Query 003623
Match_columns 807
No_of_seqs 539 out of 5179
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 18:45:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003623.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1671-1674//hhsearch_pdb/003623hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 1143.7 51.7 793 14-807 9-806 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 933.2 38.5 795 11-807 6-806 (806)
3 3hu3_A Transitional endoplasmi 1.0 1 1 534.3 45.0 478 12-489 7-485 (489)
4 4b4t_J 26S protease regulatory 1.0 1 1 446.0 21.6 276 462-762 129-404 (405)
5 4b4t_I 26S protease regulatory 1.0 1 1 429.6 20.1 263 469-756 170-432 (437)
6 4b4t_L 26S protease subunit RP 1.0 1 1 428.0 24.0 273 464-761 164-436 (437)
7 4b4t_H 26S protease regulatory 1.0 1 1 424.4 22.4 266 472-762 200-466 (467)
8 4b4t_M 26S protease regulatory 1.0 1 1 423.9 24.5 264 465-753 165-428 (434)
9 4b4t_K 26S protease regulatory 1.0 1 1 420.3 20.2 264 471-759 162-427 (428)
10 3cf2_A TER ATPase, transitiona 1.0 1 1 382.1 20.8 285 474-769 197-492 (806)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=1143.67 Aligned_cols=793 Identities=78% Similarity=1.251 Sum_probs=729.8
Q ss_pred CCCCCHHHHHHCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEECHHH
Q ss_conf 88610588620489973898024689982999799879752999999799960797518999983899999929976977
Q 003623 14 KRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVV 93 (807)
Q Consensus 14 ~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~l~~~~~~~l~l~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 93 (807)
+.+++|||+++++.||+|+|+++.++++++|+|+|++|++||+.+||+|+|+|++++.+++|++++++++.+.|+|++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~ 88 (806)
T 3cf2_A 9 GDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVV 88 (806)
T ss_dssp ------------CCTTEEECBCCSSCCTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHH
T ss_pred CCCCHHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECHHH
T ss_conf 88701666633689844897367788789899789999876999999899980797559999848888889979968999
Q ss_pred HHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEEEE
Q ss_conf 85156678986999972578887479951455645685423599986897651485422596999931552699999996
Q 003623 94 RSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIET 173 (807)
Q Consensus 94 r~~~~~~~g~~v~v~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~ 173 (807)
|.|+|+++||.|+|+++..++.+++|++.|...+........+..+++.||....+||..|+.|.+...+..+.|+|+++
T Consensus 89 r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~ 168 (806)
T 3cf2_A 89 RNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVET 168 (806)
T ss_dssp HHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEE
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEE
T ss_conf 97669999798999989998867789993464002103345799999999875687246799899943885798999998
Q ss_pred CCCCCEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 6996078689947985388764323-356788775555681999999999987424693567640998991499986899
Q 003623 174 DPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPG 252 (807)
Q Consensus 174 ~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~~~~~~~iLL~GppG 252 (807)
+|.++++++++|.|.+.+.+..... ....+.++|+||+|++++++.|++++.+|+++|++|..+|+.+|+|||||||||
T Consensus 169 ~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPG 248 (806)
T 3cf2_A 169 DPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 248 (806)
T ss_dssp SSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTT
T ss_pred ECCCCEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
T ss_conf 57987698898379992666676653345899990351499999999999999875198988635899997589779899
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 90999999999982991799903146663110159999999999995399099972101105876777036899899999
Q 003623 253 SGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 332 (807)
Q Consensus 253 tGKTtLar~ia~~l~~~~i~i~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~~L 332 (807)
||||++|+++|++++.+++.++++++.+++.|+++..++.+|+.|....||||||||+|.++++++...++..++++.+|
T Consensus 249 TGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~L 328 (806)
T 3cf2_A 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQL 328 (806)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98899999999971983999973795433316789999999999997299299985100233445778873999999999
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99863113687099998359999988887703886439993799936799999998528877992338899986079934
Q 003623 333 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVG 412 (807)
Q Consensus 333 l~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~~~ 412 (807)
+.+|+++..+.+|+||++||+++.+|++++|+|||+++|+++.|+..+|.+||+.+++++.+..++++..+|..|+||++
T Consensus 329 L~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 329 LTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp HTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred HHHHHCCCCCCCEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCH
T ss_conf 99974666669879999669803269888578636168866897989999999998568998864389999975689989
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
Q ss_conf 45999999999998996233355432013577630122433678642026898875210101488652222221345656
Q 003623 413 ADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENVKRE 492 (807)
Q Consensus 413 ~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~p~~~~~~i~g~~~~k~~ 492 (807)
+||..+|++|++.++++..+.+...+.....+......++.+||..|+..+.|+.+++...+.|++.|++++|++++|+.
T Consensus 409 aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHH
T ss_conf 99999999999999984145120001332045522556519999999972878311234445788788881788999999
Q ss_pred HHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 13100366788356642068998622656799981789999999880780899856200100238726779999999871
Q 003623 493 LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ 572 (807)
Q Consensus 493 l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~~~l~~~~vg~se~~i~~if~~a~~ 572 (807)
|.+.+.||+++++.|.+++..+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|+.
T Consensus 489 l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 489 LQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp HTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999756668999971488888607986687789639999999983896687424112103343689999999999997
Q ss_pred CCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89949998141023210399889998507999999999970888998389960489989998234699988631321799
Q 003623 573 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652 (807)
Q Consensus 573 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn~~~~ld~allr~gRf~~~i~~~~p 652 (807)
..||||||||||++++.|+...++.++..+|++++||++|||+....+|+||||||+|+.||||++|||||++.|||++|
T Consensus 569 ~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 569 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred CCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCC
T ss_conf 29963520425677631588888986699999999999974878779989999379804389847177855079997996
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999999723599997114899998731487264999999999999999989878998620599644643552222
Q 003623 653 DEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVEDEV 732 (807)
Q Consensus 653 ~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (807)
|.++|.+||+.++++.++..++++..+|+.|+||||+||.++|++|++.|+++.++...............+.....+..
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------C
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999856799987789999997689999999999999999999999998564443330157410012334566
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 211388899999642799999999999999999810138998766899999----999999998778899999998899
Q 003623 733 AEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAP----PGADGGSDPFASSAGGADDDDLYS 807 (807)
Q Consensus 733 ~~i~~~~~~~al~~~~~s~s~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 807 (807)
+.|+++||+.|++.++||+|++++++|++|.++|+++|+||+ |.||.+.. |....|.+...+.++.++++|||.
T Consensus 729 ~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (806)
T 3cf2_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG 806 (806)
T ss_dssp CC----CCTTTC---------------CCCC------------------------------------------------
T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 864799999999867999999999999999999725367665-206887767778777888765445567787666659
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=933.17 Aligned_cols=795 Identities=78% Similarity=1.252 Sum_probs=714.0
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEEC
Q ss_conf 57888610588620489973898024689982999799879752999999799960797518999983899999929976
Q 003623 11 KGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMN 90 (807)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~l~~~~~~~l~l~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (807)
...+.+++|||+++++.|++|+|+++.+++.++|||+|++|++||+.+||+|.|+|++++.+++.+|++.+++.+.|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (806)
T 1ypw_A 6 DSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMN 85 (806)
T ss_dssp -----------CCCCCCTTEEEEECCSSCCSSCEEECHHHHHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECC
T ss_pred CCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCEEEEC
T ss_conf 34566410467742578845897267677688798889999975999998899936865737999964788899869964
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEE
Q ss_conf 97785156678986999972578887479951455645685423599986897651485422596999931552699999
Q 003623 91 KVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKV 170 (807)
Q Consensus 91 ~~~r~~~~~~~g~~v~v~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v 170 (807)
+.+|.|+|+++||.|+|+++.+++++++|++.|...++.++.+.+++.+++++|....+|+.+|+++.+..++..+.|+|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 165 (806)
T 1ypw_A 86 RVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV 165 (806)
T ss_dssp HHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEE
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCEEEEE
T ss_conf 89996639888998999988778757689980786522211550678999998600783226898799547876057788
Q ss_pred EEECCCCCEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEEC
Q ss_conf 9966996078689947985388764323-356788775555681999999999987424693567640998991499986
Q 003623 171 IETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG 249 (807)
Q Consensus 171 ~~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~~~~~~~iLL~G 249 (807)
++++|.++++++++|.+.+...+..+.. ......++|++|+|++++++.|++++.+|+.+|++|.++++.++.++||+|
T Consensus 166 ~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~G 245 (806)
T 1ypw_A 166 VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYG 245 (806)
T ss_dssp EEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECS
T ss_pred EECCCCCCCEECCCEEEEECCCCCCCHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEEC
T ss_conf 73368887332688699855865541122113578998882880999999999999874298999863889997389989
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHH
Q ss_conf 89990999999999982991799903146663110159999999999995399099972101105876777036899899
Q 003623 250 PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 329 (807)
Q Consensus 250 ppGtGKTtLar~ia~~l~~~~i~i~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~ 329 (807)
|||||||++++++++.++..++.+++.++.+.+.++.+..++.+|+.+..+.|+++|+||+|.++++++...++...++.
T Consensus 246 p~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 325 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIV 325 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCHHHHHHH
T ss_conf 39998799999999971996899975576544101589999999999986499579830077751114666316889999
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999863113687099998359999988887703886439993799936799999998528877992338899986079
Q 003623 330 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 409 (807)
Q Consensus 330 ~~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g 409 (807)
.+|++++++...+..+++|++||+++.+|+++++++||+..+.++.|+.++|.+|++.+++++.+..+.++..++..++|
T Consensus 326 ~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g 405 (806)
T 1ypw_A 326 SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 405 (806)
T ss_dssp HHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSS
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 99999865411466178760239810049998646554443556999999999999998733877622006777776147
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHH
Q ss_conf 93445999999999998996233355432013577630122433678642026898875210101488652222221345
Q 003623 410 YVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENV 489 (807)
Q Consensus 410 ~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~p~~~~~~i~g~~~~ 489 (807)
|+++++..++.++.+.++++...........+..+......++..++..++....|+..++...+.+.+.|++++|++.+
T Consensus 406 ~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~v 485 (806)
T 1ypw_A 406 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 53689999999999998764201011554201012444555556653111123571444200025754211112443022
Q ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCHHHHHHHHHH
Q ss_conf 65613100366788356642068998622656799981789999999880780899856200100238726779999999
Q 003623 490 KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDK 569 (807)
Q Consensus 490 k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~~~l~~~~vg~se~~i~~if~~ 569 (807)
|+.+.+.+.++..+++.+..+++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.
T Consensus 486 k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHH
T ss_conf 22189999755536398975488877536897799987899999999984898799861676553057547889999999
Q ss_pred HHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 87189949998141023210399889998507999999999970888998389960489989998234699988631321
Q 003623 570 ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI 649 (807)
Q Consensus 570 a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn~~~~ld~allr~gRf~~~i~~ 649 (807)
++...|||+||||||++...|+...++..+...+++++||++|++.....+++||+|||+|+.||++++|||||+..|+|
T Consensus 566 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~ 645 (806)
T 1ypw_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCC
T ss_pred HHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 87069859999874454211268777764168999999999875456668769998438712279878376556730555
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999999999999723599997114899998731487264999999999999999989878998620599644643552
Q 003623 650 PLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMEEDVE 729 (807)
Q Consensus 650 ~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (807)
++|+.++|.+||+.++++.++..++++..+++.+.||||++|.++|++|++.|+++.++..+............+.....
T Consensus 646 ~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (806)
T 1ypw_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEED 725 (806)
T ss_dssp CCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----------------------
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99799999999999864599975227999997350059999999999999999999999877665430146431233434
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC
Q ss_conf 222211388899999642799999999999999999810138998766899999999999998778899-----999998
Q 003623 730 DEVAEIKAVHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAAPPGADGGSDPFASSAG-----GADDDD 804 (807)
Q Consensus 730 ~~~~~i~~~~~~~al~~~~~s~s~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 804 (807)
.....|+.+||+.|++.++||++.++++.|++|.++|+++++||+ |.++... .+.++++.+...++| ..+++|
T Consensus 726 ~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (806)
T 1ypw_A 726 DPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFPSGN-QGGAGPSQGSGGGTGGSVYTEDNDDD 803 (806)
T ss_dssp -CCTTTTTTSSCCCCCC---------------------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC-EECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 666760799999999867899999999999999999976325776-1068766-65677889999988887777664212
Q ss_pred CCC
Q ss_conf 899
Q 003623 805 LYS 807 (807)
Q Consensus 805 ~~~ 807 (807)
||+
T Consensus 804 ~~~ 806 (806)
T 1ypw_A 804 LYG 806 (806)
T ss_dssp ---
T ss_pred HCC
T ss_conf 019
No 3
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=1.00 E-value=1 Score=534.29 Aligned_cols=478 Identities=78% Similarity=1.255 Sum_probs=438.9
Q ss_pred CCCCCCCHHHHHHCCCCCEEEEECCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCEEEECH
Q ss_conf 78886105886204899738980246899829997998797529999997999607975189999838999999299769
Q 003623 12 GTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNK 91 (807)
Q Consensus 12 ~~~~~~~~~~~~~~~~p~~~~v~~~~~~g~~~v~l~~~~~~~l~l~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (807)
-.+.+++|||+++++.||+|+|+++.+++.++|||+|++|.+|++.+||+|.|+|++++.+++|+|+..+++++.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 86 (489)
T 3hu3_A 7 SKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNR 86 (489)
T ss_dssp ----------CCCCCCTTEEEEECCTTCCTTEEEECHHHHHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCH
T ss_pred CCCCCCCHHHHHCCCCCCEEEECCCCCCCCCEEEECHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCEEEECH
T ss_conf 12565111445425688725975677776878998999999769999998999268667379999507878999799568
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEEEEEE
Q ss_conf 77851566789869999725788874799514556456854235999868976514854225969999315526999999
Q 003623 92 VVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVI 171 (807)
Q Consensus 92 ~~r~~~~~~~g~~v~v~~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~ 171 (807)
.+|.|+|+++||.|+|+++..++.+++|++.|+...+.......++.+.+++.....+++..|+.+.+.+.++.+.|+++
T Consensus 87 ~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (489)
T 3hu3_A 87 VVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVV 166 (489)
T ss_dssp HHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEE
T ss_conf 99965398899989999888887467899837986523245305788867877405842036888996578846879998
Q ss_pred EECCCCCEEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECC
Q ss_conf 966996078689947985388764323-3567887755556819999999999874246935676409989914999868
Q 003623 172 ETDPPEYCVVAPDTEIFCEGEPVRRED-ENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGP 250 (807)
Q Consensus 172 ~~~p~~~~~~~~~t~i~~~~~~~~~~~-~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~~~~~~~iLL~Gp 250 (807)
..+|...+.++++|.+.+.+.+..+.. ......++|++++|++++++.|++++..++.+|++|..++..++.++||+||
T Consensus 167 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~Gp 246 (489)
T 3hu3_A 167 ETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246 (489)
T ss_dssp EEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECS
T ss_pred EECCCCCEEECCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECC
T ss_conf 41378866976881899736765544433345789988808979999999999998855989998649999975899996
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99909999999999829917999031466631101599999999999953990999721011058767770368998999
Q 003623 251 PGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 330 (807)
Q Consensus 251 pGtGKTtLar~ia~~l~~~~i~i~~~~l~~~~~g~~~~~i~~if~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~v~~ 330 (807)
||||||++|++++..++.+++.++|+++.+.+.|+.+..++.+|+.+....|++|||||+|.+.++++...++...++..
T Consensus 247 pGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~ 326 (489)
T 3hu3_A 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVS 326 (489)
T ss_dssp TTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99899999999999869988999745765442132678999999999963990899646555234554454257899999
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99998631136870999983599999888877038864399937999367999999985288779923388999860799
Q 003623 331 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 410 (807)
Q Consensus 331 ~Ll~~ld~~~~~~~v~vI~atn~~~~ld~al~r~~rf~~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~~~l~~la~~t~g~ 410 (807)
+|+..+++......++||++||+++.+++++++++||+..++++.|+.++|.+||+.+++.+.+..+.++..++..+.||
T Consensus 327 ~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~ 406 (489)
T 3hu3_A 327 QLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGH 406 (489)
T ss_dssp HHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTC
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 99987531246786699985488322698782777674699827979999999999998418986213399999975697
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHH
Q ss_conf 3445999999999998996233355432013577630122433678642026898875210101488652222221345
Q 003623 411 VGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNVNWEDIGGLENV 489 (807)
Q Consensus 411 ~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~d~~~al~~~~ps~~~~~~~~~p~~~~~~i~g~~~~ 489 (807)
+++|+..+|++|.+.++++....+..+...+..+......++.+||..|++.++|+.+++..++.|+++|+||||..+-
T Consensus 407 s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 407 VGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCCCCCC
T ss_conf 6999999999999999973023355320125523304676789999999976774241013431799889771897655
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=445.97 Aligned_cols=276 Identities=38% Similarity=0.686 Sum_probs=252.2
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 68988752101014886522222213456561310036678835664206899862265679998178999999988078
Q 003623 462 TSNPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA 541 (807)
Q Consensus 462 ~~~ps~~~~~~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~ 541 (807)
...|...+....+.|+++|+||+|++++|+.|++.+.||+++|+.|.++|+.+++|+|||||||||||++|+|+|++++.
T Consensus 129 ~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 129 KADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 65846661355579999888828889999999999999874999998679998882588589999878999999985188
Q ss_pred EEEEEECCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 08998562001002387267799999998718994999814102321039988999850799999999997088899838
Q 003623 542 NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 621 (807)
Q Consensus 542 ~~i~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 621 (807)
+|+.++++++.++|+|++++.++.+|..|+..+||||||||||++++.|+...+.......+++++||++|||+....+|
T Consensus 209 ~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 209 KFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred CCEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 85288868951133546899999999999870994676533411115778889997689999999999960433888875
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99604899899982346999886313217999999999999972359999711489999873148726499999999999
Q 003623 622 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKY 701 (807)
Q Consensus 622 ~viatTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~ 701 (807)
+||||||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 78812698144899672877676699769969999999999985599999657999999877999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999989878998620599644643552222211388899999642799999999999999
Q 003623 702 AIRENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQAF 762 (807)
Q Consensus 702 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~s~~~~~~y~~~ 762 (807)
|+++. ...|+++||+.|++++.++..+..+..++.|
T Consensus 369 Air~~-------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 369 ALRER-------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHHTT-------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHCC-------------------------CCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99869-------------------------9875999999999998572655540267641
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=429.60 Aligned_cols=263 Identities=36% Similarity=0.651 Sum_probs=244.5
Q ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEEC
Q ss_conf 21010148865222222134565613100366788356642068998622656799981789999999880780899856
Q 003623 469 RETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 548 (807)
Q Consensus 469 ~~~~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~ 548 (807)
.-...+.|+++|+||+|++++|+.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+|+|++++.+|+.+++
T Consensus 170 ~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 170 VMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp CCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred EEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 55433689986005576999999999999998769999986799977788448899963999999999985998799887
Q ss_pred CCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 20010023872677999999987189949998141023210399889998507999999999970888998389960489
Q 003623 549 PELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 628 (807)
Q Consensus 549 ~~l~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn 628 (807)
+++.++|+|++++.++.+|..|+..+||||||||||++++.|+...........+++++||++||+.....+|+||||||
T Consensus 250 s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 250 SELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 99531447669999999999998659918987612220366778887765899999999999724767889979999579
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999823469998863132179999999999999723599997114899998731487264999999999999999989
Q 003623 629 RPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 708 (807)
Q Consensus 629 ~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~ 708 (807)
+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.|+++.
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~-- 407 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER-- 407 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--
T ss_conf 805559988648860279980896999999999999648999976799999976799989999999999999999848--
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf 878998620599644643552222211388899999642799999999
Q 003623 709 KDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADI 756 (807)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~s~~~~ 756 (807)
...|+++||+.|++++.++.+++.+
T Consensus 408 -----------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 -----------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp -----------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------------------CCCCCHHHHHHHHHHHHCCCCHHHH
T ss_conf -----------------------9966999999999987079873347
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=428.02 Aligned_cols=273 Identities=40% Similarity=0.669 Sum_probs=251.5
Q ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 98875210101488652222221345656131003667883566420689986226567999817899999998807808
Q 003623 464 NPSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF 543 (807)
Q Consensus 464 ~ps~~~~~~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~ 543 (807)
.|........+.|+++|+||+|++++|+.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|
T Consensus 164 d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 164 DPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp CCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CCHHHEEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 74233013315999896671785999999999999987499999867989787699989999849999999999859998
Q ss_pred EEEECCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99856200100238726779999999871899499981410232103998899985079999999999708889983899
Q 003623 544 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 623 (807)
Q Consensus 544 i~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v 623 (807)
+.++++++.++|+|++++.++.+|..|+...||||||||||++++.|............+++++||++|||+....+++|
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred EEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 99841462055201789999999999986389646420443333333447887536899999999998346667798699
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 60489989998234699988631321799999999999997235999971148999987314872649999999999999
Q 003623 624 IGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAI 703 (807)
Q Consensus 624 iatTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~ 703 (807)
|+|||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++|+..+|+.|+||||+||.++|++|++.|+
T Consensus 324 I~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 324 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAI 403 (437)
T ss_dssp EEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99339903318978277710200135996999999999998658999864589999976899999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9998987899862059964464355222221138889999964279999999999999
Q 003623 704 RENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSDADIRKYQA 761 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~s~~~~~~y~~ 761 (807)
++. ...|+.+||..|++++.++...+....|++
T Consensus 404 r~~-------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~K 436 (437)
T 4b4t_L 404 RDD-------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQK 436 (437)
T ss_dssp HTT-------------------------CSSBCHHHHHHHHHHHHHTCC---------
T ss_pred HCC-------------------------CCCCCHHHHHHHHHHHHHCCCCCCCHHHHC
T ss_conf 869-------------------------987799999999999875037012356425
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.42 Aligned_cols=266 Identities=34% Similarity=0.662 Sum_probs=243.9
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCH
Q ss_conf 10148865222222134565613100366788356642068998622656799981789999999880780899856200
Q 003623 472 VVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 551 (807)
Q Consensus 472 ~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~~~l 551 (807)
..+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ECCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 15799998788545999999999999988429999987799999814764899980999999998446898699886995
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 10023872677999999987189949998141023210399889998507999999999970888998389960489989
Q 003623 552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 631 (807)
Q Consensus 552 ~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn~~~ 631 (807)
.++|+|++++.++.+|..|+..+||||||||+|.++..|+...+.......++++++|++||+.....+|+||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 02667789999999999987617846752232110135567677862789999999999865557888379882878931
Q ss_pred CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99823469998863132179999999999999723599997114899998731487264999999999999999989878
Q 003623 632 IIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 711 (807)
Q Consensus 632 ~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~ 711 (807)
.||||++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 179546366655079983896999999999998548999877799999977799999999999999999999838-----
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf 99862059964464355222221138889999964279999-9999999999
Q 003623 712 ERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVS-DADIRKYQAF 762 (807)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~s-~~~~~~y~~~ 762 (807)
...|+.+||+.|+.++.++.. .....+|..|
T Consensus 435 --------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 435 --------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp --------------------CSSBCHHHHHHHHHHHHHHHCC----------
T ss_pred --------------------CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf --------------------87669999999999996474561257899861
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=423.85 Aligned_cols=264 Identities=38% Similarity=0.644 Sum_probs=244.7
Q ss_pred CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 88752101014886522222213456561310036678835664206899862265679998178999999988078089
Q 003623 465 PSALRETVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 544 (807)
Q Consensus 465 ps~~~~~~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i 544 (807)
|........+.|+++|+||+|++++|+.|.+.+.+|+.+++.|.++|+.+++|+|||||||||||++|+|+|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 31343266889799867609579999999999999974999998679998872687794999889999999999599889
Q ss_pred EEECCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 98562001002387267799999998718994999814102321039988999850799999999997088899838996
Q 003623 545 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 624 (807)
Q Consensus 545 ~i~~~~l~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 624 (807)
.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|....+.......+++++||++||++....+|+||
T Consensus 245 ~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred EEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 98644643134563899999999999861990896033256652257788887469999999999971366888998999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 04899899982346999886313217999999999999972359999711489999873148726499999999999999
Q 003623 625 GATNRPDIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 704 (807)
Q Consensus 625 atTn~~~~ld~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~ 704 (807)
||||+|+.||||++||||||+.|+|++||.++|.+||+.+++++++..++++..+|+.|+||||+||.++|++|++.|++
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 94899223399671577403899808959999999999985689998767999999868998999999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 9989878998620599644643552222211388899999642799999
Q 003623 705 ENIEKDIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSVSD 753 (807)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~s~ 753 (807)
+. ...|+.+||..|+.+++|+.+.
T Consensus 405 ~~-------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 405 NG-------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HT-------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred CC-------------------------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf 69-------------------------9876999999999997377775
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=420.29 Aligned_cols=264 Identities=40% Similarity=0.653 Sum_probs=244.5
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCC
Q ss_conf 01014886522222213456561310036678835664206899862265679998178999999988078089985620
Q 003623 471 TVVEVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 550 (807)
Q Consensus 471 ~~~~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~~~ 550 (807)
...+.|+++|+||+|++++|+.|.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 67789999888851699999999999999873999998679998865888898998889999999998679969993304
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 01002387267799999998718994999814102321039988999850799999999997088899838996048998
Q 003623 551 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 630 (807)
Q Consensus 551 l~~~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn~~ 630 (807)
+.++|+|++++.++.+|..|+..+|||+||||+|++++.|.......+....+++++||++|||+....+++||||||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 43145460599999999999973997463002243303556787888718999999999984387877997999961981
Q ss_pred CCCCCCCCCCCCCCCEEECC-CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99982346999886313217-99999999999997235999971148999987314872649999999999999999898
Q 003623 631 DIIDPALLRPGRLDQLIYIP-LPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 709 (807)
Q Consensus 631 ~~ld~allr~gRf~~~i~~~-~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~ 709 (807)
+.||||++||||||+.|+|| +|+.++|..||+.+++++++..++++..+|..|+||||+||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
T ss_conf 55696663687515999819999999999999998557999963589999977799889999999999999999879---
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf 7899862059964464355222221138889999964-2799999999999
Q 003623 710 DIERERRRSENPEAMEEDVEDEVAEIKAVHFEESMKY-ARRSVSDADIRKY 759 (807)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~-~~~s~s~~~~~~y 759 (807)
...|+++||+.|+.. ++++.+.++++.|
T Consensus 399 ----------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 ----------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp ----------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred ----------------------CCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf ----------------------98779999999999761766895475541
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=382.12 Aligned_cols=285 Identities=36% Similarity=0.646 Sum_probs=247.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEEECCCHHH
Q ss_conf 14886522222213456561310036678835664206899862265679998178999999988078089985620010
Q 003623 474 EVPNVNWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 553 (807)
Q Consensus 474 ~~p~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~lakaiA~~~~~~~i~i~~~~l~~ 553 (807)
..|.+.|+||+|++++++.|++.+.+|+.+++.|..++..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 58999903514999999999999998751989886358999975897798999889999999997198399997379543
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 02387267799999998718994999814102321039988999850799999999997088899838996048998999
Q 003623 554 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 633 (807)
Q Consensus 554 ~~vg~se~~i~~if~~a~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~viatTn~~~~l 633 (807)
+|+|++++.++.+|+.|+...||||||||||.+++.|+... +....+++++||.+||++....+|+||+|||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCC---CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHC
T ss_conf 33167899999999999972992999851002334457788---739999999999997466666987999966980326
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82346999886313217999999999999972359999711489999873148726499999999999999998987899
Q 003623 634 DPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 713 (807)
Q Consensus 634 d~allr~gRf~~~i~~~~p~~~~r~~Il~~~~~~~~~~~~~~~~~la~~~~g~sg~di~~i~~~a~~~a~~~~~~~~~~~ 713 (807)
|++++|||||++.|++++||.++|.+||+.+++++++..++++..+|..|.||+|+||.++|++|++.|+++.......
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~- 432 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL- 432 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG-
T ss_pred CHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-
T ss_conf 9888578636168866897989999999998568998864389999975689989999999999999999841451200-
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHHHHC
Q ss_conf 86205996446435522222113888999996427999-----------999999999999998101
Q 003623 714 ERRRSENPEAMEEDVEDEVAEIKAVHFEESMKYARRSV-----------SDADIRKYQAFAQTLQQS 769 (807)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~al~~~~~s~-----------s~~~~~~y~~~~~~~~~~ 769 (807)
... .. ..+......++.+||..|+..++|+. +-.++-.+++..+.+...
T Consensus 433 -----~~~-~~-~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~ 492 (806)
T 3cf2_A 433 -----EDE-TI-DAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQEL 492 (806)
T ss_dssp -----TCC-CC-SHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTT
T ss_pred -----CCC-CC-CHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf -----013-32-0455225565199999999728783112344457887888817889999999999
Done!