BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003625
(807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 204 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 263
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+VN ++F DG+ + S SDD +V
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTV 286
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA ++ IA + TV + + G ++ H++
Sbjct: 409 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSS 468
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTV 491
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 509
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 510 SVRGVAFSPDGQTIASASDDKTV 532
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 40 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 99
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 100 SVRGVAFSPDGQTIASASDDKTV 122
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 163 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTV 245
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 286 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTV 368
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVAER----MIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA R IA + TV + + G ++ H++
Sbjct: 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 304
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 305 SVWGVAFSPDGQTIASASDDKTV 327
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 41 YQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAV 96
+ R G L +L + ++S VA + IA + TV + + G ++ H+++V
Sbjct: 330 WNRNGQHLQTLTGH-SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 388
Query: 97 NDLSFDVDGEYVGSCSDDGSV 117
++F DG+ + S SDD +V
Sbjct: 389 RGVAFSPDGQTIASASDDKTV 409
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 81 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 140
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTV 163
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 39 LKYQRMGGSLPSLLANDAASCVAVA----ERMIALGTHAGTVHILDFLGNQVKEFPAHTA 94
+K G L L ++S VA + IA + TV + + G ++ H++
Sbjct: 122 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Query: 95 AVNDLSFDVDGEYVGSCSDDGSV 117
+V ++F DG+ + S SDD +V
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTV 204
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 74 GTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSV 117
T+ + D+ G+ + HT +V D+SFD G+ + SCS D ++
Sbjct: 130 ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 174
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 664 DLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEA 723
D ++ ++ +Y I + +L E I + A+ V+I +G+++ A
Sbjct: 1036 DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRA 1095
Query: 724 VEFVNMQHDDELWEELIKQCLNKPEMVGVLLEHTVGNLDP 763
EF ++ +W +L K L K MV ++ + DP
Sbjct: 1096 YEFAERCNEPAVWSQLAKAQLQKG-MVKEAIDSYIKADDP 1134
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPN 225
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 66 MIALGTHAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123
M G+ TV + D V+ + H +N + F DG+ G+ SDDG+ + +
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 124 TDEKMKFDYHR 134
T +++ Y+R
Sbjct: 280 TGHQLQV-YNR 289
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPN 227
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPN 209
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPN 199
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPN 203
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPN 209
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPN 204
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPN 203
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPN 220
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPN 202
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPN 209
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPN 208
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122
+I G+ +V I D G +K PAH+ V+ + F+ DG + S S DG I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 123 FTDEKMKF---DYHRPMKAISLDPD 144
+ + +K D + P+ + P+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 53 ANDAASCVAVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSC 111
A + C++ +A G G + I++ N+V H AV + F DG+ + S
Sbjct: 969 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 112 SDDGSVVI 119
S+D + +
Sbjct: 1029 SEDSVIQV 1036
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 53 ANDAASCVAVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSC 111
A + C++ +A G G + I++ N+V H AV + F DG+ + S
Sbjct: 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021
Query: 112 SDDGSVVI 119
S+D + +
Sbjct: 1022 SEDSVIQV 1029
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 449 LCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLR 489
+CP LR + +A R + H A RQ P L P+M T + R R
Sbjct: 173 ICPPSLRPANAAPARMMRHVATSRQCP-LEPWMYTRDTRQR 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,731,686
Number of Sequences: 62578
Number of extensions: 1076682
Number of successful extensions: 2361
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 75
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)