Query 003624
Match_columns 807
No_of_seqs 634 out of 3329
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 17:36:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003624.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1675-1679//hhsearch_pdb/003624hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 226.8 30.2 102 2-106 20-127 (284)
2 1dqv_A Synaptotagmin III; beta 1.0 1 1 225.1 18.2 102 2-105 21-129 (296)
3 2fk9_A Protein kinase C, ETA t 1.0 1 1 164.3 13.7 116 534-658 26-156 (157)
4 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 157.7 16.5 123 535-659 5-133 (140)
5 3jzy_A Intersectin 2; C2 domai 1.0 1 1 156.0 14.7 120 535-659 385-508 (510)
6 1gmi_A Protein kinase C, epsil 1.0 1 1 155.7 13.8 118 535-661 4-135 (136)
7 3kwu_A MUNC13-1; calcium bindi 1.0 1 1 155.3 18.6 120 535-658 15-146 (148)
8 3m7f_B E3 ubiquitin-protein li 1.0 1 1 155.0 16.6 125 2-128 9-142 (176)
9 1wfj_A Putative elicitor-respo 1.0 1 1 155.0 13.4 123 535-661 8-132 (136)
10 3b7y_A E3 ubiquitin-protein li 1.0 1 1 154.7 16.4 122 535-658 18-152 (153)
No 1
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=226.83 Aligned_cols=102 Identities=39% Similarity=0.710 Sum_probs=89.7
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEC---CEEEEEEECCCCCCCEEECEEEEEEEC---CCCEEEEEEEECCCCCC
Q ss_conf 999999996479999999988729999999---958974300399998441099999709---99979999997578999
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLG---RQRFKTKVVRKSLSPSWEEEFSFKVED---LKDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~i~l~---~~~~kTkvi~~t~nP~WnE~f~f~v~~---~~~~L~i~V~D~d~~~~ 75 (807)
+|.|+|++|++|++++.+|.+||||++.++ .++.+|+++++++||+|||+|.|.+.. ....|.+.|||++.+++
T Consensus 20 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~ 99 (284)
T 2r83_A 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK 99 (284)
T ss_dssp EEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 99999998409998778999796799999819985476885159999825736999846688375789999998898877
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCEEEECCC
Q ss_conf 9555989931630015688998648999556
Q 003624 76 DDFVGFLKIPVSRVFDADNKSLPTAWHSLQP 106 (807)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~~~~~~w~~L~~ 106 (807)
+++||++.+++..+... .....|++|.+
T Consensus 100 ~~~lG~~~i~l~~l~~~---~~~~~w~~L~~ 127 (284)
T 2r83_A 100 HDIIGEFKVPMNTVDFG---HVTEEWRDLQS 127 (284)
T ss_dssp CCEEEEEEEEGGGCCCS---SCEEEEEECBC
T ss_pred CCEEEEEEECCHHCCCC---CCCEEEEEEEC
T ss_conf 74658999735013567---76303898303
No 2
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=225.10 Aligned_cols=102 Identities=35% Similarity=0.669 Sum_probs=84.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEEECCCCCCCEEECEEEEEEECC---CCEEEEEEEECCCCCC
Q ss_conf 99999999647999999998872999999---99589743003999984410999997099---9979999997578999
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQL---GRQRFKTKVVRKSLSPSWEEEFSFKVEDL---KDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~i~l---~~~~~kTkvi~~t~nP~WnE~f~f~v~~~---~~~L~i~V~D~d~~~~ 75 (807)
+|.|+|++|++|++++.+|.+||||++.+ +.++++|+++++++||+|||+|.|.+... ...|.|.|||+|.+++
T Consensus 21 ~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~ 100 (296)
T 1dqv_A 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 100 (296)
T ss_dssp EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSC
T ss_pred EEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHCCCEEEEEEEECCCCCC
T ss_conf 89999999579998678998083999999858971476872479999738207999936899267889999997589887
Q ss_pred CCEEEEEEEE-CCCCCCCCCCCCCCEEEECC
Q ss_conf 9555989931-63001568899864899955
Q 003624 76 DDFVGFLKIP-VSRVFDADNKSLPTAWHSLQ 105 (807)
Q Consensus 76 d~~lG~v~i~-l~~l~~~~~~~~~~~w~~L~ 105 (807)
+++||++.++ +..+... ......|++|.
T Consensus 101 ~~~iG~~~i~~l~~~~~~--~~~~~~w~~L~ 129 (296)
T 1dqv_A 101 HDLIGQVVLDNLLELAEQ--PPDRPLWRDIL 129 (296)
T ss_dssp CCEEEEEECCCTTGGGSS--CSSCCCCEECB
T ss_pred CCEEEEEEECCCCCCCCC--CCCCEEEECCC
T ss_conf 746799992531021337--76504662023
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=164.35 Aligned_cols=116 Identities=19% Similarity=0.265 Sum_probs=101.7
Q ss_pred CCCEEEEEEEEEEECCCCCCC----------CCCCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 878399999999573999998----------8888849999999966-78551689999849578999923799966899
Q 003624 534 GDGWLLTVALIKGDNLAAVDS----------SGFCDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (807)
Q Consensus 534 ~~~~~L~V~ii~a~~L~~~d~----------~g~sDPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i 602 (807)
...|.|+|+|++|++|+++|. .|.+||||++.+++++ .+|+++++|+||+|||+|+|.+.. ...|.|
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~ 103 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLEL 103 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCC--CCEEEE
T ss_conf 276089999999889987555543220236788878299999999966786522799998337589999189--999999
Q ss_pred EEEECCCCCCCCCCCEEEEEECEECCCC----CCEEEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 9997378999885103699983004689----9411899577767575573079999996
Q 003624 603 EVYDFDGPFNEATSLGHAEINFVKSDIS----DLADVWIPLQGKLAQACQSKLHLRIFLN 658 (807)
Q Consensus 603 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~----~~~~~w~~L~~k~~~~~~G~l~l~i~~~ 658 (807)
+|||+|. +++||+||++.|++.++..+ ...+.|++|++ +|+|+|+++++
T Consensus 104 ~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 104 AVFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT 156 (157)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHHHCCCCCCCCCCEEEECCC------CCEEEEEEEEE
T ss_conf 9998998-88898998999998993224577876337998999------93999999997
No 4
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=157.75 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=102.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEEECCCCC
Q ss_conf 7839999999957399999888888499999999667855168999984957899992379---9966899999737899
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDE---PPSMLDVEVYDFDGPF 611 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~---~~~~l~i~V~D~d~~~ 611 (807)
..+.|.|+|++|++|+..|. |.+||||++.+++++++|+++++++||+|||+|.|.+... ....|.|+|||+|. +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~ 82 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-I 82 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-S
T ss_pred CCCEEEEEEEEEECCCCCCC-CCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCC-C
T ss_conf 88489999998058998899-989949999999876783404699899617579998316565778889999997987-7
Q ss_pred CCCCCCEEEEEECEECCCCCCEEEEEE---CCCCCCCCCCCEEEEEEEEEE
Q ss_conf 988510369998300468994118995---777675755730799999962
Q 003624 612 NEATSLGHAEINFVKSDISDLADVWIP---LQGKLAQACQSKLHLRIFLNN 659 (807)
Q Consensus 612 ~~dd~lG~~~i~l~~l~~~~~~~~w~~---L~~k~~~~~~G~l~l~i~~~~ 659 (807)
++|++||++.+++.++..+...+.|++ |....+....|+|+|++.|..
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEC
T ss_conf 799568999999899444798316885166337889887878999999978
No 5
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=1.00 E-value=1 Score=156.00 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=106.1
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 78399999999573999998888884999999996678551689999849578999923799966899999737899988
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNEA 614 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d~~~~~d 614 (807)
..+.|+|+|++|++|+++|.+|.+||||++.+++++++|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~-~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ-FSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS-SSSC
T ss_pred CCCEEEEEECEEECCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC-CCCC
T ss_conf 776699994545369999999997807999999960318856899899327438998348989979999983898-8888
Q ss_pred CCCEEEEEECEECCCCCC----EEEEEECCCCCCCCCCCEEEEEEEEEE
Q ss_conf 510369998300468994----118995777675755730799999962
Q 003624 615 TSLGHAEINFVKSDISDL----ADVWIPLQGKLAQACQSKLHLRIFLNN 659 (807)
Q Consensus 615 d~lG~~~i~l~~l~~~~~----~~~w~~L~~k~~~~~~G~l~l~i~~~~ 659 (807)
|+||++.+++.++..+.. .+.|++|.++ ..|.|++++.+..
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~l 508 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQL 508 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEEE
T ss_pred CCEEEEEEEHHHHCCCCCCCCCEEEEECCCCC----CCCEEEEEEEEEE
T ss_conf 70389999999925556778844566357887----8836999999997
No 6
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=155.70 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=100.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCC-----------CCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 78399999999573999998888-----------8849999999966-78551689999849578999923799966899
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGF-----------CDPYVVFTCNGKS-RTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDV 602 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~-----------sDPYv~i~~~~~~-~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i 602 (807)
..|.|+|+|++|++|+++|..|+ +||||++.+++.+ .+|+++++|+||+|||+|+|.+... ..|.+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECCC--CEEEE
T ss_conf 4408999999686999866365113355467767695899998996700335787996974488899980689--99999
Q ss_pred EEEECCCCCCCCCCCEEEEEECEECCCCC--CEEEEEECCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 99973789998851036999830046899--411899577767575573079999996249
Q 003624 603 EVYDFDGPFNEATSLGHAEINFVKSDISD--LADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (807)
Q Consensus 603 ~V~D~d~~~~~dd~lG~~~i~l~~l~~~~--~~~~w~~L~~k~~~~~~G~l~l~i~~~~~~ 661 (807)
+|||+|. +++||+||++.+++.++..+. ..+.|++|++ .|+|+|++.|..+.
T Consensus 82 ~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEE
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCC------CEEEEEEEEEEECC
T ss_conf 9996998-888988999999889921057987117898599------80999999999168
No 7
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=1.00 E-value=1 Score=155.29 Aligned_cols=120 Identities=23% Similarity=0.412 Sum_probs=105.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC---
Q ss_conf 78399999999573999998888884999999996678551689999849578999923799966899999737899---
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPF--- 611 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d~~~--- 611 (807)
..+.|+|+|++|++|++.|.+|.+||||++.+++++++|+++++++||.|||+|.|.+... ...|.++|||+|. +
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~-~~~~ 92 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD-DIKS 92 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC-SHHH
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEEECCC-CCEEEEEEEECCC-CCCC
T ss_conf 5537999999610998889998918379999999998877557998987246899984499-9989999998998-8443
Q ss_pred --------CCCCCCEEEEEECEECCCCCCEEEEEECCCCCCC-CCCCEEEEEEEEE
Q ss_conf --------9885103699983004689941189957776757-5573079999996
Q 003624 612 --------NEATSLGHAEINFVKSDISDLADVWIPLQGKLAQ-ACQSKLHLRIFLN 658 (807)
Q Consensus 612 --------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~k~~~-~~~G~l~l~i~~~ 658 (807)
++|++||++.+++.++ ....+.|++|..+.+. ...|.|+|++.++
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEEHHHC--CCCCCEEEECCCCCCCCCCCEEEEEEEEEE
T ss_conf 310123577896579999998997--688988998406888888766899999999
No 8
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=155.02 Aligned_cols=125 Identities=29% Similarity=0.520 Sum_probs=74.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEEECCCCCCCEEECEEEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 9999999964799999999887299999999------5897430039999844109999970999979999997578999
Q 003624 2 KLVVRVIEARNIPAMDQNGYSDPYVRLQLGR------QRFKTKVVRKSLSPSWEEEFSFKVEDLKDELVISVLDEDKYFN 75 (807)
Q Consensus 2 ~L~V~Vi~A~~L~~~d~~g~~DPyv~i~l~~------~~~kTkvi~~t~nP~WnE~f~f~v~~~~~~L~i~V~D~d~~~~ 75 (807)
.|.|+|++|++|+.++.+|.+||||++.++. .+++|+++++++||.|||+|.|.+.+....|.|.|||++.+++
T Consensus 9 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~ 88 (176)
T 3m7f_B 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTR 88 (176)
T ss_dssp EEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 99999997368987678989581899999887788651165761779999864666999975999979999998988778
Q ss_pred CCEEEEEEEECCCCCCCCCC---CCCCEEEECCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 95559899316300156889---986489995569989999723199999999925
Q 003624 76 DDFVGFLKIPVSRVFDADNK---SLPTAWHSLQPKNKKSKNKDCGEILLTISFSHN 128 (807)
Q Consensus 76 d~~lG~v~i~l~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~G~I~L~l~~~~~ 128 (807)
+++||++.|+|..+...... ....+||+|.++..+ ....|+|+|+++|.+.
T Consensus 89 d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 89 DDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK--SRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT--CCCCSEEEEEEEECC-
T ss_pred CCEEEEEEEEHHHCCCCCCCCCCCCCCCEEECCCCCCC--CCCCEEEEEEEEEEEC
T ss_conf 96779999998994556775454443117883356788--9657799999999809
No 9
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=155.00 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=100.9
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCC-CCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 7839999999957399999888888499999999667855168-999984957899992379996689999973789998
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNGKSRTSSIKF-QQCDPMWNEIFEYDAMDEPPSMLDVEVYDFDGPFNE 613 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~~~~~T~v~~-~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d~~~~~ 613 (807)
+.+.|+|+|++|++|+..|..|.+||||++.+++++++|++++ +++||+|||+|.|.+.. ....|.|+|||+|. +++
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~-~~~ 85 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDV-GTE 85 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSS-CTT
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEECC-CCCEEEEEEEECCC-CCC
T ss_conf 9689999999630898756577868269999999612107224999899417679999779-99889999997898-889
Q ss_pred CCCCEEEEEECEEC-CCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 85103699983004-6899411899577767575573079999996249
Q 003624 614 ATSLGHAEINFVKS-DISDLADVWIPLQGKLAQACQSKLHLRIFLNNTK 661 (807)
Q Consensus 614 dd~lG~~~i~l~~l-~~~~~~~~w~~L~~k~~~~~~G~l~l~i~~~~~~ 661 (807)
|++||++.+++.++ ..+...+.|++|. + +....|.|+|++.|....
T Consensus 86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~-~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 86 DDAVGEATIPLEPVFVEGSIPPTAYNVV-K-DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp TCCSEEEEEESHHHHHHSEEEEEEEEEE-E-TTEEEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEHHHHCCCCCCCCEEEEEE-C-CCCCCEEEEEEEEEEECC
T ss_conf 9638999998798245788886789964-3-985588999999998688
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.00 E-value=1 Score=154.69 Aligned_cols=122 Identities=21% Similarity=0.270 Sum_probs=93.7
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECC
Q ss_conf 7839999999957399999888888499999999------6678551689999849578999923799966899999737
Q 003624 535 DGWLLTVALIKGDNLAAVDSSGFCDPYVVFTCNG------KSRTSSIKFQQCDPMWNEIFEYDAMDEPPSMLDVEVYDFD 608 (807)
Q Consensus 535 ~~~~L~V~ii~a~~L~~~d~~g~sDPYv~i~~~~------~~~~T~v~~~t~nP~WnE~f~f~~~~~~~~~l~i~V~D~d 608 (807)
..+.|+|+|++|++|+..|..|.+||||++.+++ ..++|+++++++||+|||+|.|.+... ...|.|+|||+|
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~d 96 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDEN 96 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEECC
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCC-CCEEEEEEEECC
T ss_conf 7318999999856898888898978179999977888620004675065999989998899983398-898999999899
Q ss_pred CCCCCCCCCEEEEEECEECCCCCCE------EEEEECCCCCC-CCCCCEEEEEEEEE
Q ss_conf 8999885103699983004689941------18995777675-75573079999996
Q 003624 609 GPFNEATSLGHAEINFVKSDISDLA------DVWIPLQGKLA-QACQSKLHLRIFLN 658 (807)
Q Consensus 609 ~~~~~dd~lG~~~i~l~~l~~~~~~------~~w~~L~~k~~-~~~~G~l~l~i~~~ 658 (807)
. +++|++||++.|++.++..+... +.|++|..+.+ ....|.|+|++.|.
T Consensus 97 ~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 97 R-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp S-SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred C-CCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9-9689705999999899244798420024401031344557997435999999995
Done!