Query 003624
Match_columns 807
No_of_seqs 689 out of 3329
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028 Ca2+-dependent phospho 99.9 5.6E-22 1.2E-26 221.5 25.0 104 2-108 168-277 (421)
2 cd04016 C2_Tollip C2 domain pr 99.9 2.1E-22 4.6E-27 186.6 14.9 118 537-657 2-121 (121)
3 COG5038 Ca2+-dependent lipid-b 99.9 1.1E-19 2.3E-24 212.1 28.6 123 535-658 1038-1161(1227)
4 cd04016 C2_Tollip C2 domain pr 99.9 9.7E-21 2.1E-25 175.5 15.9 117 2-125 3-121 (121)
5 cd08682 C2_Rab11-FIP_classI C2 99.9 6.5E-21 1.4E-25 179.3 13.6 117 539-656 1-126 (126)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 2.9E-20 6.3E-25 174.9 14.8 120 3-124 1-126 (126)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.3E-20 1.2E-24 170.5 15.6 115 538-658 1-115 (116)
8 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.9E-20 8.4E-25 178.6 14.9 120 539-659 2-133 (150)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 7.1E-20 1.5E-24 171.0 16.0 118 539-658 2-120 (121)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 7.8E-20 1.7E-24 170.6 14.0 113 539-653 2-125 (126)
11 cd08681 C2_fungal_Inn1p-like C 99.8 5.1E-20 1.1E-24 171.1 12.0 117 537-657 1-118 (118)
12 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.2E-19 2.5E-24 171.0 13.5 119 539-658 2-126 (127)
13 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.9E-19 8.5E-24 171.6 17.0 126 3-128 2-134 (150)
14 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.1E-19 4.6E-24 169.3 14.7 121 2-126 1-126 (127)
15 cd04036 C2_cPLA2 C2 domain pre 99.8 2.3E-19 5E-24 167.0 13.9 115 538-658 1-118 (119)
16 cd04024 C2A_Synaptotagmin-like 99.8 2.6E-19 5.6E-24 168.8 14.1 120 537-657 1-128 (128)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 5E-19 1.1E-23 165.2 15.8 119 2-126 1-120 (121)
18 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.2E-19 7E-24 166.3 13.4 117 539-657 2-121 (121)
19 cd08395 C2C_Munc13 C2 domain t 99.8 3E-19 6.6E-24 165.1 13.1 103 539-643 2-114 (120)
20 cd08375 C2_Intersectin C2 doma 99.8 5.9E-19 1.3E-23 167.8 15.3 119 535-658 13-136 (136)
21 cd08391 C2A_C2C_Synaptotagmin_ 99.8 4.2E-19 9.1E-24 165.6 13.9 115 537-657 1-121 (121)
22 cd08379 C2D_MCTP_PRT_plant C2 99.8 6E-19 1.3E-23 164.6 14.4 115 3-121 2-125 (126)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-18 2.4E-23 162.7 15.2 118 3-125 2-121 (121)
24 cd04024 C2A_Synaptotagmin-like 99.8 1.3E-18 2.8E-23 164.1 15.4 124 2-125 2-128 (128)
25 KOG1030 Predicted Ca2+-depende 99.8 2.9E-19 6.3E-24 168.9 10.1 94 536-631 5-98 (168)
26 cd08678 C2_C21orf25-like C2 do 99.8 1.5E-18 3.3E-23 163.2 14.4 118 539-660 1-122 (126)
27 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.5E-18 3.2E-23 162.6 14.1 116 539-655 2-122 (123)
28 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.3E-18 2.9E-23 162.1 13.2 113 539-657 2-119 (121)
29 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.9E-18 4E-23 161.1 14.0 115 3-125 2-119 (121)
30 cd08400 C2_Ras_p21A1 C2 domain 99.8 3E-18 6.4E-23 161.1 15.4 116 538-658 5-123 (126)
31 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 2.5E-18 5.4E-23 163.3 15.0 122 2-125 1-132 (133)
32 cd04015 C2_plant_PLD C2 domain 99.8 3.4E-18 7.5E-23 166.8 15.8 118 537-657 7-157 (158)
33 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3.9E-18 8.4E-23 159.2 14.2 116 539-656 2-120 (121)
34 cd04017 C2D_Ferlin C2 domain f 99.8 6.6E-18 1.4E-22 160.8 16.0 122 2-128 2-134 (135)
35 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.9E-18 1.5E-22 156.3 15.7 113 3-126 2-115 (116)
36 cd08678 C2_C21orf25-like C2 do 99.8 7.1E-18 1.5E-22 158.6 15.7 120 3-128 1-122 (126)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 6.6E-18 1.4E-22 158.2 15.2 119 2-123 1-122 (123)
38 cd08681 C2_fungal_Inn1p-like C 99.8 3.7E-18 8E-23 158.6 13.3 115 2-125 2-118 (118)
39 cd08381 C2B_PI3K_class_II C2 d 99.8 2E-18 4.3E-23 161.2 10.9 102 536-639 12-121 (122)
40 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.2E-18 1.8E-22 156.5 15.1 117 537-657 1-118 (119)
41 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.6E-18 1E-22 161.5 13.6 118 538-657 1-132 (133)
42 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.3E-17 2.8E-22 155.1 16.2 117 2-125 2-118 (119)
43 cd04010 C2B_RasA3 C2 domain se 99.8 2.8E-18 6E-23 164.9 12.0 101 539-642 2-123 (148)
44 cd08375 C2_Intersectin C2 doma 99.8 1.2E-17 2.6E-22 158.8 16.0 117 2-125 16-135 (136)
45 cd04050 C2B_Synaptotagmin-like 99.8 3.9E-18 8.4E-23 155.1 11.9 101 538-642 1-103 (105)
46 cd04043 C2_Munc13_fungal C2 do 99.8 9.4E-18 2E-22 157.8 14.9 118 538-662 2-125 (126)
47 cd04014 C2_PKC_epsilon C2 doma 99.8 1.1E-17 2.4E-22 158.6 15.4 114 537-659 4-130 (132)
48 KOG2059 Ras GTPase-activating 99.8 8.6E-18 1.9E-22 186.7 16.4 118 2-125 6-124 (800)
49 cd04010 C2B_RasA3 C2 domain se 99.8 5E-18 1.1E-22 163.1 12.5 118 2-123 1-147 (148)
50 cd04046 C2_Calpain C2 domain p 99.8 2E-17 4.3E-22 155.5 16.3 120 2-127 4-123 (126)
51 cd08677 C2A_Synaptotagmin-13 C 99.8 3.6E-18 7.7E-23 155.9 10.6 101 535-639 12-118 (118)
52 KOG1030 Predicted Ca2+-depende 99.8 4.5E-18 9.8E-23 160.8 10.9 91 2-92 7-97 (168)
53 cd04028 C2B_RIM1alpha C2 domai 99.7 9.9E-18 2.2E-22 160.1 13.1 107 536-644 28-141 (146)
54 cd04027 C2B_Munc13 C2 domain s 99.7 1.8E-17 4E-22 156.0 14.8 115 2-123 2-127 (127)
55 cd08400 C2_Ras_p21A1 C2 domain 99.7 4E-17 8.6E-22 153.4 16.8 118 2-127 5-124 (126)
56 cd04046 C2_Calpain C2 domain p 99.7 2.9E-17 6.3E-22 154.4 15.9 118 536-658 2-122 (126)
57 cd08394 C2A_Munc13 C2 domain f 99.7 1.4E-17 3E-22 153.5 13.3 101 2-108 3-103 (127)
58 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.8E-17 6.1E-22 153.4 15.7 118 3-124 2-120 (121)
59 cd04017 C2D_Ferlin C2 domain f 99.7 2.3E-17 5E-22 157.0 14.8 118 538-658 2-132 (135)
60 cd08382 C2_Smurf-like C2 domai 99.7 2.1E-17 4.4E-22 154.8 14.1 119 2-123 1-122 (123)
61 cd04027 C2B_Munc13 C2 domain s 99.7 2.5E-17 5.4E-22 155.1 14.1 115 538-655 2-127 (127)
62 cd08381 C2B_PI3K_class_II C2 d 99.7 1.6E-17 3.5E-22 155.1 12.4 99 2-104 14-121 (122)
63 cd08395 C2C_Munc13 C2 domain t 99.7 2.2E-17 4.9E-22 152.7 12.8 104 2-109 1-115 (120)
64 cd08373 C2A_Ferlin C2 domain f 99.7 3.9E-17 8.5E-22 153.8 14.7 117 543-662 2-120 (127)
65 cd08688 C2_KIAA0528-like C2 do 99.7 1.3E-17 2.8E-22 152.9 10.9 101 539-640 1-108 (110)
66 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.7E-17 3.7E-22 155.6 11.8 105 535-640 13-125 (125)
67 cd04015 C2_plant_PLD C2 domain 99.7 7.6E-17 1.6E-21 157.3 16.7 119 2-125 8-157 (158)
68 cd04036 C2_cPLA2 C2 domain pre 99.7 4.4E-17 9.6E-22 151.6 14.1 113 3-126 2-118 (119)
69 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.5E-17 5.5E-22 154.9 12.0 104 2-105 16-128 (128)
70 cd04028 C2B_RIM1alpha C2 domai 99.7 3.9E-17 8.5E-22 156.0 13.4 104 2-108 30-140 (146)
71 cd08393 C2A_SLP-1_2 C2 domain 99.7 2E-17 4.3E-22 155.3 11.0 104 536-640 14-125 (125)
72 cd04039 C2_PSD C2 domain prese 99.7 3E-17 6.5E-22 149.7 11.7 94 537-631 1-99 (108)
73 cd04041 C2A_fungal C2 domain f 99.7 1.8E-17 3.9E-22 152.2 10.3 100 537-640 1-107 (111)
74 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.4E-17 7.3E-22 153.6 11.9 105 535-640 14-123 (124)
75 cd08688 C2_KIAA0528-like C2 do 99.7 4.8E-17 1E-21 149.1 12.4 104 3-106 1-109 (110)
76 cd08677 C2A_Synaptotagmin-13 C 99.7 3.7E-17 8.1E-22 149.3 11.4 97 2-104 15-118 (118)
77 cd08385 C2A_Synaptotagmin-1-5- 99.7 4.5E-17 9.8E-22 152.7 12.3 105 535-640 14-123 (124)
78 cd04040 C2D_Tricalbin-like C2 99.7 6.6E-17 1.4E-21 149.5 13.2 113 539-653 1-114 (115)
79 cd04050 C2B_Synaptotagmin-like 99.7 5.7E-17 1.2E-21 147.4 12.4 101 3-107 2-103 (105)
80 KOG1032 Uncharacterized conser 99.7 7.6E-18 1.7E-22 193.4 8.1 358 443-801 3-362 (590)
81 cd08382 C2_Smurf-like C2 domai 99.7 5.4E-17 1.2E-21 151.9 12.3 114 539-655 2-122 (123)
82 cd04044 C2A_Tricalbin-like C2 99.7 1.2E-16 2.6E-21 149.6 13.4 118 537-658 2-123 (124)
83 cd04031 C2A_RIM1alpha C2 domai 99.7 7.7E-17 1.7E-21 151.3 11.9 104 535-640 14-125 (125)
84 cd08393 C2A_SLP-1_2 C2 domain 99.7 7.7E-17 1.7E-21 151.3 11.8 101 2-105 16-125 (125)
85 cd08392 C2A_SLP-3 C2 domain fi 99.7 8.1E-17 1.8E-21 151.4 11.7 105 535-640 13-128 (128)
86 cd08394 C2A_Munc13 C2 domain f 99.7 1.3E-16 2.8E-21 147.1 12.8 98 537-641 2-101 (127)
87 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2E-16 4.3E-21 147.5 14.3 113 2-125 2-121 (121)
88 cd08685 C2_RGS-like C2 domain 99.7 6.2E-17 1.3E-21 150.4 10.4 103 535-639 10-119 (119)
89 cd04018 C2C_Ferlin C2 domain t 99.7 1.1E-16 2.3E-21 154.2 12.1 103 539-642 2-126 (151)
90 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-16 3.4E-21 149.2 13.1 105 535-640 14-124 (125)
91 cd04018 C2C_Ferlin C2 domain t 99.7 1.7E-16 3.6E-21 152.9 12.9 107 2-108 1-127 (151)
92 cd04043 C2_Munc13_fungal C2 do 99.7 5.8E-16 1.2E-20 145.6 16.3 118 2-128 2-123 (126)
93 cd04030 C2C_KIAA1228 C2 domain 99.7 1.8E-16 3.8E-21 149.3 12.7 105 535-640 14-127 (127)
94 cd08373 C2A_Ferlin C2 domain f 99.7 5E-16 1.1E-20 146.2 15.4 114 7-128 2-118 (127)
95 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.3E-16 5.1E-21 147.9 12.7 101 2-105 16-125 (125)
96 KOG0696 Serine/threonine prote 99.7 2.5E-17 5.5E-22 173.4 6.8 123 517-641 153-288 (683)
97 cd08388 C2A_Synaptotagmin-4-11 99.7 2.7E-16 5.8E-21 148.1 12.8 105 535-640 14-127 (128)
98 cd04011 C2B_Ferlin C2 domain s 99.7 2.1E-16 4.5E-21 145.2 11.7 100 537-641 4-110 (111)
99 cd04051 C2_SRC2_like C2 domain 99.7 1.2E-16 2.6E-21 150.0 10.3 113 539-653 2-125 (125)
100 cd04044 C2A_Tricalbin-like C2 99.7 4.4E-16 9.6E-21 145.8 13.9 119 2-127 3-124 (124)
101 cd04014 C2_PKC_epsilon C2 doma 99.7 1E-15 2.2E-20 145.1 16.3 115 2-127 5-130 (132)
102 cd04051 C2_SRC2_like C2 domain 99.7 2.4E-16 5.2E-21 148.0 11.5 116 2-121 1-125 (125)
103 cd08685 C2_RGS-like C2 domain 99.7 2.5E-16 5.5E-21 146.2 11.4 100 1-104 12-119 (119)
104 cd04049 C2_putative_Elicitor-r 99.7 2.9E-16 6.2E-21 147.3 11.9 105 537-642 1-109 (124)
105 cd04011 C2B_Ferlin C2 domain s 99.7 3.5E-16 7.5E-21 143.7 12.1 101 2-106 5-110 (111)
106 cd08521 C2A_SLP C2 domain firs 99.7 2.8E-16 6.2E-21 147.0 11.4 104 535-639 12-123 (123)
107 cd08390 C2A_Synaptotagmin-15-1 99.7 4.7E-16 1E-20 145.5 12.8 105 535-640 12-122 (123)
108 cd04031 C2A_RIM1alpha C2 domai 99.7 4.3E-16 9.3E-21 146.2 12.5 101 1-105 16-125 (125)
109 cd08690 C2_Freud-1 C2 domain f 99.7 9.6E-16 2.1E-20 147.5 15.0 119 540-660 5-139 (155)
110 cd04045 C2C_Tricalbin-like C2 99.7 4.4E-16 9.6E-21 144.9 12.1 103 537-642 1-104 (120)
111 cd08680 C2_Kibra C2 domain fou 99.7 3.1E-16 6.8E-21 146.3 11.0 104 535-639 12-124 (124)
112 cd08691 C2_NEDL1-like C2 domai 99.7 1.5E-15 3.2E-20 144.1 15.7 118 2-123 2-136 (137)
113 cd04041 C2A_fungal C2 domain f 99.7 3.8E-16 8.2E-21 143.4 11.1 99 2-106 2-108 (111)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4.1E-16 8.8E-21 152.8 11.9 106 535-641 25-138 (162)
115 cd08387 C2A_Synaptotagmin-8 C2 99.7 6.3E-16 1.4E-20 145.0 12.6 101 2-105 17-123 (124)
116 cd08680 C2_Kibra C2 domain fou 99.7 4.5E-16 9.7E-21 145.2 11.4 101 2-104 15-124 (124)
117 cd04038 C2_ArfGAP C2 domain pr 99.7 5.6E-16 1.2E-20 148.5 11.9 91 537-630 2-92 (145)
118 cd08386 C2A_Synaptotagmin-7 C2 99.7 9.2E-16 2E-20 144.0 13.2 103 1-106 16-125 (125)
119 cd08676 C2A_Munc13-like C2 dom 99.7 4.5E-16 9.7E-21 150.1 11.2 99 535-639 26-153 (153)
120 cd08385 C2A_Synaptotagmin-1-5- 99.7 1E-15 2.2E-20 143.5 13.3 101 2-105 17-123 (124)
121 cd08388 C2A_Synaptotagmin-4-11 99.7 9.9E-16 2.1E-20 144.3 13.1 104 2-106 17-128 (128)
122 cd08675 C2B_RasGAP C2 domain s 99.7 5.1E-16 1.1E-20 147.9 11.2 103 539-643 1-122 (137)
123 cd04039 C2_PSD C2 domain prese 99.7 1E-15 2.3E-20 139.5 12.5 91 2-92 2-98 (108)
124 cd08389 C2A_Synaptotagmin-14_1 99.7 8E-16 1.7E-20 144.1 12.0 105 535-641 14-124 (124)
125 cd08389 C2A_Synaptotagmin-14_1 99.7 1E-15 2.2E-20 143.4 12.5 102 1-106 16-124 (124)
126 KOG1032 Uncharacterized conser 99.6 8.2E-16 1.8E-20 176.8 14.1 154 254-415 279-435 (590)
127 PF02893 GRAM: GRAM domain; I 99.6 9.2E-17 2E-21 134.1 4.6 67 690-756 1-69 (69)
128 cd04013 C2_SynGAP_like C2 doma 99.6 3.3E-15 7.3E-20 142.3 15.7 119 2-128 12-141 (146)
129 cd08383 C2A_RasGAP C2 domain ( 99.6 1.4E-15 3.1E-20 140.8 12.9 112 539-657 2-117 (117)
130 cd04013 C2_SynGAP_like C2 doma 99.6 2.5E-15 5.5E-20 143.1 14.2 116 538-659 12-140 (146)
131 cd04030 C2C_KIAA1228 C2 domain 99.6 1.8E-15 3.9E-20 142.5 12.9 102 1-105 16-127 (127)
132 cd04032 C2_Perforin C2 domain 99.6 1.1E-15 2.4E-20 142.9 10.7 92 535-628 26-118 (127)
133 cd04037 C2E_Ferlin C2 domain f 99.6 1.1E-15 2.4E-20 143.2 10.7 90 538-628 1-92 (124)
134 cd04021 C2_E3_ubiquitin_ligase 99.6 3.2E-15 7E-20 140.3 13.2 114 538-655 3-124 (125)
135 cd08691 C2_NEDL1-like C2 domai 99.6 5.5E-15 1.2E-19 140.2 14.4 114 538-655 2-136 (137)
136 cd08521 C2A_SLP C2 domain firs 99.6 3.1E-15 6.8E-20 139.9 12.6 101 1-104 14-123 (123)
137 cd04049 C2_putative_Elicitor-r 99.6 3.9E-15 8.5E-20 139.5 13.0 104 2-108 2-110 (124)
138 cd08675 C2B_RasGAP C2 domain s 99.6 3.1E-15 6.8E-20 142.5 11.7 102 3-108 1-122 (137)
139 cd08383 C2A_RasGAP C2 domain ( 99.6 7.1E-15 1.5E-19 136.2 13.9 112 3-125 2-117 (117)
140 cd04045 C2C_Tricalbin-like C2 99.6 5.6E-15 1.2E-19 137.5 13.0 103 2-108 2-105 (120)
141 cd04052 C2B_Tricalbin-like C2 99.6 3E-15 6.5E-20 137.5 11.1 99 554-658 9-109 (111)
142 cd08384 C2B_Rabphilin_Doc2 C2 99.6 9.2E-16 2E-20 145.7 7.9 105 535-642 11-122 (133)
143 cd04021 C2_E3_ubiquitin_ligase 99.6 1.1E-14 2.3E-19 136.7 14.9 119 2-123 3-124 (125)
144 cd08690 C2_Freud-1 C2 domain f 99.6 1.2E-14 2.6E-19 140.0 15.4 118 3-127 4-138 (155)
145 cd04009 C2B_Munc13-like C2 dom 99.6 3.6E-15 7.9E-20 141.6 11.4 96 1-96 16-123 (133)
146 cd00275 C2_PLC_like C2 domain 99.6 1E-14 2.2E-19 137.4 14.3 115 538-657 3-127 (128)
147 cd08390 C2A_Synaptotagmin-15-1 99.6 6.7E-15 1.5E-19 137.7 12.8 102 2-106 15-123 (123)
148 cd08406 C2B_Synaptotagmin-12 C 99.6 3.8E-15 8.2E-20 141.4 10.4 102 536-640 14-122 (136)
149 cd04038 C2_ArfGAP C2 domain pr 99.6 8E-15 1.7E-19 140.5 12.6 89 2-91 3-91 (145)
150 cd00275 C2_PLC_like C2 domain 99.6 2.2E-14 4.8E-19 135.1 15.3 116 1-125 2-127 (128)
151 KOG0696 Serine/threonine prote 99.6 4.6E-16 1E-20 164.0 4.1 103 2-108 181-290 (683)
152 cd04026 C2_PKC_alpha_gamma C2 99.6 6.5E-15 1.4E-19 139.5 11.5 106 535-642 11-122 (131)
153 cd08407 C2B_Synaptotagmin-13 C 99.6 4.3E-15 9.2E-20 141.0 10.1 102 535-639 13-123 (138)
154 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.8E-15 4E-20 144.2 7.6 105 535-642 13-124 (136)
155 cd04040 C2D_Tricalbin-like C2 99.6 1.4E-14 3E-19 133.8 13.3 112 3-121 1-114 (115)
156 cd08676 C2A_Munc13-like C2 dom 99.6 8.5E-15 1.8E-19 141.2 11.6 96 1-104 28-153 (153)
157 cd08406 C2B_Synaptotagmin-12 C 99.6 1.1E-14 2.3E-19 138.3 11.7 100 2-106 16-123 (136)
158 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 8.6E-15 1.9E-19 143.4 11.3 102 2-106 28-138 (162)
159 cd04032 C2_Perforin C2 domain 99.6 9E-15 1.9E-19 136.8 10.9 88 2-90 29-118 (127)
160 cd04009 C2B_Munc13-like C2 dom 99.6 7.5E-15 1.6E-19 139.4 10.3 92 536-628 15-117 (133)
161 cd04048 C2A_Copine C2 domain f 99.6 7.3E-15 1.6E-19 136.9 9.9 98 543-640 6-113 (120)
162 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.1E-14 2.4E-19 138.9 11.3 105 535-642 13-124 (136)
163 PLN03008 Phospholipase D delta 99.6 1.3E-14 2.9E-19 168.1 14.1 122 537-661 14-180 (868)
164 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.1E-14 2.4E-19 138.8 11.2 104 535-641 13-123 (136)
165 cd08410 C2B_Synaptotagmin-17 C 99.6 9.9E-15 2.1E-19 138.9 10.6 106 535-642 12-124 (135)
166 cd08404 C2B_Synaptotagmin-4 C2 99.6 8E-15 1.7E-19 139.8 9.3 103 1-108 15-125 (136)
167 cd08407 C2B_Synaptotagmin-13 C 99.6 2E-14 4.3E-19 136.4 11.5 87 2-88 16-112 (138)
168 cd04037 C2E_Ferlin C2 domain f 99.6 1.9E-14 4.1E-19 134.8 11.2 88 3-90 2-92 (124)
169 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.3E-14 5.1E-19 136.0 11.2 102 2-108 14-123 (133)
170 smart00568 GRAM domain in gluc 99.5 7.8E-15 1.7E-19 119.3 6.5 60 697-756 1-61 (61)
171 cd08403 C2B_Synaptotagmin-3-5- 99.5 6.2E-15 1.3E-19 140.2 6.8 104 535-641 12-122 (134)
172 cd04026 C2_PKC_alpha_gamma C2 99.5 3.9E-14 8.5E-19 134.1 11.9 103 2-108 14-123 (131)
173 cd08686 C2_ABR C2 domain in th 99.5 6.4E-14 1.4E-18 127.6 12.6 93 539-639 1-107 (118)
174 cd08402 C2B_Synaptotagmin-1 C2 99.5 3.1E-14 6.6E-19 135.8 11.0 101 1-106 15-123 (136)
175 cd04035 C2A_Rabphilin_Doc2 C2 99.5 4.9E-14 1.1E-18 131.9 12.2 103 535-639 13-123 (123)
176 cd08408 C2B_Synaptotagmin-14_1 99.5 4.9E-14 1.1E-18 134.4 11.5 101 2-106 16-125 (138)
177 PLN03200 cellulose synthase-in 99.5 2.5E-14 5.5E-19 180.2 11.9 120 534-659 1977-2101(2102)
178 cd04052 C2B_Tricalbin-like C2 99.5 8.6E-14 1.9E-18 127.8 12.4 100 18-127 9-110 (111)
179 cd00276 C2B_Synaptotagmin C2 d 99.5 1.4E-14 3.1E-19 137.5 7.4 105 535-642 12-123 (134)
180 PLN03008 Phospholipase D delta 99.5 8.2E-14 1.8E-18 161.6 15.0 107 20-131 75-182 (868)
181 cd08408 C2B_Synaptotagmin-14_1 99.5 4.8E-14 1E-18 134.4 10.9 104 535-640 13-124 (138)
182 cd08405 C2B_Synaptotagmin-7 C2 99.5 7.7E-14 1.7E-18 133.0 12.3 89 1-89 15-111 (136)
183 cd08692 C2B_Tac2-N C2 domain s 99.5 3.1E-14 6.7E-19 133.3 9.1 103 535-639 12-121 (135)
184 KOG1011 Neurotransmitter relea 99.5 2.5E-14 5.5E-19 156.4 8.7 119 537-658 295-424 (1283)
185 cd04048 C2A_Copine C2 domain f 99.5 1.2E-13 2.7E-18 128.6 11.9 98 6-106 5-114 (120)
186 cd08692 C2B_Tac2-N C2 domain s 99.5 1.2E-13 2.7E-18 129.2 11.8 88 2-89 15-110 (135)
187 cd08409 C2B_Synaptotagmin-15 C 99.5 2.8E-14 6.1E-19 136.0 7.0 103 536-640 14-123 (137)
188 cd08410 C2B_Synaptotagmin-17 C 99.5 4.8E-14 1E-18 134.2 8.2 103 2-108 15-125 (135)
189 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.3E-13 5E-18 129.4 12.2 102 1-107 14-123 (134)
190 cd08409 C2B_Synaptotagmin-15 C 99.5 2.7E-13 5.9E-18 129.3 12.0 87 2-89 16-110 (137)
191 cd00276 C2B_Synaptotagmin C2 d 99.5 6.7E-14 1.5E-18 132.9 7.6 102 2-108 15-124 (134)
192 KOG1028 Ca2+-dependent phospho 99.5 2.8E-13 6.2E-18 151.8 13.3 125 537-662 167-298 (421)
193 KOG1011 Neurotransmitter relea 99.5 1.1E-13 2.4E-18 151.4 8.8 123 2-131 296-429 (1283)
194 cd04035 C2A_Rabphilin_Doc2 C2 99.5 5.8E-13 1.2E-17 124.7 12.2 90 2-92 16-114 (123)
195 cd08686 C2_ABR C2 domain in th 99.4 4.4E-13 9.5E-18 122.1 10.6 80 3-88 1-92 (118)
196 cd04047 C2B_Copine C2 domain s 99.4 5.2E-13 1.1E-17 122.4 10.6 88 541-630 4-101 (110)
197 PF00168 C2: C2 domain; Inter 99.4 8.7E-13 1.9E-17 114.1 9.9 82 539-621 1-85 (85)
198 cd04047 C2B_Copine C2 domain s 99.4 1E-12 2.2E-17 120.4 10.6 88 3-91 2-100 (110)
199 KOG1326 Membrane-associated pr 99.4 1.2E-13 2.6E-18 159.1 4.9 89 537-626 613-703 (1105)
200 PLN03200 cellulose synthase-in 99.4 1.8E-12 3.9E-17 163.8 11.3 114 2-126 1981-2100(2102)
201 PF00168 C2: C2 domain; Inter 99.4 4.5E-12 9.8E-17 109.6 10.3 81 3-83 1-85 (85)
202 cd00030 C2 C2 domain. The C2 d 99.3 1.9E-11 4.2E-16 108.0 10.8 100 539-639 1-102 (102)
203 KOG2059 Ras GTPase-activating 99.3 7.7E-12 1.7E-16 139.9 8.9 119 539-660 7-127 (800)
204 PLN02223 phosphoinositide phos 99.3 4.3E-11 9.2E-16 134.3 14.0 117 537-657 409-536 (537)
205 smart00239 C2 Protein kinase C 99.2 1E-10 2.3E-15 103.8 10.4 93 539-632 2-97 (101)
206 cd00030 C2 C2 domain. The C2 d 99.2 1.6E-10 3.5E-15 102.1 11.6 100 3-104 1-102 (102)
207 PLN02223 phosphoinositide phos 99.2 3.5E-10 7.6E-15 127.1 15.4 116 2-125 410-536 (537)
208 smart00239 C2 Protein kinase C 99.1 3.5E-10 7.6E-15 100.3 11.4 90 2-91 1-94 (101)
209 cd08374 C2F_Ferlin C2 domain s 99.1 3.3E-10 7.1E-15 106.2 10.3 92 539-631 2-125 (133)
210 PLN02952 phosphoinositide phos 99.1 5.2E-10 1.1E-14 128.4 13.7 117 537-657 470-598 (599)
211 cd08374 C2F_Ferlin C2 domain s 99.1 5.3E-10 1.1E-14 104.9 10.7 91 2-92 1-124 (133)
212 PLN02270 phospholipase D alpha 99.1 6.1E-10 1.3E-14 129.9 13.5 121 537-660 8-150 (808)
213 KOG1328 Synaptic vesicle prote 99.1 2.3E-11 5E-16 135.5 1.4 96 532-628 942-1048(1103)
214 PLN02952 phosphoinositide phos 99.1 1.3E-09 2.9E-14 125.0 15.4 116 2-125 471-598 (599)
215 PLN02230 phosphoinositide phos 99.1 6.9E-10 1.5E-14 127.1 12.3 117 537-657 469-597 (598)
216 KOG0169 Phosphoinositide-speci 99.1 7.5E-10 1.6E-14 126.5 11.6 117 538-658 617-744 (746)
217 PLN02230 phosphoinositide phos 99.0 3.2E-09 7E-14 121.7 14.2 116 2-125 470-597 (598)
218 PLN02222 phosphoinositide phos 99.0 3.8E-09 8.2E-14 121.0 13.4 117 537-657 452-580 (581)
219 PLN02270 phospholipase D alpha 99.0 6.3E-09 1.4E-13 121.6 15.1 125 2-131 9-153 (808)
220 PLN02222 phosphoinositide phos 99.0 7.5E-09 1.6E-13 118.6 15.2 116 2-125 453-580 (581)
221 PLN02228 Phosphoinositide phos 98.9 5.7E-09 1.2E-13 119.2 13.5 118 537-658 431-561 (567)
222 PLN02228 Phosphoinositide phos 98.9 9.1E-09 2E-13 117.6 15.1 119 1-127 431-562 (567)
223 KOG0169 Phosphoinositide-speci 98.9 5.1E-09 1.1E-13 119.8 11.8 117 2-126 617-744 (746)
224 KOG1031 Predicted Ca2+-depende 98.9 4.3E-09 9.3E-14 114.8 8.2 122 537-660 3-138 (1169)
225 COG5038 Ca2+-dependent lipid-b 98.9 6.2E-09 1.3E-13 123.3 10.1 119 3-127 1042-1162(1227)
226 KOG1328 Synaptic vesicle prote 98.8 8.5E-10 1.8E-14 123.3 1.9 119 4-128 117-303 (1103)
227 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.6E-08 3.4E-13 89.3 8.7 84 3-91 1-88 (109)
228 KOG1264 Phospholipase C [Lipid 98.8 2.3E-08 4.9E-13 113.3 11.3 119 1-128 1065-1191(1267)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.7E-08 3.7E-13 89.0 8.1 82 539-627 1-86 (109)
230 KOG1031 Predicted Ca2+-depende 98.8 1.3E-08 2.9E-13 111.1 8.2 121 2-126 4-136 (1169)
231 KOG1264 Phospholipase C [Lipid 98.7 3.8E-08 8.3E-13 111.5 10.4 157 536-697 1064-1235(1267)
232 PLN02352 phospholipase D epsil 98.5 6.3E-07 1.4E-11 105.0 12.3 115 537-660 10-132 (758)
233 KOG1013 Synaptic vesicle prote 98.3 1.3E-07 2.8E-12 98.5 0.6 155 2-164 94-260 (362)
234 PLN02352 phospholipase D epsil 98.3 5.5E-06 1.2E-10 97.2 13.5 118 2-131 11-135 (758)
235 KOG4347 GTPase-activating prot 98.2 7.4E-07 1.6E-11 100.4 2.1 100 683-805 4-106 (671)
236 KOG1326 Membrane-associated pr 98.1 1.4E-06 3.1E-11 101.8 3.2 86 3-88 615-703 (1105)
237 KOG0905 Phosphoinositide 3-kin 98.0 7.3E-06 1.6E-10 97.0 5.2 103 2-107 1525-1636(1639)
238 PLN02964 phosphatidylserine de 97.9 1.2E-05 2.6E-10 93.9 6.1 90 535-632 52-142 (644)
239 KOG0905 Phosphoinositide 3-kin 97.9 8.2E-06 1.8E-10 96.6 4.0 105 535-640 1522-1634(1639)
240 KOG1013 Synaptic vesicle prote 97.8 2.4E-05 5.2E-10 81.8 5.2 85 2-86 234-326 (362)
241 cd08683 C2_C2cd3 C2 domain fou 97.6 0.00015 3.3E-09 66.2 7.4 100 3-104 1-143 (143)
242 KOG2060 Rab3 effector RIM1 and 97.3 0.00018 3.9E-09 76.7 3.4 106 2-109 270-382 (405)
243 PLN02964 phosphatidylserine de 97.2 0.00042 9.2E-09 81.2 5.8 84 3-93 56-141 (644)
244 KOG1327 Copine [Signal transdu 97.1 0.00069 1.5E-08 76.4 6.1 87 541-629 140-236 (529)
245 cd08683 C2_C2cd3 C2 domain fou 97.0 0.00078 1.7E-08 61.7 4.3 101 539-639 1-143 (143)
246 KOG3837 Uncharacterized conser 96.8 0.00093 2E-08 71.9 4.0 118 3-127 369-504 (523)
247 KOG1327 Copine [Signal transdu 96.8 0.0022 4.7E-08 72.5 6.9 85 6-91 141-236 (529)
248 KOG3837 Uncharacterized conser 96.8 0.0013 2.8E-08 70.8 4.7 125 537-662 367-507 (523)
249 KOG2060 Rab3 effector RIM1 and 96.6 0.0019 4E-08 69.2 4.0 105 537-643 269-381 (405)
250 PF12416 DUF3668: Cep120 prote 96.3 0.046 1E-06 59.7 12.9 121 539-662 2-136 (340)
251 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.026 5.6E-07 54.3 9.4 122 537-659 9-151 (156)
252 cd08684 C2A_Tac2-N C2 domain f 96.2 0.0061 1.3E-07 52.0 3.9 85 4-91 2-94 (103)
253 PF12416 DUF3668: Cep120 prote 96.0 0.099 2.2E-06 57.1 13.4 121 3-128 2-134 (340)
254 KOG1265 Phospholipase C [Lipid 96.0 0.014 3.1E-07 68.4 7.1 111 2-128 704-825 (1189)
255 KOG1265 Phospholipase C [Lipid 96.0 0.036 7.7E-07 65.2 10.2 110 537-658 703-823 (1189)
256 cd08684 C2A_Tac2-N C2 domain f 95.9 0.0056 1.2E-07 52.3 2.7 94 540-638 2-102 (103)
257 cd08398 C2_PI3K_class_I_alpha 95.6 0.15 3.4E-06 49.6 11.6 84 539-627 10-106 (158)
258 PF15627 CEP76-C2: CEP76 C2 do 95.5 0.2 4.4E-06 48.2 12.0 122 3-128 11-152 (156)
259 cd08398 C2_PI3K_class_I_alpha 95.4 0.24 5.2E-06 48.3 12.1 84 2-89 9-106 (158)
260 PF14470 bPH_3: Bacterial PH d 95.1 0.14 3E-06 45.1 8.8 81 698-800 1-83 (96)
261 cd08693 C2_PI3K_class_I_beta_d 95.1 0.14 3.1E-06 50.7 9.7 85 539-626 10-119 (173)
262 cd08693 C2_PI3K_class_I_beta_d 95.0 0.11 2.5E-06 51.4 8.8 86 2-89 9-120 (173)
263 cd08380 C2_PI3K_like C2 domain 94.6 0.19 4.2E-06 48.8 9.3 87 539-627 10-107 (156)
264 PF14844 PH_BEACH: PH domain a 94.0 0.069 1.5E-06 48.4 4.4 82 704-806 2-102 (106)
265 cd08397 C2_PI3K_class_III C2 d 93.8 0.51 1.1E-05 46.1 10.2 71 556-627 28-107 (159)
266 cd08380 C2_PI3K_like C2 domain 93.8 0.3 6.5E-06 47.5 8.7 87 2-89 9-107 (156)
267 cd04012 C2A_PI3K_class_II C2 d 93.5 0.31 6.7E-06 48.3 8.3 89 538-627 9-119 (171)
268 PF10358 NT-C2: N-terminal C2 93.5 2.7 5.9E-05 39.9 14.7 117 2-128 8-137 (143)
269 PF10358 NT-C2: N-terminal C2 93.4 2 4.2E-05 40.9 13.5 119 537-662 7-139 (143)
270 KOG1452 Predicted Rho GTPase-a 93.2 0.19 4.1E-06 52.7 6.3 116 535-658 49-167 (442)
271 cd04012 C2A_PI3K_class_II C2 d 92.3 0.49 1.1E-05 46.8 7.7 88 2-89 9-119 (171)
272 cd08687 C2_PKN-like C2 domain 92.1 1.6 3.5E-05 37.9 9.4 83 22-125 9-92 (98)
273 cd08397 C2_PI3K_class_III C2 d 91.7 0.57 1.2E-05 45.7 7.3 70 20-89 28-107 (159)
274 cd08687 C2_PKN-like C2 domain 91.5 2.1 4.6E-05 37.2 9.5 83 558-657 9-92 (98)
275 PF10698 DUF2505: Protein of u 91.1 12 0.00026 36.4 16.1 145 257-416 4-156 (159)
276 cd08399 C2_PI3K_class_I_gamma 91.1 1.8 3.9E-05 43.0 10.1 69 539-608 12-88 (178)
277 PF00792 PI3K_C2: Phosphoinosi 89.5 2.3 5E-05 40.6 9.3 55 572-627 23-85 (142)
278 cd08399 C2_PI3K_class_I_gamma 89.4 2.2 4.7E-05 42.5 9.1 69 2-71 11-88 (178)
279 PF11605 Vps36_ESCRT-II: Vacuo 87.3 2.5 5.4E-05 36.9 7.1 52 719-772 37-88 (89)
280 PF00792 PI3K_C2: Phosphoinosi 86.9 4.1 8.9E-05 38.9 9.1 55 35-89 22-85 (142)
281 smart00142 PI3K_C2 Phosphoinos 86.9 4.6 0.0001 36.0 8.9 71 539-609 13-92 (100)
282 KOG1452 Predicted Rho GTPase-a 84.0 2 4.3E-05 45.4 5.7 110 3-126 53-167 (442)
283 smart00142 PI3K_C2 Phosphoinos 82.9 5.7 0.00012 35.5 7.6 69 3-71 13-91 (100)
284 PF14429 DOCK-C2: C2 domain in 80.5 6.5 0.00014 39.3 7.9 55 571-626 61-120 (184)
285 cd08694 C2_Dock-A C2 domains f 79.5 9 0.00019 38.5 8.3 54 34-87 54-114 (196)
286 cd08695 C2_Dock-B C2 domains f 74.9 14 0.00031 37.0 8.3 54 34-87 54-112 (189)
287 PF14429 DOCK-C2: C2 domain in 74.2 9.5 0.00021 38.1 7.0 55 34-88 60-120 (184)
288 PF15625 CC2D2AN-C2: CC2D2A N- 72.5 19 0.00041 35.4 8.5 68 22-90 37-107 (168)
289 PF08567 TFIIH_BTF_p62_N: TFII 72.0 23 0.0005 30.2 7.8 54 709-770 6-61 (79)
290 KOG1329 Phospholipase D1 [Lipi 70.1 7.1 0.00015 47.3 5.6 99 558-658 138-240 (887)
291 cd08695 C2_Dock-B C2 domains f 69.5 11 0.00025 37.7 6.1 54 571-625 55-112 (189)
292 KOG0694 Serine/threonine prote 68.5 1.7 3.7E-05 50.9 0.2 97 557-662 27-125 (694)
293 COG4687 Uncharacterized protei 64.0 10 0.00022 34.1 4.0 63 718-800 23-85 (122)
294 cd08679 C2_DOCK180_related C2 62.4 42 0.00091 33.3 8.8 52 37-88 56-115 (178)
295 cd08694 C2_Dock-A C2 domains f 62.4 54 0.0012 33.1 9.3 55 571-625 55-114 (196)
296 cd08679 C2_DOCK180_related C2 59.9 19 0.00041 35.8 5.8 54 571-626 55-115 (178)
297 cd08697 C2_Dock-D C2 domains f 59.4 78 0.0017 31.7 9.9 39 33-71 56-97 (185)
298 PF15625 CC2D2AN-C2: CC2D2A N- 59.4 41 0.00088 33.1 8.0 68 558-628 37-107 (168)
299 PF06219 DUF1005: Protein of u 56.2 65 0.0014 36.0 9.3 106 22-128 36-169 (460)
300 PTZ00447 apical membrane antig 55.6 96 0.0021 33.7 10.2 111 537-656 58-171 (508)
301 PTZ00447 apical membrane antig 54.7 1.5E+02 0.0032 32.4 11.3 112 3-126 60-173 (508)
302 PF11618 DUF3250: Protein of u 54.7 64 0.0014 29.3 7.7 95 25-126 2-105 (107)
303 KOG1329 Phospholipase D1 [Lipi 54.7 18 0.00038 44.1 5.2 103 22-128 138-242 (887)
304 PF11618 DUF3250: Protein of u 53.9 45 0.00097 30.2 6.6 94 561-658 2-105 (107)
305 cd08696 C2_Dock-C C2 domains f 50.0 49 0.0011 33.0 6.7 39 33-71 54-95 (179)
306 cd01201 Neurobeachin Neurobeac 46.2 30 0.00065 31.3 4.1 81 703-804 2-97 (108)
307 PF11696 DUF3292: Protein of u 45.9 47 0.001 39.3 6.7 89 707-806 520-628 (642)
308 cd08696 C2_Dock-C C2 domains f 44.5 48 0.001 33.0 5.7 39 571-609 56-96 (179)
309 cd08903 START_STARD5-like Lipi 44.2 3.6E+02 0.0078 27.4 12.9 150 257-416 51-206 (208)
310 cd08868 START_STARD1_3_like Ch 44.1 3.5E+02 0.0077 27.3 13.4 93 317-416 107-206 (208)
311 PF10409 PTEN_C2: C2 domain of 41.8 2.5E+02 0.0054 26.0 10.1 87 2-89 5-97 (134)
312 KOG2419 Phosphatidylserine dec 41.1 6.3 0.00014 45.6 -1.2 57 557-615 304-361 (975)
313 cd08697 C2_Dock-D C2 domains f 40.3 78 0.0017 31.7 6.5 39 570-608 57-97 (185)
314 PF07162 B9-C2: Ciliary basal 39.9 3.1E+02 0.0068 26.8 10.8 78 3-86 4-101 (168)
315 PF06115 DUF956: Domain of unk 36.8 65 0.0014 29.6 4.7 40 715-755 20-59 (118)
316 KOG0694 Serine/threonine prote 36.6 12 0.00026 44.2 0.1 95 21-127 27-122 (694)
317 PF01060 DUF290: Transthyretin 34.2 1.3E+02 0.0029 25.4 6.2 40 594-643 8-47 (80)
318 PF01852 START: START domain; 34.1 4.8E+02 0.01 25.9 12.6 96 318-419 103-204 (206)
319 KOG0904 Phosphatidylinositol 3 32.1 78 0.0017 38.7 5.7 66 539-607 345-421 (1076)
320 cd08870 START_STARD2_7-like Li 31.9 5.5E+02 0.012 25.9 12.4 147 259-418 57-209 (209)
321 cd05137 RasGAP_CLA2_BUD2 CLA2/ 28.9 40 0.00086 38.1 2.6 59 78-146 1-59 (395)
322 cd08869 START_RhoGAP C-termina 28.7 3.3E+02 0.0071 27.4 9.1 77 311-393 92-176 (197)
323 cd05137 RasGAP_CLA2_BUD2 CLA2/ 27.9 73 0.0016 36.0 4.4 42 616-658 1-44 (395)
324 KOG4471 Phosphatidylinositol 3 26.8 1.1E+02 0.0024 35.7 5.6 68 691-760 29-97 (717)
325 cd07823 SRPBCC_5 Ligand-bindin 24.8 5.7E+02 0.012 23.8 10.2 64 344-417 77-142 (146)
326 PF12068 DUF3548: Domain of un 23.7 84 0.0018 32.2 3.6 37 739-778 111-147 (213)
327 cd08876 START_1 Uncharacterize 22.9 7.3E+02 0.016 24.4 13.1 139 256-410 45-189 (195)
328 cd05018 CoxG Carbon monoxide d 22.4 5.9E+02 0.013 23.1 9.4 59 352-418 84-142 (144)
329 KOG3543 Ca2+-dependent activat 21.5 3.9E+02 0.0085 31.5 8.5 113 539-657 343-458 (1218)
330 PF04283 CheF-arch: Chemotaxis 20.2 1.1E+02 0.0024 31.6 3.7 35 717-755 25-59 (221)
No 1
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=5.6e-22 Score=221.54 Aligned_cols=104 Identities=40% Similarity=0.657 Sum_probs=90.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~ 75 (807)
.|.|+|++|++|+.++..|.+||||++++.+ .+.+|++.++++||.|||+|.|.|.. ....|.+.|||.|+|++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr 247 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR 247 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence 5899999999999999778899999999964 57999999999999999999999832 35899999999999999
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
+++||++.++|..+.... ....|.+|.+..
T Consensus 248 ~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~ 277 (421)
T KOG1028|consen 248 HDFIGEVILPLGEVDLLS---TTLFWKDLQPSS 277 (421)
T ss_pred ccEEEEEEecCccccccc---cceeeecccccc
Confidence 999999999988875422 256798888654
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=2.1e-22 Score=186.56 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=105.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCC-CCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
|+|+|+|++|++|+..+ .|++||||+|.+++++.+|+++.+ ++||+|||+|.|.+.+. ...|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCC-CcCCc
Confidence 67999999999998887 799999999999999999999865 89999999999987654 4689999999999 99999
Q ss_pred cceeEEEEce-eccCCCceeEEEeCCCcCcCccCceEEEEEEE
Q 003624 616 SLGHAEINFV-KSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (807)
Q Consensus 616 ~lG~~~i~l~-~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~ 657 (807)
+||.+.|++. .+..++..+.|++|.++.+....|.|||.++|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 57777778999999987777788999999875
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=212.11 Aligned_cols=123 Identities=29% Similarity=0.489 Sum_probs=111.1
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~ 613 (807)
+.|-|+|.+..|.||+..|.+|.+||||++.+++++ ++|+++++|+||.|||+|.+++.......+.+.|+|||. -.+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 468899999999999999999999999999999996 999999999999999999999988778899999999999 889
Q ss_pred CccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 614 ATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 614 dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
+|.||.+.++|+.+..+.....-++|.++......|.+|+.+.+.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceecc
Confidence 999999999999999888888889999876445577777776664
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=9.7e-21 Score=175.48 Aligned_cols=117 Identities=23% Similarity=0.474 Sum_probs=102.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~-t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
+|+|+|++|++|+..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+....|.|+|||+|.+++|++||
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 5899999999998877 799999999999999999999976 79999999999999766678999999999999999999
Q ss_pred EEEeeccc-ccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 81 FLKIPVSR-VFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 81 ~v~i~L~~-l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
.+.|+|.. +.. +...+.||+|.++.++ ...|+|+|+++|
T Consensus 82 ~~~i~l~~~~~~---g~~~~~W~~L~~~~~~---~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFN---GETLDDWYSLSGKQGE---DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccC---CCCccccEeCcCccCC---CCceEEEEEEeC
Confidence 99999964 543 2346899999876543 467999999987
No 5
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=6.5e-21 Score=179.31 Aligned_cols=117 Identities=19% Similarity=0.328 Sum_probs=102.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeC-----CCCceEEEEEEEcCCCCCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-----EPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~-----~~~~~l~v~V~D~d~~~~~ 613 (807)
++|+|++|+||+.+|..|.+||||++.+++++++|+++++++||+|||.|.|.+.. .....|.|+|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999998865 246789999999998 889
Q ss_pred CccceeEEEEceecc--CCCceeEEEeCCCcCcC--ccCceEEEEEE
Q 003624 614 ATSLGHAEINFVKSD--ISDLADVWIPLQGKLAQ--ACQSKLHLRIF 656 (807)
Q Consensus 614 dd~lG~~~i~l~~l~--~~~~~~~w~~L~~k~~~--~~~G~l~l~l~ 656 (807)
|++||++.|++.++. .+...+.|++|.++.+. ...|+|+|+++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 999999999999976 55667899999865432 34799998874
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.9e-20 Score=174.90 Aligned_cols=120 Identities=32% Similarity=0.568 Sum_probs=104.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC------CCCEEEEEEEEcCCCCCC
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED------LKDELVISVLDEDKYFND 76 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~------~~~~L~i~V~D~d~~~~d 76 (807)
++|+|++|+||+.++..|.+||||++.+++++.+|+++++++||+|||+|.|.+.. ....|.++|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999999999999999999999999999999999999999999965 357899999999998889
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEE
Q 003624 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~ 124 (807)
++||++.|+|.++.... +.....||+|.++.++ ..+.+|+|+|++.
T Consensus 81 ~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~~-~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPGK-DDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccC-CCcccEEEECcCCCCC-CccccceEEEEeC
Confidence 99999999999986322 3346799999975542 2467899999873
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=5.3e-20 Score=170.46 Aligned_cols=115 Identities=26% Similarity=0.493 Sum_probs=105.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
+|+|+|++|+||++.|..|.+||||++.+++++++|+++++|+||.|||.|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 489999999999999999999999999999999999999999999999999998876657899999999998 8899999
Q ss_pred eeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
|++.+++.++..+...+.|++|.+. .|++++++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 9999999999888889999999743 58999998874
No 8
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=3.9e-20 Score=178.63 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=105.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCC-CCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|+|+|++|+||+++|..|.+||||++.++++..+|+++.+ |+||+|||.|+|.+.....+.|.|+|||++. .++|++|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~l 80 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEPL 80 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCeE
Confidence 8999999999999999999999999999999999998876 6999999999998865555789999999998 7889999
Q ss_pred eeEEEEceeccCC----CceeEEEeCCCcCc-------CccCceEEEEEEEee
Q 003624 618 GHAEINFVKSDIS----DLADVWIPLQGKLA-------QACQSKLHLRIFLNN 659 (807)
Q Consensus 618 G~~~i~l~~l~~~----~~~~~w~~L~~k~~-------~~~~G~l~l~l~~~~ 659 (807)
|++.|+|.++..+ ...+.||+|.+..+ ...+|+|||+++|..
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999997543 44589999997543 355899999999983
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=7.1e-20 Score=170.99 Aligned_cols=118 Identities=27% Similarity=0.443 Sum_probs=107.3
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|+|+|++|+||++.|..|.+||||++.++++ .++|+++.+++||.|||.|.|.+.. ....|.|+|||+|. +++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~-~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDR-GLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCC-CCCCcce
Confidence 8999999999999999999999999999884 5899999999999999999998754 36789999999999 8899999
Q ss_pred eeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
|++.+++.++..+...+.|++|.++.+....|.|+|++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999999999888899999998765556789999999875
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=7.8e-20 Score=170.55 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=100.0
Q ss_pred EEEEEEEeEc---CCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCC---
Q 003624 539 LTVALIKGDN---LAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN--- 612 (807)
Q Consensus 539 L~V~vi~a~~---L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~--- 612 (807)
|+|+|++|+| |+++|..|.+||||+|++++++.+|+++++++||+|||+|.|.+... ...|.|+|||+|. ++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~-~~~~~ 79 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQ-SHWKE 79 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCC-ccccc
Confidence 8999999999 89999999999999999999999999999999999999999987553 5689999999998 63
Q ss_pred ---CCccceeEEEEceeccCCCceeEEEeCCCcC--cCccCceEEE
Q 003624 613 ---EATSLGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHL 653 (807)
Q Consensus 613 ---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~--~~~~~G~l~l 653 (807)
+|++||++.+++..+..+...+.||+|.... +....|+|++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999998888889999998532 3345777765
No 11
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.82 E-value=5.1e-20 Score=171.14 Aligned_cols=117 Identities=22% Similarity=0.376 Sum_probs=102.8
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccC-CCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~-~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
|.|+|+|++|+||+..+..|.+||||++.++++.++|+++. +++||.|||.|.|.+..+..+.|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 56999999999999999999999999999999888888875 57999999999999877666789999999998 65 89
Q ss_pred cceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEE
Q 003624 616 SLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~ 657 (807)
+||++.+++.++..+...+.|++|..+. ...|+|+|+++|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999976666679999998643 467899999875
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.2e-19 Score=171.04 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=103.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCC---CceEEEEEEEcCCCCC-CC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP---PSMLDVEVYDFDGPFN-EA 614 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~---~~~l~v~V~D~d~~~~-~d 614 (807)
|+|+|++|++|++.|..|.+||||++.+++++++|+++++++||.|||.|.|.+.... ...|.|+|||++. +. .+
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~d 80 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRRR 80 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCCC
Confidence 8999999999999999999999999999999999999999999999999999875432 3579999999998 65 88
Q ss_pred ccceeEEEEceecc-CCCceeEEEeCCCcC-cCccCceEEEEEEEe
Q 003624 615 TSLGHAEINFVKSD-ISDLADVWIPLQGKL-AQACQSKLHLRIFLN 658 (807)
Q Consensus 615 d~lG~~~i~l~~l~-~~~~~~~w~~L~~k~-~~~~~G~l~l~l~~~ 658 (807)
++||++.+++.++. .+.....||+|+.+. .....|+|+|++.++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999976 566679999998653 234589999999875
No 13
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=3.9e-19 Score=171.63 Aligned_cols=126 Identities=31% Similarity=0.505 Sum_probs=108.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~-t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG 80 (807)
|+|+|++|+||++++.+|.+||||++.+++++.+|+++.+ +.||+|||.|.|.+.+. ...|.|+|||++.+++|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999977 69999999999999653 469999999999888899999
Q ss_pred EEEeeccccccc-CCCCCccEEEEcccCCC----CCCCCcceEEEEEEEEEec
Q 003624 81 FLKIPVSRVFDA-DNKSLPTAWHSLQPKNK----KSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 81 ~v~i~L~~l~~~-~~~~~~~~w~~L~~~~~----~~~~~~~G~I~l~l~~~~~ 128 (807)
++.|||.++... +.+....+||+|.+..+ ++..+.+|+|+|+++|.+.
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 999999998643 22345689999997653 2334678999999999754
No 14
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.1e-19 Score=169.28 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=105.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC----CCEEEEEEEEcCCCC-CC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDEDKYF-ND 76 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~----~~~L~i~V~D~d~~~-~d 76 (807)
+|.|+|++|+||++.+..|.+||||++.+++++++|++++++.||.|||.|.|.+.+. ...|.|+|||++.+. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 5899999999999999889999999999999999999999999999999999999643 358999999999876 89
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
++||++.+++.++.. .+....+||+|..++.. ...+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~--~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP--PSEAVVQRYPLEKRGLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC--CCCccceEeEeeeCCCC--CCccEEEEEEEEEc
Confidence 999999999999873 23346899999976432 35799999999874
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=2.3e-19 Score=166.98 Aligned_cols=115 Identities=23% Similarity=0.351 Sum_probs=102.8
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
+|+|+|++|+||++.+..|.+||||++.+++ ..++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 3899999999999999889999999999863 45899999999999999999998866556679999999998 7 89
Q ss_pred ccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 615 TSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 615 d~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
++||++.+++.++..+...+.|++|..+ ..|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 9999999999999988889999999754 478999999875
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=2.6e-19 Score=168.79 Aligned_cols=120 Identities=23% Similarity=0.414 Sum_probs=105.4
Q ss_pred eEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
|+|+|+|++|+||++.+. .|.+||||++.+++++++|+++++++||.|||.|.|.+.......|.|+|||+|. .+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 579999999999999998 8999999999999999999999999999999999998876557899999999998 8889
Q ss_pred ccceeEEEEceecc---CCCceeEEEeCCCcCc---CccCceEEEEEEE
Q 003624 615 TSLGHAEINFVKSD---ISDLADVWIPLQGKLA---QACQSKLHLRIFL 657 (807)
Q Consensus 615 d~lG~~~i~l~~l~---~~~~~~~w~~L~~k~~---~~~~G~l~l~l~~ 657 (807)
++||++.+++.++. .....+.|++|.++.. ....|+|+|++.+
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999976 3344689999987632 2358999999864
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=5e-19 Score=165.25 Aligned_cols=119 Identities=33% Similarity=0.581 Sum_probs=106.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
+|+|+|++|+||+..+.+|.+||||++.+++ ...+|+++.++.||.|||+|.|.+.+....|.|+|||++.++++++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 5899999999999999999999999999987 578999999999999999999999777789999999999988999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
++.+++.++... .....|++|.++.+ .+..|+|+|.++|.
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~~~---~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELN---KPTEVKLKLEDPNS---DEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCC---CCeEEEEECCCCCC---ccCceEEEEEEEEC
Confidence 999999998643 24678999986553 35799999999985
No 18
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=3.2e-19 Score=166.28 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=101.4
Q ss_pred EEEEEEEeEcCCCCC-CCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 539 LTVALIKGDNLAAVD-SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 539 L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
|+|+|++|+||++++ ..|.+||||.+.++++. ++|+++++|+||.|||+|.|.+... ...|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCC-CCCCce
Confidence 789999999999974 46889999999998764 8999999999999999999988643 5789999999999 899999
Q ss_pred ceeEEEEceeccCCCceeEEEeCCCcC-cCccCceEEEEEEE
Q 003624 617 LGHAEINFVKSDISDLADVWIPLQGKL-AQACQSKLHLRIFL 657 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~~~w~~L~~k~-~~~~~G~l~l~l~~ 657 (807)
||++.+++.++..+...+.|++|+... .....|+|||++.+
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999988777889999998642 22358999998764
No 19
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=3e-19 Score=165.12 Aligned_cols=103 Identities=19% Similarity=0.351 Sum_probs=90.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-------eeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEEcC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-------KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFD 608 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-------~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D~d 608 (807)
|+|+|++|+||+..+ .|.+||||+|.+.| ++++|+++.+|+||+|||+|+|++... ....|.|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999988 59999999999732 236899999999999999999998643 2356999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCCcC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 643 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~ 643 (807)
. .++|++||++.+++.++..++..+.|++|....
T Consensus 81 ~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 81 F-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred c-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 8 788999999999999999988889999997653
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=5.9e-19 Score=167.80 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=103.2
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
..|.|+|+|++|++|++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 347899999999999999999999999999999999999999999999999999998866556789999999998 8899
Q ss_pred ccceeEEEEceeccC-----CCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 615 TSLGHAEINFVKSDI-----SDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 615 d~lG~~~i~l~~l~~-----~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
++||++.+++.++.. ......|++|. ....|+|+|++.++
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~----~~~~g~i~l~~~~~ 136 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLH----EVPTGEVVVKLDLQ 136 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEeccc----cccceeEEEEEEeC
Confidence 999999999988764 33335677774 33568999998873
No 21
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=4.2e-19 Score=165.60 Aligned_cols=115 Identities=27% Similarity=0.509 Sum_probs=102.8
Q ss_pred eEEEEEEEEeEcCCCCCC------CCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCC
Q 003624 537 WLLTVALIKGDNLAAVDS------SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~------~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~ 610 (807)
|+|+|+|++|+||+..|. .|.+||||++.++++.++|+++++++||.|||.|.|.+.......|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 569999999999999875 3789999999999988999999999999999999998876667899999999998
Q ss_pred CCCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEE
Q 003624 611 FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFL 657 (807)
Q Consensus 611 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~ 657 (807)
. ++++||++.+++.++..++..+.|++|.+. .+|+|+|++++
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEeC
Confidence 6 889999999999998877778999999753 56899998764
No 22
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=6e-19 Score=164.58 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=100.9
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCC-----
Q 003624 3 LVVRVIEARN---IPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF----- 74 (807)
Q Consensus 3 L~V~Vi~A~~---L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~----- 74 (807)
|.|+|++|+| |+.++..|.+||||++++++++.+|+++.+++||+|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 8999999999 89999999999999999999999999999999999999999999777779999999999863
Q ss_pred -CCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEE
Q 003624 75 -NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (807)
Q Consensus 75 -~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (807)
+|++||++.++|..+...+ ....||+|.....+. .+..|+|++
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~-~~~~g~l~~ 125 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG-VKKMGELEC 125 (126)
T ss_pred CCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC-ccCCcEEEe
Confidence 8999999999999986432 357899999765442 466788875
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.1e-18 Score=162.72 Aligned_cols=118 Identities=27% Similarity=0.464 Sum_probs=102.1
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMD-QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|.|+|++|+||++++ .+|.+||||.+.++++ ..+|+++++++||.|||+|.|.+.+....|.|.|||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 789999999999974 4678999999999765 58999999999999999999999766689999999999999999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
.+.++++++... ...+.||+|++.... .+.+|+|+|++++
T Consensus 82 ~~~i~l~~l~~~---~~~~~w~~L~~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKY---YGKDTWFPLQPVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCC---CCcEeeEEEEccCCC--CcccEEEEEEEEC
Confidence 999999998642 246799999976433 3468999999874
No 24
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.3e-18 Score=164.08 Aligned_cols=124 Identities=31% Similarity=0.568 Sum_probs=108.3
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCce
Q 003624 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~ 78 (807)
.|+|+|++|+||+..+. .+.+||||.+.++.++.+|++++++.||.|||.|.|.+.. ....|.|+|||++.++++++
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~ 81 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDY 81 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCc
Confidence 48999999999999988 8899999999999999999999999999999999999965 56899999999999889999
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
||++.+++.++...........||+|.++.........|+|+|++++
T Consensus 82 lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 82 LGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999998743233346799999987544445789999999874
No 25
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=2.9e-19 Score=168.88 Aligned_cols=94 Identities=32% Similarity=0.497 Sum_probs=87.4
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
-|+|+|+|++|.||..+|..++|||||++++|+++.+|+++++++||+|||.|.|.+.+ +...|.++|||+|. +++||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~-fs~dD 82 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDT-FSSDD 82 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC-CCceEEEEEEeCCC-CCccc
Confidence 47899999999999999987999999999999999999999999999999999997765 48899999999999 99999
Q ss_pred cceeEEEEceeccCCC
Q 003624 616 SLGHAEINFVKSDISD 631 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~ 631 (807)
+||.|+|++..+....
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999999876544
No 26
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.79 E-value=1.5e-18 Score=163.19 Aligned_cols=118 Identities=24% Similarity=0.395 Sum_probs=103.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC--eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~--~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
|.|+|++|+||+. ..|.+||||++.+++ ++++|+++++++||.|||.|.|++... ...|.|+|||+|. .++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCC-CCCCce
Confidence 5799999999998 678999999999974 558999999999999999999987543 6789999999999 888999
Q ss_pred ceeEEEEceeccCCCceeEEEeCCCcCc--CccCceEEEEEEEeec
Q 003624 617 LGHAEINFVKSDISDLADVWIPLQGKLA--QACQSKLHLRIFLNNT 660 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~~~w~~L~~k~~--~~~~G~l~l~l~~~~~ 660 (807)
||++.+++.++..+.....|++|.++.+ ....|+|++++.|...
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999888777899999987632 4468999999999643
No 27
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.79 E-value=1.5e-18 Score=162.58 Aligned_cols=116 Identities=28% Similarity=0.513 Sum_probs=102.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccce
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG 618 (807)
|+|+|++|++|+++|..|.+||||++.+++..++|+++++++||.|||+|.|.+.......|.|+|||+|. ++++++||
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~iG 80 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFLG 80 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEeE
Confidence 89999999999999998999999999999999999999999999999999998876556789999999998 88999999
Q ss_pred eEEEEceeccCCCceeEEEeCCCcC-----cCccCceEEEEE
Q 003624 619 HAEINFVKSDISDLADVWIPLQGKL-----AQACQSKLHLRI 655 (807)
Q Consensus 619 ~~~i~l~~l~~~~~~~~w~~L~~k~-----~~~~~G~l~l~l 655 (807)
++.+++.++..+...+.|+.|.... .....|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999987777779999998532 223467777765
No 28
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.3e-18 Score=162.13 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=99.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccce
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLG 618 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG 618 (807)
|+|+|++|+||+++ .+||||++.++++..+|+++++++||.|||+|.|.+.......|.++|||+|. . ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 89999999999987 79999999999989999999999999999999998765456789999999998 5 788999
Q ss_pred eEEEEceeccCCC-----ceeEEEeCCCcCcCccCceEEEEEEE
Q 003624 619 HAEINFVKSDISD-----LADVWIPLQGKLAQACQSKLHLRIFL 657 (807)
Q Consensus 619 ~~~i~l~~l~~~~-----~~~~w~~L~~k~~~~~~G~l~l~l~~ 657 (807)
++.+++.++.... ..+.||+|.+..+....|+|+|.+.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999976432 24689999987655668999999876
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.9e-18 Score=161.15 Aligned_cols=115 Identities=34% Similarity=0.590 Sum_probs=101.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCceeEE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||.|||+|.|.+.. ....|.++|||++.+ ++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence 78999999999987 68999999999999999999999999999999999965 468899999999986 8999999
Q ss_pred EEeecccccccC--CCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 82 LKIPVSRVFDAD--NKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 82 v~i~L~~l~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+.++++++.... .+....+||+|.++.+ .+.+|+|+|++.|
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~ 119 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWF 119 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEe
Confidence 999999986532 2334679999998754 3688999999987
No 30
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=3e-18 Score=161.08 Aligned_cols=116 Identities=16% Similarity=0.330 Sum_probs=100.0
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
.|+|+|++|+||++. +.+||||.+.+++.+ .+|+++ +++||.|||.|.|.+.+.....|.|.|||+|. +++|++
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~~ 79 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDSE 79 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCCe
Confidence 499999999999985 479999999998865 688875 68999999999997654434679999999999 899999
Q ss_pred ceeEEEEceeccCCCceeEEEeCCCcC--cCccCceEEEEEEEe
Q 003624 617 LGHAEINFVKSDISDLADVWIPLQGKL--AQACQSKLHLRIFLN 658 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~~~w~~L~~k~--~~~~~G~l~l~l~~~ 658 (807)
||++.|++.++..+...+.|++|.+.. +....|+|+|++.|.
T Consensus 80 iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 80 IAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred EEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 999999999988888889999998754 344579999999986
No 31
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=2.5e-18 Score=163.31 Aligned_cols=122 Identities=30% Similarity=0.551 Sum_probs=105.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-------~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~ 74 (807)
.|+|+|++|+||+..+..|.+||||++.+++. +.+|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 38999999999999998899999999999654 57999999999999999999999766788999999999988
Q ss_pred CCceeEEEEeecccccccCCC---CCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 75 NDDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
++++||++.+++.++...... .....||+|.++.+. .+..|+|+|++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC--CcceeEEEEEEee
Confidence 999999999999999753321 246799999975433 4679999999988
No 32
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=3.4e-18 Score=166.76 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=101.9
Q ss_pred eEEEEEEEEeEcCCCCC------------------------------CCCCCCcEEEEEECCee-EEeeccCCCCCCeEe
Q 003624 537 WLLTVALIKGDNLAAVD------------------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWN 585 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d------------------------------~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~Wn 585 (807)
|+|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 77999999999999988 35779999999999866 699999999999999
Q ss_pred EEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcC--ccCceEEEEEEE
Q 003624 586 EIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ--ACQSKLHLRIFL 657 (807)
Q Consensus 586 E~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~--~~~G~l~l~l~~ 657 (807)
|+|.|.+.. +.+.|.|.|||+|. ++ +++||++.+++.++..+...+.|++|.+..+. ...|+|||+++|
T Consensus 87 E~F~~~~~~-~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAH-YASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccC-CCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999997643 46789999999998 65 57999999999998888888999999864333 346899999887
No 33
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=3.9e-18 Score=159.19 Aligned_cols=116 Identities=20% Similarity=0.364 Sum_probs=100.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|.|+|++|+||+++|..|.+||||++.++++. .+|+++.+++||.|||.|.|.+.. ....|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCC-CCCCCEE
Confidence 89999999999999999999999999998875 799999999999999999998754 35789999999998 8999999
Q ss_pred eeEEEEceeccCC-CceeEEEeCCCcC-cCccCceEEEEEE
Q 003624 618 GHAEINFVKSDIS-DLADVWIPLQGKL-AQACQSKLHLRIF 656 (807)
Q Consensus 618 G~~~i~l~~l~~~-~~~~~w~~L~~k~-~~~~~G~l~l~l~ 656 (807)
|++.+++.++..+ ...+.|++|.+.. .....|+|++.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999998887643 3468999998642 2345789988865
No 34
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=6.6e-18 Score=160.78 Aligned_cols=122 Identities=25% Similarity=0.493 Sum_probs=104.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC----------CCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL----------KDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~----------~~~L~i~V~D~d 71 (807)
+|+|+|++|++|+.++..|.+||||++.+++++.+|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 7999999999999999999999999999999999999999999999999999986321 257999999999
Q ss_pred CCCCCceeEEEEe-ecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 72 KYFNDDFVGFLKI-PVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 72 ~~~~d~~iG~v~i-~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
..++|++||++.+ |+..+...+......+||+|.... ...|+|+|++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-----~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-----QSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-----CchhheeEEeEEEEe
Confidence 9889999999986 665554433445678999998543 478999999999753
No 35
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=6.9e-18 Score=156.27 Aligned_cols=113 Identities=34% Similarity=0.618 Sum_probs=101.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeEE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
|+|+|++|+||+..+.++.+||||++.+++++.+|++++++.||.|||+|.|.+.+. ...|.|+|||++.++++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999899999999999999999999999999999999999999654 6899999999999889999999
Q ss_pred EEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
+.++|.++... .....|++|.+. .|+|++.+.|.
T Consensus 82 ~~~~l~~l~~~---~~~~~w~~L~~~--------~G~~~~~~~~~ 115 (116)
T cd08376 82 CEIDLSALPRE---QTHSLELELEDG--------EGSLLLLLTLT 115 (116)
T ss_pred EEEeHHHCCCC---CceEEEEEccCC--------CcEEEEEEEec
Confidence 99999998643 346899999842 59999998874
No 36
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=7.1e-18 Score=158.63 Aligned_cols=120 Identities=23% Similarity=0.455 Sum_probs=104.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC--CeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG--RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~--~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|.|+|++|+||+. ..|.+||||+++++ .++.+|+++.++.||.|||.|.|.+......|.|+|||++..+++++||
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG 78 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG 78 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence 6799999999998 67899999999997 3678999999999999999999999766789999999999988899999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
++.+++.++...+ ....|++|.++... .....|+|++.+.|...
T Consensus 79 ~~~i~l~~l~~~~---~~~~~~~L~~~~~~-~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 79 LAIVPFDELRKNP---SGRQIFPLQGRPYE-GDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEeHHHhccCC---ceeEEEEecCCCCC-CCCcceEEEEEEEEecc
Confidence 9999999997533 35689999976442 34679999999999653
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=6.6e-18 Score=158.15 Aligned_cols=119 Identities=31% Similarity=0.561 Sum_probs=104.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG 80 (807)
+|+|+|++|++|+.++.++.+||||++.+++.+.+|++++++.||.|||+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 5899999999999999888999999999999999999999999999999999999654 578999999999988999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCC--CCCCcceEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKK--SKNKDCGEILLTI 123 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~--~~~~~~G~I~l~l 123 (807)
++.++|.++...+ ....||.|.+...+ ...+..|.|++.+
T Consensus 81 ~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999986432 35789999976543 2456789999876
No 38
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.77 E-value=3.7e-18 Score=158.61 Aligned_cols=115 Identities=32% Similarity=0.550 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCcee
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFV 79 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~-t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~i 79 (807)
+|.|+|++|+||+..+..+.+||||++.+++.+.+|+++.+ +.||.|||.|.|.+.. ....|.|+|||++..+ |++|
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~i 80 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLI 80 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccce
Confidence 69999999999999999999999999999999999998865 7999999999999965 4578999999999865 8999
Q ss_pred EEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 80 G~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
|++.+++.++...+ ....||+|...+ +..|+|+|+++|
T Consensus 81 G~~~~~l~~~~~~~---~~~~w~~L~~~~-----~~~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG---EFDDWYELTLKG-----RYAGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC---CCCCcEEeccCC-----cEeeEEEEEEEC
Confidence 99999999986532 357999998643 568999999986
No 39
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=2e-18 Score=161.23 Aligned_cols=102 Identities=28% Similarity=0.430 Sum_probs=91.1
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEc
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~ 607 (807)
.+.|+|+|++|+||++++ .|.+||||++.+. ..+++|+++++++||.|||+|.|++.+ .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 567999999999999999 9999999999986 235899999999999999999998622 2456899999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
|. ++++++||++.|+|.++..+...+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99 88999999999999999887778999998
No 40
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=8.2e-18 Score=156.48 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=102.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
|.|+|+|++|+||+..+..+.+||||++.+++...+|+++++++||.|||+|.|.+.. ....|.|+|||++. .+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCC-CCCCce
Confidence 5699999999999999999999999999999988999999999999999999998643 36789999999998 889999
Q ss_pred ceeEEEEceeccCCCceeEEEeCCCcCc-CccCceEEEEEEE
Q 003624 617 LGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~l~~ 657 (807)
||++.+++.++..+. ..|++|..+.. ....|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999986543 78999986543 3358999998876
No 41
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=4.6e-18 Score=161.46 Aligned_cols=118 Identities=23% Similarity=0.291 Sum_probs=100.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-------eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCC
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-------~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~ 610 (807)
+|+|+|++|+||+.+|..|.+||||++.+++. .++|+++++|+||.|||+|.|.+... ...|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCC-
Confidence 38999999999999999999999999998765 37899999999999999999987543 5689999999998
Q ss_pred CCCCccceeEEEEceeccCCCc------eeEEEeCCCcCc-CccCceEEEEEEE
Q 003624 611 FNEATSLGHAEINFVKSDISDL------ADVWIPLQGKLA-QACQSKLHLRIFL 657 (807)
Q Consensus 611 ~~~dd~lG~~~i~l~~l~~~~~------~~~w~~L~~k~~-~~~~G~l~l~l~~ 657 (807)
++++++||++.+++.++..+.. ...||+|+++.+ ....|+|+|++.|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8899999999999999775543 458999996432 3458999999876
No 42
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.3e-17 Score=155.13 Aligned_cols=117 Identities=34% Similarity=0.625 Sum_probs=104.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
+|.|+|++|+||+..+.++.+||||+++++....+|++++++.||.|||+|.|.+.+....|.|+|||++..+++++||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGK 81 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeE
Confidence 58999999999999999999999999999998999999999999999999999997777899999999998889999999
Q ss_pred EEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+.+++.++... ...||+|.++... .+..|+|+|++.+
T Consensus 82 ~~~~l~~~~~~-----~~~~~~l~~~~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 82 VAIPLLSIKNG-----ERKWYALKDKKLR--TRAKGSILLEMDV 118 (119)
T ss_pred EEEEHHHCCCC-----CceEEECcccCCC--CceeeEEEEEEEe
Confidence 99999998532 3689999876543 3579999999876
No 43
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=2.8e-18 Score=164.87 Aligned_cols=101 Identities=25% Similarity=0.404 Sum_probs=88.3
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeC--------------C-CCc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD--------------E-PPS 598 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~--------------~-~~~ 598 (807)
|+|+|++|+||++ .+|.+||||+|.+.+ .+++|+++++|+||+|||+|.|++.. + ...
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 578999999999876 45899999999999999999999841 1 235
Q ss_pred eEEEEEEEcCCCCCCCccceeEEEEceeccCC-CceeEEEeCCCc
Q 003624 599 MLDVEVYDFDGPFNEATSLGHAEINFVKSDIS-DLADVWIPLQGK 642 (807)
Q Consensus 599 ~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L~~k 642 (807)
.|.|.|||++. +++|++||++.|++..+..+ ...+.||+|..+
T Consensus 80 ~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 80 ELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 69999999998 78999999999999998876 567899999854
No 44
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1.2e-17 Score=158.78 Aligned_cols=117 Identities=35% Similarity=0.640 Sum_probs=100.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG 80 (807)
+|+|+|++|++|+..+..|.+||||++.++.+..+|++++++.||.|||+|.|.+.+. ...|.|+|||++.+++|++||
T Consensus 16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG 95 (136)
T cd08375 16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLG 95 (136)
T ss_pred EEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeE
Confidence 5899999999999999999999999999999999999999999999999999999654 478999999999988999999
Q ss_pred EEEeecccccccCCCCCc--cEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLP--TAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~--~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
++.+++.++......... ..|..|. ....|+|+|++++
T Consensus 96 ~~~i~l~~l~~~~~~~~~~~~~~~~~~-------~~~~g~i~l~~~~ 135 (136)
T cd08375 96 RTEIRVADILKETKESKGPITKRLLLH-------EVPTGEVVVKLDL 135 (136)
T ss_pred EEEEEHHHhccccccCCCcEEEEeccc-------cccceeEEEEEEe
Confidence 999999999763222222 3455553 3568999999987
No 45
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=3.9e-18 Score=155.06 Aligned_cols=101 Identities=27% Similarity=0.327 Sum_probs=90.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++++|.||+|||.|.|.+..+..+.|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 389999999999999989999999999999999999999999999999999999877657789999999874 7899
Q ss_pred eeEEEEceeccCC--CceeEEEeCCCc
Q 003624 618 GHAEINFVKSDIS--DLADVWIPLQGK 642 (807)
Q Consensus 618 G~~~i~l~~l~~~--~~~~~w~~L~~k 642 (807)
|++.++|.++... ...+.||+|.++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 9999999987654 356899999865
No 46
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=9.4e-18 Score=157.79 Aligned_cols=118 Identities=23% Similarity=0.467 Sum_probs=102.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe---eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~---~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
.|+|+|++|++|+..+..|.+||||++.+++. .++|+++.+++||.|||+|.|.+.......|.|+|||+|. ++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCCC
Confidence 58999999999999999999999999998643 4899999999999999999998876556789999999998 7889
Q ss_pred ccceeEEEEceeccC---CCceeEEEeCCCcCcCccCceEEEEEEEeecCC
Q 003624 615 TSLGHAEINFVKSDI---SDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 615 d~lG~~~i~l~~l~~---~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~~~ 662 (807)
++||++.+++..+.. +...+.|++|.+ +|++++++.+...++
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 999999999987432 445689999963 589999999986654
No 47
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.1e-17 Score=158.64 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=101.1
Q ss_pred eEEEEEEEEeEcCCCCCCC----------CCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEE
Q 003624 537 WLLTVALIKGDNLAAVDSS----------GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~----------g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~ 605 (807)
|.|+|+|++|++|++.|.. |.+||||++.++++. .+|+++++++||.|||+|+|.+. ....|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEEE
Confidence 6799999999999998863 689999999999877 79999999999999999999875 3578999999
Q ss_pred EcCCCCCCCccceeEEEEceeccC--CCceeEEEeCCCcCcCccCceEEEEEEEee
Q 003624 606 DFDGPFNEATSLGHAEINFVKSDI--SDLADVWIPLQGKLAQACQSKLHLRIFLNN 659 (807)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~l~~--~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~ 659 (807)
|++. ++++++||++.++|.++.. +...+.|++|+ .+|+|+|++.+..
T Consensus 82 d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred eCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEcc------CCcEEEEEEEEec
Confidence 9998 7889999999999999876 56679999996 3589999999874
No 48
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.76 E-value=8.6e-18 Score=186.71 Aligned_cols=118 Identities=30% Similarity=0.464 Sum_probs=105.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
.|+|+|.+|+|||+.+..|..||||.|.++.+ ..+|.++-+++.|.|.|+|.|.++..-..|.+.|||.| +++|+.||
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IG 84 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIG 84 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccccc
Confidence 48999999999999999999999999999875 59999999999999999999999888899999999999 89999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
.+.|.-.++.... ..+.|+.|.+-... ..++|+|+|++.+
T Consensus 85 Kvai~re~l~~~~---~~d~W~~L~~VD~d--sEVQG~v~l~l~~ 124 (800)
T KOG2059|consen 85 KVAIKREDLHMYP---GKDTWFSLQPVDPD--SEVQGKVHLELAL 124 (800)
T ss_pred eeeeeHHHHhhCC---CCccceeccccCCC--hhhceeEEEEEEe
Confidence 9999888885422 46899999987644 4688999998887
No 49
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5e-18 Score=163.10 Aligned_cols=118 Identities=36% Similarity=0.526 Sum_probs=96.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEe---------------CC-C
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---------------DL-K 60 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~---------------~~-~ 60 (807)
+|.|+|++|+||+. .+|.+||||+|.+.. ++++|++++++.||+|||+|.|.+. +. .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999998 568999999999965 6789999999999999999999994 11 2
Q ss_pred CEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCC--------CCCcceEEEEEE
Q 003624 61 DELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS--------KNKDCGEILLTI 123 (807)
Q Consensus 61 ~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~--------~~~~~G~I~l~l 123 (807)
..|.|.|||++.+++|+|||++.||+..+... ......||+|.++..++ +....|.|+|.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc--CCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999998653 12357899999876443 234457777654
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.76 E-value=2e-17 Score=155.52 Aligned_cols=120 Identities=20% Similarity=0.312 Sum_probs=106.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
-|+|+|++|++|+..+.+|.+||||++.+++++.+|++++++.||.|||.|.|.+.+....|.|+|||++.+ +|++||.
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~lG~ 82 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFLGQ 82 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCceEE
Confidence 378999999999999999999999999999999999999999999999999999977788999999999986 5899999
Q ss_pred EEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
+.+++..+. .....|++|..+..+.+++..|+|.+++.+.+
T Consensus 83 ~~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 83 ATLSADPND-----SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEecccCC-----CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 999998753 23568999986665666789999999998753
No 51
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=3.6e-18 Score=155.94 Aligned_cols=101 Identities=19% Similarity=0.331 Sum_probs=87.0
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d 608 (807)
..+.|+|+|++|+||+ . .|.+||||++.+.. .+++|+++++|+||+|||+|.|++..+ +...|.|.|||+|
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 3567999999999999 3 46799999999853 358999999999999999999998543 4557999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
+ ++++|+||++.+++.++..+...+.|..|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 99999999999999988777777888765
No 52
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=4.5e-18 Score=160.84 Aligned_cols=91 Identities=44% Similarity=0.749 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
-|+|+|++|.||...|..+++||||.+++++++.+|+++.+++||+|||+|.|.+.++...|.++|||+|.++.|||+|.
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~ 86 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGE 86 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccce
Confidence 48999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccccc
Q 003624 82 LKIPVSRVFDA 92 (807)
Q Consensus 82 v~i~L~~l~~~ 92 (807)
+.|||..+...
T Consensus 87 A~I~l~p~~~~ 97 (168)
T KOG1030|consen 87 ATIPLKPLLEA 97 (168)
T ss_pred eeeccHHHHHH
Confidence 99999999764
No 53
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=9.9e-18 Score=160.09 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=93.8
Q ss_pred CeEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC--Ce---eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEE-EcC
Q 003624 536 GWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY-DFD 608 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~-D~d 608 (807)
.+.|.|+|++|+||++.+ ..|.+||||++.+. ++ +++|+++++|+||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 467999999999999874 67899999999973 32 489999999999999999999987 55778999999 688
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCCcCc
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA 644 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~ 644 (807)
. ++++++||.+.|+|.++..+.....||+|..+..
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 8 8899999999999999987777899999987644
No 54
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.8e-17 Score=155.99 Aligned_cols=115 Identities=34% Similarity=0.598 Sum_probs=101.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCC--------
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~-------- 73 (807)
+|+|+|++|++|+..+..|.+||||++.+++...+|++++++.||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 699999999999999999999999999999999999999999999999999999966667999999999852
Q ss_pred ---CCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003624 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (807)
Q Consensus 74 ---~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (807)
..+++||++.+++.++.. ....||.|.++... ...+|+|+|++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~-----~~~~w~~L~~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG-----EMDVWYNLEKRTDK--SAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccC-----CCCeEEECccCCCC--CcEeEEEEEEC
Confidence 468999999999998732 24699999987643 46799999975
No 55
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.75 E-value=4e-17 Score=153.43 Aligned_cols=118 Identities=24% Similarity=0.440 Sum_probs=98.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEEcCCCCCCcee
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYFNDDFV 79 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~d~~~~d~~i 79 (807)
.|+|+|++|+||+.. +.+||||++.+++.+ .+|++. ++.||.|||+|.|.+.+.. ..+.|.|||++.+++|++|
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 589999999999875 478999999998754 688874 6899999999999874433 6899999999998999999
Q ss_pred EEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 80 GFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 80 G~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
|++.+||..+... .....||+|.+... ......|+|+|+++|..
T Consensus 81 G~v~i~l~~l~~~---~~~~~W~~L~~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNG---QETDEWYPLSSASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCC---CcccEeEEcccCCC-CCCCcCcEEEEEEEEEc
Confidence 9999999998652 24578999998653 23467899999999964
No 56
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=2.9e-17 Score=154.43 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=101.1
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
.++|+|+|++|++|++.|..|.+||||++.++++.++|+++++++||.|||.|.|.+.. ....|.|+|||++. + .|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC-CCCEEEEEEEECCC-C-CCC
Confidence 46899999999999999999999999999999999999999999999999999997654 47789999999998 5 489
Q ss_pred cceeEEEEceeccCCCceeEEEeCCC---cCcCccCceEEEEEEEe
Q 003624 616 SLGHAEINFVKSDISDLADVWIPLQG---KLAQACQSKLHLRIFLN 658 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~~~~~w~~L~~---k~~~~~~G~l~l~l~~~ 658 (807)
+||++.+++.+.. .....|++|.. +......|.|.|++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998754 34468889963 23445689999998764
No 57
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.4e-17 Score=153.49 Aligned_cols=101 Identities=30% Similarity=0.453 Sum_probs=89.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
+|.|+|++|++|+.++ ..||||.+++++++.+|+++++ .||.|||+|.|.+.+....|.|+|||++.+ .|++||+
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 7999999999998755 4689999999999999999988 599999999999988777899999999974 8999999
Q ss_pred EEeecccccccCCCCCccEEEEcccCC
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
+.|||.++...+ ..+.++||+|.+.-
T Consensus 78 v~i~L~~v~~~~-~~~~~~Wy~L~~~~ 103 (127)
T cd08394 78 VWIPLSTIRQSN-EEGPGEWLTLDSEV 103 (127)
T ss_pred EEEEhHHcccCC-CCCCCccEecChHH
Confidence 999999998753 45678999999754
No 58
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.8e-17 Score=153.36 Aligned_cols=118 Identities=30% Similarity=0.502 Sum_probs=102.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
|.|+|++|++|++++.+|.+||||++.+++.. .+|++++++.||.|||.|.|.+.+....|.|.|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 88999999999999999999999999998754 79999999999999999999997666899999999999899999999
Q ss_pred EEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEE
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTIS 124 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~ 124 (807)
+.+++..+... ......|++|.+..+. ....|+|+|.++
T Consensus 82 ~~~~~~~~~~~--~~~~~~W~~L~~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAH--PRGIDGWMNLTEVDPD--EEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccC--CCCCCcEEECeeeCCC--CccccEEEEEEE
Confidence 99999887532 1235789999875432 457899999875
No 59
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=2.3e-17 Score=157.02 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=99.5
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCC---------CCceEEEEEEEcC
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---------PPSMLDVEVYDFD 608 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~---------~~~~l~v~V~D~d 608 (807)
.|+|+|++|++|+++|..|.+||||++.+++++++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999999999999999999999999999999999999999975321 1357999999999
Q ss_pred CCCCCCccceeEEE-Eceecc---CCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 609 GPFNEATSLGHAEI-NFVKSD---ISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 609 ~~~~~dd~lG~~~i-~l~~l~---~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
. .++|++||++.+ ++..+. ......+|++|..+ ....|+|.+.+.+.
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~--~~~~Geil~~~~~~ 132 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG--GQSAGELLAAFELI 132 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC--CCchhheeEEeEEE
Confidence 9 889999999997 333333 34567899999744 23689999999886
No 60
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=2.1e-17 Score=154.76 Aligned_cols=119 Identities=24% Similarity=0.432 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCC--Cce
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-RQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN--DDF 78 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~--d~~ 78 (807)
.|+|+|++|++|+.++.++.+||||++.++ .+.++|++++++.||.|||+|.|.+.+ ...|.|+|||++.+++ |++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 489999999999999999999999999996 678999999999999999999999965 7899999999998765 589
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (807)
||++.+++.++..... ....||+|.+......+...|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD--TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC--CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975332 346799998776555567799999876
No 61
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2.5e-17 Score=155.12 Aligned_cols=115 Identities=24% Similarity=0.461 Sum_probs=97.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCC-------
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP------- 610 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~------- 610 (807)
.|+|+|++|++|+..|..|.+||||++.++++..+|+++.+++||.|||.|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 4899999999999999999999999999998889999999999999999999977543 56899999999851
Q ss_pred ---CCCCccceeEEEEceeccCCCceeEEEeCCCcCcC-ccCceEEEEE
Q 003624 611 ---FNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRI 655 (807)
Q Consensus 611 ---~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~l 655 (807)
.+.+++||++.+++.++. +..+.|++|.++++. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999998875 345899999976543 3488888764
No 62
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=1.6e-17 Score=155.09 Aligned_cols=99 Identities=31% Similarity=0.507 Sum_probs=87.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEE-eC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v-~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||+.++ .+.+||||++++. ..+++|++++++.||+|||+|.|.+ +. ....|.|+|||++.
T Consensus 14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~ 92 (122)
T cd08381 14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS 92 (122)
T ss_pred EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence 6899999999999999 8999999999996 3478999999999999999999997 21 35799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
++++++||++.|+|.++... .....||+|
T Consensus 93 ~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 93 LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 89999999999999998643 246789998
No 63
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=2.2e-17 Score=152.69 Aligned_cols=104 Identities=27% Similarity=0.426 Sum_probs=88.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-C----C--eEEEeeeccCCCCCeeecEEEEEEeCC----CCEEEEEEEEc
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL-G----R--QRFKTKVVRKSLSPSWEEEFSFKVEDL----KDELVISVLDE 70 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l-~----~--~~~kTkvi~~t~nP~WnE~f~f~v~~~----~~~L~i~V~D~ 70 (807)
+|+|+|++|+||+..+ .|.+||||+|++ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999988 489999999998 2 1 357899999999999999999999532 25799999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCC
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~ 109 (807)
|..+++++||++.+|+.++...+ ....|++|.++..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCccc
Confidence 98778999999999999997533 3678999987643
No 64
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=3.9e-17 Score=153.82 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=103.6
Q ss_pred EEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCCCCCCCccceeE
Q 003624 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEATSLGHA 620 (807)
Q Consensus 543 vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~~~~~dd~lG~~ 620 (807)
|++|+||+. ..|.+||||++.+++.+++|++++++.||+|||.|.|.+... ....|.|+|||++. .++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 689999999 688999999999999999999999999999999999988543 46789999999998 8889999999
Q ss_pred EEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEeecCC
Q 003624 621 EINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 621 ~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~~~ 662 (807)
.+++.++..+.....|++|....+....|+|++++.|....+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999986555555789999999875543
No 65
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.3e-17 Score=152.92 Aligned_cols=101 Identities=21% Similarity=0.464 Sum_probs=90.1
Q ss_pred EEEEEEEeEcCCCCCC-CCCCCcEEEEEECCeeEEeeccCCCCCCeE-eEEEEEEeeCC--CCceEEEEEEEcCCCCCCC
Q 003624 539 LTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMW-NEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~~~~~T~v~~~t~nP~W-nE~f~f~v~~~--~~~~l~v~V~D~d~~~~~d 614 (807)
|+|+|++|+||++++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+... ....|.|+|||+|. ++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 6899999999999984 789999999999998899999999999999 99999987553 24689999999999 8899
Q ss_pred ccceeEEEEceeccC---CCceeEEEeCC
Q 003624 615 TSLGHAEINFVKSDI---SDLADVWIPLQ 640 (807)
Q Consensus 615 d~lG~~~i~l~~l~~---~~~~~~w~~L~ 640 (807)
++||++.+++.++.. +...+.||+|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999766 44568899995
No 66
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=1.7e-17 Score=155.61 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=91.8
Q ss_pred CCeEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDS-SGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D 606 (807)
..+.|.|+|++|+||++.|. .|.+||||++.+. ..+++|+++++++||+|||+|.|++..+ ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45779999999999999875 5899999999974 2248999999999999999999987542 34579999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
+|. ++++++||++.|++..+...+..+.|++|.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 899999999999999998888889999983
No 67
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.73 E-value=7.6e-17 Score=157.33 Aligned_cols=119 Identities=29% Similarity=0.497 Sum_probs=101.7
Q ss_pred EEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeeccCCCCCeeec
Q 003624 2 KLVVRVIEARNIPAMD------------------------------QNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEE 50 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d------------------------------~~g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE 50 (807)
+|.|+|++|++|+.+| ..|.+||||++++++.+ .+|++++++.||.|||
T Consensus 8 ~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE 87 (158)
T cd04015 8 TLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNE 87 (158)
T ss_pred eeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccce
Confidence 5889999999999987 34678999999998765 6999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 51 EFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 51 ~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+|.|.+......|.|.|||+|.+ ++++||++.+|+.++... .....||+|.+..++. .+..|+|+|+++|
T Consensus 88 ~F~~~~~~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~~~~~-~~~~~~l~v~~~f 157 (158)
T cd04015 88 SFHIYCAHYASHVEFTVKDNDVV-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDSNGKP-PKPGAKIRVSLQF 157 (158)
T ss_pred EEEEEccCCCCEEEEEEEeCCCc-CCcEEEEEEEEhHHccCC---CCcceEEECcCCCCCC-CCCCCEEEEEEEE
Confidence 99999977778999999999986 468999999999998642 3467999998765443 3557999999988
No 68
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=4.4e-17 Score=151.63 Aligned_cols=113 Identities=32% Similarity=0.480 Sum_probs=98.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCce
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~ 78 (807)
|.|+|++|++|+..+..+.+||||++.++ ..+.+|++++++.||+|||+|.|.+... ...|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999999988999999999996 3578999999999999999999999543 46799999999998 8999
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
||++.+++.++..+ .....|++|.+. ..|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~g---~~~~~~~~L~~~-------~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLG---EKVRVTFSLNPQ-------GKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCC---CcEEEEEECCCC-------CCceEEEEEEee
Confidence 99999999998642 346789999853 379999988873
No 69
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=2.5e-17 Score=154.85 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=91.0
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||++++.. |.+||||++++.+ .+++|++++++.||+|||+|.|.+... ...|.+.|||.+.
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 689999999999999875 8999999999952 368999999999999999999999542 4799999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
++++++||++.|+|.++...+.......||+|.
T Consensus 96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 899999999999999996554455678999983
No 70
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=3.9e-17 Score=156.00 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=90.4
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEE-EcCCCC
Q 003624 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~-D~d~~~ 74 (807)
+|.|+|++|+||++.+ ..|.+||||++++.. .+++|+++++++||+|||+|.|.+......|.|+|| |++.+.
T Consensus 30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~ 109 (146)
T cd04028 30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD 109 (146)
T ss_pred EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence 6899999999999874 578899999999943 378999999999999999999999866789999999 688888
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++++||++.|+|+++... .....||+|.+..
T Consensus 110 ~~~~iG~~~i~L~~l~~~---~~~~~Wy~L~~~~ 140 (146)
T cd04028 110 KKVFMGVAQILLDDLDLS---NLVIGWYKLFPTS 140 (146)
T ss_pred CCceEEEEEEEcccccCC---CCceeEEecCCcc
Confidence 899999999999998432 2357899999765
No 71
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.72 E-value=2e-17 Score=155.25 Aligned_cols=104 Identities=31% Similarity=0.479 Sum_probs=91.1
Q ss_pred CeEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 536 GWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
.+.|+|+|++|+||+++|.. |.+||||++.+. ..+++|+++++++||+|||+|.|++... ....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 46799999999999999975 899999999973 2238999999999999999999987532 345899999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
|. ++++++||++.|+|.++...+....|++|.
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 899999999999999988777788999984
No 72
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=3e-17 Score=149.65 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=82.9
Q ss_pred eEEEEEEEEeEcCCCCCCC----CCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCC-CCceEEEEEEEcCCCC
Q 003624 537 WLLTVALIKGDNLAAVDSS----GFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFDGPF 611 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~----g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~-~~~~l~v~V~D~d~~~ 611 (807)
|+|.|+|++|+||++.|.. +.+||||+|.++++.++|+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6799999999999998742 3589999999999999999999999999999999988553 34579999999999 8
Q ss_pred CCCccceeEEEEceeccCCC
Q 003624 612 NEATSLGHAEINFVKSDISD 631 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~ 631 (807)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999976543
No 73
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.72 E-value=1.8e-17 Score=152.24 Aligned_cols=100 Identities=22% Similarity=0.375 Sum_probs=87.8
Q ss_pred eEEEEEEEEeEcCCCCCCC-CCCCcEEEEEECC---eeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEEcCC
Q 003624 537 WLLTVALIKGDNLAAVDSS-GFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDG 609 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D~d~ 609 (807)
|+|+|+|++|+||++.|.. |.+||||++.+.+ ..++|+++++++||+|||.|.|.+..+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999988 9999999999843 348999999999999999999977543 45689999999999
Q ss_pred CCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 610 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
+++|++||++.+++.++.. ...|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 8899999999999999863 47798885
No 74
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=3.4e-17 Score=153.59 Aligned_cols=105 Identities=31% Similarity=0.559 Sum_probs=93.5
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~ 609 (807)
..+.|+|+|++|+||+++|..|.+||||++.+. .+.++|+++++++||.|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 457899999999999999999999999999983 3348999999999999999999987543 24589999999998
Q ss_pred CCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 610 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
++++++||++.+++.++..++..+.|++|.
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 889999999999999998778889999995
No 75
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=4.8e-17 Score=149.14 Aligned_cols=104 Identities=37% Similarity=0.684 Sum_probs=92.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeeccCCCCCee-ecEEEEEEeCC---CCEEEEEEEEcCCCCCCc
Q 003624 3 LVVRVIEARNIPAMDQ-NGYSDPYVRLQLGRQRFKTKVVRKSLSPSW-EEEFSFKVEDL---KDELVISVLDEDKYFNDD 77 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~-~g~~DPyv~v~l~~~~~kTkvi~~t~nP~W-nE~f~f~v~~~---~~~L~i~V~D~d~~~~d~ 77 (807)
|.|+|++|+||+.++. .|.+||||++.+++++.+|+++++++||.| ||+|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 688999999999999999999999999999 99999999542 478999999999988999
Q ss_pred eeEEEEeecccccccCCCCCccEEEEccc
Q 003624 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 78 ~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+||++.+++.++...+.......||+|..
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999986433445789999974
No 76
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.72 E-value=3.7e-17 Score=149.25 Aligned_cols=97 Identities=23% Similarity=0.388 Sum_probs=82.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~----~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~ 74 (807)
+|.|+|++|+||+ ..|.+||||++.+.. .+++|+++++|+||+|||+|.|.++. ....|.++|||+|.++
T Consensus 15 ~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs 91 (118)
T cd08677 15 ELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFS 91 (118)
T ss_pred EEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCC
Confidence 7999999999998 346799999999963 57899999999999999999999953 2478999999999999
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
++++||++.+++.++... .....|..|
T Consensus 92 ~~d~IG~v~l~l~~~~~~---~~~~~W~~~ 118 (118)
T cd08677 92 RHSTLGELRLKLADVSMM---LGAAQWVDL 118 (118)
T ss_pred CCceEEEEEEccccccCC---ccccchhcC
Confidence 999999999999987321 134567654
No 77
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.72 E-value=4.5e-17 Score=152.72 Aligned_cols=105 Identities=27% Similarity=0.490 Sum_probs=92.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~ 609 (807)
..+.|+|+|++|+||++.|..|.+||||++.+.+ +.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 4567999999999999999999999999999742 348999999999999999999987542 24589999999998
Q ss_pred CCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 610 PFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 610 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
++++++||++.+++.++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 889999999999999988888889999996
No 78
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=6.6e-17 Score=149.45 Aligned_cols=113 Identities=31% Similarity=0.516 Sum_probs=99.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|+|+|++|++|+..+..|.+||||++.+++.. ++|+++.++.||.|||+|.|.+.....+.|.|+|||++. .+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 58999999999999988999999999997655 899999999999999999998876567889999999998 7899999
Q ss_pred eeEEEEceeccCCCceeEEEeCCCcCcCccCceEEE
Q 003624 618 GHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHL 653 (807)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l 653 (807)
|++.+++.++..+...+.|++|.++ ++...|.|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~-g~~~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQ-GGGKLGAVFL 114 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCC-CCccCceEEc
Confidence 9999999998888888999999876 3345666654
No 79
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=5.7e-17 Score=147.36 Aligned_cols=101 Identities=30% Similarity=0.490 Sum_probs=90.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeEE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
|.|+|++|+||+..+..+.+||||++++++++++|+++.++.||.|||.|.|.+.+. ...|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 789999999999998889999999999999999999999999999999999999764 5789999999986 789999
Q ss_pred EEeecccccccCCCCCccEEEEcccC
Q 003624 82 LKIPVSRVFDADNKSLPTAWHSLQPK 107 (807)
Q Consensus 82 v~i~L~~l~~~~~~~~~~~w~~L~~~ 107 (807)
+.++|.++...+ +...+.||+|.++
T Consensus 79 ~~i~l~~l~~~~-~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP-DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc-cceeeeeEecCCC
Confidence 999999997643 3346899999865
No 80
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.71 E-value=7.6e-18 Score=193.40 Aligned_cols=358 Identities=28% Similarity=0.357 Sum_probs=316.5
Q ss_pred CCccceeeecccceeEeehhHHHHHhhhhhhhccCCCcccceecCCCCcchhhhhhhhhhhhhccchhHHHHHHHHHhhh
Q 003624 443 QSDWKLAVHYFANFTVVSSFFMGIYVLIHIWLATSTTIQGLEFVGLDLPDSIGEFIVCGVLVLQGERFLQLISRFMQARK 522 (807)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~gl~~~~~~~~d~~~~~~~~~~lvl~~~~~~~~~~~~~~a~~ 522 (807)
..+|+....++....++......+++.++...+.+...+|..+.++++|+..+...-...++....+......++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~ 82 (590)
T KOG1032|consen 3 HMQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKL 82 (590)
T ss_pred cccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCcccccccccccccccccccccc
Confidence 34566677778888888888888999999999999999999999999999999998888777777777777777778887
Q ss_pred hcCCCCcccccCCCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEE
Q 003624 523 QKGSDHGVKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (807)
Q Consensus 523 ~~~~d~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v 602 (807)
.++..++.+...+++......+.+.++.....++.++||..+.+.+..+...+..++.+|.|++.++|....-+-....|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~v 162 (590)
T KOG1032|consen 83 HKGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVV 162 (590)
T ss_pred CCCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeE
Confidence 78888899999999999999999999998888889999999999999999999999999999999999776655677888
Q ss_pred EEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEeecCCCchhhhhhhhhhhhcccc--
Q 003624 603 EVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKGSNVVKEYLTKMEKEVGKK-- 680 (807)
Q Consensus 603 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~~~~~~~~~~l~~~e~~vg~k-- 680 (807)
..++++..+.+..-.|.+...+.-- .....+.|..|.++++..+..+++++-.+..+..+.....|+...+++++.+
T Consensus 163 Ipf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~ 241 (590)
T KOG1032|consen 163 IPFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQ 241 (590)
T ss_pred EeeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccc
Confidence 8999887667776777776665544 5667799999999988877778999999999998899999999999999876
Q ss_pred ccccCCCcccccccccCCCccccccceEEEEEeeccccceeEEeecCeeeeecCCCCceeEEEEecccceeeEecCCCcc
Q 003624 681 INLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 760 (807)
Q Consensus 681 ~~~~s~~~n~~f~~~F~lp~~e~l~~~~~c~l~~~~~~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~~ 760 (807)
......+.++.++..|++|.+|.+..+|+|++.+..+++|+++++....||++.+||..+++..+|++++.++..+....
T Consensus 242 ~~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~ 321 (590)
T KOG1032|consen 242 GNVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWK 321 (590)
T ss_pred cccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeecccccccccccccccc
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCceEEEEeecccccccCCCceEeecCCceEEEEeeecc
Q 003624 761 SMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVS 801 (807)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~ 801 (807)
..+++.....+..+.++.+..+.+.+..++...++|..+..
T Consensus 322 ~~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~ 362 (590)
T KOG1032|consen 322 GPRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEK 362 (590)
T ss_pred CCCccceeEeccCCccCCCcCCCccccccceeeEEeccchh
Confidence 77777788889999999999999999888999999998876
No 81
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=5.4e-17 Score=151.94 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=94.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC-CeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCC--Cc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN-GKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE--AT 615 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~--dd 615 (807)
|+|+|++|+||+.++..|.+||||++.++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 89999999999999999999999999997 556999999999999999999998754 6799999999998 664 57
Q ss_pred cceeEEEEceeccCCC-ceeEEEeCCCcCc---CccCceEEEEE
Q 003624 616 SLGHAEINFVKSDISD-LADVWIPLQGKLA---QACQSKLHLRI 655 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~-~~~~w~~L~~k~~---~~~~G~l~l~l 655 (807)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999975443 4478999965432 22366666654
No 82
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.2e-16 Score=149.63 Aligned_cols=118 Identities=21% Similarity=0.300 Sum_probs=99.7
Q ss_pred eEEEEEEEEeEcCCCCCC-CCCCCcEEEEEECC--eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNG--KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~--~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~ 613 (807)
|.|+|+|++|+||+..+. .|.+||||++.+++ +.++|+++.+++||.|||.|.|.+. ...+.|.|+|||++. .++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 679999999999997663 56799999999988 6699999999999999999999876 457799999999998 789
Q ss_pred CccceeEEEEceeccCCCcee-EEEeCCCcCcCccCceEEEEEEEe
Q 003624 614 ATSLGHAEINFVKSDISDLAD-VWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 614 dd~lG~~~i~l~~l~~~~~~~-~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
|++||++.+++.++..+...+ .|.+|.. +....|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeC
Confidence 999999999999987766654 4556643 333579999999874
No 83
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=7.7e-17 Score=151.27 Aligned_cols=104 Identities=27% Similarity=0.447 Sum_probs=88.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D 606 (807)
..+.|+|+|++|+||+..+..+.+||||++.+.+ .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3467999999999999999999999999999864 458999999999999999999975432 35689999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
+|. ++.+++||++.+++.+.. ......||+|+
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 998 889999999999999832 33457899985
No 84
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.70 E-value=7.7e-17 Score=151.25 Aligned_cols=101 Identities=32% Similarity=0.472 Sum_probs=88.1
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||++++.. |.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999976 899999999994 235899999999999999999999853 24689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
++++++||++.|+|.++... .....||+|+
T Consensus 96 ~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 96 LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 89999999999999998543 2457899985
No 85
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=8.1e-17 Score=151.42 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D 606 (807)
..+.|.|+|++|+||+++|.. |.+||||++.+. ..+++|+++++++||+|||+|.|++..+ ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 346799999999999999875 999999999974 2257999999999999999999987543 34689999999
Q ss_pred cCCCCCCCccceeEEEEceeccCC---CceeEEEeCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDIS---DLADVWIPLQ 640 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~ 640 (807)
++. ++++++||++.|+|.++... .....||+|.
T Consensus 93 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 93 SRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 998 88999999999999997553 3557899983
No 86
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.3e-16 Score=147.09 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=84.5
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
+.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||.|.|.+.. ....|.|+|||+|. + .||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~-~-~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGL-I-WDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCC-c-CCCc
Confidence 46999999999998755 4699999999999999999977 599999999998754 45669999999997 4 8999
Q ss_pred ceeEEEEceeccCCCce--eEEEeCCC
Q 003624 617 LGHAEINFVKSDISDLA--DVWIPLQG 641 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~--~~w~~L~~ 641 (807)
||++.|+|.++..+... .+||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999997755444 89999985
No 87
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.70 E-value=2e-16 Score=147.48 Aligned_cols=113 Identities=36% Similarity=0.661 Sum_probs=98.5
Q ss_pred EEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQ------NGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~------~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~ 74 (807)
.|+|+|++|+||+..+. .|.+||||++.++++..+|++++++.||.|||+|.|.+.+ ....|.|+|||++..
T Consensus 2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~- 80 (121)
T cd08391 2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD- 80 (121)
T ss_pred eEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-
Confidence 48999999999998875 3689999999999999999999999999999999999954 468999999999987
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
++++||++.+++.++...+ ....||+|.+. ..|+|+|.+++
T Consensus 81 ~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~-------~~G~~~~~~~~ 121 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG---FIDEWLPLEDV-------KSGRLHLKLEW 121 (121)
T ss_pred CCCcEEEEEEEHHHhcccC---ccceEEECcCC-------CCceEEEEEeC
Confidence 8999999999999987532 46799999853 47999998763
No 88
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=6.2e-17 Score=150.35 Aligned_cols=103 Identities=19% Similarity=0.307 Sum_probs=88.4
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCC-CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~-~~~~l~v~V~D~d 608 (807)
..+.|.|+|++|+||++++ .|.+||||++.+.. .+++|+++++++||.|||+|.|++... ....|.|+|||+|
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4567999999999999999 88999999999753 247999999999999999999987442 2356899999999
Q ss_pred CCCC-CCccceeEEEEceeccCCCceeEEEeC
Q 003624 609 GPFN-EATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 609 ~~~~-~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
. .. .+++||.+.|++.++..+...+.||.|
T Consensus 89 ~-~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 S-KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 8 55 478999999999998877778999987
No 89
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.1e-16 Score=154.24 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=88.8
Q ss_pred EEEEEEEeEcCCCCCCCC--------------CCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEee-CCCCceEEEE
Q 003624 539 LTVALIKGDNLAAVDSSG--------------FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAM-DEPPSMLDVE 603 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g--------------~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~-~~~~~~l~v~ 603 (807)
|.|+|++|++|+++|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. +.....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 6899999999999999999999999999999999874 3445689999
Q ss_pred EEEcCCCCCCCccceeEEEEceeccCCCc-------eeEEEeCCCc
Q 003624 604 VYDFDGPFNEATSLGHAEINFVKSDISDL-------ADVWIPLQGK 642 (807)
Q Consensus 604 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~-------~~~w~~L~~k 642 (807)
|||+|. .++||+||++.+++.++...+. ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999 8899999999999998765432 3567777654
No 90
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=1.6e-16 Score=149.22 Aligned_cols=105 Identities=26% Similarity=0.494 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEE---CCeeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC---NGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~---~~~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D~d 608 (807)
..+.|+|+|++|+||+..|..|.+||||++.+ +++.++|+++++++||.|||+|.|.+... ....|.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 45679999999999999999999999999998 34558999999999999999999975321 2457999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
. ++++++||++.+++.++..+...+.|++|.
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred C-CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 8 889999999999999998888889999985
No 91
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=1.7e-16 Score=152.86 Aligned_cols=107 Identities=26% Similarity=0.499 Sum_probs=92.8
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEe--CCCCEEEE
Q 003624 2 KLVVRVIEARNIPAMDQNG--------------YSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVI 65 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g--------------~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~i 65 (807)
+|.|+|++|++||.++..+ .+||||+|.+++++.+|++++++.||+|||+|.|.+. .....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999988553 6899999999999999999999999999999999973 34679999
Q ss_pred EEEEcCCCCCCceeEEEEeecccccccCCC----CCccEEEEcccCC
Q 003624 66 SVLDEDKYFNDDFVGFLKIPVSRVFDADNK----SLPTAWHSLQPKN 108 (807)
Q Consensus 66 ~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~----~~~~~w~~L~~~~ 108 (807)
+|||+|..++|++||++.+++.++...+.. ..++.|+.|+...
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 999999988999999999999998764321 2468999998654
No 92
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.69 E-value=5.8e-16 Score=145.61 Aligned_cols=118 Identities=27% Similarity=0.420 Sum_probs=101.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCc
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDD 77 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~ 77 (807)
.|.|+|++|++|+..+.++.+||||++.+++ ...+|++++++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999999999999999864 35899999999999999999999965 3578999999999988899
Q ss_pred eeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 78 ~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
+||++.++|..+...+++.....|++|.+ .|+|+|.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~---------~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT---------QGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC---------CCeEEEEEEEeee
Confidence 99999999998754332345678999973 5899999998653
No 93
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.69 E-value=1.8e-16 Score=149.29 Aligned_cols=105 Identities=31% Similarity=0.428 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|+||+..+..+.+||||++.+. ..+++|+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 457799999999999999998999999999985 3458999999999999999999987442 346899999999
Q ss_pred CCCC--CCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 608 DGPF--NEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 608 d~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
+. + +++++||++.+++.++..+...+.||+|.
T Consensus 94 ~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 94 KS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred Cc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 87 5 68899999999999998888889999984
No 94
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=5e-16 Score=146.25 Aligned_cols=114 Identities=22% Similarity=0.397 Sum_probs=99.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCCCCceeEEEE
Q 003624 7 VIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFNDDFVGFLK 83 (807)
Q Consensus 7 Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~d~~iG~v~ 83 (807)
|++|+||+. ..|.+||||++++++.+.+|++++++.||+|||+|.|.+.. ....|.|+|||++.++++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 67899999999999999999999999999999999999954 3689999999999988999999999
Q ss_pred eecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 84 IPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 84 i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
+++.++... .....|++|.+..++ ...|+|++.++|.+.
T Consensus 80 ~~l~~l~~~---~~~~~~~~L~~~~~~---~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSE---GLLEVTEPLLDSNGR---PTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccC---CceEEEEeCcCCCCC---cccEEEEEEEEEeCC
Confidence 999999753 246789999865542 457999999999865
No 95
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=2.3e-16 Score=147.90 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~-~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||++.+. .|.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|+|||++.
T Consensus 16 ~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 16 SLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred eEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 68999999999998865 5789999999994 235899999999999999999999954 24689999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
++++++||++.|+|.++... .....||+|.
T Consensus 96 ~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 96 FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99999999999999999643 2468999984
No 96
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.69 E-value=2.5e-17 Score=173.44 Aligned_cols=123 Identities=24% Similarity=0.414 Sum_probs=105.0
Q ss_pred HHHhhhhcCCCCc-------ccccCCCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeE
Q 003624 517 FMQARKQKGSDHG-------VKAQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMW 584 (807)
Q Consensus 517 ~~~a~~~~~~d~~-------~~~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~W 584 (807)
......++|.||. +.++..+..|+|+|.+|+||.++|.+|.|||||.+.+- ..+++|++++.++||+|
T Consensus 153 v~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 153 VENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred hhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 3466778888873 34556778899999999999999999999999999973 22389999999999999
Q ss_pred eEEEEEEee-CCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCC
Q 003624 585 NEIFEYDAM-DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (807)
Q Consensus 585 nE~f~f~v~-~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 641 (807)
||+|.|.+. .+...+|.|+|||||+ -+++||+|...+.++++.. .+.+.||.|..
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K-~p~~GWyKlLs 288 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQK-APVDGWYKLLS 288 (683)
T ss_pred cceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhh-cchhhHHHHhh
Confidence 999999884 4567789999999999 8999999999999999875 45799999963
No 97
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=2.7e-16 Score=148.13 Aligned_cols=105 Identities=21% Similarity=0.310 Sum_probs=88.4
Q ss_pred CCeEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEC---CeeEEeeccCCCCCCeEeEEEEEE-eeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSS-GFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~-g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~-v~~~--~~~~l~v~V~D~ 607 (807)
....|+|+|++|+||++.+.. |.+||||++.+. +++++|+++++++||+|||+|.|. +... ....|.++|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 456799999999999999876 899999999974 334799999999999999999993 3221 234699999999
Q ss_pred CCCCCCCccceeEEEEceeccCC--CceeEEEeCC
Q 003624 608 DGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQ 640 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~ 640 (807)
|. +++|++||++.|+|.++... +....|.+|+
T Consensus 94 d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 94 DR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CC-CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99 89999999999999997554 5567899885
No 98
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=2.1e-16 Score=145.22 Aligned_cols=100 Identities=22% Similarity=0.420 Sum_probs=87.5
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCC----CceEEEEEEEcCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPFN 612 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~----~~~l~v~V~D~d~~~~ 612 (807)
+.|+|+|++|+||+ .|.+||||++++++++++|+++++++||.|||+|.|.+..+. ...|.|+|||++. ++
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~~ 78 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-LR 78 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-cc
Confidence 67999999999998 578999999999999999999999999999999999874432 3579999999998 88
Q ss_pred CCccceeEEEEceeccCC---CceeEEEeCCC
Q 003624 613 EATSLGHAEINFVKSDIS---DLADVWIPLQG 641 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~~---~~~~~w~~L~~ 641 (807)
+|++||++.+++.++..+ .....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 899999999999997655 33578999963
No 99
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=1.2e-16 Score=150.05 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=97.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eeEEeeccC-CCCCCeEeEEEEEEeeCCC----CceEEEEEEEcCCCCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKF-QQCDPMWNEIFEYDAMDEP----PSMLDVEVYDFDGPFN 612 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-~~~~T~v~~-~t~nP~WnE~f~f~v~~~~----~~~l~v~V~D~d~~~~ 612 (807)
|+|+|++|++|+..+..+.+||||++++++ ++++|++.. ++.||.|||.|.|.+.... ...|.|+|||++. ++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~~ 80 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-SL 80 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-CC
Confidence 899999999999999899999999999988 778888874 6899999999999886542 5789999999998 78
Q ss_pred CCccceeEEEEceeccCCCc-----eeEEEeCCCcCcCccCceEEE
Q 003624 613 EATSLGHAEINFVKSDISDL-----ADVWIPLQGKLAQACQSKLHL 653 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~~~~-----~~~w~~L~~k~~~~~~G~l~l 653 (807)
+|++||++.+++.++..+.. ...||+|..+. ...+|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-GKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-CCcCeEEeC
Confidence 99999999999999775554 37899998754 456777764
No 100
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.68 E-value=4.4e-16 Score=145.82 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC--eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCce
Q 003624 2 KLVVRVIEARNIPAMDQ-NGYSDPYVRLQLGR--QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~-~g~~DPyv~v~l~~--~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~ 78 (807)
.|.|+|++|+||+..+. .+.+||||++.+++ ...+|+++.++.||.|||.|.|.+.+....|.|+|||++..++|++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~ 82 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKL 82 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCce
Confidence 58999999999997653 46799999999987 7899999999999999999999998668899999999998889999
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
||++.+++.++..... ....|+.|.. . .+..|+|+++++|.|
T Consensus 83 iG~~~~~l~~l~~~~~--~~~~~~~~~~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 83 IGTAEFDLSSLLQNPE--QENLTKNLLR-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEHHHhccCcc--ccCcchhhhc-C----CccceEEEEEEEeCC
Confidence 9999999999975332 2223555543 2 356899999999953
No 101
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=1e-15 Score=145.14 Aligned_cols=115 Identities=26% Similarity=0.434 Sum_probs=99.7
Q ss_pred EEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEc
Q 003624 2 KLVVRVIEARNIPAMDQN----------GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE 70 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~----------g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~ 70 (807)
.|+|+|++|+||+..+.. |.+||||++.+++++ .+|++++++.||.|||+|.|.+. ....|.|.|||+
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d~ 83 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFHD 83 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEeC
Confidence 589999999999988863 679999999998765 69999999999999999999996 457999999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
+.+..+++||++.++|.++... .+.....|++|.+ .|+|+|+++|..
T Consensus 84 ~~~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~~---------~G~l~l~~~~~~ 130 (132)
T cd04014 84 AAIGPDDFVANCTISFEDLIQR-GSGSFDLWVDLEP---------QGKLHVKIELKG 130 (132)
T ss_pred CCCCCCceEEEEEEEhHHhccc-CCCcccEEEEccC---------CcEEEEEEEEec
Confidence 9888899999999999998763 1234689999972 599999999864
No 102
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=2.4e-16 Score=147.99 Aligned_cols=116 Identities=21% Similarity=0.374 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeecc-CCCCCeeecEEEEEEeCC-----CCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVR-KSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkvi~-~t~nP~WnE~f~f~v~~~-----~~~L~i~V~D~d~~~ 74 (807)
+|+|+|++|++|+..+..+.+||||++.+++ ++.+|+++. ++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999986 589999999999999655 589999999999888
Q ss_pred CCceeEEEEeecccccccCCC--CCccEEEEcccCCCCCCCCcceEEEE
Q 003624 75 NDDFVGFLKIPVSRVFDADNK--SLPTAWHSLQPKNKKSKNKDCGEILL 121 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~--~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (807)
++++||++.+++.++...... .....||.|....+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g----~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG----KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC----CcCeEEeC
Confidence 899999999999999864322 13578999997653 56788864
No 103
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.68 E-value=2.5e-16 Score=146.24 Aligned_cols=100 Identities=26% Similarity=0.493 Sum_probs=85.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC--CCCEEEEEEEEcCCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~ 73 (807)
.+|.|+|++|+||++++ .|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||++..
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 37999999999999998 78999999999963 36799999999999999999999843 346799999999986
Q ss_pred C-CCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 74 F-NDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 74 ~-~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
. ++++||++.||+.++... ....+||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 5 478999999999999642 235799986
No 104
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.67 E-value=2.9e-16 Score=147.28 Aligned_cols=105 Identities=26% Similarity=0.356 Sum_probs=94.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCC-CCCCeEeEEEEEEeeCC---CCceEEEEEEEcCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQ-QCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPFN 612 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~-t~nP~WnE~f~f~v~~~---~~~~l~v~V~D~d~~~~ 612 (807)
|.|+|+|++|+||+..+..+.+||||++.++++.++|++..+ +.||.|||.|.|.+... ....|.|+|||++. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 469999999999999998999999999999998888888874 99999999999988654 25689999999998 88
Q ss_pred CCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 613 EATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
+|++||++.+++.++..++..+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999998877788999999864
No 105
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=3.5e-16 Score=143.73 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=90.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-----CCEEEEEEEEcCCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-----KDELVISVLDEDKYFND 76 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-----~~~L~i~V~D~d~~~~d 76 (807)
.|+|+|++|+||+ .|.+||||++.+++++++|++++++.||.|||+|.|.+... ...|.|+|||++.++++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~ 80 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD 80 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence 5899999999998 57899999999999999999999999999999999998432 36899999999998889
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++||++.++|+++.....+.....|++|..
T Consensus 81 ~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 81 TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999987666667789999963
No 106
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.67 E-value=2.8e-16 Score=146.99 Aligned_cols=104 Identities=28% Similarity=0.429 Sum_probs=90.8
Q ss_pred CCeEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC-C----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN-G----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~-~----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D 606 (807)
..+.|+|+|++|+||+..+ ..|.+||||++.+. + .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 4577999999999999998 78899999999973 1 348999999999999999999987542 24589999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
+|. ++++++||++.+++.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 88999999999999999777777999997
No 107
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.67 E-value=4.7e-16 Score=145.55 Aligned_cols=105 Identities=29% Similarity=0.446 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEC---CeeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVD-SSGFCDPYVVFTCN---GKSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d-~~g~sDPYv~v~~~---~~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d 608 (807)
..+.|+|+|++|+||++++ ..|.+||||++.+. .+.++|+++++++||+|||.|.|++... ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 4567999999999999998 68899999999973 3448899999999999999999987543 2357999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
. .+.+++||++.++|.++......+.|++|+
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 8 788999999999999998888889999996
No 108
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=4.3e-16 Score=146.21 Aligned_cols=101 Identities=31% Similarity=0.572 Sum_probs=87.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC----CCCEEEEEEEEcC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDED 71 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d 71 (807)
++|.|+|++|+||+..+.++.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~ 95 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD 95 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence 47999999999999999889999999999964 57899999999999999999998633 3578999999999
Q ss_pred CCCCCceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 72 ~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
.++++++||++.++|.+... + ....||+|+
T Consensus 96 ~~~~~~~iG~~~i~l~~~~~-~---~~~~W~~L~ 125 (125)
T cd04031 96 RDGENDFLGEVVIDLADALL-D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCcEeeEEEEecccccc-c---CCcceEECc
Confidence 98899999999999998432 2 246899985
No 109
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=9.6e-16 Score=147.54 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=96.5
Q ss_pred EEEEEEeEc--CCCCCCCCCCCcEEEEEE--C---CeeEEeeccCCCCCCeEeEEEEEEeeCCC--------CceEEEEE
Q 003624 540 TVALIKGDN--LAAVDSSGFCDPYVVFTC--N---GKSRTSSIKFQQCDPMWNEIFEYDAMDEP--------PSMLDVEV 604 (807)
Q Consensus 540 ~V~vi~a~~--L~~~d~~g~sDPYv~v~~--~---~~~~~T~v~~~t~nP~WnE~f~f~v~~~~--------~~~l~v~V 604 (807)
.++|..|++ |++.+..|.+||||++.+ + .++.+|+++++|+||+|||+|.|.+.... ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 888888999999999986 2 34599999999999999999999884331 34699999
Q ss_pred EEcCCCC-CCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEeec
Q 003624 605 YDFDGPF-NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNT 660 (807)
Q Consensus 605 ~D~d~~~-~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~ 660 (807)
||++. + .+|++||++.++|..+........|++|.. +....+|+|++++.+-.+
T Consensus 85 ~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 85 YHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLREP 139 (155)
T ss_pred EeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecCC
Confidence 99998 5 579999999999999877766778999873 345679999999998643
No 110
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.4e-16 Score=144.95 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=91.2
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
|+|+|+|++|++|+..+..|.+||||++.++++ ..+|+++.++.||.|||.|.|.+... .+.|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCC-CCCCC
Confidence 579999999999999999999999999999875 48999999999999999999976544 5789999999998 88999
Q ss_pred cceeEEEEceeccCCCceeEEEeCCCc
Q 003624 616 SLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
+||++.+++.++..+ ..+.||.|...
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 999999999998765 55778888654
No 111
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=3.1e-16 Score=146.26 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=89.6
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--C----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--G----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D 606 (807)
..+.|.|+|++|+||++++..|.+||||++.+- . .+++|+++++++||+|||+|.|++..+ ....|.|.|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 346799999999999999989999999999952 2 358999999999999999999997543 45689999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCC-ceeEEEeC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISD-LADVWIPL 639 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L 639 (807)
+|. ++++++||.+.|+|.++.... ....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 899999999999999985543 46779886
No 112
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.5e-15 Score=144.08 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=100.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eEEEeeeccCCCCCee-ecEEEEEEeCCCCEEEEEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-------------QRFKTKVVRKSLSPSW-EEEFSFKVEDLKDELVISV 67 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-------------~~~kTkvi~~t~nP~W-nE~f~f~v~~~~~~L~i~V 67 (807)
...|++++|+||+ ++..|.+||||++.+.. ++++|+++++++||+| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4679999999998 77889999999999942 4689999999999999 999999995 457999999
Q ss_pred EEcCCCCC---CceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEE
Q 003624 68 LDEDKYFN---DDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTI 123 (807)
Q Consensus 68 ~D~d~~~~---d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l 123 (807)
||++..++ +++||++.+|+.++...+.......||+|.+++. ...+.|+|.|.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC--CCcEEEEEEEEe
Confidence 99875333 7999999999999987655555778999998764 357899999876
No 113
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.8e-16 Score=143.44 Aligned_cols=99 Identities=29% Similarity=0.581 Sum_probs=87.3
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEEEeC----CCCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~~ 73 (807)
.|+|+|++|++|+..+.. +.+||||++.+. +...+|+++++++||.|||.|.|.+.. ....|.++|||+|.+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 81 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRF 81 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence 589999999999999988 899999999984 346899999999999999999998854 347899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++|++||++.+++.++.. ...|++++.
T Consensus 82 ~~dd~lG~~~i~l~~l~~------~~~~~~~~~ 108 (111)
T cd04041 82 TADDRLGRVEIDLKELIE------DRNWMGRRE 108 (111)
T ss_pred CCCCcceEEEEEHHHHhc------CCCCCcccc
Confidence 899999999999999963 457888763
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=4.1e-16 Score=152.75 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D 606 (807)
..+.|+|+|++|+||++.|..|.+||||++.+. ...++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 457899999999999999999999999999873 3458999999999999999999975321 24579999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 641 (807)
+|. ++++++||++.+++.++......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999 8899999999999999887777899999975
No 115
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=6.3e-16 Score=144.96 Aligned_cols=101 Identities=30% Similarity=0.572 Sum_probs=89.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~ 75 (807)
+|.|+|++|+||+.++..|.+||||++.+. ....+|++++++.||.|||+|.|.+... ...|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 96 (124)
T cd08387 17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSR 96 (124)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCC
Confidence 689999999999999999999999999994 3468999999999999999999998532 4689999999999889
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
+++||++.++|+++...+ ....||+|+
T Consensus 97 ~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 97 DECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred CceeEEEEEecccccCCC---CcceEEECc
Confidence 999999999999996433 467899997
No 116
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.66 E-value=4.5e-16 Score=145.19 Aligned_cols=101 Identities=24% Similarity=0.386 Sum_probs=88.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG------RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~------~~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||++.+..|.+||||++.+. ..+++|++++++.||+|||+|.|++.. ....|.++|||++.
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~ 94 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP 94 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC
Confidence 699999999999999888899999999994 247899999999999999999999954 35899999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
++++++||++.|+|.++...+. ....||+|
T Consensus 95 ~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 95 DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 8999999999999999854221 35779876
No 117
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=5.6e-16 Score=148.54 Aligned_cols=91 Identities=32% Similarity=0.496 Sum_probs=83.9
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
|.|+|+|++|+||+..|. +.+||||++.+++++.+|+++++++||.|||+|.|.+..+ ...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCC-CCCCCE
Confidence 679999999999999997 8999999999999999999999999999999999987654 7889999999999 899999
Q ss_pred ceeEEEEceeccCC
Q 003624 617 LGHAEINFVKSDIS 630 (807)
Q Consensus 617 lG~~~i~l~~l~~~ 630 (807)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999886543
No 118
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=9.2e-16 Score=144.02 Aligned_cols=103 Identities=34% Similarity=0.627 Sum_probs=89.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEEEeC----CCCEEEEEEEEcCCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDKY 73 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~~ 73 (807)
++|.|+|++|+||+..+..+.+||||++.+. .++.+|++++++.||.|||+|.|.+.+ ....|.++|||++.+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~ 95 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRF 95 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence 5799999999999999989999999999993 467899999999999999999998522 236799999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++++||++.+++.++.. +.....|+.|++
T Consensus 96 ~~~~~iG~~~i~l~~l~~---~~~~~~W~~l~~ 125 (125)
T cd08386 96 SRNDPIGEVSLPLNKVDL---TEEQTFWKDLKP 125 (125)
T ss_pred cCCcEeeEEEEecccccC---CCCcceEEecCC
Confidence 899999999999999864 234689999974
No 119
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=4.5e-16 Score=150.09 Aligned_cols=99 Identities=28% Similarity=0.523 Sum_probs=87.1
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-----------------------------eEEeeccCCCCCCeEe
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----------------------------SRTSSIKFQQCDPMWN 585 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-----------------------------~~~T~v~~~t~nP~Wn 585 (807)
+.+.|+|+|++|+||+++|..|.+||||++.+... .++|+++++++||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 56889999999999999999999999999998531 2689999999999999
Q ss_pred EEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 586 EIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 586 E~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
|+|.|.+.......|.|+|||+| +++||++.+++.++.. ...+.||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999886555678999999986 7899999999999873 457999987
No 120
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.66 E-value=1e-15 Score=143.47 Aligned_cols=101 Identities=40% Similarity=0.684 Sum_probs=89.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~ 75 (807)
+|.|+|++|+||+..+..+.+||||++.+.+ ...+|++++++.||+|||+|.|.+.. ....|.|+|||++.+++
T Consensus 17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~ 96 (124)
T cd08385 17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK 96 (124)
T ss_pred EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence 7899999999999999899999999999853 46899999999999999999999853 24689999999999889
Q ss_pred CceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
+++||++.++|+++.. +.....|++|.
T Consensus 97 ~~~lG~~~i~l~~~~~---~~~~~~W~~l~ 123 (124)
T cd08385 97 HDLIGEVRVPLLTVDL---GHVTEEWRDLE 123 (124)
T ss_pred CceeEEEEEecCcccC---CCCcceEEEcc
Confidence 9999999999999854 33467999985
No 121
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=9.9e-16 Score=144.28 Aligned_cols=104 Identities=37% Similarity=0.588 Sum_probs=88.1
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEE-EeC---CCCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~-v~~---~~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|+||+..+.. |.+||||++.+. .++.+|++++++.||.|||+|.|. +.. ....|.+.|||+|.+
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 689999999999998876 899999999995 346799999999999999999994 432 235799999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++++||++.|+|.++...+++ ....|.+|++
T Consensus 97 ~~d~~lG~~~i~L~~l~~~~~~-~~~~~~~~~~ 128 (128)
T cd08388 97 SRDDVIGEVVCPLAGADLLNEG-ELLVSREIQP 128 (128)
T ss_pred CCCceeEEEEEeccccCCCCCc-eEEEEEeccC
Confidence 9999999999999999654333 3568998874
No 122
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=5.1e-16 Score=147.92 Aligned_cols=103 Identities=24% Similarity=0.389 Sum_probs=92.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEC----CeeEEeeccCCCCCCeEeEEEEEEeeCC---------------CCce
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---------------PPSM 599 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~----~~~~~T~v~~~t~nP~WnE~f~f~v~~~---------------~~~~ 599 (807)
|+|+|++|+||+.+ ..|.+||||++.++ ++.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 6679999999999999999999987554 4568
Q ss_pred EEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcC
Q 003624 600 LDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 643 (807)
Q Consensus 600 l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~ 643 (807)
|.|+|||++. ++++++||++.+++.++........|++|..+.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 788999999999999987777789999998764
No 123
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=1e-15 Score=139.50 Aligned_cols=91 Identities=25% Similarity=0.486 Sum_probs=81.2
Q ss_pred EEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC--CCCEEEEEEEEcCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQN----GYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~----g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~~~ 75 (807)
-|.|+|++|+||++.+.. +.+||||++++++++++|++++++.||+|||.|.|.+.+ ....|.|+|||++.+++
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~ 81 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSF 81 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCC
Confidence 388999999999987642 358999999999999999999999999999999999854 34589999999999999
Q ss_pred CceeEEEEeeccccccc
Q 003624 76 DDFVGFLKIPVSRVFDA 92 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~~ 92 (807)
|++||++.++|.++...
T Consensus 82 dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 82 NDYVATGSLSVQELLNA 98 (108)
T ss_pred CcceEEEEEEHHHHHhh
Confidence 99999999999999763
No 124
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=8e-16 Score=144.11 Aligned_cols=105 Identities=17% Similarity=0.352 Sum_probs=90.6
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-C--CeeEEeeccCCCCCCeEeEEEEEE-eeCC--CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-N--GKSRTSSIKFQQCDPMWNEIFEYD-AMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~-~--~~~~~T~v~~~t~nP~WnE~f~f~-v~~~--~~~~l~v~V~D~d 608 (807)
....|.|+|++|+||++.+..|.+||||.+.+ . .++++|+++++ +||+|||+|.|+ +... ....|.+.|||+|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 34679999999999999999999999999875 2 34488999887 999999999997 4322 3567999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 641 (807)
. ++++++||++.|+|.++..+.....|++|++
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred C-cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9 8999999999999999988888899999963
No 125
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=1e-15 Score=143.40 Aligned_cols=102 Identities=34% Similarity=0.491 Sum_probs=88.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEE-EeC---CCCEEEEEEEEcCCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFK-VED---LKDELVISVLDEDKY 73 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~-v~~---~~~~L~i~V~D~d~~ 73 (807)
.+|.|+|++|+||++.+..|.+||||++.+. .++.+|+++++ .||+|||+|.|+ +.. ....|.+.|||++.+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 4799999999999999988999999998873 35789999887 999999999998 533 357899999999999
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++++||++.|+|+++.. ......||+|+|
T Consensus 95 ~~~~~lG~~~i~L~~l~~---~~~~~~w~~L~p 124 (124)
T cd08389 95 RKERLIGEKVVPLSQLNL---EGETTVWLTLEP 124 (124)
T ss_pred ccCceEEEEEEeccccCC---CCCceEEEeCCC
Confidence 999999999999999954 235789999974
No 126
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.65 E-value=8.2e-16 Score=176.76 Aligned_cols=154 Identities=25% Similarity=0.328 Sum_probs=137.4
Q ss_pred eeeeeEEecChhchhcccCCCCCcccHHHHHhcCCcceeecccccCCCCCceEEEEEEEeecCcCC--ceeeEeEEEEEE
Q 003624 254 VLVDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANKLI--KATKGFEEQTYL 331 (807)
Q Consensus 254 ~l~d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~tY~~~~~~~~--k~~~~te~q~~~ 331 (807)
++.+..+.++++.+|+++|+ |+.|...+.+.++.+++...+|.....+ ...|.++|++++..++ |++.|.++|++.
T Consensus 279 v~~~~~~s~~~~~~~~~lf~-d~~~~~~~l~~~~~~~vs~~~~~~~~~~-~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~ 356 (590)
T KOG1032|consen 279 VLGRLPFSAPIGAFFSLLFG-DNTFFFFFLEDQDEIQVSPIPWKGPRSG-ILLRTLSYTKGLPAKSGPKSTDCEGTQTLH 356 (590)
T ss_pred ccccccccccccccceeecc-CcceeeeccccccccccccccccCCCcc-ceeEeccCCccCCCcCCCccccccceeeEE
Confidence 77888899999999999999 9999999999999999999999887665 8999999999988655 999999999999
Q ss_pred eeCCce-EEEEEEEeCCCCCCCCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHHHH
Q 003624 332 KADGKV-FAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (807)
Q Consensus 332 ~~~~~~-~~v~~~~~tpdVP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~ 410 (807)
+.+-.. +-|..++.||+||||++|.|+++|||+ |.+.++|+|.++.+|.|.+++|.+.|+|.++. +.+..++.
T Consensus 357 ~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~-----~~~~~~~~l~v~~~V~~~~~sw~~~~~~~~~~-~~k~lv~~ 430 (590)
T KOG1032|consen 357 HQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLIS-----RAGSNSCKLKVSTSVEWTKSSWDVPVSEIGSN-TLKDLVEI 430 (590)
T ss_pred eccchhhhhhhheeccCCccccceeeeeEEEEEE-----ecCCcceeecceeEEEeccCchhhcccccccc-chhhHHHH
Confidence 988554 778899999999999999999999999 57779999999999999999999999999986 55555555
Q ss_pred HHHHH
Q 003624 411 FATFL 415 (807)
Q Consensus 411 ~~~~l 415 (807)
+.+.+
T Consensus 431 ~~~~~ 435 (590)
T KOG1032|consen 431 LEKLL 435 (590)
T ss_pred HHHHH
Confidence 55555
No 127
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.65 E-value=9.2e-17 Score=134.15 Aligned_cols=67 Identities=40% Similarity=0.726 Sum_probs=48.9
Q ss_pred cccccccCCCccccccceEEEEEee-ccccceeEEeecCeeeeecCCCCcee-EEEEecccceeeEecC
Q 003624 690 SAFQKLFGLPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (807)
Q Consensus 690 ~~f~~~F~lp~~e~l~~~~~c~l~~-~~~~~g~lyls~~~~cf~s~~~~~~~-~~~i~~~~i~~i~k~~ 756 (807)
+.|++.|+||.+|.|+++|.|+|++ +++++|+||||++||||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 4799999999999999999999999 99999999999999999999999888 9999999999999964
No 128
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=3.3e-15 Score=142.33 Aligned_cols=119 Identities=18% Similarity=0.337 Sum_probs=99.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCC-C---CCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDK-Y---FND 76 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~-~---~~d 76 (807)
.|.|.|++|++||+++ +|||.+.+++++ .+|+++.++.||.|+|+|.|........|.|.||+.+. . .++
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCC
Confidence 5899999999999864 799999999987 69999999999999999999876566889999986653 2 257
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEcccCCCCC------CCCcceEEEEEEEEEec
Q 003624 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKS------KNKDCGEILLTISFSHN 128 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~------~~~~~G~I~l~l~~~~~ 128 (807)
++||.+.||+.++.. +...+.||+|.+..+.+ .....|.|++++.|.+.
T Consensus 87 ~~IG~V~Ip~~~l~~---~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 87 QLIGTVNIPVTDVSS---RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cEEEEEEEEHHHhcC---CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 899999999999974 44578999999876553 13456899999999753
No 129
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=1.4e-15 Score=140.83 Aligned_cols=112 Identities=21% Similarity=0.342 Sum_probs=89.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCCCCCCCc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~~~~~dd 615 (807)
|+|+|++|+||+.. |.+||||++.+++++ ++|+++++ .||.|||+|.|.+... ....|.|.+||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999986 789999999999865 79999988 9999999999987553 23568888899887 66666
Q ss_pred cceeEEEEceeccCCCceeEEEeCCCcCc-CccCceEEEEEEE
Q 003624 616 SLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFL 657 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~l~~ 657 (807)
.+|.+.| ..+..+...+.|++|.+..+ ....|+|+|++.|
T Consensus 77 ~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6666554 45555677799999987543 3458999999864
No 130
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.64 E-value=2.5e-15 Score=143.13 Aligned_cols=116 Identities=14% Similarity=0.300 Sum_probs=97.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCC---C
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFN---E 613 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~---~ 613 (807)
.|.|.|++|++|++++ ||||.|.++++. .+|+++.++.||.|||.|+|..... ...|.|.||+.+...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccccC
Confidence 4999999999999865 799999999998 6999999999999999999965433 5789999987654122 5
Q ss_pred CccceeEEEEceeccCCCceeEEEeCCCcCcC---------ccCceEEEEEEEee
Q 003624 614 ATSLGHAEINFVKSDISDLADVWIPLQGKLAQ---------ACQSKLHLRIFLNN 659 (807)
Q Consensus 614 dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~---------~~~G~l~l~l~~~~ 659 (807)
+++||.+.|++.++..+...+.||+|.+..+. ...++||+++.|..
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 78999999999999988889999999875443 34689999999874
No 131
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.64 E-value=1.8e-15 Score=142.46 Aligned_cols=102 Identities=32% Similarity=0.489 Sum_probs=88.9
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (807)
.+|.|+|++|+||+..+..+.+||||++.+. ..+.+|++++++.||+|||+|.|.+... ...|.|.|||.+.
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 3799999999999999998999999999995 4679999999999999999999999432 4789999999997
Q ss_pred C--CCCceeEEEEeecccccccCCCCCccEEEEcc
Q 003624 73 Y--FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 73 ~--~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~ 105 (807)
+ +++++||++.++|.++... .....||+|.
T Consensus 96 ~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 96 FLSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred ccCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 5 6899999999999998543 2468999984
No 132
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=1.1e-15 Score=142.87 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=81.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEe-eCCCCceEEEEEEEcCCCCCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v-~~~~~~~l~v~V~D~d~~~~~ 613 (807)
..+.|+|+|++|++|+. +..|.+||||+|.++++.++|+++++++||+|||+|.|.. .......|.|+|||+|. +++
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s~ 103 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GWD 103 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CCC
Confidence 44789999999999984 6788999999999999999999999999999999999964 33457789999999999 889
Q ss_pred CccceeEEEEceecc
Q 003624 614 ATSLGHAEINFVKSD 628 (807)
Q Consensus 614 dd~lG~~~i~l~~l~ 628 (807)
|++||++.+++....
T Consensus 104 dd~IG~~~i~l~~~~ 118 (127)
T cd04032 104 DDLLGTCSVVPEAGV 118 (127)
T ss_pred CCeeEEEEEEecCCc
Confidence 999999999998643
No 133
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.1e-15 Score=143.16 Aligned_cols=90 Identities=23% Similarity=0.408 Sum_probs=81.4
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee--EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~--~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
+|+|+|++|++|+++|..|.+||||++.++++. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 489999999999999999999999999999876 577888899999999999998765556789999999999 88999
Q ss_pred cceeEEEEceecc
Q 003624 616 SLGHAEINFVKSD 628 (807)
Q Consensus 616 ~lG~~~i~l~~l~ 628 (807)
+||++.+++.+..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999998754
No 134
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=3.2e-15 Score=140.27 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=93.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCcc
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATS 616 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~ 616 (807)
.|+|+|++|+ |...+..+.+||||++.++++ .++|+++++++||.|||.|.|.+. ....|.|+|||++. .+.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 4999999999 655656889999999999988 699999999999999999999864 35789999999999 889999
Q ss_pred ceeEEEEceeccCCCc-----eeEEEeCCCcC--cCccCceEEEEE
Q 003624 617 LGHAEINFVKSDISDL-----ADVWIPLQGKL--AQACQSKLHLRI 655 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~-----~~~w~~L~~k~--~~~~~G~l~l~l 655 (807)
||++.+++.++..... ...|++|.... .....|+|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999988654322 23589997443 234578888765
No 135
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=5.5e-15 Score=140.17 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=91.6
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-------------CeeEEeeccCCCCCCeE-eEEEEEEeeCCCCceEEEE
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------------GKSRTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVE 603 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-------------~~~~~T~v~~~t~nP~W-nE~f~f~v~~~~~~~l~v~ 603 (807)
+..|++++|+||+ ++..|++||||++.+. ++.++|+++++++||+| ||.|.|.+. ..+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4789999999998 7788999999999984 23689999999999999 999999774 35689999
Q ss_pred EEEcCCCCCC---CccceeEEEEceeccCC---CceeEEEeCCCcCc-CccCceEEEEE
Q 003624 604 VYDFDGPFNE---ATSLGHAEINFVKSDIS---DLADVWIPLQGKLA-QACQSKLHLRI 655 (807)
Q Consensus 604 V~D~d~~~~~---dd~lG~~~i~l~~l~~~---~~~~~w~~L~~k~~-~~~~G~l~l~l 655 (807)
|||++. .++ +++||++.|++.++..+ .....|++|+.+.. ....|+|.+++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999876 333 78999999999997543 23577999985432 22367777765
No 136
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.62 E-value=3.1e-15 Score=139.91 Aligned_cols=101 Identities=27% Similarity=0.452 Sum_probs=87.5
Q ss_pred CEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcC
Q 003624 1 MKLVVRVIEARNIPAMD-QNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDED 71 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d 71 (807)
.+|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+... ...|.|+|||++
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 93 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD 93 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence 36899999999999998 778999999999842 468999999999999999999998542 468999999999
Q ss_pred CCCCCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 72 KYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 72 ~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
.++++++||++.++|.++... .....||+|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~---~~~~~w~~l 123 (123)
T cd08521 94 RFGRNTFLGEVEIPLDSWDLD---SQQSEWYPL 123 (123)
T ss_pred CCcCCceeeEEEEeccccccc---CCCccEEEC
Confidence 988999999999999999532 236789987
No 137
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=3.9e-15 Score=139.55 Aligned_cols=104 Identities=32% Similarity=0.565 Sum_probs=93.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccC-CCCCeeecEEEEEEeCC----CCEEEEEEEEcCCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRK-SLSPSWEEEFSFKVEDL----KDELVISVLDEDKYFND 76 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~-t~nP~WnE~f~f~v~~~----~~~L~i~V~D~d~~~~d 76 (807)
+|.|+|++|+||+..+..+.+||||++.++++..+|+++++ +.||.|||+|.|.+... ...|.|+|||.+.+.++
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d 81 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDD 81 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCC
Confidence 68999999999999998899999999999999999999885 89999999999999665 57899999999998899
Q ss_pred ceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 77 DFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++||++.+++.++...+ ..+.|+.|.+..
T Consensus 82 ~~iG~~~i~l~~l~~~~---~~~~~~~l~p~~ 110 (124)
T cd04049 82 DFIGEATIHLKGLFEEG---VEPGTAELVPAK 110 (124)
T ss_pred CeEEEEEEEhHHhhhCC---CCcCceEeeccc
Confidence 99999999999997633 358899999864
No 138
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.1e-15 Score=142.50 Aligned_cols=102 Identities=34% Similarity=0.587 Sum_probs=90.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEEEeeeccCCCCCeeecEEEEEEeCC----------------CCE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----RQRFKTKVVRKSLSPSWEEEFSFKVEDL----------------KDE 62 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~----~~~~kTkvi~~t~nP~WnE~f~f~v~~~----------------~~~ 62 (807)
|.|+|++|+||+.+ .+|.+||||++.++ ..+++|++++++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78899999999998 7789999999999999999999998543 468
Q ss_pred EEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 63 LVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 63 L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
|.|+|||.+.+++++|||++.+++.++... .....||+|.++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 999999999888899999999999998642 2468999999875
No 139
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=7.1e-15 Score=136.18 Aligned_cols=112 Identities=29% Similarity=0.442 Sum_probs=89.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCCCCCce
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~d~~ 78 (807)
|.|+|++|+||+.. |.+||||.+.++++ ..+|+++++ .||.|||+|.|.+.+. ...|.|.+||.+....+.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999986 78999999999875 479999999 9999999999999652 3578888999887666666
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+|.+.| ..+.. +.....||+|.++... ....|+|+|.+.|
T Consensus 78 ~g~v~l--~~~~~---~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVAL--SKLDL---GQGKDEWFPLTPVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred EEEEEe--cCcCC---CCcceeEEECccCCCC--CCcCceEEEEEEC
Confidence 776554 44432 2346799999987542 4678999999876
No 140
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=5.6e-15 Score=137.53 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus 2 ~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG 81 (120)
T cd04045 2 VLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLG 81 (120)
T ss_pred eEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeee
Confidence 3889999999999999889999999999976 468999999999999999999999777789999999999988999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCC
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++.+++.++... ....||.|....
T Consensus 82 ~~~~~l~~l~~~----~~~~~~~~~~~~ 105 (120)
T cd04045 82 SVEINVSDLIKK----NEDGKYVEYDDE 105 (120)
T ss_pred EEEEeHHHhhCC----CCCceEEecCCC
Confidence 999999999764 357899998654
No 141
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=3e-15 Score=137.46 Aligned_cols=99 Identities=25% Similarity=0.426 Sum_probs=85.3
Q ss_pred CCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceecc-CCC
Q 003624 554 SSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD-ISD 631 (807)
Q Consensus 554 ~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~-~~~ 631 (807)
.+|.+||||++.++++. ++|++++++.||.|||.|.|.+.+...+.|.|+|||++. + ++++||++.++|.++. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 47899999999998865 899999999999999999998766556789999999998 7 8999999999999874 344
Q ss_pred ceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 632 LADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 632 ~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
..+.|++|.+ ..+|+|++++.|.
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEe
Confidence 5689999985 2479999999885
No 142
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=9.2e-16 Score=145.68 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=88.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|.|+|++|+||++.|..|.+||||++.+.+ ..++|+++++++||+|||+|.|++..+ ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 4577999999999999999999999999999852 248999999999999999999987543 345799999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
|. .+++++||++.+++.. .+...+.|+++...
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 98 7889999999999976 34455789887543
No 143
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=1.1e-14 Score=136.70 Aligned_cols=119 Identities=24% Similarity=0.391 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
+|.|+|++|+ |...+..+.+||||++.++++ ..+|++++++.||.|||.|.|.+. ....|.|+|||++..+.+++||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence 6899999999 555555888999999999877 899999999999999999999985 4579999999999988999999
Q ss_pred EEEeecccccccCCCCCcc--EEEEcccCCCCCCCCcceEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPT--AWHSLQPKNKKSKNKDCGEILLTI 123 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~--~w~~L~~~~~~~~~~~~G~I~l~l 123 (807)
++.++|.++...+.+.... .|+.|...+. ......|+|.+.+
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~~ 124 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSENK-GSSVKVGELTVIL 124 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccCC-CcceeeeeEEEEe
Confidence 9999999998655444443 4888885442 1346789998875
No 144
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=1.2e-14 Score=139.98 Aligned_cols=118 Identities=14% Similarity=0.275 Sum_probs=96.4
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE-----CCeEEEeeeccCCCCCeeecEEEEEEeCC---------CCEEEEE
Q 003624 3 LVVRVIEARN--IPAMDQNGYSDPYVRLQL-----GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---------KDELVIS 66 (807)
Q Consensus 3 L~V~Vi~A~~--L~~~d~~g~~DPyv~v~l-----~~~~~kTkvi~~t~nP~WnE~f~f~v~~~---------~~~L~i~ 66 (807)
..++|..|++ |+..+.++.+||||++++ ..++.+|+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 778887889999999997 24689999999999999999999999544 3579999
Q ss_pred EEEcCCC-CCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 67 VLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 67 V~D~d~~-~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
|||.+.+ .+|++||++.++|..+... .....|++|.... ....|+|++.++.-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~---~~~~~~~~L~~~~----k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK---CEIHESVDLMDGR----KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc---CcceEEEEhhhCC----CCcCCEEEEEEEecC
Confidence 9999986 4799999999999998542 2345699988433 267899999999853
No 145
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.61 E-value=3.6e-15 Score=141.56 Aligned_cols=96 Identities=33% Similarity=0.505 Sum_probs=84.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccCCCCCeeecEEEEEEeC-----CCCEEEEEEE
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRKSLSPSWEEEFSFKVED-----LKDELVISVL 68 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-------~~~~kTkvi~~t~nP~WnE~f~f~v~~-----~~~~L~i~V~ 68 (807)
.+|.|+|++|++|+..+.+|.+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 3689999999999999988999999999995 347999999999999999999999854 2468999999
Q ss_pred EcCCCCCCceeEEEEeecccccccCCCC
Q 003624 69 DEDKYFNDDFVGFLKIPVSRVFDADNKS 96 (807)
Q Consensus 69 D~d~~~~d~~iG~v~i~L~~l~~~~~~~ 96 (807)
|++.++++++||++.++|.++...++.+
T Consensus 96 d~d~~~~d~~iG~~~i~l~~l~~~~~~~ 123 (133)
T cd04009 96 DYDLLGSNDFEGEAFLPLNDIPGVEDTS 123 (133)
T ss_pred ecCCCCCCcEeEEEEEeHHHCCcccccc
Confidence 9999888999999999999997555443
No 146
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=1e-14 Score=137.38 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=96.6
Q ss_pred EEEEEEEEeEcCCCCC--CCCCCCcEEEEEEC------CeeEEeeccCCCC-CCeEeEEEEEEeeCCCCceEEEEEEEcC
Q 003624 538 LLTVALIKGDNLAAVD--SSGFCDPYVVFTCN------GKSRTSSIKFQQC-DPMWNEIFEYDAMDEPPSMLDVEVYDFD 608 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d--~~g~sDPYv~v~~~------~~~~~T~v~~~t~-nP~WnE~f~f~v~~~~~~~l~v~V~D~d 608 (807)
.|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5999999999999988 57899999999983 3458888877765 9999999999887554567999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcC-ccCceEEEEEEE
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFL 657 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~l~~ 657 (807)
. . ++++||++.+++.++..+ ..|++|..+.+. ...|.|.+++.+
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 889999999999998543 579999876554 557899988875
No 147
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.60 E-value=6.7e-15 Score=137.69 Aligned_cols=102 Identities=30% Similarity=0.554 Sum_probs=88.7
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMD-QNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d-~~g~~DPyv~v~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~ 74 (807)
+|.|+|++|+||+..+ ..+.+||||++.+. ....+|++++++.||+|||.|.|.+... ...|.|+|||++..+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~ 94 (123)
T cd08390 15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFS 94 (123)
T ss_pred EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCC
Confidence 6899999999999998 68899999999984 3568899999999999999999998542 468999999999988
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++++||++.++|.++.... ....|++|.+
T Consensus 95 ~~~~iG~~~i~L~~l~~~~---~~~~w~~L~~ 123 (123)
T cd08390 95 RHCIIGHVLFPLKDLDLVK---GGVVWRDLEP 123 (123)
T ss_pred CCcEEEEEEEeccceecCC---CceEEEeCCC
Confidence 8999999999999996533 3569999974
No 148
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=3.8e-15 Score=141.40 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=84.2
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--Ce---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcC
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d 608 (807)
...|.|+|++|+||+..|..|.+||||++.+. ++ +++|+++++++||+|||+|.|.+..+ ....|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 45699999999999999999999999999973 22 36899999999999999999987542 3567999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
. ++++++||++.|.... .+...+.|..+.
T Consensus 94 ~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 94 E-DGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred C-CCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 9 8999999999997653 344456666554
No 149
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=8e-15 Score=140.54 Aligned_cols=89 Identities=37% Similarity=0.637 Sum_probs=84.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGF 81 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~ 81 (807)
.|+|+|++|+||+..+. +.+||||++.+++++.+|++++++.||.|||+|.|.+.+....|.|+|||++.+++|++||+
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~ 81 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGE 81 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEE
Confidence 58999999999999887 88999999999999999999999999999999999998878899999999999999999999
Q ss_pred EEeecccccc
Q 003624 82 LKIPVSRVFD 91 (807)
Q Consensus 82 v~i~L~~l~~ 91 (807)
+.+++.++..
T Consensus 82 a~i~l~~l~~ 91 (145)
T cd04038 82 AEIDLEPLVE 91 (145)
T ss_pred EEEEHHHhhh
Confidence 9999999865
No 150
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=2.2e-14 Score=135.06 Aligned_cols=116 Identities=27% Similarity=0.507 Sum_probs=98.1
Q ss_pred CEEEEEEEEeeCCCCCC--CCCCCCcEEEEEE------CCeEEEeeeccCCC-CCeeecEEEEEEeCCC-CEEEEEEEEc
Q 003624 1 MKLVVRVIEARNIPAMD--QNGYSDPYVRLQL------GRQRFKTKVVRKSL-SPSWEEEFSFKVEDLK-DELVISVLDE 70 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d--~~g~~DPyv~v~l------~~~~~kTkvi~~t~-nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (807)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+.... ..|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999999888 5788999999999 34568999988775 9999999999996443 5799999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+.. ++++||++.+++.++.. +..|++|....+. ....|.|.+++++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKGE--PLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcC------ceEEEEecCCCCC--CCcceeEEEEEEE
Confidence 987 89999999999999842 4579999876543 3567999998875
No 151
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=4.6e-16 Score=164.03 Aligned_cols=103 Identities=39% Similarity=0.652 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEe--CCCCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~i~V~D~d~~~ 74 (807)
.|.|+|.+|+||.++|.||.+||||++.+- ..+++|++++.++||+|||+|.|.+. +.++.|.|+|||||.-+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs 260 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS 260 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence 588999999999999999999999999993 35799999999999999999999994 44689999999999989
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++||+|...+.+++|... ....||+|....
T Consensus 261 RNDFMGslSFgisEl~K~----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 261 RNDFMGSLSFGISELQKA----PVDGWYKLLSQE 290 (683)
T ss_pred cccccceecccHHHHhhc----chhhHHHHhhhh
Confidence 999999999999999763 367999998654
No 152
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=6.5e-15 Score=139.47 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=92.4
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCC-CCceEEEEEEEcC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE-PPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~-~~~~l~v~V~D~d 608 (807)
.++.|+|+|++|+||+..+..|.+||||++.+.+ ..++|+++.++.||.|||+|.|.+... ....|.|+|||++
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~ 90 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD 90 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC
Confidence 4477999999999999999889999999999863 458999999999999999999987543 3568999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
. .+++++||++.+++.++... ..+.||+|...
T Consensus 91 ~-~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 91 R-TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred C-CCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8 78899999999999998754 67899999753
No 153
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.59 E-value=4.3e-15 Score=141.01 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=82.5
Q ss_pred CCeEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECC--e---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNG--K---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVY 605 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~--~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~ 605 (807)
..+.|+|+|++|+||+++|. .+.+||||++.+.. + +++|+++++++||+|||.|.|++..+ ....|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 34669999999999999983 35699999999643 2 27999999999999999999988653 2456999999
Q ss_pred EcCCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
|+|. ++++++||++.+.+.. .+...+.|..+
T Consensus 93 d~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 93 NQDS-PGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred eCCC-CcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 9999 8999999999999864 33334455554
No 154
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=1.8e-15 Score=144.20 Aligned_cols=105 Identities=24% Similarity=0.349 Sum_probs=88.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--Ce---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|.|+|++|+||+..|..|.+||||++.+. ++ +++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 346799999999999999999999999999973 32 37899999999999999999987532 345799999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
|. ++++++||++.+++.. .+.....|++|...
T Consensus 93 d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CC-CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99 8999999999999987 35566889988643
No 155
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.4e-14 Score=133.85 Aligned_cols=112 Identities=34% Similarity=0.541 Sum_probs=95.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|+|+|++|++|+..+..+.+||||++.+++ ...+|+++.++.||.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999999888999999999965 45899999999999999999999965 4678999999999888899999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILL 121 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l 121 (807)
++.+++.++... .....|++|.++++ ...|.+.|
T Consensus 81 ~~~~~l~~l~~~---~~~~~~~~L~~~g~----~~~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPE---ETTELTLPLDGQGG----GKLGAVFL 114 (115)
T ss_pred EEEEEHHHcCCC---CcEEEEEECcCCCC----ccCceEEc
Confidence 999999998652 34688999987654 44666653
No 156
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.58 E-value=8.5e-15 Score=141.23 Aligned_cols=96 Identities=40% Similarity=0.678 Sum_probs=84.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----------------------------EEEeeeccCCCCCeeecE
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----------------------------RFKTKVVRKSLSPSWEEE 51 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-----------------------------~~kTkvi~~t~nP~WnE~ 51 (807)
+.|.|+|++|+||++++.+|.+||||++.+... ..+|+++.+++||.|||+
T Consensus 28 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~ 107 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNET 107 (153)
T ss_pred EEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccE
Confidence 479999999999999999999999999998532 378999999999999999
Q ss_pred EEEEEeCC-CCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 52 FSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 52 f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
|.|.+... ...|.|+|||++ +++||++.++++++.. . ..+.||+|
T Consensus 108 F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~---~~d~W~~L 153 (153)
T cd08676 108 FRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-C---GLDSWFKL 153 (153)
T ss_pred EEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-C---CCCCeEeC
Confidence 99999654 578999999998 8899999999999962 1 35899987
No 157
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.58 E-value=1.1e-14 Score=138.28 Aligned_cols=100 Identities=24% Similarity=0.311 Sum_probs=83.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|+||+..+..|.+||||++++.+ .+.+|+++++++||+|||+|.|.++. .+..|.|+|||+|.+
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~ 95 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED 95 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence 6999999999999999889999999999942 25789999999999999999999953 357899999999998
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++++||++.|+....- .....|..+..
T Consensus 96 ~~~~~iG~v~lg~~~~g-----~~~~hW~~ml~ 123 (136)
T cd08406 96 GKTPNVGHVIIGPAASG-----MGLSHWNQMLA 123 (136)
T ss_pred CCCCeeEEEEECCCCCC-----hhHHHHHHHHH
Confidence 99999999999775421 12345655553
No 158
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.58 E-value=8.6e-15 Score=143.42 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=88.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeC----CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED----LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~----~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||+..+..+.+||||++.+. ..+++|++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 28 ~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~ 107 (162)
T cd04020 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK 107 (162)
T ss_pred eEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC
Confidence 699999999999999988999999999983 357999999999999999999998632 23589999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++++++||++.+++.++...+ ....|+.|..
T Consensus 108 ~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~~ 138 (162)
T cd04020 108 LSSNDFLGGVRLGLGTGKSYG---QAVDWMDSTG 138 (162)
T ss_pred CCCCceEEEEEEeCCccccCC---CccccccCCh
Confidence 888999999999999986432 3578988864
No 159
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=9e-15 Score=136.76 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=80.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEe--CCCCEEEEEEEEcCCCCCCcee
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVE--DLKDELVISVLDEDKYFNDDFV 79 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~--~~~~~L~i~V~D~d~~~~d~~i 79 (807)
+|+|+|++|++|+. +..+.+||||++.+++++.+|++++++.||+|||+|.|... +....|.|+|||++.+++|++|
T Consensus 29 ~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~I 107 (127)
T cd04032 29 TLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLL 107 (127)
T ss_pred EEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCee
Confidence 69999999999984 66788999999999999999999999999999999999853 3468999999999998899999
Q ss_pred EEEEeeccccc
Q 003624 80 GFLKIPVSRVF 90 (807)
Q Consensus 80 G~v~i~L~~l~ 90 (807)
|++.++|....
T Consensus 108 G~~~i~l~~~~ 118 (127)
T cd04032 108 GTCSVVPEAGV 118 (127)
T ss_pred EEEEEEecCCc
Confidence 99999998764
No 160
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.58 E-value=7.5e-15 Score=139.37 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=81.5
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-------CeeEEeeccCCCCCCeEeEEEEEEeeCC----CCceEEEEE
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-------GKSRTSSIKFQQCDPMWNEIFEYDAMDE----PPSMLDVEV 604 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-------~~~~~T~v~~~t~nP~WnE~f~f~v~~~----~~~~l~v~V 604 (807)
...|+|+|++|++|++.+..|.+||||+|.+. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 35699999999999999989999999999985 2358999999999999999999987542 345899999
Q ss_pred EEcCCCCCCCccceeEEEEceecc
Q 003624 605 YDFDGPFNEATSLGHAEINFVKSD 628 (807)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~l~ 628 (807)
||+|. ++++++||++.++|.++.
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCC
Confidence 99999 888999999999999875
No 161
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.57 E-value=7.3e-15 Score=136.91 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=86.3
Q ss_pred EEEeEcCCCCCCCCCCCcEEEEEECCee-------EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCC---CCC
Q 003624 543 LIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG---PFN 612 (807)
Q Consensus 543 vi~a~~L~~~d~~g~sDPYv~v~~~~~~-------~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~---~~~ 612 (807)
.++|++|++.|..|.+||||++.+.+.. ++|+++++++||+|||+|.|.+..+....|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4899999999999999999999986543 899999999999999999998765556789999999995 157
Q ss_pred CCccceeEEEEceeccCCCceeEEEeCC
Q 003624 613 EATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
++++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999988777788899993
No 162
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.57 E-value=1.1e-14 Score=138.86 Aligned_cols=105 Identities=27% Similarity=0.385 Sum_probs=87.3
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEE--CCe---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC--NGK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~--~~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|+||++.+..|.+||||++.+ ++. +++|+++++++||.|||+|.|.+..+ ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 45779999999999999999999999999997 332 37899999999999999999987532 245799999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
|. ++++++||++.+++.+. +...+.|++|...
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CC-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 98 88999999999999875 3445667776543
No 163
>PLN03008 Phospholipase D delta
Probab=99.57 E-value=1.3e-14 Score=168.13 Aligned_cols=122 Identities=20% Similarity=0.368 Sum_probs=103.3
Q ss_pred eEEEEEEEEeEcCCCCCC------------------------------------------CCCCCcEEEEEECCee-EEe
Q 003624 537 WLLTVALIKGDNLAAVDS------------------------------------------SGFCDPYVVFTCNGKS-RTS 573 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~------------------------------------------~g~sDPYv~v~~~~~~-~~T 573 (807)
|.|.|+|.+|++|+.+|. .++|||||+|.+++++ .+|
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 679999999999986332 3478999999998875 699
Q ss_pred eccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc--cCceE
Q 003624 574 SIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA--CQSKL 651 (807)
Q Consensus 574 ~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~--~~G~l 651 (807)
+++++++||+|||+|.|.+.. +...|.|+|||+|. ++ +|+||++.|++.++..++..+.|++|.+..++. ..++|
T Consensus 94 rVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 999999999999999998755 46799999999998 76 579999999999999999999999998755443 36799
Q ss_pred EEEEEEeecC
Q 003624 652 HLRIFLNNTK 661 (807)
Q Consensus 652 ~l~l~~~~~~ 661 (807)
|++++|....
T Consensus 171 ~v~lqf~pv~ 180 (868)
T PLN03008 171 FIDMKFTPFD 180 (868)
T ss_pred EEEEEEEEcc
Confidence 9999986443
No 164
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.57 E-value=1.1e-14 Score=138.81 Aligned_cols=104 Identities=26% Similarity=0.449 Sum_probs=86.7
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--Ce---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|++|+.+|..|.+||||+|.+. ++ .++|+++++++||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 446799999999999999999999999999984 22 37899999999999999999987533 234799999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCC
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 641 (807)
|. +++|++||++.|++... +...+.|+++..
T Consensus 93 ~~-~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred CC-CCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99 89999999999999763 444567777753
No 165
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=9.9e-15 Score=138.90 Aligned_cols=106 Identities=24% Similarity=0.332 Sum_probs=84.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEE-CC----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTC-NG----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~-~~----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|+||+..|..|.+||||++.+ ++ ++++|+++++|+||.|||+|.|.+..+ ....|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 44779999999999999999999999999996 33 237999999999999999999987432 233699999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
|. .+++++||++.|....... ...+.|..|...
T Consensus 92 d~-~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred CC-CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 98 8999999999876533322 234678777543
No 166
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.56 E-value=8e-15 Score=139.80 Aligned_cols=103 Identities=29% Similarity=0.483 Sum_probs=87.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (807)
++|.|+|++|+||+..+.+|.+||||++.+.. .+.+|++++++.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 57999999999999999999999999999842 25789999999999999999999853 34679999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++++++||++.+++... . .....|+.|....
T Consensus 95 ~~~~~~iG~~~~~~~~~-~----~~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKAS-G----SGGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcCC-C----chHHHHHHHHhCC
Confidence 99999999999999882 1 2357888886543
No 167
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=2e-14 Score=136.42 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=76.6
Q ss_pred EEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQ--NGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d 71 (807)
+|.|.|++|+||+.++. .+.+||||++++.. .+++|++++++.||+|||.|.|.++.. ...|.|+|||+|
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d 95 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQD 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCC
Confidence 69999999999999983 35599999999954 257899999999999999999999542 478999999999
Q ss_pred CCCCCceeEEEEeeccc
Q 003624 72 KYFNDDFVGFLKIPVSR 88 (807)
Q Consensus 72 ~~~~d~~iG~v~i~L~~ 88 (807)
.++++++||++.+++..
T Consensus 96 ~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 96 SPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCcCcceeceEEecCcC
Confidence 99999999999999865
No 168
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=1.9e-14 Score=134.84 Aligned_cols=88 Identities=32% Similarity=0.535 Sum_probs=80.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeecEEEEEEe-CCCCEEEEEEEEcCCCCCCcee
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~--~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~i 79 (807)
|+|+|++|++|+..+..|.+||||++.+++.. .+|++++++.||.|||+|.|.+. +....|.|+|||++.+++|++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999998765 57888999999999999999984 3457899999999998899999
Q ss_pred EEEEeeccccc
Q 003624 80 GFLKIPVSRVF 90 (807)
Q Consensus 80 G~v~i~L~~l~ 90 (807)
|++.+++.+..
T Consensus 82 G~~~i~l~~~~ 92 (124)
T cd04037 82 GETVIDLEDRF 92 (124)
T ss_pred EEEEEeecccc
Confidence 99999998874
No 169
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=2.3e-14 Score=136.02 Aligned_cols=102 Identities=34% Similarity=0.589 Sum_probs=87.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|+||+..+..|.+||||++.+.+ .+.+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~ 93 (133)
T cd08384 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG 93 (133)
T ss_pred EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC
Confidence 7999999999999999999999999999952 468999999999999999999998532 46899999999988
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
+++++||++.+++... +.....||.+....
T Consensus 94 ~~~~~lG~~~i~l~~~-----~~~~~~W~~~l~~~ 123 (133)
T cd08384 94 KSNDYIGGLQLGINAK-----GERLRHWLDCLKNP 123 (133)
T ss_pred CCccEEEEEEEecCCC-----CchHHHHHHHHhCC
Confidence 8899999999999752 12356798887543
No 170
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.55 E-value=7.8e-15 Score=119.32 Aligned_cols=60 Identities=37% Similarity=0.556 Sum_probs=57.2
Q ss_pred CCCccccccceEEEEEeeccccceeEEeecCeeeeecCCCCcee-EEEEecccceeeEecC
Q 003624 697 GLPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKT-NFFFLWEDIEDIQVLP 756 (807)
Q Consensus 697 ~lp~~e~l~~~~~c~l~~~~~~~g~lyls~~~~cf~s~~~~~~~-~~~i~~~~i~~i~k~~ 756 (807)
+||++|+|+.+|.|+|++.++++||||||++|+||+|+.+|+.+ +++||+.||+.|+|.+
T Consensus 1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~~ 61 (61)
T smart00568 1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKST 61 (61)
T ss_pred CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEECC
Confidence 37999999999999999999999999999999999999999999 9999999999999963
No 171
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.55 E-value=6.2e-15 Score=140.18 Aligned_cols=104 Identities=27% Similarity=0.436 Sum_probs=85.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--Ce---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|++|+++|..|.+||||++.+. ++ .++|+++++++||.|||+|.|.+..+ ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 457799999999999999999999999999973 22 37899999999999999999987443 224699999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCC
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQG 641 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 641 (807)
|. ++++++||++.+++.. .+...+.|+++..
T Consensus 92 ~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 92 DR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 99 8999999999998763 3444567877754
No 172
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.54 E-value=3.9e-14 Score=134.12 Aligned_cols=103 Identities=40% Similarity=0.654 Sum_probs=90.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeC--CCCEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED--LKDELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~~ 74 (807)
+|.|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+.. ....|.|+|||++.+.
T Consensus 14 ~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~ 93 (131)
T cd04026 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTT 93 (131)
T ss_pred EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCC
Confidence 689999999999999888999999999995 367999999999999999999999854 3578999999999888
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
++++||++.++|.++... ....||+|....
T Consensus 94 ~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 94 RNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred CcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 899999999999999642 467899998643
No 173
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=6.4e-14 Score=127.62 Aligned_cols=93 Identities=18% Similarity=0.331 Sum_probs=75.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEc------
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF------ 607 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~------ 607 (807)
|.|+|.+|+||+ |.+||||.+.++. .+.+|+++++|+||+|||+|+|++. ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 689999999995 4699999999853 3489999999999999999999875 366999999998
Q ss_pred -CCCCCCCccceeEEEEcee--ccCCCceeEEEeC
Q 003624 608 -DGPFNEATSLGHAEINFVK--SDISDLADVWIPL 639 (807)
Q Consensus 608 -d~~~~~dd~lG~~~i~l~~--l~~~~~~~~w~~L 639 (807)
|. .++|++||++.+.|+. +...+....-+.|
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 55 6889999999998865 4333444445555
No 174
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.54 E-value=3.1e-14 Score=135.77 Aligned_cols=101 Identities=33% Similarity=0.537 Sum_probs=84.0
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (807)
.+|.|+|++|++|+.++..|.+||||++.++. .+.+|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~ 94 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR 94 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 37899999999999999999999999999942 357899999999999999999998432 2489999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++++++||++.|++.... .....|+.+..
T Consensus 95 ~~~~~~iG~~~i~~~~~~-----~~~~~W~~~~~ 123 (136)
T cd08402 95 IGKNDPIGKVVLGCNATG-----AELRHWSDMLA 123 (136)
T ss_pred CCCCceeEEEEECCccCC-----hHHHHHHHHHh
Confidence 999999999999997631 12345666654
No 175
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.54 E-value=4.9e-14 Score=131.91 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCC---CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~---~~~~l~v~V~D 606 (807)
..+.|+|+|++|++|++.+..+.+||||++.+. ....+|+++++++||.|||.|.|..... ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 456799999999999999988999999999973 2348999999999999999999963322 24689999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
++. + .+++||++.+++.++..++..+.|+.|
T Consensus 93 ~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 93 EDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 998 6 888999999999999887766666654
No 176
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.53 E-value=4.9e-14 Score=134.36 Aligned_cols=101 Identities=25% Similarity=0.441 Sum_probs=84.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~------~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|+||+.++..|.+||||++.+.+ .+++|++++++.||+|||+|.|.+.. ....|.|+|||.+.
T Consensus 16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~ 95 (138)
T cd08408 16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK 95 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC
Confidence 7999999999999999999999999999942 25799999999999999999999953 34699999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
++++++||++.+++...-.. ....|+.+..
T Consensus 96 ~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l~ 125 (138)
T cd08408 96 MKRKEMIGWFSLGLNSSGEE----EEEHWNEMKE 125 (138)
T ss_pred CCCCcEEEEEEECCcCCCch----HHHHHHHHHh
Confidence 89999999999988754211 1246776654
No 177
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=2.5e-14 Score=180.18 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=102.0
Q ss_pred CCCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-eEEeeccCCCCCCeEeEEEEEEeeCCC-CceEEEEEEEcCCCC
Q 003624 534 GDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEP-PSMLDVEVYDFDGPF 611 (807)
Q Consensus 534 ~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~v~~~~-~~~l~v~V~D~d~~~ 611 (807)
.-.|+|+|+|++|+||. +..|.+||||++++|++ ++||++++++.||+|||.|+|.+..++ ...|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 34689999999999998 44789999999999966 699999999999999999998665543 3679999999999 8
Q ss_pred CCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCce---EEEEEEEee
Q 003624 612 NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSK---LHLRIFLNN 659 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~---l~l~l~~~~ 659 (807)
++| .||+++|++.++..++....||+|.++++ ..|+ |++++.|.+
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~--k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESN--KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccc--cCCCcceEEEEEEecC
Confidence 555 99999999999988888999999986533 2445 999988863
No 178
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=8.6e-14 Score=127.79 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.6
Q ss_pred CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeEEEEeecccccccCCC
Q 003624 18 QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (807)
Q Consensus 18 ~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~ 95 (807)
.+|.+||||++.++++ ..+|++++++.||.|||.|.|.+.+. ...|.|.|||++.+ ++++||.+.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~-- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT-- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh--
Confidence 4788999999999875 57999999999999999999999654 57899999999998 8999999999999986422
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
.....||+|.+ ...|+|++++.|.+
T Consensus 86 ~~~~~w~~L~~-------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG-------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC-------CCCCEEEEEEEEec
Confidence 23579999985 24699999999965
No 179
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.4e-14 Score=137.50 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=90.7
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-----eEEeeccCCCCCCeEeEEEEEEeeCCC--CceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~v~~~~--~~~l~v~V~D~ 607 (807)
..+.|.|+|++|+||+..+..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+.... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 34679999999999999998999999999997542 378999999999999999999875542 46899999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCc
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGK 642 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k 642 (807)
+. ++++++||++.+++.+ .+...+.|++|...
T Consensus 92 ~~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DS-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 98 7889999999999998 55667899999754
No 180
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=8.2e-14 Score=161.63 Aligned_cols=107 Identities=24% Similarity=0.422 Sum_probs=92.4
Q ss_pred CCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCc
Q 003624 20 GYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLP 98 (807)
Q Consensus 20 g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~ 98 (807)
+++||||+|.++++ ..+|++++++.||+|||+|.|.+.+....|.|+|||+|.++ +++||++.|||.++..++ ..
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge---~v 150 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGE---RI 150 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCC---ce
Confidence 46799999999876 46999999999999999999999887889999999999986 689999999999996533 46
Q ss_pred cEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003624 99 TAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (807)
Q Consensus 99 ~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (807)
..|++|....+++ .+..|+|+|++.|.+....
T Consensus 151 d~Wl~Ll~~~~kp-~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 151 SGWFPVLGASGKP-PKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEccccCCCC-CCCCcEEEEEEEEEEcccc
Confidence 7999999877654 3667999999999987544
No 181
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=4.8e-14 Score=134.40 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=85.3
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC---Ce---eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN---GK---SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~---~~---~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D 606 (807)
..+.|.|+|++|+||++++..|.+||||++.+. ++ +++|+++++++||+|||+|.|++... ....|.|.|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 346799999999999999999999999999973 22 37999999999999999999998543 34589999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
+|. ++++++||++.+.+..... ...+.|+.+.
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 999 8999999999998764321 2235676664
No 182
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.52 E-value=7.7e-14 Score=133.01 Aligned_cols=89 Identities=35% Similarity=0.618 Sum_probs=78.9
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeeccCCCCCeeecEEEEEEeC--C-CCEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG--R---QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~--~---~~~kTkvi~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~ 72 (807)
.+|.|+|++|+||+..+.+|.+||||++.+. + .+.+|++++++.||.|||+|.|.+.. . ...|.|+|||++.
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~ 94 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR 94 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC
Confidence 3799999999999999989999999999983 2 35789999999999999999999842 2 4689999999999
Q ss_pred CCCCceeEEEEeecccc
Q 003624 73 YFNDDFVGFLKIPVSRV 89 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l 89 (807)
++++++||++.+++...
T Consensus 95 ~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 95 LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCcEeEEEEECCccC
Confidence 88999999999999875
No 183
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.52 E-value=3.1e-14 Score=133.31 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=81.7
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC--Ce---eEEeeccCCCC-CCeEeEEEEEEeeCC-CCceEEEEEEEc
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCN--GK---SRTSSIKFQQC-DPMWNEIFEYDAMDE-PPSMLDVEVYDF 607 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~--~~---~~~T~v~~~t~-nP~WnE~f~f~v~~~-~~~~l~v~V~D~ 607 (807)
..+.|+|+|++|+||++++..+..||||+|.+- ++ ++||+++++|+ ||.|||+|.|++..+ ....|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 457799999999999998667778999999852 33 38999999996 699999999999653 234688999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeC
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPL 639 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 639 (807)
|. .+++++||++.+...... +...+.|...
T Consensus 92 ~~-~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 92 SS-VRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CC-CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 98 889999999999986532 2233556554
No 184
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.5e-14 Score=156.38 Aligned_cols=119 Identities=25% Similarity=0.454 Sum_probs=99.8
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCC-----
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF----- 611 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~----- 611 (807)
..++++|+.|++|.++|..|+|||||.+.++..+++|+++.+.+||+|||.|+|++++. ..+|++.|||.|.-+
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999998776 679999999998511
Q ss_pred -----CCCccceeEEEEceeccCCCceeEEEeCCCcCcC-ccCceEEEEEEEe
Q 003624 612 -----NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFLN 658 (807)
Q Consensus 612 -----~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~l~~~ 658 (807)
..|||+|+..|.+..+... -+.||.|+.+... +..|-|+|.+..+
T Consensus 374 qkl~resddflgqtvievrtlsge--mdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc--hhhhcchhhccchhhccceEEEEEEEE
Confidence 3689999999999987644 4999999864332 3355555555544
No 185
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.51 E-value=1.2e-13 Score=128.60 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=84.5
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeeccCCCCCeeecEEEEEEe-CCCCEEEEEEEEcCC----C
Q 003624 6 RVIEARNIPAMDQNGYSDPYVRLQLGRQ-------RFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDK----Y 73 (807)
Q Consensus 6 ~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-------~~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~----~ 73 (807)
-.++|++|+..+..|.+||||++.+.+. ..+|++++++.||+|||+|.|.+. +....|.++|||++. +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 4588999999999999999999999654 489999999999999999999873 445789999999997 7
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEccc
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++++||++.+++.++...+ ....|+.|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEccC
Confidence 89999999999999997543 3567898843
No 186
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.51 E-value=1.2e-13 Score=129.25 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=75.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C--eEEEeeeccCCC-CCeeecEEEEEEeC--CCCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---R--QRFKTKVVRKSL-SPSWEEEFSFKVED--LKDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~---~--~~~kTkvi~~t~-nP~WnE~f~f~v~~--~~~~L~i~V~D~d~~ 73 (807)
+|.|.|++|+||+++...+..||||+|.+. + .+++|+++++++ ||+|||+|.|++.. .+-.|.|+|||++..
T Consensus 15 rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~ 94 (135)
T cd08692 15 RIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSV 94 (135)
T ss_pred eEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCC
Confidence 699999999999998666778999999983 1 468999999995 69999999999953 235788999999988
Q ss_pred CCCceeEEEEeecccc
Q 003624 74 FNDDFVGFLKIPVSRV 89 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l 89 (807)
+++++||++.++.+..
T Consensus 95 ~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 95 RRKHFLGQVWISSDSS 110 (135)
T ss_pred cCCceEEEEEECCccC
Confidence 8999999999998764
No 187
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.50 E-value=2.8e-14 Score=136.03 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=84.1
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcC
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d 608 (807)
.+.|+|+|++|+||++.+ .+.+||||++.+.. .+++|+++++++||+|||+|.|++..+ ....|.|+|||++
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 466999999999999999 88899999999642 247899999999999999999988543 2357999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
. .+++++||++.|.......+...+.|..+.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 8 889999999999865444444445566554
No 188
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.49 E-value=4.8e-14 Score=134.18 Aligned_cols=103 Identities=30% Similarity=0.467 Sum_probs=84.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC--C-CCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|++|+..+.+|.+||||++++.. .+++|++++++.||.|||+|.|.+.. . ...|.|+|||++..
T Consensus 15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~ 94 (135)
T cd08410 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVK 94 (135)
T ss_pred eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 6899999999999999999999999999832 35799999999999999999999943 2 34799999999988
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
+++++||++.|....... .....|+.|....
T Consensus 95 ~~~~~iG~~~l~~~~~~~----~~~~~W~~l~~~~ 125 (135)
T cd08410 95 SSNDFIGRIVIGQYSSGP----SETNHWRRMLNSQ 125 (135)
T ss_pred CCCcEEEEEEEcCccCCc----hHHHHHHHHHhCC
Confidence 999999999876543311 1246788887654
No 189
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.48 E-value=2.3e-13 Score=129.39 Aligned_cols=102 Identities=29% Similarity=0.543 Sum_probs=84.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~ 72 (807)
.+|+|+|++|++|++++..|.+||||++.+.. .+.+|++++++.||.|||+|.|.+... ...|.|+|||++.
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~ 93 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR 93 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 47999999999999999999999999999842 357899999999999999999998432 2469999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcccC
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~ 107 (807)
++++++||++.+++... +.....|+.+...
T Consensus 94 ~~~~~~IG~~~l~~~~~-----~~~~~~w~~~~~~ 123 (134)
T cd08403 94 VGHNELIGVCRVGPNAD-----GQGREHWNEMLAN 123 (134)
T ss_pred CCCCceeEEEEECCCCC-----CchHHHHHHHHHC
Confidence 99999999999998632 1224567776544
No 190
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.48 E-value=2.7e-13 Score=129.28 Aligned_cols=87 Identities=31% Similarity=0.444 Sum_probs=76.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeC--C-CCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVED--L-KDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~--~-~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|+||+..+ .+.+||||++.+.. .+++|++++++.||+|||.|.|.++. . ...|.|+|||.+.+
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~ 94 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV 94 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence 6899999999999998 78899999999853 36799999999999999999999943 2 36899999999988
Q ss_pred CCCceeEEEEeecccc
Q 003624 74 FNDDFVGFLKIPVSRV 89 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l 89 (807)
+++++||++.|+....
T Consensus 95 ~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 95 RKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCcceEEEEEECCccc
Confidence 9999999999986543
No 191
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.47 E-value=6.7e-14 Score=132.89 Aligned_cols=102 Identities=32% Similarity=0.526 Sum_probs=88.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----EEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-----RFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-----~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (807)
+|.|+|++|+||+..+..+.+||||++.+.+. +.+|+++.++.||.|||+|.|.+... ...|.|+|||.+.+
T Consensus 15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~ 94 (134)
T cd00276 15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV 94 (134)
T ss_pred EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence 79999999999999988889999999999542 57999999999999999999999543 47899999999988
Q ss_pred CCCceeEEEEeecccccccCCCCCccEEEEcccCC
Q 003624 74 FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKN 108 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~ 108 (807)
.++++||++.+++.+ . +.....|++|....
T Consensus 95 ~~~~~lG~~~i~l~~-~----~~~~~~W~~l~~~~ 124 (134)
T cd00276 95 GRNEVIGQVVLGPDS-G----GEELEHWNEMLASP 124 (134)
T ss_pred CCCceeEEEEECCCC-C----CcHHHHHHHHHhCC
Confidence 889999999999998 2 22357899998654
No 192
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-13 Score=151.78 Aligned_cols=125 Identities=26% Similarity=0.404 Sum_probs=106.2
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eeEEeeccCCCCCCeEeEEEEEEeeC--CCCceEEEEEEEcCCCC
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPF 611 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~v~~--~~~~~l~v~V~D~d~~~ 611 (807)
..|+|+|++|++|+++|..|.+||||++.+-. .+++|++.++|+||.|||+|.|.+.. .....|.+.|||+|+ |
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-f 245 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-F 245 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-c
Confidence 44999999999999999778899999999752 34999999999999999999998633 356789999999999 9
Q ss_pred CCCccceeEEEEceeccCCCceeEEEeCCCc--CcCccCceEEEEEEEeecCC
Q 003624 612 NEATSLGHAEINFVKSDISDLADVWIPLQGK--LAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k--~~~~~~G~l~l~l~~~~~~~ 662 (807)
++|++||.+.++|..+........|.+|... ......|+|.+.+.|....+
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9999999999999988877777899999863 22233479999999886644
No 193
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.1e-13 Score=151.43 Aligned_cols=123 Identities=33% Similarity=0.557 Sum_probs=108.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCC--------
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKY-------- 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~-------- 73 (807)
++.++|+.|.+|.++|..|++||||.+++++.+++|+++..++||+|||.|+|...+....|.+.|||+|.-
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqk 375 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQK 375 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ---CCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003624 74 ---FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (807)
Q Consensus 74 ---~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (807)
-+|||+|+..|.+..+.. ..+.||.|..+..++ .+.|-|+|++...-.+.+
T Consensus 376 l~resddflgqtvievrtlsg-----emdvwynlekrtdks--avsgairlhisveikgee 429 (1283)
T KOG1011|consen 376 LTRESDDFLGQTVIEVRTLSG-----EMDVWYNLEKRTDKS--AVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred hhhcccccccceeEEEEeccc-----chhhhcchhhccchh--hccceEEEEEEEEEcCcc
Confidence 368999999999888743 257899999988764 688999998887655433
No 194
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.45 E-value=5.8e-13 Score=124.66 Aligned_cols=90 Identities=36% Similarity=0.662 Sum_probs=79.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEE-eC---CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKV-ED---LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v-~~---~~~~L~i~V~D~d~ 72 (807)
+|.|+|++|++|+..+..+.+||||++.+. ....+|++++++.||.|||.|.|.. .. ....|.|+|||++.
T Consensus 16 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred EEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 789999999999999888999999999983 2468999999999999999999964 22 24689999999998
Q ss_pred CCCCceeEEEEeeccccccc
Q 003624 73 YFNDDFVGFLKIPVSRVFDA 92 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~ 92 (807)
+ ++++||++.++++++...
T Consensus 96 ~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 96 F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred c-CCeeEEEEEEEcccCCCC
Confidence 7 899999999999999653
No 195
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.45 E-value=4.4e-13 Score=122.14 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEc-------
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDE------- 70 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~------- 70 (807)
|.|+|.+|+||+ +.+||||++.++. .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence 689999999995 4699999999953 46999999999999999999999964 77999999998
Q ss_pred CCCCCCceeEEEEeeccc
Q 003624 71 DKYFNDDFVGFLKIPVSR 88 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~ 88 (807)
|...+|+++|.+.+.|..
T Consensus 75 d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccCcccEEEEEEEEECH
Confidence 456789999888887754
No 196
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=5.2e-13 Score=122.35 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=74.8
Q ss_pred EEEEEeEcCCCCCCCCCCCcEEEEEECCe------eEEeeccCCCCCCeEeEEEEEEee----CCCCceEEEEEEEcCCC
Q 003624 541 VALIKGDNLAAVDSSGFCDPYVVFTCNGK------SRTSSIKFQQCDPMWNEIFEYDAM----DEPPSMLDVEVYDFDGP 610 (807)
Q Consensus 541 V~vi~a~~L~~~d~~g~sDPYv~v~~~~~------~~~T~v~~~t~nP~WnE~f~f~v~----~~~~~~l~v~V~D~d~~ 610 (807)
+-.++|++|+.+|..|.+||||++.+.+. .++|+++++++||.|| .|.|.+. .+....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 34579999999999999999999997543 3899999999999999 6887652 2236789999999999
Q ss_pred CCCCccceeEEEEceeccCC
Q 003624 611 FNEATSLGHAEINFVKSDIS 630 (807)
Q Consensus 611 ~~~dd~lG~~~i~l~~l~~~ 630 (807)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 88999999999999998743
No 197
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.42 E-value=8.7e-13 Score=114.07 Aligned_cols=82 Identities=35% Similarity=0.590 Sum_probs=75.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC---eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG---KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~---~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||.|.|.+.......|.|+|||++. .++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999988889999999999987 66999999999999999999998766666779999999999 88899
Q ss_pred cceeEE
Q 003624 616 SLGHAE 621 (807)
Q Consensus 616 ~lG~~~ 621 (807)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 198
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.41 E-value=1e-12 Score=120.38 Aligned_cols=88 Identities=22% Similarity=0.485 Sum_probs=76.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe------EEEeeeccCCCCCeeecEEEEEEe-----CCCCEEEEEEEEcC
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ------RFKTKVVRKSLSPSWEEEFSFKVE-----DLKDELVISVLDED 71 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~------~~kTkvi~~t~nP~WnE~f~f~v~-----~~~~~L~i~V~D~d 71 (807)
+.+-.++|++|+..+..|.+||||++.+.+. .++|+++++++||+|| +|.|.+. +....|.|+|||++
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 3456789999999999999999999998543 5899999999999999 7888763 23679999999999
Q ss_pred CCCCCceeEEEEeecccccc
Q 003624 72 KYFNDDFVGFLKIPVSRVFD 91 (807)
Q Consensus 72 ~~~~d~~iG~v~i~L~~l~~ 91 (807)
.+++|++||++.+++.++..
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhc
Confidence 98999999999999999973
No 199
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.41 E-value=1.2e-13 Score=159.10 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=82.6
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee--EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS--RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~--~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
.+++|.|++|-+|.+.|.+|.+||||.+.+|++. .+...+.+|+||++++.|++...-+....+.++|||+|. ++.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-EAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-cccc
Confidence 5688999999999999999999999999999888 788889999999999999998877777789999999999 8999
Q ss_pred ccceeEEEEcee
Q 003624 615 TSLGHAEINFVK 626 (807)
Q Consensus 615 d~lG~~~i~l~~ 626 (807)
+.||+..|+|..
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999865
No 200
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.36 E-value=1.8e-12 Score=163.77 Aligned_cols=114 Identities=26% Similarity=0.443 Sum_probs=96.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCC--CEEEEEEEEcCCCCCCce
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLK--DELVISVLDEDKYFNDDF 78 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~--~~L~i~V~D~d~~~~d~~ 78 (807)
.|+|+|++|+||. +..|.+||||++.++++ +.||++++++.||.|||+|.|.+.++. ..|+|+|||+|.++ ++.
T Consensus 1981 ~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~-kd~ 2057 (2102)
T PLN03200 1981 SLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG-KSS 2057 (2102)
T ss_pred ceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC-CCC
Confidence 5899999999998 55789999999999966 889999999999999999998886544 77999999999985 559
Q ss_pred eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceE---EEEEEEEE
Q 003624 79 VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGE---ILLTISFS 126 (807)
Q Consensus 79 iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~---I~l~l~~~ 126 (807)
+|.+.|++.++...+ ....||+|.+++++ .|+ |++.+.+.
T Consensus 2058 ~G~~~i~l~~vv~~~---~~~~~~~L~~~~~k-----~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2058 LGKVTIQIDRVVMEG---TYSGEYSLNPESNK-----DGSSRTLEIEFQWS 2100 (2102)
T ss_pred CceEEEEHHHHhcCc---eeeeeeecCccccc-----CCCcceEEEEEEec
Confidence 999999999997533 35789999965432 466 99988874
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=4.5e-12 Score=109.57 Aligned_cols=81 Identities=40% Similarity=0.741 Sum_probs=73.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeeccCCCCCeeecEEEEEEe-CCCCEEEEEEEEcCCCCCCce
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR---QRFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~---~~~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~ 78 (807)
|+|+|++|+||+..+..+..||||++.++. ...+|+++.++.+|.|+|+|.|.+. +....|.|+|||.+...++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999976 6799999999999999999999973 344669999999999888999
Q ss_pred eEEEE
Q 003624 79 VGFLK 83 (807)
Q Consensus 79 iG~v~ 83 (807)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 202
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.29 E-value=1.9e-11 Score=108.04 Aligned_cols=100 Identities=34% Similarity=0.616 Sum_probs=88.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECC-eeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNG-KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|.|+|++|++|......+..||||.+.+.+ ...+|.++.++.||.|||.|.|.+.......|.|+|||.+. ...+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 579999999999877778899999999998 77999999999999999999998866446789999999998 6778899
Q ss_pred eeEEEEceecc-CCCceeEEEeC
Q 003624 618 GHAEINFVKSD-ISDLADVWIPL 639 (807)
Q Consensus 618 G~~~i~l~~l~-~~~~~~~w~~L 639 (807)
|++.+++.++. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999987 66667888876
No 203
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.27 E-value=7.7e-12 Score=139.92 Aligned_cols=119 Identities=22% Similarity=0.316 Sum_probs=105.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSL 617 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~l 617 (807)
|.|+|.+|+||++.+..|.+||||.|.+++.. .+|.++.+++.|-|.|.|.|.++.. -..|.|-|||.| ++.|+.|
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d--~~~D~~I 83 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD--LKRDDII 83 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc--ccccccc
Confidence 89999999999999999999999999999887 8999999999999999999977554 567999999999 4899999
Q ss_pred eeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEEeec
Q 003624 618 GHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLNNT 660 (807)
Q Consensus 618 G~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~~~~ 660 (807)
|.+.|.=.++....+.+.|+.|..-.... .+|++||++.+...
T Consensus 84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 99999888887777889999999765443 49999999998643
No 204
>PLN02223 phosphoinositide phospholipase C
Probab=99.26 E-value=4.3e-11 Score=134.34 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=96.0
Q ss_pred eEEEEEEEEeEcCCCC-----CCCCCCCcEEEEEECCee-----EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEE
Q 003624 537 WLLTVALIKGDNLAAV-----DSSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD 606 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~-----d~~g~sDPYv~v~~~~~~-----~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D 606 (807)
..|+|+|+.|++++.. +.....||||+|.+.|.. ++|++..++.||+|||+|+|.+..+.-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5699999999998521 223457999999986543 678899999999999999999977767789999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEE
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~ 657 (807)
+|. .+.|+|+|++.+|+..+..| -++++|..+.+.. ...+|.+++.+
T Consensus 489 ~D~-~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEV-STADAFCGQTCLPVSELIEG---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCC-CCCCcEEEEEecchHHhcCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 998 78899999999999999876 5889998765554 45677777765
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.19 E-value=1e-10 Score=103.77 Aligned_cols=93 Identities=30% Similarity=0.546 Sum_probs=81.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCe---eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGK---SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~---~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
|.|+|++|++|...+..+..+|||++.+.+. ..+|+++.++.||.|||.|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 7899999999999876678999999999875 6999999999999999999998766547889999999998 66788
Q ss_pred cceeEEEEceeccCCCc
Q 003624 616 SLGHAEINFVKSDISDL 632 (807)
Q Consensus 616 ~lG~~~i~l~~l~~~~~ 632 (807)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999988766543
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.19 E-value=1.6e-10 Score=102.09 Aligned_cols=100 Identities=50% Similarity=0.865 Sum_probs=86.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeeccCCCCCeeecEEEEEEeC-CCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVED-LKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-~~~kTkvi~~t~nP~WnE~f~f~v~~-~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|.|+|++|++|+.....+.++|||.+.+.. ...+|.++.++.||.|||.|.|.+.. ....|.++||+.+....+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998877777899999999987 88999999999999999999999976 6789999999999877789999
Q ss_pred EEEeecccccccCCCCCccEEEEc
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
.+.+++..+.. .......|++|
T Consensus 81 ~~~~~l~~l~~--~~~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLD--SGKEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhh--cCCcCcceecC
Confidence 99999999861 12345678765
No 207
>PLN02223 phosphoinositide phospholipase C
Probab=99.17 E-value=3.5e-10 Score=127.06 Aligned_cols=116 Identities=22% Similarity=0.316 Sum_probs=92.6
Q ss_pred EEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEEc
Q 003624 2 KLVVRVIEARNIPAM-----DQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~-----d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (807)
+|.|+|+.|.+++.. +.....||||+|.+.+ .+.+|++..++.||+|||+|.|.+..++ ..|+|+|+|+
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~ 489 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDY 489 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEec
Confidence 689999999998521 2234589999999942 4577888778999999999999996555 5799999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
|...+++|+|+..+|+..+.. +.++++|.++.+.. -..-.|.+++.+
T Consensus 490 D~~~~ddfiGQ~~LPv~~Lr~------GyR~VpL~~~~g~~--l~~~~Ll~~f~~ 536 (537)
T PLN02223 490 EVSTADAFCGQTCLPVSELIE------GIRAVPLYDERGKA--CSSTMLLTRFKW 536 (537)
T ss_pred CCCCCCcEEEEEecchHHhcC------CceeEeccCCCcCC--CCCceEEEEEEe
Confidence 988889999999999999954 67889999877643 234577777765
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=3.5e-10 Score=100.33 Aligned_cols=90 Identities=44% Similarity=0.790 Sum_probs=80.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCc
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ---RFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDD 77 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~---~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~ 77 (807)
+|.|+|++|++|......+..+|||.+.+... ..+|+++.++.||.|||+|.|.+... ...|.|+|||.+....+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 47899999999998876678999999999865 79999999999999999999999766 899999999999877789
Q ss_pred eeEEEEeecccccc
Q 003624 78 FVGFLKIPVSRVFD 91 (807)
Q Consensus 78 ~iG~v~i~L~~l~~ 91 (807)
++|.+.+++.++..
T Consensus 81 ~~G~~~~~l~~~~~ 94 (101)
T smart00239 81 FIGQVTIPLSDLLL 94 (101)
T ss_pred eeEEEEEEHHHccc
Confidence 99999999998864
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.12 E-value=3.3e-10 Score=106.23 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred EEEEEEEeEcCCCCCC--CC--CCCcEEEEEECCe---eEEeeccCCCCC--CeEeEEEEEEeeCC--------------
Q 003624 539 LTVALIKGDNLAAVDS--SG--FCDPYVVFTCNGK---SRTSSIKFQQCD--PMWNEIFEYDAMDE-------------- 595 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~--~g--~sDPYv~v~~~~~---~~~T~v~~~t~n--P~WnE~f~f~v~~~-------------- 595 (807)
|+|.|.+|+|++..+. .| .+||||++.+.+. +++|.+..+++| |.||+.|.|++.-.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 8999999999765543 56 4999999998753 399999999999 99999999887541
Q ss_pred ---------CCceEEEEEEEcCCCCCCCccceeEEEEceeccCCC
Q 003624 596 ---------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD 631 (807)
Q Consensus 596 ---------~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~ 631 (807)
....|.++|||.|. +++||+||.+++++..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 23569999999999 999999999999999876543
No 210
>PLN02952 phosphoinositide phospholipase C
Probab=99.11 E-value=5.2e-10 Score=128.38 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=92.0
Q ss_pred eEEEEEEEEeEcCCCC------CCCCCCCcEEEEEECCe-----eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEE
Q 003624 537 WLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~------d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~ 605 (807)
..|+|+|+.|++|+.. +.....||||+|.+.|. +++|+++.++.||.|||+|.|.+..+.-..+.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4699999999997532 11223599999997653 388999999999999999999987765677999999
Q ss_pred EcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEE
Q 003624 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (807)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~ 657 (807)
|+|. .+.++++|++.+++..+..|. .|++|..+.+.. ....|.+++.+
T Consensus 550 D~D~-~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDM-SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCC-CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9998 788999999999999998764 699998654432 34455555544
No 211
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.10 E-value=5.3e-10 Score=104.85 Aligned_cols=91 Identities=32% Similarity=0.449 Sum_probs=77.8
Q ss_pred EEEEEEEEeeCCCCCCC--CC--CCCcEEEEEECC---eEEEeeeccCCCC--CeeecEEEEEEeC--------------
Q 003624 2 KLVVRVIEARNIPAMDQ--NG--YSDPYVRLQLGR---QRFKTKVVRKSLS--PSWEEEFSFKVED-------------- 58 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~--~g--~~DPyv~v~l~~---~~~kTkvi~~t~n--P~WnE~f~f~v~~-------------- 58 (807)
.|+|.|.+|+|++..+. .| .+||||++.+.+ .+++|.|..+++| |.||+.|.|++.-
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 48999999999765543 56 499999999964 5699999999999 9999999998743
Q ss_pred ----------CCCEEEEEEEEcCCCCCCceeEEEEeeccccccc
Q 003624 59 ----------LKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDA 92 (807)
Q Consensus 59 ----------~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~ 92 (807)
....|.++|||.|.+++|++||++.++|..+..+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 1368999999999999999999999999988653
No 212
>PLN02270 phospholipase D alpha
Probab=99.10 E-value=6.1e-10 Score=129.92 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=101.1
Q ss_pred eEEEEEEEEeEcCCCCC------------------CCCCCCcEEEEEECCee-EEeeccCCC-CCCeEeEEEEEEeeCCC
Q 003624 537 WLLTVALIKGDNLAAVD------------------SSGFCDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEP 596 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d------------------~~g~sDPYv~v~~~~~~-~~T~v~~~t-~nP~WnE~f~f~v~~~~ 596 (807)
|.|.|+|++|++|+.++ ..+++||||.|.+++.+ -+|+++.+. .||+|||.|.+.+.. .
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah-~ 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH-M 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-C
Confidence 67999999999998631 13678999999999887 799999875 699999999997644 3
Q ss_pred CceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCcc--CceEEEEEEEeec
Q 003624 597 PSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQAC--QSKLHLRIFLNNT 660 (807)
Q Consensus 597 ~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~--~G~l~l~l~~~~~ 660 (807)
...+.|.|.|.|. ++.. +||.+.|++.++..++..+.|+++.+..++.. ..+||++++|...
T Consensus 87 ~~~v~f~vkd~~~-~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNP-IGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCc-cCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 6899999999998 6655 99999999999988888999999987665544 4588888888643
No 213
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.09 E-value=2.3e-11 Score=135.53 Aligned_cols=96 Identities=26% Similarity=0.443 Sum_probs=85.4
Q ss_pred ccCCCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee-------EEeeccCCCCCCeEeEEEEEEeeCCCCc----eE
Q 003624 532 AQGDGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS-------RTSSIKFQQCDPMWNEIFEYDAMDEPPS----ML 600 (807)
Q Consensus 532 ~~~~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~-------~~T~v~~~t~nP~WnE~f~f~v~~~~~~----~l 600 (807)
..++...|.|.|+.|+++.+-|.+|.|||||+|.++.+. .+|+|++.|+||+++|.|+|.++.+++. .+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 344567899999999999999999999999999988654 7999999999999999999999877655 49
Q ss_pred EEEEEEcCCCCCCCccceeEEEEceecc
Q 003624 601 DVEVYDFDGPFNEATSLGHAEINFVKSD 628 (807)
Q Consensus 601 ~v~V~D~d~~~~~dd~lG~~~i~l~~l~ 628 (807)
.++|+|+|- .+.+||-|.+.+.|..+.
T Consensus 1022 ~FTVMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccce-ecccccchHHHHhhCCCC
Confidence 999999998 899999999999888753
No 214
>PLN02952 phosphoinositide phospholipase C
Probab=99.08 E-value=1.3e-09 Score=125.03 Aligned_cols=116 Identities=26% Similarity=0.301 Sum_probs=90.9
Q ss_pred EEEEEEEEeeCCCCCC------CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEE
Q 003624 2 KLVVRVIEARNIPAMD------QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d------~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (807)
+|.|+|+.|.+|+... .....||||+|.+- ..+.+|+++.++.||+|||+|.|.+..++ ..|+|.|||
T Consensus 471 ~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D 550 (599)
T PLN02952 471 TLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVRE 550 (599)
T ss_pred eEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEe
Confidence 6899999999875321 12235999999993 45789999999999999999999996544 679999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 70 ~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+|....++|+|+..+||..+.. +.+|++|..+.+.. ...-.|.+++.+
T Consensus 551 ~D~~~~ddfiGq~~lPv~~Lr~------GyR~VpL~~~~G~~--l~~a~Llv~f~~ 598 (599)
T PLN02952 551 YDMSEKDDFGGQTCLPVSELRP------GIRSVPLHDKKGEK--LKNVRLLMRFIF 598 (599)
T ss_pred cCCCCCCCeEEEEEcchhHhcC------CceeEeCcCCCCCC--CCCEEEEEEEEe
Confidence 9988889999999999999964 56899998776542 223455555554
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.07 E-value=6.9e-10 Score=127.13 Aligned_cols=117 Identities=21% Similarity=0.248 Sum_probs=95.2
Q ss_pred eEEEEEEEEeEcCCCC------CCCCCCCcEEEEEECCee-----EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEE
Q 003624 537 WLLTVALIKGDNLAAV------DSSGFCDPYVVFTCNGKS-----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~------d~~g~sDPYv~v~~~~~~-----~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~ 605 (807)
.+|.|+|+.|++++.. +.....||||+|.+.|.. ++|++..++.||.|||+|+|.+..+.-..|.|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5699999999987522 222346999999975432 78889999999999999999987766788999999
Q ss_pred EcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEE
Q 003624 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (807)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~ 657 (807)
|+|. ...|+|+|++.|++..+..| -+.++|..+.+.. ...+|.+++.+
T Consensus 549 d~d~-~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDI-NEKDDFGGQTCLPVSEIRQG---IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCC-CCCCCEEEEEEcchHHhhCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9998 78999999999999999876 5688998766654 45677777765
No 216
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.05 E-value=7.5e-10 Score=126.49 Aligned_cols=117 Identities=21% Similarity=0.378 Sum_probs=97.3
Q ss_pred EEEEEEEEeEcCCCC-CC---CCCCCcEEEEEECCee-----EEee-ccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEc
Q 003624 538 LLTVALIKGDNLAAV-DS---SGFCDPYVVFTCNGKS-----RTSS-IKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDF 607 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~-d~---~g~sDPYv~v~~~~~~-----~~T~-v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~ 607 (807)
+|.|+|+.|++++.. +. ...+||||.|.+.|.. .+|+ +..++-||.|+|+|+|++..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 699999999976554 22 2468999999987765 6777 889999999999999999887788999999999
Q ss_pred CCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEEe
Q 003624 608 DGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (807)
Q Consensus 608 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~~ 658 (807)
|. .++|||+|+.++|+..+..| -+-++|..+.|.. ...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~G---yRhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQG---YRHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCc---eeeeeecCCCCccccceeEEEEEEEe
Confidence 99 88999999999999999876 5667887765544 367888888876
No 217
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.00 E-value=3.2e-09 Score=121.70 Aligned_cols=116 Identities=24% Similarity=0.299 Sum_probs=92.8
Q ss_pred EEEEEEEEeeCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEE
Q 003624 2 KLVVRVIEARNIPAM------DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~------d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (807)
+|.|+|+.+.+++.. +.....||||+|.+- ..+.+|++..++.||+|||+|.|.+.-++ ..|+|.|+|
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d 549 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHE 549 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEE
Confidence 689999999987521 122347999999993 34578999889999999999999996554 789999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 70 ~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+|...+|+|+|+..+|+..|.. +.+.++|..+.+.. -..-.|.+++.+
T Consensus 550 ~d~~~~ddfiGQ~~lPv~~Lr~------GyR~V~L~~~~G~~--l~~~~Ll~~f~~ 597 (598)
T PLN02230 550 HDINEKDDFGGQTCLPVSEIRQ------GIHAVPLFNRKGVK--YSSTRLLMRFEF 597 (598)
T ss_pred CCCCCCCCEEEEEEcchHHhhC------ccceEeccCCCcCC--CCCCeeEEEEEe
Confidence 9988899999999999999954 57789999877643 234577777765
No 218
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.98 E-value=3.8e-09 Score=121.00 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=93.5
Q ss_pred eEEEEEEEEeEcCC----CC--CCCCCCCcEEEEEECCe-----eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEE
Q 003624 537 WLLTVALIKGDNLA----AV--DSSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVY 605 (807)
Q Consensus 537 ~~L~V~vi~a~~L~----~~--d~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~ 605 (807)
..|+|+|+.|++++ .. +.....||||+|.+.|. +++|+++.++.||.|||+|+|.+..+.-..|.|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 46999999999853 11 12335699999997543 378999999999999999999987766778999999
Q ss_pred EcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEE
Q 003624 606 DFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFL 657 (807)
Q Consensus 606 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~ 657 (807)
|+|. .+.|+|+|++.+++..+..| -+.++|..+.+.. ....|.+++.+
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998 78899999999999999876 5688998765544 35677777765
No 219
>PLN02270 phospholipase D alpha
Probab=98.97 E-value=6.3e-09 Score=121.62 Aligned_cols=125 Identities=18% Similarity=0.378 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCeE-EEeeeccCC-CCCeeecEEEEEEeCCCC
Q 003624 2 KLVVRVIEARNIPAMD------------------QNGYSDPYVRLQLGRQR-FKTKVVRKS-LSPSWEEEFSFKVEDLKD 61 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d------------------~~g~~DPyv~v~l~~~~-~kTkvi~~t-~nP~WnE~f~f~v~~~~~ 61 (807)
+|.|+|++|++|+..+ ..+.+||||.|.+++.+ .+|+++.+. .||.|+|.|.+++.....
T Consensus 9 ~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~ 88 (808)
T PLN02270 9 TLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMAS 88 (808)
T ss_pred ceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcc
Confidence 5889999999998631 12468999999998765 799999884 699999999999987889
Q ss_pred EEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003624 62 ELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (807)
Q Consensus 62 ~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (807)
.+.|+|.|.|.++ ..+||.+.||+.++...+ ....||++....+++. +...+|++++.|.+...+
T Consensus 89 ~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~-~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 89 NIIFTVKDDNPIG-ATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPI-HGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred eEEEEEecCCccC-ceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcC-CCCCEEEEEEEEEEcccC
Confidence 9999999999875 569999999999997643 4789999998776542 345699999999886433
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.96 E-value=7.5e-09 Score=118.60 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=92.3
Q ss_pred EEEEEEEEeeCCC--CC----CCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEE
Q 003624 2 KLVVRVIEARNIP--AM----DQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLD 69 (807)
Q Consensus 2 ~L~V~Vi~A~~L~--~~----d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D 69 (807)
+|+|+|+.|.+++ .. +.....||||+|.+. ..+.+|+++.++.||+|||+|.|.+.-++ ..|+|.|||
T Consensus 453 ~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d 532 (581)
T PLN02222 453 TLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHE 532 (581)
T ss_pred eEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEE
Confidence 6899999998753 11 122357999999994 45689999999999999999999986554 789999999
Q ss_pred cCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEE
Q 003624 70 EDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 70 ~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
+|....++|+|+..+|+..|.. +.+.++|..+.+.. -..-.|.+++.+
T Consensus 533 ~D~~~~ddfigq~~lPv~~Lr~------GyR~V~L~~~~g~~--l~~a~Lfv~~~~ 580 (581)
T PLN02222 533 YDMSEKDDFGGQTCLPVWELSQ------GIRAFPLHSRKGEK--YKSVKLLVKVEF 580 (581)
T ss_pred CCCCCCCcEEEEEEcchhhhhC------ccceEEccCCCcCC--CCCeeEEEEEEe
Confidence 9987889999999999999954 57789998877642 234577777765
No 221
>PLN02228 Phosphoinositide phospholipase C
Probab=98.95 E-value=5.7e-09 Score=119.24 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=96.0
Q ss_pred eEEEEEEEEeEcCCC---CC---CCCCCCcEEEEEECCe-----eEEeeccCCCCCCeE-eEEEEEEeeCCCCceEEEEE
Q 003624 537 WLLTVALIKGDNLAA---VD---SSGFCDPYVVFTCNGK-----SRTSSIKFQQCDPMW-NEIFEYDAMDEPPSMLDVEV 604 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~---~d---~~g~sDPYv~v~~~~~-----~~~T~v~~~t~nP~W-nE~f~f~v~~~~~~~l~v~V 604 (807)
..|+|+|+.|++|+. .+ .....||||+|.+.|. +++|+++.++.||.| ||+|+|.+..+.-..|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999999731 11 1234799999997543 278899989999999 99999998776667899999
Q ss_pred EEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEEe
Q 003624 605 YDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (807)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~~ 658 (807)
+|+|. .+.|+++|++.|++..+..| -+.++|..+.+.. ...+|.+++.+.
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEc
Confidence 99998 78899999999999999766 5788998765554 467799999886
No 222
>PLN02228 Phosphoinositide phospholipase C
Probab=98.95 E-value=9.1e-09 Score=117.58 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=95.8
Q ss_pred CEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEC-----CeEEEeeeccCCCCCee-ecEEEEEEeCCC-CEEEEEE
Q 003624 1 MKLVVRVIEARNIPA---MD---QNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSW-EEEFSFKVEDLK-DELVISV 67 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~---~d---~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~W-nE~f~f~v~~~~-~~L~i~V 67 (807)
++|+|+|++|.+|+. .+ .....||||+|.+. ..+.+|+++.++.||+| ||+|.|.+..++ ..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998732 11 12347999999983 34679999988999999 999999996554 6899999
Q ss_pred EEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 68 LDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 68 ~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
+|+|....++|+|+..+|+..|.. +.+.++|.+..+.. -....|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~------GYR~VpL~~~~G~~--l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKS------GVRAVRLHDRAGKA--YKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhC------CeeEEEccCCCCCC--CCCeEEEEEEEEcC
Confidence 999987889999999999999953 67889998877642 34578999998864
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.92 E-value=5.1e-09 Score=119.83 Aligned_cols=117 Identities=25% Similarity=0.388 Sum_probs=94.9
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECC-----eEEEeeecc-CCCCCeeecEEEEEEeCCC-CEEEEEEEEc
Q 003624 2 KLVVRVIEARNIPAMDQ----NGYSDPYVRLQLGR-----QRFKTKVVR-KSLSPSWEEEFSFKVEDLK-DELVISVLDE 70 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~----~g~~DPyv~v~l~~-----~~~kTkvi~-~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~ 70 (807)
+|+|+|+.+.+++.... ...+||||.|++-+ .+.+|++++ ++.||.|+|+|.|.+..++ .-|++.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 59999999997755432 24489999999943 468999555 5899999999999997665 7899999999
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
|..++|+|+|+..+|+..|.. +.+-++|.++.+. .-..-.|.+++.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~------GyRhVpL~~~~G~--~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ------GYRHVPLLSREGE--ALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhC------ceeeeeecCCCCc--cccceeEEEEEEEe
Confidence 998999999999999999953 5678999987665 24567888888774
No 224
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=4.3e-09 Score=114.83 Aligned_cols=122 Identities=16% Similarity=0.380 Sum_probs=98.3
Q ss_pred eEEEEEEEEeEcCCCCCC-CCCCCcEEEEEECCeeEEeeccCCCCCCeEe-EEEEEEeeCC--CCceEEEEEEEcCCCCC
Q 003624 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTCNGKSRTSSIKFQQCDPMWN-EIFEYDAMDE--PPSMLDVEVYDFDGPFN 612 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~~~~~~~T~v~~~t~nP~Wn-E~f~f~v~~~--~~~~l~v~V~D~d~~~~ 612 (807)
|.|-|+|..|++||-+|. ....|.||.+++++..++|.+-.+++||.|| +.|.|++.+. ..+.|.|.+.|+|. .+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 568999999999999986 4578999999999999999999999999999 8899988543 45679999999999 99
Q ss_pred CCccceeEEEEceeccC----------CCceeEEEeCCCcCcCccCceEEEEEEEeec
Q 003624 613 EATSLGHAEINFVKSDI----------SDLADVWIPLQGKLAQACQSKLHLRIFLNNT 660 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~----------~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~ 660 (807)
.+|-||.+.|+++.+.. +.....|+|+.+.-. .-.|+|.+-+....-
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkvdlf 138 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEEeeh
Confidence 99999999999977432 223367999975321 135666666654433
No 225
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=6.2e-09 Score=123.29 Aligned_cols=119 Identities=34% Similarity=0.523 Sum_probs=97.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEe-CCCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|.|.+..|.||+..|.+|.+||||++.++.. .++|+++++|+||+|||+|..+|. .....+.+.|+|||.-.+++.||
T Consensus 1042 l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg 1121 (1227)
T COG5038 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLG 1121 (1227)
T ss_pred EEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccc
Confidence 7899999999999999999999999999776 699999999999999999999995 66789999999999888999999
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
.+.++|+.+.... ....-.+|..+. .....|.++....+-+
T Consensus 1122 ~~~idL~~l~~~~---~~n~~i~ldgk~---~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1122 TAEIDLSKLEPGG---TTNSNIPLDGKT---FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred cccccHhhcCcCC---ccceeeeccCcc---eEecccEeecceecch
Confidence 9999999996422 122234444332 1245677776666643
No 226
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.84 E-value=8.5e-10 Score=123.32 Aligned_cols=119 Identities=32% Similarity=0.628 Sum_probs=99.5
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------------------------------EEEeeeccCCCCCeeecEE
Q 003624 4 VVRVIEARNIPAMDQNGYSDPYVRLQLGRQ-------------------------------RFKTKVVRKSLSPSWEEEF 52 (807)
Q Consensus 4 ~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~-------------------------------~~kTkvi~~t~nP~WnE~f 52 (807)
.|.+.+|+||.+++.+|.+|||+...+... -+-|.|+++|+||.|+|.|
T Consensus 117 ~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF 196 (1103)
T KOG1328|consen 117 NISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKF 196 (1103)
T ss_pred HHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhhe
Confidence 456678999999999999999999887210 1457788899999999999
Q ss_pred EEEEeCCC-CEEEEEEEEcCC---------------------------------CC---CCceeEEEEeecccccccCCC
Q 003624 53 SFKVEDLK-DELVISVLDEDK---------------------------------YF---NDDFVGFLKIPVSRVFDADNK 95 (807)
Q Consensus 53 ~f~v~~~~-~~L~i~V~D~d~---------------------------------~~---~d~~iG~v~i~L~~l~~~~~~ 95 (807)
.|.|.+.+ ..+++.+||+|. -+ .|||+|++.|||.++...
T Consensus 197 ~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~--- 273 (1103)
T KOG1328|consen 197 QFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD--- 273 (1103)
T ss_pred eeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc---
Confidence 99997764 799999999986 12 378999999999999542
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
.-++||+|++++.++ +++|.++|.+.+...
T Consensus 274 -Gld~WFkLepRS~~S--~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 274 -GLDQWFKLEPRSDKS--KVQGQVKLKLWLSTK 303 (1103)
T ss_pred -hHHHHhccCcccccc--cccceEEEEEEEeee
Confidence 357999999998764 799999999999875
No 227
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.82 E-value=1.6e-08 Score=89.26 Aligned_cols=84 Identities=23% Similarity=0.384 Sum_probs=72.5
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCce
Q 003624 3 LVVRVIEARNIPAMD---QNGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF 78 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d---~~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~ 78 (807)
|.|+|.+|+|+.-.. ..+.+||||.+.++.. +.+|++. .||.|||+|.|++ +...++.+.|||... ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V-dk~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV-EKNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe-cCCcEEEEEEEeCCC-Ceecc
Confidence 689999999998777 5678999999999876 8999884 7999999999999 458899999999876 45568
Q ss_pred eEEEEeecccccc
Q 003624 79 VGFLKIPVSRVFD 91 (807)
Q Consensus 79 iG~v~i~L~~l~~ 91 (807)
||..-++++++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998864
No 228
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.80 E-value=2.3e-08 Score=113.31 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=92.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeE-EEeeeccCCCCCeee-cEEEEEEeCCC-CEEEEEEEEcCC
Q 003624 1 MKLVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQR-FKTKVVRKSLSPSWE-EEFSFKVEDLK-DELVISVLDEDK 72 (807)
Q Consensus 1 m~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~-~kTkvi~~t~nP~Wn-E~f~f~v~~~~-~~L~i~V~D~d~ 72 (807)
|+|.|.|+.||+|+..+ .|.+-|||.|.+- ..+ ++|.|+.+++||+|| |.|+|.+.+++ ..|++.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 78999999999999654 3456699999983 234 555566678999999 99999997665 789999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
++...|||++..|+..+.. +.+-++|.. +.+++-....|.+.+..-+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~------GfRsVpLkN--~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS------GFRSVPLKN--GYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhc------cceeeeccc--CchhhhhhhhheeeeEeccc
Confidence 9988899999999999853 345566654 33444566777777776543
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.7e-08 Score=89.01 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=68.9
Q ss_pred EEEEEEEeEcCCCCC---CCCCCCcEEEEEECCe-eEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCC
Q 003624 539 LTVALIKGDNLAAVD---SSGFCDPYVVFTCNGK-SRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 539 L~V~vi~a~~L~~~d---~~g~sDPYv~v~~~~~-~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~d 614 (807)
|+|+|..|+|+...+ ..+.+||||.|.+++. +.+|++ +.||.|||+|+|++. ....+.+.|||... +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC--Cee
Confidence 689999999999888 5788999999999988 577777 489999999999883 37799999999876 555
Q ss_pred ccceeEEEEceec
Q 003624 615 TSLGHAEINFVKS 627 (807)
Q Consensus 615 d~lG~~~i~l~~l 627 (807)
-.||-.-+.++++
T Consensus 74 ~Pi~llW~~~sdi 86 (109)
T cd08689 74 VPVGLLWLRLSDI 86 (109)
T ss_pred cceeeehhhHHHH
Confidence 5788887877764
No 230
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.78 E-value=1.3e-08 Score=111.11 Aligned_cols=121 Identities=30% Similarity=0.567 Sum_probs=101.9
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECCeEEEeeeccCCCCCeee-cEEEEEEeCC---CCEEEEEEEEcCCCCCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGRQRFKTKVVRKSLSPSWE-EEFSFKVEDL---KDELVISVLDEDKYFND 76 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~~~~kTkvi~~t~nP~Wn-E~f~f~v~~~---~~~L~i~V~D~d~~~~d 76 (807)
+|.|+|..||+||.+|.. ...|.||.+.+++..++|.|..+++||+|| +-|.|+|.+. .+.|.|.+.|+|.++.+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysan 83 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSAN 83 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccc
Confidence 588999999999999974 458999999999999999999999999999 5599999653 47899999999999999
Q ss_pred ceeEEEEeecccccccC-------CCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 77 DFVGFLKIPVSRVFDAD-------NKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 77 ~~iG~v~i~L~~l~~~~-------~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
|-||.+.|.+..+...+ .+.....|+++.+.-. ..+|+|.+-+...
T Consensus 84 daigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih----girgeinvivkvd 136 (1169)
T KOG1031|consen 84 DAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH----GIRGEINVIVKVD 136 (1169)
T ss_pred cccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc----cccceeEEEEEEe
Confidence 99999999998886422 2234568999998653 5689998777654
No 231
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.73 E-value=3.8e-08 Score=111.50 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=108.6
Q ss_pred CeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC------eeEEeeccCCCCCCeEe-EEEEEEeeCCCCceEEEEEEEcC
Q 003624 536 GWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG------KSRTSSIKFQQCDPMWN-EIFEYDAMDEPPSMLDVEVYDFD 608 (807)
Q Consensus 536 ~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~------~~~~T~v~~~t~nP~Wn-E~f~f~v~~~~~~~l~v~V~D~d 608 (807)
...|.|.|+.|+.|+... .|..-|||+|.+-| +.++|.++.+++||+|| |.|+|++.++.-..|.+.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 367999999999999654 45667999999643 33888899999999999 99999999888889999999999
Q ss_pred CCCCCCccceeEEEEceeccCCCceeEEEeCCCcCc-CccCceEEEEEEEeecCCCchhh-----hhhhhhhhhccccc-
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLA-QACQSKLHLRIFLNNTKGSNVVK-----EYLTKMEKEVGKKI- 681 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~-~~~~G~l~l~l~~~~~~~~~~~~-----~~l~~~e~~vg~k~- 681 (807)
. ++...|||+++.|+..+..| -.-+||..+-. .-.-..|.+.+.+-+..+.+... ..-.|.+...|..+
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~~~~~~~~~sS~~~lr~R~~~~ngqlf~ 1218 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPVLESEEELYSSCRQLRRRQEELNGQLFL 1218 (1267)
T ss_pred c-cCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccccCccccccchhHHHHHHHhhhcCCeec
Confidence 9 88888999999999988765 45678853211 12234455555554333333211 11223333334322
Q ss_pred -cccCCCcccccccccC
Q 003624 682 -NLRSPQTNSAFQKLFG 697 (807)
Q Consensus 682 -~~~s~~~n~~f~~~F~ 697 (807)
..+.+-+|+..++.|+
T Consensus 1219 ~~~~~~lr~s~~d~~~~ 1235 (1267)
T KOG1264|consen 1219 YDTHQNLRNSNRDALVK 1235 (1267)
T ss_pred hhhhhhhhhcccccccc
Confidence 3344455666666664
No 232
>PLN02352 phospholipase D epsilon
Probab=98.51 E-value=6.3e-07 Score=104.97 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=88.2
Q ss_pred eEEEEEEEEeEcCCCC----CCC-CCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCC
Q 003624 537 WLLTVALIKGDNLAAV----DSS-GFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGP 610 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~----d~~-g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~ 610 (807)
|.|.++|.+|+-+... +.. ...||||.|.+++.+ .+| .+..||.|||.|.+.+.......+.|.|.|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--- 83 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK--- 83 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC---
Confidence 6799999999843332 111 123999999999877 566 5566999999999987555446899999882
Q ss_pred CCCCccceeEEEEceeccCCCc-eeEEEeCCCcCcCccCc-eEEEEEEEeec
Q 003624 611 FNEATSLGHAEINFVKSDISDL-ADVWIPLQGKLAQACQS-KLHLRIFLNNT 660 (807)
Q Consensus 611 ~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~k~~~~~~G-~l~l~l~~~~~ 660 (807)
..+||.+.|++.++..++. .+.|+++.+..++...| +||++++|...
T Consensus 84 ---~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ---CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 4599999999999887755 89999998766655544 88888888644
No 233
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.3e-07 Score=98.45 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=116.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEE--eC-C-CCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKV--ED-L-KDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v--~~-~-~~~L~i~V~D~d~ 72 (807)
.+.+++..|++|.+++.++..|||+++.++. .+.+|++..+++||.|+|+-.... .+ . ...+++.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 3678999999999999999999999999964 347888999999999998876654 22 1 3688999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEE--cccCC-CCCCCCcceEEEEEEEEEecCCCCCccCCCCCcccccCCCC
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHS--LQPKN-KKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKTTES 149 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~--L~~~~-~~~~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (807)
+..++++|+.++++..+...+... ...|+. +.+.. .......+|+|.+++.|... -+...+..++|.++
T Consensus 174 ~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~-------~~~l~vt~iRc~~l 245 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLPSERADRDEDEERGAILISLAYSST-------TPGLIVTIIRCSHL 245 (362)
T ss_pred cccccCcccchhhhhccChhhcch-hhhhhhccCCcccccccchhhccceeeeeccCcC-------CCceEEEEEEeeee
Confidence 999999999999999987544322 223332 22111 11123568999999998432 23456677899999
Q ss_pred CCCCCCCCCCCCCCC
Q 003624 150 PKRSFSGPSNAPSPV 164 (807)
Q Consensus 150 ~~~s~~~~s~~~s~~ 164 (807)
.++++++.+..+...
T Consensus 246 ~ssDsng~sDpyvS~ 260 (362)
T KOG1013|consen 246 ASSDSNGYSDPYVSQ 260 (362)
T ss_pred eccccCCCCCcccee
Confidence 999999999876443
No 234
>PLN02352 phospholipase D epsilon
Probab=98.30 E-value=5.5e-06 Score=97.24 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=89.5
Q ss_pred EEEEEEEEeeCCCCC----CCC-CCCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCC-CEEEEEEEEcCCCC
Q 003624 2 KLVVRVIEARNIPAM----DQN-GYSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLK-DELVISVLDEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~----d~~-g~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~-~~L~i~V~D~d~~~ 74 (807)
+|.++|.+|+-+... +.. ...||||.|.+++.+ .+| .+..||.|+|.|.+++.... ..+.|+|.|
T Consensus 11 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----- 82 (758)
T PLN02352 11 TLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT----- 82 (758)
T ss_pred ceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-----
Confidence 588999999843221 111 113999999998765 577 55679999999999996655 789999988
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCC
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSS 131 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~ 131 (807)
...+||.+.||+.++...+. ....||++....+++. . ..+|++++.|.+...+
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~--~~~~~~~~~~~~~~p~-~-~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS--FINGFFPLIMENGKPN-P-ELKLRFMLWFRPAELE 135 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc--ccceEEEcccCCCCCC-C-CCEEEEEEEEEEhhhC
Confidence 36799999999999976432 2689999998877643 2 2699999999886444
No 235
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=98.16 E-value=7.4e-07 Score=100.43 Aligned_cols=100 Identities=22% Similarity=0.237 Sum_probs=79.6
Q ss_pred ccCCCcccccccccCCCccccccceEEEEEee---ccccceeEEeecCeeeeecCCCCceeEEEEecccceeeEecCCCc
Q 003624 683 LRSPQTNSAFQKLFGLPPEEFLINDFTCHLKR---KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSL 759 (807)
Q Consensus 683 ~~s~~~n~~f~~~F~lp~~e~l~~~~~c~l~~---~~~~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~ 759 (807)
+..+.+++.| ..|.|| |++.....|.+|. +.+.+||||+|++|+||+|..+. -+.+++|+..|..|++.+ .-
T Consensus 4 l~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~-~s 78 (671)
T KOG4347|consen 4 LDARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLD-DS 78 (671)
T ss_pred hhhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccC-cc
Confidence 3457788999 999999 9999999999998 56799999999999999999877 489999999999999998 22
Q ss_pred cCCCCceEEEEeecccccccCCCceEeecCCceEEEEeeecccccc
Q 003624 760 SSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNVA 805 (807)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~~~~~ 805 (807)
+- ++.-|++.+.+...|.|..+..|++.
T Consensus 79 s~------------------~~~~i~~~~~~~~~~~f~~~~~r~~~ 106 (671)
T KOG4347|consen 79 SL------------------FTQLISLFTSNMVGMRFGGLTERLKL 106 (671)
T ss_pred cc------------------chhhhHHhhcCcceEEecchhhHHHH
Confidence 21 22333343445567888888777654
No 236
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.11 E-value=1.4e-06 Score=101.81 Aligned_cols=86 Identities=29% Similarity=0.523 Sum_probs=78.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeeccCCCCCeeecEEEEEEe-CCCCEEEEEEEEcCCCCCCcee
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR--FKTKVVRKSLSPSWEEEFSFKVE-DLKDELVISVLDEDKYFNDDFV 79 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~--~kTkvi~~t~nP~WnE~f~f~v~-~~~~~L~i~V~D~d~~~~d~~i 79 (807)
++|+|++|-+|.+.|.+|.+|||+.+.++++. -++..+.+++||+|++.|.+... +....+.++|||+|.+++|+.|
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~i 694 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKI 694 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchh
Confidence 67999999999999999999999999999876 77888999999999999999874 4568999999999999999999
Q ss_pred EEEEeeccc
Q 003624 80 GFLKIPVSR 88 (807)
Q Consensus 80 G~v~i~L~~ 88 (807)
|+..+.|+.
T Consensus 695 get~iDLEn 703 (1105)
T KOG1326|consen 695 GETTIDLEN 703 (1105)
T ss_pred hceehhhhh
Confidence 999998754
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.96 E-value=7.3e-06 Score=96.99 Aligned_cols=103 Identities=28% Similarity=0.423 Sum_probs=85.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEe---C-CCCEEEEEEEEcCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVE---D-LKDELVISVLDEDK 72 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~---~-~~~~L~i~V~D~d~ 72 (807)
+|.|.|.-|++|+-......+||||+.++.+ .++||+++++|.||.|||...+.-- . ..+.|.++||..+.
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~ 1604 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG 1604 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc
Confidence 6889999999997666566799999999953 3699999999999999999988731 2 24899999999999
Q ss_pred CCCCceeEEEEeecccccccCCCCCccEEEEcccC
Q 003624 73 YFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPK 107 (807)
Q Consensus 73 ~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~ 107 (807)
+..+.++|.+.|||.++...+ ....||.|...
T Consensus 1605 ~~en~~lg~v~i~L~~~~l~k---E~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1605 LLENVFLGGVNIPLLKVDLLK---ESVGWYNLGAC 1636 (1639)
T ss_pred eeeeeeeeeeecchhhcchhh---hhcceeecccc
Confidence 899999999999999985422 23589999753
No 238
>PLN02964 phosphatidylserine decarboxylase
Probab=97.92 E-value=1.2e-05 Score=93.85 Aligned_cols=90 Identities=12% Similarity=0.254 Sum_probs=75.9
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEE-EEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCC
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYV-VFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv-~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~ 613 (807)
-.|+..+++++|+ |+ ..|||. ++++|.+.++|.+.++|+||+|||...|.+.+......++.|||++. +++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR-LSK 123 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-CCH
Confidence 4589999999998 44 369975 56689999999999999999999999998866656668999999999 999
Q ss_pred CccceeEEEEceeccCCCc
Q 003624 614 ATSLGHAEINFVKSDISDL 632 (807)
Q Consensus 614 dd~lG~~~i~l~~l~~~~~ 632 (807)
++++|.++++|.++...+.
T Consensus 124 n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHhhhheeecHhhccHHHH
Confidence 9999999998877655443
No 239
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.89 E-value=8.2e-06 Score=96.56 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=87.1
Q ss_pred CCeEEEEEEEEeEcCCCCCCCCCCCcEEEEEECC-----eeEEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEE
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG-----KSRTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYD 606 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~-----~~~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D 606 (807)
..++|+|-|..|++|+-..-+...||||+.++-. .++||+++.+|.||.+||..+.+-.+ ...++|.+.||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4688999999999996554466789999999741 12899999999999999999876222 234689999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCC
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQ 640 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 640 (807)
.+. +..+.++|.+.|+|.++........||+|.
T Consensus 1602 ~~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccc-eeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 998 888999999999999988777667999995
No 240
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=2.4e-05 Score=81.82 Aligned_cols=85 Identities=32% Similarity=0.476 Sum_probs=73.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCC---CCEEEEEEEEcCCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKY 73 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~ 73 (807)
.|.|+++++..|..+|.+|-+||||...+.. .+.+|.+.+++++|.+|++|.|.+.+. ...+.|.|||.+..
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G 313 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG 313 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC
Confidence 3789999999999999999999999999852 468999999999999999999999543 47899999999987
Q ss_pred CCCceeEEEEeec
Q 003624 74 FNDDFVGFLKIPV 86 (807)
Q Consensus 74 ~~d~~iG~v~i~L 86 (807)
...+++|-+..-+
T Consensus 314 ~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 314 KSNDSIGGSMLGG 326 (362)
T ss_pred cCccCCCcccccc
Confidence 7889998766543
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.65 E-value=0.00015 Score=66.22 Aligned_cols=100 Identities=22% Similarity=0.414 Sum_probs=75.7
Q ss_pred EEEEEEEeeCCCCCC-----------C--CCCCCcEEEEEE----CCeEEEeeeccCCCCCeeecEEEEEEe--------
Q 003624 3 LVVRVIEARNIPAMD-----------Q--NGYSDPYVRLQL----GRQRFKTKVVRKSLSPSWEEEFSFKVE-------- 57 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d-----------~--~g~~DPyv~v~l----~~~~~kTkvi~~t~nP~WnE~f~f~v~-------- 57 (807)
|.|.|++|.||.+.- . .-.-++||++.+ +++.++|+++.++-.|.|+..++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888998885321 1 112689999996 356799999999999999999999873
Q ss_pred C--------CCCEEEEEEEEcCCC----------CCCceeEEEEeecccccccCCCCCccEEEEc
Q 003624 58 D--------LKDELVISVLDEDKY----------FNDDFVGFLKIPVSRVFDADNKSLPTAWHSL 104 (807)
Q Consensus 58 ~--------~~~~L~i~V~D~d~~----------~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L 104 (807)
. ...++.++||+...- .+|-.||.+.||+.+|... +..-.+||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~--rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK--RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc--ccCccccccC
Confidence 1 035899999997742 2456899999999999863 3346789975
No 242
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00018 Score=76.72 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=87.0
Q ss_pred EEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eEEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEE-EcCCCC
Q 003624 2 KLVVRVIEARNIPAMDQN-GYSDPYVRLQLGR-----QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVL-DEDKYF 74 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~-g~~DPyv~v~l~~-----~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~-D~d~~~ 74 (807)
+|.|.|++|++|..+-.. ..++|||+|++.. .+.+|+...++.+|-+.+...|.-.++...|.+.|| |...+.
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd 349 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMD 349 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccc
Confidence 578999999999776543 2599999999953 358888999999999989999988888999999999 677777
Q ss_pred CCceeEEEEeecccccccCCCCCccEEEEcccCCC
Q 003624 75 NDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNK 109 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~ 109 (807)
.+.|+|.+++-+.++-... .+...||+|.+.+.
T Consensus 350 ~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgsss 382 (405)
T KOG2060|consen 350 HKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSSS 382 (405)
T ss_pred hHHHhhHHHHHhhhhcccc--ccceeeeeccCCcc
Confidence 8889999999999885322 25779999997653
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=97.20 E-value=0.00042 Score=81.17 Aligned_cols=84 Identities=19% Similarity=0.426 Sum_probs=69.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcE-EEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC-CCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPY-VRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL-KDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPy-v~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~-~~~L~i~V~D~d~~~~d~~iG 80 (807)
..+++++|+ ++ ..||| +.+++|.+.++|.+.++|.||+||+...|.|.+. ....++.|||++.++.++++|
T Consensus 56 ~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~ 128 (644)
T PLN02964 56 ALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVG 128 (644)
T ss_pred EEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhh
Confidence 456777776 33 35885 5667799999999999999999999999999443 356799999999999999999
Q ss_pred EEEeecccccccC
Q 003624 81 FLKIPVSRVFDAD 93 (807)
Q Consensus 81 ~v~i~L~~l~~~~ 93 (807)
.++++|.++...+
T Consensus 129 ~~e~~~t~f~~kq 141 (644)
T PLN02964 129 YCELDLFDFVTQE 141 (644)
T ss_pred heeecHhhccHHH
Confidence 9999998886543
No 244
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.11 E-value=0.00069 Score=76.42 Aligned_cols=87 Identities=18% Similarity=0.364 Sum_probs=68.7
Q ss_pred EEEEEeEcCCCCCCCCCCCcEEEEE--EC-Cee---EEeeccCCCCCCeEeEEEEEEe----eCCCCceEEEEEEEcCCC
Q 003624 541 VALIKGDNLAAVDSSGFCDPYVVFT--CN-GKS---RTSSIKFQQCDPMWNEIFEYDA----MDEPPSMLDVEVYDFDGP 610 (807)
Q Consensus 541 V~vi~a~~L~~~d~~g~sDPYv~v~--~~-~~~---~~T~v~~~t~nP~WnE~f~f~v----~~~~~~~l~v~V~D~d~~ 610 (807)
.-.++|++|..+|..+++|||..+. ++ +.. ++|.++++++||.|-+ |.+.. ..++...+.+.+||+|.
T Consensus 140 ~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~- 217 (529)
T KOG1327|consen 140 QFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS- 217 (529)
T ss_pred eeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC-
Confidence 3345689999999999999999888 32 222 8999999999999964 22222 23456789999999999
Q ss_pred CCCCccceeEEEEceeccC
Q 003624 611 FNEATSLGHAEINFVKSDI 629 (807)
Q Consensus 611 ~~~dd~lG~~~i~l~~l~~ 629 (807)
.+++++||++..++.++..
T Consensus 218 ~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 218 NGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCcCceeEecccHHHhcc
Confidence 7888999999998888754
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.00 E-value=0.00078 Score=61.70 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=72.5
Q ss_pred EEEEEEEeEcCCCCCC-------------CCCCCcEEEEEEC----CeeEEeeccCCCCCCeEeEEEEEEeeC----C--
Q 003624 539 LTVALIKGDNLAAVDS-------------SGFCDPYVVFTCN----GKSRTSSIKFQQCDPMWNEIFEYDAMD----E-- 595 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~-------------~g~sDPYv~v~~~----~~~~~T~v~~~t~nP~WnE~f~f~v~~----~-- 595 (807)
|.|.|++|.+|.+.-. .=.-++||.+.+. ++.++|+++-++-.|.||..++|.+.- +
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 3567777777764411 1125899999942 445999999999999999999997641 0
Q ss_pred ---------CCceEEEEEEEcCCCC---------CCCccceeEEEEceec-cCCCceeEEEeC
Q 003624 596 ---------PPSMLDVEVYDFDGPF---------NEATSLGHAEINFVKS-DISDLADVWIPL 639 (807)
Q Consensus 596 ---------~~~~l~v~V~D~d~~~---------~~dd~lG~~~i~l~~l-~~~~~~~~w~~L 639 (807)
....+.++||..+... .+|-.||.+.||+.++ ....+...|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2356999999976411 2345899999999994 445556889985
No 246
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.85 E-value=0.00093 Score=71.90 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=89.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeeccCCCCCeeecEEEEEEeC---C---------CCEEEE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG-----RQRFKTKVVRKSLSPSWEEEFSFKVED---L---------KDELVI 65 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-----~~~~kTkvi~~t~nP~WnE~f~f~v~~---~---------~~~L~i 65 (807)
|.+.|+++.+++........|-|+++++- .++.+|.+++++.+|.|+|.|.+.+.. . ...+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 44567777777665433346778888872 467899999999999999999999944 1 257899
Q ss_pred EEEEcCCC-CCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 66 SVLDEDKY-FNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 66 ~V~D~d~~-~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
+||++..| .+|.++|.+.+-|..|. +.......++|.+.. ..+.|.|.+.++.-.
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Le---n~cei~e~~~l~DGR----K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILE---NMCEICEYLPLKDGR----KAVGGKLEVKVRIRQ 504 (523)
T ss_pred EEeeccccccccceeceeeeeehhhh---cccchhhceeccccc----cccCCeeEEEEEEec
Confidence 99998865 57889999999988874 333445678887654 367899999998753
No 247
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.82 E-value=0.0022 Score=72.51 Aligned_cols=85 Identities=26% Similarity=0.453 Sum_probs=70.0
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEC--C----eEEEeeeccCCCCCeeecEEEEEE-----eCCCCEEEEEEEEcCCCC
Q 003624 6 RVIEARNIPAMDQNGYSDPYVRLQLG--R----QRFKTKVVRKSLSPSWEEEFSFKV-----EDLKDELVISVLDEDKYF 74 (807)
Q Consensus 6 ~Vi~A~~L~~~d~~g~~DPyv~v~l~--~----~~~kTkvi~~t~nP~WnE~f~f~v-----~~~~~~L~i~V~D~d~~~ 74 (807)
-.++|++|..++.++++|||..+.-- . ..++|.+++++++|.|.+ |.+.+ .+.+..+.+.+||++.-+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34568999999999999999888652 2 349999999999999964 55544 244688999999999988
Q ss_pred CCceeEEEEeecccccc
Q 003624 75 NDDFVGFLKIPVSRVFD 91 (807)
Q Consensus 75 ~d~~iG~v~i~L~~l~~ 91 (807)
++++||.+..++..+..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 88999999999999854
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.80 E-value=0.0013 Score=70.79 Aligned_cols=125 Identities=15% Similarity=0.201 Sum_probs=94.2
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEC-----CeeEEeeccCCCCCCeEeEEEEEEeeCCCC-----------ceE
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCN-----GKSRTSSIKFQQCDPMWNEIFEYDAMDEPP-----------SML 600 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~-----~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~-----------~~l 600 (807)
..|.+.|+++.+++.....---|-||.+.+. .++-+|.+++.|..|.++|.|.+++...+. .-+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 4578888999888765322234678888853 234789999999999999999998855322 228
Q ss_pred EEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEeecCC
Q 003624 601 DVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 601 ~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~~~ 662 (807)
.|+||.+...+.+|.++|.+.+.+..+...-.....++|.+. .+..+|+|.+++.+.+.-+
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR~Pi~ 507 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-RKAVGGKLEVKVRIRQPIG 507 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-ccccCCeeEEEEEEecccc
Confidence 999999988557788999999999888766555677888642 2446899999999875543
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.0019 Score=69.17 Aligned_cols=105 Identities=19% Similarity=0.322 Sum_probs=83.9
Q ss_pred eEEEEEEEEeEcCCCCCC-CCCCCcEEEEEE-CCee----EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEE-cCC
Q 003624 537 WLLTVALIKGDNLAAVDS-SGFCDPYVVFTC-NGKS----RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYD-FDG 609 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~-~g~sDPYv~v~~-~~~~----~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D-~d~ 609 (807)
|.|.|.|++|++|..+-. ...++|||.|++ ++.. .+|+...+|++|.+-+...|+-. ++...|.+.||- +.+
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdygR 347 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDYGR 347 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccccc
Confidence 569999999999988743 337899999995 3322 78899999999998888888543 346789999995 344
Q ss_pred CCCCCccceeEEEEceeccCCC-ceeEEEeCCCcC
Q 003624 610 PFNEATSLGHAEINFVKSDISD-LADVWIPLQGKL 643 (807)
Q Consensus 610 ~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~k~ 643 (807)
...+.|+|.+.|.+.++.... ....||+|.+..
T Consensus 348 -md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 348 -MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred -cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 677789999999999988777 678999998743
No 250
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.33 E-value=0.046 Score=59.66 Aligned_cols=121 Identities=13% Similarity=0.232 Sum_probs=94.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeC-------CCCceEEEEEEEcCCCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-------EPPSMLDVEVYDFDGPF 611 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~-------~~~~~l~v~V~D~d~~~ 611 (807)
+.|+|++|+|.+... .-.-.+..+++|....|..+.++-.|.||..+.+++.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999998862 34556778899999999999999999999999997632 24567999999999325
Q ss_pred CCCccceeEEEEceec---cCC--CceeEEEeCCCc--CcCccCceEEEEEEEeecCC
Q 003624 612 NEATSLGHAEINFVKS---DIS--DLADVWIPLQGK--LAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l---~~~--~~~~~w~~L~~k--~~~~~~G~l~l~l~~~~~~~ 662 (807)
+..+.||.+.++|..+ ..+ .....||+|-+- .-....-+|.|.+.++....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999887 444 456889999875 22334667888887765443
No 251
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.29 E-value=0.026 Score=54.28 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred eEEEEEEEEeEcCCCCCCC--CCCCcE--EEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCC-------------Cce
Q 003624 537 WLLTVALIKGDNLAAVDSS--GFCDPY--VVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEP-------------PSM 599 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~--g~sDPY--v~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~-------------~~~ 599 (807)
..|.|+|+.|+-....... |..+.- +-+.+++|+++|+.+..+.+|.++|.|-|++..+. .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 3488999998865443211 444444 44558899999999999999999999999986542 456
Q ss_pred EEEEEEEcCCCCCCCccceeEEEEceeccCCCce--eEEEeCCCcCcC--ccCceEEEEEEEee
Q 003624 600 LDVEVYDFDGPFNEATSLGHAEINFVKSDISDLA--DVWIPLQGKLAQ--ACQSKLHLRIFLNN 659 (807)
Q Consensus 600 l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~--~~w~~L~~k~~~--~~~G~l~l~l~~~~ 659 (807)
|++-|.-.|. .+...++|.-.+++..+...+.. ..-+.|.|..+. ...|-|.|++.+-.
T Consensus 89 ihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 8888988887 66668999999999886555544 334455554333 35899999998753
No 252
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.15 E-value=0.0061 Score=52.03 Aligned_cols=85 Identities=16% Similarity=0.295 Sum_probs=63.4
Q ss_pred EEEEEEeeCCCCCCCCCCCCc--EEEE--EEC-CeEEEeeeccCCCCCeeecEEEEEEe--C-CCCEEEEEEEEcCCCCC
Q 003624 4 VVRVIEARNIPAMDQNGYSDP--YVRL--QLG-RQRFKTKVVRKSLSPSWEEEFSFKVE--D-LKDELVISVLDEDKYFN 75 (807)
Q Consensus 4 ~V~Vi~A~~L~~~d~~g~~DP--yv~v--~l~-~~~~kTkvi~~t~nP~WnE~f~f~v~--~-~~~~L~i~V~D~d~~~~ 75 (807)
-++|+.++||.....-| -+| |++= ++. ....+|.+.....||.|.|+|.|.+. . ..-.|.+.|+.. ..+
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPR 78 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCc
Confidence 37899999997655433 234 4442 233 34689999999999999999999983 2 246899999993 357
Q ss_pred CceeEEEEeecccccc
Q 003624 76 DDFVGFLKIPVSRVFD 91 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~ 91 (807)
.+.||.+.+.++++-.
T Consensus 79 Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 79 KRTIGECSLSLRTLST 94 (103)
T ss_pred cceeeEEEeecccCCH
Confidence 7899999999998754
No 253
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.99 E-value=0.099 Score=57.11 Aligned_cols=121 Identities=18% Similarity=0.370 Sum_probs=94.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCCeeecEEEEEEeC--------CCCEEEEEEEEcC-CC
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVED--------LKDELVISVLDED-KY 73 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~--------~~~~L~i~V~D~d-~~ 73 (807)
+.|+|++|+|.+... ...-.+...++++...|-.+..+-.|.||.+..++++. ....|.+++|..| .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 34568888999999999999999999999999999842 2468999999988 43
Q ss_pred CCCceeEEEEeecccc---cccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 74 FNDDFVGFLKIPVSRV---FDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 74 ~~d~~iG~v~i~L~~l---~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
...+.||.+.++|..+ .. .+....+.||+|..-+.+ -.+..-+|.|.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~-~~~~~~~~W~~LL~~~~~-y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQE-KNQKQKPKWYKLLSSSSK-YKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccc-cccccCCCeeEccccccc-cccCCccEEEEEEEecc
Confidence 6678999999999998 32 222467899999976332 12345788888888654
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.99 E-value=0.014 Score=68.40 Aligned_cols=111 Identities=24% Similarity=0.384 Sum_probs=81.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeeccC-CCCCeeecE-EEEEE--eCCCCEEEEEEEEc
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG-------RQRFKTKVVRK-SLSPSWEEE-FSFKV--EDLKDELVISVLDE 70 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~-------~~~~kTkvi~~-t~nP~WnE~-f~f~v--~~~~~~L~i~V~D~ 70 (807)
++.|+||++.=|..++ ...||.|.+- ...++|+++.+ +.||+|+|+ |.|.- -+.-..|+|.||++
T Consensus 704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 6889999999997664 4489999983 24588888876 699999966 88863 34447899999997
Q ss_pred CCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 71 DKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 71 d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
.. .+||+-.+|+..+. .+...+.|......+ .....|.+.+.+...
T Consensus 780 gg----K~ig~RIlpvd~l~------~GYrhv~LRse~Nqp--l~lp~Lfv~i~~kdy 825 (1189)
T KOG1265|consen 780 GG----KFIGQRILPVDGLN------AGYRHVCLRSESNQP--LTLPALFVYIVLKDY 825 (1189)
T ss_pred CC----ceeeeeccchhccc------CcceeEEecCCCCCc--cccceeEEEEEeecc
Confidence 64 69999999999884 356778888765432 233556666655433
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.96 E-value=0.036 Score=65.19 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=79.9
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCe-------eEEee-ccCCCCCCeEe-EEEEEEe-eCCCCceEEEEEEE
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGK-------SRTSS-IKFQQCDPMWN-EIFEYDA-MDEPPSMLDVEVYD 606 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~-------~~~T~-v~~~t~nP~Wn-E~f~f~v-~~~~~~~l~v~V~D 606 (807)
+.+.|+||+|.-|..++ ..-||.|.+-|- .++|+ +..++.||+|| |.|.|.- .-+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 67999999999998775 348999995332 24444 45789999999 5688854 33445679999999
Q ss_pred cCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcCcCc-cCceEEEEEEEe
Q 003624 607 FDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKLAQA-CQSKLHLRIFLN 658 (807)
Q Consensus 607 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~-~~G~l~l~l~~~ 658 (807)
..+ .+||+-.+++..+..| ...+.|....++. .-..|.+.+.+.
T Consensus 779 Egg-----K~ig~RIlpvd~l~~G---Yrhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 779 EGG-----KFIGQRILPVDGLNAG---YRHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred cCC-----ceeeeeccchhcccCc---ceeEEecCCCCCccccceeEEEEEee
Confidence 765 4899999999998876 5667776554432 245667766654
No 256
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.94 E-value=0.0056 Score=52.26 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=67.1
Q ss_pred EEEEEEeEcCCCCCCCCCCCc--EEE--EEECCee-EEeeccCCCCCCeEeEEEEEEeeC--CCCceEEEEEEEcCCCCC
Q 003624 540 TVALIKGDNLAAVDSSGFCDP--YVV--FTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMD--EPPSMLDVEVYDFDGPFN 612 (807)
Q Consensus 540 ~V~vi~a~~L~~~d~~g~sDP--Yv~--v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~--~~~~~l~v~V~D~d~~~~ 612 (807)
-|+|+.+++|.-....| -+| |+. +++.... .||+++....||.++|+|.|.+.- -+...|.+.|+.. ..
T Consensus 2 witv~~c~d~s~~~~~~-e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCG-ENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccC-cCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc---CC
Confidence 47899999997654433 345 443 3344333 899999999999999999998733 3455688999983 35
Q ss_pred CCccceeEEEEceeccCCCceeEEEe
Q 003624 613 EATSLGHAEINFVKSDISDLADVWIP 638 (807)
Q Consensus 613 ~dd~lG~~~i~l~~l~~~~~~~~w~~ 638 (807)
+..-||.+.+.+.++..++ .+.|..
T Consensus 78 RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCHHH-hhhhhc
Confidence 6679999999998875432 344543
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.58 E-value=0.15 Score=49.57 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=60.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~ 609 (807)
++|+|++|.++.-.+ .+|-||.+. .|++. ..|+.+.. .+|.|||..+|++.- +....|.|+||+...
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 899999999998753 478898886 35554 34444433 689999999998732 345689999999764
Q ss_pred CCC----CCccceeEEEEceec
Q 003624 610 PFN----EATSLGHAEINFVKS 627 (807)
Q Consensus 610 ~~~----~dd~lG~~~i~l~~l 627 (807)
-. ..-.+|.+.++|-+.
T Consensus 86 -~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 86 -RKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred -ccCCCCceEEEEEEEEEEECC
Confidence 11 124689988888663
No 258
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.55 E-value=0.2 Score=48.24 Aligned_cols=122 Identities=23% Similarity=0.293 Sum_probs=84.6
Q ss_pred EEEEEEEeeCCCCCCCC--CCCCc--EEEEEECCeEEEeeeccCCCCCeeecEEEEEEeCC--------------CCEEE
Q 003624 3 LVVRVIEARNIPAMDQN--GYSDP--YVRLQLGRQRFKTKVVRKSLSPSWEEEFSFKVEDL--------------KDELV 64 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~--g~~DP--yv~v~l~~~~~kTkvi~~t~nP~WnE~f~f~v~~~--------------~~~L~ 64 (807)
|+++|+.++-....-.. +..+. .+-+.+++++++|+.+..+.+|.++|.|.|++... ...|+
T Consensus 11 L~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pih 90 (156)
T PF15627_consen 11 LHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIH 90 (156)
T ss_pred EEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceE
Confidence 67778877654221111 33333 34445589999999999999999999999999322 35788
Q ss_pred EEEEEcCCCCCCceeEEEEeecccccccCCCCCccEEEEcc--cCCCCCCCCcceEEEEEEEEEec
Q 003624 65 ISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQ--PKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 65 i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~--~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
+.|--.|..+...++|.-.+....++..+.+. .++.++ ...... ....|-|.+++.+.+.
T Consensus 91 ivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~-kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 91 IVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPES-KVPVGILDLRLELLPN 152 (156)
T ss_pred EEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCC-ccceeEEEEEEEeecC
Confidence 88888777666689999999999988655432 134443 333221 3578999999999765
No 259
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.38 E-value=0.24 Score=48.26 Aligned_cols=84 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeecEEEEEE--e--CCCCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkvi~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (807)
.++|+|++|.+++..+ .+|-||.+++ +++. ..|+.+.. .++.|||-..|++ . +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 4789999999998653 4688999877 4432 34444433 6799999999988 3 33579999999965
Q ss_pred CCC----CCceeEEEEeecccc
Q 003624 72 KYF----NDDFVGFLKIPVSRV 89 (807)
Q Consensus 72 ~~~----~d~~iG~v~i~L~~l 89 (807)
.-. ....||.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 311 224699999988774
No 260
>PF14470 bPH_3: Bacterial PH domain
Probab=95.07 E-value=0.14 Score=45.14 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=62.6
Q ss_pred CCccccccceEEEEEee-ccccceeEEeecCeeeeecCC-CCceeEEEEecccceeeEecCCCccCCCCceEEEEeeccc
Q 003624 698 LPPEEFLINDFTCHLKR-KMLLQGRLFLSARIIGFHANL-FGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGR 775 (807)
Q Consensus 698 lp~~e~l~~~~~c~l~~-~~~~~g~lyls~~~~cf~s~~-~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~~~~~~ 775 (807)
|.++|.+.....|.+.. .-...|-+++|...+=|++.- ++......|||++|++|+..+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~------------------- 61 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKK------------------- 61 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEc-------------------
Confidence 45678888888887763 344559999999999888774 666888899999999999987
Q ss_pred ccccCCCceEeecCCceEEEEeeec
Q 003624 776 GMDARHGAKTQDEEGRLKFHFHSFV 800 (807)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~f~sf~ 800 (807)
++ ..+.|.+.+.++ ++.|.++-
T Consensus 62 g~--~~~~i~i~~~~~-~~~i~~i~ 83 (96)
T PF14470_consen 62 GI--LGGKITIETNGE-KIKIDNIQ 83 (96)
T ss_pred cc--cccEEEEEECCE-EEEEEEcC
Confidence 22 457788877454 99998873
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.07 E-value=0.14 Score=50.68 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=59.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~ 609 (807)
++|+|+.+.+|... ...++-||.+. .|++. ..|+.+.-..++.|||.++|++.- +....|.|.||+...
T Consensus 10 f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 10 FSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred EEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 89999999999872 23466677764 46665 466666556779999999998732 345679999999754
Q ss_pred CCC----------------CCccceeEEEEcee
Q 003624 610 PFN----------------EATSLGHAEINFVK 626 (807)
Q Consensus 610 ~~~----------------~dd~lG~~~i~l~~ 626 (807)
.. .+..||.+.++|-+
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 88 -KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred -cccccccccccccccccCcceEEEEEeEEEEc
Confidence 11 13467777777655
No 262
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.01 E-value=0.11 Score=51.41 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=59.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeecEEEEEE--e--CCCCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkvi~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (807)
+++|+|+.+.+|...+ ...+-||.+++ |++. ..|+.+.-+.++.|||.+.|++ . +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 4789999999998622 34667887766 4432 4565555457799999999987 3 33579999999865
Q ss_pred CCC----------------CCceeEEEEeecccc
Q 003624 72 KYF----------------NDDFVGFLKIPVSRV 89 (807)
Q Consensus 72 ~~~----------------~d~~iG~v~i~L~~l 89 (807)
.-. ....||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 321 135777777776653
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.61 E-value=0.19 Score=48.84 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=61.4
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~ 609 (807)
++|++....++...+ ....+-||.+. .|++. ..|.......++.|||..+|++.- +....|.|.||+.+.
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 788888888887622 23456677765 45654 455555444789999999998622 345679999999876
Q ss_pred CCC--CCccceeEEEEceec
Q 003624 610 PFN--EATSLGHAEINFVKS 627 (807)
Q Consensus 610 ~~~--~dd~lG~~~i~l~~l 627 (807)
.. .+..||.+.++|-+.
T Consensus 89 -~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 -PGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred -CCCCcceEEEEEeEEeEcc
Confidence 33 457899999998764
No 264
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=94.04 E-value=0.069 Score=48.35 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=55.0
Q ss_pred ccceEEEEEee-ccccceeEEeecCeeeeecC---------------CCCceeEEEEecccceeeEecCCCccCCCCceE
Q 003624 704 LINDFTCHLKR-KMLLQGRLFLSARIIGFHAN---------------LFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVI 767 (807)
Q Consensus 704 l~~~~~c~l~~-~~~~~g~lyls~~~~cf~s~---------------~~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~ 767 (807)
++-.+.|.+-. ...++|.|.|+.+++.|..+ .-.......+|+.||..|.+..
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR----------- 70 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR----------- 70 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE-----------
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH-----------
Confidence 45678899888 66789999999999999876 3333455679999999998875
Q ss_pred EEEeecccccccCCCceEe-ecCCceEEE--EeeeccccccC
Q 003624 768 VMTLRQGRGMDARHGAKTQ-DEEGRLKFH--FHSFVSYNVAH 806 (807)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--f~sf~~~~~~~ 806 (807)
....+.|++| -.+|+ .|+ |.+.-.||++|
T Consensus 71 ---------yllr~~AlEiF~~dg~-s~f~~F~~~~~R~~v~ 102 (106)
T PF14844_consen 71 ---------YLLRDTALEIFFSDGR-SYFFNFESKKERDEVY 102 (106)
T ss_dssp ---------ETTEEEEEEEEETTS--EEEEE-SSHHHHHHHH
T ss_pred ---------hcCcceEEEEEEcCCc-EEEEEcCCHHHHHHHH
Confidence 4457899999 33454 443 33445566554
No 265
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.78 E-value=0.51 Score=46.05 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=52.4
Q ss_pred CCCCcEEEEE--ECCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcCCCCCCCccceeEEEEcee
Q 003624 556 GFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDGPFNEATSLGHAEINFVK 626 (807)
Q Consensus 556 g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~ 626 (807)
..+|-||.+. .+++. ..|+.+.-+..+.|||...|++.- +....|.|+|||.+. .++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 4577888876 35554 456666666778999999998732 346689999999886 4566789999998866
Q ss_pred c
Q 003624 627 S 627 (807)
Q Consensus 627 l 627 (807)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
No 266
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.78 E-value=0.3 Score=47.50 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=60.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeeccCCCCCeeecEEEEEE--e--CCCCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQ----RFKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~----~~kTkvi~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (807)
.++|++....++...+ ....+-||.+++ +++ ...|.......++.|||...|++ . +.+..|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4778888888876521 234667777766 443 23444443346899999999987 2 34579999999977
Q ss_pred CCC--CCceeEEEEeecccc
Q 003624 72 KYF--NDDFVGFLKIPVSRV 89 (807)
Q Consensus 72 ~~~--~d~~iG~v~i~L~~l 89 (807)
... .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 533 457899999998774
No 267
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.50 E-value=0.31 Score=48.25 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee----EEeeccC----CCCCCeEeEEEEEEeeC---CCCceEEEEE
Q 003624 538 LLTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKF----QQCDPMWNEIFEYDAMD---EPPSMLDVEV 604 (807)
Q Consensus 538 ~L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~----~t~nP~WnE~f~f~v~~---~~~~~l~v~V 604 (807)
.+.|+|..+.+++........|-||.+. .|++. ..|+... -...+.|||..+|++.- +....|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 4899999999999886555688888876 46665 3444321 22357899999998732 3456799999
Q ss_pred EEcCCCCC---------CCccceeEEEEceec
Q 003624 605 YDFDGPFN---------EATSLGHAEINFVKS 627 (807)
Q Consensus 605 ~D~d~~~~---------~dd~lG~~~i~l~~l 627 (807)
|+... .. .+..||.+.++|-+.
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTS-SPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEec-CCccccccccccceEEEEEeEeeEcc
Confidence 99765 32 345788888887663
No 268
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.49 E-value=2.7 Score=39.91 Aligned_cols=117 Identities=23% Similarity=0.308 Sum_probs=77.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE---EEeeecc-CCCCCeeecEEEEEEe----C-----CCCEEEEEEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQR---FKTKVVR-KSLSPSWEEEFSFKVE----D-----LKDELVISVL 68 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~---~kTkvi~-~t~nP~WnE~f~f~v~----~-----~~~~L~i~V~ 68 (807)
++.++|.+..++|.. ....||....++.. ..|.... .+..-.|||+|.+.+. . ....+.+.|+
T Consensus 8 ~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 577899999999872 24456666666543 4444433 3556789999999872 1 1357889998
Q ss_pred EcCCCCCCceeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 69 DEDKYFNDDFVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 69 D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
....-++...+|.+.|+|.++.... ......-++|... ......|.+++.+...
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~~~-~~~~~~~~~l~~~-----~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYANED-EEPITVRLLLKKC-----KKSNATLSISISLSEL 137 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhCcC-CCcEEEEEeCccC-----CCCCcEEEEEEEEEEC
Confidence 8753233368999999999997632 1223345666543 1456788888888654
No 269
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.36 E-value=2 Score=40.91 Aligned_cols=119 Identities=21% Similarity=0.341 Sum_probs=78.1
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCee----EEeeccCCCCCCeEeEEEEEEeeC---C-----CCceEEEEE
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---E-----PPSMLDVEV 604 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~-----~~~~l~v~V 604 (807)
..+.|+|.+..+++.. ..--||....++.. .+......+-.-.|||.|.+.+.- . ..-.+.|.|
T Consensus 7 f~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4588999999999871 23345555556543 233333445567899999997631 1 123488899
Q ss_pred EEcCCCCCCCccceeEEEEceeccCC--CceeEEEeCCCcCcCccCceEEEEEEEeecCC
Q 003624 605 YDFDGPFNEATSLGHAEINFVKSDIS--DLADVWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 605 ~D~d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~k~~~~~~G~l~l~l~~~~~~~ 662 (807)
+..+. -++...+|.+.|+|.+.... .....-++|.+. ......|+|.+.+..-++
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE 139 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence 88743 23335899999999997653 445666777654 345668888888765443
No 270
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.19 E-value=0.19 Score=52.73 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCeEEEEEEEEeEcCCCCCC--CCCCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCC
Q 003624 535 DGWLLTVALIKGDNLAAVDS--SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF 611 (807)
Q Consensus 535 ~~~~L~V~vi~a~~L~~~d~--~g~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~ 611 (807)
-.|+|.++++++++|.-... +-+-+-||++.++.+. -+|.+.....-=.|.|+|+.++.+ ...+++-||.|+. -
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p-q 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP-Q 125 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc-h
Confidence 45889999999999975532 4457899999999776 677777777777899999998875 3489999999997 4
Q ss_pred CCCccceeEEEEceeccCCCceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 612 NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
-++.+.-..-+.+..+.. +..+.-+.|.- ...|.+-+++-+.
T Consensus 126 ~RHKLC~~g~l~~~~v~r-qspd~~~Al~l----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 126 RRHKLCHLGLLEAFVVDR-QSPDRVVALYL----EPRGQPPLRLPLA 167 (442)
T ss_pred hhccccccchhhhhhhhh-cCCcceeeeec----ccCCCCceecccC
Confidence 555554333344333322 22233333321 1235566666554
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.26 E-value=0.49 Score=46.84 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=62.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeecc--C--CCCCeeecEEEEEEe----CCCCEEEEEE
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVR--K--SLSPSWEEEFSFKVE----DLKDELVISV 67 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkvi~--~--t~nP~WnE~f~f~v~----~~~~~L~i~V 67 (807)
.+.|+|.++.+++........|-|+.+++ |.+. ..|+... + ...+.|||...|++. +.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999998765556788998877 4432 3444322 1 235779999999882 3357999999
Q ss_pred EEcCCCC---------CCceeEEEEeecccc
Q 003624 68 LDEDKYF---------NDDFVGFLKIPVSRV 89 (807)
Q Consensus 68 ~D~d~~~---------~d~~iG~v~i~L~~l 89 (807)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976533 346888888888664
No 272
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.11 E-value=1.6 Score=37.92 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCccE
Q 003624 22 SDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPTA 100 (807)
Q Consensus 22 ~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~~ 100 (807)
.+..+.+.+++. ..+|.-.. ..+..|+|.|.+++. -.++|.|.||-.|. ..+-|..-+.|.+... ..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~~-------~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDERH-------EV 76 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhcc-------cc
Confidence 677889999875 45555433 457889999999994 46899999997764 2355555666666321 22
Q ss_pred EEEcccCCCCCCCCcceEEEEEEEE
Q 003624 101 WHSLQPKNKKSKNKDCGEILLTISF 125 (807)
Q Consensus 101 w~~L~~~~~~~~~~~~G~I~l~l~~ 125 (807)
-.+|. +.|.+...+.|
T Consensus 77 ~~~le---------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME---------PQLCLVAELTF 92 (98)
T ss_pred eeccc---------cccEEEEEEEe
Confidence 23443 46777777776
No 273
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.66 E-value=0.57 Score=45.72 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--CCeE----EEeeeccCCCCCeeecEEEEEE--e--CCCCEEEEEEEEcCCCCCCceeEEEEeecccc
Q 003624 20 GYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDEDKYFNDDFVGFLKIPVSRV 89 (807)
Q Consensus 20 g~~DPyv~v~l--~~~~----~kTkvi~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l 89 (807)
..+|-||.+++ +++. ..|+.+.-+..+.|||-..|++ . +.+..|.|+|||.+.-.....||.+.++|-+.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34788999877 4332 3555555566789999999998 2 34689999999987644567899999988663
No 274
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=91.52 E-value=2.1 Score=37.24 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=60.0
Q ss_pred CCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEE
Q 003624 558 CDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVW 636 (807)
Q Consensus 558 sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w 636 (807)
++-.+++.++++. ..|..+. -.+..|++.|.++... ..+|.|.||-+|- ..+.|-..+.|.+.. +..-
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~----RslCav~~lrLEd~~----~~~~ 77 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW----RSLCAVKFLKLEDER----HEVQ 77 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc----hhhhhheeeEhhhhc----ccce
Confidence 7788999998876 6666653 3688999999997643 6789999998885 347787777777732 2334
Q ss_pred EeCCCcCcCccCceEEEEEEE
Q 003624 637 IPLQGKLAQACQSKLHLRIFL 657 (807)
Q Consensus 637 ~~L~~k~~~~~~G~l~l~l~~ 657 (807)
++|+ .+|.+..++.|
T Consensus 78 ~~le------pqg~l~~ev~f 92 (98)
T cd08687 78 LDME------PQLCLVAELTF 92 (98)
T ss_pred eccc------cccEEEEEEEe
Confidence 4553 46778887776
No 275
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=91.11 E-value=12 Score=36.42 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=97.0
Q ss_pred eeEEecChhchhcccCCCCCcccHHHHHhcCCcceeecccccCCCCCceEEEEEEEeecC-------cCC-ceeeEeEEE
Q 003624 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-------KLI-KATKGFEEQ 328 (807)
Q Consensus 257 d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~tY~~~~~-------~~~-k~~~~te~q 328 (807)
...|+.++++++.++.++ .|+....+..+..+.....-....++ ...++.-..+.. +.+ .....++++
T Consensus 4 ~~~~~~~~~~v~~~~~d~--~y~~~r~~~~g~~~~~~~~~~~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDE--DYWEARCAALGADNAEVESFEVDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred EEEcCCCHHHHHHHHcCH--HHHHHHHHHcCCCCceEEEEEEcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 456999999999999964 68888888877755555544333333 222222222321 122 467788888
Q ss_pred EEEeeCCceEEEEEEEeCCCCCCCCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHH
Q 003624 329 TYLKADGKVFAILASVSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETY 408 (807)
Q Consensus 329 ~~~~~~~~~~~v~~~~~tpdVP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~ 408 (807)
+....++..+....++..+ |.+..+.-.+.+.+ +...|++.+...+.-.- .+|-++||+-+...+...+
T Consensus 80 ~w~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~~ 148 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIP----GAPVSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKLL 148 (159)
T ss_pred EEecCCCCeEEEEEEEEec----CceEEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHHH
Confidence 8855566777776666665 66677777888874 45678887777765432 5899999999998887777
Q ss_pred HHHHHHHh
Q 003624 409 EQFATFLS 416 (807)
Q Consensus 409 ~~~~~~l~ 416 (807)
..-.+...
T Consensus 149 ~~e~~~~~ 156 (159)
T PF10698_consen 149 EAEQEFTA 156 (159)
T ss_pred HHHHHHHH
Confidence 66555443
No 276
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.07 E-value=1.8 Score=43.02 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=44.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee---EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS---RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFD 608 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~---~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d 608 (807)
++|+|..+.++ ..+.....--||.+. .|++. ..|+.+.-+.+|.|||.+.|++.- +....|.|.||+..
T Consensus 12 friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 78888888743 332222223455543 24443 356666667789999999998732 34668999999974
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.45 E-value=2.3 Score=40.58 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=39.1
Q ss_pred EeeccCCC-CCCeEeEEEEEEeeC---CCCceEEEEEEEcCCCCCCC----ccceeEEEEceec
Q 003624 572 TSSIKFQQ-CDPMWNEIFEYDAMD---EPPSMLDVEVYDFDGPFNEA----TSLGHAEINFVKS 627 (807)
Q Consensus 572 ~T~v~~~t-~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~~~~~d----d~lG~~~i~l~~l 627 (807)
.|+...-+ .+|.|||.++|++.- +....|.|.||+.+. .... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECC
Confidence 55555555 799999999998732 446789999999887 3433 5899999888764
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.40 E-value=2.2 Score=42.45 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=44.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE---EEeeeccCCCCCeeecEEEEEE--eC--CCCEEEEEEEEcC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR---FKTKVVRKSLSPSWEEEFSFKV--ED--LKDELVISVLDED 71 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~---~kTkvi~~t~nP~WnE~f~f~v--~~--~~~~L~i~V~D~d 71 (807)
.++|+|..+.+ +..+......-||.+++ ++.. .+|+...-+.+|.|||-+.|++ .+ ....|.|+||+..
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 36788888863 33332322335666654 4332 3555555567899999999988 33 3579999999964
No 279
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=87.32 E-value=2.5 Score=36.94 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=38.5
Q ss_pred ceeEEeecCeeeeecCCCCceeEEEEecccceeeEecCCCccCCCCceEEEEee
Q 003624 719 QGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLR 772 (807)
Q Consensus 719 ~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~~~ 772 (807)
.|++|||...||+.-........+.||+.+|..++.....+ -.||=|++.++
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~--~sSpKI~l~l~ 88 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL--KSSPKIILHLK 88 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT--SSS-EEEEEES
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc--CCCCeEEEEec
Confidence 69999999999997655554557999999999998877444 35677777664
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=86.86 E-value=4.1 Score=38.88 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=40.1
Q ss_pred EEeeeccCC-CCCeeecEEEEEEe----CCCCEEEEEEEEcCCCCCC----ceeEEEEeecccc
Q 003624 35 FKTKVVRKS-LSPSWEEEFSFKVE----DLKDELVISVLDEDKYFND----DFVGFLKIPVSRV 89 (807)
Q Consensus 35 ~kTkvi~~t-~nP~WnE~f~f~v~----~~~~~L~i~V~D~d~~~~d----~~iG~v~i~L~~l 89 (807)
..|+...-+ .++.|||.+.|++. +.+..|.|+||..+..... ..||.+.++|-+.
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 356655555 79999999999982 3467999999997764444 6899999998775
No 281
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.85 E-value=4.6 Score=36.04 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=48.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEE--ECCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEcCC
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFT--CNGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDFDG 609 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~--~~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~d~ 609 (807)
+.+++...++.........+|-||.+. .|++. ..|+.+.-...+.|||..+|++.- +....|.+.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 566777777776654333368888886 45554 456655556669999999997632 345679999998653
No 282
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=83.95 E-value=2 Score=45.40 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=69.4
Q ss_pred EEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-EEEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCce-
Q 003624 3 LVVRVIEARNIPAMDQ--NGYSDPYVRLQLGRQ-RFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDF- 78 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~--~g~~DPyv~v~l~~~-~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~- 78 (807)
|.++++.+|+|..... .-.-+-||++..+.+ +.+|.+-....--.|.|+|..++.+ ...+.+-||.|+.-.++++
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC 131 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRRHKLC 131 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhhcccc
Confidence 6789999999964433 345678999998754 5666665555666899999998853 4678888998886444443
Q ss_pred -eEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 79 -VGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 79 -iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
.| .+.+..+.. .....-+.|+- ..+|++-+++.+.
T Consensus 132 ~~g--~l~~~~v~r----qspd~~~Al~l-------ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 132 HLG--LLEAFVVDR----QSPDRVVALYL-------EPRGQPPLRLPLA 167 (442)
T ss_pred ccc--hhhhhhhhh----cCCcceeeeec-------ccCCCCceecccC
Confidence 34 233333322 11232333332 3467777777763
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.85 E-value=5.7 Score=35.49 Aligned_cols=69 Identities=28% Similarity=0.403 Sum_probs=45.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeeccCCCCCeeecEEEEEE--e--CCCCEEEEEEEEcC
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQL--GRQR----FKTKVVRKSLSPSWEEEFSFKV--E--DLKDELVISVLDED 71 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l--~~~~----~kTkvi~~t~nP~WnE~f~f~v--~--~~~~~L~i~V~D~d 71 (807)
+.+++..+.+.+.......++-||.+++ |++. ..|+.+.-...+.|||...|++ . +.+..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556667776655433223578899877 4432 3455444456689999999987 2 34579999999854
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.51 E-value=6.5 Score=39.32 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=32.4
Q ss_pred EEeeccCCCCCCeEeEEEEEEeeCCC--CceEEEEEEEcCCCCC-CC--ccceeEEEEcee
Q 003624 571 RTSSIKFQQCDPMWNEIFEYDAMDEP--PSMLDVEVYDFDGPFN-EA--TSLGHAEINFVK 626 (807)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~v~~~~--~~~l~v~V~D~d~~~~-~d--d~lG~~~i~l~~ 626 (807)
+.|.+..++.+|.|+|+|.++++.+. ..-|.+++++... -. ++ ..+|-+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~-~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSC-KESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE----SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecc-ccccCccceeEEEEEEeee
Confidence 78899999999999999999886643 4568899998765 22 11 477777777766
No 285
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.48 E-value=9 Score=38.53 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=39.0
Q ss_pred EEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCC-CCC---ceeEEEEeecc
Q 003624 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-FND---DFVGFLKIPVS 87 (807)
Q Consensus 34 ~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~-~~d---~~iG~v~i~L~ 87 (807)
..+|.|...+.+|.|+|++.+.++. .+.-|.+++++...- .+| ..+|.+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 5788888889999999999999943 357899999875421 122 35666666664
No 286
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=74.90 E-value=14 Score=36.96 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=38.1
Q ss_pred EEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCC-C-CceeEEEEeecc
Q 003624 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N-DDFVGFLKIPVS 87 (807)
Q Consensus 34 ~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~-~-d~~iG~v~i~L~ 87 (807)
..+|.|...+.+|.|+|++.+.++. ...-|.+++++...-. . ...+|-+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4788888889999999999999943 3568889888744211 1 145666666653
No 287
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.21 E-value=9.5 Score=38.11 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=32.5
Q ss_pred EEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCCC-C--CceeEEEEeeccc
Q 003624 34 RFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYF-N--DDFVGFLKIPVSR 88 (807)
Q Consensus 34 ~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~-~--d~~iG~v~i~L~~ 88 (807)
...|.+...+.+|.|+|+|.+.++. .+.-|.+++++...-. + ...+|.+-+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3677777788999999999999943 2468999999865321 1 1578888888766
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=72.52 E-value=19 Score=35.45 Aligned_cols=68 Identities=12% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCcEEEEEECCe-EEEeeeccCC--CCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeeccccc
Q 003624 22 SDPYVRLQLGRQ-RFKTKVVRKS--LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVF 90 (807)
Q Consensus 22 ~DPyv~v~l~~~-~~kTkvi~~t--~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~ 90 (807)
..-|+++.++++ ..+|+...-+ ..-.+||.|.+.+....+.|.++||.... ..+..|+++.+|+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 456899999765 4666554432 33468999999998888999999999887 67889999999987754
No 289
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=71.97 E-value=23 Score=30.18 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=37.6
Q ss_pred EEEEeeccccceeEEeecCe--eeeecCCCCceeEEEEecccceeeEecCCCccCCCCceEEEE
Q 003624 709 TCHLKRKMLLQGRLFLSARI--IGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMT 770 (807)
Q Consensus 709 ~c~l~~~~~~~g~lyls~~~--~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~ 770 (807)
.|.+.++- |.|||++.+ +-.--+--+....+.||+.+|+..+-.+. |+|-+++.
T Consensus 6 ~~~yKK~~---G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~-----~s~Kv~Lk 61 (79)
T PF08567_consen 6 AASYKKKD---GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE-----GSPKVMLK 61 (79)
T ss_dssp EEEETTEE---EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T-----TSSTEEEE
T ss_pred eEEEEcCC---cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC-----CCcceEEE
Confidence 46666554 999999998 77766543333479999999999998883 45555553
No 290
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=70.05 E-value=7.1 Score=47.27 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCcEEEEEECCee-EEeeccCCC-CCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeE
Q 003624 558 CDPYVVFTCNGKS-RTSSIKFQQ-CDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADV 635 (807)
Q Consensus 558 sDPYv~v~~~~~~-~~T~v~~~t-~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 635 (807)
+++|+.+.+.... .+|....+. .+|.|.+.|+... ......+.+.|-+.+. .+-...+|.+.+++..+..+...+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~-~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGF-AHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccc-cccccEEEEeecCCcc-ccceeEEEEeccchhhhhccccccc
Confidence 6999999998766 667777666 7999999998744 3345678889988876 6656799999999999888777889
Q ss_pred EEeCCCcCcCcc--CceEEEEEEEe
Q 003624 636 WIPLQGKLAQAC--QSKLHLRIFLN 658 (807)
Q Consensus 636 w~~L~~k~~~~~--~G~l~l~l~~~ 658 (807)
|+++....+... ...+++++.+.
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeE
Confidence 999875433322 33455555544
No 291
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=69.46 E-value=11 Score=37.70 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=37.7
Q ss_pred EEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCCCCCCC--ccceeEEEEce
Q 003624 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA--TSLGHAEINFV 625 (807)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~~~~~d--d~lG~~~i~l~ 625 (807)
++|.+..++.+|.|||++.+.++.+ ...-|.++++.... ..+. ..+|-+.++|-
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~-~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST-KDKGEKKLFGFSFVPLM 112 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee-ccCCCCCceEEEEEeec
Confidence 7899999999999999999988654 34558887777443 1111 34565555553
No 292
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.52 E-value=1.7 Score=50.91 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred CCCcEEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceeccC-CCcee
Q 003624 557 FCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDI-SDLAD 634 (807)
Q Consensus 557 ~sDPYv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~~~~ 634 (807)
.-|||+-|.+.-.. ..+.+...+..|.|+|+|..++.. ...+.|.|+.... ...+++..++++..+++.. ....+
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 56899888876544 455668899999999999998654 4578888988654 5556566666665555442 23347
Q ss_pred EEEeCCCcCcCccCceEEEEEEEeecCC
Q 003624 635 VWIPLQGKLAQACQSKLHLRIFLNNTKG 662 (807)
Q Consensus 635 ~w~~L~~k~~~~~~G~l~l~l~~~~~~~ 662 (807)
.|..++. .|+++..+.+.++-.
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGTLE 125 (694)
T ss_pred hcccccc------ccceeeeecccCcCC
Confidence 7988753 367888877766443
No 293
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.05 E-value=10 Score=34.07 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=42.6
Q ss_pred cceeEEeecCeeeeecCCCCceeEEEEecccceeeEecCCCccCCCCceEEEEeecccccccCCCceEeecCCceEEEEe
Q 003624 718 LQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMDARHGAKTQDEEGRLKFHFH 797 (807)
Q Consensus 718 ~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 797 (807)
-.|++.|...-+=||-+- ..+-.+.|||.+|..|-.. +..|..+ .+-+|-.+++| +|.|+
T Consensus 23 ~~GkiliGDkgfEFYn~~-nv~k~iqipWs~i~~v~vs--------------vs~KK~~---~~f~i~td~~g--k~~Fa 82 (122)
T COG4687 23 EYGKILIGDKGFEFYNDR-NVEKFIQIPWSEINEVDVS--------------VSLKKWG---RQFSIFTDTQG--KVRFA 82 (122)
T ss_pred hcCeEEEcccceeecCCC-ChhheeEecHHHhheehee--------------ehhhhhc---ceEEEEEcCCc--eEEEE
Confidence 569999999999997654 3356678999999744332 2222222 55667777655 89998
Q ss_pred eec
Q 003624 798 SFV 800 (807)
Q Consensus 798 sf~ 800 (807)
|--
T Consensus 83 Skd 85 (122)
T COG4687 83 SKD 85 (122)
T ss_pred eCC
Confidence 853
No 294
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.45 E-value=42 Score=33.30 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=35.0
Q ss_pred eeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcCCC-----CCCceeEEEEeeccc
Q 003624 37 TKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKY-----FNDDFVGFLKIPVSR 88 (807)
Q Consensus 37 Tkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~-----~~d~~iG~v~i~L~~ 88 (807)
+.++..+.+|.|+|+|.+.++. ...-|.+++++...- .....+|-+-+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4444444899999999999942 357899999986631 123456666666544
No 295
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.37 E-value=54 Score=33.05 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=38.8
Q ss_pred EEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCCCCCCC---ccceeEEEEce
Q 003624 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFNEA---TSLGHAEINFV 625 (807)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~~~~~d---d~lG~~~i~l~ 625 (807)
++|.+..+..+|.|||++.+.++.+ ...-|.++++.....-.+| ..+|-+.++|-
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 8899999999999999999988654 4556888887754300122 35666666664
No 296
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=59.89 E-value=19 Score=35.76 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=36.5
Q ss_pred EEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCCCCC-----CCccceeEEEEcee
Q 003624 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDGPFN-----EATSLGHAEINFVK 626 (807)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~~~~-----~dd~lG~~~i~l~~ 626 (807)
++|.+..+ .+|.|+|++.+.++.+ +..-|.+++++.+. -. ....+|-+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~-~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS-KKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc-ccccCCCccceEEEEEEeccc
Confidence 56666555 9999999999988554 35568899998764 21 12355655555543
No 297
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=59.41 E-value=78 Score=31.72 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=31.7
Q ss_pred eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcC
Q 003624 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (807)
Q Consensus 33 ~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d 71 (807)
....|.|...+.+|.|+|++.+.++- ...-|.+++|+..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 35778888889999999999999942 3468999999865
No 298
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=59.35 E-value=41 Score=33.11 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=49.3
Q ss_pred CCcEEEEEECCee-EEeecc--CCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCCCCCCCccceeEEEEceecc
Q 003624 558 CDPYVVFTCNGKS-RTSSIK--FQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSD 628 (807)
Q Consensus 558 sDPYv~v~~~~~~-~~T~v~--~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~ 628 (807)
..-|++|.++++. .+|+.. .....=.+||.|.+.+.. .+..|.++||.... ..+..|+.+.+++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 3468899999887 333332 223334468999998866 57899999999875 56679999999987643
No 299
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=56.20 E-value=65 Score=35.99 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=65.0
Q ss_pred CCcEEEEEECCeEEEeeeccC----CCCC-e-ee--cEEEEEEe------CC------CCEEEEEEEEcCC-----C-CC
Q 003624 22 SDPYVRLQLGRQRFKTKVVRK----SLSP-S-WE--EEFSFKVE------DL------KDELVISVLDEDK-----Y-FN 75 (807)
Q Consensus 22 ~DPyv~v~l~~~~~kTkvi~~----t~nP-~-Wn--E~f~f~v~------~~------~~~L~i~V~D~d~-----~-~~ 75 (807)
+.+||+|.+.+.-.+|..+.- +.+| . -+ -.|+++-. .. ...|.|.||.-.. + .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 567999999876555554432 1111 1 11 23444311 11 1579999998443 2 45
Q ss_pred CceeEEEEeecccccccCCCC--CccEEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 76 DDFVGFLKIPVSRVFDADNKS--LPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 76 d~~iG~v~i~L~~l~~~~~~~--~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
..+||.+.|||. +...+.+. ....|..+.............+|||.+...+.
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 679999999997 33323332 45689999877544434467899999987653
No 300
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=55.60 E-value=96 Score=33.68 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=75.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEe-eCCCCceEEEEEEEcCCCCCCCc
Q 003624 537 WLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDA-MDEPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 537 ~~L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v-~~~~~~~l~v~V~D~d~~~~~dd 615 (807)
..|-|.|-+-.++.. ...-|+.+..|....+|..+.-+..-+-+=.-...+ ....+..|+|.+|-... .+..
T Consensus 58 F~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL--vkk~ 130 (508)
T PTZ00447 58 FYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL--TKKV 130 (508)
T ss_pred eeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc--ccee
Confidence 347777777776654 346799999998888886665544444442223323 22335689999998765 5666
Q ss_pred cceeEEEEcee--ccCCCceeEEEeCCCcCcCccCceEEEEEE
Q 003624 616 SLGHAEINFVK--SDISDLADVWIPLQGKLAQACQSKLHLRIF 656 (807)
Q Consensus 616 ~lG~~~i~l~~--l~~~~~~~~w~~L~~k~~~~~~G~l~l~l~ 656 (807)
-||.+.+.+.. +...-+.+.||-+... +...+++.|++.
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~kD--Gq~~cRIqLSFh 171 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFKD--GQEICKVQMSFY 171 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEecC--CceeeeEEEEeh
Confidence 89999999977 5556667999999532 234667777776
No 301
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=54.74 E-value=1.5e+02 Score=32.35 Aligned_cols=112 Identities=13% Similarity=0.246 Sum_probs=74.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeeccCCCCC--eeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFKTKVVRKSLSP--SWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVG 80 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~kTkvi~~t~nP--~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG 80 (807)
|.|.|-+-.++. -...-|+.+..|+...+|..+.-+..- .-.|.....+...+.+|++.||-... .+..-||
T Consensus 60 LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL-vkk~hIg 133 (508)
T PTZ00447 60 LLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL-TKKVHIG 133 (508)
T ss_pred EEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc-cceeEEE
Confidence 445555544443 235679999999988888655433222 33455666666677899999998765 5667899
Q ss_pred EEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 81 FLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 81 ~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
.+.+.+..=.- +..-+...||.+...+ ...++|.|++.=.
T Consensus 134 dI~InIn~dII-dk~FPKnkWy~c~kDG-----q~~cRIqLSFhKL 173 (508)
T PTZ00447 134 QIKIDINASVI-SKSFPKNEWFVCFKDG-----QEICKVQMSFYKI 173 (508)
T ss_pred EEEecccHHHH-hccCCccceEEEecCC-----ceeeeEEEEehhh
Confidence 99998876432 2234678999996543 4578888887643
No 302
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=54.71 E-value=64 Score=29.25 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=49.6
Q ss_pred EEEEEECC-eEEEeeeccCCCCCeeecEEEEEEeCC--------CCEEEEEEEEcCCCCCCceeEEEEeecccccccCCC
Q 003624 25 YVRLQLGR-QRFKTKVVRKSLSPSWEEEFSFKVEDL--------KDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNK 95 (807)
Q Consensus 25 yv~v~l~~-~~~kTkvi~~t~nP~WnE~f~f~v~~~--------~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~ 95 (807)
||.+.+.. +.+.|.++. +.+|.+|-+-.|.|.-. ...+.|+++..-. .....+|.+.+++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC-
Confidence 55666544 456666665 88999998888888322 4789999988663 335689999999999985332
Q ss_pred CCccEEEEcccCCCCCCCCcceEEEEEEEEE
Q 003624 96 SLPTAWHSLQPKNKKSKNKDCGEILLTISFS 126 (807)
Q Consensus 96 ~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~ 126 (807)
.....-..|.+..+ ..-|.|...+++.
T Consensus 79 ~~i~~~~~l~g~~~----~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSG----EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS-----TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCC----CeEEEEEEEEEec
Confidence 11233445554432 3788888777763
No 303
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=54.66 E-value=18 Score=44.06 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=76.0
Q ss_pred CCcEEEEEECCe-EEEeeeccCC-CCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCcc
Q 003624 22 SDPYVRLQLGRQ-RFKTKVVRKS-LSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (807)
Q Consensus 22 ~DPyv~v~l~~~-~~kTkvi~~t-~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~ 99 (807)
.++|+.+.+... -.+|....+. .+|.|.+.|..........+++.|-+.+..+....+|.+++|+..+... ....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~---~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG---HRIG 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc---cccc
Confidence 589999988654 3667777776 8999999998888778889999998888766678999999999998763 3467
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEec
Q 003624 100 AWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~l~l~~~~~ 128 (807)
+|+++....++.. ...-.+.+++.|...
T Consensus 215 ~~~~Il~~d~~~~-~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 215 GWFPILDNDGKPH-QKGSNESLRLGFTPM 242 (887)
T ss_pred ceeeeeccCCccc-cCCcccceEEeeEee
Confidence 8999886654321 122244455555543
No 304
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=53.86 E-value=45 Score=30.24 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=48.8
Q ss_pred EEEEEECCee-EEeeccCCCCCCeEeEEEEEEeeCC-------CCceEEEEEEEcCCCCCCCccceeEEEEceeccCCC-
Q 003624 561 YVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDE-------PPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISD- 631 (807)
Q Consensus 561 Yv~v~~~~~~-~~T~v~~~t~nP~WnE~f~f~v~~~-------~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~- 631 (807)
||.+.+-.-. ..|.++ .+.+|.+|-+-.+.+..+ ....+.|+++..-. .....+|.+.|++.++....
T Consensus 2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCC
Confidence 4555544433 666666 489999999888877543 24569999988654 34679999999999865332
Q ss_pred -ceeEEEeCCCcCcCccCceEEEEEEEe
Q 003624 632 -LADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 632 -~~~~w~~L~~k~~~~~~G~l~l~l~~~ 658 (807)
....-..|.+..+. .-|.|...+.+.
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEEEec
Confidence 23445666655443 667777776654
No 305
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=50.05 E-value=49 Score=32.98 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred eEEEeeeccCCCCCeeecEEEEEEeC---CCCEEEEEEEEcC
Q 003624 33 QRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDED 71 (807)
Q Consensus 33 ~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d 71 (807)
....|.|...+.+|.|+|++.+.++- ...-|.+++++.+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 34778888889999999999999942 2468999999854
No 306
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=46.20 E-value=30 Score=31.32 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=52.2
Q ss_pred cccceEEEEEee-ccccceeEEeecCeeeeecCC----C-Cce---------eEEEEecccceeeEecCCCccCCCCceE
Q 003624 703 FLINDFTCHLKR-KMLLQGRLFLSARIIGFHANL----F-GHK---------TNFFFLWEDIEDIQVLPPSLSSMGSPVI 767 (807)
Q Consensus 703 ~l~~~~~c~l~~-~~~~~g~lyls~~~~cf~s~~----~-~~~---------~~~~i~~~~i~~i~k~~~~~~~~~~~~~ 767 (807)
+++-+..|.+.. -..+.|++-||+.+|.|.-.. + +.. -..-+++.+|..|.+..
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RR----------- 70 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRR----------- 70 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHh-----------
Confidence 455667888888 556789999999999999531 1 111 12367788887776654
Q ss_pred EEEeecccccccCCCceEeecCCceEEEEeeeccccc
Q 003624 768 VMTLRQGRGMDARHGAKTQDEEGRLKFHFHSFVSYNV 804 (807)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~~~~ 804 (807)
....+.|++|=-..+..| |-.|-+++.
T Consensus 71 ---------ylLr~~alEiF~~d~~~~-f~~F~~~~~ 97 (108)
T cd01201 71 ---------YLLQNTALELFLASRTSI-FFAFPDQNA 97 (108)
T ss_pred ---------hhcccceEEEEEeCCceE-EEEeCcHHH
Confidence 455888999832222233 445655543
No 307
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=45.87 E-value=47 Score=39.33 Aligned_cols=89 Identities=16% Similarity=0.329 Sum_probs=59.9
Q ss_pred eEEEEEeeccccceeEEee----cCeeeeecC------------CCCceeEEEEecccceeeEecCCCccCCCCceEEEE
Q 003624 707 DFTCHLKRKMLLQGRLFLS----ARIIGFHAN------------LFGHKTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMT 770 (807)
Q Consensus 707 ~~~c~l~~~~~~~g~lyls----~~~~cf~s~------------~~~~~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~ 770 (807)
.|.|-|+.+- |.+||+ .=.+||.+. .-....-+.||..||..++|... +|=-+=+++
T Consensus 520 ~F~AR~~Gkk---G~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG----lGWK~KLvV 592 (642)
T PF11696_consen 520 EFPARYKGKK---GHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG----LGWKGKLVV 592 (642)
T ss_pred eeeeecCCcc---ceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc----ccceeeEEE
Confidence 4889999986 999999 457899875 12235668999999999999862 333222222
Q ss_pred eeccccc---ccCCCceEe-ecCCceEEEEeeeccccccC
Q 003624 771 LRQGRGM---DARHGAKTQ-DEEGRLKFHFHSFVSYNVAH 806 (807)
Q Consensus 771 ~~~~~~~---~~~~~~~~~-~~~~~~~~~f~sf~~~~~~~ 806 (807)
|..+ ....+-.-+ +..|+ .|+++---.||+-|
T Consensus 593 ---GWa~g~kEv~DGL~I~g~~~g~-~y~lTA~~~RDeLF 628 (642)
T PF11696_consen 593 ---GWALGEKEVVDGLVIVGDEPGQ-EYHLTAMPRRDELF 628 (642)
T ss_pred ---eeecCCcccccceEEeccCCCC-EEEEEecchHHHHH
Confidence 2222 122232223 55566 99999999999877
No 308
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=44.47 E-value=48 Score=33.04 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=31.8
Q ss_pred EEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcCC
Q 003624 571 RTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFDG 609 (807)
Q Consensus 571 ~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d~ 609 (807)
..|.|..++.+|.|+|++.+.++.. ...-|.|+.++.+.
T Consensus 56 ~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 56 AYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred EEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 7888999999999999999988654 33458889988654
No 309
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=44.18 E-value=3.6e+02 Score=27.37 Aligned_cols=150 Identities=8% Similarity=0.049 Sum_probs=75.3
Q ss_pred eeEEecChhchhcccCCCCCcccHHHHHhcCCcceeecccccCCCCCceEEEEEEEeecCc---CCceeeEeEEEEEEee
Q 003624 257 DQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAANK---LIKATKGFEEQTYLKA 333 (807)
Q Consensus 257 d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~tY~~~~~~---~~k~~~~te~q~~~~~ 333 (807)
.-..++++++++++|+..+..+.......-....+-. ..+++ + .+.|.+++-. .+..-...-.+...+.
T Consensus 51 e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle----~id~~---~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~ 122 (208)
T cd08903 51 EGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVE----AISDD---V-SVCRTVTPSAAMKIISPRDFVDVVLVKRY 122 (208)
T ss_pred EEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEE----EecCC---E-EEEEEecchhcCCCcCCCceEEEEEEEec
Confidence 3447899999999998443333222221111111100 00011 1 2355544433 2444444443444444
Q ss_pred CCceEEEEEEEe-CCCC-CCCCeEEEEEE-EEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHHHH
Q 003624 334 DGKVFAILASVS-TPEV-MYGGSFKTELL-FCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQ 410 (807)
Q Consensus 334 ~~~~~~v~~~~~-tpdV-P~g~~F~v~~~-y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~ 410 (807)
+++.+++..... -|.. |-.++.+++.. +...+- .++.+++.|++.....+.+.++ +=+.+|.+...+++.+++..
T Consensus 123 ~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~-~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~ 200 (208)
T cd08903 123 EDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCE-PVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFYNN 200 (208)
T ss_pred CCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEE-ECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHHHH
Confidence 444444443333 3344 35788888666 333331 2245678888888877777544 22455555566666666666
Q ss_pred HHHHHh
Q 003624 411 FATFLS 416 (807)
Q Consensus 411 ~~~~l~ 416 (807)
+...++
T Consensus 201 Lr~~~~ 206 (208)
T cd08903 201 LTKAVK 206 (208)
T ss_pred HHHHHh
Confidence 655553
No 310
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=44.10 E-value=3.5e+02 Score=27.26 Aligned_cols=93 Identities=9% Similarity=0.107 Sum_probs=53.2
Q ss_pred cCCceeeEeEEEEEEeeCCceEEEEE-EEeCCCCCC-CCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEEEEeEee-
Q 003624 317 KLIKATKGFEEQTYLKADGKVFAILA-SVSTPEVMY-GGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQST- 390 (807)
Q Consensus 317 ~~~k~~~~te~q~~~~~~~~~~~v~~-~~~tpdVP~-g~~F~v~---~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~- 390 (807)
.+++.-...-.++..+.+ +.|++.. ++.-|..|- .++-+++ ..|.|++- ..+++.|++.....+...++.
T Consensus 107 ~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~---~~~~~~t~v~~~~~~Dp~G~iP 182 (208)
T cd08868 107 GLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL---PNNPNKCNFTWLLNTDLKGWLP 182 (208)
T ss_pred CcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEEC---CCCCCceEEEEEEEECCCCCCc
Confidence 345555555545554444 4555544 444466663 4555555 55788852 235578888888888887773
Q ss_pred -eeechhccchHHHHHHHHHHHHHHHh
Q 003624 391 -MMKGMIENGARSALRETYEQFATFLS 416 (807)
Q Consensus 391 -~~k~~Ie~~~~~g~~~~~~~~~~~l~ 416 (807)
|+ +...+..++-+.+..+.+.+.
T Consensus 183 ~~l---vN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 183 QYL---VDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred cee---eehhhHHHHHHHHHHHHHHHh
Confidence 44 444455555555555555443
No 311
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=41.83 E-value=2.5e+02 Score=26.05 Aligned_cols=87 Identities=14% Similarity=0.280 Sum_probs=54.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEE-eeeccCCCCCee-ecEEEEEEe---CCCCEEEEEEEEcCC-CCC
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGRQRFK-TKVVRKSLSPSW-EEEFSFKVE---DLKDELVISVLDEDK-YFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~~~~~k-Tkvi~~t~nP~W-nE~f~f~v~---~~~~~L~i~V~D~d~-~~~ 75 (807)
.|.++=+.-.++|..+..+.+.||+++.-+..... +...... .... ...+.+.+. .....+.|.+|+... ...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 46666667788888776778999999998877653 3322111 1111 233444442 346899999999873 345
Q ss_pred CceeEEEEeecccc
Q 003624 76 DDFVGFLKIPVSRV 89 (807)
Q Consensus 76 d~~iG~v~i~L~~l 89 (807)
++.+.++.+.-.-+
T Consensus 84 ~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 84 KEKMFRFWFNTGFI 97 (134)
T ss_dssp CEEEEEEEEEGGGS
T ss_pred cCeEEEEEEeeeee
Confidence 66788877766555
No 312
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=41.12 E-value=6.3 Score=45.56 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=41.0
Q ss_pred CCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeC-CCCceEEEEEEEcCCCCCCCc
Q 003624 557 FCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMD-EPPSMLDVEVYDFDGPFNEAT 615 (807)
Q Consensus 557 ~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~-~~~~~l~v~V~D~d~~~~~dd 615 (807)
+.+|+++..++.+.++|+....+.+|+|||. ++++.+ .....|...|.+++. .+-+|
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~-~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE-LDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc-ccccc
Confidence 5789999999999999999999999999997 664432 223335555555554 44444
No 313
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=40.29 E-value=78 Score=31.71 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=31.5
Q ss_pred eEEeeccCCCCCCeEeEEEEEEeeCC--CCceEEEEEEEcC
Q 003624 570 SRTSSIKFQQCDPMWNEIFEYDAMDE--PPSMLDVEVYDFD 608 (807)
Q Consensus 570 ~~~T~v~~~t~nP~WnE~f~f~v~~~--~~~~l~v~V~D~d 608 (807)
...|.|..++.+|.|+|++.+.++.. ...-|.|+.++.+
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 37888999999999999999988654 3445888998865
No 314
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=39.92 E-value=3.1e+02 Score=26.79 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=52.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----------Ce-EEEeeeccC-----CCCCeeecEEEEEEe--CC--CCE
Q 003624 3 LVVRVIEARNIPAMDQNGYSDPYVRLQLG----------RQ-RFKTKVVRK-----SLSPSWEEEFSFKVE--DL--KDE 62 (807)
Q Consensus 3 L~V~Vi~A~~L~~~d~~g~~DPyv~v~l~----------~~-~~kTkvi~~-----t~nP~WnE~f~f~v~--~~--~~~ 62 (807)
+.-.|..|.+... .+-||+..+. .. ...|.+... +..-.||.-|.+.+. .+ -..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 4456888886542 4568888772 23 455555442 334579988888772 22 269
Q ss_pred EEEEEEEcCCCCCCceeEEEEeec
Q 003624 63 LVISVLDEDKYFNDDFVGFLKIPV 86 (807)
Q Consensus 63 L~i~V~D~d~~~~d~~iG~v~i~L 86 (807)
|.++||..|.++++...|-..+.|
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEe
Confidence 999999999999998888655544
No 315
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=36.76 E-value=65 Score=29.57 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=31.6
Q ss_pred ccccceeEEeecCeeeeecCCCCceeEEEEecccceeeEec
Q 003624 715 KMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVL 755 (807)
Q Consensus 715 ~~~~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~ 755 (807)
-+.-+|++.|..+-+=||..- ..+--+-|||++|+.|...
T Consensus 20 g~~~yGkimiGDkaFEFyn~~-n~~dyIQIPW~eI~~V~a~ 59 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDR-NVEDYIQIPWEEIDYVIAS 59 (118)
T ss_pred cccccCeEEEcccceEeecCC-ChhhcEEeChhheeEEEEE
Confidence 466889999999999998753 2245678999999877654
No 316
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.62 E-value=12 Score=44.23 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=62.0
Q ss_pred CCCcEEEEEECCeE-EEeeeccCCCCCeeecEEEEEEeCCCCEEEEEEEEcCCCCCCceeEEEEeecccccccCCCCCcc
Q 003624 21 YSDPYVRLQLGRQR-FKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFNDDFVGFLKIPVSRVFDADNKSLPT 99 (807)
Q Consensus 21 ~~DPyv~v~l~~~~-~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~d~~iG~v~i~L~~l~~~~~~~~~~ 99 (807)
..+||+.+.+.-.. ..+.+.+.+..|.|+++|...+. ....+.|.|+.......+.+..++.+..+++... .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~--~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL--ALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHH--hhhhh
Confidence 46899999886433 34455667999999999999974 4678888898876544444444444444444321 11345
Q ss_pred EEEEcccCCCCCCCCcceEEEEEEEEEe
Q 003624 100 AWHSLQPKNKKSKNKDCGEILLTISFSH 127 (807)
Q Consensus 100 ~w~~L~~~~~~~~~~~~G~I~l~l~~~~ 127 (807)
.|..+.+ .|.+...+.+..
T Consensus 104 ~w~~~~~---------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 104 LWVLIEE---------LGTLLKPAALTG 122 (694)
T ss_pred hcccccc---------ccceeeeecccC
Confidence 7877653 477777777654
No 317
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=34.20 E-value=1.3e+02 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=29.2
Q ss_pred CCCCceEEEEEEEcCCCCCCCccceeEEEEceeccCCCceeEEEeCCCcC
Q 003624 594 DEPPSMLDVEVYDFDGPFNEATSLGHAEINFVKSDISDLADVWIPLQGKL 643 (807)
Q Consensus 594 ~~~~~~l~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~ 643 (807)
..+.....|++||.|. +..|++|+.+..+ .+..|.|.|..
T Consensus 8 ~~P~~~~~V~L~e~d~-~~~Ddll~~~~Td---------~~G~F~l~G~~ 47 (80)
T PF01060_consen 8 GKPAKNVKVKLWEDDY-FDPDDLLDETKTD---------SDGNFELSGST 47 (80)
T ss_pred CccCCCCEEEEEECCC-CCCCceeEEEEEC---------CCceEEEEEEc
Confidence 3445667899999998 8899999987662 24467776643
No 318
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=34.12 E-value=4.8e+02 Score=25.86 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=59.1
Q ss_pred CCceeeEeEEEEEEe-eCCceEEEEEEEeCCCCCC--CCeEEEEEE---EEEecCCCCCCCCCceEEEEEEEEEEeEeee
Q 003624 318 LIKATKGFEEQTYLK-ADGKVFAILASVSTPEVMY--GGSFKTELL---FCITPGPELSSGEQSSHLVISWRMNFLQSTM 391 (807)
Q Consensus 318 ~~k~~~~te~q~~~~-~~~~~~~v~~~~~tpdVP~--g~~F~v~~~---y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~ 391 (807)
+++.-...-.....+ .++..+++..++..|..|- .+.-++++. |+|+ +.+++.|++.....++..++.
T Consensus 103 p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~-----~~~~~~~~vt~~~~~D~~G~i- 176 (206)
T PF01852_consen 103 PVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIR-----PLGDGRTRVTYVSQVDPKGWI- 176 (206)
T ss_dssp TSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEE-----EETTCEEEEEEEEEEESSSSS-
T ss_pred CCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEE-----EccCCCceEEEEEEECCCCCC-
Confidence 345444443333333 3344455566777888774 777777665 6788 466677988888888877764
Q ss_pred eechhccchHHHHHHHHHHHHHHHhccc
Q 003624 392 MKGMIENGARSALRETYEQFATFLSQTI 419 (807)
Q Consensus 392 ~k~~Ie~~~~~g~~~~~~~~~~~l~~~~ 419 (807)
-+.++..-+.+++-+.++.+.+.|+++-
T Consensus 177 P~~~~n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 177 PSWLVNMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 1333334445555567777777776653
No 319
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=32.15 E-value=78 Score=38.65 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEE----CCee----EEeeccCCCCCCeEeEEEEEEeeC---CCCceEEEEEEEc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTC----NGKS----RTSSIKFQQCDPMWNEIFEYDAMD---EPPSMLDVEVYDF 607 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~----~~~~----~~T~v~~~t~nP~WnE~f~f~v~~---~~~~~l~v~V~D~ 607 (807)
++|+++.+.++-. ....|-+|.|.. |++. +.|+-+....+|.||+..+|++.- +....|-+.||--
T Consensus 345 frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 345 FRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred eEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 7888888776533 335677777774 4444 455555568899999999998832 2345677777763
No 320
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=31.89 E-value=5.5e+02 Score=25.92 Aligned_cols=147 Identities=12% Similarity=0.198 Sum_probs=79.9
Q ss_pred EE-ecChhchhcccCCCCCcccHHHHHhcC-CcceeecccccCCCCCceEEEEEEEeecCcCCceeeEeEEEEEEeeCCc
Q 003624 259 MY-VIAPQDLNTLLFSPDSNFPRTWAEEQG-NTELQIGPWRFENGCESLKRDVTYIKAANKLIKATKGFEEQTYLKADGK 336 (807)
Q Consensus 259 ~~-~~~~~~l~~llf~~~s~f~~~~~~~~~-~~~~~~~~w~~~~~~~~~~R~~tY~~~~~~~~k~~~~te~q~~~~~~~~ 336 (807)
.+ .++++.+++++.. ..+.......-. ...+... .+.+ .+.+-|......+++.-...-.......+++
T Consensus 57 ~~~~~s~~~~~~~l~D--~~~r~~Wd~~~~~~~~le~~----~~~~---~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 57 VFEDCTPELLRDFYWD--DEYRKKWDETVIEHETLEED----EKSG---TEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEcCCCHHHHHHHHcC--hhhHhhhhhheeeEEEEEec----CCCC---cEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 45 5699999999974 444444333221 1112111 1101 2323233333344555444443333333244
Q ss_pred eEEEEE-EEeCCCCCCCCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHHHHHH
Q 003624 337 VFAILA-SVSTPEVMYGGSFKTE---LLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFA 412 (807)
Q Consensus 337 ~~~v~~-~~~tpdVP~g~~F~v~---~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~~~ 412 (807)
.+++.. .+.-|.+|-.+.-+|+ -.|.|++- ..+++.|++.+.+..+-.+ .+=+.++...+..|.-+.++.+.
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~---~~~~~~t~~~~~~~~dp~G-~IP~wlvN~~~~~~~~~~l~~l~ 203 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAV---KGDGQGSACEVTYFHNPDG-GIPRELAKLAVKRGMPGFLKKLE 203 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEe---cCCCCceEEEEEEEECCCC-CCCHHHHHHHHHhhhHHHHHHHH
Confidence 555544 4445678865555554 45677741 1266778888888776533 34556667777777778888888
Q ss_pred HHHhcc
Q 003624 413 TFLSQT 418 (807)
Q Consensus 413 ~~l~~~ 418 (807)
+.+++|
T Consensus 204 ~a~~~Y 209 (209)
T cd08870 204 NALRKY 209 (209)
T ss_pred HHHhcC
Confidence 777654
No 321
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=28.95 E-value=40 Score=38.06 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=41.0
Q ss_pred eeEEEEeecccccccCCCCCccEEEEcccCCCCCCCCcceEEEEEEEEEecCCCCCccCCCCCcccccC
Q 003624 78 FVGFLKIPVSRVFDADNKSLPTAWHSLQPKNKKSKNKDCGEILLTISFSHNTSSADFNINSDPLDQLKT 146 (807)
Q Consensus 78 ~iG~v~i~L~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~G~I~l~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (807)
.+|.+.||+..+.. .+...+.||++.+...++ ...|.+ ++++| .+...+|...|.++..
T Consensus 1 ~~G~v~i~~~~~~~--~~~~~e~w~~i~~~~~~~--~~~~~l-lk~~~-----~~~~VLp~~~Y~~l~~ 59 (395)
T cd05137 1 LVGRIDITLEMILD--RGLDKETWLPIFDVDNKS--VGEGLI-IKVSS-----EENFVLPSNNYEKLEE 59 (395)
T ss_pred CeeEEEeehhhhcc--CCCCceeeeccccCCCCC--cCcceE-EEEEe-----eeceeccHHHHHHHHH
Confidence 48999999999543 234568999999865442 345666 78888 4556677777776554
No 322
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=28.73 E-value=3.3e+02 Score=27.37 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=44.3
Q ss_pred EEeecCcCCceeeEeEEEEEE-eeCCceEEEEEEEeCC--CCCCCCeEEEE---EEEEEecCCCCCCCCCceEEEEEEEE
Q 003624 311 YIKAANKLIKATKGFEEQTYL-KADGKVFAILASVSTP--EVMYGGSFKTE---LLFCITPGPELSSGEQSSHLVISWRM 384 (807)
Q Consensus 311 Y~~~~~~~~k~~~~te~q~~~-~~~~~~~~v~~~~~tp--dVP~g~~F~v~---~~y~i~~g~~~~~~~~~~~l~vs~~i 384 (807)
|..+...+++.-.....+... ..++..|++......| .+|= ++.++. ..|.|+ |.+++.|++.--..+
T Consensus 92 ~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~-----p~~~~~t~vty~~~~ 165 (197)
T cd08869 92 YVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL-GGVRAVVLASRYLIE-----PCGSGKSRVTHICRV 165 (197)
T ss_pred EEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEE-----ECCCCCeEEEEEEEE
Confidence 444444445544444432222 2334456655555433 4655 655544 568898 466788999888888
Q ss_pred EEeEee--eee
Q 003624 385 NFLQST--MMK 393 (807)
Q Consensus 385 ~~~~s~--~~k 393 (807)
...++. |+-
T Consensus 166 Dp~G~iP~wl~ 176 (197)
T cd08869 166 DLRGRSPEWYN 176 (197)
T ss_pred CCCCCCCceee
Confidence 888873 553
No 323
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=27.86 E-value=73 Score=35.96 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=31.4
Q ss_pred cceeEEEEcee-ccCCCceeEEEeCCCcCcC-ccCceEEEEEEEe
Q 003624 616 SLGHAEINFVK-SDISDLADVWIPLQGKLAQ-ACQSKLHLRIFLN 658 (807)
Q Consensus 616 ~lG~~~i~l~~-l~~~~~~~~w~~L~~k~~~-~~~G~l~l~l~~~ 658 (807)
.+|.+.|++.. +..+...+.|+++.+...+ ...|.+ |++.++
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 6666788999999874333 345666 677665
No 324
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.76 E-value=1.1e+02 Score=35.71 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=55.0
Q ss_pred ccccccC-CCccccccceEEEEEeeccccceeEEeecCeeeeecCCCCceeEEEEecccceeeEecCCCcc
Q 003624 691 AFQKLFG-LPPEEFLINDFTCHLKRKMLLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVLPPSLS 760 (807)
Q Consensus 691 ~f~~~F~-lp~~e~l~~~~~c~l~~~~~~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~~~~~~ 760 (807)
.++..|. ||.+....+.|.|-+.. +..|.|+||.--|-|.|.--+..--+-+|+.=|+.|||..+..+
T Consensus 29 ~~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~ 97 (717)
T KOG4471|consen 29 NLQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATS 97 (717)
T ss_pred cccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCcccc
Confidence 3677776 77887778889999988 88899999999999988665544456699999999999975543
No 325
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.76 E-value=5.7e+02 Score=23.79 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=40.7
Q ss_pred EeCCCCCCCCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeEe--eeeechhccchHHHHHHHHHHHHHHHhc
Q 003624 344 VSTPEVMYGGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQS--TMMKGMIENGARSALRETYEQFATFLSQ 417 (807)
Q Consensus 344 ~~tpdVP~g~~F~v~~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s--~~~k~~Ie~~~~~g~~~~~~~~~~~l~~ 417 (807)
....+.+.+...++.+.|.+.+ ....|++.+...+...+. .+++.+|++-+...+ +++.+.|++
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~------~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~----~~~~~~l~~ 142 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSP------AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLL----AQFAANLEA 142 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEe------cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHH----HHHHHHHHH
Confidence 3444456666678888888884 335688888887777665 366666666555444 444444444
No 326
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=23.70 E-value=84 Score=32.23 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=31.8
Q ss_pred eeEEEEecccceeeEecCCCccCCCCceEEEEeecccccc
Q 003624 739 KTNFFFLWEDIEDIQVLPPSLSSMGSPVIVMTLRQGRGMD 778 (807)
Q Consensus 739 ~~~~~i~~~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~ 778 (807)
...|-+|+.||..|++.++.+ |.+-|+++++.|..+-
T Consensus 111 ~~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~p 147 (213)
T PF12068_consen 111 SYAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSLP 147 (213)
T ss_pred ceEEEEEhhheeeEEecCCCC---CceEEEEEecCCCccC
Confidence 458899999999999998765 8899999999987654
No 327
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=22.92 E-value=7.3e+02 Score=24.36 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=66.5
Q ss_pred eeeEEecChhchhcccCCCCCcccHHHHHhcCCcceeecccccCCCCCceEEEEEEEeecC-cCCceeeEeEEEEEEee-
Q 003624 256 VDQMYVIAPQDLNTLLFSPDSNFPRTWAEEQGNTELQIGPWRFENGCESLKRDVTYIKAAN-KLIKATKGFEEQTYLKA- 333 (807)
Q Consensus 256 ~d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~~w~~~~~~~~~~R~~tY~~~~~-~~~k~~~~te~q~~~~~- 333 (807)
..-.++++++++++++... ....++...-....+ -. ..++. ..+.|..-.. .++..-..+-.......
T Consensus 45 ~~~~i~~s~e~v~~vi~d~--e~~~~w~~~~~~~~v--ie----~~~~~--~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~ 114 (195)
T cd08876 45 AVAEVDASIEAFLALLRDT--ESYPQWMPNCKESRV--LK----RTDDN--ERSVYTVIDLPWPVKDRDMVLRSTTEQDA 114 (195)
T ss_pred EEEEEeCCHHHHHHHHhhh--HhHHHHHhhcceEEE--ee----cCCCC--cEEEEEEEecccccCCceEEEEEEEEEcC
Confidence 4445888999999998743 333444332221111 11 11111 2333333222 22333223222222222
Q ss_pred CCceEEEEEEEeCCCCCCC-C---eEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHHH
Q 003624 334 DGKVFAILASVSTPEVMYG-G---SFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYE 409 (807)
Q Consensus 334 ~~~~~~v~~~~~tpdVP~g-~---~F~v~~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~~ 409 (807)
+++.+++......+++|-. + .+.....|.|. +.+++.|++.....+.+.++ +-+.+|..-+..+....+.
T Consensus 115 ~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~-----~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~ 188 (195)
T cd08876 115 DDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFT-----PLGNGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLE 188 (195)
T ss_pred CCCEEEEEeecCCccCCCCCCeEEceeceeeEEEE-----ECCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 2344555444333335532 2 23444558888 45678898888888887643 4455555555544433333
Q ss_pred H
Q 003624 410 Q 410 (807)
Q Consensus 410 ~ 410 (807)
.
T Consensus 189 ~ 189 (195)
T cd08876 189 N 189 (195)
T ss_pred H
Confidence 3
No 328
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.41 E-value=5.9e+02 Score=23.09 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=39.3
Q ss_pred CCeEEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeEeeeeechhccchHHHHHHHHHHHHHHHhcc
Q 003624 352 GGSFKTELLFCITPGPELSSGEQSSHLVISWRMNFLQSTMMKGMIENGARSALRETYEQFATFLSQT 418 (807)
Q Consensus 352 g~~F~v~~~y~i~~g~~~~~~~~~~~l~vs~~i~~~~s~~~k~~Ie~~~~~g~~~~~~~~~~~l~~~ 418 (807)
+.....+..|.+.+ . .+.|+|..+..+.+.+ .++.|...-.....++....+.+.|++.
T Consensus 84 ~~~~~~~~~~~l~~-----~-~~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 84 AGFVKGTARVTLEP-----D-GGGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred CceEEEEEEEEEEe-----c-CCcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44568888999984 3 4568877777777654 4555565555556666666777666654
No 329
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=21.48 E-value=3.9e+02 Score=31.48 Aligned_cols=113 Identities=16% Similarity=0.277 Sum_probs=74.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEECCeeEEeeccCCCCCCeEeEEEEEEeeCCCCceEEEEEEEcCC--CCCCCcc
Q 003624 539 LTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDG--PFNEATS 616 (807)
Q Consensus 539 L~V~vi~a~~L~~~d~~g~sDPYv~v~~~~~~~~T~v~~~t~nP~WnE~f~f~v~~~~~~~l~v~V~D~d~--~~~~dd~ 616 (807)
+.|.|.+-++|.....+ .=-||...+.|.+-.|... ....|.|.-.-.|.. ..+...++|.+|-... ..-.|..
T Consensus 343 mevvvmevqglksvapn--rivyctmevegeklqtdqa-easkp~wgtqgdfst-thplpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFST-THPLPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeEEEeeeccccccCCC--eeEEEEEEecccccccchh-hhcCCCCCcCCCccc-CCCCceeEEEEEeecceeEEeechh
Confidence 67888999999775432 3369999999988666655 445799998777743 3345678888887654 1124668
Q ss_pred ceeEEEEceeccCCCceeEEEeCC-CcCcCccCceEEEEEEE
Q 003624 617 LGHAEINFVKSDISDLADVWIPLQ-GKLAQACQSKLHLRIFL 657 (807)
Q Consensus 617 lG~~~i~l~~l~~~~~~~~w~~L~-~k~~~~~~G~l~l~l~~ 657 (807)
+|++.+.-.. .......|+.+. +|+.+...-+|.|.+..
T Consensus 419 lgrvil~ptp--ns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 419 LGRVILQPTP--NSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred hCeEEEecCC--CCcCCccceeeecCCCCcCccceEEEEEec
Confidence 9998775433 223347898886 45555544455555544
No 330
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=20.24 E-value=1.1e+02 Score=31.64 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.9
Q ss_pred ccceeEEeecCeeeeecCCCCceeEEEEecccceeeEec
Q 003624 717 LLQGRLFLSARIIGFHANLFGHKTNFFFLWEDIEDIQVL 755 (807)
Q Consensus 717 ~~~g~lyls~~~~cf~s~~~~~~~~~~i~~~~i~~i~k~ 755 (807)
+..||+.||++.|.|-++ .-|..||+.+|.+|...
T Consensus 25 W~~~rIiLs~~rlvl~~~----~~k~~Ipls~I~Di~~~ 59 (221)
T PF04283_consen 25 WVKGRIILSNDRLVLAFN----DGKITIPLSSIEDIGVR 59 (221)
T ss_pred cEEEEEEEecCEEEEEcC----CCeEEEecceeEecccc
Confidence 556999999999999883 45679999999999984
Done!