332222 4679999999998653
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC---CCccccCCCCCc--ceeecCCCCHHHHHHHHHHH
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (807)
+ .....|+..++.+...++.+||+++..|.. +++.+.+ ||. ..+.+.+|+.++|.+|++..
T Consensus 227 ~------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 123445555555444445567766666654 6788887 996 58999999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHH
Q 003623 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 665 l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~ 703 (807)
+...++. ++.-++.||+...| +.++|..++......+.
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 8765543 33447777776654 56777777776655543
No 122
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.53 E-value=2.2e-13 Score=153.30 Aligned_cols=180 Identities=28% Similarity=0.443 Sum_probs=123.8
Q ss_pred cccccccchhhhhhh---hhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc
Q 003623 478 VNWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 554 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~ 554 (807)
.++++++|.+++... |...+.. ....+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 457888898887554 6555432 223479999999999999999999999999999887532
Q ss_pred ccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecC--C
Q 003623 555 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 628 (807)
Q Consensus 555 ~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aT--n 628 (807)
+...++.+++.+. .....||||||||.+.. ...+.|+..++. ..+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2345666776664 23567999999998743 234566666653 346666655 3
Q ss_pred CCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC--CC--CCcccHHHHHHHcccCChhhHHHHHHHHH
Q 003623 629 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS--PV--SKDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 629 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--~~--~~~~~~~~la~~~~g~sg~di~~l~~~A~ 699 (807)
....+++++++ || ..+.|++++.++...+++..+... ++ ..+..+..+++.+.| +.+.+.+++..+.
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34588999998 98 689999999999999999877542 11 122335566666533 3444445554443
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=1.2e-13 Score=155.37 Aligned_cols=172 Identities=22% Similarity=0.347 Sum_probs=118.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCch-HHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
...++||||+|+|||+|++++++++ +..++.+++.++...+..... ..+..+.+..+ .+.+|+||||+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3469999999999999999999986 567888998887655432211 11222222222 257999999999864
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC---CCccccCCCCCc--ceeecCCCCHHHHHHHHHH
Q 003623 589 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKA 663 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~ 663 (807)
.. .....|+..++.+...++.+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 214 ~~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 31 123344555544433445567766666654 5677876 997 4799999999999999999
Q ss_pred HhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHH
Q 003623 664 CLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 664 ~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~ 703 (807)
.++..++. ++..++.||+...+ +.+++..++......|.
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 99876554 34446778877653 67888888877665554
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.51 E-value=7.2e-14 Score=170.07 Aligned_cols=183 Identities=22% Similarity=0.365 Sum_probs=134.3
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v~ 547 (807)
-.++.+.|.++..+.+.+.+. .....+++|+||||||||++++++|..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 356778888876555544332 2345679999999999999999999885 56788888
Q ss_pred ccchh--hcccCCchHHHHHHHHHHHhC-CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEe
Q 003623 548 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~lf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 624 (807)
...++ .+|.|+.++.++.+|+.+... .++||||||||.|.+.++.. +. ....+.|... .....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~----l~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPA----LARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchh----hhcCceEEE
Confidence 77775 578999999999999998654 58999999999998754221 11 1233333222 245679999
Q ss_pred ecCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-----cccHHHHHHHcccC
Q 003623 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-----DVDLRALAKYTQGF 686 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-----~~~~~~la~~~~g~ 686 (807)
|+|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+..+..... +..+..++..+.+|
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 9999874 57999999 997 689999999999999998776654432 33455666665554
No 125
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-13 Score=148.26 Aligned_cols=185 Identities=22% Similarity=0.318 Sum_probs=131.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
+.+|+++.|++++++.+...+.. + ..+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45799999999999998876642 1 234568999999999999999999987532
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ...-..++.+.+.+... ...|+||||+|.+.. ...+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------------~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------------HSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------------HHHHHH
Confidence 22222211 01234566666665432 346999999998732 346778
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. ++..+..+++.+.| +
T Consensus 140 Lk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888854 3356666677778888888887 88 489999999999999999888776543 34456777877765 5
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 ~R~al~~l~~~~ 225 (363)
T PRK14961 214 MRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 126
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.8e-13 Score=150.62 Aligned_cols=171 Identities=20% Similarity=0.317 Sum_probs=123.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
+.+|+++.|++++++.|...+... ..+.++||+||||||||++|+++|+.+.+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 457899999999988888765531 34556999999999999999999998754
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++. ...-..++.+.+.+... ...|+|+||+|.+.. ..++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHH
Confidence 344444421 11234566666655432 346999999999843 246778
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcc
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQ 684 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~ 684 (807)
|..|+.. ...+++|++|+.|+.+++++.+ |+. .+.|.+|+.++...+++..++..++. ++..+..|++.+.
T Consensus 138 Lk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 138 LKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 8888753 3456677777778899999998 885 89999999999999999888665443 3344667777654
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=7.5e-14 Score=169.50 Aligned_cols=185 Identities=25% Similarity=0.373 Sum_probs=138.7
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEe
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 547 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v~ 547 (807)
-.|+.+.|.+...+.+.+.+. .....+++|+||||||||++|+.+|... +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 457888888877777766543 2455689999999999999999999886 36889999
Q ss_pred ccchh--hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEee
Q 003623 548 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 548 ~~~l~--~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~ 625 (807)
...++ .+|.|+.++.++.+|+.+....++||||||||.|.+.++.. ++ ..+.+-|...| ..+.+.+||
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~-----~~~a~lLkp~l----~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA-----IDAANILKPAL----ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc-----ccHHHHhHHHH----hCCCcEEEE
Confidence 88887 58899999999999999988888999999999998765321 11 11222232233 356788999
Q ss_pred cCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhcc----CCC-CCcccHHHHHHHcccCCh
Q 003623 626 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRK----SPV-SKDVDLRALAKYTQGFSG 688 (807)
Q Consensus 626 aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~-~~~~~~~~la~~~~g~sg 688 (807)
+|+..+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+ ..+..+..++..+.+|-+
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 999764 57999999 997 5899999999999998765432 222 234446677777776644
No 128
>PRK04195 replication factor C large subunit; Provisional
Probab=99.49 E-value=2.5e-13 Score=155.81 Aligned_cols=191 Identities=25% Similarity=0.336 Sum_probs=134.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
..+++++.|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++.+++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 44688999999999999887653211 1 23678999999999999999999999999999999877532
Q ss_pred CCchHHHHHHHHHHHh------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC
Q 003623 557 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 557 g~se~~i~~lf~~a~~------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (807)
...++.+...+.. ..+.+|||||+|.+.... ....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1233333333322 246799999999986421 11234566666652 234566778888
Q ss_pred CCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHH
Q 003623 631 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a 702 (807)
..+.+.-+| +....|.|++|+..++..+++..+...++. ++..+..|++.+ +.|++.+++.....+
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHh
Confidence 888773344 334589999999999999999988766553 334466777654 568888887665533
No 129
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.5e-13 Score=152.54 Aligned_cols=185 Identities=21% Similarity=0.294 Sum_probs=134.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|++++|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 35799999999999999887652 134567899999999999999999998764
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++++- ..-..+|.+.+.+.. ....|+||||+|.|.. ...+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HHHHHH
Confidence 2344443321 123456666665532 3457999999998743 246788
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+.+|++|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+++.++. .+..+..|++.+.| +
T Consensus 139 LKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888854 3456677777778888888886 885 89999999999999998888776554 33446778877655 5
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 213 LRdALnLLDQaI 224 (702)
T PRK14960 213 LRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 130
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.3e-13 Score=154.63 Aligned_cols=185 Identities=22% Similarity=0.288 Sum_probs=131.9
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeE-------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 543 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~------------- 543 (807)
..+|++|+|++++++.|+..+... +.+..+||+||||||||++|+++|+.+.+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 457999999999999988776521 2345579999999999999999999986531
Q ss_pred -----------EEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 544 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 544 -----------i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
+.+++.+ ...-..+|.+.+.+. .....|+||||+|.|. ...++.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1111110 011234565555443 2345799999999983 3468899
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+.+|++|+.++.|.+.+++ |+ .++.|.+++.++....++..+...++. .+..+..|++.+.| +
T Consensus 140 LKtLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 3456666678888888889887 88 589999999999999998888665443 33446778877765 4
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.++|..+.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 677777776655
No 131
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.48 E-value=5.3e-13 Score=153.46 Aligned_cols=168 Identities=21% Similarity=0.340 Sum_probs=112.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEeccchhhcc----------c------C-CchHHHHHHHHH
Q 003623 517 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------F------G-ESEANVREIFDK 569 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~----------~~~~i~v~~~~l~~~~----------v------g-~se~~i~~lf~~ 569 (807)
.++|+|+||||||++++.+..++ .+.++.|+|..+...+ . | .+...+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 35799999999999999998775 2567889985433211 0 1 123456667765
Q ss_pred HH--hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC---CCCCCccccCCCCCc
Q 003623 570 AR--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLD 644 (807)
Q Consensus 570 a~--~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~---~~~ld~allrpgRf~ 644 (807)
.. .....||+|||||.|... ...++-.|+.... ....+++|||++|. ++.|+|.+.+ ||.
T Consensus 863 L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg 927 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLA 927 (1164)
T ss_pred hhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccc
Confidence 52 234579999999999753 1344544444433 23457999999986 5677888876 776
Q ss_pred c-eeecCCCCHHHHHHHHHHHhccC-CCCCcccHHHHHHHcccCChhhHH---HHHHHHHH
Q 003623 645 Q-LIYIPLPDEESRLQIFKACLRKS-PVSKDVDLRALAKYTQGFSGADIT---EICQRACK 700 (807)
Q Consensus 645 ~-~i~~~~p~~~~r~~Il~~~l~~~-~~~~~~~~~~la~~~~g~sg~di~---~l~~~A~~ 700 (807)
. .|.|++|+.+++.+||+..+... .+-.+.-++.+|+.....+| |++ .+|+.|+.
T Consensus 928 ~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgE 987 (1164)
T PTZ00112 928 FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFE 987 (1164)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHh
Confidence 3 48889999999999999988754 23344446777776554443 444 35555554
No 132
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.5e-13 Score=151.72 Aligned_cols=164 Identities=24% Similarity=0.379 Sum_probs=128.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech------hhh--
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~-- 279 (807)
+|--|+++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|+.++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56789999999999999864332 235677899999999999999999999999999776642 332
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-------------cCCeE
Q 003623 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 345 (807)
..|+|....++-+.++....+.| +++|||+|.+.......+. +.|+.++|.-+ .-.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccccccchhhe
Confidence 25778888888888888888888 8899999999843332222 45666655321 23479
Q ss_pred EEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh
Q 003623 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~ 389 (807)
++|+|.|..+.|+++|+. |+ ..|+++=...++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 77 568898889999999988775
No 133
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.47 E-value=1.1e-12 Score=132.47 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=135.4
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccch
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 551 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l 551 (807)
...+.++++.|++..|+.|.+.....+. | .+..++||+|+.|||||+++|++.++. +..+|.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 4467899999999999999877653322 2 467789999999999999999999876 567888877665
Q ss_pred hhcccCCchHHHHHHHHHHHh-CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--CCCcEEEeecCC
Q 003623 552 LTMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATN 628 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~~~~v~vi~aTn 628 (807)
. .+-.+++..+. ..+-|||+|++.. . ..+.-...|-..|||-. ...+|+|.+|+|
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e-----------~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLSF--E-----------EGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCCC--C-----------CCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 3 24455555443 2456999999653 1 11233577788888853 456899999999
Q ss_pred CCCCCCccc----------cC-----------CCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHH----HHHHH
Q 003623 629 RPDIIDPAL----------LR-----------PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLR----ALAKY 682 (807)
Q Consensus 629 ~~~~ld~al----------lr-----------pgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~----~la~~ 682 (807)
|.+.+..-+ +. ..||...|.|.+|+.++-.+|++.++++.++..+ .++. ..|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 976553311 11 2499999999999999999999999988776644 2222 23333
Q ss_pred cccCChhhHHHHHH
Q 003623 683 TQGFSGADITEICQ 696 (807)
Q Consensus 683 ~~g~sg~di~~l~~ 696 (807)
-.|.||+--.+.+.
T Consensus 230 rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 230 RGGRSGRTARQFID 243 (249)
T ss_pred cCCCCHHHHHHHHH
Confidence 45667765555443
No 134
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=6.1e-13 Score=149.70 Aligned_cols=205 Identities=12% Similarity=0.198 Sum_probs=128.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcC
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~ 591 (807)
..+++||||+|+|||+|++++++++ +..++.+...++...+.......-...|..... .+.+|+||||+.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3569999999999999999999876 577888888776554332211111123444333 45799999999985431
Q ss_pred CCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC---CCCccccCCCCCc--ceeecCCCCHHHHHHHHHHHhc
Q 003623 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 666 (807)
Q Consensus 592 ~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 666 (807)
. ....|+..++.+....+.+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|..|++..++
T Consensus 219 --------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 --------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred --------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1 1233333333332233455665555554 56788887 996 8899999999999999999998
Q ss_pred cCCCCCccc-HHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHh
Q 003623 667 KSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMK 745 (807)
Q Consensus 667 ~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~ 745 (807)
..++.-+.+ ++.|+....+ +.++|.+.+...+.......+. ..+++.+.+++++.
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~-----------------------~~~i~~~~~~~~l~ 341 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS-----------------------HQLLYVDDIKALLH 341 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh-----------------------CCCCCHHHHHHHHH
Confidence 776543333 4556665442 4456665555543222111111 12577777777776
Q ss_pred hc---CC--CCCHHHHHH
Q 003623 746 YA---RR--SVSDADIRK 758 (807)
Q Consensus 746 ~~---~~--s~s~~~~~~ 758 (807)
.+ .+ .+|.+.|..
T Consensus 342 ~~~~~~~~~~~t~~~I~~ 359 (445)
T PRK12422 342 DVLEAAESVRLTPSKIIR 359 (445)
T ss_pred HhhhcccCCCCCHHHHHH
Confidence 54 22 467766653
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=4.5e-13 Score=151.21 Aligned_cols=171 Identities=19% Similarity=0.289 Sum_probs=114.1
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCc-hHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~s-e~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
.+++||||||||||+|++++++++ +..++.+++.++...+.... ...+.. |.......+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999985 35778888888766543211 112222 33333335789999999998643
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC---CCccccCCCCCc--ceeecCCCCHHHHHHHHHHH
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (807)
. ....+|+..++.+....+.+||++.+.|.. +++.+.+ ||. ..+.+.+||.+.|..|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 122334444444433445666766666764 4567776 775 67889999999999999999
Q ss_pred hccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHH
Q 003623 665 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 665 l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a 702 (807)
+...++. ++.-+..||+...+ +.++|..++......+
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 8765443 23336677776653 5677777777654444
No 136
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.7e-12 Score=150.19 Aligned_cols=185 Identities=22% Similarity=0.325 Sum_probs=133.5
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|+|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 35799999999999988877653 1 234558999999999999999999988652
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++..- ..-..+|.+.+.+. .....|+||||+|.|.. ...|.|
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------------~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------------HHHHHH
Confidence 233333210 11234555555443 33457999999999743 357899
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 687 (807)
|..|+.- ...+.+|++|+.++.|.+.+++ |+ ..++|.+++.++....++..++..++.. +..+..|++.++| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4466777778888899899988 97 6999999999999999998886655443 3446678877765 5
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.++..+++..|.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 667667776554
No 137
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=9.1e-13 Score=149.50 Aligned_cols=189 Identities=21% Similarity=0.291 Sum_probs=139.5
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe-------------
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------------- 542 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~------------- 542 (807)
...+|+++.|++.+.+.|...+.. -..+.++||+||||||||++|+++|+.+.+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 345789999999999988776542 1345679999999999999999999988642
Q ss_pred ---------------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHH
Q 003623 543 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 543 ---------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
++.+++. -..+...++.+.+.+... ...|+||||+|.+.. .
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~ 143 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------G 143 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------H
Confidence 1111111 012345678888777543 346999999998732 3
Q ss_pred HHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHH
Q 003623 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~ 682 (807)
.++.||..|+. ....+++|++|+.++.+.+++.+ |+ ..++|.+++.++...+++..+++.++.- +..+..|++.
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47788888884 34466777777888889999987 88 4899999999999999999998766543 3446778887
Q ss_pred cccCChhhHHHHHHHHHHHH
Q 003623 683 TQGFSGADITEICQRACKYA 702 (807)
Q Consensus 683 ~~g~sg~di~~l~~~A~~~a 702 (807)
++| +.+++.+++..+...+
T Consensus 219 s~G-slR~al~~Ldkai~~~ 237 (507)
T PRK06645 219 SEG-SARDAVSILDQAASMS 237 (507)
T ss_pred cCC-CHHHHHHHHHHHHHhh
Confidence 765 6788888787776544
No 138
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=1.1e-12 Score=149.69 Aligned_cols=171 Identities=15% Similarity=0.300 Sum_probs=115.7
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhc
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r 590 (807)
..++|||++|||||+|++++++++ +..++++++.++.+.++.........-|.+-.. .+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999986 467889999888876654332222234544333 35899999999986531
Q ss_pred CCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC-C---CCCCccccCCCCCc--ceeecCCCCHHHHHHHHHHH
Q 003623 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-P---DIIDPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~-~---~~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (807)
.. ...|+..++.+...++-+|| |+|+ | ..+++.|.+ ||. .++.+.+||.+.|.+||+..
T Consensus 394 ---------~t---qeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 394 ---------ST---QEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred ---------HH---HHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 11 23334444443333344555 5555 4 357788887 885 67799999999999999999
Q ss_pred hccCCCCCccc-HHHHHHHcccCChhhHHHHHHHHHHHHH
Q 003623 665 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 665 l~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~A~~~a~ 703 (807)
+....+.-+.+ ++.|++...+ +-++|..++......+.
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 98776654333 5667766542 56777777766554443
No 139
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.2e-12 Score=142.35 Aligned_cols=164 Identities=25% Similarity=0.358 Sum_probs=128.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec------hhhh--
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING------PEIM-- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~------~~l~-- 279 (807)
.|--|+++.+++|.+++....+.+ --.+.-++|+||||+|||+|++.||+.++..|+.++- +++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 467899999999999998643322 1345669999999999999999999999999988764 2332
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-------------cCCeE
Q 003623 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------------~~~~v 345 (807)
..|.|....++-+-+..+....| ++++||||.+...-...+. +.|+..+|.-+ .-.+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 36778888888888888888888 8899999999876544433 34555554211 22589
Q ss_pred EEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh
Q 003623 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~ 389 (807)
+||+|.|..+.|+.+|+. |. ..|++.-.+..+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999987 77 668999999999999998774
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.4e-12 Score=149.58 Aligned_cols=182 Identities=19% Similarity=0.276 Sum_probs=126.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|.|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 45799999999999999887653 1 234579999999999999999999988642
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++..- ..-..++.+.+.+ ......|+||||+|.|.. ..++.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------------~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR--------------EAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH--------------HHHHHH
Confidence 333433210 0112334433322 233457999999999742 346888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|++||.++.+.+.+++ |+. ++.|++++.++...+++..+.+..+. ++..+..|++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888853 3467777888888888888887 885 78999999999999998888766543 34446677776643 2
Q ss_pred hhhHHHHHH
Q 003623 688 GADITEICQ 696 (807)
Q Consensus 688 g~di~~l~~ 696 (807)
.+++.+++.
T Consensus 214 lR~Al~lLe 222 (624)
T PRK14959 214 VRDSMSLLG 222 (624)
T ss_pred HHHHHHHHH
Confidence 334444443
No 141
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.42 E-value=2.9e-12 Score=140.97 Aligned_cols=190 Identities=22% Similarity=0.328 Sum_probs=123.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC-----CeEEEEeccch
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 551 (807)
...|+++.|.+.+++.|...+.. ....+++|+||||||||++|+++++++. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 34688999999999988876642 1123699999999999999999999873 35677887765
Q ss_pred hhcc-------------cCC-------chHHHHHHHHHHHh-----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHH
Q 003623 552 LTMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 552 ~~~~-------------vg~-------se~~i~~lf~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
...+ .+. ....++.+.+.... ..+.+||+||+|.+.. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~ 143 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQ 143 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHH
Confidence 4221 111 01223333322222 2346999999998732 1234
Q ss_pred HHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHccc
Q 003623 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g 685 (807)
.|+..|+..... .. +|.+|+.+..+.+.+.+ |+ ..+.+++|+.++...+++..+++.++. ++..+..|++.+
T Consensus 144 ~L~~~le~~~~~-~~-~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-- 216 (337)
T PRK12402 144 ALRRIMEQYSRT-CR-FIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-- 216 (337)
T ss_pred HHHHHHHhccCC-Ce-EEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--
Confidence 555566644322 33 44455556667777776 77 478999999999999999988776554 344466666654
Q ss_pred CChhhHHHHHHHHHHHH
Q 003623 686 FSGADITEICQRACKYA 702 (807)
Q Consensus 686 ~sg~di~~l~~~A~~~a 702 (807)
+.+++.++......+
T Consensus 217 --~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 217 --GGDLRKAILTLQTAA 231 (337)
T ss_pred --CCCHHHHHHHHHHHH
Confidence 556776665554433
No 142
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2e-12 Score=147.73 Aligned_cols=186 Identities=19% Similarity=0.248 Sum_probs=133.9
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++++|++++++.|...+.. -..+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 45789999999999999887753 1334568999999999999999999987542
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ...-..+|.+.+.+.. ....|+||||+|.|.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------HSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------HHHHHH
Confidence 44444331 1223446666665432 3347999999999843 347889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+... ..+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998643 346666677778888888887 88 478899999988888888888766554 33446777777764 6
Q ss_pred hhhHHHHHHHHHH
Q 003623 688 GADITEICQRACK 700 (807)
Q Consensus 688 g~di~~l~~~A~~ 700 (807)
.+++.+++..+..
T Consensus 214 lR~al~lLdq~ia 226 (509)
T PRK14958 214 VRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777766643
No 143
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.9e-12 Score=146.44 Aligned_cols=187 Identities=20% Similarity=0.298 Sum_probs=136.1
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|+|++++++.|...+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 45799999999999999887653 1345679999999999999999999987542
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++... +.+...++.+++.+.. ....|+||||+|.|. ...++.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 12222111 1223467777776533 334799999998863 2357889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+... ..+.+|++||.+..+.+.+++ || ..+.|++++.++....++..+++.++. ++..+..|++.+.| +
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 99998643 456677777888888888876 88 478888999999999999998877654 33446778877754 6
Q ss_pred hhhHHHHHHHHHHH
Q 003623 688 GADITEICQRACKY 701 (807)
Q Consensus 688 g~di~~l~~~A~~~ 701 (807)
.+++.+++..+...
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777666543
No 144
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=99.41 E-value=1e-12 Score=113.85 Aligned_cols=80 Identities=39% Similarity=0.586 Sum_probs=66.6
Q ss_pred eEEEecccCC---CCcEEEECHHHHHhcCCCCCCEEEEeeCCCceEEEEEEcCCCC--CCCeEEEcHHHHhhcccCCCCe
Q 003623 30 RLVVDEAIND---DNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTC--EEPKIRMNKVVRSNLRVRLGDV 104 (807)
Q Consensus 30 ~~~v~~~~~~---~~~~v~l~~~~~~~l~~~~g~~v~i~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ 104 (807)
+|+|.++..+ ++++|+|||+.|++||+..||+|.|.|. + .++|.||+.... ++|+|+|+..+|+|+|+++||.
T Consensus 1 ~L~V~~~p~~~~~~~n~v~v~~~~m~~l~l~~gd~v~i~g~-~-~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~ 78 (87)
T PF02359_consen 1 RLRVAEAPSDEDAGTNCVRVSPEDMEELGLFPGDVVLISGK-R-KTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDR 78 (87)
T ss_dssp EEEEEE-SSSHHHCTTEEEEEHHHHHCTTT-TTEEEEEETT-T-EEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSE
T ss_pred CcEEEeCCChHhCCCCEEEEcHHHHHHcCCCCccEEEEeCC-c-eEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCE
Confidence 5889988743 8999999999999999999999999994 3 488999986544 7899999999999999999999
Q ss_pred EEEEEcc
Q 003623 105 VSVHQCA 111 (807)
Q Consensus 105 v~v~~~~ 111 (807)
|+|+++.
T Consensus 79 V~V~~~~ 85 (87)
T PF02359_consen 79 VTVRPYD 85 (87)
T ss_dssp EEEEEET
T ss_pred EEEEECC
Confidence 9999975
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3.9e-12 Score=147.36 Aligned_cols=186 Identities=26% Similarity=0.366 Sum_probs=136.5
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
+.+|+++.|++++.+.|...+.. -..+..+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45799999999999999887653 134556899999999999999999998642
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
+++.++++. +.+-..++.+.+.+.. ....|+||||+|.|.. ..++.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHH
Confidence 334443321 2234567777777653 2357999999998732 357888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|.+|+.++.|.+.+++ |+. .+.|++|+.++...+++..+++.++.- +..+..+++.+.| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988854 3456666677788999999987 886 788999999999999999887766543 3446777877765 5
Q ss_pred hhhHHHHHHHHHH
Q 003623 688 GADITEICQRACK 700 (807)
Q Consensus 688 g~di~~l~~~A~~ 700 (807)
.++..+++..+..
T Consensus 214 ~R~al~~Ldq~~~ 226 (559)
T PRK05563 214 MRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 146
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3e-12 Score=152.90 Aligned_cols=185 Identities=20% Similarity=0.243 Sum_probs=128.7
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|+|++.+++.|...+.. -+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 45799999999999998887652 1334558999999999999999999998541
Q ss_pred ------------EEEEeccchhhcccCCchHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHH
Q 003623 543 ------------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 543 ------------~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
++.+++... ..-..+|++-+.+ ......|+||||+|.|.. ...|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------QGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------------HHHH
Confidence 222322111 0123344443332 334567999999999843 3578
Q ss_pred HHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHccc
Q 003623 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g 685 (807)
.||+.|+... ..+++|++|+.++.|-+.+.+ |+. ++.|..++.++...+++..+++.++.-+ ..+..|++.+.|
T Consensus 139 aLLK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999998653 356677777888888888887 885 8899999999999999988877665433 335666666544
Q ss_pred CChhhHHHHHHHHH
Q 003623 686 FSGADITEICQRAC 699 (807)
Q Consensus 686 ~sg~di~~l~~~A~ 699 (807)
+-+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 4455555554433
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.41 E-value=8e-12 Score=127.91 Aligned_cols=181 Identities=22% Similarity=0.265 Sum_probs=124.4
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC------eEEEEecc
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGP 549 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~------~~i~v~~~ 549 (807)
...+++++.|++.+.+.|+..+.. ....++|||||||||||+.|+++|.++.. .....+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 456789999999999999887652 23456999999999999999999999865 23344555
Q ss_pred chhhcccCCchHHHHHHHHHHHhC----------CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCC
Q 003623 550 ELLTMWFGESEANVREIFDKARQS----------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 619 (807)
Q Consensus 550 ~l~~~~vg~se~~i~~lf~~a~~~----------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~ 619 (807)
+..+.-++. .+ -+-|.+.... ++.|++|||.|.|.. ...+.|...|+.. ..
T Consensus 98 derGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts--------------daq~aLrr~mE~~--s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS--------------DAQAALRRTMEDF--SR 158 (346)
T ss_pred ccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhH--------------HHHHHHHHHHhcc--cc
Confidence 443332211 11 1123332221 237999999999853 3567788888864 44
Q ss_pred cEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHcccCChhhHHHHH
Q 003623 620 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEIC 695 (807)
Q Consensus 620 ~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~~~g~sg~di~~l~ 695 (807)
.+.+|..||.++.|.+-+.+ |+. .+.|++...+.....|+....+.++.-+. .+..+++.+ +.|++...
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S----~GdLR~Ai 228 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKIS----DGDLRRAI 228 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHH
Confidence 57778889999999998987 998 66777777767777777777776665333 356666654 45666543
No 148
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.2e-12 Score=142.94 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=138.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC----------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------------- 540 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~---------------- 540 (807)
..+|+|++|++.+.+.|...+.. + +.+.++||+||+|+|||++|+.+|+.+.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 45799999999999988876542 1 3456799999999999999999998653
Q ss_pred --------CeEEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 541 --------ANFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 541 --------~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
..++.+++++- .+-..+|.+.+.+... ...|++|||+|.|.. ..++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHH
Confidence 23455554321 1235577777776543 346999999998732 357889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+... ..+.+|.+|+.++.|.+.+++ |+. .+.|.+++.++....++..+++.++. ++..+..|++.++| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 456677777888888899887 885 79999999999999999888776654 34456778877764 6
Q ss_pred hhhHHHHHHHHHHH
Q 003623 688 GADITEICQRACKY 701 (807)
Q Consensus 688 g~di~~l~~~A~~~ 701 (807)
.+++.+++..+...
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777766544
No 149
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.39 E-value=3.3e-12 Score=150.89 Aligned_cols=181 Identities=25% Similarity=0.387 Sum_probs=119.6
Q ss_pred Ccccccccchhhhhh---hhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh
Q 003623 477 NVNWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~ 553 (807)
..+++++.|.+++.. .|...+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356788889888763 34444331 223469999999999999999999999999988876421
Q ss_pred cccCCchHHHHHHHHHHH-----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCC
Q 003623 554 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (807)
Q Consensus 554 ~~vg~se~~i~~lf~~a~-----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn 628 (807)
..+.++.+++.+. .....++||||||.+... ..+.|+..++ ...+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecC
Confidence 1223444444432 124579999999997432 2345665554 24566776654
Q ss_pred C--CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhc-------cCCCC-CcccHHHHHHHcccCChhhHHHHHHHH
Q 003623 629 R--PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLR-------KSPVS-KDVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 629 ~--~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~-------~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 698 (807)
. ...+++++++ |+ ..+.|++++.+++..|++..+. ...+. ++..+..|++.+.| +.+++.++++.|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3 3568899998 76 4799999999999999998886 22222 23335667766532 345555555554
Q ss_pred H
Q 003623 699 C 699 (807)
Q Consensus 699 ~ 699 (807)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 4
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.39 E-value=2.7e-11 Score=142.03 Aligned_cols=222 Identities=25% Similarity=0.368 Sum_probs=136.5
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v 546 (807)
..+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45788999999887776554432 224569999999999999999998765 3578999
Q ss_pred eccchh-------hcccCCchHHH----HHHHHH----------HHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHH
Q 003623 547 KGPELL-------TMWFGESEANV----REIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (807)
Q Consensus 547 ~~~~l~-------~~~vg~se~~i----~~lf~~----------a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~ 605 (807)
++..+. ..++|...... +..+.. .......+||+||++.|-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 887642 11222211110 111110 0112235999999988743 234
Q ss_pred HHHHHHHcCCC--------------------------CCCcEEEee-cCCCCCCCCccccCCCCCcceeecCCCCHHHHH
Q 003623 606 NQLLTEMDGMS--------------------------AKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRL 658 (807)
Q Consensus 606 ~~lL~~ld~~~--------------------------~~~~v~vi~-aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 658 (807)
..|+..|+.-. ....+++|+ ||+.++.+++++.+ ||. .++|++++.+++.
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 45555553210 112355555 55668899999887 997 6789999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccH
Q 003623 659 QIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKA 737 (807)
Q Consensus 659 ~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 737 (807)
.|++..+.+..+. .+.-+..|++.+ +.|+..-+++..+...++.+..... .......|+.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~-----------------~~~~~~~I~~ 420 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG-----------------KENDKVTITQ 420 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc-----------------cCCCCeeECH
Confidence 9999998876543 223344555544 3565555555565544443321000 0011246899
Q ss_pred HHHHHHHhhc
Q 003623 738 VHFEESMKYA 747 (807)
Q Consensus 738 ~~f~~al~~~ 747 (807)
+|+++++..-
T Consensus 421 edv~~~l~~~ 430 (615)
T TIGR02903 421 DDVYEVIQIS 430 (615)
T ss_pred HHHHHHhCCC
Confidence 9999998754
No 151
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.9e-12 Score=142.16 Aligned_cols=184 Identities=23% Similarity=0.352 Sum_probs=130.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
...|+++.|++++++.|...+... ..+..+||+||||||||++|+++|+.+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 457999999999999998876531 23445799999999999999999998743
Q ss_pred --------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHH
Q 003623 542 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 542 --------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
.++.+++.+ ..+-..++.+.+.+.. ..+.|+||||+|.+. ...++.||
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 133333321 1123446666554433 346799999998762 34578888
Q ss_pred HHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCCh
Q 003623 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 688 (807)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg 688 (807)
..|+.. ...+++|.+||.++.+.+.+.+ |+. .+.|++|+.++....++..+++.++. ++..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888854 3456777778888999999987 886 89999999999999999988776654 33446677776654 34
Q ss_pred hhHHHHHHHH
Q 003623 689 ADITEICQRA 698 (807)
Q Consensus 689 ~di~~l~~~A 698 (807)
+++.++++.+
T Consensus 212 R~aln~Lekl 221 (504)
T PRK14963 212 RDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH
Confidence 4444555444
No 152
>PRK06893 DNA replication initiation factor; Validated
Probab=99.39 E-value=2.9e-12 Score=132.50 Aligned_cols=159 Identities=13% Similarity=0.185 Sum_probs=100.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++||||||||||+|++++|++. +.+...+...+. ......+++..+ ...+|+||||+.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 233333333221 111123344333 34699999999986431
Q ss_pred CCCCCCccHHHHHHHHHHHHcCCCCCC-cEEEeecCCCCCCCC---ccccCCCCCcceeecCCCCHHHHHHHHHHHhccC
Q 003623 593 SVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 668 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~-~v~vi~aTn~~~~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 668 (807)
.... .|+..++.....+ .++|++++..|..++ |.+.+..++...+.+++|+.++|.+|++..+...
T Consensus 108 -------~~~~---~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 108 -------EWEL---AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred -------HHHH---HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHc
Confidence 1122 2334344333333 455666666676554 7888744556889999999999999999888655
Q ss_pred CCCC-cccHHHHHHHcccCChhhHHHHHHH
Q 003623 669 PVSK-DVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 669 ~~~~-~~~~~~la~~~~g~sg~di~~l~~~ 697 (807)
.+.- +.-+..|++...| +.+.+.+++..
T Consensus 178 ~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 178 GIELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 5543 3346677776653 44555555554
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=4.6e-12 Score=131.06 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=107.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhc
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 590 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r 590 (807)
.+.+++|+||+|||||++|+++++.+ +.+++.+++.++.... ..+++.... ..+|+|||+|.+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~ 106 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh
Confidence 45679999999999999999999886 4678888887775321 233333322 3599999999874320
Q ss_pred CCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCC---ccccCCCCC--cceeecCCCCHHHHHHHHHHHh
Q 003623 591 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEESRLQIFKACL 665 (807)
Q Consensus 591 ~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld---~allrpgRf--~~~i~~~~p~~~~r~~Il~~~l 665 (807)
. ....+...++.....+..+|+.++..+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++
T Consensus 107 ---------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~ 172 (226)
T TIGR03420 107 ---------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRA 172 (226)
T ss_pred ---------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHH
Confidence 0 1223333333322222345555554554432 66665 66 4789999999999999999887
Q ss_pred ccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHHHHHHH
Q 003623 666 RKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 666 ~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~ 704 (807)
.+.++. .+.-+..|++. -+-+.+++.++++.+...+..
T Consensus 173 ~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 173 ARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 655443 33345667764 334678888888886654444
No 154
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.9e-12 Score=145.08 Aligned_cols=186 Identities=22% Similarity=0.297 Sum_probs=130.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|.|++++++.|...+.. + ..+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45799999999999999887653 1 334458999999999999999999987531
Q ss_pred ------------EEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHH
Q 003623 543 ------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 543 ------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
++.++++.. .+-..++++-+.+. .....|+||||+|.|-. ...+
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------------~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------------AGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------------HHHH
Confidence 222322211 01234555444432 23456999999998732 3578
Q ss_pred HHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHccc
Q 003623 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g 685 (807)
.||..|+.. ...+++|++|+.++.|.+.+.+ |+ ..+.|.+++.++..+.++..+++.++.- +..+..+++.+.|
T Consensus 137 ALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999853 3467777777888899999987 86 4899999999999999988887766543 3345566665543
Q ss_pred CChhhHHHHHHHHHH
Q 003623 686 FSGADITEICQRACK 700 (807)
Q Consensus 686 ~sg~di~~l~~~A~~ 700 (807)
+.+++.+++..+..
T Consensus 212 -dlR~aln~Ldql~~ 225 (584)
T PRK14952 212 -SPRDTLSVLDQLLA 225 (584)
T ss_pred -CHHHHHHHHHHHHh
Confidence 55666666665543
No 155
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.1e-11 Score=141.44 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=131.1
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
+..|+++.|++.+++.|...+.. -..+.++||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45689999999999988877642 133467999999999999999999998742
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.++++.. -+-..+|.+.+.+... ...|++|||+|.|-. ...+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHH
Confidence 2233332210 1233467776655443 236999999998732 246788
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|++|+.++.|.+++++ |+. .+.|++|+.++....++..+.+.++. ++..+..+++.+.| +
T Consensus 140 LKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 9988854 3456777777888999999988 886 89999999999999999888765542 33446677777654 4
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 lR~AlnlLekL~ 225 (605)
T PRK05896 214 LRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 156
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.5e-11 Score=136.87 Aligned_cols=177 Identities=20% Similarity=0.238 Sum_probs=123.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|+++.|++..+..|+.++... ..+..+||+||+||||||+|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 456778999999999999998887642 123469999999999999999999998753
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+ ......|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222211 01122344444433 234557999999998842 245667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++. ....+++|.+|+.++.|.+.+++ |+ ..+.+..++..+-.+.++..+....+. ++..+..++..+.|-.
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 777765 33578888888889999999998 66 457788888777777777665543332 4455788888888753
No 157
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=6.2e-12 Score=145.35 Aligned_cols=185 Identities=19% Similarity=0.302 Sum_probs=131.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++++|++++.+.|...+... ..+..+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 357899999999999998876531 334568999999999999999999987641
Q ss_pred ---------------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHH
Q 003623 543 ---------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADR 603 (807)
Q Consensus 543 ---------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~ 603 (807)
++.+++.+ ...-..+|++.+.+... ...|++|||+|.|.. .
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------------~ 139 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------------T 139 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------------H
Confidence 22222211 11223567776665432 246999999999743 2
Q ss_pred HHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHH
Q 003623 604 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKY 682 (807)
Q Consensus 604 v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~ 682 (807)
..|.||..|+.. ...+.+|.+|+.++.+.+.+++ |+ ..++|..++.++....++..+.+.++.- +..+..|++.
T Consensus 140 a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 478888888853 3456666677778888888887 88 5899999999999999988887666543 3346777877
Q ss_pred cccCChhhHHHHHHHHH
Q 003623 683 TQGFSGADITEICQRAC 699 (807)
Q Consensus 683 ~~g~sg~di~~l~~~A~ 699 (807)
+.| +.+++.+++..+.
T Consensus 215 s~G-slR~al~lLdq~i 230 (618)
T PRK14951 215 ARG-SMRDALSLTDQAI 230 (618)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 665 5666666665444
No 158
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.37 E-value=5e-12 Score=137.78 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=108.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhccc
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 556 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~v 556 (807)
+.+++++.|.+++++.+...+.. + ..+..+||+||||+|||++|++++++.+.+++.+++++ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 45689999999999988877642 1 23445777999999999999999999998999888876 11 1
Q ss_pred CCchHHHHHHHHHH-HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCc
Q 003623 557 GESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 635 (807)
Q Consensus 557 g~se~~i~~lf~~a-~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~ 635 (807)
......+....... ....+.++||||+|.+... ...+.|...|+... .++.+|++||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------------HHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 11111122211111 1135689999999987221 12233444455433 35677889999999999
Q ss_pred cccCCCCCcceeecCCCCHHHHHHHHHHHh
Q 003623 636 ALLRPGRLDQLIYIPLPDEESRLQIFKACL 665 (807)
Q Consensus 636 allrpgRf~~~i~~~~p~~~~r~~Il~~~l 665 (807)
++.+ ||. .+.|+.|+.+++..+++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9998 996 78999999999988876544
No 159
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.8e-11 Score=135.59 Aligned_cols=187 Identities=24% Similarity=0.365 Sum_probs=132.2
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC--------------
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------------- 541 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~-------------- 541 (807)
....|+++.|.+.+++.|...+.. + ..+..+|||||||+|||++|+++|..+..
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 346799999999999998877642 1 23456899999999999999999988642
Q ss_pred ----------eEEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHH
Q 003623 542 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++.+ ..+...++.+++.+... ...|+++||+|.+.. ...+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~ 136 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNA 136 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHH
Confidence 233333321 12234577788776543 236999999998732 34678
Q ss_pred HHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccC
Q 003623 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 686 (807)
||..|+.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++...+++..+++.++.- +..+..+++.+.|
T Consensus 137 Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 3456677778888888888887 885 789999999999999999887766542 3445666766544
Q ss_pred ChhhHHHHHHHHHH
Q 003623 687 SGADITEICQRACK 700 (807)
Q Consensus 687 sg~di~~l~~~A~~ 700 (807)
+.+.+.+.+..+..
T Consensus 211 ~~~~a~~~lekl~~ 224 (355)
T TIGR02397 211 SLRDALSLLDQLIS 224 (355)
T ss_pred ChHHHHHHHHHHHh
Confidence 45555555554443
No 160
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=4.8e-12 Score=142.99 Aligned_cols=173 Identities=16% Similarity=0.259 Sum_probs=115.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCch---HHHHHHHHHHHhCCCeEEEEcccchh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE---ANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se---~~i~~lf~~a~~~~p~ilfiDEid~l 586 (807)
..+++|||++|||||+|++++++++ +..++.+.+.++...+..... ..+..+.+.. ..+.+|+||||+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3469999999999999999999964 467888998888766543221 1222222222 24569999999988
Q ss_pred hhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC---CCCccccCCCCCc--ceeecCCCCHHHHHHHH
Q 003623 587 ATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIF 661 (807)
Q Consensus 587 ~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il 661 (807)
.++ ......|...++.+...++.+|+.+...|+ .+++.+.+ ||. ..+.+.+|+.++|.+|+
T Consensus 219 ~~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 542 123344444444443444445555444554 45778887 885 77788899999999999
Q ss_pred HHHhccCCC---CCcccHHHHHHHcccCChhhHHHHHHHHHHHHHH
Q 003623 662 KACLRKSPV---SKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 662 ~~~l~~~~~---~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~ 704 (807)
+..++..++ -++.-+..|++...| +.+.+..+|..+...+..
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 999976543 233446677776654 678888888877655443
No 161
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.1e-11 Score=141.95 Aligned_cols=191 Identities=23% Similarity=0.330 Sum_probs=133.4
Q ss_pred CCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEE---e-----
Q 003623 476 PNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---K----- 547 (807)
Q Consensus 476 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v---~----- 547 (807)
.+..|+++.|++.+.+.|...+... ..+..+||+||+|+|||++|+++|..+.+.--.. .
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3457999999999999988877531 3455689999999999999999999875421000 0
Q ss_pred -----ccchhhcccC---CchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC
Q 003623 548 -----GPELLTMWFG---ESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (807)
Q Consensus 548 -----~~~l~~~~vg---~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~ 615 (807)
..+++. .-+ .+...+|.+.+.+... ...|++|||+|.|.. ...+.||..|+..
T Consensus 81 ~~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEEP 145 (725)
T PRK07133 81 ENVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEEP 145 (725)
T ss_pred HhhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhcC
Confidence 011110 001 1244577877776543 347999999998742 3578899999864
Q ss_pred CCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcccCChhhHHHH
Q 003623 616 SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEI 694 (807)
Q Consensus 616 ~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~sg~di~~l 694 (807)
...+++|++|+.++.|.+.+++ |+. .+.|.+|+.++...+++..+.+.++.-+ ..+..+|+.+.| +.+++..+
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Alsl 219 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSI 219 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3466777777889999999988 996 8999999999999999888776655432 336677776654 44555555
Q ss_pred HHHHH
Q 003623 695 CQRAC 699 (807)
Q Consensus 695 ~~~A~ 699 (807)
+..+.
T Consensus 220 Lekl~ 224 (725)
T PRK07133 220 AEQVS 224 (725)
T ss_pred HHHHH
Confidence 55443
No 162
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.36 E-value=2.3e-11 Score=126.38 Aligned_cols=206 Identities=21% Similarity=0.393 Sum_probs=127.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCe---EEEEeccchhhcccCCchHHHHHHHHHHHhC-----CCeEEEEcccchhh
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 587 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~~---~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~-----~p~ilfiDEid~l~ 587 (807)
.+++|+||||||||+||+.|+.....+ |+.++... ..-+.+|.+|+.+... ...|||||||+++.
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 469999999999999999999988655 77776532 3356789999888652 35899999999975
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecC--CCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHh
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 665 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aT--n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 665 (807)
... ...||-.. +...+++|+|| |.--.|..||++ |+- ++.+.....++...||..-+
T Consensus 236 ksQ--------------QD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KSQ--------------QDTFLPHV----ENGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhh--------------hhccccee----ccCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 421 12333332 35568888877 334578999998 885 66667777888888887633
Q ss_pred c---c--C---CCCC------cccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccc
Q 003623 666 R---K--S---PVSK------DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDE 731 (807)
Q Consensus 666 ~---~--~---~~~~------~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (807)
. + . ++.. +--++.++..++|-.-+.|..+--.+.+...+.. + ..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g------------~----------~~ 352 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSG------------Q----------SS 352 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcC------------C----------cc
Confidence 2 1 1 1211 2235667766666433333322222222222211 0 11
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccC
Q 003623 732 VAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 771 (807)
Q Consensus 732 ~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~~~~~ 771 (807)
...++.+|+.++|+.-.---...--+.|.-+..-++.=||
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG 392 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRG 392 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcC
Confidence 3468888999988765433333344556655555554444
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-11 Score=135.44 Aligned_cols=179 Identities=27% Similarity=0.407 Sum_probs=123.2
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCCe-----EEEEeccchhhcc---------------cCCc-hHHHHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGES-EANVREIFDKAR 571 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~~-----~i~v~~~~l~~~~---------------vg~s-e~~i~~lf~~a~ 571 (807)
..|.++++|||||||||.+++.++.++... +++|+|..+-+.| .|.+ .+....+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 344569999999999999999999997543 8999986654322 1222 223334444433
Q ss_pred h-CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC---CCCCccccCCCCCc-ce
Q 003623 572 Q-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLD-QL 646 (807)
Q Consensus 572 ~-~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~---~~ld~allrpgRf~-~~ 646 (807)
. ...-|+++||+|.|....+ .++-.|+...+.. ..++.+|+.+|.. +.+||.+.+ ||. ..
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~ 184 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSE 184 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcce
Confidence 3 4567999999999987521 4566666555544 5678999999986 478888876 544 56
Q ss_pred eecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHcccCCh--hhHHHHHHHHHHHHHHHH
Q 003623 647 IYIPLPDEESRLQIFKACLRKS---PVSKDVDLRALAKYTQGFSG--ADITEICQRACKYAIREN 706 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~l~~~---~~~~~~~~~~la~~~~g~sg--~di~~l~~~A~~~a~~~~ 706 (807)
|.||+++.+|...|++...+.. +..++.-++.+|......+| +---.+|+.|+..|.++.
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999888653 23333345555555443343 233358999999998765
No 164
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=1.1e-11 Score=134.96 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=121.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC-----CeEEEEeccch
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 551 (807)
+.+++++.|.+++.+.|+..+.. ....++||+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 34688999999988888776442 1123599999999999999999999972 24566666554
Q ss_pred hhcccCCchHHHHHHHHHH-H------hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEe
Q 003623 552 LTMWFGESEANVREIFDKA-R------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a-~------~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 624 (807)
.+ -..++...... . ...+.|++|||+|.+... ..+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcccC--CceEE
Confidence 22 11233332211 1 123579999999998532 24556666664332 33456
Q ss_pred ecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHH
Q 003623 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 625 ~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A 698 (807)
.+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++. .+..+..+++.+ +.|++.+++..
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~----~gDlR~aln~L 201 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTA----DGDMRQALNNL 201 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Confidence 677888888889887 884 89999999999999999888766543 334466666554 45666655544
No 165
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=9.1e-12 Score=143.36 Aligned_cols=186 Identities=23% Similarity=0.310 Sum_probs=131.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|+++.|++++++.|...+.. -..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 35799999999999998877653 1334568999999999999999999988542
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ...-..++.+.+.+... ...|+||||+|.+.. ...|.|
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------------~a~naL 139 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------------SAFNAM 139 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------------HHHHHH
Confidence 22222211 11234577777766432 346999999998732 357889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|++|+.++.+.+.+++ |+ ..++|.+++.++....++..+++.++.. +..+..+++.+.| +
T Consensus 140 LK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999863 3456666677778888777776 88 5999999999999888888876655543 3345677777654 5
Q ss_pred hhhHHHHHHHHHH
Q 003623 688 GADITEICQRACK 700 (807)
Q Consensus 688 g~di~~l~~~A~~ 700 (807)
.+++.+++..|..
T Consensus 214 lr~al~lldqai~ 226 (527)
T PRK14969 214 MRDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777766544
No 166
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.5e-11 Score=137.34 Aligned_cols=176 Identities=19% Similarity=0.251 Sum_probs=121.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+-+|+++.|+++.++.|+.++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 456778999999999988888877642 23456999999999999999999999864
Q ss_pred ------------cEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++..- ..-..++.+.+.+.. ....++||||+|.+.. .....|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 2344443210 112344555544432 2346999999998842 223556
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCCC
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (807)
+..++... ..+++|++|+.+..+.+++++ |+ ..+.+..++..+...+++..+....+ .++..+..++..+.|-
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGG 211 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 66666532 356666677777889999988 66 57899999999998888876644332 2334577788877653
No 167
>PRK04195 replication factor C large subunit; Provisional
Probab=99.36 E-value=2.2e-11 Score=139.94 Aligned_cols=182 Identities=29% Similarity=0.387 Sum_probs=127.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
+++.+.+++++.|.++.+++|++++..-.. -.+++++||+|||||||||+|+++|++++..++.+++++..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 355677899999999999999998864211 12367899999999999999999999999999999987643
Q ss_pred hhhhchhHHHHHHHHHHHHh------cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 280 SKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 280 ~~~~g~~~~~i~~if~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
.. ..++.+...+.. ..+.+|+|||+|.+..+.. ......|+..++. .+..+|.++|.
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccC
Confidence 21 223333332222 2467999999999865321 1223456666652 23345557888
Q ss_pred CCCCCH-HHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 354 PNSIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 354 ~~~ld~-al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
+..+.+ .+++ ....+.++.|+..+...+++..+....+. ++..+..++..+.|-
T Consensus 140 ~~~~~~k~Lrs---r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 140 PYDPSLRELRN---ACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred ccccchhhHhc---cceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 887776 6664 34679999999999999998877544332 344578888877653
No 168
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.9e-11 Score=134.46 Aligned_cols=191 Identities=19% Similarity=0.292 Sum_probs=128.7
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccch-----
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL----- 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l----- 551 (807)
+.+|++++|.+.+.+.+...+.. + ..+.++|||||||+|||++|+++|+.+..+.....+.++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 45799999999999888877653 1 345679999999999999999999987542111000000
Q ss_pred -hhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeec
Q 003623 552 -LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 626 (807)
Q Consensus 552 -~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~a 626 (807)
++.........++.+++.+... .+.|+|+||+|.+.. ..++.|+..|+.. ....++|++
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCceEEEEE
Confidence 0011112235677788766432 347999999998743 2467788888753 234455556
Q ss_pred CCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHHHHH
Q 003623 627 TNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 627 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 699 (807)
|+.+..+.+++.+ |+. .+.|++|+.++...++...+.+.++. ++..+..+++.+.| +.+.+.+.++...
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 7777888889887 775 78999999999999998888776653 34556777776543 4444444444443
No 169
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=9e-12 Score=142.27 Aligned_cols=185 Identities=20% Similarity=0.272 Sum_probs=126.5
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|+++.|++.+++.|...+... ..+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 357899999999999888776531 33455899999999999999999998753
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++..- . .-..++.+.+.+.. ....|+||||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2333332111 1 12345555554432 345799999999873 2357889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 LK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 3445556666667878778877 88 599999999999988888887766544 33345666766643 4
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 170
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.6e-11 Score=139.64 Aligned_cols=179 Identities=15% Similarity=0.227 Sum_probs=125.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++..-+|++|.|+++.++.|+.++... ..+..+||+||+||||||+++.+|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456778999999999999999887641 224468999999999999999999998652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.++..+ ...-..++.+++.+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22222211 111234555555443 23456999999998842 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..|+... .++.||.+||.+..|.+.+++ |+ ..+.|..+..++-.+.|+..+....+. ++..+..|++.+.|-.
T Consensus 140 LKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 140 LKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77777543 367778888889999999888 66 678888888888888887766543332 3455778888888764
Q ss_pred hh
Q 003623 412 GA 413 (807)
Q Consensus 412 ~~ 413 (807)
..
T Consensus 215 Rd 216 (830)
T PRK07003 215 RD 216 (830)
T ss_pred HH
Confidence 43
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.35 E-value=1.9e-11 Score=146.19 Aligned_cols=227 Identities=20% Similarity=0.283 Sum_probs=145.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh--------
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~-------- 279 (807)
.+..|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45899999999998888742211 113456799999999999999999999999998877653321
Q ss_pred -hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcc-----c--------cCCeE
Q 003623 280 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 345 (807)
Q Consensus 280 -~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~--------~~~~v 345 (807)
..+.|.....+...+..+....| +++|||+|.+.+..... ....|+..+|.- . .-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13444444455555555443444 89999999997653221 234566666531 1 22678
Q ss_pred EEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC-----CCCC------CchhHHHHHHh-hCCCchh
Q 003623 346 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-----MKLS------DDVDLERIAKD-THGYVGA 413 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~-----~~l~------~~~~l~~la~~-t~g~~~~ 413 (807)
++|+|+|.. .|+++|+. |+ ..|.+..++.++..+|.+.++.. ..+. .+.-+..++.. +..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999887 59999998 88 46899999999999998877631 1111 12224445432 3344456
Q ss_pred hHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhccC
Q 003623 414 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTS 463 (807)
Q Consensus 414 dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~ 463 (807)
.+...+.......+.+.... .......++.+++...+...
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~----------~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLD----------KSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------CCCceeeecHHHHHHHhCCC
Confidence 66666655444443332100 01123556677777666543
No 172
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.1e-11 Score=140.65 Aligned_cols=184 Identities=22% Similarity=0.320 Sum_probs=132.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|++|+|++++++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 45799999999999999887653 1 345568999999999999999999987532
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ..+-..++.+.+.+... ...|+||||+|.|.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~--------------~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST--------------NAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH--------------HHHHHH
Confidence 33333322 11234577777666433 236999999998743 347889
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+.. ...+++|.+||.++.|.+.+++ |+. .+.|..++.++....+...+++.++. ++..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4467777788888999999987 885 89999999999888888888776654 34446677777654 4
Q ss_pred hhhHHHHHHHH
Q 003623 688 GADITEICQRA 698 (807)
Q Consensus 688 g~di~~l~~~A 698 (807)
-+++.+++..+
T Consensus 214 lr~al~~Ldql 224 (576)
T PRK14965 214 MRDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 173
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2e-11 Score=138.91 Aligned_cols=185 Identities=16% Similarity=0.241 Sum_probs=126.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++...+|++|.|+++.++.|++++... ..+..+||+||+|+||||+++.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456778999999999999999888642 224568999999999999999999998751
Q ss_pred ------------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHH
Q 003623 270 ------------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERR 327 (807)
Q Consensus 270 ------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 327 (807)
++.+++.. ...-..++.+.+.. ......|+||||+|.+.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 12222211 01123455555443 234457999999998842 2
Q ss_pred HHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHh
Q 003623 328 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 406 (807)
Q Consensus 328 v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~ 406 (807)
..+.|++.|+.. ..++.||.+|+.++.|.+.+++ |+ ..+.|..++.++..+.|+..+....+. ++..+..++..
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346677777753 3467778888889999999988 65 667888898888888777655433332 23346777888
Q ss_pred hCCCchhhHHHHHH
Q 003623 407 THGYVGADLAALCT 420 (807)
Q Consensus 407 t~g~~~~dl~~l~~ 420 (807)
+.|-.. +...++.
T Consensus 215 A~Gs~R-dALsLLd 227 (700)
T PRK12323 215 AQGSMR-DALSLTD 227 (700)
T ss_pred cCCCHH-HHHHHHH
Confidence 777543 3344443
No 174
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4.1e-11 Score=132.57 Aligned_cols=185 Identities=21% Similarity=0.308 Sum_probs=125.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------------
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------------- 270 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------------- 270 (807)
.|++|+|++..++.|++++..+..++ ..++...+..+||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 47899999999999999998755432 223334567899999999999999999999875421
Q ss_pred --------EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc
Q 003623 271 --------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 271 --------i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
..+... +. .-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..++.
T Consensus 80 ~~~~hpD~~~i~~~---~~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPE---GL--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 111110 00 1122346777766543 33469999999998432 23667888875
Q ss_pred cccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCchhhHHHH
Q 003623 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAAL 418 (807)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l 418 (807)
... ..++|+ +|+.++.+.|.+++ |+ ..+.++.|+.++..+.|.... .+. ......++..++|..+..+.-+
T Consensus 144 p~~-~~~fIL-~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 PPP-RTVWLL-CAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCC-CCeEEE-EECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 432 334444 45558899999998 66 689999999998877775322 222 3446678888999877655443
No 175
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=1e-11 Score=131.12 Aligned_cols=132 Identities=25% Similarity=0.351 Sum_probs=94.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEecc------chhhcccCCchHHH---------------------HHHH
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANV---------------------REIF 567 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~------~l~~~~vg~se~~i---------------------~~lf 567 (807)
...+||+||||||||++|+++|..++.+|+.+++. ++++.|.|.....+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45699999999999999999999999999998764 44444443222211 1122
Q ss_pred HHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------------CCCcEEEeecCCCCC--
Q 003623 568 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD-- 631 (807)
Q Consensus 568 ~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------------~~~~v~vi~aTn~~~-- 631 (807)
..+.. ..++++|||+.+-+ .+.+.|+..|+.-. ....+.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~~--------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSKP--------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCCH--------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 35999999998532 35666666665421 123567999999763
Q ss_pred ---CCCccccCCCCCcceeecCCCCHHHHHHHHHHHh
Q 003623 632 ---IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACL 665 (807)
Q Consensus 632 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 665 (807)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 589999999999999998875
No 176
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.33 E-value=4.7e-11 Score=134.53 Aligned_cols=171 Identities=29% Similarity=0.460 Sum_probs=118.9
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 003623 201 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
++.+-+++++.|.++.+.. |++++.. ....+++|+|||||||||+|+++++.++..++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 3455678999999998766 7777653 22348999999999999999999999999999888753
Q ss_pred hhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC-
Q 003623 278 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 352 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn- 352 (807)
. ....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2 1233445555443 235689999999987421 22345555542 4566666543
Q ss_pred -CCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCC-----CCCCchhHHHHHHhhCCC
Q 003623 353 -RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM-----KLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 353 -~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~-----~l~~~~~l~~la~~t~g~ 410 (807)
....+++++++ |+ ..+.+..++.++...+++..+... .+ .+..+..++..+.|-
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd 189 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD 189 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC
Confidence 34578999998 76 678999999999998888765431 22 233466777776553
No 177
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.32 E-value=2.8e-11 Score=125.65 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC---CeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++||||+|||||+|+++++++.. .....+...+... ....+.+.... ..+++||||+.+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4699999999999999999998764 3344444433211 11122222222 2589999999985421
Q ss_pred CCCCCCccHHHHHHHHHHHHcCCCCCCc-EEEeecCCCCCC---CCccccCCCCCc--ceeecCCCCHHHHHHHHHHHhc
Q 003623 593 SVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 666 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~~-v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 666 (807)
.....+-.+++.+ ...++ -+++.+++.|.. +.|.+.+ |+. .++.+.+|+.+++.+|++....
T Consensus 114 -------~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1122232333322 22333 455656666654 5788887 886 7999999999999999998666
Q ss_pred cCCCCC-cccHHHHHHHcccCChhhHHHHHHHH
Q 003623 667 KSPVSK-DVDLRALAKYTQGFSGADITEICQRA 698 (807)
Q Consensus 667 ~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A 698 (807)
..++.- +.-++.|++..+| +.+.+.+++...
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 554443 3346677777654 556666666653
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=5.3e-11 Score=134.61 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=126.1
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|++++|++.+++.|...+.. -..+..+|||||||+|||++|+++|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46799999999999988887653 134566999999999999999999998643
Q ss_pred ----------eEEEEeccchhhcccCCchHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHH
Q 003623 542 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++... . +-..++.+-+.. ......|+||||+|.+.. ...+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHH
Confidence 2333433211 0 112344333322 224568999999998742 24678
Q ss_pred HHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccC
Q 003623 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 686 (807)
||..|+.. ...+++|++||.++.|.+++.+ |+. .++|++++.++....++..+++.++. ++..+..|+..+.|
T Consensus 141 LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 89998864 3366677777888899999987 886 79999999999999998888766543 33446677776643
Q ss_pred ChhhHHHHHH
Q 003623 687 SGADITEICQ 696 (807)
Q Consensus 687 sg~di~~l~~ 696 (807)
+-+++.+.+.
T Consensus 215 dlr~a~~~Le 224 (451)
T PRK06305 215 SLRDAESLYD 224 (451)
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 179
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=2.6e-11 Score=125.52 Aligned_cols=176 Identities=12% Similarity=0.179 Sum_probs=112.1
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
....+++|+||+|||||+||++++++. +.+++.+++.++... +.. .....+++|||+|.+...
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA 105 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch
Confidence 345679999999999999999999875 557777777664321 111 223569999999986321
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcE-EEeecCCCCC--CCCccccCCCCC--cceeecCCCCHHHHHHHHHHH
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNRPD--IIDPALLRPGRL--DQLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v-~vi~aTn~~~--~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~ 664 (807)
. ...|+..++........ ++++++..|. .+.+.+.+ || ...+.+|+|+.+++..+++..
T Consensus 106 -----------~---~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 106 -----------Q---QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred -----------H---HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHH
Confidence 1 23334444433333343 4444443332 34566665 77 479999999999999999887
Q ss_pred hccCCCCCc-ccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHH
Q 003623 665 LRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEES 743 (807)
Q Consensus 665 l~~~~~~~~-~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~a 743 (807)
.....+.-+ .-+..|++...| +.+++.++++.....|... ...||...+.++
T Consensus 170 ~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~--------------------------~~~i~~~~~~~~ 222 (227)
T PRK08903 170 AAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ--------------------------KRPVTLPLLREM 222 (227)
T ss_pred HHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh--------------------------CCCCCHHHHHHH
Confidence 766554433 345666664432 5677777777644333322 136888888887
Q ss_pred Hh
Q 003623 744 MK 745 (807)
Q Consensus 744 l~ 745 (807)
|.
T Consensus 223 l~ 224 (227)
T PRK08903 223 LA 224 (227)
T ss_pred Hh
Confidence 75
No 180
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=1.9e-10 Score=128.08 Aligned_cols=200 Identities=23% Similarity=0.313 Sum_probs=124.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEechhh
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 278 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~l 278 (807)
+++.|.++++++|..++.-.+.. ..+.+++|+||||||||++++.++..+. ..+++++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46999999999998887532211 3356799999999999999999988753 45778887542
Q ss_pred h----------hhhh--c--------hhHHHHHHHHHHHH-hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhh
Q 003623 279 M----------SKLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (807)
Q Consensus 279 ~----------~~~~--g--------~~~~~i~~if~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (807)
. .... + .....+..+++... ...+.+|+|||+|.+.... ..++.+|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 1 1110 0 11223344444443 2456799999999997321 123344444421
Q ss_pred cc-ccCCeEEEEEecCCCC---CCCHHHHccCCcc-eEEEeCCCChhHHHHHHHHHhcC-C--CCCCchhHH---HHHHh
Q 003623 338 GL-KSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLE---RIAKD 406 (807)
Q Consensus 338 ~~-~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~i~~P~~~~R~~Il~~~~~~-~--~l~~~~~l~---~la~~ 406 (807)
.. ....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..+. .++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 1235788888998875 57777776 564 67899999999999999987652 1 111222233 33444
Q ss_pred hCCCchhhHHHHHHHHHHHHH
Q 003623 407 THGYVGADLAALCTEAALQCI 427 (807)
Q Consensus 407 t~g~~~~dl~~l~~~a~~~~~ 427 (807)
+.|.... ...+|..|...+.
T Consensus 236 ~~Gd~R~-al~~l~~a~~~a~ 255 (365)
T TIGR02928 236 EHGDARK-AIDLLRVAGEIAE 255 (365)
T ss_pred hcCCHHH-HHHHHHHHHHHHH
Confidence 4555333 3445666655444
No 181
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.31 E-value=4.5e-11 Score=138.09 Aligned_cols=216 Identities=24% Similarity=0.361 Sum_probs=135.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcE
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 270 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~ 270 (807)
+..+.+|+++.|.+..++.++..+.. ..+.++||+||||||||++|+++.... +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 45567899999999999998866432 235689999999999999999997642 3578
Q ss_pred EEEechhh-------hhhhhchhHHHH---HHHHH----------HHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 271 FCINGPEI-------MSKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 271 i~v~~~~l-------~~~~~g~~~~~i---~~if~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
+.++|... .....+.....+ ...|. ........+|||||++.+.+. ..+
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q~ 193 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QMN 193 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HHH
Confidence 88887531 111111000000 00000 011223469999999988532 223
Q ss_pred HHHHHhhccc--------------------------cCCe-EEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 331 QLLTLMDGLK--------------------------SRAH-VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 331 ~Ll~~ld~~~--------------------------~~~~-v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
.|+..++.-. .... .++++|++.++.+++++++ |+ .++.++.++.++..+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 3444442200 0112 3445667789999999998 76 568899999999999
Q ss_pred HHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhccccccccchhhHHhhhccccchhHHhhhhcc
Q 003623 384 VLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGT 462 (807)
Q Consensus 384 Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~ 462 (807)
|++..+++..+. ++..++.++..+. .++++..+++.|+..+..+. ...++.+|+..++..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~-----------------~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG-----------------RKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC-----------------CcEEcHHHHHHHhCC
Confidence 999887765433 2334555555443 67888888888776543321 123666777776653
No 182
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.7e-11 Score=136.66 Aligned_cols=185 Identities=22% Similarity=0.320 Sum_probs=127.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
+.+|+++.|++.+.+.|...+.. -..+..+|||||+|+|||++|+.+|..+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45789999999999998887653 1334558999999999999999999987531
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.++++. ...-..++.+.+.+.. ....|+||||+|.+.. ...+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHH
Confidence 12221110 0112345666555543 3457999999998732 246788
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 687 (807)
|..|+... ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..++..++.- +..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 345555566678888888887 886 799999999999999999888776543 3346667766553 3
Q ss_pred hhhHHHHHHHHH
Q 003623 688 GADITEICQRAC 699 (807)
Q Consensus 688 g~di~~l~~~A~ 699 (807)
.+++.+++..+.
T Consensus 214 lr~al~~Ldkl~ 225 (486)
T PRK14953 214 MRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 183
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.29 E-value=1.8e-11 Score=133.09 Aligned_cols=175 Identities=29% Similarity=0.456 Sum_probs=122.7
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhhc-hh
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 286 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~~~~l~-i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~~ 286 (807)
|.|+++.++.+..++...++...+...+. -.++++|||+||||||||+++++||+.++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999999777765433332222111 224689999999999999999999999999999998876642 4555 44
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 003623 287 ESNLRKAFEEA--------------------------------------------------------------------- 297 (807)
Q Consensus 287 ~~~i~~if~~a--------------------------------------------------------------------- 297 (807)
+..++.+|+.+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 44444444443
Q ss_pred ----------------------------------------------------------------------HhcCCeEEEE
Q 003623 298 ----------------------------------------------------------------------EKNAPSIIFI 307 (807)
Q Consensus 298 ----------------------------------------------------------------------~~~~p~il~i 307 (807)
...+-.|+||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123469999
Q ss_pred ccchhhcCCcCCCchhH-HHHHHHHHHHHhhccc--------cCCeEEEEEec----CCCCCCCHHHHccCCcceEEEeC
Q 003623 308 DEIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 308 DEid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~Rf~~~i~i~ 374 (807)
||||.++........++ ..-|.+.||.+++|-. ...++++|++- ..|.++=|.|. |||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 99999997653222222 2346677888887632 23577888643 34566777776 5999999999
Q ss_pred CCChhHHHHHHH
Q 003623 375 VPDEVGRLEVLR 386 (807)
Q Consensus 375 ~P~~~~R~~Il~ 386 (807)
.++.++-..||.
T Consensus 332 ~L~~edL~rILt 343 (441)
T TIGR00390 332 ALTTDDFERILT 343 (441)
T ss_pred CCCHHHHHHHhc
Confidence 999999999984
No 184
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=4.8e-11 Score=123.76 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=107.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcC
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 591 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~ 591 (807)
...++|+||+|||||+|++++++++ +...+.++..++... ...+.+..+.. .+++|||++.+.+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3568999999999999999999764 467777887776542 12333333333 589999999875431
Q ss_pred CCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC---CCccccCCCCCc--ceeecCCCCHHHHHHHHHHHhc
Q 003623 592 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLR 666 (807)
Q Consensus 592 ~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 666 (807)
.....|+..++.....++.+|++++..|.. +.|.+.+ ||. ..+.+.+|+.++|..|++....
T Consensus 114 -----------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 114 -----------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -----------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 123445555555555566778877776643 3688887 885 6777899999999999996665
Q ss_pred cCCCC-CcccHHHHHHHcccCChhhHHHHHHHHH
Q 003623 667 KSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 667 ~~~~~-~~~~~~~la~~~~g~sg~di~~l~~~A~ 699 (807)
..++. ++.-++.|++..++ +.+.+..++....
T Consensus 181 ~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 213 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGTR-SMSALFDLLERLD 213 (234)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 54443 23445667766543 5566666665443
No 185
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=2.1e-10 Score=129.11 Aligned_cols=202 Identities=23% Similarity=0.296 Sum_probs=126.0
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhh---
Q 003623 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEI--- 278 (807)
Q Consensus 207 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l--- 278 (807)
.+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.+++.+ +..+++++|...
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 355889999999998887532211 235679999999999999999999876 456788887532
Q ss_pred -------hhhhhc--------hhHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccC
Q 003623 279 -------MSKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR 342 (807)
Q Consensus 279 -------~~~~~g--------~~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~ 342 (807)
.....+ .....+..+.+.... ..+.+|+|||+|.+..... ...+..|+.+++... .
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~ 171 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-G 171 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-C
Confidence 111111 112233333333332 3568999999999972211 123455555554433 2
Q ss_pred CeEEEEEecCCCC---CCCHHHHccCCc-ceEEEeCCCChhHHHHHHHHHhcCC---CCCCchhHHHHHHhhCCCch--h
Q 003623 343 AHVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYVG--A 413 (807)
Q Consensus 343 ~~v~vI~atn~~~---~ld~al~r~~Rf-~~~i~i~~P~~~~R~~Il~~~~~~~---~l~~~~~l~~la~~t~g~~~--~ 413 (807)
.++.+|+++|..+ .+++.+++ || ...+.+++++.++..+|++.+++.. ...++..++.++..+.+..| +
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 3677888887654 46777766 44 3578999999999999998776431 12234446667776643222 2
Q ss_pred hHHHHHHHHHHHHH
Q 003623 414 DLAALCTEAALQCI 427 (807)
Q Consensus 414 dl~~l~~~a~~~~~ 427 (807)
....+|..|...+.
T Consensus 250 ~a~~ll~~a~~~a~ 263 (394)
T PRK00411 250 VAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 33355555554443
No 186
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.28 E-value=1.1e-10 Score=121.46 Aligned_cols=182 Identities=26% Similarity=0.415 Sum_probs=118.9
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEe
Q 003623 201 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCIN 274 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~---l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~ 274 (807)
.+.+-+++|.+|+++.+.+ |+.+++. ..-..++|+||||||||+||+.|+.....+ |+.++
T Consensus 131 rmRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred hcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 4455678888888876644 4444443 233479999999999999999999987665 66665
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh-----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEE
Q 003623 275 GPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 349 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~i~~if~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~ 349 (807)
+.. ...+.+|.+|+.+.. ....|||||||+.+-...+ ..++- .-..+.|++||
T Consensus 198 At~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP----~VE~G~I~lIG 255 (554)
T KOG2028|consen 198 ATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLP----HVENGDITLIG 255 (554)
T ss_pred ccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccc----eeccCceEEEe
Confidence 432 234568888988865 3568999999998754322 11222 12356788887
Q ss_pred ecC-CC-CCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhc----------CCCC----CCchhHHHHHHhhCCCchh
Q 003623 350 ATN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 350 atn-~~-~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~~ 413 (807)
+|. .| -.+..+|.+ |+ +.+.+.....+....||..-.. .++. .++.-++.++..+.|-...
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 664 44 467888887 44 4466777777777777764221 1222 1233477888888887666
Q ss_pred hHHHHHH
Q 003623 414 DLAALCT 420 (807)
Q Consensus 414 dl~~l~~ 420 (807)
.|..|--
T Consensus 333 aLN~Lem 339 (554)
T KOG2028|consen 333 ALNALEM 339 (554)
T ss_pred HHHHHHH
Confidence 6655433
No 187
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=5.7e-11 Score=123.19 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=96.2
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 592 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~ 592 (807)
..++|+||+|||||+|+.++++++ +...+.+...++. ..+..+++.... ..+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~~--~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALEG--RSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHhc--CCEEEEeCcccccCCh--
Confidence 449999999999999999998775 4444555544332 233445555443 3599999999886431
Q ss_pred CCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC---CccccCCCCC--cceeecCCCCHHHHHHHHHHHhcc
Q 003623 593 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEESRLQIFKACLRK 667 (807)
Q Consensus 593 ~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf--~~~i~~~~p~~~~r~~Il~~~l~~ 667 (807)
.....+-.+++.+ ...+.-+|+.+.+.|..+ +|++.+ || ...+.+++|+.+++.+|++.....
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1112222343333 222223444455566644 789987 86 468899999999999999987755
Q ss_pred CCCC-CcccHHHHHHHcccCChhhHHHH
Q 003623 668 SPVS-KDVDLRALAKYTQGFSGADITEI 694 (807)
Q Consensus 668 ~~~~-~~~~~~~la~~~~g~sg~di~~l 694 (807)
.++. ++..+..|++.+. +|++.+
T Consensus 178 ~~l~l~~e~~~~La~~~~----rd~r~~ 201 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGE----RELAGL 201 (233)
T ss_pred cCCCCCHHHHHHHHHhCC----CCHHHH
Confidence 4443 3344667777654 455544
No 188
>PLN03025 replication factor C subunit; Provisional
Probab=99.28 E-value=1.2e-10 Score=126.94 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=117.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEe
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~ 274 (807)
+++.+-+++++.|.++.++.|+.++... ...++||+||||||||++|+++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 3566778999999999999988876531 224799999999999999999999973 2356666
Q ss_pred chhhhhhhhchhHHHHHHHHHHHH-------hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEE
Q 003623 275 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~i~~if~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (807)
+++..+. ..++..+.... .....+++|||+|.+... ....|+..++..... ..+
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~~--t~~ 132 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSNT--TRF 132 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccCC--ceE
Confidence 6543211 12333222211 123579999999988432 124456666544332 345
Q ss_pred EEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 348 I~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
|.+||....+.+++++ |+ ..+.+..|+.++....++..++...+. ++..+..++..+.|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577888888889987 55 468999999999988888766543322 33457777777665
No 189
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=3.5e-11 Score=138.94 Aligned_cols=182 Identities=21% Similarity=0.304 Sum_probs=126.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
+.+|++|.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 45799999999999998887652 1 334569999999999999999999987542
Q ss_pred ----------EEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 543 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 543 ----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
++.+++.. ..+-..++.+.+.+. .....|++|||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naL 139 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNAL 139 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 011234555554432 3445799999999873 2357888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+. ....+++|++|+.++.|.+++.+ |+. .+.|.+++.++..++++..++..++. ++..+..|++.+.| +
T Consensus 140 LK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 888885 33456777777778889899887 887 78999999999999998887665543 33445566666554 4
Q ss_pred hhhHHHHHH
Q 003623 688 GADITEICQ 696 (807)
Q Consensus 688 g~di~~l~~ 696 (807)
.+++.+++.
T Consensus 214 lR~alslLd 222 (563)
T PRK06647 214 VRDAYTLFD 222 (563)
T ss_pred HHHHHHHHH
Confidence 444444443
No 190
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.27 E-value=2.2e-10 Score=127.44 Aligned_cols=218 Identities=27% Similarity=0.331 Sum_probs=134.8
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhh--hCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhhch
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 285 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~~~~--l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~ 285 (807)
|.|++..++.|...+..+++.-..... -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999987666432211100000 011 24578999999999999999999999999999999887653 45564
Q ss_pred h-HHHHHHHHHH----HHhcCCeEEEEccchhhcCCcCCCc---hhHHHHHHHHHHHHhhccc-----------cCCeEE
Q 003623 286 S-ESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK-----------SRAHVI 346 (807)
Q Consensus 286 ~-~~~i~~if~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~-----------~~~~v~ 346 (807)
. +..+..+++. .....++||||||||.+.+...... +-....+...|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 3 3334444443 2335678999999999987632211 1111246678888887531 011344
Q ss_pred EEEecCCCC----------------------------------------------------CCCHHHHccCCcceEEEeC
Q 003623 347 VIGATNRPN----------------------------------------------------SIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 347 vI~atn~~~----------------------------------------------------~ld~al~r~~Rf~~~i~i~ 374 (807)
+|.|+|... .+.|++ .+|++..+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf--lgRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF--IGRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH--hCCCCeeeecC
Confidence 555544410 012222 26999999999
Q ss_pred CCChhHHHHHHHH----Hhc---------CCCCC-CchhHHHHHHh--hCCCchhhHHHHHHHHHHHHHHh
Q 003623 375 VPDEVGRLEVLRI----HTK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 375 ~P~~~~R~~Il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
..+.+...+|+.. ..+ ++.+. ++.-+..+++. ...|-.+.|..++.......+.+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999988863 221 11111 23346667765 44566677777777666555543
No 191
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=2e-11 Score=132.69 Aligned_cols=175 Identities=29% Similarity=0.449 Sum_probs=123.4
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhhc-hh
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 286 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g-~~ 286 (807)
|.|+++.++.+..++...++...+...+.. ..+.++||+||||||||++|++||+.++.+|+.+++..+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999998777543322221111111 13578999999999999999999999999999999877764 4655 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003623 287 ESNLRKAFEEAE-------------------------------------------------------------------- 298 (807)
Q Consensus 287 ~~~i~~if~~a~-------------------------------------------------------------------- 298 (807)
+..++.+|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 455555555440
Q ss_pred ----------------------------------------------------------------------hcCCeEEEEc
Q 003623 299 ----------------------------------------------------------------------KNAPSIIFID 308 (807)
Q Consensus 299 ----------------------------------------------------------------------~~~p~il~iD 308 (807)
..+-.|+|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0134699999
Q ss_pred cchhhcCCcCCCchhH-HHHHHHHHHHHhhccc--------cCCeEEEEEec----CCCCCCCHHHHccCCcceEEEeCC
Q 003623 309 EIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 309 Eid~l~~~~~~~~~~~-~~~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~Rf~~~i~i~~ 375 (807)
|||.++...+....++ ..-|...||.+++|-. ...++++|++- ..|.++-|.|. |||...+++..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 9999997653222222 2346677888887622 23578888642 34566778887 49999999999
Q ss_pred CChhHHHHHHH
Q 003623 376 PDEVGRLEVLR 386 (807)
Q Consensus 376 P~~~~R~~Il~ 386 (807)
++.++-.+||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999999985
No 192
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.27 E-value=5.4e-11 Score=129.78 Aligned_cols=174 Identities=21% Similarity=0.334 Sum_probs=125.5
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
...++||||.|+|||+|++|++++. +..++.+...++.+.++-....+-..-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4459999999999999999999886 34678888888777666544344445666666 4469999999999764
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC---CccccCCCCCc--ceeecCCCCHHHHHHHHHHH
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (807)
.+...+|...++.+....+.+|+.+...|..+ +|.|.+ ||. .++.+.+||.+.|..|++..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 23355666666666656666777766667644 577877 887 67788899999999999998
Q ss_pred hccCCCCCccc-HHHHHHHcccCChhhHHHHHHHHHHHHHHH
Q 003623 665 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIRE 705 (807)
Q Consensus 665 l~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~A~~~a~~~ 705 (807)
....++.-+.+ +..+|+... -+.+++..++......|...
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFT 297 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhc
Confidence 87776654444 456666543 35677777777666665544
No 193
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.26 E-value=1e-10 Score=133.39 Aligned_cols=164 Identities=24% Similarity=0.397 Sum_probs=109.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCc
Q 003623 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~ 317 (807)
.+++||||||||||+|++++++++ +..++++++.++...+..........-|.... ..+.+|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 45688899888766554333221112232222 246799999999986432
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC---CCHHHHccCCcc--eEEEeCCCChhHHHHHHHHHhcCC
Q 003623 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNM 392 (807)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~i~~P~~~~R~~Il~~~~~~~ 392 (807)
. ....++..++.+......+++++...|.. +++.+++ ||. ..+++..|+.+.|..|++..+...
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 12344555554444445566666666654 6788887 664 578999999999999999887643
Q ss_pred --CCCCchhHHHHHHhhCCCchhhHHHHHH
Q 003623 393 --KLSDDVDLERIAKDTHGYVGADLAALCT 420 (807)
Q Consensus 393 --~l~~~~~l~~la~~t~g~~~~dl~~l~~ 420 (807)
.+++ ..++.++....|- .+.+...+.
T Consensus 297 ~~~l~~-e~l~~ia~~~~~~-~R~l~~~l~ 324 (450)
T PRK00149 297 GIDLPD-EVLEFIAKNITSN-VRELEGALN 324 (450)
T ss_pred CCCCCH-HHHHHHHcCcCCC-HHHHHHHHH
Confidence 3333 4478888887763 334443333
No 194
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=8.5e-11 Score=131.58 Aligned_cols=187 Identities=19% Similarity=0.269 Sum_probs=125.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|+++.|++.+++.|...+.. + ..+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 45789999999999988877652 1 345569999999999999999999988552
Q ss_pred ------------------EEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCcc
Q 003623 543 ------------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGA 600 (807)
Q Consensus 543 ------------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~ 600 (807)
++.+++.+. ..-..++.+.+.+.. ....|+||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222222110 113456665555422 2346999999998743
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC-CCcccHHHH
Q 003623 601 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRAL 679 (807)
Q Consensus 601 ~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~~~~l 679 (807)
...+.||..|+... ...++|.+|+.+..+-+++.+ |+. .+.|++++.++....++..++..++ .++..+..|
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23567788887432 344555555667777788876 775 8999999999988888888876554 234456677
Q ss_pred HHHcccCChhhHHHHHHHHHHH
Q 003623 680 AKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 680 a~~~~g~sg~di~~l~~~A~~~ 701 (807)
++.+.| +.+.+.+.+..+...
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 776654 344555555544333
No 195
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.26 E-value=1.7e-11 Score=130.27 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=99.5
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhc--ccCCchHH----------HHHHHHHHHhCCCeEEE
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVLF 579 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~--~vg~se~~----------i~~lf~~a~~~~p~ilf 579 (807)
+...+++||.||||||||++++.+|..++.+++.|++...+.. ++|...-. ....+-.|.. .+++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ill 139 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALC 139 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEE
Confidence 3456789999999999999999999999999999987665544 45542111 1112334433 357899
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHH-----HcC----CCCCCcEEEeecCCCCC------------CCCcccc
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDG----MSAKKTVFIIGATNRPD------------IIDPALL 638 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~-----ld~----~~~~~~v~vi~aTn~~~------------~ld~all 638 (807)
+||||..-+. ....++.+|.. +.+ +.....+.||||+|..+ .+++|++
T Consensus 140 lDEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 140 FDEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred echhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 9999986321 22334444432 111 11334688999999854 5688999
Q ss_pred CCCCCcceeecCCCCHHHHHHHHHHHhcc
Q 003623 639 RPGRLDQLIYIPLPDEESRLQIFKACLRK 667 (807)
Q Consensus 639 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 667 (807)
. ||-.++.++.|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99988999999999999999876543
No 196
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.3e-10 Score=134.40 Aligned_cols=191 Identities=18% Similarity=0.248 Sum_probs=125.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------E
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------C 272 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------~ 272 (807)
++.+.+|++|.|.++.++.|+.++... ..+..+||+|||||||||+|+++|+.+++... .
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456779999999999999998887641 12345799999999999999999999876310 0
Q ss_pred Eechhhhhh-------hhc---hhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc
Q 003623 273 INGPEIMSK-------LAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~~~-------~~g---~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
-.|..+... +.+ ..-..+|.+.+... .....|+||||+|.+. ....+.|+..|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHhc
Confidence 001111100 000 11233455544332 2345699999999884 2345677888876
Q ss_pred cccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHH
Q 003623 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 417 (807)
.. ..+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..++..+.|-.+ ++..
T Consensus 146 PP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALn 219 (944)
T PRK14949 146 PP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALS 219 (944)
T ss_pred cC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHH
Confidence 43 356666678888889888887 65 668899999888888887665432222 33457778888887543 3444
Q ss_pred HHH
Q 003623 418 LCT 420 (807)
Q Consensus 418 l~~ 420 (807)
++.
T Consensus 220 LLd 222 (944)
T PRK14949 220 LTD 222 (944)
T ss_pred HHH
Confidence 443
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.26 E-value=1.9e-10 Score=119.70 Aligned_cols=98 Identities=23% Similarity=0.186 Sum_probs=72.7
Q ss_pred EEeecCCC------------CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCCh
Q 003623 622 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSG 688 (807)
Q Consensus 622 ~vi~aTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~sg 688 (807)
+||.|||| |+-|+..|+. |+- +|...|++.++.++|++...+...+.. +..++.|+.....-|=
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 77888887 5566667776 663 778889999999999999998776553 3447778877665566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 689 ADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 689 ~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
+.--+++.-|...|.+++ ...|..+|++.|..-+
T Consensus 399 RYa~qLL~pa~iiA~~rg-------------------------~~~V~~~dVe~a~~lF 432 (450)
T COG1224 399 RYAVQLLTPASIIAKRRG-------------------------SKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHhccHHHHHHHHhC-------------------------CCeeehhHHHHHHHHH
Confidence 666677777777777764 2368888999886644
No 198
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.8e-10 Score=127.45 Aligned_cols=185 Identities=21% Similarity=0.268 Sum_probs=123.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|+++.++.++..+... ..+..+||+||||+||||+|+++|+.+.+.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999998887641 124468999999999999999999998632
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.... ....+++|||+|.+.. ...+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHH
Confidence 11122110 0122345555554432 2345999999998732 223456
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++++|+.++..+++...++.... .++..+..++..+.|-
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~- 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS- 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77776533 345556667777888888887 66 57899999999999988876655433 2344567778777763
Q ss_pred hhhHHHHHH
Q 003623 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.+++..++.
T Consensus 214 ~R~al~~l~ 222 (363)
T PRK14961 214 MRDALNLLE 222 (363)
T ss_pred HHHHHHHHH
Confidence 333434433
No 199
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.4e-10 Score=131.83 Aligned_cols=188 Identities=22% Similarity=0.310 Sum_probs=132.7
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|+++.|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 45799999999999999887652 1 34455799999999999999999988632
Q ss_pred ---------eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 542 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 542 ---------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.++.+++.+- ..-..++.+.+.... ....|++|||+|.+. ....+.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1222222110 012456666554332 223699999998873 3457888
Q ss_pred HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCC
Q 003623 609 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFS 687 (807)
Q Consensus 609 L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 687 (807)
|..|+... ..+.+|.+|+.+..|.+++.+ |+. .++|.+++.++....++..+++.++. .+..+..+++.+.| +
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998653 345556666778999999988 875 89999999999888888888766544 34456777777665 6
Q ss_pred hhhHHHHHHHHHHHH
Q 003623 688 GADITEICQRACKYA 702 (807)
Q Consensus 688 g~di~~l~~~A~~~a 702 (807)
.+++.+++..|...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777666544
No 200
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=3.4e-10 Score=117.03 Aligned_cols=185 Identities=18% Similarity=0.291 Sum_probs=114.6
Q ss_pred Ccccc--cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 003623 206 GYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (807)
Q Consensus 206 ~~~di--~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (807)
+|++. ++.+..++.+++++.. ..+.+++|+||+|||||++|++++..+ +..++++++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 44443 4566777777776531 346789999999999999999999876 46688888877754
Q ss_pred hhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC--
Q 003623 281 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 358 (807)
Q Consensus 281 ~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld-- 358 (807)
.. ..+++.. ....+|+|||++.+..... ....|..+++........+|++++..+..++
T Consensus 80 ~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 80 AD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred hH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 32 1222222 2346999999998754310 1233444444433333344444444444332
Q ss_pred -HHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHHHH
Q 003623 359 -PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 423 (807)
Q Consensus 359 -~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (807)
+.+.+...+...+.++.|+.+++..+++.......+. .+..+..++..+.| +...+..++..+.
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~ 206 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALD 206 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 6677632335789999999999999998765433322 33346777775443 4566666665544
No 201
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.3e-10 Score=130.69 Aligned_cols=185 Identities=17% Similarity=0.224 Sum_probs=125.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.+..++.|..++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456678999999999999998888641 234678999999999999999999998752
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.+- ..-..+|.+...+. .....|+||||+|.+.. ...+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 233333210 11234555555432 23457999999998842 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..+....+. ++..+..++..+.|-
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~Gd- 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGS- 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777543 345666677777788888776 65 568899999888888887666543332 344577788887763
Q ss_pred hhhHHHHHH
Q 003623 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.+++..++.
T Consensus 213 LRdALnLLD 221 (702)
T PRK14960 213 LRDALSLTD 221 (702)
T ss_pred HHHHHHHHH
Confidence 344444443
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.25 E-value=1.4e-10 Score=130.74 Aligned_cols=167 Identities=23% Similarity=0.373 Sum_probs=109.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+.. ..+.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 3579999999999999999999887 5678889988776544332211 111222222 2357999999999864
Q ss_pred CcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC---CCHHHHccCCcc--eEEEeCCCChhHHHHHHHHHhc
Q 003623 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK 390 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~i~~P~~~~R~~Il~~~~~ 390 (807)
+.. ....++..++.+......+|+++...|.. +++.+++ ||. ..+++..|+.+.|..|++..+.
T Consensus 214 ~~~---------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KER---------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CHH---------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 321 12334555554444445566666666654 5677776 664 5799999999999999998876
Q ss_pred CCCCC-CchhHHHHHHhhCCCchhhHHHHHHHH
Q 003623 391 NMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 422 (807)
Q Consensus 391 ~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 422 (807)
...+. ++..+..++....+- .+++...+...
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~l 314 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRSN-VRELEGALNRL 314 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 54332 344578888877753 34455444443
No 203
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.4e-10 Score=133.49 Aligned_cols=182 Identities=21% Similarity=0.296 Sum_probs=127.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
...|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 467999999999999998876531 234569999999999999999999997652
Q ss_pred ------------EEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHH
Q 003623 543 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLN 606 (807)
Q Consensus 543 ------------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~ 606 (807)
++.++. ..+..-..++++.+.+... ...|+||||+|.|. ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 222211 1123345788888776532 34699999999873 23578
Q ss_pred HHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHccc
Q 003623 607 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 607 ~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g 685 (807)
.||..|+. ....+++|++|+.++.+-+.+.+ |+. .+.|+.++.++....+...+++.++. .+..+..+++.+.|
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 89999985 33456677777778888888887 885 78899888888877777766654433 23346677776654
Q ss_pred CChhhHHHHHH
Q 003623 686 FSGADITEICQ 696 (807)
Q Consensus 686 ~sg~di~~l~~ 696 (807)
+.+++.++++
T Consensus 215 -~lr~A~~lLe 224 (620)
T PRK14948 215 -GLRDAESLLD 224 (620)
T ss_pred -CHHHHHHHHH
Confidence 2344444443
No 204
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=3.4e-10 Score=131.32 Aligned_cols=185 Identities=17% Similarity=0.264 Sum_probs=126.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|++|.|.+..++.|+..+... .-+..+||+||+|+||||+|+.+|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 455678999999999999998887641 123458999999999999999999998763
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+ ......|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 12222211 01123345554443 234456999999998842 245678
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.+..|.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..++..+.|-.
T Consensus 140 LKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 140 LKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSM 214 (647)
T ss_pred HHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 88887633 456667678888899999888 65 778999999998888887665433332 3445777888888754
Q ss_pred hhhHHHHHH
Q 003623 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
+. ...++.
T Consensus 215 R~-Al~lld 222 (647)
T PRK07994 215 RD-ALSLTD 222 (647)
T ss_pred HH-HHHHHH
Confidence 43 334443
No 205
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.5e-10 Score=132.65 Aligned_cols=190 Identities=19% Similarity=0.267 Sum_probs=126.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEE-----------E
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI-----------S 545 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i-----------~ 545 (807)
..+|+++.|++.+++.|+..+.. -..+.++||+||+|||||++|+++|+.+.+.-. .
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 45799999999999998876542 144566999999999999999999999865210 0
Q ss_pred E--e---------c--cchhhcccCCc---hHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHH
Q 003623 546 V--K---------G--PELLTMWFGES---EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 605 (807)
Q Consensus 546 v--~---------~--~~l~~~~vg~s---e~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~ 605 (807)
- . + .++ ..+.|.+ -..|+.+.+.+. .....|++|||+|.+.. ...
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------~a~ 144 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------AAF 144 (620)
T ss_pred CCccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------------HHH
Confidence 0 0 0 000 0011211 345666555442 23456999999998743 246
Q ss_pred HHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHcc
Q 003623 606 NQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV-SKDVDLRALAKYTQ 684 (807)
Q Consensus 606 ~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~~~~la~~~~ 684 (807)
+.||..|+... ...++|.+|+.++.|-+.+.+ |+. .+.|.+++.++....++..+++.++ .++..+..|++.+.
T Consensus 145 naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 78899888643 234555555667888888887 775 8999999999988888887776554 24455677777765
Q ss_pred cCChhhHHHHHHHHH
Q 003623 685 GFSGADITEICQRAC 699 (807)
Q Consensus 685 g~sg~di~~l~~~A~ 699 (807)
| +.+++.+.+....
T Consensus 220 G-dlr~al~eLeKL~ 233 (620)
T PRK14954 220 G-SMRDAQSILDQVI 233 (620)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 3444444444433
No 206
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.24 E-value=3.9e-10 Score=114.13 Aligned_cols=191 Identities=21% Similarity=0.318 Sum_probs=127.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (807)
.+..+.++++.|++.+++.|.+-...-+. -.+..++||+|++|||||++++++..++ |..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678899999999999998766543221 1467899999999999999999999876 55677777655
Q ss_pred hhhhhhchhHHHHHHHHHHHH-hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-c-CCeEEEEEecCCC
Q 003623 278 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-S-RAHVIVIGATNRP 354 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~-~~~v~vI~atn~~ 354 (807)
+. .+..+++... ...+-|||+|++.+=. .+ .-...|.++|+|-- . ..+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~--~d--------~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEE--GD--------TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCC--Cc--------HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 53 2333444433 2346799999976421 11 11255667777533 2 3589999999976
Q ss_pred CCCCH---------------------HHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCc-hhHH----HHHHhhC
Q 003623 355 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDD-VDLE----RIAKDTH 408 (807)
Q Consensus 355 ~~ld~---------------------al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~-~~l~----~la~~t~ 408 (807)
.-+.. .+.-..||...+.|..|+.++-++|++.++....+.-+ ..+. ..+..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 43322 22234599999999999999999999999876655433 2222 2233344
Q ss_pred CCchhhHHHHH
Q 003623 409 GYVGADLAALC 419 (807)
Q Consensus 409 g~~~~dl~~l~ 419 (807)
|.+|+...+.+
T Consensus 232 ~RSGRtA~QF~ 242 (249)
T PF05673_consen 232 GRSGRTARQFI 242 (249)
T ss_pred CCCHHHHHHHH
Confidence 56665544444
No 207
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.4e-10 Score=133.80 Aligned_cols=183 Identities=21% Similarity=0.297 Sum_probs=124.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 542 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~-------------- 542 (807)
..+|+++.|++++++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 457999999999999988766521 234458999999999999999999887531
Q ss_pred -----------EEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHH
Q 003623 543 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 543 -----------~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
++.++... ...-..++.+.+.+.. ....|+||||+|.|.. ..++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------------~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------------AAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------------HHHHH
Confidence 12222211 0112345555444332 3356999999998742 34678
Q ss_pred HHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccC
Q 003623 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 686 (807)
||..|+... ...++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+++.++. ++..+..|++.+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888643 345566666777777788876 876 78999999999999998888766543 33346677776654
Q ss_pred ChhhHHHHHHH
Q 003623 687 SGADITEICQR 697 (807)
Q Consensus 687 sg~di~~l~~~ 697 (807)
+.+++.+.++.
T Consensus 214 dlr~al~~Lek 224 (585)
T PRK14950 214 SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHH
Confidence 55555555554
No 208
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=1.7e-10 Score=125.68 Aligned_cols=159 Identities=25% Similarity=0.368 Sum_probs=110.8
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhh
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 279 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~ 279 (807)
++..+.+++++.|.++..+.+..++... ..+..+||+||||+|||++++++++.++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3556678999999999999998887631 22445677999999999999999999998888898866
Q ss_pred hhhhchhHHHHHHHHHHH-HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCC
Q 003623 280 SKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 358 (807)
Q Consensus 280 ~~~~g~~~~~i~~if~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld 358 (807)
.. .......+....... ....+.+++|||+|.+... .....|...++... ..+.+|.+||.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------DAQRHLRSFMEAYS--KNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------HHHHHHHHHHHhcC--CCceEEEEcCChhhch
Confidence 11 111112222221111 1135689999999877211 11234445555543 3456777889888999
Q ss_pred HHHHccCCcceEEEeCCCChhHHHHHHHHH
Q 003623 359 PALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (807)
Q Consensus 359 ~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~ 388 (807)
+++++ |+ ..+.++.|+.+++..+++..
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99998 77 46899999999998877654
No 209
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.23 E-value=3.3e-11 Score=123.49 Aligned_cols=168 Identities=21% Similarity=0.368 Sum_probs=108.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCch-HHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se-~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
..++||||+|+|||+|.++++++. +..++++++.++...+..... ..+..+.+..+ ...+|+||+++.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 348999999999999999999874 467888888888765432221 12233333333 3469999999998643
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC---CccccCCCCCc--ceeecCCCCHHHHHHHHHHH
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 664 (807)
.+....|...++.+...++.+|+++...|..+ ++.+.+ ||. ..+.+.+|+.+.|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 23455566666655555666777776777644 566666 877 48888999999999999999
Q ss_pred hccCCCCCccc-HHHHHHHcccCChhhHHHHHHHHHH
Q 003623 665 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACK 700 (807)
Q Consensus 665 l~~~~~~~~~~-~~~la~~~~g~sg~di~~l~~~A~~ 700 (807)
+...++.-+.+ ++.|++... -+-++|..++.....
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDA 214 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHH
Confidence 98877664444 455666543 356777776665443
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.22 E-value=1.3e-10 Score=126.71 Aligned_cols=170 Identities=22% Similarity=0.290 Sum_probs=113.7
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC-----CeEEEEeccch
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~i~v~~~~l 551 (807)
+.+|+++.|.+++++.+...+.. ....+++|+||||||||++++++++++. .+++.++.++.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 35789999999999888877642 1123589999999999999999999863 34555544332
Q ss_pred hhcccCCchHHHHHHH-HHHHh-----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEee
Q 003623 552 LTMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf-~~a~~-----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~ 625 (807)
. ....++..+ +.++. ..+.++++||+|.+... ..+.|+..++.... ...+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~~--~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYSQ--NTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCCC--CCeEEE
Confidence 1 111222222 22221 23469999999987431 24556666665443 234555
Q ss_pred cCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcc
Q 003623 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQ 684 (807)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~ 684 (807)
++|.+..+.+++.+ |+. .+.|++|+.++...+++..+++.++. .+..+..+++.+.
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~ 194 (319)
T PRK00440 138 SCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSE 194 (319)
T ss_pred EeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 66777777777776 876 68999999999999999998776653 3445677776654
No 211
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=8.3e-10 Score=113.22 Aligned_cols=164 Identities=23% Similarity=0.428 Sum_probs=103.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhhcCC
Q 003623 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~-~i~~if~~a~~~~p~il~iDEid~l~~~ 316 (807)
..++||||+|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcCc
Confidence 469999999999999999998874 4568889888876654432221 1122 22222 24579999999998532
Q ss_pred cCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC---CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCC-
Q 003623 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM- 392 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~- 392 (807)
.+....|..+++.+...++.+|+++...|.. +++.|++.......+.+..|+.+.|.+|++..+...
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 2344667777777766677777777666664 467887744455689999999999999999776543
Q ss_pred -CCCCchhHHHHHHhhCCCchhhHHHHH
Q 003623 393 -KLSDDVDLERIAKDTHGYVGADLAALC 419 (807)
Q Consensus 393 -~l~~~~~l~~la~~t~g~~~~dl~~l~ 419 (807)
.+++ .-+..++....+ ..+.+..++
T Consensus 184 ~~l~~-~v~~~l~~~~~~-~~r~L~~~l 209 (219)
T PF00308_consen 184 IELPE-EVIEYLARRFRR-DVRELEGAL 209 (219)
T ss_dssp --S-H-HHHHHHHHHTTS-SHHHHHHHH
T ss_pred CCCcH-HHHHHHHHhhcC-CHHHHHHHH
Confidence 4333 335667776654 334444433
No 212
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=4.9e-10 Score=127.40 Aligned_cols=193 Identities=23% Similarity=0.288 Sum_probs=130.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE---------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------- 271 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------- 271 (807)
++.+-+|+|+.|++..++.|+..+... ..+.++||+|||||||||+|+++|+.+++...
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456678999999999999988776531 23568999999999999999999999865311
Q ss_pred ---EEechhhhhh----------hhchhHHHHHHHHHHHHhc----CCeEEEEccchhhcCCcCCCchhHHHHHHHHHHH
Q 003623 272 ---CINGPEIMSK----------LAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 334 (807)
Q Consensus 272 ---~v~~~~l~~~----------~~g~~~~~i~~if~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~ 334 (807)
.-+|..+... ........++.+++.+... ...+++|||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 0111111110 0112335677777766432 346999999998742 23456676
Q ss_pred HhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchh
Q 003623 335 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 413 (807)
Q Consensus 335 ~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~ 413 (807)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++.++...+++..++..... ++..+..++..+.|. .+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~Gs-lR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGS-AR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 67643 3456666667778889998887 66 568899999999999998777654432 334577888888774 44
Q ss_pred hHHHHHHHH
Q 003623 414 DLAALCTEA 422 (807)
Q Consensus 414 dl~~l~~~a 422 (807)
++..++..+
T Consensus 225 ~al~~Ldka 233 (507)
T PRK06645 225 DAVSILDQA 233 (507)
T ss_pred HHHHHHHHH
Confidence 444444443
No 213
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=9.4e-11 Score=135.98 Aligned_cols=190 Identities=22% Similarity=0.246 Sum_probs=129.4
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEe-c-------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 548 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~-~------- 548 (807)
..+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+...... +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 35789999999999999887653 1 34567999999999999999999998765321111 0
Q ss_pred -------------cchhhcc--cCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHH
Q 003623 549 -------------PELLTMW--FGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 549 -------------~~l~~~~--vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
+|++... -...-..+|.+.+.++.. ...|+||||+|.|.. ...+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHHH
Confidence 1111000 001134577777766543 357999999998742 3478889
Q ss_pred HHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcccCCh
Q 003623 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 688 (807)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~sg 688 (807)
..|+... ..+++|++|+.++.+-+.+.+ |+. .+.|..|+.++....++..+++.++.-+ ..+..|++.+.| +.
T Consensus 154 KtLEePp--~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPP--PHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCC--CCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 8888643 345566666777777788877 885 8999999999999999988877655433 345566666554 45
Q ss_pred hhHHHHHHHH
Q 003623 689 ADITEICQRA 698 (807)
Q Consensus 689 ~di~~l~~~A 698 (807)
+++.+.+..+
T Consensus 228 r~al~~Ldkl 237 (598)
T PRK09111 228 RDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.22 E-value=7.7e-11 Score=112.09 Aligned_cols=122 Identities=45% Similarity=0.685 Sum_probs=84.9
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHH---HHHHHHHHHhCCCeEEEEcccchhh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~---i~~lf~~a~~~~p~ilfiDEid~l~ 587 (807)
...+++++||||||||++++.+++.+ +.+++.+.+.+....+....... ....+..+....+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 88889888877654332211111 1222334455667899999999872
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcCCCC----CCcEEEeecCCCCC--CCCccccCCCCCcceeecCC
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 651 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~----~~~v~vi~aTn~~~--~ld~allrpgRf~~~i~~~~ 651 (807)
. .....++..+..... ..++.+|++||... .+++.+.. ||+..+++++
T Consensus 98 ~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 R--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred H--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 2 123444454544432 46788899998877 67777776 9998888764
No 215
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.22 E-value=3.7e-10 Score=130.53 Aligned_cols=181 Identities=21% Similarity=0.318 Sum_probs=117.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEechh
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPE 277 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~ 277 (807)
+.|.|-++++++|..++.-.+.. -.++..++|+|+||||||++++.+..++. ..++.|||..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56889999999998887643321 12333457999999999999999987661 4568899854
Q ss_pred hhh----------hhh------c-hhHHHHHHHHHHHHh--cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc
Q 003623 278 IMS----------KLA------G-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 278 l~~----------~~~------g-~~~~~i~~if~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
+.. ... | .....+..+|..... ....||+|||||.|.... +.++-.|..+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 211 110 1 123345566665422 335699999999997542 233444444433
Q ss_pred cccCCeEEEEEecCC---CCCCCHHHHccCCcce-EEEeCCCChhHHHHHHHHHhcCCC-CCCchhHHHHHHhhC
Q 003623 339 LKSRAHVIVIGATNR---PNSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTH 408 (807)
Q Consensus 339 ~~~~~~v~vI~atn~---~~~ld~al~r~~Rf~~-~i~i~~P~~~~R~~Il~~~~~~~~-l~~~~~l~~la~~t~ 408 (807)
.....++|||++|. ++.+++.+++ ||.. ++.|++++.++..+||+..+.... +.++..+..+|+...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 23457899999986 4466788877 4433 478899999999999998876532 233444566665433
No 216
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.22 E-value=6.3e-10 Score=122.39 Aligned_cols=180 Identities=24% Similarity=0.334 Sum_probs=117.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEec
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 275 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~-----~~~i~v~~ 275 (807)
++.+.+++++.|.+..++.|.+++..+ ...+++|+||||||||++|+++++.+. ..++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 455667899999999999998887541 123799999999999999999999874 34577787
Q ss_pred hhhhhhhh-------------ch-------hHHHHHHHHHHHHhc-----CCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 276 PEIMSKLA-------------GE-------SESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 276 ~~l~~~~~-------------g~-------~~~~i~~if~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
.++..... +. ....++.+.+..... .+.+++|||++.+.+. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HHH
Confidence 66532210 00 112333343333332 2459999999977321 224
Q ss_pred HHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
.|...++..... ..+|.+++.+..+.+.+++ |+ ..+++.+|+.++...+++..+.+..+. ++..+..++..+.|
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 456666654433 2344455555667777876 54 568999999999999998776544332 34457777777643
No 217
>PRK06620 hypothetical protein; Validated
Probab=99.21 E-value=9.1e-11 Score=119.67 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=93.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
..++||||||||||+|++++++..+..++. .... ....+ . ...++++|||+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccch--------
Confidence 569999999999999999999887654332 1000 01111 1 23699999999541
Q ss_pred CCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCC--CCccccCCCCCc--ceeecCCCCHHHHHHHHHHHhccCCCC
Q 003623 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI--IDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPVS 671 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~--ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 671 (807)
.. .|...++.+...++.++|+++..|.. + |++.+ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 99 ------~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 99 ------EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred ------HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 23333333334556788888876654 5 77776 886 468999999999999999888765544
Q ss_pred C-cccHHHHHHHcccCChhhHHHHHHH
Q 003623 672 K-DVDLRALAKYTQGFSGADITEICQR 697 (807)
Q Consensus 672 ~-~~~~~~la~~~~g~sg~di~~l~~~ 697 (807)
- +.-++.|++...+ +.+.+.+++..
T Consensus 167 l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 167 ISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred CCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 3 3446677776543 45555555554
No 218
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=2.3e-10 Score=129.28 Aligned_cols=166 Identities=19% Similarity=0.296 Sum_probs=107.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhH-HHHHHHHHHHHhcCCeEEEEccchhhcCC
Q 003623 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~-~~i~~if~~a~~~~p~il~iDEid~l~~~ 316 (807)
.+++||||+|||||+|++++++.+ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999886 356788888877655433221 11222 22222335789999999988643
Q ss_pred cCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC---CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC--
Q 003623 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-- 391 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~-- 391 (807)
.. ....+...++.+......+|+++.+.|..+ .+.+++.......+.+..|+.+.|..|++..+..
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 21 112344445544444556666666677654 4566663333567889999999999999987653
Q ss_pred CCCCCchhHHHHHHhhCCCchhhHHHHHH
Q 003623 392 MKLSDDVDLERIAKDTHGYVGADLAALCT 420 (807)
Q Consensus 392 ~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 420 (807)
+.+++ ..+..++....+- .+.+...+.
T Consensus 281 ~~l~~-ev~~~Ia~~~~~~-~R~L~g~l~ 307 (440)
T PRK14088 281 GELPE-EVLNFVAENVDDN-LRRLRGAII 307 (440)
T ss_pred CCCCH-HHHHHHHhccccC-HHHHHHHHH
Confidence 44444 3477788877753 334444433
No 219
>PRK06893 DNA replication initiation factor; Validated
Probab=99.20 E-value=3.7e-10 Score=116.86 Aligned_cols=148 Identities=16% Similarity=0.236 Sum_probs=97.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCC
Q 003623 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~ 319 (807)
..++||||||||||+|++++|+++ +....+++..... .....+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 2334444432211 1111223222 2457999999998864321
Q ss_pred CchhHHHHHHHHHHHHhhccccCCe-EEEEEecCCCCCCC---HHHHccCCcceEEEeCCCChhHHHHHHHHHhc--CCC
Q 003623 320 THGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 393 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~atn~~~~ld---~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~--~~~ 393 (807)
....|..+++....... +++++++..|..++ +.+++..++...+.++.|+.++|.+|++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 11235555655544443 55666666676554 88888667778899999999999999997664 344
Q ss_pred CCCchhHHHHHHhhCCC
Q 003623 394 LSDDVDLERIAKDTHGY 410 (807)
Q Consensus 394 l~~~~~l~~la~~t~g~ 410 (807)
+++ .-+..++.+..|-
T Consensus 181 l~~-~v~~~L~~~~~~d 196 (229)
T PRK06893 181 LSD-EVANFLLKRLDRD 196 (229)
T ss_pred CCH-HHHHHHHHhccCC
Confidence 443 3477788887754
No 220
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.7e-10 Score=116.99 Aligned_cols=132 Identities=24% Similarity=0.384 Sum_probs=90.5
Q ss_pred ccccchhhhhhhhhhcccccCCChhhhhhh----cCCC-CcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-hc
Q 003623 481 EDIGGLENVKRELQETVQYPVEHPEKFEKF----GMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TM 554 (807)
Q Consensus 481 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~----~~~~-~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~ 554 (807)
+.++|++..|+.|.-.+-. |...+... .+.. ..++||.||+|||||.||+.+|+.++.||-.-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVYN---HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN---HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeehh---HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 3477888888877655432 11111110 1222 34599999999999999999999999999888877765 47
Q ss_pred ccCCchH-HHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC
Q 003623 555 WFGESEA-NVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 615 (807)
Q Consensus 555 ~vg~se~-~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~ 615 (807)
|+|+.-. -+-++.+.|. +....|++|||||.++.+..+.+-..+-...-|.+.||..++|-
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 9998744 4556665542 22346999999999987653332222233466889999999984
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.19 E-value=5e-10 Score=110.95 Aligned_cols=168 Identities=21% Similarity=0.373 Sum_probs=124.0
Q ss_pred ccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccc
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 550 (807)
Q Consensus 474 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~ 550 (807)
..+.+...+|.|++.+|+.|.+.-...+. | .|..++||+|..|||||+|+||+-++. +...+.|...+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34568899999999999998776443222 2 456789999999999999999999887 45678888777
Q ss_pred hhhcccCCchHHHHHHHHHHHhC-CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCC--CCcEEEeecC
Q 003623 551 LLTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGAT 627 (807)
Q Consensus 551 l~~~~vg~se~~i~~lf~~a~~~-~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~--~~~v~vi~aT 627 (807)
+.. +-.+++..+.. ..-|||+|+.-. + ..+.-...|-..|||-.. ..+|+|.||+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e---~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF----------E---EGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC----------C---CCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 743 34455554443 246999999744 1 112345666777888543 4589999999
Q ss_pred CCCCCCCccc--------------------cCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCC
Q 003623 628 NRPDIIDPAL--------------------LRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSK 672 (807)
Q Consensus 628 n~~~~ld~al--------------------lrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~ 672 (807)
||.+.|..-+ .-+.||...+.|++++.++-..|+..++++..+.-
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 9987664211 11359999999999999999999999999887764
No 222
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.4e-10 Score=127.04 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=121.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|+|+.|+++.++.|+.++... ..+..+||+|||||||||+|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 556779999999999999998887641 224457999999999999999999988531
Q ss_pred ------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHH
Q 003623 270 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 270 ------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
++.+++.. ...-..++.+.+.+. ...+.++||||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 23333321 111233455433332 2356799999998662 22345666
Q ss_pred HHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
..++... ..+++|.+++.+..+.+.+++ |+ ..+.+..|+.++-...++..++...+. ++..+..++..+.|-.
T Consensus 138 k~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 138 KTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM 211 (504)
T ss_pred HHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6666532 356666677888899999987 55 468999999999888888776544332 3445777888887643
No 223
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.19 E-value=1.3e-10 Score=125.56 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=103.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-------CC--eEEEEe
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QA--NFISVK 547 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-------~~--~~i~v~ 547 (807)
...|++|.|++++++.+.-.... ....++||+|+||||||++|+++++.+ +. ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999998877643221 112579999999999999999999987 22 222221
Q ss_pred c-cch--------hh---------------cccCCc--hHHH---HHHHHHH--HhCCCeEEEEcccchhhhhcCCCCCC
Q 003623 548 G-PEL--------LT---------------MWFGES--EANV---REIFDKA--RQSAPCVLFFDELDSIATQRGSSVGD 596 (807)
Q Consensus 548 ~-~~l--------~~---------------~~vg~s--e~~i---~~lf~~a--~~~~p~ilfiDEid~l~~~r~~~~~~ 596 (807)
+ +++ .. ..+|.. ++.+ ...|+.- ....-.+||+|||+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 111 00 011100 0000 0011100 00111499999999863
Q ss_pred CCccHHHHHHHHHHHHcCCC-----------CCCcEEEeecCCCCC-CCCccccCCCCCcceeecCCCCH-HHHHHHHHH
Q 003623 597 AGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-ESRLQIFKA 663 (807)
Q Consensus 597 ~~~~~~~v~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~ 663 (807)
..+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|++.
T Consensus 142 -----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 142 -----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred -----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 346777888776421 234789999999755 68889998 9999999998866 999999987
Q ss_pred Hh
Q 003623 664 CL 665 (807)
Q Consensus 664 ~l 665 (807)
..
T Consensus 215 ~~ 216 (334)
T PRK13407 215 RD 216 (334)
T ss_pred hh
Confidence 54
No 224
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=4.4e-10 Score=128.71 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=123.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+-+|+|+.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456678999999999999999888642 223468999999999999999999998653
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+.+ ...+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHH
Confidence 23333321 112233555555432 23446999999998842 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++..+-...++..++...+. ++..+..++..+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 77777643 345666667777888888877 55 456778777777666666555443332 33457778777776 3
Q ss_pred hhhHHHHHHHH
Q 003623 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
..++..++..+
T Consensus 214 lR~al~lLdq~ 224 (509)
T PRK14958 214 VRDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHHH
Confidence 44555555433
No 225
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=7e-10 Score=125.15 Aligned_cols=187 Identities=22% Similarity=0.274 Sum_probs=128.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+.+|+|+.|++..++.|+.++... ..+.++||+||+|+||||+|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 456678999999999999998777641 23568999999999999999999997643
Q ss_pred ------------cEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++.+ ...-..++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 124444321 1123456666666542 3346999999998842 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..+++..++.++....+...+...... ++..+..++..+.| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 346666677777888888887 55 558899999988888888766544332 34457778888876 3
Q ss_pred hhhHHHHHHHH
Q 003623 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
..++..++..+
T Consensus 211 lR~alslLdql 221 (491)
T PRK14964 211 MRNALFLLEQA 221 (491)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 226
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=4.7e-10 Score=128.31 Aligned_cols=167 Identities=19% Similarity=0.297 Sum_probs=109.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCc
Q 003623 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~ 317 (807)
..++|||++|||||+|+++|++.+ +..++++++.++...+...........|..-. ..+.+|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999986 45778999888776655433322222343322 346899999999986543
Q ss_pred CCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC---CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC
Q 003623 318 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL 394 (807)
Q Consensus 318 ~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l 394 (807)
. ....|..+++.+....+-+||++...|. .+++.|++.......+.+..|+.+.|.+||+..+....+
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1233555555554444445554444443 568889884445677799999999999999988764433
Q ss_pred C-CchhHHHHHHhhCCCchhhHHHHHH
Q 003623 395 S-DDVDLERIAKDTHGYVGADLAALCT 420 (807)
Q Consensus 395 ~-~~~~l~~la~~t~g~~~~dl~~l~~ 420 (807)
. .+.-+..|+.+..+- ...|..++.
T Consensus 465 ~l~~eVi~yLa~r~~rn-vR~LegaL~ 490 (617)
T PRK14086 465 NAPPEVLEFIASRISRN-IRELEGALI 490 (617)
T ss_pred CCCHHHHHHHHHhccCC-HHHHHHHHH
Confidence 2 233467777776643 344444443
No 227
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=5.7e-10 Score=128.79 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=127.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (807)
++.+-+|+||.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.+++..
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456778999999999999999887641 2346799999999999999999999876431
Q ss_pred --------------EEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 271 --------------FCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 271 --------------i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
+.+++. .......++.+++.+. .....|+||||+|.+. ....+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHH
Confidence 112111 1112245666666542 2345799999998763 1234567
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++-...|+..+....+. ++..+..|++.+.|-
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs- 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS- 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-
Confidence 77777543 345666677888888888875 65 557788888888888887766654432 334577788777653
Q ss_pred hhhHHHHHHHH
Q 003623 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 214 lRdAlnLLDqa 224 (709)
T PRK08691 214 MRDALSLLDQA 224 (709)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 228
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.18 E-value=6.7e-10 Score=117.34 Aligned_cols=133 Identities=25% Similarity=0.295 Sum_probs=91.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech------hhhhhhhchhHHHH---------------------HHH
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIMSKLAGESESNL---------------------RKA 293 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------~l~~~~~g~~~~~i---------------------~~i 293 (807)
.+.++||.||||||||++|+++|..++.+++.++|. ++.+.+.+.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 357899999999999999999999999999998774 33333322111110 011
Q ss_pred HHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--------------cCCeEEEEEecCCCC----
Q 003623 294 FEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN---- 355 (807)
Q Consensus 294 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------------~~~~v~vI~atn~~~---- 355 (807)
+. +. ....+++|||++.+.+ .+...|+..++.-. .+..+.+|+|+|+..
T Consensus 100 ~~-A~-~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TL-AV-REGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH-HH-HcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22 22 2346999999997632 23455666664311 223667899999763
Q ss_pred -CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh
Q 003623 356 -SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 356 -~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~ 389 (807)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888987 87 678999999999999998765
No 229
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.18 E-value=2.1e-09 Score=111.64 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=105.0
Q ss_pred CCccccc--ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEechhhh
Q 003623 205 VGYDDVG--GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIM 279 (807)
Q Consensus 205 ~~~~di~--G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~---~~~i~v~~~~l~ 279 (807)
.+|++.. +....+..++++... ....+++|+||+|||||+|++++++.+. ..+.+++.....
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 3455532 345555666655432 2235899999999999999999998764 334555544322
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCe-EEEEEecCCCCC--
Q 003623 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS-- 356 (807)
Q Consensus 280 ~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~-v~vI~atn~~~~-- 356 (807)
.. ...+++.... ..+++|||++.+..+. . ....|..+++.....++ -++++++++|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----L----WEMAIFDLYNRILESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----H----HHHHHHHHHHHHHHcCCCeEEEeCCCChHHcC
Confidence 11 1122222221 2589999999885432 1 11234444444333343 344555556655
Q ss_pred -CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC--CCCCCchhHHHHHHhhCCC
Q 003623 357 -IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 357 -ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~--~~l~~~~~l~~la~~t~g~ 410 (807)
+.|.|++.......+.+..|+.+++.++++..+.. +.+++ .-+..++.+..+-
T Consensus 147 ~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~-~v~~~L~~~~~~d 202 (235)
T PRK08084 147 LGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPE-DVGRFLLKRLDRE 202 (235)
T ss_pred cccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhhcCC
Confidence 57899983333478999999999999999875543 44443 3477888887764
No 230
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.17 E-value=6.2e-10 Score=105.81 Aligned_cols=121 Identities=48% Similarity=0.752 Sum_probs=79.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHHH---HHHHHHHHHhcCCeEEEEccchhhc
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~---i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
.+.+++|+||||||||++++.+++.+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 46789999999999999999999998 78888888876544332211111 1222333444568899999999772
Q ss_pred CCcCCCchhHHHHHHHHHHHHhhcccc----CCeEEEEEecCCCC--CCCHHHHccCCcceEEEeC
Q 003623 315 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~----~~~v~vI~atn~~~--~ld~al~r~~Rf~~~i~i~ 374 (807)
+ .....+...+..... ...+.+|++++... .+++.+.. ||+..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 112334444444332 35677888888776 67777776 887666654
No 231
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.1e-10 Score=127.48 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=120.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|.+..++.|+.++... .-+..+||+||+|||||++|+.+|+.+.+.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 456778999999999999998887641 113579999999999999999999998652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++..- ..-..++.+.+. +......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 233333110 011223333222 2234457999999998842 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|+..+....+ .++..+..++..+.|-.
T Consensus 140 Lk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 140 LKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred HHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 77776532 356777788888888888876 65 46789999999888888776554433 23445777777777643
No 232
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=1.1e-09 Score=131.16 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=119.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 269 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------- 269 (807)
.++...+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+.||+.+++.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 3566779999999999999998887641 123458999999999999999999998642
Q ss_pred ----------------EEEEechhhhhhhhchhHHHHHHHHHH----HHhcCCeEEEEccchhhcCCcCCCchhHHHHHH
Q 003623 270 ----------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 270 ----------------~i~v~~~~l~~~~~g~~~~~i~~if~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~ 137 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGF 137 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHH
Confidence 122222110 012233443332 2334557999999999842 234
Q ss_pred HHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhC
Q 003623 330 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTH 408 (807)
Q Consensus 330 ~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~ 408 (807)
+.|++.|+.... .+++|.+|+.++.|-+.+++ |+ ..+.|..+..++...+|...++...+. ++..+..++....
T Consensus 138 NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sg 212 (824)
T PRK07764 138 NALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGG 212 (824)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888876443 55666667777888888887 55 668898898888888887776544433 3334566666666
Q ss_pred C
Q 003623 409 G 409 (807)
Q Consensus 409 g 409 (807)
|
T Consensus 213 G 213 (824)
T PRK07764 213 G 213 (824)
T ss_pred C
Confidence 5
No 233
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=7.5e-10 Score=124.85 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCC
Q 003623 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~ 319 (807)
.+++||||+|+|||+|++++++.+ +..++++++.++...+.......-...|.... ..+.+|+|||++.+..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 57788888876654433222111112233322 3467999999999864321
Q ss_pred CchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC---CCCHHHHccCCcc--eEEEeCCCChhHHHHHHHHHhcCCCC
Q 003623 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 394 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~i~~P~~~~R~~Il~~~~~~~~l 394 (807)
....+...++.+......+|++++..|. .+++.|++ ||. ..+.+..|+.+.|..||+..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1123444444333334556665555554 45788887 664 78899999999999999987765433
Q ss_pred C-CchhHHHHHHhhCC
Q 003623 395 S-DDVDLERIAKDTHG 409 (807)
Q Consensus 395 ~-~~~~l~~la~~t~g 409 (807)
. ++..+..++....+
T Consensus 290 ~l~~evl~~la~~~~~ 305 (445)
T PRK12422 290 RIEETALDFLIEALSS 305 (445)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 2 33346667776664
No 234
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.15 E-value=8.9e-10 Score=121.83 Aligned_cols=217 Identities=26% Similarity=0.345 Sum_probs=131.3
Q ss_pred ccChHHHHHHHHHHHHccccChhh----HhhhCCC-CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhh
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQL----FKSIGVK-PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLA 283 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~----~~~l~i~-~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~ 283 (807)
+.|+++.++.+...+....+.-.. ...-++. ...++||+||||||||++|+++|..++.+|..+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 899999999887666321111000 0000111 2458999999999999999999999999999888877642 455
Q ss_pred chh-HHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCc---hhHHHHHHHHHHHHhhcccc-----------CCe
Q 003623 284 GES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKS-----------RAH 344 (807)
Q Consensus 284 g~~-~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~v~~~Ll~~ld~~~~-----------~~~ 344 (807)
|.. +..+...++.+ ....+++|||||+|.+.++..... +-....+.+.|+..|++... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 34444444422 234678999999999987543221 11112466778888765421 124
Q ss_pred EEEEEecCCCC--------------------------C------------------------CCHHHHccCCcceEEEeC
Q 003623 345 VIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDIG 374 (807)
Q Consensus 345 v~vI~atn~~~--------------------------~------------------------ld~al~r~~Rf~~~i~i~ 374 (807)
.++|.|+|-.. . +.|+| .+|++..+.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeecC
Confidence 56666666510 0 11222 36888889999
Q ss_pred CCChhHHHHHHHHH----hcC---------CCCC-CchhHHHHHHh--hCCCchhhHHHHHHHHHHHHHH
Q 003623 375 VPDEVGRLEVLRIH----TKN---------MKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 428 (807)
Q Consensus 375 ~P~~~~R~~Il~~~----~~~---------~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 428 (807)
+.+.+...+|+... .++ ..+. ++.-+..+++. ...|-.+.+..++.......+.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999988888652 211 1111 23335666665 3445556676666665554443
No 235
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.14 E-value=2.1e-09 Score=127.85 Aligned_cols=137 Identities=21% Similarity=0.264 Sum_probs=92.2
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh------hccc-CC-c-hHH-HHHHHHHHHhCCCeEEEEc
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWF-GE-S-EAN-VREIFDKARQSAPCVLFFD 581 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~------~~~v-g~-s-e~~-i~~lf~~a~~~~p~ilfiD 581 (807)
++..+++||.|.||+|||+|..++|+..|-..++|+-++.. +.++ ++ + +-. ...=|-.|.+.. .-+++|
T Consensus 1540 mqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLD 1618 (4600)
T COG5271 1540 MQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLD 1618 (4600)
T ss_pred HhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEee
Confidence 35567899999999999999999999999999999876542 2221 11 0 100 112233333322 478899
Q ss_pred ccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC------------CCCCCcEEEeecCCCC------CCCCccccCCCCC
Q 003623 582 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG------------MSAKKTVFIIGATNRP------DIIDPALLRPGRL 643 (807)
Q Consensus 582 Eid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~------------~~~~~~v~vi~aTn~~------~~ld~allrpgRf 643 (807)
|+..- +..|+.-|-.-||. +....+..|+||-|.- .-|+..++. ||
T Consensus 1619 EiNLa--------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINLA--------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhhh--------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 98642 23344444444442 1234578899998863 478889998 99
Q ss_pred cceeecCCCCHHHHHHHHHHHhc
Q 003623 644 DQLIYIPLPDEESRLQIFKACLR 666 (807)
Q Consensus 644 ~~~i~~~~p~~~~r~~Il~~~l~ 666 (807)
. +|++..++.+....|......
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred h-eEEecccccchHHHHHHhhCC
Confidence 7 889998888888888876654
No 236
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.14 E-value=3e-10 Score=127.53 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=145.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeE-------EE----
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------IS---- 545 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~-------i~---- 545 (807)
...|+++.|++.+.+.|...+... +...+.||.||.|||||++||.+|+.+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 456899999999999999887632 3456799999999999999999999876431 10
Q ss_pred --Ee-c--cchhh--cccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC
Q 003623 546 --VK-G--PELLT--MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 546 --v~-~--~~l~~--~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
+. + .|++- .-...+-..+|++-+++.. ..+.|.+|||++.|- ...+|.||..|+.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhccccc
Confidence 10 0 11110 0001223457777777644 346899999999973 3468999999984
Q ss_pred CCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcccCChhhHHH
Q 003623 615 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 693 (807)
Q Consensus 615 ~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~sg~di~~ 693 (807)
+...|++|.||..++.+++.+++ |+. ...|...+.++....++..+.+..+..+.+ +..+|+.++| |-+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 45679999999999999999998 987 788888899999999999998888775554 5667777765 5688888
Q ss_pred HHHHHHHHH
Q 003623 694 ICQRACKYA 702 (807)
Q Consensus 694 l~~~A~~~a 702 (807)
++..|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 888876654
No 237
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.2e-09 Score=127.66 Aligned_cols=185 Identities=19% Similarity=0.299 Sum_probs=130.0
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 541 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------------- 541 (807)
..+|++|.|++.+++.|...+.. -..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 35799999999999998887652 134556999999999999999999998642
Q ss_pred ----------eEEEEeccchhhcccCCchHHHHHHHHHHHhC----CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHH
Q 003623 542 ----------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 607 (807)
Q Consensus 542 ----------~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~----~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~ 607 (807)
+++.+++.+. .+-..++.+.+.+... ...|++|||+|.+.. ...+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHH
Confidence 3333333211 1234567776665433 246999999998732 35788
Q ss_pred HHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHcccC
Q 003623 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD-VDLRALAKYTQGF 686 (807)
Q Consensus 608 lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~ 686 (807)
||..|+... ...++|++|+.+..|-+++.+ |+. .+.|.+++.++....++..+++.++.-+ ..+..|++.+.|
T Consensus 141 LLK~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPP--SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCC--CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999998643 345566666667888889887 885 7999999999999999888877766533 346777776643
Q ss_pred ChhhHHHHHHHHH
Q 003623 687 SGADITEICQRAC 699 (807)
Q Consensus 687 sg~di~~l~~~A~ 699 (807)
+-+++.+.+....
T Consensus 215 dlr~al~~Lekl~ 227 (614)
T PRK14971 215 GMRDALSIFDQVV 227 (614)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555554433
No 238
>PRK08727 hypothetical protein; Validated
Probab=99.14 E-value=1.4e-09 Score=112.84 Aligned_cols=146 Identities=25% Similarity=0.386 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCC
Q 003623 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 319 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~ 319 (807)
..++|+||+|||||+|+++++..+ +....+++..+.. ..+...++.. ....+|+|||++.+..+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChHH
Confidence 569999999999999999997764 4455666644432 2233344433 34469999999988643211
Q ss_pred CchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC---CHHHHccCCc--ceEEEeCCCChhHHHHHHHHHhc--CC
Q 003623 320 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NM 392 (807)
Q Consensus 320 ~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~Rf--~~~i~i~~P~~~~R~~Il~~~~~--~~ 392 (807)
...+..+++....+..-+++.+...|..+ ++.+++ || ...+.++.|+.+++.+|++.++. ++
T Consensus 112 ---------~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 112 ---------EVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred ---------HHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 12344455544433333444444566655 688887 54 56789999999999999997654 34
Q ss_pred CCCCchhHHHHHHhhCCC
Q 003623 393 KLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 393 ~l~~~~~l~~la~~t~g~ 410 (807)
.++ +..+..++..+.|-
T Consensus 181 ~l~-~e~~~~La~~~~rd 197 (233)
T PRK08727 181 ALD-EAAIDWLLTHGERE 197 (233)
T ss_pred CCC-HHHHHHHHHhCCCC
Confidence 333 34577888887753
No 239
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2e-09 Score=124.34 Aligned_cols=175 Identities=18% Similarity=0.254 Sum_probs=118.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|++..++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456678999999999999999888641 223458999999999999999999987642
Q ss_pred ---------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 270 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 270 ---------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
++.+++... ..-..++.+.+.+ ......|++|||+|.+.. ...+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 122222110 0122344443333 223446999999998842 2446
Q ss_pred HHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..++|..++..+-.+.+...++..... ++..+..++..+.|
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777533 356666677777889999887 64 678899998888888887766554432 33345666665554
No 240
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.13 E-value=2.9e-09 Score=110.25 Aligned_cols=179 Identities=15% Similarity=0.263 Sum_probs=108.7
Q ss_pred CCcccc--cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 003623 205 VGYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 279 (807)
Q Consensus 205 ~~~~di--~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~ 279 (807)
.+|++. ++.+..+..++++.. +.....+++|+||+|||||+|+++++..+ +..++++++.++.
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 455553 344555566666543 12346789999999999999999999875 5577888876653
Q ss_pred hhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeE-EEEEecCCCC--C
Q 003623 280 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN--S 356 (807)
Q Consensus 280 ~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v-~vI~atn~~~--~ 356 (807)
.. + .......+++|||++.+.+. ....|...++........ ++++++..+. .
T Consensus 83 ~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 83 LA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred HH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 21 1 11234569999999987321 123455555554444443 4444443332 3
Q ss_pred CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHHHHHH
Q 003623 357 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 421 (807)
Q Consensus 357 ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 421 (807)
+.+.+.+..+....+.+++|+..++..++........+. ++.-+..++....| +...+..++..
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 457777522235789999999998888888765433322 23346677775554 23444444443
No 241
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.3e-09 Score=122.65 Aligned_cols=176 Identities=18% Similarity=0.269 Sum_probs=118.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+.+|+.+.+.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 456678999999999999998887641 223458999999999999999999987641
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++..- . .-..++.+++.+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 222222110 0 1123444444432 23456999999988742 244667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++-...++..++...+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gd 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGS 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77777532 345566666677888878877 65 678999999988877777665543332 344567777777653
No 242
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.13 E-value=1.4e-09 Score=128.76 Aligned_cols=171 Identities=25% Similarity=0.389 Sum_probs=114.3
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechh
Q 003623 201 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~---~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~ 277 (807)
++.+-+++++.|.+..+. .+++++.. ....+++|+|||||||||+|+++++..+..++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 455678899999998875 45555542 22357999999999999999999999999988888753
Q ss_pred hhhhhhchhHHHHHHHHHHHH-----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 278 IMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
.. ...++..+..+. .....+|||||+|.+... ....|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 112333333321 134579999999987421 1233444443 34677776654
Q ss_pred C--CCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhc-------C--CCCCCchhHHHHHHhhCCC
Q 003623 353 R--PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK-------N--MKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 353 ~--~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~-------~--~~l~~~~~l~~la~~t~g~ 410 (807)
. ...+++++++ |. ..+.++.++.++...+++..+. . +.+ ++..+..++....|-
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~GD 210 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANGD 210 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCCC
Confidence 2 3467888887 43 4588999999999999987665 1 222 334467777777553
No 243
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.7e-09 Score=123.86 Aligned_cols=176 Identities=18% Similarity=0.252 Sum_probs=120.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|+++.|.+..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456778999999999999998877531 224579999999999999999999987531
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+...+.. ....+++|||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHH
Confidence 12222211 0112335555554432 2345999999998732 134567
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCCC
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (807)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..|+..+....+...+..... .++..+..++..+.|-
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd 213 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS 213 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 77777543 356666777788899999887 65 46899999999888888776544332 2334467777777764
No 244
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.13 E-value=9.2e-10 Score=113.01 Aligned_cols=179 Identities=21% Similarity=0.278 Sum_probs=114.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------EEEE
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCI 273 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~------~i~v 273 (807)
+++.+-+++++.|++..++-|...+.. ....++|+|||||||||+.|+++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 356677899999999999999877754 123589999999999999999999998752 2334
Q ss_pred echhhhhhhhchhHHHHHHHHHHHHh---------cCC-eEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCC
Q 003623 274 NGPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (807)
Q Consensus 274 ~~~~l~~~~~g~~~~~i~~if~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (807)
+.++..+.... ..++. -|..... +.| -|++|||.|.+.. .....|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhcccc--
Confidence 44443332211 11111 1111111 122 6999999998852 344677888887544
Q ss_pred eEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 344 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
.+.+|..||..+.|...+.+ |... +.|+....+.-...|+..+..-.+. ++..+..++..+.|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 45666679999888777766 5432 3455555555555555554433333 334577788887763
No 245
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-10 Score=131.51 Aligned_cols=167 Identities=22% Similarity=0.348 Sum_probs=124.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEE
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 546 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~i~v 546 (807)
.-..+.++|-++-.+.+.+.+. .+...+-+|.|+||+|||.++..+|... +...+.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3456778887766555555443 2445568999999999999999999774 4567777
Q ss_pred eccchh--hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEe
Q 003623 547 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 547 ~~~~l~--~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 624 (807)
+...+. .+|-|+.|..++.+.+...+..+.|||||||+.+.+..+... + ....-|-|.-.| .+..+-+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G----~-a~DAaNiLKPaL----ARGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG----G-AMDAANLLKPAL----ARGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc----c-ccchhhhhHHHH----hcCCeEEE
Confidence 777776 489999999999999999998899999999999998754321 1 111222222222 34557788
Q ss_pred ecCCCCC-----CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC
Q 003623 625 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS 668 (807)
Q Consensus 625 ~aTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 668 (807)
|||+.-+ .-|+||-| ||. .|++..|+.++-..|++-.-.++
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 8887643 55899999 998 89999999999999998666544
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=9.2e-10 Score=124.05 Aligned_cols=174 Identities=22% Similarity=0.309 Sum_probs=116.5
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhh
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIA 587 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~ 587 (807)
.++.+-+||+||||-||||||+.+|+++|+..+.|+++|-.+.- .-...|..+.+... ...|.+|++||||.-.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 34556699999999999999999999999999999999854311 11222222222211 2578999999998521
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcC-------CCCC------------CcEEEeecCCCCCCCCccccCCCCCcceee
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDG-------MSAK------------KTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~-------~~~~------------~~v~vi~aTn~~~~ld~allrpgRf~~~i~ 648 (807)
...++.+|..+.. -... -.--|||.+|. ..-|||.---=|-.+|+
T Consensus 401 --------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~ 464 (877)
T KOG1969|consen 401 --------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIA 464 (877)
T ss_pred --------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEE
Confidence 3345555555541 1110 02357888885 45677731114778999
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHH
Q 003623 649 IPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 649 ~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
|++|...-..+=|+..+.+..+. .|...|...++ ++..||++.++...+++.+..
T Consensus 465 f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 465 FVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred ecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 99999887777777777666554 44555555554 456799999999988887653
No 247
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.11 E-value=7.2e-10 Score=119.93 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=106.5
Q ss_pred cCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC-------CeEEEE-
Q 003623 475 VPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV- 546 (807)
Q Consensus 475 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~-------~~~i~v- 546 (807)
.+...|.+|.|++++|..|.-.+..| ...|+||.|++|||||++|++++..+. .+|..-
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 34567999999999999988765532 235799999999999999999987763 123200
Q ss_pred eccchh-----h---------------cc----cCCchHH------HHHHHHHHH---------hCCCeEEEEcccchhh
Q 003623 547 KGPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIA 587 (807)
Q Consensus 547 ~~~~l~-----~---------------~~----vg~se~~------i~~lf~~a~---------~~~p~ilfiDEid~l~ 587 (807)
..+++. . .+ .|.++.. +...|.... ...-.+||+|||+.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 001100 0 00 1112221 111221111 1112599999999874
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcCC---------C--CCCcEEEeecCCCCC-CCCccccCCCCCcceeecCCCC-H
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDGM---------S--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-E 654 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~---------~--~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~-~ 654 (807)
+ .+.+.||..|+.- . -..++++|+|.|..+ .+.++++. ||..++.+..|+ .
T Consensus 158 ~--------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 158 D--------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred H--------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 3 3566677777531 1 124788999888765 68999998 999999999997 6
Q ss_pred HHHHHHHHHHh
Q 003623 655 ESRLQIFKACL 665 (807)
Q Consensus 655 ~~r~~Il~~~l 665 (807)
+.+.+|++...
T Consensus 222 ~~e~~il~~~~ 232 (350)
T CHL00081 222 ELRVKIVEQRT 232 (350)
T ss_pred HHHHHHHHhhh
Confidence 99999998764
No 248
>PHA02244 ATPase-like protein
Probab=99.11 E-value=8.8e-10 Score=118.40 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=83.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEecc----chhhcccCCchH-HHHHHHHHHHhCCCeEEEEcccchhhh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~----~l~~~~vg~se~-~i~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
....+||+||||||||++|+++|..++.+|+.++.- ++.. ++..... .-..++...+ ...+++||||+.+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p 194 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP 194 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCCH
Confidence 345699999999999999999999999999998742 1111 1111111 1112333332 346999999998643
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHcC---------CCCCCcEEEeecCCCC-----------CCCCccccCCCCCcceee
Q 003623 589 QRGSSVGDAGGAADRVLNQLLTEMDG---------MSAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~---------~~~~~~v~vi~aTn~~-----------~~ld~allrpgRf~~~i~ 648 (807)
. +...|...++. .....++.+|+|+|.+ ..+++|++. ||- .|+
T Consensus 195 ~--------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~ 257 (383)
T PHA02244 195 E--------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIE 257 (383)
T ss_pred H--------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-Eee
Confidence 2 23333333331 1124578999999973 577999998 996 799
Q ss_pred cCCCCHHHHHHHH
Q 003623 649 IPLPDEESRLQIF 661 (807)
Q Consensus 649 ~~~p~~~~r~~Il 661 (807)
|+.|+..+ ..|.
T Consensus 258 ~dyp~~~E-~~i~ 269 (383)
T PHA02244 258 FDYDEKIE-HLIS 269 (383)
T ss_pred CCCCcHHH-HHHh
Confidence 99998433 3444
No 249
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=122.65 Aligned_cols=134 Identities=28% Similarity=0.419 Sum_probs=94.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhh--cccCCchHHH------------HHHHHHHHhCCCeEE
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT--MWFGESEANV------------REIFDKARQSAPCVL 578 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~--~~vg~se~~i------------~~lf~~a~~~~p~il 578 (807)
...+++||.||||||||++|+.+|..++.+|+.|.+..-+. ..+|...-.. +.+|...+ +++
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence 34567999999999999999999999999999998864332 1122211111 11222222 499
Q ss_pred EEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC----------CCCCCcEEEeecCC-----CCCCCCccccCCCCC
Q 003623 579 FFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATN-----RPDIIDPALLRPGRL 643 (807)
Q Consensus 579 fiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~----------~~~~~~v~vi~aTn-----~~~~ld~allrpgRf 643 (807)
|+|||+... ..+.+.||..|+. +.-...++||+|+| .-..|.+|+++ ||
T Consensus 117 l~DEInra~--------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf 180 (329)
T COG0714 117 LLDEINRAP--------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RF 180 (329)
T ss_pred EEeccccCC--------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hE
Confidence 999998742 4577888888876 22335789999999 34578999998 99
Q ss_pred cceeecCCC-CHHHHHHHHHHHhc
Q 003623 644 DQLIYIPLP-DEESRLQIFKACLR 666 (807)
Q Consensus 644 ~~~i~~~~p-~~~~r~~Il~~~l~ 666 (807)
...++++.| +.++...++.....
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEEEecCCCCchHHHHHHHHhCcc
Confidence 999999999 55555555554443
No 250
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.1e-09 Score=124.55 Aligned_cols=190 Identities=16% Similarity=0.223 Sum_probs=122.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 270 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---------- 270 (807)
++.+-+|+++.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.-
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 456678999999999999999887642 2234689999999999999999999987521
Q ss_pred ---EEEechhhhh----------hhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHH
Q 003623 271 ---FCINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 271 ---i~v~~~~l~~----------~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
..-+|..+.. ......-..++.+.+.+.. ....|++|||+|.+... ..+.|+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaLL 145 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAML 145 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHHH
Confidence 0001111100 0001112345666655432 23469999999988422 245567
Q ss_pred HHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCch
Q 003623 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (807)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 412 (807)
..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++....|+..+....+. ++..+..++..+.|- .
T Consensus 146 KtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~Gs-l 219 (618)
T PRK14951 146 KTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGS-M 219 (618)
T ss_pred HhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 7666532 355666667777788888877 55 678899999888888887666543333 334577788877763 3
Q ss_pred hhHHHHH
Q 003623 413 ADLAALC 419 (807)
Q Consensus 413 ~dl~~l~ 419 (807)
+++..++
T Consensus 220 R~al~lL 226 (618)
T PRK14951 220 RDALSLT 226 (618)
T ss_pred HHHHHHH
Confidence 4444443
No 251
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.4e-09 Score=125.48 Aligned_cols=187 Identities=18% Similarity=0.260 Sum_probs=123.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+-+|++|.|.++.++.|..++... ..+..+||+||+|+||||+|+.+|+.+++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 445668999999999999998887641 224468999999999999999999998652
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 11222110 1123456666665532 2346999999998742 234567
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...+....+. ++..+..++..+.|-
T Consensus 140 LK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gs- 213 (527)
T PRK14969 140 LKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGS- 213 (527)
T ss_pred HHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 77777632 355666667777778777776 54 567888998888877776655433332 334467777777664
Q ss_pred hhhHHHHHHHH
Q 003623 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
..+...++..+
T Consensus 214 lr~al~lldqa 224 (527)
T PRK14969 214 MRDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 252
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=2.6e-09 Score=124.03 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=125.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|+++.|.+..++.|+..+... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456678999999999999998887641 234568999999999999999999987532
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++. .+..-..++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 2223221 1122345666666543 23356999999998842 234567
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..|+..+-...+...++...+. ++..+..++..+.| .
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777653 2355666667778899999887 65 457899999988888888766554432 33456777777766 3
Q ss_pred hhhHHHHHH
Q 003623 412 GADLAALCT 420 (807)
Q Consensus 412 ~~dl~~l~~ 420 (807)
.++...++.
T Consensus 214 ~R~al~~Ld 222 (559)
T PRK05563 214 MRDALSILD 222 (559)
T ss_pred HHHHHHHHH
Confidence 344444433
No 253
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.10 E-value=7.4e-10 Score=119.98 Aligned_cols=155 Identities=23% Similarity=0.309 Sum_probs=101.0
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-------CCeEE-------
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QANFI------- 544 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-------~~~~i------- 544 (807)
.|..|.|++++|..|.-.+..| ...+++|.|+||+|||++++++++.+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4678999999998876543321 23569999999999999999999876 22221
Q ss_pred --EEec-------------------cchhh-----cccCCc--hHHH--------HHHHHHHHhCCCeEEEEcccchhhh
Q 003623 545 --SVKG-------------------PELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 545 --~v~~-------------------~~l~~-----~~vg~s--e~~i--------~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
..++ .++-. ..+|.. ++.+ .-++.+|. ..++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 0000 11100 122211 0000 01112222 2599999999873
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCCcEEEeecCCCCC-CCCccccCCCCCcceeecCCCCH-H
Q 003623 589 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-E 655 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p~~-~ 655 (807)
..+.+.|+..|+.-. ...++++|+|+|..+ .+.++++. ||..++.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 345677777775321 124688999998655 78899998 9999999999875 8
Q ss_pred HHHHHHHHHh
Q 003623 656 SRLQIFKACL 665 (807)
Q Consensus 656 ~r~~Il~~~l 665 (807)
+|.+|++...
T Consensus 210 er~eIL~~~~ 219 (337)
T TIGR02030 210 LRVEIVERRT 219 (337)
T ss_pred HHHHHHHhhh
Confidence 9999998754
No 254
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.7e-09 Score=109.47 Aligned_cols=82 Identities=26% Similarity=0.414 Sum_probs=61.5
Q ss_pred eEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------CCCcEEEeecCC----CCCCCCccccCCCCC
Q 003623 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRL 643 (807)
Q Consensus 576 ~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~v~vi~aTn----~~~~ld~allrpgRf 643 (807)
.|+||||||.++.+.+.+.++ -.-.-|...||-.++|-. ..+.+++||+.. .|..|=|.|- |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~d--vSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPD--VSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCC--cchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 699999999999875432212 222345667777777742 345788898874 5788888886 799
Q ss_pred cceeecCCCCHHHHHHHH
Q 003623 644 DQLIYIPLPDEESRLQIF 661 (807)
Q Consensus 644 ~~~i~~~~p~~~~r~~Il 661 (807)
...+++...+.+....||
T Consensus 328 PIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 328 PIRVELDALTKEDFERIL 345 (444)
T ss_pred ceEEEcccCCHHHHHHHH
Confidence 999999999999988888
No 255
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=3.6e-09 Score=123.53 Aligned_cols=182 Identities=21% Similarity=0.304 Sum_probs=123.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE---ech-
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI---NGP- 276 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v---~~~- 276 (807)
+..+.+|++|.|++..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+..... .|.
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 456778999999999999999888641 2245689999999999999999999886531100 000
Q ss_pred ---------hhh--hhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcccc
Q 003623 277 ---------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 341 (807)
Q Consensus 277 ---------~l~--~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 341 (807)
++. ..........++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP-- 145 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP-- 145 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--
Confidence 000 00000123446666665543 3446999999998742 2356677777764
Q ss_pred CCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 342 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 342 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
...+++|.+|+.++.+.+.+++ |+ ..+.+..++..+....|...+....+. ++..+..++..+.|-
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs 212 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS 212 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 3456667777888899999887 66 478999999999888887765544332 233467777777764
No 256
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=2.7e-09 Score=118.28 Aligned_cols=175 Identities=22% Similarity=0.341 Sum_probs=120.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
+..+.+|+++.|.++.++.|++.+... ..+..+||+||||+|||++++++++.+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999998887531 234579999999999999999999987432
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ......++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 23333221 1123346666666543 2335999999987732 234566
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
+..++... ..+++|.+|+.++.+.+.+++ |+ ..++++.|+..+...++...++...+. ++..+..++..+.|
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77776532 356666677878888888887 65 568999999999999998776654432 33446666776665
No 257
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.1e-09 Score=118.33 Aligned_cols=176 Identities=23% Similarity=0.289 Sum_probs=118.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 270 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------- 270 (807)
+++.+.+|+++.|.+..++.+++.+... ..+.++|||||||+|||++++++++.+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3566789999999999999998888642 2346899999999999999999999876421
Q ss_pred ---EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCC
Q 003623 271 ---FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 343 (807)
Q Consensus 271 ---i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~ 343 (807)
+.+++. .......++.+++.+.. ..+.+++|||++.+.. ...+.|+..++.. ..
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PA 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CC
Confidence 112111 11123456666665532 3356999999987742 1235566666542 22
Q ss_pred eEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCC
Q 003623 344 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 344 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 409 (807)
..++|.+++.+..+.+++++ |+ ..+++..|+.++...++...+....+ .++..+..++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 34555566677888888887 54 45889999999888888776655443 234456777776654
No 258
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.08 E-value=4.7e-11 Score=113.58 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=73.5
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccch------hhcccC---CchHHHHHHHHHHHhCCCeEEEEcccchhh
Q 003623 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l------~~~~vg---~se~~i~~lf~~a~~~~p~ilfiDEid~l~ 587 (807)
+|+|+||||||||++++.+|..++.+++.+.++.. +..|.- ..+..-..+.+..+ .++++|||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 48999999999999999999999999999887553 223321 11100001111111 45899999999742
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcCCC----C-------CC------cEEEeecCCCCC----CCCccccCCCCC
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMS----A-------KK------TVFIIGATNRPD----IIDPALLRPGRL 643 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----~-------~~------~v~vi~aTn~~~----~ld~allrpgRf 643 (807)
..+++.|+..++.-. . .. ++.+|+|+|..+ .+++|+++ ||
T Consensus 79 --------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 457777888777521 0 11 389999999988 99999998 87
No 259
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.7e-09 Score=118.23 Aligned_cols=190 Identities=18% Similarity=0.194 Sum_probs=121.8
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC-------eEEEE---
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV--- 546 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~i~v--- 546 (807)
...++++.|.+++++.|...+.. | ..+..+||+||+|+|||++|+.+|+.+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 44688999999999999887653 1 34556999999999999999999998744 11000
Q ss_pred -ec-----------cchh---hcc-c--C-----CchHHHHHHHHH----HHhCCCeEEEEcccchhhhhcCCCCCCCCc
Q 003623 547 -KG-----------PELL---TMW-F--G-----ESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGG 599 (807)
Q Consensus 547 -~~-----------~~l~---~~~-v--g-----~se~~i~~lf~~----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~ 599 (807)
.+ +++. ..+ . | -+-..+|.+-+. +......|++|||+|.+..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 00 1111 000 0 0 011234443333 2234557999999999843
Q ss_pred cHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003623 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRAL 679 (807)
Q Consensus 600 ~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 679 (807)
...|.||..|+... .+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++....... .++..+..+
T Consensus 156 ---~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i 226 (351)
T PRK09112 156 ---NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEAL 226 (351)
T ss_pred ---HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHH
Confidence 24677899998633 345555556778888898877 99 5999999999999999987432222 123335667
Q ss_pred HHHcccCChhhHHHHHHHHH
Q 003623 680 AKYTQGFSGADITEICQRAC 699 (807)
Q Consensus 680 a~~~~g~sg~di~~l~~~A~ 699 (807)
++.+.| +++...++.....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 766665 3444444444433
No 260
>PRK05642 DNA replication initiation factor; Validated
Probab=99.07 E-value=4.3e-09 Score=109.16 Aligned_cols=148 Identities=18% Similarity=0.289 Sum_probs=100.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcC
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~ 318 (807)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+..+..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 3679999999999999999998764 5667888877765421 122233222 25899999998754321
Q ss_pred CCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC---CHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC--CC
Q 003623 319 KTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MK 393 (807)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~--~~ 393 (807)
....|.++++.+...+..++++++..|..+ .+.|++.......+.+..|+.++|.++++..+.. +.
T Consensus 115 ---------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~ 185 (234)
T PRK05642 115 ---------WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLH 185 (234)
T ss_pred ---------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 224466677666666677777777666433 6888883333577889999999999999855443 33
Q ss_pred CCCchhHHHHHHhhCC
Q 003623 394 LSDDVDLERIAKDTHG 409 (807)
Q Consensus 394 l~~~~~l~~la~~t~g 409 (807)
++ +.-+..++.+..+
T Consensus 186 l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 186 LT-DEVGHFILTRGTR 200 (234)
T ss_pred CC-HHHHHHHHHhcCC
Confidence 33 3446777777665
No 261
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.07 E-value=1.2e-09 Score=109.51 Aligned_cols=143 Identities=23% Similarity=0.313 Sum_probs=98.1
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCCe------------------------EEEEeccchhhcccCCchHHHHHHHHH
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 569 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~~------------------------~i~v~~~~l~~~~vg~se~~i~~lf~~ 569 (807)
.+..+|||||+|+|||++|+.++..+... +..+.... .. -+-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 45569999999999999999999986431 22221100 00 123456666666
Q ss_pred HHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcc
Q 003623 570 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (807)
+.. ....|+||||+|.+.. ...+.||..|+... ...++|.+||.++.+.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-
Confidence 544 3457999999998743 24677888888633 345555667777999999987 885
Q ss_pred eeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHccc
Q 003623 646 LIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 685 (807)
.+.|++|+.++..++++.. ++. +..+..+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 233 3446666665543
No 262
>PRK09087 hypothetical protein; Validated
Probab=99.07 E-value=1.4e-09 Score=111.85 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=90.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
+.++|+||+|||||+|+++++...+..++.. .++.. .++..... .++++||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCCC-------
Confidence 3499999999999999999998876554432 22211 11222212 3888999997621
Q ss_pred CCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC---CCCccccCCCCCc--ceeecCCCCHHHHHHHHHHHhccCCC
Q 003623 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEESRLQIFKACLRKSPV 670 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~ 670 (807)
. . .+|...++.+...++.+||+++..|. ...|.+.+ ||. .++.+.+|+.+.|.+|++.+++..++
T Consensus 102 ~-----~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 D-----E---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred C-----H---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 0 1 23444444444445667777776654 23677877 886 78999999999999999999987655
Q ss_pred CC-cccHHHHHHHcc
Q 003623 671 SK-DVDLRALAKYTQ 684 (807)
Q Consensus 671 ~~-~~~~~~la~~~~ 684 (807)
.- +.-++.|++...
T Consensus 172 ~l~~ev~~~La~~~~ 186 (226)
T PRK09087 172 YVDPHVVYYLVSRME 186 (226)
T ss_pred CCCHHHHHHHHHHhh
Confidence 43 344667777654
No 263
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=5.5e-09 Score=119.06 Aligned_cols=181 Identities=21% Similarity=0.308 Sum_probs=117.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------E-EE
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-FC 272 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~-i~ 272 (807)
++.+.+|+++.|++..++.|+..+... ..+..+||+||+|+||||+|+.+|+.+++. + ..
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 456678999999999999998888641 123468999999999999999999988631 0 01
Q ss_pred Eechhhhh----------hhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc
Q 003623 273 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~~----------~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
.+|..+.. ......-..++.+.+.+. .....|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 11111110 000011233455544433 23456999999997742 233567777765
Q ss_pred cccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
.. ..+++|.+|+.++.+.+++++ |+ ..+.+..|+..+...++...++...+. ++..+..++..+.|
T Consensus 146 pp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 146 PP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred CC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 42 344555556667788888877 55 468999999999998888877655443 23346667776665
No 264
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=6.6e-10 Score=104.70 Aligned_cols=127 Identities=34% Similarity=0.472 Sum_probs=83.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHhCCe---EEEEeccchhhc--------------ccCCchHHHHHHHHHHHhCCCeE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCV 577 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~~~~---~i~v~~~~l~~~--------------~vg~se~~i~~lf~~a~~~~p~i 577 (807)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3569999999999999999999998765 777776654321 22344667888999999888899
Q ss_pred EEEcccchhhhhcCCCCCCCCccHHHHHHHH--HHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCC
Q 003623 578 LFFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 578 lfiDEid~l~~~r~~~~~~~~~~~~~v~~~l--L~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (807)
||+||++.+..... ....... ...........+..+|+++|......+..+++ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 99999999865421 0000000 00111112234568888888733344444443 89988888654
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=6.6e-09 Score=114.24 Aligned_cols=175 Identities=19% Similarity=0.186 Sum_probs=117.6
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeE-------------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 543 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~------------- 543 (807)
...+++|.|++.+++.|...+.. -+.+..+||+||+|+||+++|.++|+.+-+.-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45688999999999999887653 14456799999999999999999998762210
Q ss_pred EEEe-------------ccchhhcc---cCC--------chHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCC
Q 003623 544 ISVK-------------GPELLTMW---FGE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVG 595 (807)
Q Consensus 544 i~v~-------------~~~l~~~~---vg~--------se~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~ 595 (807)
+.+. -+|+.--. -+. .-..||.+-+.+ ....+.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0000 01111000 010 123455555443 33567899999999873
Q ss_pred CCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCccc
Q 003623 596 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD 675 (807)
Q Consensus 596 ~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~ 675 (807)
....|.||..++.. ..+.++|.+|+.++.+.|.+.+ |+. .+.|++|+.++..+++...... ..+..
T Consensus 155 ------~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 155 ------ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred ------HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 34578899998853 3456777788999989888876 886 8999999999998888775421 12222
Q ss_pred HHHHHHHccc
Q 003623 676 LRALAKYTQG 685 (807)
Q Consensus 676 ~~~la~~~~g 685 (807)
+..++..+.|
T Consensus 221 ~~~l~~~s~G 230 (365)
T PRK07471 221 RAALAALAEG 230 (365)
T ss_pred HHHHHHHcCC
Confidence 3566666655
No 266
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=5.6e-09 Score=118.28 Aligned_cols=175 Identities=20% Similarity=0.294 Sum_probs=118.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|+||.|.+..++.|+..+... ..+..+||+||||+|||++|+++|+.+...
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 456679999999999999998887641 234569999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHH
Q 003623 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
++.+++... . .-..++.+.+.. ......++||||+|.+.. ...+.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHH
Confidence 222332111 0 012233332222 224567999999998842 23466
Q ss_pred HHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCC
Q 003623 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 409 (807)
|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...++.... .++..+..++..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 777777643 355666677877889999987 65 46899999998888887766554332 233456777777765
No 267
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.05 E-value=3.7e-09 Score=119.66 Aligned_cols=169 Identities=15% Similarity=0.209 Sum_probs=109.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHH---HHHHHHHHHHhcCCeEEEEccchhhc
Q 003623 243 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES---NLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~---~i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
.+++|||++|+|||+|++++++.+ +..++++++.++...+...... .+....+. -..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 569999999999999999999865 3567889888877665443222 12111111 1346799999999885
Q ss_pred CCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCC---CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC
Q 003623 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~ 391 (807)
.+. .....|..+++.+......+|+++...|. .+++.|++.......+.+..|+.++|.+|++..++.
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 432 12234555555554444445554444554 357788873333567789999999999999988765
Q ss_pred CC---CCCchhHHHHHHhhCCCchhhHHHHHHHHH
Q 003623 392 MK---LSDDVDLERIAKDTHGYVGADLAALCTEAA 423 (807)
Q Consensus 392 ~~---l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 423 (807)
.. ..++.-+..++....|- .+.+..++....
T Consensus 291 ~gl~~~l~~evl~~Ia~~~~gd-~R~L~gaL~~l~ 324 (450)
T PRK14087 291 QNIKQEVTEEAINFISNYYSDD-VRKIKGSVSRLN 324 (450)
T ss_pred cCCCCCCCHHHHHHHHHccCCC-HHHHHHHHHHHH
Confidence 32 23344577788877763 445555555443
No 268
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.05 E-value=6.3e-09 Score=113.52 Aligned_cols=176 Identities=23% Similarity=0.277 Sum_probs=114.6
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEe
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-----~~i~v~ 274 (807)
++..+.+|+|+.|.++.++.++.++... ...+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3556678999999999999998887531 1236999999999999999999998732 344454
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh------cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEE
Q 003623 275 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 348 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~i~~if~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI 348 (807)
+++..+ ...++..+..... ..+.+++|||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332111 1112222222111 22459999999887321 124566666654443 3444
Q ss_pred EecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCCC
Q 003623 349 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 410 (807)
Q Consensus 349 ~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g~ 410 (807)
.+++.+..+.+.+++ |+. .++++.++.++...+++..++...+ .+...+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 466766777777776 553 5899999999998888877765443 2344577787777654
No 269
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.2e-09 Score=116.68 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=115.3
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC--------eEEEEeccc
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 550 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~--------~~i~v~~~~ 550 (807)
+|+++.|++.+++.+...+.. -..+..+||+||+|+|||++|+++|..+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 589999999999998887642 134556899999999999999999997632 22233221
Q ss_pred hhhcccCC--chHHHHHHHHHH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEe
Q 003623 551 LLTMWFGE--SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 551 l~~~~vg~--se~~i~~lf~~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi 624 (807)
.|. +-..++.+-+.+ ......|++||++|.+. ....|.||..|+.- ..++++|
T Consensus 69 -----~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEep--p~~t~~i 127 (313)
T PRK05564 69 -----NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEP--PKGVFII 127 (313)
T ss_pred -----cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCC--CCCeEEE
Confidence 111 123466665543 33445799999998873 23568899999853 3455555
Q ss_pred ecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHccc
Q 003623 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 625 ~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 685 (807)
.+|+.++.+-|.+.+ |+. .++|++|+.++....++..... + .+..+..++..+.|
T Consensus 128 l~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 128 LLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred EEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 666778999999987 885 9999999998888777655431 2 23335566666555
No 270
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=7.3e-09 Score=119.87 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=123.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|++..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456678999999999999998888641 224569999999999999999999998642
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+ ......+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 12222110 01123445544333 234456999999998732 234567
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++.. ...+++|.+|+.+..+.+++++ |+ ..+++..++.++....++..+....+. ++..+..++..+.|-
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd- 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS- 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 7777643 3456666677777889899887 65 357899999998888888766443332 344567777777763
Q ss_pred hhhHHHHH
Q 003623 412 GADLAALC 419 (807)
Q Consensus 412 ~~dl~~l~ 419 (807)
.+++..++
T Consensus 214 lR~alslL 221 (563)
T PRK06647 214 VRDAYTLF 221 (563)
T ss_pred HHHHHHHH
Confidence 33444443
No 271
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.03 E-value=1.1e-09 Score=120.69 Aligned_cols=125 Identities=25% Similarity=0.460 Sum_probs=81.7
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCCe-------EEEEe----ccchhhcc----cCCc--hHHHHHHHHHHHhC--C
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVK----GPELLTMW----FGES--EANVREIFDKARQS--A 574 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~~-------~i~v~----~~~l~~~~----vg~s--e~~i~~lf~~a~~~--~ 574 (807)
..++++|+||||||||++|+.+|..+... ++.+. ..+++..+ +|-. .....++.+.|... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 35679999999999999999999887431 22222 12333222 1111 11233455666653 4
Q ss_pred CeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC--------------------CCCCCcEEEeecCCCCC---
Q 003623 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------------------MSAKKTVFIIGATNRPD--- 631 (807)
Q Consensus 575 p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~--------------------~~~~~~v~vi~aTn~~~--- 631 (807)
|+++|||||++.. ..+++.++++.|+. +.-..++.||||.|..+
T Consensus 273 ~~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~ 339 (459)
T PRK11331 273 KYVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL 339 (459)
T ss_pred CcEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch
Confidence 7999999998743 23455555555542 22346899999999988
Q ss_pred -CCCccccCCCCCcceeecCC-CCH
Q 003623 632 -IIDPALLRPGRLDQLIYIPL-PDE 654 (807)
Q Consensus 632 -~ld~allrpgRf~~~i~~~~-p~~ 654 (807)
.+|.|++| ||. .|.+.+ ++.
T Consensus 340 ~~lD~AlrR--RF~-fi~i~p~~~~ 361 (459)
T PRK11331 340 AVVDYALRR--RFS-FIDIEPGFDT 361 (459)
T ss_pred hhccHHHHh--hhh-eEEecCCCCh
Confidence 89999999 996 566654 343
No 272
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=5.5e-09 Score=121.89 Aligned_cols=176 Identities=21% Similarity=0.314 Sum_probs=120.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|.++.++.|+..+... ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456678999999999999998887641 234568999999999999999999998642
Q ss_pred -------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 270 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 270 -------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 22233211 1112345666555432 2335999999998742 234678
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
+..|+... ..+++|.+|+.++.|.+.+++ |+ ..++|..++..+-...+...++...+. ++..+..++..+.|-
T Consensus 140 Lk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 140 LKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 88887643 356677777888899988887 54 457888888877777776655443322 344577777777763
No 273
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-08 Score=111.19 Aligned_cols=200 Identities=24% Similarity=0.356 Sum_probs=128.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEechhhh---
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIM--- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-----~i~v~~~~l~--- 279 (807)
+.+.+-+++++++..++.-.++. ..|.++++|||||||||.+++.+++++... +++|||....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34888999999998886543322 345569999999999999999999988544 7899985432
Q ss_pred -------hhh-----hch-hHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeE
Q 003623 280 -------SKL-----AGE-SESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (807)
Q Consensus 280 -------~~~-----~g~-~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (807)
.+. .|. ..+....+++.... ....|+++||+|.|....+ .++-.|..+.... ..++
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeE
Confidence 211 111 12233344444333 4567899999999987653 3444555554444 5678
Q ss_pred EEEEecCCCC---CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCC----CCCCchhHHHHH---HhhCCCchhhH
Q 003623 346 IVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----KLSDDVDLERIA---KDTHGYVGADL 415 (807)
Q Consensus 346 ~vI~atn~~~---~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~----~l~~~~~l~~la---~~t~g~~~~dl 415 (807)
.+|+.+|..+ .+|+.+.+.... .+|.|++.+.++-..|++...+.. .+.++ -+..+| ...+| ..+-.
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~G-DAR~a 234 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESG-DARKA 234 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCc-cHHHH
Confidence 8999998764 678888774333 348999999999999998776532 22222 233333 33343 22233
Q ss_pred HHHHHHHHHHHHHh
Q 003623 416 AALCTEAALQCIRE 429 (807)
Q Consensus 416 ~~l~~~a~~~~~~~ 429 (807)
..+|+.|+..+-++
T Consensus 235 idilr~A~eiAe~~ 248 (366)
T COG1474 235 IDILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHHhh
Confidence 45666666655444
No 274
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=4.3e-10 Score=110.42 Aligned_cols=112 Identities=27% Similarity=0.393 Sum_probs=76.5
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCC----eEEEEeccchhhcccCCchHHHHHHHHHH----HhCCCeEEEEcccch
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~----~~i~v~~~~l~~~~vg~se~~i~~lf~~a----~~~~p~ilfiDEid~ 585 (807)
|...+||+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+...+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4456999999999999999999999996 9999999987651 11122222222221 111113999999999
Q ss_pred hhhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCC
Q 003623 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP 630 (807)
Q Consensus 586 l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~ 630 (807)
..+..+ ...+-....+.+.||+.|++-. +.+++++|+|+|.-
T Consensus 80 a~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 987521 2223345678999999998631 23578999999974
No 275
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.5e-09 Score=110.85 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=76.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-hcccCCc-hHHHHHHHHHHHh----CCCeEEEEcccchhhhh
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKARQ----SAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-~~~vg~s-e~~i~~lf~~a~~----~~p~ilfiDEid~l~~~ 589 (807)
.++||.||+|+|||.||+.+|+.++.||...+|..|. ..|+|+. |.-|.++++.|.. ....|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999998876 4799986 5567777776532 33469999999999854
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCC
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGM 615 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~ 615 (807)
-.+.....+-...-|...||..++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 32221111223466889999999983
No 276
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.02 E-value=1.7e-08 Score=118.60 Aligned_cols=179 Identities=27% Similarity=0.443 Sum_probs=110.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFF 271 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l----------~~~~i 271 (807)
+.+-+|+++.|.+..++.+.+.+.. ..+.+++|+|||||||||+|+++.+.. +.+|+
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 4456889999999999888766543 224579999999999999999998765 34688
Q ss_pred EEechhhh-------hhhhchhHH----HHHHHHHH----------HHhcCCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 272 CINGPEIM-------SKLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 272 ~v~~~~l~-------~~~~g~~~~----~i~~if~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
.++|..+. ..+.+.... ..+..+.. .......+|||||++.+.+. ...
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQN 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HHH
Confidence 89886541 011111100 01111110 01123469999999877422 223
Q ss_pred HHHHHhhccc--------------------------cCCeEEEEE-ecCCCCCCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 331 QLLTLMDGLK--------------------------SRAHVIVIG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 331 ~Ll~~ld~~~--------------------------~~~~v~vI~-atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
.|+..++.-. ....+++|+ +++.+..++++|++ |+. .+.+++++.++...
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHH
Confidence 3333332210 122455555 55678889999987 775 67889999999999
Q ss_pred HHHHHhcCCCCC-CchhHHHHHHhh
Q 003623 384 VLRIHTKNMKLS-DDVDLERIAKDT 407 (807)
Q Consensus 384 Il~~~~~~~~l~-~~~~l~~la~~t 407 (807)
|++..+....+. .+.-+..++..+
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 999887654332 223344444443
No 277
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=5.5e-10 Score=118.89 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=95.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhh--hhchhHHH----------HHHHHHHHHhcCCeEEEE
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFI 307 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~--~~g~~~~~----------i~~if~~a~~~~p~il~i 307 (807)
..+++|||.||||||||++++.+|..++.+++.+++...... +.|...-. ....+-.|. ..+.++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999987554332 23321100 011222332 34678999
Q ss_pred ccchhhcCCcCCCchhHHHHHHHHHHHHhhc------------cccCCeEEEEEecCCCC------------CCCHHHHc
Q 003623 308 DEIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRR 363 (807)
Q Consensus 308 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~------------~~~~~~v~vI~atn~~~------------~ld~al~r 363 (807)
||++...++ +...|..+++. +..++.+.||||+|+.. .+++++..
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 999977432 22334444431 22345788999999854 45788887
Q ss_pred cCCcceEEEeCCCChhHHHHHHHHHhcC
Q 003623 364 FGRFDREIDIGVPDEVGRLEVLRIHTKN 391 (807)
Q Consensus 364 ~~Rf~~~i~i~~P~~~~R~~Il~~~~~~ 391 (807)
||...+.+..|+.+.-.+|+......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999998766433
No 278
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.02 E-value=2.2e-09 Score=126.94 Aligned_cols=155 Identities=24% Similarity=0.348 Sum_probs=103.9
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-------------------
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 539 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~------------------- 539 (807)
.|.+|.|++.++..|.-....+ ...++||+|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999988776543321 12469999999999999999999887
Q ss_pred ----------------CCeEEEEeccchhhcccCCc--hHHHH--------HHHHHHHhCCCeEEEEcccchhhhhcCCC
Q 003623 540 ----------------QANFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 540 ----------------~~~~i~v~~~~l~~~~vg~s--e~~i~--------~lf~~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
..+|+.+...-.....+|.- ++.++ -++..| .-.|||+|||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~----- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDD----- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCH-----
Confidence 24565554332222233321 11110 011111 224999999999743
Q ss_pred CCCCCccHHHHHHHHHHHHcCCC-----------CCCcEEEeecCCCC-CCCCccccCCCCCcceeecCCC-CHHHHHHH
Q 003623 594 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLP-DEESRLQI 660 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v~vi~aTn~~-~~ld~allrpgRf~~~i~~~~p-~~~~r~~I 660 (807)
.+++.||..|+.-. ...++++|+|+|.. ..+.++|+. ||+.+|.++.+ +.+++.+|
T Consensus 141 ---------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 141 ---------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred ---------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 46788888886321 12468999999954 368889998 99999999977 46888888
Q ss_pred HHHHh
Q 003623 661 FKACL 665 (807)
Q Consensus 661 l~~~l 665 (807)
++..+
T Consensus 210 l~~~~ 214 (633)
T TIGR02442 210 IRRRL 214 (633)
T ss_pred HHHHH
Confidence 87654
No 279
>PHA02244 ATPase-like protein
Probab=99.01 E-value=1.2e-08 Score=109.74 Aligned_cols=123 Identities=26% Similarity=0.352 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhc---hhHH-HHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---ESES-NLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g---~~~~-~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
..+.+|||+||||||||++|+++|..++.+++.+++..-.....| .... .-..++... ....+++|||++.+.+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p 194 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIP 194 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCH
Confidence 345689999999999999999999999999999885311111111 0000 001222222 3457999999997743
Q ss_pred CcCCCchhHHHHHHHHHHHHhh---------ccccCCeEEEEEecCCC-----------CCCCHHHHccCCcceEEEeCC
Q 003623 316 KREKTHGEVERRIVSQLLTLMD---------GLKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld---------~~~~~~~v~vI~atn~~-----------~~ld~al~r~~Rf~~~i~i~~ 375 (807)
. +...|..+++ .+....++.+|+|+|++ ..++++++. || ..+++..
T Consensus 195 ~-----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dy 260 (383)
T PHA02244 195 E-----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDY 260 (383)
T ss_pred H-----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCC
Confidence 2 2233444443 12234678999999973 467889987 88 4689999
Q ss_pred CCh
Q 003623 376 PDE 378 (807)
Q Consensus 376 P~~ 378 (807)
|..
T Consensus 261 p~~ 263 (383)
T PHA02244 261 DEK 263 (383)
T ss_pred CcH
Confidence 984
No 280
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.99 E-value=5e-09 Score=122.63 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=45.3
Q ss_pred eccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe
Q 003623 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 542 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~ 542 (807)
+..|..-|+++.|.+++++.+...+.. +++++|+||||||||+++++++..+...
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 346677899999999998888766542 2479999999999999999999998654
No 281
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.99 E-value=6.5e-09 Score=118.78 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|+|++|+|||||.+.|++..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456788999999999999999999999886
No 282
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=1.9e-08 Score=116.97 Aligned_cols=190 Identities=19% Similarity=0.192 Sum_probs=125.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN------ 274 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~------ 274 (807)
++.+-+|++|.|.+..++.|...+... ..+..+||+||+|+||||+|+++|+.+++.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 556678999999999999998887641 23567999999999999999999999865321111
Q ss_pred -------chhhhhh----------hhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHH
Q 003623 275 -------GPEIMSK----------LAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 275 -------~~~l~~~----------~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
|..+... .....-..++.+++.+.. ....|+||||+|.+.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 1111100 000113456667665542 2346999999998842 2346677
Q ss_pred HHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCch
Q 003623 334 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 412 (807)
Q Consensus 334 ~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 412 (807)
..|+.... .+.+|.+|+.++.+.+.+++ |+ ..+++..|+.++....+...++..... ++..+..++..+.|. .
T Consensus 154 KtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-l 227 (598)
T PRK09111 154 KTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-V 227 (598)
T ss_pred HHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 77776433 45555566777778888877 65 568999999998888887766544332 334567777777764 3
Q ss_pred hhHHHHH
Q 003623 413 ADLAALC 419 (807)
Q Consensus 413 ~dl~~l~ 419 (807)
.++..++
T Consensus 228 r~al~~L 234 (598)
T PRK09111 228 RDGLSLL 234 (598)
T ss_pred HHHHHHH
Confidence 3443433
No 283
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2e-08 Score=117.57 Aligned_cols=182 Identities=18% Similarity=0.248 Sum_probs=119.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-------E
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------I 273 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-------v 273 (807)
++....|+++.|.+..++.|..++... .-+.++||+||+|+|||++|+++|+.+.+.... -
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 456678999999999999998888641 123579999999999999999999998652110 0
Q ss_pred ech-----------hh--hhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHh
Q 003623 274 NGP-----------EI--MSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 336 (807)
Q Consensus 274 ~~~-----------~l--~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~l 336 (807)
.|. ++ ........-..++.++..+.. ....|+||||+|.+.. ...+.|+..+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~L 145 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTL 145 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHH
Confidence 000 00 001112234567777766542 2346999999998732 2346677777
Q ss_pred hccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCC
Q 003623 337 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 410 (807)
Q Consensus 337 d~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~ 410 (807)
+.. ...+++|.+|+.+..+-+.+++ |+ ..++|..+...+-...+...+.+..+. +...+..++..+.|-
T Consensus 146 EeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 146 EEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred hcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 753 2356666677778888888887 55 557888887777666665544432221 233467777777764
No 284
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.9e-08 Score=114.56 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=123.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 268 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~------------ 268 (807)
++.+.+|+++.|++..++.|+..+... ..+..+||+||+|+|||++|+++++.+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456778999999999999998887641 22456799999999999999999998742
Q ss_pred ------------cEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHH
Q 003623 269 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 269 ------------~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
.++.+++..- ..-..++.+.+.... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 1222222110 012345555544321 2235999999988742 234667
Q ss_pred HHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCc
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 411 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~ 411 (807)
+..++.... .+.+|.+|+.+..+.+.+++ |. ..+++..++.++-...+...+....+. ++..+..++..+.| .
T Consensus 138 LK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 888876533 45555566777889999988 64 578999999888877777665543322 34457777777776 3
Q ss_pred hhhHHHHHHHH
Q 003623 412 GADLAALCTEA 422 (807)
Q Consensus 412 ~~dl~~l~~~a 422 (807)
.+++..++..+
T Consensus 212 lR~alnlLdqa 222 (535)
T PRK08451 212 LRDTLTLLDQA 222 (535)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 285
>PRK06620 hypothetical protein; Validated
Probab=98.97 E-value=1.1e-08 Score=104.52 Aligned_cols=134 Identities=15% Similarity=0.242 Sum_probs=89.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCch
Q 003623 243 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 322 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~ 322 (807)
..++||||||||||+|++++++..+..++ ..... . ...+ ....+++|||++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----~------~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----N------EEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----c------hhHH-----hcCCEEEEeccccch--------
Confidence 67999999999999999999998775332 21110 0 0111 234689999999441
Q ss_pred hHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC--CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcC--CCCCCch
Q 003623 323 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDV 398 (807)
Q Consensus 323 ~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~--ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~--~~l~~~~ 398 (807)
. ..|..+++.+...+..++++++..|.. + ++|++.......+.+..|+.+.+..+++..+.. +.++ +.
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~-~e 170 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS-RQ 170 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC-HH
Confidence 0 235555555555666777777766654 5 788873333457899999999999999877653 3343 34
Q ss_pred hHHHHHHhhCCC
Q 003623 399 DLERIAKDTHGY 410 (807)
Q Consensus 399 ~l~~la~~t~g~ 410 (807)
-+..++.+..+-
T Consensus 171 v~~~L~~~~~~d 182 (214)
T PRK06620 171 IIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHHccCC
Confidence 477777777653
No 286
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=3.5e-09 Score=99.71 Aligned_cols=128 Identities=38% Similarity=0.510 Sum_probs=81.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEechhhhhh--------------hhchhHHHHHHHHHHHHhcCCeE
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 304 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~~~l~~~--------------~~g~~~~~i~~if~~a~~~~p~i 304 (807)
+.+++|+||||||||++++.++..+... ++.+++...... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999998775 777776543221 11234556778888888877899
Q ss_pred EEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC-CCCCCHHHHccCCcceEEEeCCC
Q 003623 305 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 376 (807)
Q Consensus 305 l~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~-~~~ld~al~r~~Rf~~~i~i~~P 376 (807)
+++||++.+......... ...................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL-----LLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH-----HhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988654311100 00000001111223445677788885 3344555554 77777776543
No 287
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=2.8e-08 Score=115.76 Aligned_cols=183 Identities=17% Similarity=0.242 Sum_probs=117.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE---------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------- 271 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i--------- 271 (807)
++.+.+|++|.|++..++.|+..+... .-+..+||+||+||||||+|+.+|+.+.+..-
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456778999999999999998877541 22456999999999999999999999876210
Q ss_pred --E-----Eechhhhh-------hhhc---hhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 272 --C-----INGPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 272 --~-----v~~~~l~~-------~~~g---~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
. -.|..+.. .+.+ ..-..++.+.+.. .....-+++|||+|.+.. ...+
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHH
Confidence 0 00000100 0011 1123455554443 223446999999988842 1245
Q ss_pred HHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHHHHhhCC
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~la~~t~g 409 (807)
.|+..++.... .+++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...++.... .++..+..++..+.|
T Consensus 146 aLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 67777776433 34444455667788888877 44 56889999888877777665543332 234457778888876
Q ss_pred Cc
Q 003623 410 YV 411 (807)
Q Consensus 410 ~~ 411 (807)
..
T Consensus 221 dl 222 (620)
T PRK14954 221 SM 222 (620)
T ss_pred CH
Confidence 43
No 288
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.1e-08 Score=114.77 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=112.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|++..++.|+.++... ..+..+||+||||+||||+|+++|+.+.+.
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 566778999999999999998887641 224569999999999999999999998652
Q ss_pred ---------------------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhH
Q 003623 270 ---------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEV 324 (807)
Q Consensus 270 ---------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~ 324 (807)
++.+++.. ...-..++.+.+.+. .....++||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------
Confidence 11111110 011234555444442 22346999999998842
Q ss_pred HHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCchhHHHH
Q 003623 325 ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERI 403 (807)
Q Consensus 325 ~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~~~l~~l 403 (807)
...+.|+..++... ...++|.+|+.+..+-+.+++ |. ..+++..++.++-...+...++.... .++..+..+
T Consensus 142 --~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 142 --AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred --HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12345666666432 244444455666778788876 44 35788888888777777665544332 233446677
Q ss_pred HHhhCCC
Q 003623 404 AKDTHGY 410 (807)
Q Consensus 404 a~~t~g~ 410 (807)
+..+.|.
T Consensus 215 ~~~s~g~ 221 (397)
T PRK14955 215 GRKAQGS 221 (397)
T ss_pred HHHcCCC
Confidence 7777653
No 289
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=3.2e-09 Score=114.49 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=122.6
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe----------EEEEec
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 548 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~----------~i~v~~ 548 (807)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999887531 345679999999999999999999885221 111122
Q ss_pred cchhhc---c--cCC--------------------chHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCc
Q 003623 549 PELLTM---W--FGE--------------------SEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGG 599 (807)
Q Consensus 549 ~~l~~~---~--vg~--------------------se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~ 599 (807)
+|+.-. | -|. .-..+|.+-+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 222200 0 011 0124566655543 34458999999998743
Q ss_pred cHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 003623 600 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRAL 679 (807)
Q Consensus 600 ~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 679 (807)
...|.||..|+.-. . .++|..|+.++.|-|.+.+ |+. .+.|++|+.++..++++........ +.+...+
T Consensus 139 ---~aaNaLLK~LEEPp--~-~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 139 ---AAANALLKTLEEPG--N-GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred ---HHHHHHHHHHhCCC--C-CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 35688999998654 3 3566677788999999998 985 9999999999999999876432211 1234677
Q ss_pred HHHcccCChhhHHHHHH
Q 003623 680 AKYTQGFSGADITEICQ 696 (807)
Q Consensus 680 a~~~~g~sg~di~~l~~ 696 (807)
+..+.|- ++...++++
T Consensus 208 ~~~a~Gs-~~~al~~l~ 223 (314)
T PRK07399 208 LALAQGS-PGAAIANIE 223 (314)
T ss_pred HHHcCCC-HHHHHHHHH
Confidence 7777664 333333333
No 290
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=2.7e-08 Score=105.78 Aligned_cols=188 Identities=20% Similarity=0.307 Sum_probs=114.7
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC-eEEE--Eec-----cchhh---cccCCc-----h-HHHHHHH----HHHHhCCC
Q 003623 517 GVLFYGPPGCGKTLLAKAIANECQA-NFIS--VKG-----PELLT---MWFGES-----E-ANVREIF----DKARQSAP 575 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~~~-~~i~--v~~-----~~l~~---~~vg~s-----e-~~i~~lf----~~a~~~~p 575 (807)
-++|+||+|+|||++++.+++.+.. .+.. +.. .+++. ...|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 2221 111 11110 111211 1 1122222 22345567
Q ss_pred eEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-C-CCcEEEeecCCCCC---CCC-c---cccCCCCCcce
Q 003623 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-A-KKTVFIIGATNRPD---IID-P---ALLRPGRLDQL 646 (807)
Q Consensus 576 ~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-~-~~~v~vi~aTn~~~---~ld-~---allrpgRf~~~ 646 (807)
.++++||++.+... .++.+ ..|-... . ...+.|+.+ ..|+ .+. + .+.+ |+...
T Consensus 125 ~vliiDe~~~l~~~--------------~~~~l-~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~ 186 (269)
T TIGR03015 125 ALLVVDEAQNLTPE--------------LLEEL-RMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIAS 186 (269)
T ss_pred eEEEEECcccCCHH--------------HHHHH-HHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeee
Confidence 89999999986321 12222 2222211 1 222222222 2332 222 1 2344 78888
Q ss_pred eecCCCCHHHHHHHHHHHhccCCC-----CCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 003623 647 IYIPLPDEESRLQIFKACLRKSPV-----SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENP 721 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~l~~~~~-----~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~ 721 (807)
+++++.+.++..+++...++..+. -.+..+..|++.+.|.. +.|..+|..+...|..+.
T Consensus 187 ~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~--------------- 250 (269)
T TIGR03015 187 CHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE--------------- 250 (269)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC---------------
Confidence 999999999999999988865432 23456788889998874 569999999988887653
Q ss_pred cccccccccccccccHHHHHHHHhhcC
Q 003623 722 EAMEEDVEDEVAEIKAVHFEESMKYAR 748 (807)
Q Consensus 722 ~~~~~~~~~~~~~v~~~~f~~al~~~~ 748 (807)
...|+.++++.++..+.
T Consensus 251 ----------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 ----------KREIGGEEVREVIAEID 267 (269)
T ss_pred ----------CCCCCHHHHHHHHHHhh
Confidence 23699999999988764
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.94 E-value=1.6e-08 Score=114.18 Aligned_cols=200 Identities=22% Similarity=0.296 Sum_probs=124.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHc---cccC--------------hhhHh----hhCCCCCceEEEEcCCCCcHHHHH
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVEL---PLRH--------------PQLFK----SIGVKPPKGILLYGPPGSGKTLIA 259 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~---~l~~--------------~~~~~----~l~i~~~~~vLL~GppGtGKTtLa 259 (807)
++.+-.|.|+.|-+..-+.+..++.. ...+ .+++. ..+-++.+-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 34445677888777766666555541 1111 11221 112234566999999999999999
Q ss_pred HHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHH
Q 003623 260 RAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL 335 (807)
Q Consensus 260 r~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 335 (807)
+.+|++.|..++.||+++-.+. .....++..+.+.- ...+|..|+|||||--. ...++.++.+
T Consensus 344 HViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvilsl 410 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILSL 410 (877)
T ss_pred HHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHHH
Confidence 9999999999999999874321 12223333333221 12679999999998432 3345556655
Q ss_pred hhc-------ccc---------CC---eEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCC
Q 003623 336 MDG-------LKS---------RA---HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 396 (807)
Q Consensus 336 ld~-------~~~---------~~---~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~ 396 (807)
+.. -.. +. .--||+.||+. .-|+|+-..-|...+.|..|......+-|+..+.+-.+..
T Consensus 411 v~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~ 488 (877)
T KOG1969|consen 411 VKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRA 488 (877)
T ss_pred HHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCC
Confidence 541 000 01 12378889865 5788987767889999999998887777777665544332
Q ss_pred -chhHHHHHHhhCCCchhhH
Q 003623 397 -DVDLERIAKDTHGYVGADL 415 (807)
Q Consensus 397 -~~~l~~la~~t~g~~~~dl 415 (807)
...+..+...|++-....|
T Consensus 489 d~~aL~~L~el~~~DIRsCI 508 (877)
T KOG1969|consen 489 DSKALNALCELTQNDIRSCI 508 (877)
T ss_pred CHHHHHHHHHHhcchHHHHH
Confidence 2346666666665444433
No 292
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.93 E-value=3.3e-08 Score=108.23 Aligned_cols=157 Identities=23% Similarity=0.394 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
+...++||||.|+|||+|++++++.. +..++++...++...+.......-..-|+.-. .-.+++||+++++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34679999999999999999998886 34577888777766555443333333455544 456999999999976
Q ss_pred CcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC---CHHHHccCCcceEEEeCCCChhHHHHHHHHHhc--
Q 003623 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK-- 390 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l---d~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~-- 390 (807)
+.. ....+...+..+...++-+++.+...|..+ .+.|++.......+.+.+|+.+.|..||+..+.
T Consensus 190 k~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 190 KER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred Chh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc
Confidence 532 224455555555555655666666667654 588888445566789999999999999998654
Q ss_pred CCCCCCchhHHHHHHhhCC
Q 003623 391 NMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 391 ~~~l~~~~~l~~la~~t~g 409 (807)
++.++++ -+..++.+...
T Consensus 261 ~~~i~~e-v~~~la~~~~~ 278 (408)
T COG0593 261 GIEIPDE-VLEFLAKRLDR 278 (408)
T ss_pred CCCCCHH-HHHHHHHHhhc
Confidence 3444444 35666666553
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.92 E-value=2e-08 Score=119.72 Aligned_cols=133 Identities=25% Similarity=0.346 Sum_probs=88.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhh------hhhhhchhHHH---HHHHHHHHHhcCCeEEEEccch
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI------MSKLAGESESN---LRKAFEEAEKNAPSIIFIDEID 311 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l------~~~~~g~~~~~---i~~if~~a~~~~p~il~iDEid 311 (807)
...++||.||..+|||+++..+|.+.|..|+.+|-.+- ++.|+.+.... -..++-+|.... -.+++||+.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 34579999999999999999999999999999987543 22222111110 112333343332 378899987
Q ss_pred hhcCCcCCCchhHHHHHHHHHHHHhhccc------------cCCeEEEEEecCCCC------CCCHHHHccCCcceEEEe
Q 003623 312 SIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVIGATNRPN------SIDPALRRFGRFDREIDI 373 (807)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------------~~~~v~vI~atn~~~------~ld~al~r~~Rf~~~i~i 373 (807)
..+ ..++..|..++|.-+ .++++.++||.|+|- .+..|+|. || .+++|
T Consensus 966 LAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hF 1031 (4600)
T COG5271 966 LAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHF 1031 (4600)
T ss_pred cCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhc
Confidence 443 235666777776432 456778889999884 45677776 77 45666
Q ss_pred CCCChhHHHHHHHHH
Q 003623 374 GVPDEVGRLEVLRIH 388 (807)
Q Consensus 374 ~~P~~~~R~~Il~~~ 388 (807)
.--.+.+...||+..
T Consensus 1032 ddipedEle~ILh~r 1046 (4600)
T COG5271 1032 DDIPEDELEEILHGR 1046 (4600)
T ss_pred ccCcHHHHHHHHhcc
Confidence 655667777777643
No 294
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.91 E-value=6.3e-10 Score=105.83 Aligned_cols=109 Identities=28% Similarity=0.464 Sum_probs=69.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh--hhhchhHHH-------HHHHHHHHHhcCCeEEEEccchhhc
Q 003623 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~--~~~g~~~~~-------i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
+|+|+||||||||++++.+|..++.+++.++++.... .+.|..... -..+.+.. ..++++||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 5899999999999999999999999998888754321 111110000 00000011 156899999998653
Q ss_pred CCcCCCchhHHHHHHHHHHHHhhccc-----------cCC------eEEEEEecCCCC----CCCHHHHccCCc
Q 003623 315 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 367 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~------~v~vI~atn~~~----~ld~al~r~~Rf 367 (807)
..+...|+.+++.-. ... ++.+|+|+|+.+ .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 335556666665311 111 389999999988 89999998 65
No 295
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.1e-08 Score=115.22 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=115.6
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 270 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------- 270 (807)
+++.+.+|++|.|+++.++.|+..+... ..+..+||+||+|+|||++|+.+|+.+++..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3566779999999999999998877641 2245689999999999999999999886421
Q ss_pred ----------------EEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHH
Q 003623 271 ----------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 271 ----------------i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
+.+++.. ...-..++.+.+.+.. ....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 1111110 0112334554443322 2346999999998742 2345
Q ss_pred HHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
.|+..++... ..+++|.+++..+.+.+.+++ |+ ..+++..++..+...++...+....+. ++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 345555566667777788876 54 457888888888888877665544332 33446677777765
No 296
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.89 E-value=8.9e-09 Score=109.52 Aligned_cols=66 Identities=33% Similarity=0.560 Sum_probs=45.5
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC--CeEEEEeccchhh
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 553 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~ 553 (807)
-+.++|+.++++..--.+.. .+. +.-.++++||.||||||||.||-++|.++| .||..++++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik~-~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IKE-GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HHT-T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------Hhc-ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 35678888887765443321 111 334578899999999999999999999996 7999999988864
No 297
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.89 E-value=8.3e-09 Score=111.57 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=99.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCC-------c--EEE
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP-KGILLYGPPGSGKTLIARAVANETGA-------F--FFC 272 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLar~la~~l~~-------~--~i~ 272 (807)
..+.|++|.|+++.+..+.-... .++ .|+||.|+||+||||+++++++.++. + +..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~ 68 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR 68 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc
Confidence 34678999999998887754321 123 57999999999999999999999842 1 111
Q ss_pred Eec-hhh--------hh---------------hhhch--hHHHH---HHHHHHH--HhcCCeEEEEccchhhcCCcCCCc
Q 003623 273 ING-PEI--------MS---------------KLAGE--SESNL---RKAFEEA--EKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 273 v~~-~~l--------~~---------------~~~g~--~~~~i---~~if~~a--~~~~p~il~iDEid~l~~~~~~~~ 321 (807)
+.+ ++. .. ...|. .+..+ +..|+.- ......+||+||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------ 142 (334)
T PRK13407 69 PEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------ 142 (334)
T ss_pred ccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH------
Confidence 110 000 00 01110 00000 0011110 001125899999998742
Q ss_pred hhHHHHHHHHHHHHhhccc-----------cCCeEEEEEecCCCC-CCCHHHHccCCcceEEEeCCCCh-hHHHHHHHHH
Q 003623 322 GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 388 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~~-~~R~~Il~~~ 388 (807)
.+...|+..|+.-. ...++++++++|+.+ .+.+++.. ||...+.++.|.. ++|.+|+...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 34566666665321 234688999988755 58888887 9999999998877 8899998764
No 298
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.89 E-value=3.2e-08 Score=111.80 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=143.8
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHh----------CCeEEEEeccchhh----------cccCCc------hHHHHHHHHHH
Q 003623 517 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLT----------MWFGES------EANVREIFDKA 570 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~----------~~~~i~v~~~~l~~----------~~vg~s------e~~i~~lf~~a 570 (807)
.+.+.|-||||||.++..+.+++ .+.|+.|++-.+.+ .+.|+. -..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 48899999999999999998865 36788888865543 233333 12334444421
Q ss_pred -HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccC--CCCCc-ce
Q 003623 571 -RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR--PGRLD-QL 646 (807)
Q Consensus 571 -~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allr--pgRf~-~~ 646 (807)
-...++|++|||.|.|...+ ..|+..|+..-- .++.+++||+..|..+....-|.. .+|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998752 234444433322 245689999999987765444431 13666 67
Q ss_pred eecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q 003623 647 IYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI--TEICQRACKYAIRENIEKDIERERRRSENPEAM 724 (807)
Q Consensus 647 i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~di--~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~ 724 (807)
|.|.+++.++..+|+...++....-.+.-++-+|+.-...||.-- ..+|++|...|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 899999999999999999987644344445555665555677443 358999998887776310
Q ss_pred ccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003623 725 EEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQT 765 (807)
Q Consensus 725 ~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~ 765 (807)
.......|+..|+.+|++.+..+.-...++...-..+.
T Consensus 636 ---k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~ 673 (767)
T KOG1514|consen 636 ---KLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKI 673 (767)
T ss_pred ---cccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHH
Confidence 11224568999999999888766655555544433333
No 299
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.3e-08 Score=110.33 Aligned_cols=148 Identities=20% Similarity=0.287 Sum_probs=102.3
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC------------------------eEEEEeccchhhcccCCchHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 568 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~lf~ 568 (807)
+.+..+||+||+|+|||++|+++|..+.+ .++.+...+- ++. -+-..+|++-+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 34567999999999999999999988643 1222221100 000 12345666655
Q ss_pred HHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCc
Q 003623 569 KAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (807)
Q Consensus 569 ~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (807)
.+. .....|++||++|.+.. ...|.||..|+.- ..++++|.+|+.++.|.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~--------------~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~ 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR--------------NAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH--------------HHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce
Confidence 543 34467999999999743 4578999999863 4578888999999999999998 998
Q ss_pred ceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHccc
Q 003623 645 QLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 685 (807)
.+.|++|+.++..+.+..... ...+.+...++..+.|
T Consensus 159 -~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 -QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGG 195 (328)
T ss_pred -eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCC
Confidence 599999999988888875531 1223344455555555
No 300
>PRK09087 hypothetical protein; Validated
Probab=98.88 E-value=3.8e-08 Score=101.39 Aligned_cols=140 Identities=24% Similarity=0.311 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCc
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~ 321 (807)
...++|+||+|||||+|+++++...+..+ ++..++... ++..... .+++|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC-----
Confidence 34599999999999999999998876543 333222111 1111111 47999999976311
Q ss_pred hhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC---CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCC-CCc
Q 003623 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDD 397 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l-~~~ 397 (807)
+ ..|.++++.+...++.++++++..|.. ..+.|++.......+++..|+.+.|.++++..+....+ .++
T Consensus 103 ---~----~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 ---E----TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred ---H----HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1 235666666666566777777665543 36778874444588999999999999999988765433 233
Q ss_pred hhHHHHHHhhCC
Q 003623 398 VDLERIAKDTHG 409 (807)
Q Consensus 398 ~~l~~la~~t~g 409 (807)
..+..++.+..+
T Consensus 176 ev~~~La~~~~r 187 (226)
T PRK09087 176 HVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHhhh
Confidence 447777777774
No 301
>PRK04132 replication factor C small subunit; Provisional
Probab=98.88 E-value=1.9e-08 Score=119.74 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=109.3
Q ss_pred ceeeeC--CCCCcHHHHHHHHHHHh-----CCeEEEEeccchhhcccCCchHHHHHHHHHHHhC------CCeEEEEccc
Q 003623 517 GVLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDEL 583 (807)
Q Consensus 517 giLL~G--ppGtGKT~la~alA~~~-----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~------~p~ilfiDEi 583 (807)
+-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 356678 99999999999999997 56899999988532 23566665543322 2369999999
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHH
Q 003623 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 663 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 663 (807)
|.|.. ...+.|+..|+.. ..++.+|++||.++.+-+++.+ |+. .+.|++|+.++....++.
T Consensus 640 D~Lt~--------------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALTQ--------------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccCCH--------------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHH
Confidence 99843 2467888888853 3467888899999999999987 985 899999999998888888
Q ss_pred HhccCCCC-CcccHHHHHHHccc
Q 003623 664 CLRKSPVS-KDVDLRALAKYTQG 685 (807)
Q Consensus 664 ~l~~~~~~-~~~~~~~la~~~~g 685 (807)
.+.+.++. ++..+..++..++|
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC
Confidence 77665543 34557777776655
No 302
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.86 E-value=1.2e-09 Score=108.57 Aligned_cols=139 Identities=29% Similarity=0.462 Sum_probs=66.3
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC----e------EEEEec-
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----N------FISVKG- 548 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~----~------~i~v~~- 548 (807)
|.+|.|++.+|+.|.-... | ..++||+||||||||++|+.+...+-. . ..++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6899999999998876543 2 358999999999999999999987521 0 000000
Q ss_pred ---------cchhhcccCCchHHHHHHH-----------HHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHH
Q 003623 549 ---------PELLTMWFGESEANVREIF-----------DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 608 (807)
Q Consensus 549 ---------~~l~~~~vg~se~~i~~lf-----------~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~l 608 (807)
.-+....-..++ ..++ ..|.. .|||+||+-.+ .+++++.|
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~L 126 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDAL 126 (206)
T ss_dssp S---EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHH
Confidence 000000000111 1111 12222 59999998654 46789999
Q ss_pred HHHHcCCC-----------CCCcEEEeecCCC-----------------------CCCCCccccCCCCCcceeecCCCCH
Q 003623 609 LTEMDGMS-----------AKKTVFIIGATNR-----------------------PDIIDPALLRPGRLDQLIYIPLPDE 654 (807)
Q Consensus 609 L~~ld~~~-----------~~~~v~vi~aTn~-----------------------~~~ld~allrpgRf~~~i~~~~p~~ 654 (807)
+.-|+.-. -..++++|+|+|. ...|...++. |||..+.++..+.
T Consensus 127 r~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 127 RQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHHHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 99997531 1136789999984 1255666776 8888888887665
Q ss_pred H
Q 003623 655 E 655 (807)
Q Consensus 655 ~ 655 (807)
+
T Consensus 205 ~ 205 (206)
T PF01078_consen 205 E 205 (206)
T ss_dssp -
T ss_pred C
Confidence 4
No 303
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=1.2e-09 Score=99.46 Aligned_cols=104 Identities=30% Similarity=0.427 Sum_probs=60.4
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCCeEEEEecc-chh-----hccc-CC-c---hHHHHHHHHHHHhCCCeEEEEcccch
Q 003623 517 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-----TMWF-GE-S---EANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~~~~~i~v~~~-~l~-----~~~v-g~-s---e~~i~~lf~~a~~~~p~ilfiDEid~ 585 (807)
++||.|+||+|||++|+++|..++..|.+|.+. +++ +..+ .. + +-.-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988763 443 1111 11 0 11112233 24999999977
Q ss_pred hhhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCCC-----CCCccccCCCCC
Q 003623 586 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD-----IIDPALLRPGRL 643 (807)
Q Consensus 586 l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~~-----~ld~allrpgRf 643 (807)
. ..++.+.||..|..-. -.+.++||||-|..+ .|+.|++. ||
T Consensus 74 a--------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A--------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S---------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C--------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3 4567888888886421 134689999999876 77788887 77
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.9e-08 Score=108.49 Aligned_cols=125 Identities=29% Similarity=0.414 Sum_probs=91.6
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhC------------------------CeEEEEeccchhhcccCCchHHHHHHHHHHHh
Q 003623 517 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 572 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~~------------------------~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~ 572 (807)
.+||+||||+|||++|.++|+.+. ..++.++.++....- .....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999986 577888777654321 123445555444332
Q ss_pred ----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceee
Q 003623 573 ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 573 ----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~ 648 (807)
....|+++||+|.+.. ...+.++..|+. ...+..+|.+||.++.+-+.+.+ |+. .+.
T Consensus 104 ~~~~~~~kviiidead~mt~--------------~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 3468999999999854 356788888874 45567888899999988888877 886 788
Q ss_pred cCCCCHHHHHHHHH
Q 003623 649 IPLPDEESRLQIFK 662 (807)
Q Consensus 649 ~~~p~~~~r~~Il~ 662 (807)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 88876655544444
No 305
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.1e-08 Score=112.79 Aligned_cols=194 Identities=23% Similarity=0.313 Sum_probs=129.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--------EE
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FC 272 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--------i~ 272 (807)
++.+-.|+|+.|.+...+.|...+..- .-....|+.||.||||||+||.+|+.+++.- ..
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 456678999999999999999988752 2234789999999999999999999987642 01
Q ss_pred Eechhhh----------hhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc
Q 003623 273 INGPEIM----------SKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 338 (807)
Q Consensus 273 v~~~~l~----------~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~ 338 (807)
..|..+. +.-....-..+|.+.+.+. ....-|.+|||+|.+.. ...+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc
Confidence 1111111 1111122345666666653 34557999999998842 345666666654
Q ss_pred cccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCCCchhhHHH
Q 003623 339 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 417 (807)
Q Consensus 339 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 417 (807)
....|.+|.+|..+..+++.+.+ |+ ..+.+...+.++-...|...+.+-.+. ++..+..+++..+| +.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 33468888888888999988876 44 335667777777777777666554444 34456777777776 3456655
Q ss_pred HHHHHH
Q 003623 418 LCTEAA 423 (807)
Q Consensus 418 l~~~a~ 423 (807)
++..+.
T Consensus 220 lLDq~i 225 (515)
T COG2812 220 LLDQAI 225 (515)
T ss_pred HHHHHH
Confidence 555443
No 306
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.6e-07 Score=102.75 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=115.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEE--
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 273 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-------~i~v-- 273 (807)
.+..+++|.|+++.++.|...+... .-+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4457788999999999998887652 223469999999999999999999987541 1000
Q ss_pred --ech-----------hhh---hh--h------hchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHH
Q 003623 274 --NGP-----------EIM---SK--L------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE 325 (807)
Q Consensus 274 --~~~-----------~l~---~~--~------~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~ 325 (807)
.|. ++. .. . ..-.-..++.+.+.. ......|++|||+|.+..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 010 100 00 0 000112344433322 234456999999998832
Q ss_pred HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHH
Q 003623 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 405 (807)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~ 405 (807)
...+.|+..++.... +.++|..|+.++.+.|.+++ |+ ..+.+++|+.++-..+|........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 234568888876443 44545556778888899987 77 6899999999999999886432222 22333566667
Q ss_pred hhCCCch
Q 003623 406 DTHGYVG 412 (807)
Q Consensus 406 ~t~g~~~ 412 (807)
.+.|-..
T Consensus 229 ~s~G~pr 235 (351)
T PRK09112 229 RSKGSVR 235 (351)
T ss_pred HcCCCHH
Confidence 6666543
No 307
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.83 E-value=2.9e-08 Score=108.68 Aligned_cols=128 Identities=30% Similarity=0.439 Sum_probs=87.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh--hhhchhHHHHH------------HHHHHHHhcCCeEEE
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNLR------------KAFEEAEKNAPSIIF 306 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~--~~~g~~~~~i~------------~if~~a~~~~p~il~ 306 (807)
.+.++||-||||||||++++.+|..++.+++.++|..... ...|...-... -+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3679999999999999999999999999999999854221 11221111110 0111111 4999
Q ss_pred EccchhhcCCcCCCchhHHHHHHHHHHHHhhc----------cccCCeEEEEEecCC-----CCCCCHHHHccCCcceEE
Q 003623 307 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREI 371 (807)
Q Consensus 307 iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~----------~~~~~~v~vI~atn~-----~~~ld~al~r~~Rf~~~i 371 (807)
+|||+...+ .+.+.|+..|+. +.-...+++++|+|+ ...+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999987643 345667777764 334467888888894 3467899998 998889
Q ss_pred EeCCCChhHHHHHH
Q 003623 372 DIGVPDEVGRLEVL 385 (807)
Q Consensus 372 ~i~~P~~~~R~~Il 385 (807)
.++.|+.++-..++
T Consensus 185 ~v~yp~~~~e~~~i 198 (329)
T COG0714 185 YVDYPDSEEEERII 198 (329)
T ss_pred ecCCCCchHHHHHH
Confidence 99999554433333
No 308
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.83 E-value=4e-08 Score=108.59 Aligned_cols=141 Identities=26% Similarity=0.400 Sum_probs=83.8
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----E--EEEec----
Q 003623 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----F--FCING---- 275 (807)
Q Consensus 207 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~-----~--i~v~~---- 275 (807)
++++.+-+..++.+...+. .+++++|+||||||||++|+.+|..+... + +.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3445555555555544432 35789999999999999999999987531 1 22221
Q ss_pred hhhhhhhh----ch--hHHHHHHHHHHHHh--cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhh----------
Q 003623 276 PEIMSKLA----GE--SESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---------- 337 (807)
Q Consensus 276 ~~l~~~~~----g~--~~~~i~~if~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld---------- 337 (807)
.+++..+. |- ....+..+.+.|.. ..|.++||||++..-... +...++.+++
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccccccce
Confidence 22322111 10 01123334455544 357999999998653221 1222222222
Q ss_pred ----------ccccCCeEEEEEecCCCC----CCCHHHHccCCcceEEEeCC
Q 003623 338 ----------GLKSRAHVIVIGATNRPN----SIDPALRRFGRFDREIDIGV 375 (807)
Q Consensus 338 ----------~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~i~~ 375 (807)
.+.-..++.||||+|..+ .+|.||+| ||.. +++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 233346899999999887 78999999 7733 55543
No 309
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.82 E-value=1.3e-07 Score=110.69 Aligned_cols=133 Identities=22% Similarity=0.298 Sum_probs=91.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHhCC--eEEEEeccchhhcccCCch--HHHH---H-----HHHHHHhCCCeEEEEcc
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR---E-----IFDKARQSAPCVLFFDE 582 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~~~--~~i~v~~~~l~~~~vg~se--~~i~---~-----lf~~a~~~~p~ilfiDE 582 (807)
-.++||.|+||||||++|++++..+.. +|+.+.........+|... ..+. . ++..| .-.+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 356999999999999999999998754 5888764322223333210 0000 0 01111 124999999
Q ss_pred cchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCCcEEEeecCCCCC---CCCccccCCCCCcceee
Q 003623 583 LDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIY 648 (807)
Q Consensus 583 id~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~---~ld~allrpgRf~~~i~ 648 (807)
|+.+. ..+.+.|+..|+.-. -..++.||+|+|..+ .|.++++. ||+.+|.
T Consensus 93 i~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~ 156 (589)
T TIGR02031 93 ANLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVS 156 (589)
T ss_pred hhhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeee
Confidence 99874 346788888886321 113678999999865 78899998 9999888
Q ss_pred cC-CCCHHHHHHHHHHHhc
Q 003623 649 IP-LPDEESRLQIFKACLR 666 (807)
Q Consensus 649 ~~-~p~~~~r~~Il~~~l~ 666 (807)
+. +|+.++|.+|++..+.
T Consensus 157 ~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 157 LEDVASQDLRVEIVRRERC 175 (589)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 86 4578889999988763
No 310
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.4e-08 Score=110.77 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=104.4
Q ss_pred ccccccc-hhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe---------------
Q 003623 479 NWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 542 (807)
Q Consensus 479 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~--------------- 542 (807)
.|+.|.| ++.+.+.|...+.. -..+..+||+||+|+|||++|+++|..+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778777 88888888877642 1345668999999999999999999886321
Q ss_pred ---------EEEEeccchhhcccCCchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHH
Q 003623 543 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 543 ---------~i~v~~~~l~~~~vg~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
+..+... +.. -+-..++.+-+.+. .....|++|||+|.+. ....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHH
Confidence 2222110 000 11235565555443 2345699999998873 33578899
Q ss_pred HHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHH
Q 003623 610 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKA 663 (807)
Q Consensus 610 ~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 663 (807)
..|+.. ...+++|.+|+.++.|-|.+.+ |+. .++|++|+.++..++++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 999963 4456666788888899999987 886 899999999888777754
No 311
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.81 E-value=3.5e-08 Score=112.52 Aligned_cols=144 Identities=25% Similarity=0.388 Sum_probs=88.7
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--EEEEeccchh---
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELL--- 552 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~--~i~v~~~~l~--- 552 (807)
..|+++.|++.+++.+.-.+ ....+++|+||||||||++++++++.+... -..+....+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36788999888876654432 234569999999999999999999754210 0111111110
Q ss_pred -----------------------hcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHH
Q 003623 553 -----------------------TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 553 -----------------------~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
...+|.....-.-.+..|.. .+|||||++.+. ..+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~--------------~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK--------------RSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC--------------HHHHHHHH
Confidence 00011110000012333332 599999998763 34677777
Q ss_pred HHHcCCC-----------CCCcEEEeecCCCC------C-----------------CCCccccCCCCCcceeecCCCCHH
Q 003623 610 TEMDGMS-----------AKKTVFIIGATNRP------D-----------------IIDPALLRPGRLDQLIYIPLPDEE 655 (807)
Q Consensus 610 ~~ld~~~-----------~~~~v~vi~aTn~~------~-----------------~ld~allrpgRf~~~i~~~~p~~~ 655 (807)
+.|+.-. ...++.+|+|+|.- + .|...|+. |||.++.++.++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7775421 12468899999862 1 47788888 99999999987654
No 312
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.81 E-value=3.9e-08 Score=96.94 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=86.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CC----cEEEEe
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GA----FFFCIN 274 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~----~~i~v~ 274 (807)
+++.+..+.||+|.++.++++.-+..- ..-.+++|.|||||||||-+.++|.++ |. -++.+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 356677889999999999998766543 223479999999999999999999886 32 246667
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHhcCC---eEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEec
Q 003623 275 GPEIMSKLAGESESNLRKAFEEAEKNAP---SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~i~~if~~a~~~~p---~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (807)
+++-.+ ......+++..-|.-....| .|+++||.|++... ....|...|+-+....++ ..+|
T Consensus 86 ASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRF--alaC 150 (333)
T KOG0991|consen 86 ASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRF--ALAC 150 (333)
T ss_pred Cccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchh--hhhh
Confidence 655321 11122333332222222222 59999999987421 224455566655544444 4478
Q ss_pred CCCCCCCHHHHc
Q 003623 352 NRPNSIDPALRR 363 (807)
Q Consensus 352 n~~~~ld~al~r 363 (807)
|..+.|-+.+.+
T Consensus 151 N~s~KIiEPIQS 162 (333)
T KOG0991|consen 151 NQSEKIIEPIQS 162 (333)
T ss_pred cchhhhhhhHHh
Confidence 887777665554
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.80 E-value=1.3e-08 Score=113.38 Aligned_cols=136 Identities=18% Similarity=0.275 Sum_probs=81.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC--eEEEEecc-chhhcccCCc-hHHH--HHHHHHHHhC---CCeEEEEccc
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDEL 583 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~--~~i~v~~~-~l~~~~vg~s-e~~i--~~lf~~a~~~---~p~ilfiDEi 583 (807)
....++||+||||||||++|++++..++. +|..+.+. ..-...+|.. -... ..-|...... ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 34567999999999999999999997643 34333221 0111222321 0111 1122222111 2349999999
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------CCCcEEEeecCCCC-C--CCCccccCCCCCcceeecCCC
Q 003623 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRP-D--IIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--------~~~~v~vi~aTn~~-~--~ld~allrpgRf~~~i~~~~p 652 (807)
..+ ...+.+.||..|..-. .....++++|||.. + ...+|++- ||-..|.+|+|
T Consensus 117 ~ra--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 117 WKA--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred ccC--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 754 3567888999884321 11223455555742 2 23458887 99889999999
Q ss_pred C-HHHHHHHHHHH
Q 003623 653 D-EESRLQIFKAC 664 (807)
Q Consensus 653 ~-~~~r~~Il~~~ 664 (807)
+ .++-.+|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 7 56667788654
No 314
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.79 E-value=6.5e-08 Score=108.77 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGA 268 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~ 268 (807)
+.+.+++-+.|+|.+||||||++++|-+.+..
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCC
Confidence 34678999999999999999999999777643
No 315
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.79 E-value=4.6e-07 Score=90.26 Aligned_cols=168 Identities=22% Similarity=0.315 Sum_probs=116.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechh
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 277 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~ 277 (807)
.++.+.+.+|.|++.+++.|.+--..- .+ -.|..+|||+|..|||||+|++++-++. +...+.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F------~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQF------AE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHH------Hc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 345678899999999998885433221 11 1456789999999999999999998876 45578888776
Q ss_pred hhhhhhchhHHHHHHHHHHHHh-cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc-cccC-CeEEEEEecCCC
Q 003623 278 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSR-AHVIVIGATNRP 354 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~-~~v~vI~atn~~ 354 (807)
+.. +-.+++..+. ...-|||+|++-+=- + ..-...|-..++| +..+ .+|+|-+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------G---DDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------C---chHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 2334444333 345799999975421 1 1123456666665 3333 479999999987
Q ss_pred CCCCHH--------------------HHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCC
Q 003623 355 NSIDPA--------------------LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 396 (807)
Q Consensus 355 ~~ld~a--------------------l~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~ 396 (807)
..++.. +.-..||..-+.|..++.++-+.|+..+++.+.+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 554321 222469999999999999999999999988877664
No 316
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.78 E-value=1.9e-08 Score=98.77 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEechhhhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchh
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDS 312 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~----~~i~v~~~~l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~ 312 (807)
|-..+||+||+|||||.+|+++|..+.. +++.++++++... ++....+...+..+ ......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457999999999999999999999995 8999998877551 01111111111111 111123999999999
Q ss_pred hcCCcCCCchhHHHHHHHHHHHHhhccc---------cCCeEEEEEecCCC
Q 003623 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRP 354 (807)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~atn~~ 354 (807)
+.+......+.....+.+.|+..+++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886433334444567788888886421 12468899898865
No 317
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=2.2e-07 Score=108.94 Aligned_cols=175 Identities=20% Similarity=0.291 Sum_probs=119.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 269 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~----------- 269 (807)
++.+.+|++|.|.+..++.|...+... ..+..+|||||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 456779999999999999998887641 224569999999999999999999987532
Q ss_pred --------------EEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHH
Q 003623 270 --------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~ 331 (807)
++.+++.+ ......++.+...+.. ...-+++|||+|.+.. ...+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence 12222211 1113446666655432 2235999999998832 23466
Q ss_pred HHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHHHhhCC
Q 003623 332 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 409 (807)
Q Consensus 332 Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la~~t~g 409 (807)
|+..++.... .+++|.+|+.+..+-+.+++ |. ..+++..++..+-...+...+....+. +...+..++..+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788876433 34555566666788899887 55 458899998888887777665544443 23346777777765
No 318
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.78 E-value=6.7e-08 Score=104.17 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=106.2
Q ss_pred cc-cccchhhhhhhhhhcccccCCChhhhhhhcCC-CCcceeeeCCCCCcHHHHHHHHHHHhCC-------eEEEEec--
Q 003623 480 WE-DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG-- 548 (807)
Q Consensus 480 ~~-~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~giLL~GppGtGKT~la~alA~~~~~-------~~i~v~~-- 548 (807)
|+ ++.|+++++..+.+.+.... .|.. ..+.++|+||||||||+||++|++.++. +++.+++
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 44 89999999888876654321 1222 3456899999999999999999999865 8888877
Q ss_pred --cchhhcccCCchHHHHHHHHHHHh------------------------------------------------------
Q 003623 549 --PELLTMWFGESEANVREIFDKARQ------------------------------------------------------ 572 (807)
Q Consensus 549 --~~l~~~~vg~se~~i~~lf~~a~~------------------------------------------------------ 572 (807)
+.+....++-....+|..|.....
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 444332222222222222222110
Q ss_pred ----------------------------------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--
Q 003623 573 ----------------------------------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-- 616 (807)
Q Consensus 573 ----------------------------------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-- 616 (807)
..-.|+-|+|+.+ ....+++.||+.++...
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K--------------~~~~~l~~LL~~~qE~~v~ 266 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFK--------------ADIKFLHPLLTATQEGNIK 266 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhc--------------CCHHHHHHHhhhhhcceEe
Confidence 0012333333333 23468889999887531
Q ss_pred --C-----CCcEEEeecCCCCC-------CCCccccCCCCCcceeecCCC-CHHHHHHHHHHHhccC
Q 003623 617 --A-----KKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEESRLQIFKACLRKS 668 (807)
Q Consensus 617 --~-----~~~v~vi~aTn~~~-------~ld~allrpgRf~~~i~~~~p-~~~~r~~Il~~~l~~~ 668 (807)
+ .-..+||++||..+ ...+||++ ||. .|++|.| +..+-.+|.+..+...
T Consensus 267 ~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 267 GTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 1 12368999999873 55789998 998 8999977 6777789998888653
No 319
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.78 E-value=2.9e-08 Score=107.55 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=100.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEE-Ee
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN 274 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~-v~ 274 (807)
.-..|++|.|+++.+..|......| ...+|||.|++|||||+++|+++..+.. +|.. .+
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3458999999999888876555432 2348999999999999999999887642 1110 00
Q ss_pred chh-----hhhhh-------------------hchhHHH------HHHHHHHHH---------hcCCeEEEEccchhhcC
Q 003623 275 GPE-----IMSKL-------------------AGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 275 ~~~-----l~~~~-------------------~g~~~~~------i~~if~~a~---------~~~p~il~iDEid~l~~ 315 (807)
.++ ..+.. .+.++.. +...|.... .....+||+||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 001 00000 0111111 111121111 11236999999998853
Q ss_pred CcCCCchhHHHHHHHHHHHHhhcc-----------ccCCeEEEEEecCCCC-CCCHHHHccCCcceEEEeCCCC-hhHHH
Q 003623 316 KREKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRL 382 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~-~~~R~ 382 (807)
. +...|+..|+.- ....+++++++.|+.+ .+.+++.. ||...+.+..|. .+.+.
T Consensus 159 ~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 H-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHH
Confidence 2 344566665431 1234688888888665 68899887 999999999998 59999
Q ss_pred HHHHHH
Q 003623 383 EVLRIH 388 (807)
Q Consensus 383 ~Il~~~ 388 (807)
+|++..
T Consensus 226 ~il~~~ 231 (350)
T CHL00081 226 KIVEQR 231 (350)
T ss_pred HHHHhh
Confidence 999754
No 320
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.77 E-value=4.1e-08 Score=106.51 Aligned_cols=157 Identities=24% Similarity=0.367 Sum_probs=96.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cE--------
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FF-------- 270 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~-------- 270 (807)
.|..|+|+++.+..+.-.+.-| ...+++|.|+||+||||+++++++.+.. ++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5778999999887764333221 2457999999999999999999988732 11
Q ss_pred -EEEechhh----------------hh--------hhhchh--HHHHH---HHHHH--HHhcCCeEEEEccchhhcCCcC
Q 003623 271 -FCINGPEI----------------MS--------KLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKRE 318 (807)
Q Consensus 271 -i~v~~~~l----------------~~--------~~~g~~--~~~i~---~if~~--a~~~~p~il~iDEid~l~~~~~ 318 (807)
+..+|... .. ...|.. ...++ ..|+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 00111100 00 111110 00000 00110 0011236999999998742
Q ss_pred CCchhHHHHHHHHHHHHhhccc-----------cCCeEEEEEecCCCC-CCCHHHHccCCcceEEEeCCCCh-hHHHHHH
Q 003623 319 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVL 385 (807)
Q Consensus 319 ~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~~-~~R~~Il 385 (807)
.+...|+..|+.-. ...++++++++|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 34455666664311 124678888888655 68889987 9999999999976 8889998
Q ss_pred HHH
Q 003623 386 RIH 388 (807)
Q Consensus 386 ~~~ 388 (807)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 754
No 321
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.77 E-value=4.1e-08 Score=113.39 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=96.4
Q ss_pred ccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC-eEEEE---eccchhhc----
Q 003623 483 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISV---KGPELLTM---- 554 (807)
Q Consensus 483 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~-~~i~v---~~~~l~~~---- 554 (807)
|.|.+.+|..+.-.+...... ..-....+....++||+|+||||||++|++++..+.. .|... ++..+...
T Consensus 205 i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 567777777665443221110 0001112233346999999999999999999998753 33321 11112110
Q ss_pred -ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCCcEE
Q 003623 555 -WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 622 (807)
Q Consensus 555 -~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v~ 622 (807)
..|+..-.-.. +..| ...++++||++.+.. .....|+..|+.-. -..++.
T Consensus 284 ~~~g~~~~~~G~-l~~A---~~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 284 PETREFTLEGGA-LVLA---DNGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred cCcceEEecCcc-EEec---CCCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 01110000001 1122 235999999999743 34556666665321 124678
Q ss_pred EeecCCCCC-------------CCCccccCCCCCcceeec-CCCCHHHHHHHHHHHhc
Q 003623 623 IIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEESRLQIFKACLR 666 (807)
Q Consensus 623 vi~aTn~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~l~ 666 (807)
||||+|..+ .|++++++ |||.+..+ +.|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999752 68999998 99976555 68999999999988654
No 322
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.76 E-value=1.3e-07 Score=94.78 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=92.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a 297 (807)
+..+||+||+|+|||++++.+++.+... +..+... +. ...-..++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4579999999999999999999987432 1111110 00 01124455555554
Q ss_pred Hh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEe
Q 003623 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i 373 (807)
.. ....+++|||+|.+... ..+.|+..++.... ...+|.+++.+..+.+++++ |+ ..+++
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 33 34569999999887421 24567777776432 34455556677899999988 55 57999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCC
Q 003623 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 374 ~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g 409 (807)
..|+.++...++... + + ++..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--I-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--C-CHHHHHHHHHHcCC
Confidence 999999988888765 2 2 23345566665554
No 323
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.72 E-value=1.4e-06 Score=100.17 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=55.5
Q ss_pred cCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh--------------ccc--------------CCc
Q 003623 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MWF--------------GES 559 (807)
Q Consensus 511 ~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~--------------~~v--------------g~s 559 (807)
|+.+...+|+.||||+|||+|+-.++... +-+.+.+...+-.. .|. ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777779999999999999999888754 44556665433211 000 001
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003623 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 560 e~~i~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45667777788888899999999988754
No 324
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4e-07 Score=98.81 Aligned_cols=240 Identities=20% Similarity=0.257 Sum_probs=146.9
Q ss_pred ccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----C-CeEEEEeccchh-----
Q 003623 483 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----Q-ANFISVKGPELL----- 552 (807)
Q Consensus 483 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----~-~~~i~v~~~~l~----- 552 (807)
+.|-+.-...+++++..++ ....++++.+.|.||||||.+..-+-... . ...+++++..+.
T Consensus 152 l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 3444544555555544322 33566779999999999999888554332 2 244777776532
Q ss_pred -----hcc----cC-CchHHHHHHHHHHHhC--CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCc
Q 003623 553 -----TMW----FG-ESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (807)
Q Consensus 553 -----~~~----vg-~se~~i~~lf~~a~~~--~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~ 620 (807)
+.+ ++ .++......|+..... .+-++++||+|.|+.++. +++-+ |-++..+ .+.+
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~-lFewp~l-p~sr 289 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-----------TVLYT-LFEWPKL-PNSR 289 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-----------ceeee-ehhcccC-Ccce
Confidence 112 11 2233444556554433 367999999999985421 12222 2233333 3568
Q ss_pred EEEeecCCCCCCCCccccC----CCCCcceeecCCCCHHHHHHHHHHHhccCCCCCc--ccHHHHHHHcccCChhhHH--
Q 003623 621 VFIIGATNRPDIIDPALLR----PGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKD--VDLRALAKYTQGFSGADIT-- 692 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allr----pgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~--~~~~~la~~~~g~sg~di~-- 692 (807)
+++||..|..|.-|..|.| -+--...+.|+||+.++..+||+..+...+.... ..++.+|+...+.|| |++
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRka 368 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKA 368 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHH
Confidence 8999999998877766642 1233478999999999999999999988765543 346778888888887 444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHH
Q 003623 693 -EICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDA 754 (807)
Q Consensus 693 -~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~ 754 (807)
.+|+.|...+..+.-.. ......+-+...+...|..+|+..++.++-.+-+..
T Consensus 369 Ldv~R~aiEI~E~e~r~~---------~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~ 422 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKI---------LDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSAR 422 (529)
T ss_pred HHHHHHHHHHHHHHHhhc---------cccCCCCCCCcccccccchHHHHHHhhhhccChhhh
Confidence 47888887776554111 111111111122224577788888877665544433
No 325
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.72 E-value=5.2e-08 Score=106.16 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=112.3
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh---
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 553 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~--- 553 (807)
++++.|.+...+.+.+.+... ......|||+|++||||+++|+++...+ +.+|+.|+|..+-.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 345666665555555544321 1234569999999999999999998775 36899999987521
Q ss_pred --cccCCch-------HHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--C-----
Q 003623 554 --MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--A----- 617 (807)
Q Consensus 554 --~~vg~se-------~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~--~----- 617 (807)
.++|... ......|..|. ...||||||+.|.. .+...|+..|+.-. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPM--------------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 1222110 00012234443 35899999999853 35566666665421 1
Q ss_pred --CCcEEEeecCCCC-------CCCCccccCCCCCc-ceeecCCCCH--HHHHHHHHHHhccC----CCC--Cccc---H
Q 003623 618 --KKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKS----PVS--KDVD---L 676 (807)
Q Consensus 618 --~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~--~~~~---~ 676 (807)
..++.||+||+.. ..+.+.|.. ||. ..|.+|+.-. ++...+++.++.+. ... ..++ +
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1257788888763 245566665 773 4666666532 34455566555322 111 1222 3
Q ss_pred HHHHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 677 RALAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 677 ~~la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
..|... .|.| ++|+++++.|+..+
T Consensus 215 ~~L~~y--~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNY--RWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhC--CCCcHHHHHHHHHHHHHHhc
Confidence 334433 3554 89999998887654
No 326
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=4.4e-08 Score=106.19 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCCe-------------------------EEEEeccchhh--------cc----
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 555 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~~-------------------------~i~v~~~~l~~--------~~---- 555 (807)
+.+.++||+||+|+||+++|+++|..+.+. +..+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 566789999999999999999999876331 12221110000 00
Q ss_pred --cC---------CchHHHHHHHHHHH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCc
Q 003623 556 --FG---------ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 620 (807)
Q Consensus 556 --vg---------~se~~i~~lf~~a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~ 620 (807)
-| -+-..+|.+.+.+. .....|++||++|.+.. ...|.||+.|+ ++..+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------------AAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------------HHHHHHHHHhc--CCCcC
Confidence 00 01235666655543 23456999999999743 35789999999 45678
Q ss_pred EEEeecCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHH
Q 003623 621 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 621 v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 664 (807)
+++|.+|++|+.|.|.+++ |+ ..++|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999998 99 49999999999988888654
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.71 E-value=8.2e-08 Score=104.58 Aligned_cols=167 Identities=22% Similarity=0.326 Sum_probs=100.3
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcc-----cCCch-------HHHHHHHHHHHhCCCeEEE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 579 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se-------~~i~~lf~~a~~~~p~ilf 579 (807)
...|||+|++||||+++|+++...+ +.+|+.|+|..+.... +|... ..-...|..|. ..+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEE
Confidence 4569999999999999999998776 3699999997653211 11100 00111244443 35999
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC---------CCCcEEEeecCCCC-------CCCCccccCCCCC
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRL 643 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---------~~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (807)
||||+.|.. .+...|+..|+.-. ...++-+|++||.. ..+.+.|.. ||
T Consensus 99 Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl 162 (329)
T TIGR02974 99 LDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL 162 (329)
T ss_pred eCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh
Confidence 999999743 35566677665421 12357888898863 234455555 66
Q ss_pred c-ceeecCCCC--HHHHHHHHHHHhccC----CCC-----CcccHHHHHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 644 D-QLIYIPLPD--EESRLQIFKACLRKS----PVS-----KDVDLRALAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 644 ~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~-----~~~~~~~la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
. ..|.+|+.. .++...+++.++.+. +.. .+.-+..|... .|.| ++|+++++.|+..+
T Consensus 163 ~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y--~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 163 AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY--HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC--CCCchHHHHHHHHHHHHHhC
Confidence 4 456666554 244555555555321 111 12223344433 3444 88999998888765
No 328
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1.4e-07 Score=109.80 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=115.9
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEE-eccc---h-
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV-KGPE---L- 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v-~~~~---l- 551 (807)
...++++.|.++..+.+..++.... ++..+.+.++|+||||||||++++++|++++..++.. +... .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4567888888887777776554211 1223344599999999999999999999988655431 1110 0
Q ss_pred ------------hhcccCCchHHHHHHHHHHHh----------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHH
Q 003623 552 ------------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 609 (807)
Q Consensus 552 ------------~~~~vg~se~~i~~lf~~a~~----------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL 609 (807)
+..+ ...-...+.+...+.. ....|||+|||+.+... ..+.+..+|
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lL 219 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEIL 219 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHH
Confidence 0111 1122334455555542 34579999999987532 122444555
Q ss_pred H-HHcCCCCCCcEEEeecCC-CCC--------------CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC--CC
Q 003623 610 T-EMDGMSAKKTVFIIGATN-RPD--------------IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP--VS 671 (807)
Q Consensus 610 ~-~ld~~~~~~~v~vi~aTn-~~~--------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~ 671 (807)
. .... ...+.+|++++ .|. .|.++++.--|.. +|.|++.+.....+.|+..+.... ..
T Consensus 220 r~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 4 2221 22333333333 121 2346776422443 799999999997777777775431 11
Q ss_pred ------CcccHHHHHHHcccCChhhHHHHHHHHHHHHHH
Q 003623 672 ------KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 672 ------~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~ 704 (807)
....+..|+. .+++||+.++......+.+
T Consensus 296 ~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 1234555555 4567999888776666543
No 329
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-07 Score=98.78 Aligned_cols=82 Identities=28% Similarity=0.528 Sum_probs=61.7
Q ss_pred eEEEEccchhhcCCcCCCchhHH-HHHHHHHHHHhhccc--------cCCeEEEEEec----CCCCCCCHHHHccCCcce
Q 003623 303 SIIFIDEIDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDR 369 (807)
Q Consensus 303 ~il~iDEid~l~~~~~~~~~~~~-~~v~~~Ll~~ld~~~--------~~~~v~vI~at----n~~~~ld~al~r~~Rf~~ 369 (807)
.|+||||||.++.+.+.+.+++. .-+...|+-+++|-. ...++++||+- ..|.++-|.|. |||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 69999999999987754332333 345567777776532 23578888753 46788889997 49999
Q ss_pred EEEeCCCChhHHHHHHH
Q 003623 370 EIDIGVPDEVGRLEVLR 386 (807)
Q Consensus 370 ~i~i~~P~~~~R~~Il~ 386 (807)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999988885
No 330
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.69 E-value=2.3e-07 Score=94.35 Aligned_cols=106 Identities=28% Similarity=0.275 Sum_probs=62.4
Q ss_pred CeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCC-------------CCCCCccccCCC
Q 003623 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-------------PDIIDPALLRPG 641 (807)
Q Consensus 575 p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~-------------~~~ld~allrpg 641 (807)
|.|+||||++.|- -+.+..|-..|+.- -.-+||+|||| |+-+++.++.
T Consensus 297 PGVLFIDEVhMLD--------------iEcFTyL~kalES~---iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------------IECFTYLHKALESP---IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhhh--------------hHHHHHHHHHhcCC---CCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 6788888877752 23344444444432 22367778886 4455666665
Q ss_pred CCcceeecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHcccCChhhHHHHHHHHHH
Q 003623 642 RLDQLIYIPLPDEESRLQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACK 700 (807)
Q Consensus 642 Rf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~sg~di~~l~~~A~~ 700 (807)
|+- +|..-+++.++.++|++...+...+.- +.-+..|++....-|-+...+++.-|..
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~ 416 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASI 416 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHH
Confidence 653 566667889999999998887666553 3335566665433333333333333333
No 331
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5.5e-07 Score=97.89 Aligned_cols=170 Identities=12% Similarity=0.176 Sum_probs=109.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEechh
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFCINGPE 277 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--------~i~v~~~~ 277 (807)
+|++|.|++..++.|...+... ..+..+||+||+|+|||++|+.+|+.+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5789999999999998887541 224568999999999999999999976332 22222110
Q ss_pred hhhhhhchhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 278 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 278 l~~~~~g~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
+. .-.-..++.+.+.. .....-|++||++|.+. ....+.|+..++... ..+++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 11 01123455555533 23344699999998773 223467888887643 34445545577
Q ss_pred CCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCC
Q 003623 354 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 354 ~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~ 410 (807)
++.+-+.+++ |. ..+.+..|+.++-...+...... .+...+..++..+.|-
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGI 183 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCC
Confidence 8899999988 55 57889999988887777654332 1223344555555553
No 332
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.69 E-value=3.6e-07 Score=95.77 Aligned_cols=177 Identities=16% Similarity=0.248 Sum_probs=106.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---------CCeEEEEeccchhh--------------ccc-CCc-hHHHHHHHHH
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------------MWF-GES-EANVREIFDK 569 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---------~~~~i~v~~~~l~~--------------~~v-g~s-e~~i~~lf~~ 569 (807)
..++||+|++|.|||++++.++... ..|++.|.++.--+ .|- ..+ .+.-..+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999764 24677776532110 110 111 1222233444
Q ss_pred HHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCc--EEEeecCCCCC--CCCccccCCCCCcc
Q 003623 570 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT--VFIIGATNRPD--IIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~--v~vi~aTn~~~--~ld~allrpgRf~~ 645 (807)
.+...+-+|+|||++.++.-+ .+-..++|+.|..+.+.-+ ++.+||-.-.. .-|+-+-+ ||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~- 206 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE- 206 (302)
T ss_pred HHHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-
Confidence 566677899999999976421 1123444454444433333 44444332222 33666666 998
Q ss_pred eeecCCC-CHHHHHHHHHHHhccCCCCCc--cc----HHHHHHHcccCChhhHHHHHHHHHHHHHHHH
Q 003623 646 LIYIPLP-DEESRLQIFKACLRKSPVSKD--VD----LRALAKYTQGFSGADITEICQRACKYAIREN 706 (807)
Q Consensus 646 ~i~~~~p-~~~~r~~Il~~~l~~~~~~~~--~~----~~~la~~~~g~sg~di~~l~~~A~~~a~~~~ 706 (807)
.+.+|.- ..++...++..+-+..|+... .. ...|-..++|.. +++..++..|+..|++.+
T Consensus 207 ~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 207 PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSG 273 (302)
T ss_pred CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcC
Confidence 4455532 234556677777666665422 22 245556778876 488999999999998875
No 333
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.3e-08 Score=100.38 Aligned_cols=97 Identities=35% Similarity=0.533 Sum_probs=72.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhhch-hHHHHHHHHHHHH----hcCCeEEEEccchhhcC
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~i~~if~~a~----~~~p~il~iDEid~l~~ 315 (807)
..+|||.||+|||||.||+.||+.++.+|-.-++..+.. .|+|+ .+..+..+++.+. .....|++|||||.++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 357999999999999999999999999998888877754 56665 4455666666543 23457999999999987
Q ss_pred CcCCCc---hhHHHHHHHHHHHHhhc
Q 003623 316 KREKTH---GEVERRIVSQLLTLMDG 338 (807)
Q Consensus 316 ~~~~~~---~~~~~~v~~~Ll~~ld~ 338 (807)
+....+ +-...-+...|+..++|
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 654332 11124566778888876
No 334
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=8.1e-07 Score=97.84 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=114.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE-----------
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF----------- 271 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i----------- 271 (807)
.+-.+++|.|+++.++.|.+.+... .-+..+||+||+|+||+++|.++|+.+-+.--
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3457889999999999998887652 22456999999999999999999988732100
Q ss_pred --EE--ec-----------hhhh--hh---hhc------hhHHHHHHHHHHH----HhcCCeEEEEccchhhcCCcCCCc
Q 003623 272 --CI--NG-----------PEIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 272 --~v--~~-----------~~l~--~~---~~g------~~~~~i~~if~~a----~~~~p~il~iDEid~l~~~~~~~~ 321 (807)
.+ .| +++. .. ..+ -.-..+|.+.+.. ....+.|++|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 00 0100 00 000 0123355554433 23467899999999773
Q ss_pred hhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHH
Q 003623 322 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLE 401 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~ 401 (807)
....+.|+..++... ...++|.+|+.++.+.+.+++ |+ ..+.++.|+.++-.++|...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 234466777777533 345666688888888888877 65 67899999999998888765321 1222234
Q ss_pred HHHHhhCCCch
Q 003623 402 RIAKDTHGYVG 412 (807)
Q Consensus 402 ~la~~t~g~~~ 412 (807)
.++..+.|-.+
T Consensus 223 ~l~~~s~Gsp~ 233 (365)
T PRK07471 223 ALAALAEGSVG 233 (365)
T ss_pred HHHHHcCCCHH
Confidence 56666666443
No 335
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3.5e-07 Score=106.48 Aligned_cols=190 Identities=13% Similarity=0.166 Sum_probs=108.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eechh-
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-INGPE- 277 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~-v~~~~- 277 (807)
+++.+..++++.|.++.++.++.++.-.. ++..+++.++|+|||||||||+++.+|++++..++. .+...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 46677889999999999999988876421 123455679999999999999999999998765422 11110
Q ss_pred ------------hhhhh--hchhHHHHHHHHHHHHh----------cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHH
Q 003623 278 ------------IMSKL--AGESESNLRKAFEEAEK----------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 333 (807)
Q Consensus 278 ------------l~~~~--~g~~~~~i~~if~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll 333 (807)
+...+ .......++.++..+.. ....||||||++.+.... ...+..++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lL 219 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEIL 219 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHH
Confidence 00000 01122334455554432 345799999998765321 11223333
Q ss_pred H-HhhccccCCeEEEEEecC-CCC--------------CCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCC-----
Q 003623 334 T-LMDGLKSRAHVIVIGATN-RPN--------------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----- 392 (807)
Q Consensus 334 ~-~ld~~~~~~~v~vI~atn-~~~--------------~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~----- 392 (807)
. ... ..+.+.+|++++ .+. -+.++++...|. ..|.|.+.+...-...|+..+...
T Consensus 220 r~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 3 111 122333333332 221 133667643344 478999999888655555443321
Q ss_pred ---CCCCchhHHHHHHhhCC
Q 003623 393 ---KLSDDVDLERIAKDTHG 409 (807)
Q Consensus 393 ---~l~~~~~l~~la~~t~g 409 (807)
.++....+..++....|
T Consensus 296 ~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cccccCCHHHHHHHHHhCCC
Confidence 12223456667675555
No 336
>PRK08116 hypothetical protein; Validated
Probab=98.66 E-value=4.7e-08 Score=103.29 Aligned_cols=123 Identities=24% Similarity=0.259 Sum_probs=75.8
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhccc----CCchHHHHHHHHHHHhCCCeEEEEcccchhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 587 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~v----g~se~~i~~lf~~a~~~~p~ilfiDEid~l~ 587 (807)
..|++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.+......+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 67888888888765432 212122233444433 23599999986421
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC-CC----CCccccCCCCC---cceeecCCCCH
Q 003623 588 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDE 654 (807)
Q Consensus 588 ~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~-~~----ld~allrpgRf---~~~i~~~~p~~ 654 (807)
........|...++..... +..+|.|||.+ +. ++..+.+ |+ ...|.++.+|.
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1123345555555543222 23467777764 32 4666665 64 33466666664
No 337
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=6.6e-08 Score=105.55 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=121.0
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh----CCeEEEEeccchhh
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 553 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~ 553 (807)
..+.+++|.+.--+.+.+.+.. -......+|++|++||||+.+|++|...+ +.|||.++|..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 3456777766555555554432 11234569999999999999999998554 56999999987643
Q ss_pred c-------------ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----
Q 003623 554 M-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---- 616 (807)
Q Consensus 554 ~-------------~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---- 616 (807)
. |.| ....-.-+|+.|... +||+|||..+.. .....||..||...
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~--------------~~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP--------------EGQEKLLRVLEEGEYRRV 205 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH--------------hHHHHHHHHHHcCceEec
Confidence 2 233 222233466666555 999999998754 34677788887632
Q ss_pred -----CCCcEEEeecCCC--CCCCCc--cccCCCCCcceeecCCCCH--HHHHHHHHHHh----ccCCCCCcccHHHHHH
Q 003623 617 -----AKKTVFIIGATNR--PDIIDP--ALLRPGRLDQLIYIPLPDE--ESRLQIFKACL----RKSPVSKDVDLRALAK 681 (807)
Q Consensus 617 -----~~~~v~vi~aTn~--~~~ld~--allrpgRf~~~i~~~~p~~--~~r~~Il~~~l----~~~~~~~~~~~~~la~ 681 (807)
-..+|.+|+|||- ++.+-. .+.+ -|+...|.+|+.-+ +++..+.+.++ ++.......+..+..+
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1246888888875 222222 3333 15666677766643 34444445554 3343333333322222
Q ss_pred Hc--ccCCh--hhHHHHHHHHHHHHHHHH
Q 003623 682 YT--QGFSG--ADITEICQRACKYAIREN 706 (807)
Q Consensus 682 ~~--~g~sg--~di~~l~~~A~~~a~~~~ 706 (807)
.. .-|.| ++++++++.++..+....
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhcccc
Confidence 22 22444 899999999988875443
No 338
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.65 E-value=1.5e-07 Score=104.85 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEec-----hhhhhhhhchhHHHHHHHHHHHHhc---CCeEEEEcc
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCING-----PEIMSKLAGESESNLRKAFEEAEKN---APSIIFIDE 309 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~-----~~l~~~~~g~~~~~i~~if~~a~~~---~p~il~iDE 309 (807)
-.+.+|||.||||||||++|++++...+. +|..+.+ .++++...-. ...-..-|.....+ ...++|+||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~-~~~~~g~f~r~~~G~L~~A~lLfLDE 115 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ-ALKDEGRYQRLTSGYLPEAEIVFLDE 115 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh-hhhhcCchhhhcCCccccccEEeecc
Confidence 45789999999999999999999997653 3333332 2332211000 00001112111111 234899999
Q ss_pred chhhcCCcCCCchhHHHHHHHHHHHHhhccc--------cCCeEEEEEecCCCCC---CCHHHHccCCcceEEEeCCCCh
Q 003623 310 IDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDE 378 (807)
Q Consensus 310 id~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--------~~~~v~vI~atn~~~~---ld~al~r~~Rf~~~i~i~~P~~ 378 (807)
|..+. ....+.|+..|..-. ..+..++++|||+... ..+++.. ||...+.+++|+.
T Consensus 116 I~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 116 IWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred cccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 97553 234566777773211 1122344555564322 2346665 8988899999974
Q ss_pred -hHHHHHHHHH
Q 003623 379 -VGRLEVLRIH 388 (807)
Q Consensus 379 -~~R~~Il~~~ 388 (807)
++-.++|...
T Consensus 183 ~~~e~~lL~~~ 193 (498)
T PRK13531 183 KANFRSMLTSQ 193 (498)
T ss_pred hHHHHHHHHcc
Confidence 5557777653
No 339
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.65 E-value=9.9e-08 Score=94.17 Aligned_cols=181 Identities=22% Similarity=0.279 Sum_probs=97.3
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh-C----CeEEEEeccch
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPEL 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~-~----~~~i~v~~~~l 551 (807)
...+.||+|.++..+.|.-.... | .-.+++|.|||||||||.+.++|+++ | -..+.++.++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34578899999888877654332 1 22469999999999999999999986 3 23566676654
Q ss_pred hhcccCCchHHHHHHHHHHHh-CCC---eEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecC
Q 003623 552 LTMWFGESEANVREIFDKARQ-SAP---CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 627 (807)
Q Consensus 552 ~~~~vg~se~~i~~lf~~a~~-~~p---~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aT 627 (807)
.+- ..-++--+.|..-+- .+| .|+++||+|++-. ..+.+.+|+ |+=..+ .--+..++
T Consensus 90 RGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gAQQAlRRt-------MEiyS~--ttRFalaC 150 (333)
T KOG0991|consen 90 RGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GAQQALRRT-------MEIYSN--TTRFALAC 150 (333)
T ss_pred ccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HHHHHHHHH-------HHHHcc--cchhhhhh
Confidence 321 111222234433222 222 6999999999743 112233333 332222 22355677
Q ss_pred CCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHcccCChhhHHHHHH
Q 003623 628 NRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQ 696 (807)
Q Consensus 628 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~sg~di~~l~~ 696 (807)
|.-+.|-+.+-+ |+- ++.|...+..+...-+....+...+. .+..++.+.-.++ .|.++.++
T Consensus 151 N~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~----GDMRQalN 213 (333)
T KOG0991|consen 151 NQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ----GDMRQALN 213 (333)
T ss_pred cchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc----chHHHHHH
Confidence 777666554444 555 33333333333322222222222222 2344555554443 35555444
No 340
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.64 E-value=9.5e-08 Score=109.69 Aligned_cols=191 Identities=23% Similarity=0.364 Sum_probs=111.3
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHH-----------hCCeEEEEe
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISVK 547 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~-----------~~~~~i~v~ 547 (807)
.|+++.|.....+.+.+.+... ......|||+|++||||+++|++|... .+.||+.|+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4778888887777666655421 123456999999999999999999887 357999999
Q ss_pred ccchhhc-----ccCCchH--------HHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC
Q 003623 548 GPELLTM-----WFGESEA--------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 614 (807)
Q Consensus 548 ~~~l~~~-----~vg~se~--------~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~ 614 (807)
|..+-.. .+|..+. .-.-+|+.|.. ..||||||+.|.. .+...||..|+.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL--------------PLQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH--------------HHHHHHHhhhhc
Confidence 9865321 1221110 11125555543 4899999999743 355666776654
Q ss_pred CC-----C----CCcEEEeecCCCCCCCCccccCCCCCcc-------eeecCCCCHHH----HHHHHHHHhcc----CCC
Q 003623 615 MS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEES----RLQIFKACLRK----SPV 670 (807)
Q Consensus 615 ~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~~-------~i~~~~p~~~~----r~~Il~~~l~~----~~~ 670 (807)
-. + .-++-||++||.. +... ...|+|.. .+.+..|...+ ...+++.++++ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~--L~~~-v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCD--LEED-VRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCC--HHHH-HhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 21 1 1246788888873 2111 12233432 23344444444 44556666654 222
Q ss_pred CCcccH--------HHHHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 671 SKDVDL--------RALAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 671 ~~~~~~--------~~la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
.-..+. ..|. ...|.| ++|++++++++..+
T Consensus 426 ~~~~~a~~~~~~a~~~L~--~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 426 PFSAALRQGLQQCETLLL--HYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CCCHHHHHhhHHHHHHHH--hCCCCchHHHHHHHHHHHHHhc
Confidence 111111 1222 223544 89999999988753
No 341
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=7.3e-08 Score=106.84 Aligned_cols=193 Identities=24% Similarity=0.375 Sum_probs=118.5
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccch--
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL-- 551 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l-- 551 (807)
..+|++|.|-......+.+.+.. .......|||.|.+||||..+|++|.+.+ +.|||.++|.-+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 45688888877665555544332 22445679999999999999999999987 569999999544
Q ss_pred -------hh----cccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----
Q 003623 552 -------LT----MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---- 616 (807)
Q Consensus 552 -------~~----~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~---- 616 (807)
++ .|.|.....-.-+|+.|... -||+|||..|. ..+...||..|..-.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp--------------l~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP--------------LPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC--------------HHHHHHHHHHHhhceEEec
Confidence 22 23333332233477777665 89999998763 345667777765421
Q ss_pred -C----CCcEEEeecCCCCCCCCccccCCCCCcc-------eeecCCCCHHHH----HHHHHHHhc----cCCCC----C
Q 003623 617 -A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESR----LQIFKACLR----KSPVS----K 672 (807)
Q Consensus 617 -~----~~~v~vi~aTn~~~~ld~allrpgRf~~-------~i~~~~p~~~~r----~~Il~~~l~----~~~~~----~ 672 (807)
+ .-+|-||||||+. +-.++- -|||-. ++.+..|...+| ..+...++. +.+.. .
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1 2368999999982 333332 255543 344455555554 223333333 22211 1
Q ss_pred cccHHHHHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 673 DVDLRALAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 673 ~~~~~~la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
+.-+..|.+. .|.| ++|++++..+...+
T Consensus 450 ~~a~~~L~~y--~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 450 PDALALLLRY--DWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HHHHHHHHhC--CCCchHHHHHHHHHHHHhcc
Confidence 2223334333 3555 89999999988644
No 342
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.63 E-value=1.6e-07 Score=109.62 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=115.5
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 554 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 554 (807)
..++++.|.+...+.+.+.+... ......|||+|++|||||++|++|...+ +.+|+.|+|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 46778888887766666654421 1234569999999999999999999886 469999999776321
Q ss_pred c-----cCCchH-------HHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C
Q 003623 555 W-----FGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A 617 (807)
Q Consensus 555 ~-----vg~se~-------~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~ 617 (807)
+ +|.... .-...|..| ...+||||||+.|.. .+...|+..|+.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCC
Confidence 1 111100 000112222 235999999999743 35566777775421 1
Q ss_pred ----CCcEEEeecCCCC-------CCCCccccCCCCCc-ceeecCCCC--HHHHHHHHHHHhccC----CCC---CcccH
Q 003623 618 ----KKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPD--EESRLQIFKACLRKS----PVS---KDVDL 676 (807)
Q Consensus 618 ----~~~v~vi~aTn~~-------~~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~---~~~~~ 676 (807)
..++-+|+||+.. ..+.+.|.. |+. ..|.+|+.. .++...|++.++++. ... .+.-+
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 1247788888763 122333333 443 356666654 344556666666432 111 12223
Q ss_pred HHHHHHcccCChhhHHHHHHHHHHHHHH
Q 003623 677 RALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 677 ~~la~~~~g~sg~di~~l~~~A~~~a~~ 704 (807)
..|....---+-++|+++++.|+..+-.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~~~ 430 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLSRS 430 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 3444433112348999999998876543
No 343
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.63 E-value=9.3e-08 Score=109.90 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=112.8
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 554 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 554 (807)
..|+++.|.....+.+.+.+... ......|||+|++||||+++|+++...+ +.||+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45778888887766666655321 1234569999999999999999999775 569999999765321
Q ss_pred -----ccCCch--------HHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----
Q 003623 555 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (807)
Q Consensus 555 -----~vg~se--------~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----- 616 (807)
.+|..+ ..-.-+|+.|.. ..||||||+.|.. .+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecC
Confidence 122111 011234555543 4899999999743 34566666665321
Q ss_pred C----CCcEEEeecCCCC--CCCCc-----cccCCCCCc-ceeecCCCCH--HHHHHHHHHHhccC----CCCCccc-HH
Q 003623 617 A----KKTVFIIGATNRP--DIIDP-----ALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKS----PVSKDVD-LR 677 (807)
Q Consensus 617 ~----~~~v~vi~aTn~~--~~ld~-----allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~~-~~ 677 (807)
+ .-++-+|++||.. +.+.. .|.. |+. ..|++||.-. ++...++..++++. .+.-..+ +.
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 418 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQ 418 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1 1245788888874 22222 2222 443 4555555532 34455566666543 1111111 11
Q ss_pred H-------HHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 678 A-------LAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 678 ~-------la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
. |.. ..|.| ++|++++++++..+
T Consensus 419 ~~~~~~~~L~~--y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 419 VLAGVADPLQR--YPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HhHHHHHHHHh--CCCCchHHHHHHHHHHHHHhc
Confidence 2 322 33555 89999999887754
No 344
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.61 E-value=1.1e-07 Score=92.84 Aligned_cols=134 Identities=26% Similarity=0.360 Sum_probs=87.5
Q ss_pred chhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCC-----------------------
Q 003623 485 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 541 (807)
Q Consensus 485 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~----------------------- 541 (807)
|++++.+.|...+.. -..+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 556666666665542 144566999999999999999999987521
Q ss_pred eEEEEeccchhhcccCCchHHHHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCC
Q 003623 542 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 617 (807)
Q Consensus 542 ~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~ 617 (807)
.++.++..+-.. .-.-..++.+.+.+.. ....|++|||+|.|. ....|.||..|+.-
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEP-- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCC--
Confidence 233333222100 0123566766666543 345799999999974 45689999999954
Q ss_pred CCcEEEeecCCCCCCCCccccCCCCCcceeecCCC
Q 003623 618 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 618 ~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (807)
..++++|.+|+.++.|-|.+++ |+. .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 4678888889999999999998 885 6666654
No 345
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.61 E-value=3.8e-07 Score=99.69 Aligned_cols=147 Identities=23% Similarity=0.316 Sum_probs=94.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 003623 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--------------------- 267 (807)
Q Consensus 209 di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--------------------- 267 (807)
++.|.+....++........ .-+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35556666666655554211 1122599999999999999999999986
Q ss_pred ---CcEEEEechhhhhhhhchhHHHHHHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc
Q 003623 268 ---AFFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (807)
Q Consensus 268 ---~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (807)
..++.++.++..... .....++.+.+.... ...-+++|||+|.+.. ...+.++..++...
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP 137 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC
Confidence 356677765543221 123344544443322 3357999999998854 23456777776543
Q ss_pred cCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHH
Q 003623 341 SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEV 384 (807)
Q Consensus 341 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~I 384 (807)
.+..+|.+||.++.+-+.+++ |. ..+.|.+|........
T Consensus 138 --~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred --CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 456777788999999888887 55 4567766555444433
No 346
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.61 E-value=3.1e-08 Score=96.96 Aligned_cols=114 Identities=29% Similarity=0.496 Sum_probs=72.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc-----ccCCc-------hHHHHHHHHHHHhCCCeEEE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGES-------EANVREIFDKARQSAPCVLF 579 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-----~vg~s-------e~~i~~lf~~a~~~~p~ilf 579 (807)
+..|||+|++||||+.+|++|.+.+ +.||+.|+|+.+... .+|.. ...-.-+|+.|... +||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 3569999999999999999999876 469999999765321 12221 11122467777665 999
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC-----CC----CCcEEEeecCCCCCCCCccccCCCCCcceee
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNRPDIIDPALLRPGRLDQLIY 648 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-----~~----~~~v~vi~aTn~~~~ld~allrpgRf~~~i~ 648 (807)
||||+.|.. .+...|+..|+.- .. .-++-||++|+. .+...+.. |+|..-+|
T Consensus 99 Ld~I~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~--~l~~~v~~-g~fr~dLy 159 (168)
T PF00158_consen 99 LDEIEDLPP--------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK--DLEELVEQ-GRFREDLY 159 (168)
T ss_dssp EETGGGS-H--------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS---HHHHHHT-TSS-HHHH
T ss_pred ecchhhhHH--------------HHHHHHHHHHhhchhccccccccccccceEEeecCc--CHHHHHHc-CCChHHHH
Confidence 999999854 3567777777632 11 126889999986 34444433 67764443
No 347
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.61 E-value=6.9e-08 Score=96.08 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 207 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
|+||.|++..+..|.-...- +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 68899999988887654432 45899999999999999999998775
No 348
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=3.2e-06 Score=88.78 Aligned_cols=60 Identities=37% Similarity=0.645 Sum_probs=44.7
Q ss_pred ccccChHHHHHHH---HHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhh
Q 003623 208 DDVGGVRKQMAQI---RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 278 (807)
Q Consensus 208 ~di~G~~~~~~~l---~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l 278 (807)
+.++|+.++-+.. .+++.. |-..+++||+.||||||||.||-.||+++| .+|+.++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~-----------gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQ-----------GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHh-----------CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4577877765543 344332 345689999999999999999999999997 46777776655
No 349
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=4e-07 Score=103.43 Aligned_cols=143 Identities=27% Similarity=0.370 Sum_probs=88.7
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--EEEEeccchhh---
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--- 553 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~--~i~v~~~~l~~--- 553 (807)
.+.++.|...+++.+.- .......++|+||||||||++++.+++.+... -..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 45566676665554322 12344579999999999999999999875311 01111111110
Q ss_pred -----------c------------ccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHH
Q 003623 554 -----------M------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 610 (807)
Q Consensus 554 -----------~------------~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~ 610 (807)
. .+|.....-.-.+..|... ++|+||++.+- ..+++.|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~--------------~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE--------------RRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC--------------HHHHHHHHH
Confidence 0 1111111111244555444 99999997752 456778888
Q ss_pred HHcCCC-----------CCCcEEEeecCCCCC---------------------CCCccccCCCCCcceeecCCCCHH
Q 003623 611 EMDGMS-----------AKKTVFIIGATNRPD---------------------IIDPALLRPGRLDQLIYIPLPDEE 655 (807)
Q Consensus 611 ~ld~~~-----------~~~~v~vi~aTn~~~---------------------~ld~allrpgRf~~~i~~~~p~~~ 655 (807)
.|+.-. ...++.+|+|+|... .|..+++. |||.++.+++|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 775421 124689999999742 47778888 99999999998754
No 350
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1.5e-07 Score=102.96 Aligned_cols=193 Identities=23% Similarity=0.345 Sum_probs=117.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 553 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~ 553 (807)
......|+|......++.+.|.. -......|||.|.+||||-.+|++|-..+ ..||+.++|+-+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45567788888877777766653 12344569999999999999999999887 46999999965532
Q ss_pred c-----ccCC----chHH---HHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC-----C
Q 003623 554 M-----WFGE----SEAN---VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----S 616 (807)
Q Consensus 554 ~-----~vg~----se~~---i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-----~ 616 (807)
. .+|. .-.. -+--|+.|... -||+|||..|. ..+...||..|..- -
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 1 1111 1111 11234555444 89999997763 23556666665532 2
Q ss_pred CCC----cEEEeecCCCCCCCCccccCCCCCcceee-------cCCCCHHHH----H----HHHHHHhccCCC-CCccc-
Q 003623 617 AKK----TVFIIGATNRPDIIDPALLRPGRLDQLIY-------IPLPDEESR----L----QIFKACLRKSPV-SKDVD- 675 (807)
Q Consensus 617 ~~~----~v~vi~aTn~~~~ld~allrpgRf~~~i~-------~~~p~~~~r----~----~Il~~~l~~~~~-~~~~~- 675 (807)
+.+ .|-||||||+ .|..++.. |+|-.-+| +..|...+| - ..++.+-++.+. .....
T Consensus 351 ~~r~ikVDVRiIAATNR--DL~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNR--DLEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccch--hHHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 222 5889999998 44444443 66653333 334544444 1 222333333333 11122
Q ss_pred --HHHHHHHcccCCh--hhHHHHHHHHHHHH
Q 003623 676 --LRALAKYTQGFSG--ADITEICQRACKYA 702 (807)
Q Consensus 676 --~~~la~~~~g~sg--~di~~l~~~A~~~a 702 (807)
++.|.+ ..|.| +++++++++|+..|
T Consensus 428 ~Al~~L~~--y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSS--YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHc--CCCCCcHHHHHHHHHHHHHHh
Confidence 333333 34655 89999999999988
No 351
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.60 E-value=2e-08 Score=91.68 Aligned_cols=104 Identities=31% Similarity=0.447 Sum_probs=56.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech-hhhh-hhhch----hHH-----HHHHHHHHHHhcCCeEEEEccchh
Q 003623 244 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EIMS-KLAGE----SES-----NLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~-~l~~-~~~g~----~~~-----~i~~if~~a~~~~p~il~iDEid~ 312 (807)
||||.|+||+|||++++++|+.++..|..|.+. ++.- ...|. ... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 699999999999999999999999999888763 3321 11111 000 001111 25999999987
Q ss_pred hcCCcCCCchhHHHHHHHHHHHHhhccc---------cCCeEEEEEecCCCC-----CCCHHHHccCCc
Q 003623 313 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN-----SIDPALRRFGRF 367 (807)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~vI~atn~~~-----~ld~al~r~~Rf 367 (807)
..+ ++.+.|++.|.... -...++||||.|+.+ .++.++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 643 34566777775322 123588999999875 55666665 55
No 352
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=4.1e-07 Score=98.05 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=92.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC------------------------eEEEEeccchhhcccCCchHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 568 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~lf~ 568 (807)
..+..+||+||+|+||+++|+++|..+-+ .++.+...+ ++.+ .-..+|++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34567999999999999999999987632 122222110 1111 2345665544
Q ss_pred HH----HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCc
Q 003623 569 KA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (807)
Q Consensus 569 ~a----~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (807)
.+ ..+...|++||++|.|.. ...|.||+.|+. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE--------------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce
Confidence 43 334457999999999743 357899999995 55677888899999999999988 987
Q ss_pred ceeecCCCCHHHHHHHHHHH
Q 003623 645 QLIYIPLPDEESRLQIFKAC 664 (807)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~ 664 (807)
.+.|++|+.++..+.+...
T Consensus 160 -~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHH
Confidence 8899999998887777654
No 353
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.59 E-value=1e-07 Score=113.76 Aligned_cols=247 Identities=17% Similarity=0.201 Sum_probs=128.0
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchh--
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL-- 552 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~-- 552 (807)
..|+++.|.+...+.+.+.+... ......|||+|++||||+++|+++...+ +.+|+.|+|..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 34677777766555554443321 1234459999999999999999999876 3699999987652
Q ss_pred ---hcccCCc----hHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC----CC---
Q 003623 553 ---TMWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----AK--- 618 (807)
Q Consensus 553 ---~~~vg~s----e~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----~~--- 618 (807)
+.++|.. .......|+.| ....||||||+.|.. .+...|+..|+.-. +.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 2222311 00001123333 235899999999743 34566666665321 11
Q ss_pred --CcEEEeecCCCCCCCCccccCCCCCcc-------eeecCCCCHHHH----HHHHHHHhccC------CCC-CcccHHH
Q 003623 619 --KTVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEESR----LQIFKACLRKS------PVS-KDVDLRA 678 (807)
Q Consensus 619 --~~v~vi~aTn~~~~ld~allrpgRf~~-------~i~~~~p~~~~r----~~Il~~~l~~~------~~~-~~~~~~~ 678 (807)
-++-||+|||..- ..+...|+|.. .+.+..|...+| ..+++.++++. ++. .+.-+..
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1577899988741 11222234421 333444444444 44555555432 111 2222334
Q ss_pred HHHHcccCChhhHHHHHHHHHHHHHHHHHHHHHHH-Hhhh-cCCccccccccc--cccccccHHHHHHHHhhcCCCCCHH
Q 003623 679 LAKYTQGFSGADITEICQRACKYAIRENIEKDIER-ERRR-SENPEAMEEDVE--DEVAEIKAVHFEESMKYARRSVSDA 754 (807)
Q Consensus 679 la~~~~g~sg~di~~l~~~A~~~a~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~~v~~~~f~~al~~~~~s~s~~ 754 (807)
|....-.-+-++|+++++.|...+-...+...... .... ............ .....++++-+..||+....+++..
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~gn~~~a 610 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGGRIQEM 610 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhCCCCeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHHHhCCCHHHH
Confidence 44333112348999999988765432222211100 0000 000000000000 1123466677888888888877665
Q ss_pred H
Q 003623 755 D 755 (807)
Q Consensus 755 ~ 755 (807)
.
T Consensus 611 A 611 (638)
T PRK11388 611 A 611 (638)
T ss_pred H
Confidence 3
No 354
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3.7e-07 Score=99.40 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=99.5
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC------------------------eEEEEeccchhhcccCCchHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 568 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~------------------------~~i~v~~~~l~~~~vg~se~~i~~lf~ 568 (807)
+.+..+||+||+|+||+++|.++|..+-+ .+..+....- ... -+-..+|.+-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHH
Confidence 44567999999999999999999987622 1222221100 000 11234555444
Q ss_pred H----HHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCc
Q 003623 569 K----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (807)
Q Consensus 569 ~----a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (807)
. +..+...|++||++|.|.. ...|.||+.|+. +..+.++|.+|+.++.|-|.+++ |+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD--------------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 4 4445567999999999843 357999999995 56678888899999999999998 998
Q ss_pred ceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHccc
Q 003623 645 QLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQG 685 (807)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 685 (807)
.+.|++|+.++..+.+.... ++. ..+...++..+.|
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G 196 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAG 196 (334)
T ss_pred -cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC
Confidence 68999999888777775421 222 2234455555555
No 355
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.57 E-value=2.8e-07 Score=109.19 Aligned_cols=156 Identities=24% Similarity=0.362 Sum_probs=96.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 267 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~------------------ 267 (807)
.|.+|.|++..+..+.-....| ...+|||.|++|||||++|++|+..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5778999998876665443321 124799999999999999999999883
Q ss_pred -----------------CcEEEEechhhhhhhhchh--HHHHH---HHHHH--HHhcCCeEEEEccchhhcCCcCCCchh
Q 003623 268 -----------------AFFFCINGPEIMSKLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKREKTHGE 323 (807)
Q Consensus 268 -----------------~~~i~v~~~~l~~~~~g~~--~~~i~---~if~~--a~~~~p~il~iDEid~l~~~~~~~~~~ 323 (807)
.+|+.+.+........|.. ...+. ..++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 3444444332222222211 11110 00000 0011235999999998743
Q ss_pred HHHHHHHHHHHHhhcc-----------ccCCeEEEEEecCCCC-CCCHHHHccCCcceEEEeCCCC-hhHHHHHHHH
Q 003623 324 VERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 387 (807)
Q Consensus 324 ~~~~v~~~Ll~~ld~~-----------~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~i~~P~-~~~R~~Il~~ 387 (807)
.+...|+..|+.- ....++.+|+++|+.+ .+.++|.. ||...+.++.|. .+++.++++.
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 3456677766521 1124688999988643 57888887 898888888765 4667777764
No 356
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.57 E-value=5.5e-07 Score=108.31 Aligned_cols=240 Identities=22% Similarity=0.292 Sum_probs=131.3
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh-
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 553 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~- 553 (807)
..|+++.|.....+.+.+.+... ......|||+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35677888887777666555421 1234569999999999999999999875 56999999876532
Q ss_pred ----cccCC--------chHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----
Q 003623 554 ----MWFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 616 (807)
Q Consensus 554 ----~~vg~--------se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~----- 616 (807)
..+|. ...... .|+.|. ..+||||||+.+.. .+...|+..|+...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a~---~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELAD---KSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhcC---CCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCC
Confidence 12221 111222 344443 35999999999743 35566666665421
Q ss_pred ----CCCcEEEeecCCCCC--CCC-----ccccCCCCCcceeecCCCCHHHH----HHHHHHHhccC----C--C--CCc
Q 003623 617 ----AKKTVFIIGATNRPD--IID-----PALLRPGRLDQLIYIPLPDEESR----LQIFKACLRKS----P--V--SKD 673 (807)
Q Consensus 617 ----~~~~v~vi~aTn~~~--~ld-----~allrpgRf~~~i~~~~p~~~~r----~~Il~~~l~~~----~--~--~~~ 673 (807)
...++-+|++|+..- .+. +.+.. |+. .+.+..|...+| ..+++.++.+. + + -..
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 113577888888741 222 22222 332 333445554444 33455554321 1 1 122
Q ss_pred ccHHHHHHHcccCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCC
Q 003623 674 VDLRALAKYTQGFSG--ADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV 751 (807)
Q Consensus 674 ~~~~~la~~~~g~sg--~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~ 751 (807)
.-+..|... .|.| ++|+++++.|+..+-...+........ ..................+.++.+..||+.....+
T Consensus 581 ~al~~L~~y--~WPGNvrEL~~~i~~a~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~Er~~I~~aL~~~~gn~ 657 (686)
T PRK15429 581 ETLRTLSNM--EWPGNVRELENVIERAVLLTRGNVLQLSLPDIT-LPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVV 657 (686)
T ss_pred HHHHHHHhC--CCCCcHHHHHHHHHHHHHhCCCCcccccCchhh-cccccccccccccccHHHHHHHHHHHHHHHcCCCc
Confidence 234444443 3544 899999999987654333322100000 00000000000001112456677888888888877
Q ss_pred C
Q 003623 752 S 752 (807)
Q Consensus 752 s 752 (807)
+
T Consensus 658 ~ 658 (686)
T PRK15429 658 A 658 (686)
T ss_pred c
Confidence 5
No 357
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.56 E-value=1.1e-06 Score=97.12 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.5
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (807)
+.+.+++.+.|+||+||||||++++|++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 34577899999999999999999999765
No 358
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5.7e-07 Score=96.81 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=100.6
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC---------------------eEEEEe-ccchhhc-c-cCCchHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA---------------------NFISVK-GPELLTM-W-FGESEANVREIFD 568 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~---------------------~~i~v~-~~~l~~~-~-vg~se~~i~~lf~ 568 (807)
..+..+||+||+|+||+++|.++|..+-+ .+..+. .++-.+. . ..-.-..||++-+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34557999999999999999999987522 122221 0110000 0 0011345666666
Q ss_pred HHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCc
Q 003623 569 KARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 644 (807)
Q Consensus 569 ~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~ 644 (807)
.+.. ..-.|++||++|.|.. ...|.||+.|+. +..++++|.+|+.++.|-|.+.+ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR--------------AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH--------------HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 5443 2347999999999843 357899999985 44567778888889999999998 997
Q ss_pred ceeecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHcccCChhh
Q 003623 645 QLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGAD 690 (807)
Q Consensus 645 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~sg~d 690 (807)
.+.|++|+.++..+.+... ++. ..+...++..+.|--+..
T Consensus 166 -~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 166 -RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLA 205 (319)
T ss_pred -EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHH
Confidence 8889999998877777642 222 223445666666544433
No 359
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.4e-06 Score=94.72 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=97.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a 297 (807)
+..+||+||+|+|||++|+.+|+.+.+. ++.+.... .++ .-.-..+|.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCC--CCCHHHHHHHHHHH
Confidence 4579999999999999999999987542 12221100 000 01234555555544
Q ss_pred H----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEe
Q 003623 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i 373 (807)
. ....-|++||++|.+.. ...+.|+..++... .++++|.+|+.++.+.|.+++ |+ ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 23456889999998742 34577888888643 467777889999999999998 76 44899
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCc
Q 003623 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 411 (807)
Q Consensus 374 ~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~ 411 (807)
++|+.++-.+.|..... ...+.....++...+|-.
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSP 197 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCH
Confidence 99999888877765431 122333445556666543
No 360
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.55 E-value=3.7e-06 Score=89.38 Aligned_cols=173 Identities=17% Similarity=0.281 Sum_probs=97.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC-cEEE---Eec----hhhh----hhh----hch-hHH---HHHHHH-HHHHhcC
Q 003623 243 KGILLYGPPGSGKTLIARAVANETGA-FFFC---ING----PEIM----SKL----AGE-SES---NLRKAF-EEAEKNA 301 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~-~~i~---v~~----~~l~----~~~----~g~-~~~---~i~~if-~~a~~~~ 301 (807)
..++|+||+|+||||+++.+++.+.. .+.. +++ .++. ..+ .+. ... .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998763 2211 111 1111 111 011 011 122212 2233566
Q ss_pred CeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-cCCeEEEEEecCC--CCCC----CHHHHccCCcceEEEeC
Q 003623 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNR--PNSI----DPALRRFGRFDREIDIG 374 (807)
Q Consensus 302 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-~~~~v~vI~atn~--~~~l----d~al~r~~Rf~~~i~i~ 374 (807)
+.+++|||++.+.+. ....+..+.+... ....+.|+.+..+ .+.+ ...+.+ |+...++++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 789999999876321 1122222222111 1222322322221 1111 122333 777788999
Q ss_pred CCChhHHHHHHHHHhcCCC-----CCCchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHh
Q 003623 375 VPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 429 (807)
Q Consensus 375 ~P~~~~R~~Il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 429 (807)
..+.++..+++...+.... ...+..+..+...+.|+... +..+|..+...+...
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc
Confidence 9999998888887665332 12345688899999998644 888888877665543
No 361
>PRK04132 replication factor C small subunit; Provisional
Probab=98.55 E-value=1.1e-06 Score=104.85 Aligned_cols=153 Identities=21% Similarity=0.213 Sum_probs=110.6
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcC------CeEEEE
Q 003623 241 PPKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA------PSIIFI 307 (807)
Q Consensus 241 ~~~~vLL~G--ppGtGKTtLar~la~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~------p~il~i 307 (807)
|+-+-+..| |++.||||+|++||+++ +..++.+|+++..+ -..++.+...+.... ..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567779 99999999999999997 45789999987422 134555555543322 259999
Q ss_pred ccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHH
Q 003623 308 DEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 308 DEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~ 387 (807)
||+|.+.. ...+.|+..|+... .++.+|.+||++..+.+++++ |+ ..+.|..|+.++-...|+.
T Consensus 637 DEaD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99998842 23466888887643 467788889999999999998 65 6789999998888877776
Q ss_pred HhcCCCCC-CchhHHHHHHhhCCCchhhH
Q 003623 388 HTKNMKLS-DDVDLERIAKDTHGYVGADL 415 (807)
Q Consensus 388 ~~~~~~l~-~~~~l~~la~~t~g~~~~dl 415 (807)
.+.+..+. ++..+..++..+.|-....+
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 65543332 34568888888887554444
No 362
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.54 E-value=2.8e-06 Score=89.16 Aligned_cols=181 Identities=18% Similarity=0.253 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEechh------hhh----h----h--hchhHHHHHHHHH
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPE------IMS----K----L--AGESESNLRKAFE 295 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~---------~~~i~v~~~~------l~~----~----~--~g~~~~~i~~if~ 295 (807)
...++||+|++|.|||++++.++...+ .+++.+..+. +.. . + .......-..+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 346799999999999999999987653 2455555421 111 0 0 0112223334455
Q ss_pred HHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCC--CCHHHHccCCcceEEEe
Q 003623 296 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFDREIDI 373 (807)
Q Consensus 296 ~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~--ld~al~r~~Rf~~~i~i 373 (807)
..+...+-+|+|||++.++.... ...+.+++.|..+... -+-.++.+|+..-... -|+.+.+ ||.. +.+
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~L 210 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNE--LQIPIVGVGTREAYRALRTDPQLAS--RFEP-FEL 210 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhc--cCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccC
Confidence 55667788999999999764321 1122333333322222 1234555554433332 3677776 8844 444
Q ss_pred CCCCh-hHHHHHHHHHhcCCCCC------CchhHHHHHHhhCCCchhhHHHHHHHHHHHHHHhhc
Q 003623 374 GVPDE-VGRLEVLRIHTKNMKLS------DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 431 (807)
Q Consensus 374 ~~P~~-~~R~~Il~~~~~~~~l~------~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 431 (807)
+.... ++-..++..+...+++. +......+...+.|..| ++..++..|+..+++...
T Consensus 211 p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 211 PRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 44332 23344566665555543 22234677778888775 577888888888887643
No 363
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.53 E-value=8.3e-07 Score=102.88 Aligned_cols=193 Identities=23% Similarity=0.317 Sum_probs=112.2
Q ss_pred cccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc--
Q 003623 480 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 554 (807)
Q Consensus 480 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-- 554 (807)
..+++|.....+.+.+.+... ......|||+|++||||+++|+++...+ +.+|+.|+|..+-..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 456677776666666554421 1234569999999999999999999885 469999999876321
Q ss_pred ---ccCCch-------HHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------
Q 003623 555 ---WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 616 (807)
Q Consensus 555 ---~vg~se-------~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-------- 616 (807)
.+|... ......|+.|. ...||||||+.|.. .+...|+..|+.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCc
Confidence 122110 00011344443 34899999999853 35566666665421
Q ss_pred -CCCcEEEeecCCCCC-------CCCccccCCCCCc-ceeecCCCCH--HHHHHHHHHHhccC----C---CC-CcccHH
Q 003623 617 -AKKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLRKS----P---VS-KDVDLR 677 (807)
Q Consensus 617 -~~~~v~vi~aTn~~~-------~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~---~~-~~~~~~ 677 (807)
...++-||++||+.- .+.+.|.. |+. ..|++|+... ++...+++.++++. . +. .+.-+.
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112578899998741 23333433 443 2355554432 33344555554332 1 11 122233
Q ss_pred HHHHHcccCCh--hhHHHHHHHHHHHHHH
Q 003623 678 ALAKYTQGFSG--ADITEICQRACKYAIR 704 (807)
Q Consensus 678 ~la~~~~g~sg--~di~~l~~~A~~~a~~ 704 (807)
.|... .|.| ++|+++++.|+..+..
T Consensus 396 ~L~~y--~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 396 ALLAY--DWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhC--CCCCcHHHHHHHHHHHHHhcCC
Confidence 44433 3544 8999999999887754
No 364
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.53 E-value=2.8e-07 Score=102.52 Aligned_cols=245 Identities=22% Similarity=0.308 Sum_probs=140.9
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC---CeEEEEeccchhhc-
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM- 554 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~---~~~i~v~~~~l~~~- 554 (807)
.+.++.|.....+++.+.+... ......||++|++||||-.+|++|...+. .||+.|+|..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3556777777777776665421 12345699999999999999999998874 59999999655321
Q ss_pred ----ccC--------CchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCC-----CC
Q 003623 555 ----WFG--------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA 617 (807)
Q Consensus 555 ----~vg--------~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~-----~~ 617 (807)
.+| ...+.. -.|+.|... .||+|||..+. ..+...||..|..- .+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~-G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRI-GRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHhhcccccCcCCcccccC-cceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCC
Confidence 122 112222 256666554 99999998864 34566677766542 11
Q ss_pred ----CCcEEEeecCCCCCCCCccccCCCCCc-------ceeecCCCCHHHH----HHHHHHHhcc----CCC-CCcccHH
Q 003623 618 ----KKTVFIIGATNRPDIIDPALLRPGRLD-------QLIYIPLPDEESR----LQIFKACLRK----SPV-SKDVDLR 677 (807)
Q Consensus 618 ----~~~v~vi~aTn~~~~ld~allrpgRf~-------~~i~~~~p~~~~r----~~Il~~~l~~----~~~-~~~~~~~ 677 (807)
.-+|-||+|||+. |....-. |||- .++.+..|...+| --++++++++ .+. .....-+
T Consensus 270 ~~~i~vdvRiIaaT~~d--L~~~v~~-G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 270 NKPIKVDVRIIAATNRD--LEEEVAA-GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPE 346 (464)
T ss_pred CcccceeeEEEeecCcC--HHHHHHc-CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 1268899999983 2222222 4443 2445556655555 3445555543 221 1233334
Q ss_pred HHHHH-cccCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhcCCcccccc------ccccccccccHHHHHHHH
Q 003623 678 ALAKY-TQGFSG--ADITEICQRACKYAIRENIEKDIERER----RRSENPEAMEE------DVEDEVAEIKAVHFEESM 744 (807)
Q Consensus 678 ~la~~-~~g~sg--~di~~l~~~A~~~a~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~v~~~~f~~al 744 (807)
.++.. +..|.| ++|+|+++.++..+-...+........ ........... ...+....+..+-+..||
T Consensus 347 a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~~aL 426 (464)
T COG2204 347 ALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLILQAL 426 (464)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 44433 234655 899999999988886654433211000 00000000000 001223456667777888
Q ss_pred hhcCCCCCHHH
Q 003623 745 KYARRSVSDAD 755 (807)
Q Consensus 745 ~~~~~s~s~~~ 755 (807)
......+++..
T Consensus 427 ~~~~g~~~~aA 437 (464)
T COG2204 427 ERTGGNKSEAA 437 (464)
T ss_pred HHhCCCHHHHH
Confidence 88888777754
No 365
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.4e-07 Score=99.19 Aligned_cols=97 Identities=35% Similarity=0.559 Sum_probs=72.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhh-hhhch-hHHHHHHHHHHHH----hcCCeEEEEccchhhcC
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~-~~~g~-~~~~i~~if~~a~----~~~p~il~iDEid~l~~ 315 (807)
..+|||.||+|+|||.||+.||+.++.+|...+|..+.. .|+|+ .+..|..+++.|. ..+..|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 357999999999999999999999999999999988864 46664 5667777777663 34557999999999984
Q ss_pred CcCCC--chh-HHHHHHHHHHHHhhc
Q 003623 316 KREKT--HGE-VERRIVSQLLTLMDG 338 (807)
Q Consensus 316 ~~~~~--~~~-~~~~v~~~Ll~~ld~ 338 (807)
....- ..+ -..-+...|+.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 33211 111 123456778888875
No 366
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.7e-06 Score=93.50 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=116.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (807)
.|++|.|++..++.+++.+... .-+..+||+||+|+||+++|.++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4788999999999999888652 224589999999999999999999886321
Q ss_pred --EEEEechhhh-hh--------hhc--------hhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHH
Q 003623 270 --FFCINGPEIM-SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 326 (807)
Q Consensus 270 --~i~v~~~~l~-~~--------~~g--------~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 326 (807)
++.+...... ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222110000 00 000 01124555544433 23457999999987732
Q ss_pred HHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHh
Q 003623 327 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 406 (807)
Q Consensus 327 ~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~ 406 (807)
...+.|+..++... . .++|..|+.++.+-|.+++ |. ..+.++.|+.++-.++|......- ..+.++..++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHH
Confidence 24467888888754 3 3455677788999999998 65 678999999999988887653211 111224566777
Q ss_pred hCCCchhhH
Q 003623 407 THGYVGADL 415 (807)
Q Consensus 407 t~g~~~~dl 415 (807)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 776554433
No 367
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.52 E-value=4.7e-06 Score=96.88 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=49.9
Q ss_pred cCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhh--------------cc--------cC------Cc
Q 003623 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------FG------ES 559 (807)
Q Consensus 511 ~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~--------------~~--------vg------~s 559 (807)
|+..+..++++|+||+|||+++..++.+. +.+.+.+...+-.. .+ .. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 66777779999999999999999887653 45555554322110 00 00 01
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003623 560 EANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 560 e~~i~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444455566788999999988864
No 368
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=9.7e-07 Score=94.93 Aligned_cols=129 Identities=13% Similarity=0.194 Sum_probs=92.6
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC-----------------------eEEEEeccchhhcccCCchHHHHHHHHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 569 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~-----------------------~~i~v~~~~l~~~~vg~se~~i~~lf~~ 569 (807)
+.+..+||+||.|+||+++|.++|..+-+ .|+.+.... .++.+ +-..+|.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 45567999999999999999999987521 233332210 00111 12355655544
Q ss_pred HH----hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcc
Q 003623 570 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 645 (807)
Q Consensus 570 a~----~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~ 645 (807)
+. .+...|++||++|.+.. ...|.||+.|+. +..++++|..|+.++.|-|.+++ |+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~--------------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE--------------SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 43 33457999999999843 357899999995 45678888889999999999988 997
Q ss_pred eeecCCCCHHHHHHHHHH
Q 003623 646 LIYIPLPDEESRLQIFKA 663 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~ 663 (807)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888877754
No 369
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.47 E-value=6.6e-07 Score=103.73 Aligned_cols=197 Identities=18% Similarity=0.271 Sum_probs=109.3
Q ss_pred cccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc
Q 003623 478 VNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 554 (807)
Q Consensus 478 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~ 554 (807)
..|+++.|.....+.+.+.+.. +. .....+||+|++||||+++|+++...+ ..+|+.++|+.+-..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~----------~A-~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARK----------LA-MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHH----------Hh-CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 4577777777655544443321 11 123459999999999999999987665 368999999875321
Q ss_pred -----ccCCch-------HHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C
Q 003623 555 -----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A 617 (807)
Q Consensus 555 -----~vg~se-------~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~ 617 (807)
.+|... ..-..+|+.|.. ..||||||+.|.. .+...|+..++.-. .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSP--------------RMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCH--------------HHHHHHHHHHhcCCcccCCC
Confidence 112110 001124554433 4899999999854 24566666665421 1
Q ss_pred ----CCcEEEeecCCCC--C-----CCCccccCCCCCc-ceeecCCCCH--HHHHHHHHHHhc----cCCCC-CcccHHH
Q 003623 618 ----KKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPLPDE--ESRLQIFKACLR----KSPVS-KDVDLRA 678 (807)
Q Consensus 618 ----~~~v~vi~aTn~~--~-----~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~-~~~~~~~ 678 (807)
..++-||+||+.+ + .+.+.|.. |+. ..|.+|+... +....+++.+++ +.+.. ....-+.
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 1256788888764 1 23344444 554 3455554432 233344444443 22211 1222222
Q ss_pred HHHH-cccCCh--hhHHHHHHHHHHHHHH
Q 003623 679 LAKY-TQGFSG--ADITEICQRACKYAIR 704 (807)
Q Consensus 679 la~~-~~g~sg--~di~~l~~~A~~~a~~ 704 (807)
+... ...|.| ++|++++..|+..+-.
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~~~ 439 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQLEG 439 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Confidence 2222 223544 8888888888776533
No 370
>PRK08116 hypothetical protein; Validated
Probab=98.47 E-value=8e-07 Score=93.96 Aligned_cols=101 Identities=20% Similarity=0.373 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchh----HHHHHHHHHHHHhcCCeEEEEccchhhc
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~----~~~i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
+.+++|+|++|||||+||.++++.+ +.+++.++.+++........ ......+++.. ....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 67788888888765443211 11122333332 234699999985421
Q ss_pred CCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 003623 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (807)
. . ......|..+++........ +|.|||.+
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~~-~IiTsN~~ 221 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGLP-TIVTTNLS 221 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCCC-EEEECCCC
Confidence 1 1 12335566666654333333 44466643
No 371
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=2e-06 Score=93.88 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=98.4
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 003623 207 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 269 (807)
Q Consensus 207 ~~di~G-~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------- 269 (807)
|+.|.| ++..++.|+..+... ..+..+||+||+|+||+++|+.+|+.+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 556666 888888888877531 234568999999999999999999886421
Q ss_pred --------EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhh
Q 003623 270 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 337 (807)
Q Consensus 270 --------~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld 337 (807)
+..+... +. .-.-..++.+.+... ....-|++|||+|.+. ....+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc
Confidence 1111110 00 011234555554433 2234699999998773 224467888888
Q ss_pred ccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHH
Q 003623 338 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 338 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~ 387 (807)
... ..+++|.+|+.+..+-|.+++ |. ..+++..|+.++-..+|+.
T Consensus 136 EPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 643 355666677788899999998 55 5688999998887777653
No 372
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.45 E-value=5.7e-06 Score=89.73 Aligned_cols=161 Identities=24% Similarity=0.371 Sum_probs=105.2
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEec--------
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 548 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~-------- 548 (807)
++.|.-+.|++..|..|.-.... +.-.|+|+.|+.|+||||++++||..+.---+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 34567788888888766433221 234579999999999999999999987321111111
Q ss_pred c------------------------chhhcccCCchH----------HHH---HHHH---HHHhCCCeEEEEcccchhhh
Q 003623 549 P------------------------ELLTMWFGESEA----------NVR---EIFD---KARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 549 ~------------------------~l~~~~vg~se~----------~i~---~lf~---~a~~~~p~ilfiDEid~l~~ 588 (807)
+ .+...-.|.++. .++ ..|+ .|+. .-.|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL~- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLLD- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEecccccc-
Confidence 0 011111233333 111 1111 1222 22599999998863
Q ss_pred hcCCCCCCCCccHHHHHHHHHHHHcCC-----------CCCCcEEEeecCCCCC-CCCccccCCCCCcceeecCCC-CHH
Q 003623 589 QRGSSVGDAGGAADRVLNQLLTEMDGM-----------SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEE 655 (807)
Q Consensus 589 ~r~~~~~~~~~~~~~v~~~lL~~ld~~-----------~~~~~v~vi~aTn~~~-~ld~allrpgRf~~~i~~~~p-~~~ 655 (807)
+.+++.||+.+..- ...-++++|||.|.-+ .|-|-|+- ||...|.+..| +.+
T Consensus 158 -------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 158 -------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred -------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 45788888877542 1234789999999753 77788887 99999999876 789
Q ss_pred HHHHHHHHHhcc
Q 003623 656 SRLQIFKACLRK 667 (807)
Q Consensus 656 ~r~~Il~~~l~~ 667 (807)
+|.+|.+..+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 373
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.43 E-value=4.6e-06 Score=85.41 Aligned_cols=98 Identities=23% Similarity=0.218 Sum_probs=67.1
Q ss_pred EEeecCCC------------CCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcccCCh
Q 003623 622 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSG 688 (807)
Q Consensus 622 ~vi~aTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~sg 688 (807)
+++.+||+ |+-|+-.|+. |+ .+|...+++.++.++||+..+....+.-+.| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 56667775 4556666665 55 3777889999999999999987765543333 4455555444455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccccccHHHHHHHHhhc
Q 003623 689 ADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYA 747 (807)
Q Consensus 689 ~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~ 747 (807)
+.--+++..|.+.|.++. ...+..+|++.+++-+
T Consensus 396 RYai~Lit~a~~~~~krk-------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK-------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------------CceeehhHHHHHHHHH
Confidence 666677778888777765 2367888888887644
No 374
>PRK08181 transposase; Validated
Probab=98.43 E-value=1.5e-06 Score=91.46 Aligned_cols=101 Identities=23% Similarity=0.417 Sum_probs=63.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchh-HHHHHHHHHHHHhcCCeEEEEccchhhcCC
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~i~~if~~a~~~~p~il~iDEid~l~~~ 316 (807)
.+.+++|+||||||||+|+.+++.++ +..+++++..+++..+.... .......++.. ..+.+|+|||+......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 46789999999999999999998764 66778888888776543211 11223334333 34679999999876432
Q ss_pred cCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 003623 317 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (807)
. .....|..+++....+.. +|.|||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~s--~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERRS--ILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCCC--EEEEcCCC
Confidence 1 112345555554333322 34467754
No 375
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.43 E-value=2.5e-06 Score=83.59 Aligned_cols=130 Identities=27% Similarity=0.498 Sum_probs=76.1
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh-----
Q 003623 210 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----- 281 (807)
Q Consensus 210 i~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----- 281 (807)
|.|.+..++++++.+.... ..+.+|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 4566777777776665422 234689999999999999999997764 468999999765322
Q ss_pred hhchhH-------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc---------cCCeE
Q 003623 282 LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHV 345 (807)
Q Consensus 282 ~~g~~~-------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v 345 (807)
..|... ..-..+|+.|.. ..||||||+.+.+. +...|+..++.-. ...++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccc
Confidence 111100 001134555544 49999999988532 3455666665211 12368
Q ss_pred EEEEecCCCCCCCHHHHccCCc
Q 003623 346 IVIGATNRPNSIDPALRRFGRF 367 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r~~Rf 367 (807)
.+|++|+.+ +...+ ..|+|
T Consensus 136 RiI~st~~~--l~~~v-~~g~f 154 (168)
T PF00158_consen 136 RIIASTSKD--LEELV-EQGRF 154 (168)
T ss_dssp EEEEEESS---HHHHH-HTTSS
T ss_pred eEEeecCcC--HHHHH-HcCCC
Confidence 889888864 33333 33555
No 376
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.42 E-value=1.7e-06 Score=101.13 Aligned_cols=53 Identities=30% Similarity=0.523 Sum_probs=43.7
Q ss_pred eccCCcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC
Q 003623 473 VEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (807)
Q Consensus 473 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~ 540 (807)
++.|...|+++.|++++++.|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456678899999999998888765542 24699999999999999999998764
No 377
>PRK08181 transposase; Validated
Probab=98.42 E-value=5e-07 Score=95.06 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=64.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccC-CchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
...+++|+||||||||+|+.++++++ +..++.++.++++..+.. ..+.....+++... .+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC
Confidence 34679999999999999999999765 667778888888764421 11223344555443 3469999999875431
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (807)
......+-++++..-+ . + -+|.|||.+
T Consensus 183 ---------~~~~~~Lf~lin~R~~---~-~-s~IiTSN~~ 209 (269)
T PRK08181 183 ---------QAETSVLFELISARYE---R-R-SILITANQP 209 (269)
T ss_pred ---------HHHHHHHHHHHHHHHh---C-C-CEEEEcCCC
Confidence 1223344444444322 2 1 367788875
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.42 E-value=6.2e-07 Score=106.71 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|+||+|||||||++.|++..
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999875
No 379
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.41 E-value=1.1e-05 Score=94.77 Aligned_cols=53 Identities=28% Similarity=0.418 Sum_probs=44.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 003623 202 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 269 (807)
Q Consensus 202 ~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~ 269 (807)
+++.-++++.|.++.++.+...+.. +.+++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3556788899999998888777653 3489999999999999999999998754
No 380
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.41 E-value=1.7e-06 Score=102.87 Aligned_cols=162 Identities=21% Similarity=0.169 Sum_probs=89.3
Q ss_pred ccchhhhhhhhhhcccccCCChhhh--------hhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhC-------CeEEEEe
Q 003623 483 IGGLENVKRELQETVQYPVEHPEKF--------EKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVK 547 (807)
Q Consensus 483 i~g~~~~k~~l~~~i~~~~~~~~~~--------~~~~~~~~~giLL~GppGtGKT~la~alA~~~~-------~~~i~v~ 547 (807)
|.|.+.+|+.+.-.+.......... ....++...+|||.|+||||||.+|++++.... .++..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 5678888877654432221110000 001234445699999999999999999998653 2333332
Q ss_pred ccchhhcc---cCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC--------
Q 003623 548 GPELLTMW---FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 616 (807)
Q Consensus 548 ~~~l~~~~---vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-------- 616 (807)
........ .|+.....+ .+..|. -.+++|||++.+.. .....|+..|+.-.
T Consensus 532 LTa~~~~~d~~tG~~~le~G-aLvlAd---gGtL~IDEidkms~--------------~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 532 LTASIKFNESDNGRAMIQPG-AVVLAN---GGVCCIDELDKCHN--------------ESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred ccchhhhcccccCcccccCC-cEEEcC---CCeEEecchhhCCH--------------HHHHHHHHHHhCCEEEEecCCc
Confidence 22211000 000000000 111222 24999999999743 24455666664321
Q ss_pred ---CCCcEEEeecCCCCC-------------CCCccccCCCCCcceee-cCCCCHHHHHHHHHHH
Q 003623 617 ---AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLIY-IPLPDEESRLQIFKAC 664 (807)
Q Consensus 617 ---~~~~v~vi~aTn~~~-------------~ld~allrpgRf~~~i~-~~~p~~~~r~~Il~~~ 664 (807)
-..++-||||+|..+ .|++++++ |||.+.. .+.|+.+.=..|.++.
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHH
Confidence 124788999999742 56789998 9996643 4567765544444433
No 381
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=8.6e-07 Score=96.15 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=91.0
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCC-------------------------eEEEEeccchhhcccC-----CchHH
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISVKGPELLTMWFG-----ESEAN 562 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~-------------------------~~i~v~~~~l~~~~vg-----~se~~ 562 (807)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+....-. ..-| -+-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45667999999999999999999988532 23444321100 0001 12345
Q ss_pred HHHHHHHHHh----CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCcccc
Q 003623 563 VREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL 638 (807)
Q Consensus 563 i~~lf~~a~~----~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~all 638 (807)
||.+.+.+.. ....|+++|+++.+-. ...+.||..|+... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 7777666643 3457999999998743 35677888887664 34567778888999999988
Q ss_pred CCCCCcceeecCCCCHHHHHHHHHH
Q 003623 639 RPGRLDQLIYIPLPDEESRLQIFKA 663 (807)
Q Consensus 639 rpgRf~~~i~~~~p~~~~r~~Il~~ 663 (807)
+ |+. .+.|++|+.++..+.+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 7 885 888999999887777754
No 382
>PRK06526 transposase; Provisional
Probab=98.40 E-value=1.2e-06 Score=91.67 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=48.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCeEEEEccchhhc
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
..+.+++|+||||||||+|+.+|+.++ +..+..++..+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 346789999999999999999998775 5556666666665443211 011122222222 346799999998764
No 383
>PRK09183 transposase/IS protein; Provisional
Probab=98.39 E-value=1.3e-06 Score=91.91 Aligned_cols=104 Identities=21% Similarity=0.384 Sum_probs=64.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhch-hHHHHHHHHHHHHhcCCeEEEEccchhhc
Q 003623 239 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~-~~~~i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
+..+.+++|+||||||||+|+.+++..+ +..+.++++.++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3557899999999999999999997664 5667777777776443221 112344555554 3456799999998653
Q ss_pred CCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 003623 315 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 315 ~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (807)
... .....|..+++....+.. +|.|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 332 112334555544333333 34477754
No 384
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.39 E-value=4.5e-06 Score=95.63 Aligned_cols=174 Identities=19% Similarity=0.253 Sum_probs=99.8
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-------hcccCCchH-----HHHHHHH-----HHHh----
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ---- 572 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------~~~vg~se~-----~i~~lf~-----~a~~---- 572 (807)
+.+-+||+||||||||++++++|++++..+.....+-.. ..|.+.... .-...|. .++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~ 123 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLS 123 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 344588999999999999999999999888776443221 111111110 0011221 1111
Q ss_pred -------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeec-C------CCC--------
Q 003623 573 -------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T------NRP-------- 630 (807)
Q Consensus 573 -------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~a-T------n~~-------- 630 (807)
..+.||++||+=.+... ...++-+.|...+..-... .+++|.+ + |..
T Consensus 124 ~~g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~ 192 (519)
T PF03215_consen 124 MSGSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSRCL-PLVFIISETESLSGDNSYRSNSFTAE 192 (519)
T ss_pred ccCCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCCCC-CEEEEEecccccCCCCcccccchhhh
Confidence 24679999998654332 1134444444444422111 5666666 1 111
Q ss_pred CCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccC--------CCCCccc-HHHHHHHcccCChhhHHHHHHHHHHH
Q 003623 631 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKS--------PVSKDVD-LRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 631 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~~~~-~~~la~~~~g~sg~di~~l~~~A~~~ 701 (807)
..+.+.++.-.++ .+|.|.+-.....+.-|+..+... ......+ ++.|++. |++||+.++....++
T Consensus 193 ~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~ 267 (519)
T PF03215_consen 193 RLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFW 267 (519)
T ss_pred hccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHH
Confidence 1456666542234 489999888877766666655432 1111122 5666654 457999999998888
Q ss_pred HH
Q 003623 702 AI 703 (807)
Q Consensus 702 a~ 703 (807)
+.
T Consensus 268 ~~ 269 (519)
T PF03215_consen 268 CL 269 (519)
T ss_pred hc
Confidence 87
No 385
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=2.2e-06 Score=80.24 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=47.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhh
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~--~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l 313 (807)
.+.++|+||.||||||+++.+++.+. ..++.++..+.......... +...+.+.....+.++||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 45799999999999999999998876 67778877655332111111 222222222235679999999877
No 386
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=6.1e-07 Score=94.44 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=50.9
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccC-CchHHHHHHHHHHHhCCCeEEEEcccchh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg-~se~~i~~lf~~a~~~~p~ilfiDEid~l 586 (807)
...+++|+||||||||+|+.+++... +..+..++.+++...+.. .....+..+|+.. ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 35679999999999999999998764 566677777777644321 1112355566654 245679999999875
No 387
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.37 E-value=5.5e-06 Score=85.53 Aligned_cols=181 Identities=29% Similarity=0.419 Sum_probs=95.0
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEec---h--hhhhhh
Q 003623 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCING---P--EIMSKL 282 (807)
Q Consensus 211 ~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---~i~v~~---~--~l~~~~ 282 (807)
.|-++++++|.+++.. .+...++|+||.|+|||+|++.+...+... .+++.. . ......
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4667777777766543 235689999999999999999999987431 111111 0 000000
Q ss_pred ------------------------------hchhHHHHHHHHHHHHhc-CCeEEEEccchhhc-CCcCCCchhHHHHHHH
Q 003623 283 ------------------------------AGESESNLRKAFEEAEKN-APSIIFIDEIDSIA-PKREKTHGEVERRIVS 330 (807)
Q Consensus 283 ------------------------------~g~~~~~i~~if~~a~~~-~p~il~iDEid~l~-~~~~~~~~~~~~~v~~ 330 (807)
.......+..+++..... ...+|+|||++.+. ... . ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHH
Confidence 011234456666665543 34899999999997 211 1 134556
Q ss_pred HHHHHhhccccCCeEEEEEecCCCC---C-CCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC-C-CCchhHHHHH
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIA 404 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~---~-ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~-l-~~~~~l~~la 404 (807)
.|.+.++......++.+|.+..... . .+..-.-.+|+.. +.+++.+.++-.+++........ + .++.++..+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6666666644444444333332211 0 0001111357766 99999999999999988766551 1 2566788888
Q ss_pred HhhCCCc
Q 003623 405 KDTHGYV 411 (807)
Q Consensus 405 ~~t~g~~ 411 (807)
..+.|+-
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 8888863
No 388
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.37 E-value=3.3e-06 Score=96.45 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=36.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
..|+++.|....++.+.-. +..+.+++|+|||||||||+++.+++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 3678888887765544322 23467899999999999999999998653
No 389
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.36 E-value=5.8e-06 Score=89.64 Aligned_cols=161 Identities=24% Similarity=0.402 Sum_probs=101.6
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEech-------
Q 003623 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------- 276 (807)
Q Consensus 204 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~------- 276 (807)
.+.|.-++|.+..+..|.--.. . ..-.++||-|+.|+||||++|+|+..|+..-+...|.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av----~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV----D---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc----c---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4567778998876555421111 1 2235899999999999999999999986544333331
Q ss_pred ------h-------------------hhhhhhchhHHH-H-----HHHHH-HHHh--------cCCeEEEEccchhhcCC
Q 003623 277 ------E-------------------IMSKLAGESESN-L-----RKAFE-EAEK--------NAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 277 ------~-------------------l~~~~~g~~~~~-i-----~~if~-~a~~--------~~p~il~iDEid~l~~~ 316 (807)
. +.....+.++.+ + ....+ ..+. ....|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 111111223331 1 11111 1111 123699999998763
Q ss_pred cCCCchhHHHHHHHHHHHHhhc-----------cccCCeEEEEEecCCCC-CCCHHHHccCCcceEEEeCCC-ChhHHHH
Q 003623 317 REKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLE 383 (807)
Q Consensus 317 ~~~~~~~~~~~v~~~Ll~~ld~-----------~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~i~~P-~~~~R~~ 383 (807)
..++..|+..+.. +....++++|||+|+.+ .|-|.|+. ||...+.+..| +.++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4567777776643 12234799999999864 78888887 99999988766 5688888
Q ss_pred HHHHHhc
Q 003623 384 VLRIHTK 390 (807)
Q Consensus 384 Il~~~~~ 390 (807)
|.+....
T Consensus 227 Ii~r~~~ 233 (423)
T COG1239 227 IIRRRLA 233 (423)
T ss_pred HHHHHHH
Confidence 8875543
No 390
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=1.8e-06 Score=80.76 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=69.3
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhC--CeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCC
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 593 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~--~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~ 593 (807)
+.++|+||.|||||++++.++.... .+++.++..+.......... +...|.......+.++|||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3589999999999999999998876 77788877665432111101 22333332222567999999988622
Q ss_pred CCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCC--C-ccccCCCCCcceeecCCCCHHH
Q 003623 594 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII--D-PALLRPGRLDQLIYIPLPDEES 656 (807)
Q Consensus 594 ~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~l--d-~allrpgRf~~~i~~~~p~~~~ 656 (807)
....+..+.. .. .++-|+.|++....+ + ...+ +||.. .+.+.|.+..|
T Consensus 76 -------~~~~lk~l~d---~~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVD---NG---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHH---hc---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 1223333333 11 233344444333222 1 1223 37876 78888888765
No 391
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.33 E-value=1.4e-06 Score=90.40 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=66.0
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccC---CchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
.+++|+|+||||||+|+.++|+++ +..++.+..++++..... ........+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 667888888888754322 11222334555443 457999999987531
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (807)
+.....++.+++..-- ..+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2344556666655422 1223567788863
No 392
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.33 E-value=1.1e-06 Score=104.89 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|+||+|||||||+++|++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346788899999999999999999999875
No 393
>PRK06526 transposase; Provisional
Probab=98.32 E-value=5.8e-07 Score=94.05 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=59.6
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCC-chHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
.+.+++|+||||||||+||.+++.++ +...+.+..++++...... ....+...+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 35679999999999999999999875 4555555666655432110 111222223322 34579999999886431
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (807)
.....++-+++...-. .. -+|.|||.+
T Consensus 175 ---------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ---------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ---------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 1223344444443321 22 367788875
No 394
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.4e-07 Score=103.30 Aligned_cols=48 Identities=33% Similarity=0.605 Sum_probs=40.1
Q ss_pred CcccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHh
Q 003623 477 NVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 539 (807)
Q Consensus 477 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~ 539 (807)
...|.||.|++..|+.+..... ...++||+||||||||+||+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3468999999999999876543 35679999999999999999887664
No 395
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.2e-06 Score=79.19 Aligned_cols=98 Identities=22% Similarity=0.406 Sum_probs=60.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEechhhh------h----hh----h--chhHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIM------S----KL----A--GESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l--------~~~~i~v~~~~l~------~----~~----~--g~~~~~i~~if~~a 297 (807)
...++|+||||+|||++++.++..+ ...++.++++... . .+ . .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 5679999999999999999999987 5667777764432 1 00 0 11233344444455
Q ss_pred HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEec
Q 003623 298 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 351 (807)
Q Consensus 298 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~at 351 (807)
......+|+|||+|.+. + ..+...|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555699999999974 1 345566666666 334456666554
No 396
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.32 E-value=8.5e-07 Score=95.36 Aligned_cols=101 Identities=27% Similarity=0.352 Sum_probs=63.3
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCC-chHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
..+|++|+||+|||||+|+.++|+++ +.+...+..++++...... ....+...++... ...+|+|||+..-..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 45789999999999999999999997 6677777777776443211 0112334444443 346999999976321
Q ss_pred cCCCCCCCCccHH-HHHHHHHHH-HcCCCCCCcEEEeecCCCC
Q 003623 590 RGSSVGDAGGAAD-RVLNQLLTE-MDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 590 r~~~~~~~~~~~~-~v~~~lL~~-ld~~~~~~~v~vi~aTn~~ 630 (807)
+.+.. .++..++.. +. .+.-.|.|||.+
T Consensus 232 --------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 --------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 12222 344555442 22 123577899864
No 397
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=1.3e-06 Score=90.34 Aligned_cols=165 Identities=22% Similarity=0.383 Sum_probs=91.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCC-eE--EEEec-cc--------h-------------hhcc-------------
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKG-PE--------L-------------LTMW------------- 555 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~-~~--i~v~~-~~--------l-------------~~~~------------- 555 (807)
+...++|+||.|+|||+|++.+...... .+ +.+.. .. + ....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 3567999999999999999999998732 11 11111 00 0 0000
Q ss_pred cCCchHHHHHHHHHHHhCC-CeEEEEcccchhh-hhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcE-EEeecCCC--C
Q 003623 556 FGESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNR--P 630 (807)
Q Consensus 556 vg~se~~i~~lf~~a~~~~-p~ilfiDEid~l~-~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v-~vi~aTn~--~ 630 (807)
.......+..+++...... ..||+|||++.+. ..+ ....++..|...++......++ +|+++++. .
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~ 169 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLM 169 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHH
Confidence 0112345666666665543 3899999999998 221 2356677777777775444444 44444432 1
Q ss_pred -C--CCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCC-C-CCcccHHHHHHHcccCChhhH
Q 003623 631 -D--IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSP-V-SKDVDLRALAKYTQGFSGADI 691 (807)
Q Consensus 631 -~--~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~-~~~~~~~~la~~~~g~sg~di 691 (807)
+ .-...+. +|+.. +++++.+.++..++++...+... + .++.+++.+...+.|. ++.|
T Consensus 170 ~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 170 EEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp HHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHH
T ss_pred HHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHH
Confidence 1 1123333 48887 99999999999999999876661 1 2567788888888875 3444
No 398
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.31 E-value=7.8e-06 Score=87.32 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=48.8
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCC-eEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~-~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
+..+..+-|+|.+||||||+..++.+.... .-|...+.++. |.+.+.++-+-.+ --|+|=|-..+|.++
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~----~~~~~~mrplR~~-----mQvVFQDPygSLsPR 379 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID----GLSRKEMRPLRRR-----MQVVFQDPYGSLSPR 379 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc----ccChhhhhhhhhh-----ceEEEeCCCCCCCcc
Confidence 445556999999999999999999988743 45666776653 3445555443222 249999998888664
No 399
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=3.8e-06 Score=78.67 Aligned_cols=99 Identities=24% Similarity=0.389 Sum_probs=62.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh--------CCeEEEEeccchhh----------c----ccC-Cc-hHHHHHHHHHH
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLT----------M----WFG-ES-EANVREIFDKA 570 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~--------~~~~i~v~~~~l~~----------~----~vg-~s-e~~i~~lf~~a 570 (807)
.+.++++||||+|||++++.++... ..+++.+.++...+ . ..+ .+ ......+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4569999999999999999999987 67778777654331 0 001 12 22334444555
Q ss_pred HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCC
Q 003623 571 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (807)
Q Consensus 571 ~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn 628 (807)
......+|+|||+|.+. . ..+++.|...++ ...-.++++++.+
T Consensus 84 ~~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 55555699999999974 1 446666666666 3334566666654
No 400
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.29 E-value=5.7e-06 Score=86.71 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhHH-HHHHHHHHHHhcCCeEEEEccchhh
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~~-~i~~if~~a~~~~p~il~iDEid~l 313 (807)
.+.+++|+||||+|||+||-+|+.++ |..++.+..++++......... ....-+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999998886 6778889988887765432221 111111221 133469999998765
No 401
>PRK12377 putative replication protein; Provisional
Probab=98.29 E-value=1.9e-06 Score=89.59 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=61.6
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCC--chHHHHHHHHHHHhCCCeEEEEcccchhhhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE--SEANVREIFDKARQSAPCVLFFDELDSIATQ 589 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~--se~~i~~lf~~a~~~~p~ilfiDEid~l~~~ 589 (807)
..+++|+||||||||+||.++|+.+ +..++.+..++++...... .......+++.. ....+|+|||+.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3579999999999999999999987 5667777777776532110 000112334443 3446999999976422
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC
Q 003623 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 590 r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~ 630 (807)
+.....++.+++..--+ ...-+|.|||..
T Consensus 178 --------s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 178 --------TKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred --------CHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 12334444444444321 122457789964
No 402
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.28 E-value=2.4e-06 Score=98.87 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=81.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----echhhhhhh-----hchhHHHHHHHHHHHHhcCCeEEEEccchh
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKL-----AGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v----~~~~l~~~~-----~g~~~~~i~~if~~a~~~~p~il~iDEid~ 312 (807)
..+|||+|+||||||++|+++++..+...+.. ++..+.... .|+..-.-+ .+.. ....+++|||++.
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~---A~~Gil~iDEi~~ 311 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVL---ADNGVCCIDEFDK 311 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEe---cCCCEEEEechhh
Confidence 34899999999999999999999876432221 111111100 010000000 0111 1245999999998
Q ss_pred hcCCcCCCchhHHHHHHHHHHHHhhccc-----------cCCeEEEEEecCCCC-------------CCCHHHHccCCcc
Q 003623 313 IAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRFD 368 (807)
Q Consensus 313 l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~ 368 (807)
+.+. ....|+..|+... ...++.||||+|+.+ .+++++.+ ||+
T Consensus 312 l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFd 378 (509)
T smart00350 312 MDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFD 378 (509)
T ss_pred CCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--cee
Confidence 7432 3345566664321 124678999999763 58899988 998
Q ss_pred eEE-EeCCCChhHHHHHHHHHh
Q 003623 369 REI-DIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 369 ~~i-~i~~P~~~~R~~Il~~~~ 389 (807)
..+ ....|+.+.+.+|++..+
T Consensus 379 Li~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 379 LLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eEEEecCCCChHHHHHHHHHHH
Confidence 765 457899998888887543
No 403
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.28 E-value=3e-06 Score=98.67 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.5
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.+++.+.|.||+|+|||||+++|++.+
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 346788889999999999999999998875
No 404
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.27 E-value=1.9e-06 Score=99.11 Aligned_cols=151 Identities=28% Similarity=0.414 Sum_probs=92.9
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCI 273 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~-----------l~~~~i~v 273 (807)
..|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|-.. .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 357889999999999988875411 23568999999999999999999776 45689999
Q ss_pred echhhhhhh-----hchhHH--------HHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc
Q 003623 274 NGPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK 340 (807)
Q Consensus 274 ~~~~l~~~~-----~g~~~~--------~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~ 340 (807)
||..+.... .|.... .-...|+.+. ...||||||+.+... +...|+..++.-.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCe
Confidence 997653211 111000 0011333332 358999999988532 3344555554311
Q ss_pred ---------cCCeEEEEEecCCCCCCCHHHHccCCcc-------eEEEeCCCChhHHHH
Q 003623 341 ---------SRAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (807)
Q Consensus 341 ---------~~~~v~vI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~ 383 (807)
...++-+|++|+.. +.... ..|+|. ..+.+.+|...+|.+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~e 406 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVA 406 (538)
T ss_pred EEecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchh
Confidence 12346788888754 22211 112222 235677788777764
No 405
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.26 E-value=2.2e-05 Score=91.15 Aligned_cols=150 Identities=27% Similarity=0.370 Sum_probs=93.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 282 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~ 282 (807)
.+.++.|.+..++++.+.+..- ...+.+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5677999999998888777641 1335689999999999999999998764 4689999997653211
Q ss_pred -----hchhH-------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc---------c
Q 003623 283 -----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 341 (807)
Q Consensus 283 -----~g~~~-------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~ 341 (807)
.|... ..-...|+.+ ....||||||+.+.+. +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 11000 0000123332 3468999999988532 3344555554211 1
Q ss_pred CCeEEEEEecCCCC-------CCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 342 RAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 342 ~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
...+-+|++|+..- .+.+.|.. |+. .+.+.+|...+|.+
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~e 365 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGD 365 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchh
Confidence 23577888887641 22333322 332 35677787777754
No 406
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.26 E-value=3.3e-06 Score=92.02 Aligned_cols=146 Identities=22% Similarity=0.261 Sum_probs=85.8
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhh----
Q 003623 211 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA---- 283 (807)
Q Consensus 211 ~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~---- 283 (807)
.|.+..++++.+.+..-- ....+|||+|++||||+++|++|-... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 456666777666654311 335689999999999999999996654 46899999976532111
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc---------cCCeEE
Q 003623 284 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 346 (807)
Q Consensus 284 -g~~~-------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~---------~~~~v~ 346 (807)
|... ..-...|+.+ ....||||||+.+... +...|+..++.-. ...++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-----------VQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-----------HHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0001113332 3468999999988532 3344555554311 124577
Q ss_pred EEEecCCC-------CCCCHHHHccCCcceEEEeCCCChhHHHHH
Q 003623 347 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLEV 384 (807)
Q Consensus 347 vI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R~~I 384 (807)
+|++|+.. ..+.+.|.. |+. .+.+.+|...+|.+-
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eD 178 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQED 178 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhh
Confidence 88888753 123344433 442 356777777777653
No 407
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.26 E-value=1.4e-06 Score=100.87 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|+|||||+++|++.+
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346788899999999999999999999875
No 408
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.24 E-value=2.5e-06 Score=93.38 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=95.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEechhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 278 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~----l~~~~i~v~~~~l 278 (807)
....+.++.|-+...+++++.+.. + -..+.+|||+|++||||+.+|++|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 344677899999999998888765 1 145678999999999999999998533 3678999999876
Q ss_pred hhhhhch------------hHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcc-----c-
Q 003623 279 MSKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K- 340 (807)
Q Consensus 279 ~~~~~g~------------~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-----~- 340 (807)
....... ....-..+|+.|.. ..||+|||+.+.+. ....|+..++.- .
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 4322110 01111223444433 48999999988654 234566666641 1
Q ss_pred ---cCCeEEEEEecCCCCCCCHHHHc---c--CCcceEEEeCCCChhHHH
Q 003623 341 ---SRAHVIVIGATNRPNSIDPALRR---F--GRFDREIDIGVPDEVGRL 382 (807)
Q Consensus 341 ---~~~~v~vI~atn~~~~ld~al~r---~--~Rf~~~i~i~~P~~~~R~ 382 (807)
....|.+|+||+.. ++.++.. . .++. +.+.+|...+|.
T Consensus 208 ~~~~~~dVRli~AT~~~--l~~~~~~g~dl~~rl~~--~~I~LPpLrER~ 253 (403)
T COG1221 208 SQPRPVDVRLICATTED--LEEAVLAGADLTRRLNI--LTITLPPLRERK 253 (403)
T ss_pred CCCcCCCceeeeccccC--HHHHHHhhcchhhhhcC--ceecCCChhhch
Confidence 12467888888743 3333332 0 0333 345566666654
No 409
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.24 E-value=3.3e-06 Score=92.09 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=90.7
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh--
Q 003623 207 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 281 (807)
Q Consensus 207 ~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~-- 281 (807)
++++.|.+..++++++.+..-. ....+|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4568888888888877775421 335689999999999999999997654 468999999765321
Q ss_pred ---hhchhH-------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--c-------C
Q 003623 282 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 342 (807)
Q Consensus 282 ---~~g~~~-------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~-------~ 342 (807)
..|... ......++.+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 0001122222 3468999999988532 3344555554311 0 1
Q ss_pred CeEEEEEecCCC-------CCCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 343 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 343 ~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
.++.+|++|+.. ..+.+.|.. ||. .+.+.+|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 257788877653 234445543 442 24566777777754
No 410
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=8.8e-06 Score=88.44 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=90.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-------------------------EEEechhhh---------------
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGAFF-------------------------FCINGPEIM--------------- 279 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~-------------------------i~v~~~~l~--------------- 279 (807)
.-+..+||+||+|+||+++|+.+|+.+.+.. +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4466899999999999999999998874421 111110000
Q ss_pred ---hh----h-hchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEE
Q 003623 280 ---SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 280 ---~~----~-~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (807)
++ . ..-.-..++.+.+... ....-|++||++|.+.. ...+.|+..++. ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0011234555555432 22345999999998842 345778888885 4457788
Q ss_pred EEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHH
Q 003623 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 388 (807)
Q Consensus 348 I~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~ 388 (807)
|.+|++++.+.|.+++ |+ ..+.+++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999998 77 67899999999888888653
No 411
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.23 E-value=1.3e-05 Score=78.13 Aligned_cols=132 Identities=25% Similarity=0.372 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 003623 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------------- 269 (807)
Q Consensus 212 G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~---------------------- 269 (807)
|+++.++.|.+.+..- .-+..+||+||+|+||+++|+++|..+-..
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 6677777777777541 234579999999999999999999886321
Q ss_pred -EEEEechhhhhhhhchhHHHHHHHHHHHH----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCe
Q 003623 270 -FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 344 (807)
Q Consensus 270 -~i~v~~~~l~~~~~g~~~~~i~~if~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~ 344 (807)
++.++...... .-.-..++.+.+... ....-|++|||+|.+. ....+.|+..|+... .+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHSTT--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCCC--CC
Confidence 23332211100 012345555555432 2345699999999874 335678888888754 46
Q ss_pred EEEEEecCCCCCCCHHHHccCCcceEEEeC
Q 003623 345 VIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 345 v~vI~atn~~~~ld~al~r~~Rf~~~i~i~ 374 (807)
+.+|.+|+.++.+-|.+++ |. ..+.++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 7777788889999999998 65 334443
No 412
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.23 E-value=4.1e-06 Score=97.42 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|+|||||+++|++.+
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345778889999999999999999999875
No 413
>PRK06921 hypothetical protein; Provisional
Probab=98.22 E-value=6.6e-06 Score=86.87 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchh
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l----~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~ 312 (807)
...+++|+||||+|||+|+.+||+++ +..++++...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999986 45567777666554332211 1112222222 3467999999954
No 414
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=94.26 Aligned_cols=153 Identities=29% Similarity=0.418 Sum_probs=95.6
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhh--
Q 003623 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI-- 278 (807)
Q Consensus 204 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l-- 278 (807)
..+|++|.|-+.++.++.+....- ......|||.|.+||||..+|++|-+.. +.+|+.+||.-+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 457889999998888877766541 2345689999999999999999996654 678999999543
Q ss_pred -------hhhhhchhHHH----HHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc--------c
Q 003623 279 -------MSKLAGESESN----LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG--------L 339 (807)
Q Consensus 279 -------~~~~~g~~~~~----i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~--------~ 339 (807)
++...|..... -.-.|+.|.. .-||+|||..+.. .+...|+..+.. .
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCC
Confidence 22111111111 1234555543 3799999987642 233445554432 1
Q ss_pred c-cCCeEEEEEecCCCCCCCHHHHccCCcce-------EEEeCCCChhHHHHH
Q 003623 340 K-SRAHVIVIGATNRPNSIDPALRRFGRFDR-------EIDIGVPDEVGRLEV 384 (807)
Q Consensus 340 ~-~~~~v~vI~atn~~~~ld~al~r~~Rf~~-------~i~i~~P~~~~R~~I 384 (807)
. ....|-||+|||+. +..++. -|+|-. .+.+.+|...+|.+-
T Consensus 376 ~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eD 425 (560)
T COG3829 376 KPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKED 425 (560)
T ss_pred CceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcch
Confidence 1 13468899999975 322222 133322 356777877777653
No 415
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.22 E-value=1.1e-06 Score=87.19 Aligned_cols=70 Identities=31% Similarity=0.546 Sum_probs=47.1
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCC-chHHHHHHHHHHHhCCCeEEEEcccch
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~-se~~i~~lf~~a~~~~p~ilfiDEid~ 585 (807)
...+++|+||||||||+||.++++++ +.....++.++++...-.. ........++.... ..+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 45689999999999999999999875 6778888888887643211 11123344444443 35999999865
No 416
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.22 E-value=6.5e-06 Score=96.55 Aligned_cols=132 Identities=18% Similarity=0.303 Sum_probs=85.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEechhhhhhhhchhHHHHHHHHHHH---------HhcCCeEEEEccch
Q 003623 243 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESESNLRKAFEEA---------EKNAPSIIFIDEID 311 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~~--~~i~v~~~~l~~~~~g~~~~~i~~if~~a---------~~~~p~il~iDEid 311 (807)
.+|||.|+||||||+++++++..++. +|+.+..........|.. .+...+... ......+||+||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999998764 477776432222233321 011001100 01122599999999
Q ss_pred hhcCCcCCCchhHHHHHHHHHHHHhhccc-----------cCCeEEEEEecCCCC---CCCHHHHccCCcceEEEeC-CC
Q 003623 312 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG-VP 376 (807)
Q Consensus 312 ~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~i~-~P 376 (807)
.+.+ .+...|+..|+.-. ....+.+|+++|..+ .+.++|.. ||...+.+. +|
T Consensus 95 rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 8753 34566777775321 123578889888765 68888887 898887766 45
Q ss_pred ChhHHHHHHHHHh
Q 003623 377 DEVGRLEVLRIHT 389 (807)
Q Consensus 377 ~~~~R~~Il~~~~ 389 (807)
...+|.+|++...
T Consensus 162 ~~~er~eil~~~~ 174 (589)
T TIGR02031 162 SQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHH
Confidence 6777888887654
No 417
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.22 E-value=5.6e-06 Score=96.63 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=26.8
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|||||||+++|++..
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 346788899999999999999999999985
No 418
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.22 E-value=1.9e-06 Score=93.45 Aligned_cols=70 Identities=29% Similarity=0.488 Sum_probs=48.9
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccC---CchHHHHHHHHHHHhCCCeEEEEcccchh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSI 586 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg---~se~~i~~lf~~a~~~~p~ilfiDEid~l 586 (807)
..+++|+||+|||||+|+.++|+++ +..++.+..++++..... .........++... ...+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 3779999999999999999999986 677888888887654311 01111112233333 3369999999775
No 419
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=5.9e-05 Score=81.47 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=87.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhchhHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a 297 (807)
+..+||+||+|+||+++|+.+|+.+-+. ++.+...+ ++. -.-..+|.+.+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHHH
Confidence 4579999999999999999999887431 12221100 111 1234455554443
Q ss_pred H----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEe
Q 003623 298 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i 373 (807)
. ....-|++||++|.+. ....+.|+..++. ...++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 2 3344699999999884 2345778888886 34567777788889999999998 66 56789
Q ss_pred CCCChhHHHHHHHHH
Q 003623 374 GVPDEVGRLEVLRIH 388 (807)
Q Consensus 374 ~~P~~~~R~~Il~~~ 388 (807)
.+|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999988887777654
No 420
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=6.6e-06 Score=83.57 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..|.|.||+|||||||.+.||+..
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999875
No 421
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.7e-06 Score=89.17 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=49.0
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhccc-----CCchHHHHHHHHHHHhCCCeEEEEcccch
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~v-----g~se~~i~~lf~~a~~~~p~ilfiDEid~ 585 (807)
.+.+++|+||||+|||+||.|+++++ |..++.+..++++...- |..+..+. ... ....+|||||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~---~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLL---REL--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHH---HHh--hcCCEEEEecccC
Confidence 56789999999999999999999987 56788888888875422 12222222 212 2335999999977
Q ss_pred h
Q 003623 586 I 586 (807)
Q Consensus 586 l 586 (807)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 422
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.21 E-value=5.1e-06 Score=96.27 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|+|||||++.|++.+
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 446788889999999999999999998875
No 423
>PRK12377 putative replication protein; Provisional
Probab=98.21 E-value=4.6e-06 Score=86.73 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=48.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhH--HHHHHHHHHHHhcCCeEEEEccchhh
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~--~~i~~if~~a~~~~p~il~iDEid~l 313 (807)
..+++|+||||||||+||.+|++.+ +..++.++.+++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999887 456777877777654332111 0112233332 45679999999754
No 424
>PLN03073 ABC transporter F family; Provisional
Probab=98.20 E-value=3.5e-06 Score=100.90 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=25.9
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (807)
+.+.++..+.|+||+|+|||||++.|++.
T Consensus 198 l~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 198 VTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45678889999999999999999999974
No 425
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.19 E-value=1.6e-05 Score=92.36 Aligned_cols=153 Identities=23% Similarity=0.361 Sum_probs=93.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh
Q 003623 203 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 279 (807)
Q Consensus 203 ~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~ 279 (807)
...+|+++.|.+..++++.+.+..-- ....+|||+|++||||+++|+++-... ..+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45688999999998888776664211 224579999999999999999986543 4679999997653
Q ss_pred hhh-----hchhH-------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-------
Q 003623 280 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK------- 340 (807)
Q Consensus 280 ~~~-----~g~~~-------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~------- 340 (807)
... .|... ..-...|+.+ ....||||||+.+.+. +...|+..+..-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11000 0001123333 2458999999988532 2244555554311
Q ss_pred --cCCeEEEEEecCCC-C------CCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 341 --SRAHVIVIGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 341 --~~~~v~vI~atn~~-~------~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
...++.+|++|+.+ . .+.+.|.. |+.. +.+.+|...+|.+
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~ 382 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQ 382 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChh
Confidence 12356788877654 1 23344443 5433 6677777777763
No 426
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.19 E-value=2.2e-06 Score=84.88 Aligned_cols=102 Identities=23% Similarity=0.424 Sum_probs=59.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchh-HHHHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~-~~~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
..+.+++|+||+|+|||+||.+++.++ +..+.+++.++++....... .......++... .+.+|+|||+.....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~~ 122 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEPL 122 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceeee
Confidence 457899999999999999999998775 67788888888876543221 112233344433 456999999853311
Q ss_pred CcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 003623 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (807)
.......|..+++....+.. . |.|||..
T Consensus 123 ---------~~~~~~~l~~ii~~R~~~~~-t-IiTSN~~ 150 (178)
T PF01695_consen 123 ---------SEWEAELLFEIIDERYERKP-T-IITSNLS 150 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E-E-EEEESS-
T ss_pred ---------cccccccchhhhhHhhcccC-e-EeeCCCc
Confidence 11223445555554433333 3 3377753
No 427
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.19 E-value=9.8e-06 Score=97.56 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=92.7
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (807)
..|+++.|.+..++.+.+.+..-- ....+|||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457789999988888877665311 235689999999999999999997754 568999999765321
Q ss_pred -----hhch--------hHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--------
Q 003623 282 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (807)
Q Consensus 282 -----~~g~--------~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (807)
..|. ...... .|+.+ ....||||||+.+... +...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a---~~GtL~Ldei~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELA---DKSSLFLDEVGDMPLE-----------LQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhc---CCCeEEEechhhCCHH-----------HHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111121 23332 3469999999987432 3345555554311
Q ss_pred -cCCeEEEEEecCCCC-------CCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 341 -SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 341 -~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
...++.+|++|+..- .+...|.. |+ ..+.+.+|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 124677888887541 11222221 22 245677888888765
No 428
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.19 E-value=9.7e-06 Score=87.92 Aligned_cols=100 Identities=22% Similarity=0.385 Sum_probs=61.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchh---HHHHHHHHHHHHhcCCeEEEEccchhhcC
Q 003623 242 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSIAP 315 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~---~~~i~~if~~a~~~~p~il~iDEid~l~~ 315 (807)
..+++|+||+|+|||+|+.++|+++ +..+++++..+++....... .......++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 66788888888766442210 01111113332 2457999999976532
Q ss_pred CcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCC
Q 003623 316 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 353 (807)
Q Consensus 316 ~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~ 353 (807)
. ......|..+++.......-++| |||.
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 1 12234556666554333333444 5553
No 429
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.19 E-value=3.1e-06 Score=98.27 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+|+|||||++.|++.+
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788889999999999999999999875
No 430
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.18 E-value=5.4e-06 Score=96.95 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|+||+|||||||++.|++.+
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999875
No 431
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.18 E-value=4.7e-06 Score=86.41 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchh---HHHHHHHHHHHHhcCCeEEEEccchhh
Q 003623 243 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~---~~~i~~if~~a~~~~p~il~iDEid~l 313 (807)
.+++|+|+||||||+|+.+|+..+ +..++.++..++........ ......+++.. ....+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 589999999999999999999987 66778888888775443321 11223344443 35679999999765
No 432
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.17 E-value=3.9e-06 Score=96.68 Aligned_cols=153 Identities=28% Similarity=0.412 Sum_probs=91.6
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (807)
..|+++.|.+..++++++.+..-- ....+|||+|++||||+++|++|-... +.+|+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 467889999999999888775311 235689999999999999999997653 568999999765321
Q ss_pred h-----hchhH--------HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--------
Q 003623 282 L-----AGESE--------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 340 (807)
Q Consensus 282 ~-----~g~~~--------~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-------- 340 (807)
. .|..+ ..-..+|+.+ ....||||||+.+... +...|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP-----------LQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH-----------HHHHHHHHHhcCcEEecCCCc
Confidence 1 11000 0011233333 2358999999988532 3344555554211
Q ss_pred -cCCeEEEEEecCCCC--CCCH-HHHc--cCCcceEEEeCCCChhHHHH
Q 003623 341 -SRAHVIVIGATNRPN--SIDP-ALRR--FGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 341 -~~~~v~vI~atn~~~--~ld~-al~r--~~Rf~~~i~i~~P~~~~R~~ 383 (807)
...++-+|++|+..- .+.. .++. ..|+. .+.+.+|...+|.+
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~e 391 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPG 391 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchh
Confidence 112457888887541 1111 1111 11332 35667777777764
No 433
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.16 E-value=3.1e-06 Score=96.94 Aligned_cols=171 Identities=24% Similarity=0.281 Sum_probs=96.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcc-----cCCch-------HHHHHHHHHHHhCCCeEEE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLF 579 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se-------~~i~~lf~~a~~~~p~ilf 579 (807)
...++|+|++||||+++|+++...+ ..+|+.++|..+...+ +|... ......|..| ...+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEE
Confidence 4569999999999999999998876 4689999988763211 11000 0000112222 345899
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCC-------CCCCccccCCCCC
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL 643 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (807)
||||+.|.. .+...|+..++.-. . ..++-+|+||+.. ..+.+.|.. |+
T Consensus 239 l~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l 302 (445)
T TIGR02915 239 LDEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI 302 (445)
T ss_pred EechhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh
Confidence 999999753 35566666665321 0 1257788888764 233344433 44
Q ss_pred cceeecCCCCHHHHH----HHHHHHhccC----CC----CCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHH
Q 003623 644 DQLIYIPLPDEESRL----QIFKACLRKS----PV----SKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 705 (807)
Q Consensus 644 ~~~i~~~~p~~~~r~----~Il~~~l~~~----~~----~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~ 705 (807)
. .+.+..|...+|. .+++.++++. .. -.+.-+..|....---+-++|+++++.|+..+-..
T Consensus 303 ~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~~ 375 (445)
T TIGR02915 303 A-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGN 375 (445)
T ss_pred c-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 3 2334444444443 3445454332 11 12223444444432223489999999998765443
No 434
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=6e-05 Score=83.13 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.2
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVAN 264 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~ 264 (807)
+.+..++..-|+|++|+|||||.|+||+
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4556788899999999999999999998
No 435
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.15 E-value=1.1e-06 Score=83.37 Aligned_cols=60 Identities=32% Similarity=0.551 Sum_probs=43.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHhCC---eEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhh
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 588 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~~~---~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~ 588 (807)
...|+|+|++||||+++|+++....+. +|+.+++.++. .++++.+ ....+||+|||.|..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH
Confidence 456999999999999999999988753 55655554422 4466665 445999999999854
No 436
>PRK06921 hypothetical protein; Provisional
Probab=98.15 E-value=2.6e-06 Score=89.88 Aligned_cols=69 Identities=25% Similarity=0.243 Sum_probs=45.5
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHh----CCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccch
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 585 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~----~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~ 585 (807)
...+++|+||||+|||+|+.++|+++ +..++.+...+++..... ........++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEEecccc
Confidence 35679999999999999999999985 456677776666543211 111122222332 2346999999954
No 437
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=6e-07 Score=104.35 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=32.3
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEechhh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEI 278 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~----~~i~v~~~~l 278 (807)
+.+.++..+.|.||+|+|||||++.|++.+.. --+.+++.++
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 34678889999999999999999999998753 1245555443
No 438
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.14 E-value=2.3e-05 Score=81.65 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=97.2
Q ss_pred ccccccchhhhhhhhhhcccccCCChhhhhhhcCCCCcceeeeCCCCCcHHHHHHHHHHHhCCe--E----EEEeccchh
Q 003623 479 NWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--F----ISVKGPELL 552 (807)
Q Consensus 479 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~giLL~GppGtGKT~la~alA~~~~~~--~----i~v~~~~l~ 552 (807)
..+++.+.+++...+.+... .....++|+|||||||||+...+.|..+-.+ + ..++.++-.
T Consensus 39 ~l~dv~~~~ei~st~~~~~~-------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYSG-------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred hhhhHhcCCchhhHHHHhcc-------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 34556666665555554422 2223389999999999999999999987543 1 112222211
Q ss_pred hcccCCchHHHHHHHHHHHh-------CCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEee
Q 003623 553 TMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 625 (807)
Q Consensus 553 ~~~vg~se~~i~~lf~~a~~-------~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~ 625 (807)
+ .+ ..+.--..|..++. ..+..+++||+|.+... ..++|-..+..+..+ +-++.
T Consensus 106 g--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~--------------AQnALRRviek~t~n--~rF~i 166 (360)
T KOG0990|consen 106 G--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD--------------AQNALRRVIEKYTAN--TRFAT 166 (360)
T ss_pred C--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH--------------HHHHHHHHHHHhccc--eEEEE
Confidence 1 01 12233345665553 37789999999997542 334444445444443 34445
Q ss_pred cCCCCCCCCccccCCCCCcceeecCCCCHHHHHHHHHHHhccCCC
Q 003623 626 ATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPV 670 (807)
Q Consensus 626 aTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 670 (807)
-+|.|..+-|++.+ ||. .+.|.+.+...-..++.++....+.
T Consensus 167 i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 67999999999998 988 5666666766666677666654443
No 439
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.14 E-value=7.6e-06 Score=95.72 Aligned_cols=125 Identities=26% Similarity=0.415 Sum_probs=79.9
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 281 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~ 281 (807)
..++++.|.+..++++.+.+...- ....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 467889999999999887776421 335689999999999999999998774 468999999765321
Q ss_pred hh-----chhHH----HH---HHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc--c------
Q 003623 282 LA-----GESES----NL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S------ 341 (807)
Q Consensus 282 ~~-----g~~~~----~i---~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~--~------ 341 (807)
.. |.... .. ...|+. .....||||||+.+.+. +...|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCce
Confidence 10 10000 00 001222 23468999999988532 3344555554311 0
Q ss_pred -CCeEEEEEecCCC
Q 003623 342 -RAHVIVIGATNRP 354 (807)
Q Consensus 342 -~~~v~vI~atn~~ 354 (807)
..++.+|++|+..
T Consensus 328 ~~~~~riI~~s~~~ 341 (534)
T TIGR01817 328 LKVDVRLVAATNRD 341 (534)
T ss_pred EeecEEEEEeCCCC
Confidence 1247788887754
No 440
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=5.3e-05 Score=84.06 Aligned_cols=173 Identities=16% Similarity=0.213 Sum_probs=99.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchh-------------h-cccCCchHHHHHHHHHHH----------
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------------T-MWFGESEANVREIFDKAR---------- 571 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~-------------~-~~vg~se~~i~~lf~~a~---------- 571 (807)
+-+||+||+||||||.++.|+.+++..++....+-.. . .|...-. ........+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~~g~ 189 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQMSGD 189 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHH-HHHHHHHHHHhhchhhhccc
Confidence 3489999999999999999999999988877632211 0 1111100 0111112221
Q ss_pred --hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCC------CCC
Q 003623 572 --QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRP------GRL 643 (807)
Q Consensus 572 --~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrp------gRf 643 (807)
...+.+|++||+=..+... ..+.+..+|.++-......-|++|.=++.++..++-.+.| -|+
T Consensus 190 ~~~~~~~liLveDLPn~~~~d----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 190 DLRTDKKLILVEDLPNQFYRD----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred ccccCceEEEeeccchhhhhh----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 1335699999986654420 2334455555544433333344444344455555444332 155
Q ss_pred cceeecCCCCHHHHHHHHHHHhccCCCC-------CcccHHHHHHHcccCChhhHHHHHHHHHHHHHH
Q 003623 644 DQLIYIPLPDEESRLQIFKACLRKSPVS-------KDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 644 ~~~i~~~~p~~~~r~~Il~~~l~~~~~~-------~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~ 704 (807)
+ .|.|.|-...-.+..|+..++..... ....++.++.. +|+||+..+....+.+..
T Consensus 260 ~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 260 S-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSSSK 322 (634)
T ss_pred c-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhccc
Confidence 4 78888888877888787776543221 12233333332 467999999988888643
No 441
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=7.8e-05 Score=81.30 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=95.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEechhhhhhhhchhHHHHHHHHHH
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEE 296 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~~~------------------------~i~v~~~~l~~~~~g~~~~~i~~if~~ 296 (807)
-+..+||+||+|+||+++|.++|+.+-+. +..+... -.+. .-.-..+|.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~-~~~~--~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE-KGKS--SLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc-cccc--cCCHHHHHHHHHH
Confidence 35579999999999999999999887321 1222110 0000 0122345555444
Q ss_pred H----HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEE
Q 003623 297 A----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREID 372 (807)
Q Consensus 297 a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~ 372 (807)
. .....-|++||++|.+. ....+.|++.++.- ..++++|.+|+.++.+-|.+++ |.. .+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 3 33445699999999884 23457788888863 4567888889999999999998 664 578
Q ss_pred eCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCch
Q 003623 373 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (807)
Q Consensus 373 i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 412 (807)
+++|+.++-.+.|... .... ......++..+.|-.+
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHH
Confidence 8888888777766532 1222 2234455556666443
No 442
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.12 E-value=5.7e-05 Score=86.69 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=52.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 003623 200 NRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 273 (807)
Q Consensus 200 ~~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~i~v 273 (807)
+++.+.+.+||.-..+-+++++.++...+. +..+.+-+||+|||||||||+++.||++++..+..-
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 456677888899999999999998874321 223455789999999999999999999998776543
No 443
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.12 E-value=1.4e-05 Score=95.54 Aligned_cols=152 Identities=24% Similarity=0.364 Sum_probs=91.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhh
Q 003623 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 280 (807)
Q Consensus 204 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~ 280 (807)
..+|+++.|.+..++++.+.+..-. ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 3468889999988888776665321 235579999999999999999998765 46899999976532
Q ss_pred -----hhhchh----HHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-----c----C
Q 003623 281 -----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----R 342 (807)
Q Consensus 281 -----~~~g~~----~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----~----~ 342 (807)
.+.|.. .......|+. .....||||||+.+... +...|+..++.-. . .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEE
Confidence 111110 0000001222 23468999999988532 2344555553211 0 1
Q ss_pred CeEEEEEecCCCCCCCHHHHccCCcc-------eEEEeCCCChhHHHH
Q 003623 343 AHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLE 383 (807)
Q Consensus 343 ~~v~vI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~ 383 (807)
.++.+|++|+.. +. .+...++|. ..+.+.+|...+|.+
T Consensus 456 ~~~riI~~t~~~--l~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~ 500 (638)
T PRK11388 456 VDVRVIATTTAD--LA-MLVEQNRFSRQLYYALHAFEITIPPLRMRRE 500 (638)
T ss_pred eeEEEEEeccCC--HH-HHHhcCCChHHHhhhhceeEEeCCChhhhhh
Confidence 257788888754 21 122223331 246677888888754
No 444
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.11 E-value=1.5e-05 Score=91.79 Aligned_cols=166 Identities=25% Similarity=0.331 Sum_probs=101.0
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHH---------------HhCCCe
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKA---------------RQSAPC 576 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a---------------~~~~p~ 576 (807)
...+++.|++|||||++|+++...+ +.+|+.++|..+.... .-..+|... ......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4459999999999999999999886 4699999998763211 111222211 112235
Q ss_pred EEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCC-------CCCCccccCC
Q 003623 577 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRP 640 (807)
Q Consensus 577 ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allrp 640 (807)
.+|||||+.|.. .+...|+..++... . ..++-+|+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~- 299 (469)
T PRK10923 235 TLFLDEIGDMPL--------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH- 299 (469)
T ss_pred EEEEeccccCCH--------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH-
Confidence 899999999754 34566677665421 1 1246788888763 234455555
Q ss_pred CCC-cceeecCCCCH--HHHHHHHHHHhccC----C--C--CCcccHHHHHHHcccCCh--hhHHHHHHHHHHHHHH
Q 003623 641 GRL-DQLIYIPLPDE--ESRLQIFKACLRKS----P--V--SKDVDLRALAKYTQGFSG--ADITEICQRACKYAIR 704 (807)
Q Consensus 641 gRf-~~~i~~~~p~~--~~r~~Il~~~l~~~----~--~--~~~~~~~~la~~~~g~sg--~di~~l~~~A~~~a~~ 704 (807)
|| ...|.+|+... ++...+++.++++. . . ..+.-+..|.... |.| ++|+++++.|...+-.
T Consensus 300 -~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--wpgNv~eL~~~i~~~~~~~~~ 373 (469)
T PRK10923 300 -RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLA--WPGNVRQLENTCRWLTVMAAG 373 (469)
T ss_pred -HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC--CCChHHHHHHHHHHHHHhCCC
Confidence 66 35666666532 44455666665432 1 1 1222344444443 554 8999999998876543
No 445
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.11 E-value=1.7e-05 Score=80.90 Aligned_cols=115 Identities=22% Similarity=0.330 Sum_probs=65.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh--------hhhh---------------chhHHHHH
Q 003623 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM--------SKLA---------------GESESNLR 291 (807)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~--------~~~~---------------g~~~~~i~ 291 (807)
|+.++.-++|+||||||||+++..++... +...++++...+. .... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 67888899999999999999999887543 5566777664310 0000 01112244
Q ss_pred HHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 292 KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 292 ~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
.+.+......+.+++||-+..+.............+.+..++..+..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444455567899999999988643211111111112222233343443445566665543
No 446
>PF05729 NACHT: NACHT domain
Probab=98.10 E-value=2.4e-05 Score=76.13 Aligned_cols=141 Identities=21% Similarity=0.316 Sum_probs=75.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---------cEEEEechhhhhh------------hhchhHHHHHHHHH-HHHhcC
Q 003623 244 GILLYGPPGSGKTLIARAVANETGA---------FFFCINGPEIMSK------------LAGESESNLRKAFE-EAEKNA 301 (807)
Q Consensus 244 ~vLL~GppGtGKTtLar~la~~l~~---------~~i~v~~~~l~~~------------~~g~~~~~i~~if~-~a~~~~ 301 (807)
-++|+|+||+|||++++.++..+.. .++.+...+.... ........+...+. ......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999877521 1233333322111 00111111121122 223455
Q ss_pred CeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc-cccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhH
Q 003623 302 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 380 (807)
Q Consensus 302 p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~ 380 (807)
..+++||.+|.+...... .........+..++.. .....++++ ++.+ ..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~lii--t~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLII--TSRP-RAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEE--EEcC-ChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678999999998764332 1122333444455544 222333333 3332 22211 33322222568888889999
Q ss_pred HHHHHHHHhcC
Q 003623 381 RLEVLRIHTKN 391 (807)
Q Consensus 381 R~~Il~~~~~~ 391 (807)
..++++.++++
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99988877643
No 447
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.10 E-value=1.2e-05 Score=93.38 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888899999999999999999998764
No 448
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.10 E-value=1.3e-05 Score=86.20 Aligned_cols=71 Identities=25% Similarity=0.483 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhhhchhH-HHHHHHHHHHHhcCCeEEEEccchhh
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSI 313 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~~g~~~-~~i~~if~~a~~~~p~il~iDEid~l 313 (807)
.++|++|+||+|||||+|+.++|+++ +..+..+..++++........ ..+...++.. ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 46799999999999999999999987 666777887777654432211 1123333333 34579999998653
No 449
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.8e-06 Score=94.79 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=40.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 204 ~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
...|.||.|++..++.+.-... -+.++|++||||||||+||+.+.+.++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 4578899999999888765543 367899999999999999999987765
No 450
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.10 E-value=2.9e-05 Score=73.50 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.+.++..++|.||+|||||||.+++|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4567889999999999999999999999865
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=2.3e-05 Score=75.88 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=62.9
Q ss_pred eeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc----------------------ccCC--chHHHHHHHHHH
Q 003623 518 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----------------------WFGE--SEANVREIFDKA 570 (807)
Q Consensus 518 iLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~----------------------~vg~--se~~i~~lf~~a 570 (807)
++|+||||+|||+++..++... +.+.+.+........ +... .+......+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999886 455555544332210 0000 111122334556
Q ss_pred HhCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCC
Q 003623 571 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 571 ~~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~ 631 (807)
....|.++++||+..+................+.+..++..+. ..++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6778899999999998764211000111223344445544443 23556666666554
No 452
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00012 Score=79.06 Aligned_cols=150 Identities=19% Similarity=0.292 Sum_probs=93.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEEEe-chhhhh-h-hhchhHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF---------------------FFCIN-GPEIMS-K-LAGESESNLRKAFEEA 297 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~---------------------~i~v~-~~~l~~-~-~~g~~~~~i~~if~~a 297 (807)
+..+||+||+|+||+++|.++|..+-+. +..+. .++-.+ + ...-.-..+|.+.+..
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4569999999999999999999876321 11121 000000 0 0001234456655544
Q ss_pred Hh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEe
Q 003623 298 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 373 (807)
Q Consensus 298 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i 373 (807)
.. ..--|++||++|.+. ....+.|++.++... .++++|.+|+.++.+-|.+++ |+ ..+.+
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEeeC
Confidence 32 233699999999884 234577888888744 356666778888999999998 66 56788
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhhCCCch
Q 003623 374 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (807)
Q Consensus 374 ~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 412 (807)
+.|+.++-.+.|... ... ..+...++..+.|-.+
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 999988777777532 122 2223455566666444
No 453
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.09 E-value=9.1e-06 Score=84.04 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+.+++.+.|.||+|||||||++++++.+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467788899999999999999999998764
No 454
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.08 E-value=1.1e-05 Score=91.78 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEEechhhhh--------------------------hhhchhHHHH
Q 003623 239 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS--------------------------KLAGESESNL 290 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~~~~--i~v~~~~l~~--------------------------~~~g~~~~~i 290 (807)
+..+.+++|+||||||||++++.+++.+...- ..+.+..+.+ ...|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 35678899999999999999999998764221 1111111110 0011100000
Q ss_pred HHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccc-----------cCCeEEEEEecCCCC----
Q 003623 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---- 355 (807)
Q Consensus 291 ~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~-----------~~~~v~vI~atn~~~---- 355 (807)
...+..|. ..+||+||++.+. ..+...|++.|+.-. ...++.+|+|+|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11233332 3599999997653 345566666664211 124688999999752
Q ss_pred -----------------CCCHHHHccCCcceEEEeCCCChh
Q 003623 356 -----------------SIDPALRRFGRFDREIDIGVPDEV 379 (807)
Q Consensus 356 -----------------~ld~al~r~~Rf~~~i~i~~P~~~ 379 (807)
.++.++.. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24556665 99999999988865
No 455
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.07 E-value=5.1e-06 Score=87.97 Aligned_cols=139 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEechhhhhhhhchhHHHHHHHHHHH-----------HhcCCeEE
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGAFF---FCINGPEIMSKLAGESESNLRKAFEEA-----------EKNAPSII 305 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~~~---i~v~~~~l~~~~~g~~~~~i~~if~~a-----------~~~~p~il 305 (807)
..++++||+||+|||||++++.+-..+...- ..++.+.. .+...+..+++.. ..++..++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 4578999999999999999998776654332 23333221 1122232222211 11234799
Q ss_pred EEccchhhcCCcCCCchhHHHHHHHHHHHHhhcccc--------CCeEEEEEecCCCC---CCCHHHHccCCcceEEEeC
Q 003623 306 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--------RAHVIVIGATNRPN---SIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 306 ~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~--------~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~i~ 374 (807)
||||++...++...... .-.+++|+++.- |+.. -.++.++|++++.. .+++.+. |....+.++
T Consensus 105 fiDDlN~p~~d~ygtq~--~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~---r~f~i~~~~ 178 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGTQP--PIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL---RHFNILNIP 178 (272)
T ss_dssp EEETTT-S---TTS--H--HHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH---TTEEEEE--
T ss_pred EecccCCCCCCCCCCcC--HHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh---hheEEEEec
Confidence 99999876655433221 123444444321 2211 13577889988653 3556665 455789999
Q ss_pred CCChhHHHHHHHHHhc
Q 003623 375 VPDEVGRLEVLRIHTK 390 (807)
Q Consensus 375 ~P~~~~R~~Il~~~~~ 390 (807)
.|+.+....|+...+.
T Consensus 179 ~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh
Confidence 9999999888876543
No 456
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=2.6e-05 Score=84.74 Aligned_cols=132 Identities=20% Similarity=0.296 Sum_probs=85.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEechh---hhhhh-hchhHHHH
Q 003623 240 KPPKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFCINGPE---IMSKL-AGESESNL 290 (807)
Q Consensus 240 ~~~~~vLL~GppGtGKTtLar~la~~l~~-------------------------~~i~v~~~~---l~~~~-~g~~~~~i 290 (807)
.-+..+||+||+|+|||++|+.+|+.+.+ .++.+.... -.++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34557999999999999999999988642 122232210 00000 00123456
Q ss_pred HHHHHHHHh----cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCC
Q 003623 291 RKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGR 366 (807)
Q Consensus 291 ~~if~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~R 366 (807)
|.+.+.+.. ...-|++||+++.+-+ ...+.|+..++.... .+.+|.+|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--H
Confidence 666655543 3345888899887732 344667777776542 35566688888899999887 5
Q ss_pred cceEEEeCCCChhHHHHHHHH
Q 003623 367 FDREIDIGVPDEVGRLEVLRI 387 (807)
Q Consensus 367 f~~~i~i~~P~~~~R~~Il~~ 387 (807)
. ..+.++.|+.++-.+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 4 5578888888887777653
No 457
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.05 E-value=4.4e-05 Score=77.88 Aligned_cols=155 Identities=19% Similarity=0.320 Sum_probs=98.8
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh-C--CeEEEEeccch-------------hhcc--------cCCchH-HHHHHHHHH
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC-Q--ANFISVKGPEL-------------LTMW--------FGESEA-NVREIFDKA 570 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~-~--~~~i~v~~~~l-------------~~~~--------vg~se~-~i~~lf~~a 570 (807)
.++++|||+|+||-|.+.++-+++ | ..-+.+....+ .+.| .|...+ -+.++.+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 579999999999999999998886 2 11111111111 0111 233333 244455443
Q ss_pred HhC---------CCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCC
Q 003623 571 RQS---------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPG 641 (807)
Q Consensus 571 ~~~---------~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpg 641 (807)
.+. ...|++|-|+|.|-.. ....|-..|+...+ ++-+|..+|....+-+++.+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--
Confidence 332 3479999999998542 23444455555443 34456667887788888876
Q ss_pred CCcceeecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHcccCChhhHHH
Q 003623 642 RLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 693 (807)
Q Consensus 642 Rf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~sg~di~~ 693 (807)
|+- .|.+|.|+.++...++...+++..+....+ +..+|+.+ +++++.
T Consensus 177 RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS----~~nLRr 224 (351)
T KOG2035|consen 177 RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS----NRNLRR 224 (351)
T ss_pred hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh----cccHHH
Confidence 764 789999999999999999998877665443 44666654 455554
No 458
>PRK15115 response regulator GlrR; Provisional
Probab=98.05 E-value=1.7e-05 Score=90.70 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=116.5
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHHH---------------HhCCCeE
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKA---------------RQSAPCV 577 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a---------------~~~~p~i 577 (807)
..++|+|++|||||++|+++.... +.+|+.++|..+.... .-..+|..+ .......
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 459999999999999999998875 4689999987653211 111222211 1122358
Q ss_pred EEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCCCCCCccccCCCCCcc---
Q 003623 578 LFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ--- 645 (807)
Q Consensus 578 lfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~~--- 645 (807)
|||||||.|.. .....|+..|+.-. . ..++.+|+||+.. ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 232 LFLDEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred EEEEccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 99999999854 24566666665321 1 1257888888863 4444433 56632
Q ss_pred ----eeecCCCCHHHH----HHHHHHHhccC----C--C--CCcccHHHHHHHcccCChhhHHHHHHHHHHHHHHHHHHH
Q 003623 646 ----LIYIPLPDEESR----LQIFKACLRKS----P--V--SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 646 ----~i~~~~p~~~~r----~~Il~~~l~~~----~--~--~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a~~~~~~~ 709 (807)
.+.+..|...+| ..+++.++++. . + -++.-+..|....-.-+-++++++++.|+..+-...+..
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~ 374 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISD 374 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccCh
Confidence 233444555555 23445554321 1 1 123334455544422245899999998877543322222
Q ss_pred HHHHHhhhcCCccccccccccccccccHHHHHHHHhhcCCCCCHHH
Q 003623 710 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDAD 755 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f~~al~~~~~s~s~~~ 755 (807)
...... ......... ........+..+.+..||+....+.+...
T Consensus 375 ~~l~~~-~~~~~~~~~-~~~~~~~~~E~~~i~~al~~~~gn~~~aA 418 (444)
T PRK15115 375 ALVEQA-LEGENTALP-TFVEARNQFELNYLRKLLQITKGNVTHAA 418 (444)
T ss_pred hhhhhh-hcccccccc-cHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 110000 000000000 00001134566677888888888776654
No 459
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.04 E-value=0.00026 Score=72.41 Aligned_cols=174 Identities=21% Similarity=0.252 Sum_probs=108.2
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCc--------------
Q 003623 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAF-------------- 269 (807)
Q Consensus 205 ~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l-~~~-------------- 269 (807)
-+++.+.+..+....+..+..- ..-.|+++|||+|+||-|.+.++-+++ |.-
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 3445555556555555444321 112589999999999999998887775 211
Q ss_pred --------------EEEEechhhhhhhhchhH-HHHHHHHHHHHhcC---------CeEEEEccchhhcCCcCCCchhHH
Q 003623 270 --------------FFCINGPEIMSKLAGESE-SNLRKAFEEAEKNA---------PSIIFIDEIDSIAPKREKTHGEVE 325 (807)
Q Consensus 270 --------------~i~v~~~~l~~~~~g~~~-~~i~~if~~a~~~~---------p~il~iDEid~l~~~~~~~~~~~~ 325 (807)
.+.++.++ .|... --+..++++..+.+ .-+++|-|+|.+..
T Consensus 77 S~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~---------- 141 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR---------- 141 (351)
T ss_pred CCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----------
Confidence 11222222 12221 23445555443322 25889999887742
Q ss_pred HHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCC-CchhHHHHH
Q 003623 326 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIA 404 (807)
Q Consensus 326 ~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~-~~~~l~~la 404 (807)
.....|..-|+.+... +-+|..+|....+-+++++ |. ..+.++.|+.++-..++...+++-.+. ...-+..++
T Consensus 142 -dAQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa 215 (351)
T KOG2035|consen 142 -DAQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIA 215 (351)
T ss_pred -HHHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 3345667777776654 4455578888888899998 54 457889999999999998776554332 234467777
Q ss_pred HhhCCCch
Q 003623 405 KDTHGYVG 412 (807)
Q Consensus 405 ~~t~g~~~ 412 (807)
..+.|-..
T Consensus 216 ~kS~~nLR 223 (351)
T KOG2035|consen 216 EKSNRNLR 223 (351)
T ss_pred HHhcccHH
Confidence 77776443
No 460
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.04 E-value=1.8e-05 Score=90.90 Aligned_cols=168 Identities=24% Similarity=0.362 Sum_probs=94.2
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhc-----ccCCchH-------HHHHHHHHHHhCCCeEEE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGESEA-------NVREIFDKARQSAPCVLF 579 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~-----~vg~se~-------~i~~lf~~a~~~~p~ilf 579 (807)
...++++|++||||+++|+++...+ +.+|+.++|..+... .+|.... .....|..| ...+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEE
Confidence 3469999999999999999998765 468999999766321 1111000 000122222 235999
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCCCCCCccccCCCCCcc-----
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ----- 645 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~~----- 645 (807)
||||+.+.. .+...|+..++.-. . ..++.||+|||..- ..+.+.|+|..
T Consensus 243 ld~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 243 LDEIGEMPL--------------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYR 305 (457)
T ss_pred EechhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHH
Confidence 999999854 24566666665421 1 12478899998631 12222234432
Q ss_pred --eeecCCCCHHHHH----HHHHHHhccC----CC----CCcccHHHHHHHcccCChhhHHHHHHHHHHHH
Q 003623 646 --LIYIPLPDEESRL----QIFKACLRKS----PV----SKDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 646 --~i~~~~p~~~~r~----~Il~~~l~~~----~~----~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a 702 (807)
.+.+..|...+|. .++..++.+. .. -.+..+..|....---+-++++++++.|+..+
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 3445555555543 3444444322 11 11222334443331223489999999888655
No 461
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.03 E-value=9.4e-06 Score=90.50 Aligned_cols=151 Identities=27% Similarity=0.437 Sum_probs=94.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh-
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK- 281 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~- 281 (807)
...++.|.+..++++++.+..- ....-+|||+|++||||-++||+|-... +.+|+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567999999999998887641 1234579999999999999999997664 569999999654221
Q ss_pred ----hhchh----H---HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhc-----cc----c
Q 003623 282 ----LAGES----E---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK----S 341 (807)
Q Consensus 282 ----~~g~~----~---~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~-----~~----~ 341 (807)
..|.. . ..-.-.|+.|.. ..||+|||..+.. +++ ..|+..+.. +. -
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-------~~Q----~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-------ELQ----VKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-------HHH----HHHHHHHHcCeeEecCCCccc
Confidence 11110 0 011124445443 4899999987742 222 334444431 11 1
Q ss_pred CCeEEEEEecCCCCCCCHHHHccCCcc-------eEEEeCCCChhHHHHH
Q 003623 342 RAHVIVIGATNRPNSIDPALRRFGRFD-------REIDIGVPDEVGRLEV 384 (807)
Q Consensus 342 ~~~v~vI~atn~~~~ld~al~r~~Rf~-------~~i~i~~P~~~~R~~I 384 (807)
+..|-||++||.. +..... .|+|- ..+.+.+|...+|.+-
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~ED 320 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKED 320 (464)
T ss_pred ceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchh
Confidence 2468899999975 322222 13332 3456777887777653
No 462
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.03 E-value=1e-06 Score=102.21 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=31.8
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPE 277 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~ 277 (807)
+.+.++..+.|+||+|+|||||+++|++.+... -+.+++.+
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 67 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE 67 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 346788899999999999999999999987432 24455544
No 463
>PRK13409 putative ATPase RIL; Provisional
Probab=98.03 E-value=3.1e-05 Score=91.11 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 239 VKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 239 i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.++.-+.|.||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46677899999999999999999998764
No 464
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.03 E-value=1.2e-05 Score=92.46 Aligned_cols=170 Identities=23% Similarity=0.351 Sum_probs=100.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcc-----cCCch----HHH---HHHHHHHHhCCCeEEE
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE----ANV---REIFDKARQSAPCVLF 579 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~-----vg~se----~~i---~~lf~~a~~~~p~ilf 579 (807)
...+++.|.+||||+++|+++.... +.+|+.++|..+...+ .|... ... ...|. ......||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ 233 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFE---QADGGTLF 233 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEE---ECCCCeEE
Confidence 3469999999999999999998875 4689999987653211 12100 000 01122 22346899
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCC-------CCCCccccCCCCC
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL 643 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~-------~~ld~allrpgRf 643 (807)
||||+.|.. .+...|+..|+.-. + ..++-||+||+.. ..+.+.|.. |+
T Consensus 234 l~ei~~l~~--------------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl 297 (463)
T TIGR01818 234 LDEIGDMPL--------------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RL 297 (463)
T ss_pred EEchhhCCH--------------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--Hh
Confidence 999999754 23455666665321 0 1246788888763 133344443 44
Q ss_pred c-ceeecCCCC--HHHHHHHHHHHhccC----CC----CCcccHHHHHHHcccCCh--hhHHHHHHHHHHHHHHH
Q 003623 644 D-QLIYIPLPD--EESRLQIFKACLRKS----PV----SKDVDLRALAKYTQGFSG--ADITEICQRACKYAIRE 705 (807)
Q Consensus 644 ~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~----~~~~~~~~la~~~~g~sg--~di~~l~~~A~~~a~~~ 705 (807)
. ..|++|+.. .++...+++.+++.. .. -++.-+..|... +|.| ++|+++++.|+..+...
T Consensus 298 ~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~~~~ 370 (463)
T TIGR01818 298 NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMASGD 370 (463)
T ss_pred CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhCCCC
Confidence 4 467777765 455666666665432 11 122223444433 4654 89999999998876443
No 465
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=0.00014 Score=78.18 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=26.8
Q ss_pred hcCCCCcceeeeCCCCCcHHHHHHHHHHHhC
Q 003623 510 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 540 (807)
Q Consensus 510 ~~~~~~~giLL~GppGtGKT~la~alA~~~~ 540 (807)
+|+.....|.++||+|+||+||.+.+.+.+.
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCCC
Confidence 4667777799999999999999999988763
No 466
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=2.6e-05 Score=82.35 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCCeE--------EEEeccchhhcc-cCC----chHHHHHHHHHHH----hCCC
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANF--------ISVKGPELLTMW-FGE----SEANVREIFDKAR----QSAP 575 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~~~--------i~v~~~~l~~~~-vg~----se~~i~~lf~~a~----~~~p 575 (807)
+.+..+||+||.|+||+++|.++|..+-+.- -.-.-||+.--. .|. +-..+|.+-+.+. .+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 3456799999999999999999998763210 000112221000 111 2334555555543 3445
Q ss_pred eEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCC
Q 003623 576 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 576 ~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p 652 (807)
.|++||++|.+.. ...|.||+.|+. +..++++|..|+.++.|-|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt~--------------~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTL--------------DAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 7999999999743 357899999985 45677888888889999999987 887 6677755
No 467
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.01 E-value=1e-05 Score=87.41 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=58.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCC-CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEec----h
Q 003623 209 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----P 276 (807)
Q Consensus 209 di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLar~la~~l~~-------~~i~v~~----~ 276 (807)
++.|+++.+.++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999988877765422 122 24567999999999999999999999976 7788876 4
Q ss_pred hhhhhhhchhHHHHHHHHHHH
Q 003623 277 EIMSKLAGESESNLRKAFEEA 297 (807)
Q Consensus 277 ~l~~~~~g~~~~~i~~if~~a 297 (807)
.+.....+-.....+..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 444444444455666666444
No 468
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.00 E-value=2.7e-05 Score=75.38 Aligned_cols=72 Identities=31% Similarity=0.451 Sum_probs=46.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhhh----------------------h--chhHHHHHHHHHHH
Q 003623 245 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----------------------A--GESESNLRKAFEEA 297 (807)
Q Consensus 245 vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~~----------------------~--g~~~~~i~~if~~a 297 (807)
++|+||||+|||+++..++... +..++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998886 3455555543221100 0 00111122334555
Q ss_pred HhcCCeEEEEccchhhcCC
Q 003623 298 EKNAPSIIFIDEIDSIAPK 316 (807)
Q Consensus 298 ~~~~p~il~iDEid~l~~~ 316 (807)
....+.+++|||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988654
No 469
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00015 Score=78.28 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=86.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------EEEEechhhhhhhhchhHHHHHHHHHHHH
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAF-----------------------FFCINGPEIMSKLAGESESNLRKAFEEAE 298 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~-----------------------~i~v~~~~l~~~~~g~~~~~i~~if~~a~ 298 (807)
+..+||+||.|+||+++|+.+|+.+-+. ++.+.... .++. -.-..+|.+.+.+.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHHh
Confidence 4579999999999999999999876321 22222110 0010 12234555544332
Q ss_pred ----hcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeC
Q 003623 299 ----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 374 (807)
Q Consensus 299 ----~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~ 374 (807)
....-|++||++|.+. ....+.|++.++.- ..++++|..|+.++.+-|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 2334699999999884 23457788888864 3467788888889999999998 76 568899
Q ss_pred CCChhHHHHHHHH
Q 003623 375 VPDEVGRLEVLRI 387 (807)
Q Consensus 375 ~P~~~~R~~Il~~ 387 (807)
.|+.++..+.|..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888877754
No 470
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.99 E-value=8.9e-06 Score=77.19 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEechhhhhhhhchhHH
Q 003623 212 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEIMSKLAGESES 288 (807)
Q Consensus 212 G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~---~~i~v~~~~l~~~~~g~~~~ 288 (807)
|-+..++++++.+..-. ....+|+|+|++||||+++|++|....+. +++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a-----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA-----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH-----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHHh-----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 44556666666554311 23568999999999999999999887653 45555554432
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhc
Q 003623 289 NLRKAFEEAEKNAPSIIFIDEIDSIA 314 (807)
Q Consensus 289 ~i~~if~~a~~~~p~il~iDEid~l~ 314 (807)
...++.+ ....|||+|+|.+.
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-
T ss_pred --HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 55699999999884
No 471
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=6.6e-06 Score=85.28 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=26.8
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.++.++-+.|.||+|+|||||+|.||+..
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 456778899999999999999999999875
No 472
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.97 E-value=2.5e-05 Score=76.38 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=51.5
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechhhh--------hhhhc-----hhHHHHHHHHHHHHhcC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKNA 301 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~--------~~~~g-----~~~~~i~~if~~a~~~~ 301 (807)
+.+.++..+.|.||+|+|||||++.|++..... -+.+++.++. ....+ ...+.-+..+..+....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999886422 2344432221 11011 11234556677777889
Q ss_pred CeEEEEccchh
Q 003623 302 PSIIFIDEIDS 312 (807)
Q Consensus 302 p~il~iDEid~ 312 (807)
|.++++||-..
T Consensus 101 p~illlDEP~~ 111 (163)
T cd03216 101 ARLLILDEPTA 111 (163)
T ss_pred CCEEEEECCCc
Confidence 99999999643
No 473
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.97 E-value=1.7e-05 Score=80.19 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=26.7
Q ss_pred hhCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 236 SIGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 236 ~l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
++.++.+..++|.||+||||||+.+.|.+..
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 3457788889999999999999999997665
No 474
>PRK06851 hypothetical protein; Provisional
Probab=97.96 E-value=0.00025 Score=77.62 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.4
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEec
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 548 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~ 548 (807)
.+-++|.|+||||||+|++.++.++ |......-|
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3459999999999999999999876 444444444
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.96 E-value=1.7e-05 Score=85.75 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=26.4
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANET 266 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l 266 (807)
+.+.++..+.|.||+||||||++|+||+.-
T Consensus 26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456778889999999999999999999864
No 476
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.95 E-value=1.9e-05 Score=90.38 Aligned_cols=165 Identities=22% Similarity=0.300 Sum_probs=93.7
Q ss_pred CcceeeeCCCCCcHHHHHHHHHHHh---CCeEEEEeccchhhcccCCchHHHHHHHHH---------------HHhCCCe
Q 003623 515 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDK---------------ARQSAPC 576 (807)
Q Consensus 515 ~~giLL~GppGtGKT~la~alA~~~---~~~~i~v~~~~l~~~~vg~se~~i~~lf~~---------------a~~~~p~ 576 (807)
...++++|.+||||+++|+++...+ +.+|+.++|..+...++ -..+|.. .......
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4559999999999999999998765 46899999986532211 1112211 1122356
Q ss_pred EEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----C----CCcEEEeecCCCCCCCCccccCCCCCcc--
Q 003623 577 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ-- 645 (807)
Q Consensus 577 ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----~----~~~v~vi~aTn~~~~ld~allrpgRf~~-- 645 (807)
+||||||+.|... +...|+..++.-. . ..++-+|+||+.+- ...+.+|+|..
T Consensus 236 tl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l 298 (441)
T PRK10365 236 TLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDL 298 (441)
T ss_pred EEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHH
Confidence 8999999998542 4456666665421 0 12456787877632 12233455532
Q ss_pred -----eeecCCCCHHHH----HHHHHHHhccC----CC----CCcccHHHHHHHcccCChhhHHHHHHHHHHHH
Q 003623 646 -----LIYIPLPDEESR----LQIFKACLRKS----PV----SKDVDLRALAKYTQGFSGADITEICQRACKYA 702 (807)
Q Consensus 646 -----~i~~~~p~~~~r----~~Il~~~l~~~----~~----~~~~~~~~la~~~~g~sg~di~~l~~~A~~~a 702 (807)
.+.+..|...+| ..+++.++.+. .. -.+..+..|....-.-+-++++++++.|+..+
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 334444444444 44555555431 11 12223444444331123478888888877654
No 477
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=1.5e-05 Score=78.85 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=25.1
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANE 265 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~ 265 (807)
+.+.++.-+.|+||+|||||||+|+|...
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34678888999999999999999999653
No 478
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.00024 Score=77.75 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=121.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhC----C-cEEEEechhhh---
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----A-FFFCINGPEIM--- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~----~-~~i~v~~~~l~--- 279 (807)
..+.|-+.++..+++++..++ ....+..+.+.|-||+|||.+...+-..+. . ..+++||..+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 458899999999999987654 335677899999999999999886654432 2 34778886431
Q ss_pred ---hhhh---------chhHHHHHHHHHHHHhc--CCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeE
Q 003623 280 ---SKLA---------GESESNLRKAFEEAEKN--APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV 345 (807)
Q Consensus 280 ---~~~~---------g~~~~~i~~if~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v 345 (807)
.+.. +..+......|+.-..+ .+-++++||+|.++..... ++-.|..|-. ....++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~--------vLy~lFewp~--lp~sr~ 290 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT--------VLYTLFEWPK--LPNSRI 290 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc--------eeeeehhccc--CCccee
Confidence 1111 11222233344433222 3678999999999844321 2222222211 134578
Q ss_pred EEEEecCCCCCCCHHHHc----cCCcceEEEeCCCChhHHHHHHHHHhcCCCCCC--chhHHHHHHhhCCCch
Q 003623 346 IVIGATNRPNSIDPALRR----FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD--DVDLERIAKDTHGYVG 412 (807)
Q Consensus 346 ~vI~atn~~~~ld~al~r----~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~--~~~l~~la~~t~g~~~ 412 (807)
++||..|..+.-|..|-| .+--...+.|++.+.++-.+||+......+... +..++-.|+...+-+|
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 899999988766665544 234566789999999999999998877665443 3346777888877765
No 479
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.94 E-value=5.3e-05 Score=88.16 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=83.4
Q ss_pred cceeeeCCCCCcHHHHHHHHHHHhCC--eEEEEeccchhhcccCCc--hHHHH--------HHHHHHHhCCCeEEEEccc
Q 003623 516 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANVR--------EIFDKARQSAPCVLFFDEL 583 (807)
Q Consensus 516 ~giLL~GppGtGKT~la~alA~~~~~--~~i~v~~~~l~~~~vg~s--e~~i~--------~lf~~a~~~~p~ilfiDEi 583 (807)
.|++|.|+.||+||+++++++..+.. +|+.+-..--....+|.. +..++ -++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 57999999999999999999999754 776654332223334432 11111 11222222 59999999
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHHcCCC-----------CCCcEEEeecCCCC---CCCCccccCCCCCcceeec
Q 003623 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~-----------~~~~v~vi~aTn~~---~~ld~allrpgRf~~~i~~ 649 (807)
..+ ...+++.|+.-|+.-. -..++++|++-|.. ..|.++++- ||+.+|.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 775 3568999999997531 12467888874432 358889998 99999999
Q ss_pred CCCCHHH
Q 003623 650 PLPDEES 656 (807)
Q Consensus 650 ~~p~~~~ 656 (807)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 480
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00047 Score=73.23 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=83.3
Q ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHhCCeE----------------EEEeccchhhcc-cCC--chHHHHHHHHHHH--
Q 003623 513 SPSKGVLFYGPPGCGKTLLAKAIANECQANF----------------ISVKGPELLTMW-FGE--SEANVREIFDKAR-- 571 (807)
Q Consensus 513 ~~~~giLL~GppGtGKT~la~alA~~~~~~~----------------i~v~~~~l~~~~-vg~--se~~i~~lf~~a~-- 571 (807)
+.+..+||+|| .||+++|+.+|..+-+.- ..-+-+|+.--. .|. .-..+|.+-+.+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45567999996 689999999997652210 000112221100 011 1245666555543
Q ss_pred --hCCCeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCCCCCCccccCCCCCcceeec
Q 003623 572 --QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 572 --~~~p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~ 649 (807)
.+...|++||++|.+.. ...|.||+.|+. +..+.++|.+|+.++.|-|.+.+ |+. .|+|
T Consensus 100 p~~~~~kV~II~~ad~m~~--------------~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV--------------NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 23457999999999743 357899999985 45567888888889999999988 996 7888
Q ss_pred CCCCHHHHHHHHH
Q 003623 650 PLPDEESRLQIFK 662 (807)
Q Consensus 650 ~~p~~~~r~~Il~ 662 (807)
++ +.++..+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 66 5555555554
No 481
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.91 E-value=3.1e-05 Score=83.35 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=27.2
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+..+..+.|.||+||||||++|.||+...
T Consensus 24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999998753
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.90 E-value=3.8e-05 Score=75.89 Aligned_cols=75 Identities=21% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechhh--hhhhh-chhHHHHHHHHHHHHhcCCeEEEEccchh
Q 003623 238 GVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEIDS 312 (807)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l--~~~~~-g~~~~~i~~if~~a~~~~p~il~iDEid~ 312 (807)
.+.++..+.|.||+|+|||||++.|++.+... -+.+++..+ ..... -...++-+..+..+....|.++++||--.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 45788899999999999999999999976322 133333211 00100 11123445556667778899999999643
No 483
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.90 E-value=7.1e-05 Score=80.49 Aligned_cols=115 Identities=27% Similarity=0.367 Sum_probs=69.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhhhh----------------hhchhHHHHHHHHHHHH
Q 003623 238 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 298 (807)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~~~----------------~~g~~~~~i~~if~~a~ 298 (807)
|++++.-++|+||||||||+|+..++... +..+++++....... .....++.+..+.+..+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 57788899999999999999988775543 556666665332110 01112333444444455
Q ss_pred hcCCeEEEEccchhhcCCcCC------CchhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 299 KNAPSIIFIDEIDSIAPKREK------THGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 299 ~~~p~il~iDEid~l~~~~~~------~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
...+.++|||-+.++.+..+. .......|...+.+..+.......++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 677899999999998864221 111233455555555555554556666665543
No 484
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.89 E-value=0.00023 Score=90.75 Aligned_cols=174 Identities=23% Similarity=0.294 Sum_probs=96.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEech------
Q 003623 206 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---FCINGP------ 276 (807)
Q Consensus 206 ~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~---i~v~~~------ 276 (807)
.+++++|++..++++.+++.+ +....+.|.|+|++|+||||||+++++.+...| +.++..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 567899999999999888753 234567899999999999999999988765432 222210
Q ss_pred hhhhh-----h---hchhHHHHH-------------HHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHH
Q 003623 277 EIMSK-----L---AGESESNLR-------------KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL 335 (807)
Q Consensus 277 ~l~~~-----~---~g~~~~~i~-------------~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ 335 (807)
..... + .......+. ..++......+.+|++|+++.. .....+...
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~~~ 317 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALAGQ 317 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHHhh
Confidence 00000 0 000000011 1122333456789999997632 122333322
Q ss_pred hhccccCCeEEEEEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCCCCCch---hHHHHHHhhCCC
Q 003623 336 MDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV---DLERIAKDTHGY 410 (807)
Q Consensus 336 ld~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~l~~~~---~l~~la~~t~g~ 410 (807)
.+.... +. .||.||++. .+.+....++.+++..|+.++..+++..++-+.....+. -..+++..+.|.
T Consensus 318 ~~~~~~-Gs-rIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 318 TQWFGS-GS-RIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNL 388 (1153)
T ss_pred CccCCC-Cc-EEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 222222 22 233356543 233323456788999999999999988775433222211 123455556554
No 485
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.88 E-value=0.00044 Score=79.15 Aligned_cols=154 Identities=22% Similarity=0.320 Sum_probs=92.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEechhhhh----------hhhchh------HHHHHHHHHH
Q 003623 243 KGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPEIMS----------KLAGES------ESNLRKAFEE 296 (807)
Q Consensus 243 ~~vLL~GppGtGKTtLar~la~~l~----------~~~i~v~~~~l~~----------~~~g~~------~~~i~~if~~ 296 (807)
..+.+.|-||||||..++.+-..+. ..++.||+..+.+ .+.|+. -..+..-|.-
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3599999999999999999877552 3478888855432 222221 1122333332
Q ss_pred H-HhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcc-ccCCeEEEEEecCCCCCCCHHHH--ccCCcc-eEE
Q 003623 297 A-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KSRAHVIVIGATNRPNSIDPALR--RFGRFD-REI 371 (807)
Q Consensus 297 a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~-~~~~~v~vI~atn~~~~ld~al~--r~~Rf~-~~i 371 (807)
+ ....++|++|||+|.|+...+ .+ |.++++-. ....+++||+..|..+....-|- -..|++ .+|
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q--------dV---lYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi 571 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ--------DV---LYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRI 571 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH--------HH---HHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceee
Confidence 2 124578999999999986532 23 34444422 23457788887776643322221 011322 457
Q ss_pred EeCCCChhHHHHHHHHHhcCCCCCCchhHHHHHHhh
Q 003623 372 DIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDT 407 (807)
Q Consensus 372 ~i~~P~~~~R~~Il~~~~~~~~l~~~~~l~~la~~t 407 (807)
.|.+.+..+..+|+...+.......+.-++-+|+..
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkV 607 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGLDAFENKAIELVARKV 607 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHH
Confidence 889999999999998887766444333344444443
No 486
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.88 E-value=2.8e-05 Score=77.39 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=27.5
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
+.+.++..++|.||+|+|||||++.|++...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567889999999999999999999999763
No 487
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.88 E-value=5.1e-05 Score=68.55 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=51.2
Q ss_pred eeeeCCCCCcHHHHHHHHHHHhCCeEEEEeccchhhcccCCchHHHHHHHHHHHhCCCeEEEEcccchhhhhcCCCCCCC
Q 003623 518 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDA 597 (807)
Q Consensus 518 iLL~GppGtGKT~la~alA~~~~~~~i~v~~~~l~~~~vg~se~~i~~lf~~a~~~~p~ilfiDEid~l~~~r~~~~~~~ 597 (807)
|.|+||||+|||++|+.+|..+...+-.-....+ |... .-.+.| .-+... .++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v---y~~~---~~~~~w-~gY~~q-~vvi~DD~~~~~~~-------- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV---YTRN---PGDKFW-DGYQGQ-PVVIIDDFGQDNDG-------- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE---EeCC---Cccchh-hccCCC-cEEEEeecCccccc--------
Confidence 5799999999999999999876422200001111 1100 011122 222333 48899998774321
Q ss_pred CccHHHHHHHHHHHHcCCC---------C----CCcEEEeecCCC
Q 003623 598 GGAADRVLNQLLTEMDGMS---------A----KKTVFIIGATNR 629 (807)
Q Consensus 598 ~~~~~~v~~~lL~~ld~~~---------~----~~~v~vi~aTn~ 629 (807)
. ......+++..++... . -...+||+|||.
T Consensus 65 -~-~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 -Y-NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred -c-chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 1 2235666777666532 1 112678888884
No 488
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.87 E-value=7.4e-06 Score=86.76 Aligned_cols=136 Identities=26% Similarity=0.493 Sum_probs=74.4
Q ss_pred CCcceeeeCCCCCcHHHHHHHHHHHhCC-eE--EEEeccchhhcccCCchHHHHHHHHH-----------HHhCCCeEEE
Q 003623 514 PSKGVLFYGPPGCGKTLLAKAIANECQA-NF--ISVKGPELLTMWFGESEANVREIFDK-----------ARQSAPCVLF 579 (807)
Q Consensus 514 ~~~giLL~GppGtGKT~la~alA~~~~~-~~--i~v~~~~l~~~~vg~se~~i~~lf~~-----------a~~~~p~ilf 579 (807)
..+.+||+||+|||||++++.+-..+.. .+ ..+..+-.. +...+..+.+. +.....+|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 4567999999999999999887655432 22 233332211 11122211111 1123347999
Q ss_pred EcccchhhhhcCCCCCCCCccHHHHHHHHHHHH-c--CCCC--------CCcEEEeecCCCC---CCCCccccCCCCCcc
Q 003623 580 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEM-D--GMSA--------KKTVFIIGATNRP---DIIDPALLRPGRLDQ 645 (807)
Q Consensus 580 iDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~l-d--~~~~--------~~~v~vi~aTn~~---~~ld~allrpgRf~~ 645 (807)
+||+..-.... -+ ....+ +||.++ + |.-+ -.++.++||.|.+ ..|++.++| .|.
T Consensus 106 iDDlN~p~~d~-------yg-tq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~- 173 (272)
T PF12775_consen 106 IDDLNMPQPDK-------YG-TQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN- 173 (272)
T ss_dssp EETTT-S---T-------TS---HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-
T ss_pred ecccCCCCCCC-------CC-CcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-
Confidence 99998754431 11 11222 344333 2 2111 1357788888753 257888886 664
Q ss_pred eeecCCCCHHHHHHHHHHHhcc
Q 003623 646 LIYIPLPDEESRLQIFKACLRK 667 (807)
Q Consensus 646 ~i~~~~p~~~~r~~Il~~~l~~ 667 (807)
+++++.|+.++...|+..++..
T Consensus 174 i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 174 ILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EEE----TCCHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHHhh
Confidence 9999999999999999887754
No 489
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.87 E-value=0.00018 Score=74.13 Aligned_cols=127 Identities=24% Similarity=0.355 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEechhhhhhhhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCc
Q 003623 242 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 321 (807)
Q Consensus 242 ~~~vLL~GppGtGKTtLar~la~~l~~~~i~v~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~ 321 (807)
..+..++||+|||||..++.+|..+|..++..+|.+-++ ...+..+|.-+... .+.+++||++.+-.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~------ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE------ 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH------
Confidence 457789999999999999999999999999999977543 34566666655443 46899999997732
Q ss_pred hhHHHHHHHHHHHHhhccccC--------------CeEEEEEecCCC----CCCCHHHHccCCcceEEEeCCCChhHHHH
Q 003623 322 GEVERRIVSQLLTLMDGLKSR--------------AHVIVIGATNRP----NSIDPALRRFGRFDREIDIGVPDEVGRLE 383 (807)
Q Consensus 322 ~~~~~~v~~~Ll~~ld~~~~~--------------~~v~vI~atn~~----~~ld~al~r~~Rf~~~i~i~~P~~~~R~~ 383 (807)
++-.-+..++....+.+..+ ...-++.|.|+. ..+++.|+. +.+.+.+..||...-.+
T Consensus 99 -~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~I~e 174 (231)
T PF12774_consen 99 -EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSLIAE 174 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHHHHH
T ss_pred -HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHHHHH
Confidence 22222223333322222211 123344566633 467888874 55788888888776655
Q ss_pred HH
Q 003623 384 VL 385 (807)
Q Consensus 384 Il 385 (807)
++
T Consensus 175 i~ 176 (231)
T PF12774_consen 175 IL 176 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 490
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=3.5e-05 Score=79.32 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCCCCC
Q 003623 291 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 357 (807)
Q Consensus 291 ~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~~~l 357 (807)
|-++..|..+.|.++++||--. .++..-...+.+++..++.. ...|+..|++.+.+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh
Confidence 5567788889999999999422 22233345667777777776 66677788776544
No 491
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.86 E-value=0.00015 Score=68.55 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 003623 241 PPKGILLYGPPGSGKTLIARAVANETG 267 (807)
Q Consensus 241 ~~~~vLL~GppGtGKTtLar~la~~l~ 267 (807)
....|++.|+||+||||++.-++..+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356799999999999999999998774
No 492
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.86 E-value=3.4e-05 Score=84.76 Aligned_cols=141 Identities=23% Similarity=0.395 Sum_probs=80.8
Q ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHhCC-eEEEEeccchhh-------cccCCchHHHHHHHHHHHhCCCeEEEEccc
Q 003623 512 MSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLT-------MWFGESEANVREIFDKARQSAPCVLFFDEL 583 (807)
Q Consensus 512 ~~~~~giLL~GppGtGKT~la~alA~~~~~-~~i~v~~~~l~~-------~~vg~se~~i~~lf~~a~~~~p~ilfiDEi 583 (807)
..+++|+.|||++|+|||+|+-++-..+.. .-.++--.+++. .+.|.. ..+..+-+...+ ...+|.|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 357899999999999999999999887643 111121112211 111111 112222222222 2249999998
Q ss_pred chhhhhcCCCCCCCCccHHHHHHHHHHHHcCCCCCCcEEEeecCCCC-CCCCccccCCCCCcceeecCCCCHHHHHHHHH
Q 003623 584 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLPDEESRLQIFK 662 (807)
Q Consensus 584 d~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~~~~~~~v~vi~aTn~~-~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 662 (807)
.-- + -....++..|+..|= ..++++|+|+|++ +.|=+ +.+.+..+.|- ..+++
T Consensus 137 ~V~---------D--iaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Flp~------I~~l~ 190 (362)
T PF03969_consen 137 QVT---------D--IADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFLPF------IDLLK 190 (362)
T ss_pred ecc---------c--hhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHHHH------HHHHH
Confidence 762 1 122345666666654 3578999999983 33322 33333333332 46677
Q ss_pred HHhccCCCCCcccHHHHH
Q 003623 663 ACLRKSPVSKDVDLRALA 680 (807)
Q Consensus 663 ~~l~~~~~~~~~~~~~la 680 (807)
..+.-..+....|.....
T Consensus 191 ~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRRG 208 (362)
T ss_pred hceEEEEecCCCchhhhc
Confidence 777777777777776544
No 493
>PF05729 NACHT: NACHT domain
Probab=97.85 E-value=7.3e-05 Score=72.69 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=74.3
Q ss_pred ceeeeCCCCCcHHHHHHHHHHHhCC--------e-EEEEeccchhh------------cccCCchHHHHHHH-HHHHhCC
Q 003623 517 GVLFYGPPGCGKTLLAKAIANECQA--------N-FISVKGPELLT------------MWFGESEANVREIF-DKARQSA 574 (807)
Q Consensus 517 giLL~GppGtGKT~la~alA~~~~~--------~-~i~v~~~~l~~------------~~vg~se~~i~~lf-~~a~~~~ 574 (807)
-++|+|+||+|||++++.++..+.. . .+.+...+... .........+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999977521 1 12223222211 00111111222212 2334456
Q ss_pred CeEEEEcccchhhhhcCCCCCCCCccHHHHHHHHHHHHcC-CCCCCcEEEeecCCCCCCCCccccCCCCCcceeecCCCC
Q 003623 575 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPD 653 (807)
Q Consensus 575 p~ilfiDEid~l~~~r~~~~~~~~~~~~~v~~~lL~~ld~-~~~~~~v~vi~aTn~~~~ld~allrpgRf~~~i~~~~p~ 653 (807)
..+++||-+|.+...... ....+....+...+.. ....-+++|.+.+.....+...+-. . ..+.+++.+
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~ 151 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFS 151 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCC
Confidence 679999999998763211 0112222223233332 2233344443333222222222221 1 578999999
Q ss_pred HHHHHHHHHHHhcc
Q 003623 654 EESRLQIFKACLRK 667 (807)
Q Consensus 654 ~~~r~~Il~~~l~~ 667 (807)
.+++.++++.+++.
T Consensus 152 ~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 152 EEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988754
No 494
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=97.85 E-value=0.0003 Score=68.56 Aligned_cols=143 Identities=22% Similarity=0.327 Sum_probs=92.9
Q ss_pred CCcEEEECHHHHHhcC---CCCCCEEEEeeC-CCceEEEEEEcCCCCCCCeEEEcHHHHhhcccCCCCeEEEEEccCCCC
Q 003623 40 DNSVVVLHPDTMEKLQ---FFRGDTILIKGK-KRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKY 115 (807)
Q Consensus 40 ~~~~v~l~~~~~~~l~---~~~g~~v~i~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~v~~~~~~~~ 115 (807)
..++|.|.|++|.+|. +.-.=.-+|++. ..+.+.|-|.- -.-++|.|.|+.-+.+++++..|+.|.|+. ..+|.
T Consensus 24 ~gdKiiLP~s~L~~L~~~~~~~P~~F~i~n~~~~~~th~GVlE-FsA~eG~i~lP~wmm~~L~l~~g~~V~v~~-~~LPk 101 (176)
T PF03152_consen 24 YGDKIILPPSALDELSRLNIPYPMLFEISNPDNGKRTHCGVLE-FSAEEGTIYLPPWMMQNLGLQEGDIVRVEY-VSLPK 101 (176)
T ss_dssp CTTEEEE-HHHHHHHHHTT--SS-EEEEEETTTTEEEEEEEEE-E--CTTEEEE-CHHHHHHT--TTEEEEEEE-EE---
T ss_pred CCCeEEcCHHHHHHHHhccCCCCEEEEEecCCCCcEEEEEEEE-eEcCCCeEEeCccHHhhcCCCCCCEEEEEE-eECCC
Confidence 4568999999999886 322235666665 34446665552 223569999999999999999999999996 57899
Q ss_pred CcEEEeccccccccCcchhhHHHHhHHHhhhcCcccccCcEEEEeecceeEEEEEEEecCCcc-EEeCCCcEE
Q 003623 116 GKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEY-CVVAPDTEI 187 (807)
Q Consensus 116 a~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~p~~~-~~~~~~t~i 187 (807)
++.|.+.|.+.....+ ..+.+.|..++. .+..+..|++|.+..++..+.|.|++++|.+. +++..+-++
T Consensus 102 gt~vkLqP~~~~F~~i--~n~KavLE~~Lr-~ystLT~Gd~I~i~~~~~~y~l~V~e~kP~~aV~IidTDl~v 171 (176)
T PF03152_consen 102 GTFVKLQPQSSDFLDI--SNPKAVLERALR-NYSTLTKGDTISIEYNNKTYELDVVEVKPENAVSIIDTDLEV 171 (176)
T ss_dssp -SEEEEEESCHHHHCS--S-HHHHHHHHHC-C-SEEETTSEEEEECTTEEEEEEEEEECSSSCEE-SSS-SEE
T ss_pred CCEEEEeECCCccccc--cchHHHHHhhcc-cCceeecCCEEEEEeCCEEEEEEEEEEcCCCEEEEEeCceEE
Confidence 9999999976432122 234556666663 45679999999998888888999999999873 444333333
No 495
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.84 E-value=0.00039 Score=74.48 Aligned_cols=167 Identities=16% Similarity=0.234 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHH--hCCcE---EEEechh------h----
Q 003623 214 RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE--TGAFF---FCINGPE------I---- 278 (807)
Q Consensus 214 ~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~--l~~~~---i~v~~~~------l---- 278 (807)
+.++++|.+.+.... .....|.|+|++|+|||+||+.++.. ....| ++++... +
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 355666666554311 44677999999999999999999877 44332 3343321 1
Q ss_pred hhhhh--------chhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEe
Q 003623 279 MSKLA--------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 350 (807)
Q Consensus 279 ~~~~~--------g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~a 350 (807)
..... ......+...+.......++++++|+++... ....+...+..... +..||.|
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~--~~kilvT 135 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSS--GSKILVT 135 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCHHS--S-EEEEE
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc-------------cccccccccccccc--ccccccc
Confidence 11110 1112234444455555669999999987442 11222222222222 2334446
Q ss_pred cCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHhcCCC----CCCchhHHHHHHhhCCC
Q 003623 351 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGY 410 (807)
Q Consensus 351 tn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~~~~~----l~~~~~l~~la~~t~g~ 410 (807)
|.... +-..+. .-...++++..+.++-.+++........ .........++..+.|.
T Consensus 136 TR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 136 TRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp ESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccc-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 65432 221121 1256789999999999999987764433 11123356788888764
No 496
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.84 E-value=1.4e-05 Score=63.85 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=32.7
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003623 732 VAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQ 767 (807)
Q Consensus 732 ~~~v~~~~f~~al~~~~~s~s~~~~~~y~~~~~~~~ 767 (807)
.++|+++||+.||+.++||||+++|++|++|.++|+
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 347999999999999999999999999999999984
No 497
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.83 E-value=0.00013 Score=78.54 Aligned_cols=115 Identities=26% Similarity=0.345 Sum_probs=67.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEechhhhh-----h-----------hhchhHHHHHHHHHHHH
Q 003623 238 GVKPPKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIMS-----K-----------LAGESESNLRKAFEEAE 298 (807)
Q Consensus 238 ~i~~~~~vLL~GppGtGKTtLar~la~~---l~~~~i~v~~~~l~~-----~-----------~~g~~~~~i~~if~~a~ 298 (807)
|++.+.-+.|+||||||||+|+..++.. .+...++++...-.. . .....++.+..+-....
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5777888999999999999999987654 356677776532111 0 00112233333333445
Q ss_pred hcCCeEEEEccchhhcCCcCCC--c----hhHHHHHHHHHHHHhhccccCCeEEEEEecC
Q 003623 299 KNAPSIIFIDEIDSIAPKREKT--H----GEVERRIVSQLLTLMDGLKSRAHVIVIGATN 352 (807)
Q Consensus 299 ~~~p~il~iDEid~l~~~~~~~--~----~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn 352 (807)
+..+.++|||-+.++.+..+.. . .....+.+.+.+..+.......++.+|.+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6778999999999998642211 1 1123344445454444444455666665543
No 498
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.9e-05 Score=88.40 Aligned_cols=129 Identities=23% Similarity=0.320 Sum_probs=87.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEechhhh-----
Q 003623 208 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----- 279 (807)
Q Consensus 208 ~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l---~~~~i~v~~~~l~----- 279 (807)
..|.|+++.+..|-++|..+... +.+. .+.-.++|.||.|+|||-||+++|..+ ...++.++.+++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g--l~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG--LKDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc--cCCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 45899999999998888754211 0000 356679999999999999999999987 3457888877532
Q ss_pred -hh---hhchhHHHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhcccc---------CCeEE
Q 003623 280 -SK---LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------RAHVI 346 (807)
Q Consensus 280 -~~---~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~---------~~~v~ 346 (807)
+. |.|. .....+.+..+....+|++|||||..- ..+...|+.++|.-+- ..+++
T Consensus 637 igsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 637 IGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred cCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 21 2332 223455555666666999999998642 2355666677764321 24788
Q ss_pred EEEecCCC
Q 003623 347 VIGATNRP 354 (807)
Q Consensus 347 vI~atn~~ 354 (807)
||.|+|.-
T Consensus 704 ~IMTsn~~ 711 (898)
T KOG1051|consen 704 FIMTSNVG 711 (898)
T ss_pred EEEecccc
Confidence 99888864
No 499
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.83 E-value=5.7e-05 Score=78.73 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=95.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE------EEEe
Q 003623 201 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------FCIN 274 (807)
Q Consensus 201 ~~~~~~~~di~G~~~~~~~l~~~i~~~l~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~~------i~v~ 274 (807)
+..+-.+.++.+.++....+.++...+ .-.+.|+|||||+|||+...+.|..+-.+. ..++
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 445556788899999888888885442 223899999999999999999998876531 1222
Q ss_pred chhhhhhhhchhHHHHHHHHHHHHh-------cCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEE
Q 003623 275 GPEIMSKLAGESESNLRKAFEEAEK-------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 347 (807)
Q Consensus 275 ~~~l~~~~~g~~~~~i~~if~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~v 347 (807)
.++-.+ . .....--..|+.... ..+..+++||.|++..+ ..++|...++.+..+.++.
T Consensus 101 aSd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-----------AQnALRRviek~t~n~rF~- 165 (360)
T KOG0990|consen 101 ASDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-----------AQNALRRVIEKYTANTRFA- 165 (360)
T ss_pred ccCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-----------HHHHHHHHHHHhccceEEE-
Confidence 221110 0 111222234444442 25678999999987533 2344555555555544444
Q ss_pred EEecCCCCCCCHHHHccCCcceEEEeCCCChhHHHHHHHHHh
Q 003623 348 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 389 (807)
Q Consensus 348 I~atn~~~~ld~al~r~~Rf~~~i~i~~P~~~~R~~Il~~~~ 389 (807)
..+|.+..+.|++++ |+.+ +.+.+.+...-...+..+.
T Consensus 166 -ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 166 -TISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred -EeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHH
Confidence 568999999999987 5533 2344444444444444444
No 500
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=5e-05 Score=78.30 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=70.2
Q ss_pred hCCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEechhhhh-------------------------hhhch--hH
Q 003623 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------KLAGE--SE 287 (807)
Q Consensus 237 l~i~~~~~vLL~GppGtGKTtLar~la~~l~~~--~i~v~~~~l~~-------------------------~~~g~--~~ 287 (807)
+.+..++.+.|+|.+||||||++|.|.+..... -+..++.++.. +|..+ ..
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 346788999999999999999999999887533 13444433211 11111 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEccchhhcCCcCCCchhHHHHHHHHHHHHhhccccCCeEEEEEecCCC
Q 003623 288 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 354 (807)
Q Consensus 288 ~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~v~vI~atn~~ 354 (807)
++-|-.+..|..-.|.+++.||.-+.+ +..+..|+++++..++...++..+-.+++.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 233445667777889999999976553 234557777777777666555555555543
Done!