Query 003625
Match_columns 807
No_of_seqs 565 out of 3667
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2066 Vacuolar assembly/sort 100.0 2E-118 4E-123 950.9 67.4 740 34-806 19-762 (846)
2 KOG2114 Vacuolar assembly/sort 100.0 1.6E-47 3.4E-52 411.0 51.8 669 56-798 27-811 (933)
3 KOG2063 Vacuolar assembly/sort 100.0 1.9E-36 4.1E-41 339.5 48.4 411 376-806 289-812 (877)
4 KOG2034 Vacuolar sorting prote 100.0 4.3E-31 9.3E-36 287.8 25.3 410 371-797 335-786 (911)
5 KOG0271 Notchless-like WD40 re 99.9 3.5E-25 7.6E-30 218.1 20.7 162 57-219 118-287 (480)
6 KOG0263 Transcription initiati 99.9 1E-24 2.2E-29 234.7 23.1 198 41-257 447-652 (707)
7 KOG0273 Beta-transducin family 99.9 3.5E-23 7.7E-28 209.5 25.0 218 55-301 236-513 (524)
8 KOG0272 U4/U6 small nuclear ri 99.9 3.5E-24 7.5E-29 214.2 16.1 189 59-259 224-423 (459)
9 KOG0272 U4/U6 small nuclear ri 99.9 2.6E-24 5.6E-29 215.1 13.4 183 58-252 267-458 (459)
10 KOG0271 Notchless-like WD40 re 99.9 1.4E-23 3E-28 206.9 17.6 187 59-257 164-442 (480)
11 KOG0279 G protein beta subunit 99.9 8.1E-22 1.8E-26 187.4 27.2 226 59-336 22-265 (315)
12 KOG0291 WD40-repeat-containing 99.9 2.5E-21 5.3E-26 206.4 33.8 189 59-260 357-556 (893)
13 KOG0279 G protein beta subunit 99.9 7.5E-22 1.6E-26 187.7 24.3 188 59-257 70-265 (315)
14 KOG0263 Transcription initiati 99.9 1E-21 2.2E-26 211.7 21.1 188 60-259 386-612 (707)
15 smart00299 CLH Clathrin heavy 99.9 4.9E-22 1.1E-26 184.2 15.4 136 607-747 3-139 (140)
16 KOG0286 G-protein beta subunit 99.9 6E-21 1.3E-25 182.5 21.3 184 57-252 148-343 (343)
17 KOG0281 Beta-TrCP (transducin 99.9 9.6E-22 2.1E-26 191.4 13.9 209 37-262 217-436 (499)
18 KOG0286 G-protein beta subunit 99.9 4.7E-20 1E-24 176.5 25.1 216 59-301 62-293 (343)
19 KOG0291 WD40-repeat-containing 99.9 9.3E-20 2E-24 194.5 30.0 155 59-219 272-433 (893)
20 KOG0296 Angio-associated migra 99.9 7.7E-20 1.7E-24 180.1 27.0 155 59-219 71-231 (399)
21 KOG0284 Polyadenylation factor 99.9 1.1E-21 2.4E-26 195.4 13.4 187 59-257 145-340 (464)
22 KOG0285 Pleiotropic regulator 99.9 1E-20 2.2E-25 185.3 18.0 189 59-259 158-353 (460)
23 KOG0319 WD40-repeat-containing 99.9 1.3E-18 2.7E-23 185.9 32.9 210 36-257 345-580 (775)
24 KOG0315 G-protein beta subunit 99.9 1.2E-19 2.5E-24 169.8 21.6 205 37-259 75-293 (311)
25 KOG0276 Vesicle coat complex C 99.8 1.7E-19 3.6E-24 188.5 24.5 187 60-257 63-260 (794)
26 KOG0284 Polyadenylation factor 99.8 5E-21 1.1E-25 190.8 10.9 188 57-256 101-296 (464)
27 KOG0310 Conserved WD40 repeat- 99.8 6.4E-19 1.4E-23 180.1 26.2 215 59-301 75-299 (487)
28 KOG0315 G-protein beta subunit 99.8 5.4E-19 1.2E-23 165.4 23.1 194 57-256 45-247 (311)
29 KOG0281 Beta-TrCP (transducin 99.8 2.4E-20 5.1E-25 181.8 13.8 189 55-259 198-393 (499)
30 KOG0275 Conserved WD40 repeat- 99.8 3E-20 6.4E-25 179.4 13.9 187 59-255 220-424 (508)
31 KOG0295 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 179.0 17.9 203 45-259 139-369 (406)
32 KOG0266 WD40 repeat-containing 99.8 9.9E-19 2.1E-23 194.3 27.6 192 57-258 162-368 (456)
33 KOG0266 WD40 repeat-containing 99.8 5.8E-19 1.3E-23 196.1 25.6 191 58-257 209-412 (456)
34 KOG0772 Uncharacterized conser 99.8 4.2E-19 9E-24 181.8 21.5 193 59-258 174-398 (641)
35 KOG0645 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 165.3 22.5 188 57-255 19-226 (312)
36 PTZ00421 coronin; Provisional 99.8 1.8E-18 4E-23 191.2 27.9 188 59-257 82-293 (493)
37 KOG0277 Peroxisomal targeting 99.8 5.4E-20 1.2E-24 172.7 13.2 184 60-253 112-308 (311)
38 KOG0295 WD40 repeat-containing 99.8 3.5E-19 7.6E-24 175.4 17.8 227 60-335 116-366 (406)
39 KOG0282 mRNA splicing factor [ 99.8 2.2E-19 4.8E-24 183.0 15.6 196 57-257 217-465 (503)
40 KOG0265 U5 snRNP-specific prot 99.8 8.3E-19 1.8E-23 168.7 17.9 203 36-257 38-249 (338)
41 KOG0645 WD40 repeat protein [G 99.8 7.4E-18 1.6E-22 160.0 23.5 146 58-208 67-225 (312)
42 KOG0277 Peroxisomal targeting 99.8 4.3E-19 9.3E-24 166.6 15.0 188 59-257 67-268 (311)
43 PTZ00420 coronin; Provisional 99.8 6.3E-18 1.4E-22 187.7 26.0 187 59-256 81-295 (568)
44 KOG0985 Vesicle coat protein c 99.8 3.1E-18 6.7E-23 187.5 22.8 379 392-794 1047-1462(1666)
45 PTZ00420 coronin; Provisional 99.8 2.3E-17 5E-22 183.2 30.2 190 60-257 34-251 (568)
46 KOG0316 Conserved WD40 repeat- 99.8 2E-18 4.3E-23 160.3 17.6 188 59-259 24-218 (307)
47 PTZ00421 coronin; Provisional 99.8 2.6E-17 5.7E-22 182.1 29.1 160 88-257 70-248 (493)
48 cd00200 WD40 WD40 domain, foun 99.8 1.2E-16 2.6E-21 166.7 32.1 187 59-257 16-210 (289)
49 KOG0319 WD40-repeat-containing 99.8 1.9E-18 4E-23 184.6 16.9 178 64-253 424-618 (775)
50 KOG0318 WD40 repeat stress pro 99.8 1.2E-16 2.6E-21 164.5 29.5 192 57-257 64-311 (603)
51 KOG0273 Beta-transducin family 99.8 1.1E-17 2.3E-22 170.1 20.7 184 63-254 328-523 (524)
52 PLN00181 protein SPA1-RELATED; 99.8 3.8E-17 8.1E-22 195.6 29.0 188 59-256 539-740 (793)
53 KOG0299 U3 snoRNP-associated p 99.8 2E-17 4.4E-22 167.9 21.2 224 57-300 207-444 (479)
54 KOG0313 Microtubule binding pr 99.8 4.1E-17 8.8E-22 161.8 22.8 225 51-301 102-365 (423)
55 KOG0292 Vesicle coat complex C 99.8 1.3E-17 2.8E-22 180.8 20.9 191 59-258 58-284 (1202)
56 PF00637 Clathrin: Region in C 99.8 1.5E-20 3.3E-25 175.0 -1.3 137 607-748 3-140 (143)
57 KOG0283 WD40 repeat-containing 99.8 1.8E-17 3.9E-22 180.7 20.2 195 55-257 268-535 (712)
58 KOG0264 Nucleosome remodeling 99.8 2E-17 4.4E-22 168.1 19.0 195 58-256 183-406 (422)
59 KOG0313 Microtubule binding pr 99.8 1.3E-17 2.8E-22 165.2 16.9 185 57-253 196-417 (423)
60 KOG0285 Pleiotropic regulator 99.8 8.6E-18 1.9E-22 164.9 15.2 209 37-257 173-392 (460)
61 KOG0294 WD40 repeat-containing 99.8 9.8E-17 2.1E-21 155.5 22.1 188 56-257 45-240 (362)
62 KOG0318 WD40 repeat stress pro 99.8 7.6E-16 1.6E-20 158.7 29.6 186 59-257 197-395 (603)
63 KOG0643 Translation initiation 99.8 3.8E-16 8.3E-21 148.0 24.4 226 40-299 5-250 (327)
64 KOG0640 mRNA cleavage stimulat 99.8 1.6E-17 3.4E-22 160.1 15.1 190 58-257 118-338 (430)
65 KOG0292 Vesicle coat complex C 99.8 6.7E-17 1.5E-21 175.3 21.2 193 59-257 16-239 (1202)
66 KOG1332 Vesicle coat complex C 99.7 6.9E-17 1.5E-21 151.1 18.4 189 60-255 19-242 (299)
67 KOG0772 Uncharacterized conser 99.7 1.1E-16 2.5E-21 164.1 21.4 192 57-257 219-448 (641)
68 KOG0289 mRNA splicing factor [ 99.7 3E-16 6.5E-21 158.0 24.0 207 37-255 242-461 (506)
69 KOG0265 U5 snRNP-specific prot 99.7 1.6E-16 3.6E-21 153.0 20.7 190 60-257 98-299 (338)
70 KOG0305 Anaphase promoting com 99.7 1.4E-16 3E-21 169.8 21.5 187 55-256 218-421 (484)
71 KOG0269 WD40 repeat-containing 99.7 1.6E-17 3.5E-22 178.3 14.4 212 63-301 99-329 (839)
72 PLN00181 protein SPA1-RELATED; 99.7 7.1E-16 1.5E-20 184.6 30.0 185 59-256 490-692 (793)
73 KOG0316 Conserved WD40 repeat- 99.7 2.3E-16 5E-21 146.7 19.8 219 83-359 7-233 (307)
74 KOG0300 WD40 repeat-containing 99.7 1.2E-16 2.7E-21 154.2 18.3 189 60-257 280-479 (481)
75 KOG0293 WD40 repeat-containing 99.7 2.3E-16 5E-21 157.7 20.8 187 58-258 230-429 (519)
76 KOG0274 Cdc4 and related F-box 99.7 4.1E-16 8.8E-21 172.8 24.7 190 52-258 245-445 (537)
77 KOG0283 WD40 repeat-containing 99.7 6.5E-17 1.4E-21 176.5 17.9 192 57-257 372-579 (712)
78 cd00200 WD40 WD40 domain, foun 99.7 2.4E-15 5.1E-20 156.9 29.0 187 59-257 58-252 (289)
79 KOG1538 Uncharacterized conser 99.7 6.7E-14 1.5E-18 147.7 37.7 183 59-255 19-212 (1081)
80 KOG0302 Ribosome Assembly prot 99.7 1.9E-16 4.1E-21 156.9 17.4 185 63-257 164-381 (440)
81 KOG0282 mRNA splicing factor [ 99.7 4E-17 8.7E-22 166.7 13.0 197 44-252 246-503 (503)
82 KOG0276 Vesicle coat complex C 99.7 3.3E-16 7.2E-21 164.1 19.0 188 59-257 20-218 (794)
83 KOG0264 Nucleosome remodeling 99.7 9.5E-16 2.1E-20 156.1 21.6 185 63-257 136-350 (422)
84 KOG0973 Histone transcription 99.7 4.6E-16 9.9E-21 174.1 21.0 179 59-243 20-237 (942)
85 KOG2114 Vacuolar assembly/sort 99.7 4.9E-14 1.1E-18 153.9 35.1 188 598-790 384-591 (933)
86 KOG0641 WD40 repeat protein [G 99.7 1.8E-14 3.8E-19 133.1 26.3 199 57-257 37-264 (350)
87 KOG0647 mRNA export protein (c 99.7 5.9E-16 1.3E-20 149.3 17.2 176 59-243 34-311 (347)
88 KOG0278 Serine/threonine kinas 99.7 8.3E-17 1.8E-21 150.8 10.8 186 60-257 25-216 (334)
89 KOG2055 WD40 repeat protein [G 99.7 3.3E-15 7.1E-20 151.9 23.0 210 36-257 195-420 (514)
90 KOG0305 Anaphase promoting com 99.7 2.8E-15 6E-20 159.9 23.5 202 59-292 184-397 (484)
91 KOG0300 WD40 repeat-containing 99.7 1.3E-15 2.9E-20 147.1 18.8 205 36-259 181-433 (481)
92 KOG0296 Angio-associated migra 99.7 5.2E-15 1.1E-19 146.4 23.3 189 54-253 106-397 (399)
93 KOG0973 Histone transcription 99.7 1.2E-15 2.5E-20 170.9 20.5 188 59-256 76-357 (942)
94 KOG4283 Transcription-coupled 99.7 4E-15 8.7E-20 142.8 21.0 196 63-261 55-283 (397)
95 KOG0310 Conserved WD40 repeat- 99.7 2.2E-15 4.8E-20 154.5 20.5 182 57-251 115-306 (487)
96 KOG0274 Cdc4 and related F-box 99.7 1.5E-15 3.3E-20 168.3 21.0 188 55-256 209-402 (537)
97 KOG0270 WD40 repeat-containing 99.7 2.1E-15 4.6E-20 152.8 19.8 183 64-257 192-407 (463)
98 KOG0306 WD40-repeat-containing 99.7 5.4E-16 1.2E-20 166.0 16.2 186 57-254 417-664 (888)
99 KOG0299 U3 snoRNP-associated p 99.7 1.9E-15 4.2E-20 153.7 18.9 223 60-300 150-399 (479)
100 KOG0275 Conserved WD40 repeat- 99.7 4.2E-16 9.2E-21 150.9 13.1 195 54-257 263-470 (508)
101 KOG0270 WD40 repeat-containing 99.7 2.2E-15 4.7E-20 152.7 18.4 188 64-259 256-454 (463)
102 KOG0293 WD40 repeat-containing 99.7 9E-16 2E-20 153.5 15.2 187 57-255 317-514 (519)
103 KOG0302 Ribosome Assembly prot 99.7 2.2E-15 4.7E-20 149.4 17.2 149 57-210 216-380 (440)
104 KOG1446 Histone H3 (Lys4) meth 99.7 5.5E-14 1.2E-18 137.3 25.3 195 57-259 61-267 (311)
105 KOG0289 mRNA splicing factor [ 99.7 9.5E-15 2E-19 147.4 20.3 191 55-257 220-422 (506)
106 KOG0301 Phospholipase A2-activ 99.7 4.2E-15 9.2E-20 158.1 18.7 194 44-256 89-290 (745)
107 KOG2079 Vacuolar assembly/sort 99.7 1.5E-12 3.3E-17 145.5 39.3 258 543-805 802-1110(1206)
108 KOG0308 Conserved WD40 repeat- 99.6 1.3E-15 2.7E-20 160.9 14.2 185 62-257 35-246 (735)
109 KOG1332 Vesicle coat complex C 99.6 3.8E-15 8.2E-20 139.6 15.3 208 37-256 48-288 (299)
110 KOG0640 mRNA cleavage stimulat 99.6 3.9E-15 8.5E-20 143.7 15.8 194 59-259 179-388 (430)
111 KOG1407 WD40 repeat protein [F 99.6 8E-14 1.7E-18 132.1 23.9 197 41-257 60-264 (313)
112 KOG1036 Mitotic spindle checkp 99.6 3.9E-14 8.5E-19 137.5 21.8 146 57-210 16-165 (323)
113 KOG0301 Phospholipase A2-activ 99.6 1.1E-14 2.5E-19 154.9 19.1 174 63-254 70-249 (745)
114 KOG1273 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 142.0 15.9 199 59-259 30-285 (405)
115 KOG0288 WD40 repeat protein Ti 99.6 7.3E-15 1.6E-19 147.4 15.8 191 56-257 221-420 (459)
116 KOG0307 Vesicle coat complex C 99.6 4.1E-14 8.8E-19 159.4 23.4 190 59-258 123-331 (1049)
117 KOG4328 WD40 protein [Function 99.6 3.2E-14 6.9E-19 144.7 20.4 188 58-254 192-399 (498)
118 KOG0269 WD40 repeat-containing 99.6 3.6E-15 7.8E-20 160.5 14.3 181 59-250 140-336 (839)
119 KOG0294 WD40 repeat-containing 99.6 1E-13 2.2E-18 134.8 21.3 189 55-257 84-284 (362)
120 KOG0268 Sof1-like rRNA process 99.6 8.6E-15 1.9E-19 144.5 13.2 186 55-257 67-262 (433)
121 KOG0267 Microtubule severing p 99.6 1.9E-15 4E-20 161.4 8.8 178 59-248 77-261 (825)
122 KOG0649 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 129.7 19.0 192 58-259 16-240 (325)
123 KOG0278 Serine/threonine kinas 99.6 1.7E-14 3.7E-19 135.4 13.5 188 58-259 106-302 (334)
124 KOG0646 WD40 repeat protein [G 99.6 5.1E-14 1.1E-18 143.8 17.8 217 36-257 60-310 (476)
125 KOG0646 WD40 repeat protein [G 99.6 3.6E-14 7.7E-19 144.9 15.9 168 46-218 113-317 (476)
126 KOG2048 WD40 repeat protein [G 99.6 3.7E-13 8E-18 143.4 23.3 194 56-257 27-236 (691)
127 KOG0308 Conserved WD40 repeat- 99.6 2.9E-14 6.3E-19 150.7 14.8 184 61-256 82-287 (735)
128 KOG1274 WD40 repeat protein [G 99.6 2.5E-13 5.3E-18 149.4 22.5 193 57-257 18-221 (933)
129 KOG2445 Nuclear pore complex c 99.6 1.1E-12 2.4E-17 127.2 24.2 191 59-256 20-258 (361)
130 KOG0267 Microtubule severing p 99.6 4.1E-15 8.9E-20 158.8 7.7 182 63-256 39-228 (825)
131 KOG2096 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 132.5 18.1 194 57-257 89-363 (420)
132 KOG0639 Transducin-like enhanc 99.5 3.5E-14 7.6E-19 145.4 12.8 183 57-253 514-703 (705)
133 KOG1539 WD repeat protein [Gen 99.5 1.7E-13 3.6E-18 148.9 18.5 185 57-254 453-648 (910)
134 KOG0288 WD40 repeat protein Ti 99.5 3.7E-14 7.9E-19 142.4 11.5 187 57-257 180-374 (459)
135 KOG1274 WD40 repeat protein [G 99.5 9.9E-13 2.1E-17 144.7 23.1 193 53-255 55-263 (933)
136 KOG0307 Vesicle coat complex C 99.5 6.7E-12 1.5E-16 141.8 30.0 188 59-257 71-287 (1049)
137 KOG0306 WD40-repeat-containing 99.5 1.6E-13 3.4E-18 147.3 15.9 148 57-210 511-666 (888)
138 KOG1446 Histone H3 (Lys4) meth 99.5 2.2E-12 4.8E-17 126.1 21.9 197 47-256 91-305 (311)
139 KOG0641 WD40 repeat protein [G 99.5 1.9E-12 4.1E-17 119.8 19.6 186 57-254 94-349 (350)
140 KOG4378 Nuclear protein COP1 [ 99.5 7.7E-13 1.7E-17 135.6 17.6 186 63-259 90-285 (673)
141 KOG1407 WD40 repeat protein [F 99.5 2.9E-12 6.3E-17 121.6 20.1 196 35-243 87-290 (313)
142 KOG0303 Actin-binding protein 99.5 5.8E-13 1.3E-17 133.1 15.1 186 61-257 41-252 (472)
143 KOG1036 Mitotic spindle checkp 99.5 1.6E-12 3.4E-17 126.5 17.4 180 55-245 55-294 (323)
144 KOG2445 Nuclear pore complex c 99.5 9.2E-12 2E-16 120.9 21.6 164 90-257 10-210 (361)
145 KOG1188 WD40 repeat protein [G 99.5 3.6E-12 7.7E-17 125.6 19.0 225 65-300 41-285 (376)
146 KOG1034 Transcriptional repres 99.5 4.8E-13 1E-17 130.8 12.7 198 57-259 94-342 (385)
147 KOG1524 WD40 repeat-containing 99.5 1.5E-12 3.2E-17 134.7 16.3 176 65-254 76-255 (737)
148 KOG1063 RNA polymerase II elon 99.5 2.6E-12 5.5E-17 137.2 18.3 191 59-254 532-763 (764)
149 KOG2055 WD40 repeat protein [G 99.4 1.7E-12 3.6E-17 132.4 15.4 187 59-254 310-512 (514)
150 KOG2048 WD40 repeat protein [G 99.4 1.1E-10 2.3E-15 124.9 29.2 210 58-280 75-301 (691)
151 KOG0268 Sof1-like rRNA process 99.4 7.3E-13 1.6E-17 131.0 11.8 171 76-256 169-347 (433)
152 KOG0647 mRNA export protein (c 99.4 7.7E-12 1.7E-16 121.2 18.3 153 90-257 24-187 (347)
153 KOG0321 WD40 repeat-containing 99.4 5.6E-12 1.2E-16 133.4 18.7 190 64-257 64-304 (720)
154 KOG0303 Actin-binding protein 99.4 3.6E-12 7.8E-17 127.5 16.4 185 59-257 88-297 (472)
155 KOG1524 WD40 repeat-containing 99.4 8.3E-12 1.8E-16 129.3 19.4 169 60-253 112-285 (737)
156 KOG2096 WD40 repeat protein [G 99.4 4.6E-12 9.9E-17 123.3 16.1 183 60-252 195-400 (420)
157 KOG1408 WD40 repeat protein [F 99.4 1.5E-12 3.2E-17 138.8 13.8 187 57-255 464-714 (1080)
158 KOG0643 Translation initiation 99.4 3.9E-11 8.5E-16 114.4 21.5 157 88-257 5-180 (327)
159 KOG0642 Cell-cycle nuclear pro 99.4 4.8E-12 1E-16 132.5 15.8 188 59-257 301-564 (577)
160 KOG2919 Guanine nucleotide-bin 99.4 1.3E-11 2.9E-16 120.5 15.8 185 62-257 121-330 (406)
161 KOG0290 Conserved WD40 repeat- 99.4 2.5E-11 5.5E-16 116.9 17.4 190 57-251 153-362 (364)
162 KOG1445 Tumor-specific antigen 99.4 1.7E-11 3.8E-16 129.1 16.9 199 48-257 621-847 (1012)
163 KOG0649 WD40 repeat protein [G 99.4 1.6E-10 3.5E-15 108.6 21.3 196 36-254 53-274 (325)
164 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 8.9E-10 1.9E-14 116.5 30.3 192 58-257 36-240 (300)
165 KOG4283 Transcription-coupled 99.3 6.2E-11 1.3E-15 114.4 17.8 149 60-212 109-280 (397)
166 KOG0771 Prolactin regulatory e 99.3 2.6E-11 5.7E-16 123.1 15.2 196 55-257 147-357 (398)
167 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1E-09 2.2E-14 116.1 26.5 187 57-257 77-282 (300)
168 KOG0639 Transducin-like enhanc 99.3 2.1E-11 4.6E-16 125.3 12.3 184 60-257 473-666 (705)
169 KOG4328 WD40 protein [Function 99.3 7.5E-11 1.6E-15 120.5 16.0 193 60-257 242-453 (498)
170 KOG2106 Uncharacterized conser 99.3 9.7E-10 2.1E-14 113.6 24.2 184 57-259 249-482 (626)
171 KOG0650 WD40 repeat nucleolar 99.3 8E-11 1.7E-15 123.8 15.9 162 86-257 393-598 (733)
172 KOG1007 WD repeat protein TSSC 99.3 1.8E-10 4E-15 110.9 16.6 191 57-253 126-360 (370)
173 KOG1587 Cytoplasmic dynein int 99.3 2.8E-10 6E-15 125.6 20.3 190 57-257 245-475 (555)
174 KOG1408 WD40 repeat protein [F 99.3 1.5E-10 3.4E-15 123.7 17.5 193 66-261 394-633 (1080)
175 KOG0321 WD40 repeat-containing 99.3 7.1E-11 1.5E-15 125.3 14.7 193 59-259 107-352 (720)
176 KOG2066 Vacuolar assembly/sort 99.3 9E-08 1.9E-12 105.1 38.3 135 63-208 82-233 (846)
177 KOG1034 Transcriptional repres 99.2 6E-11 1.3E-15 116.3 12.0 184 60-254 143-383 (385)
178 KOG1523 Actin-related protein 99.2 1.1E-09 2.4E-14 107.4 20.3 192 56-256 12-238 (361)
179 KOG0650 WD40 repeat nucleolar 99.2 4.4E-10 9.6E-15 118.3 17.9 188 57-257 403-640 (733)
180 KOG4378 Nuclear protein COP1 [ 99.2 4.2E-10 9E-15 115.9 17.0 188 59-257 39-242 (673)
181 KOG1009 Chromatin assembly com 99.2 6.5E-10 1.4E-14 112.2 15.8 102 57-163 70-190 (434)
182 KOG1273 WD40 repeat protein [G 99.2 9.8E-10 2.1E-14 107.2 15.8 153 96-257 26-186 (405)
183 KOG2106 Uncharacterized conser 99.2 4.8E-09 1E-13 108.6 21.3 142 58-207 374-520 (626)
184 KOG2919 Guanine nucleotide-bin 99.2 1.4E-09 3E-14 106.6 16.5 201 36-248 133-363 (406)
185 KOG4227 WD40 repeat protein [G 99.1 2.2E-09 4.7E-14 107.4 18.0 146 59-209 63-226 (609)
186 KOG1272 WD40-repeat-containing 99.1 9E-11 1.9E-15 120.1 8.4 156 86-255 203-363 (545)
187 KOG1539 WD repeat protein [Gen 99.1 3.8E-09 8.2E-14 115.7 21.1 194 57-256 162-367 (910)
188 KOG1009 Chromatin assembly com 99.1 2.8E-10 6E-15 114.8 11.1 149 60-214 21-201 (434)
189 KOG1445 Tumor-specific antigen 99.1 1E-09 2.2E-14 116.1 15.6 184 63-257 42-251 (1012)
190 KOG1007 WD repeat protein TSSC 99.1 6.7E-10 1.4E-14 107.1 12.7 145 59-208 177-361 (370)
191 KOG0642 Cell-cycle nuclear pro 99.1 8.6E-10 1.9E-14 115.9 14.4 173 32-217 331-570 (577)
192 PF08662 eIF2A: Eukaryotic tra 99.1 7.6E-09 1.7E-13 100.9 20.3 148 58-215 11-185 (194)
193 PRK01742 tolB translocation pr 99.1 8.6E-09 1.9E-13 114.5 23.2 182 58-255 209-402 (429)
194 KOG2394 WD40 protein DMR-N9 [G 99.1 1E-09 2.2E-14 114.4 14.2 131 55-191 220-384 (636)
195 KOG2394 WD40 protein DMR-N9 [G 99.1 3.2E-10 7E-15 118.0 10.4 168 36-213 281-457 (636)
196 KOG1310 WD40 repeat protein [G 99.1 8.7E-10 1.9E-14 114.9 13.5 167 87-256 44-233 (758)
197 KOG1188 WD40 repeat protein [G 99.1 5.2E-09 1.1E-13 103.6 17.3 153 63-219 83-253 (376)
198 KOG1538 Uncharacterized conser 99.1 2.3E-09 5E-14 114.0 15.3 198 38-251 35-249 (1081)
199 KOG1963 WD40 repeat protein [G 99.1 7.1E-09 1.5E-13 114.7 19.5 104 57-165 210-319 (792)
200 KOG1240 Protein kinase contain 99.1 7.9E-09 1.7E-13 117.6 20.3 211 42-257 1034-1337(1431)
201 KOG1517 Guanine nucleotide bin 99.0 6.1E-09 1.3E-13 116.7 17.9 190 63-257 1122-1336(1387)
202 KOG0290 Conserved WD40 repeat- 99.0 5.6E-09 1.2E-13 101.0 14.7 187 59-257 103-321 (364)
203 KOG0985 Vesicle coat protein c 99.0 1.7E-07 3.7E-12 104.8 27.1 346 429-795 1251-1610(1666)
204 KOG1063 RNA polymerase II elon 99.0 3.7E-09 8.1E-14 113.5 13.5 159 87-254 519-699 (764)
205 KOG1517 Guanine nucleotide bin 99.0 1.5E-08 3.2E-13 113.7 18.1 198 56-257 1169-1384(1387)
206 KOG1240 Protein kinase contain 99.0 1.9E-08 4.1E-13 114.7 18.8 189 79-276 1034-1247(1431)
207 KOG0644 Uncharacterized conser 99.0 2E-10 4.2E-15 125.2 2.9 115 87-208 184-300 (1113)
208 KOG2110 Uncharacterized conser 99.0 1.4E-07 3E-12 94.7 22.6 187 57-257 49-251 (391)
209 KOG2139 WD40 repeat protein [G 99.0 1.1E-07 2.3E-12 95.0 21.1 144 57-208 143-309 (445)
210 KOG1310 WD40 repeat protein [G 99.0 8.4E-09 1.8E-13 107.7 14.0 146 59-208 57-231 (758)
211 COG2319 FOG: WD40 repeat [Gene 99.0 1.3E-07 2.8E-12 104.4 24.7 190 58-257 161-362 (466)
212 KOG0644 Uncharacterized conser 99.0 1.3E-09 2.8E-14 118.9 8.1 104 57-169 193-301 (1113)
213 PRK01742 tolB translocation pr 98.9 3.4E-08 7.4E-13 109.7 19.2 171 73-257 183-364 (429)
214 KOG1523 Actin-related protein 98.9 1.6E-08 3.4E-13 99.4 13.9 150 57-211 60-239 (361)
215 KOG0322 G-protein beta subunit 98.9 1E-08 2.2E-13 98.1 11.6 136 107-253 167-322 (323)
216 KOG2111 Uncharacterized conser 98.9 1.1E-06 2.4E-11 86.8 26.0 173 74-257 75-259 (346)
217 PRK05137 tolB translocation pr 98.9 4.6E-07 1E-11 101.1 26.9 169 74-254 182-366 (435)
218 PRK03629 tolB translocation pr 98.9 3E-07 6.5E-12 102.0 25.0 184 58-254 204-406 (429)
219 KOG2139 WD40 repeat protein [G 98.9 1.8E-07 3.9E-12 93.5 20.3 190 57-259 103-314 (445)
220 KOG2321 WD40 repeat protein [G 98.9 3.3E-08 7.2E-13 104.1 15.8 176 67-254 148-343 (703)
221 PF08662 eIF2A: Eukaryotic tra 98.9 3.5E-08 7.6E-13 96.2 15.0 102 59-167 66-178 (194)
222 COG2319 FOG: WD40 repeat [Gene 98.9 2.3E-07 5.1E-12 102.3 23.5 186 59-257 72-274 (466)
223 PRK05137 tolB translocation pr 98.9 2.9E-07 6.2E-12 102.7 24.0 171 58-243 207-394 (435)
224 KOG0322 G-protein beta subunit 98.9 9.1E-09 2E-13 98.3 9.9 147 55-207 151-322 (323)
225 PRK04922 tolB translocation pr 98.9 3.5E-07 7.6E-12 101.9 24.4 182 59-253 210-410 (433)
226 KOG2321 WD40 repeat protein [G 98.9 7.6E-08 1.6E-12 101.5 17.1 189 59-258 58-306 (703)
227 PRK11028 6-phosphogluconolacto 98.9 1.8E-06 4E-11 92.7 28.7 194 57-257 39-261 (330)
228 PRK02889 tolB translocation pr 98.9 6.6E-07 1.4E-11 99.3 25.8 172 74-257 176-363 (427)
229 KOG2110 Uncharacterized conser 98.8 2E-07 4.3E-12 93.7 18.3 151 54-211 87-251 (391)
230 PRK02889 tolB translocation pr 98.8 5.1E-07 1.1E-11 100.2 23.9 173 58-243 201-388 (427)
231 KOG1587 Cytoplasmic dynein int 98.8 6.7E-08 1.4E-12 107.0 16.2 181 65-256 306-518 (555)
232 KOG2111 Uncharacterized conser 98.8 3.6E-07 7.8E-12 90.1 18.8 107 57-168 139-256 (346)
233 KOG1272 WD40-repeat-containing 98.8 1.3E-08 2.8E-13 104.5 7.6 186 59-257 136-326 (545)
234 KOG4227 WD40 repeat protein [G 98.8 8.5E-08 1.8E-12 96.2 12.8 162 87-258 50-229 (609)
235 PF04053 Coatomer_WDAD: Coatom 98.8 5.2E-05 1.1E-09 83.0 35.1 284 91-449 30-317 (443)
236 KOG0974 WD-repeat protein WDR6 98.7 5.9E-08 1.3E-12 109.4 12.1 141 61-210 142-290 (967)
237 PRK04922 tolB translocation pr 98.7 1.5E-06 3.2E-11 96.9 23.3 170 74-257 184-371 (433)
238 PF04762 IKI3: IKI3 family; I 98.7 0.0001 2.2E-09 88.4 39.0 149 57-210 261-458 (928)
239 KOG3881 Uncharacterized conser 98.7 1.2E-06 2.5E-11 88.8 18.7 190 57-257 108-323 (412)
240 PRK03629 tolB translocation pr 98.7 6.4E-06 1.4E-10 91.4 26.8 169 75-257 180-366 (429)
241 PRK11028 6-phosphogluconolacto 98.7 3.1E-06 6.7E-11 90.9 23.0 177 68-255 6-206 (330)
242 KOG4497 Uncharacterized conser 98.7 2E-06 4.2E-11 85.1 18.8 95 59-158 55-153 (447)
243 KOG3881 Uncharacterized conser 98.6 3.8E-07 8.1E-12 92.3 13.4 147 63-215 160-327 (412)
244 KOG1920 IkappaB kinase complex 98.6 0.0008 1.7E-08 78.3 41.1 106 57-167 200-321 (1265)
245 KOG3621 WD40 repeat-containing 98.6 4.6E-06 9.9E-11 90.9 21.9 150 57-211 38-200 (726)
246 KOG1963 WD40 repeat protein [G 98.6 2.3E-06 5.1E-11 95.3 20.2 193 57-257 165-378 (792)
247 KOG0771 Prolactin regulatory e 98.6 5.6E-07 1.2E-11 92.1 14.1 153 97-257 148-314 (398)
248 TIGR02800 propeller_TolB tol-p 98.6 3.8E-06 8.3E-11 93.5 21.8 168 74-255 170-355 (417)
249 TIGR02800 propeller_TolB tol-p 98.6 5.5E-06 1.2E-10 92.2 22.6 147 59-212 196-358 (417)
250 PRK00178 tolB translocation pr 98.6 1.3E-05 2.9E-10 89.4 24.8 182 59-253 205-403 (430)
251 KOG4497 Uncharacterized conser 98.6 9.4E-06 2E-10 80.4 20.0 187 57-255 96-392 (447)
252 KOG0280 Uncharacterized conser 98.5 1.9E-06 4.2E-11 84.1 14.6 192 59-256 128-335 (339)
253 KOG0974 WD-repeat protein WDR6 98.5 1.3E-06 2.8E-11 98.8 15.4 186 62-259 97-293 (967)
254 KOG1334 WD40 repeat protein [G 98.5 1.1E-06 2.3E-11 91.3 13.5 236 59-300 149-413 (559)
255 KOG1064 RAVE (regulator of V-A 98.5 3.5E-07 7.5E-12 108.1 10.1 179 57-257 2211-2401(2439)
256 KOG4547 WD40 repeat-containing 98.5 5.1E-06 1.1E-10 88.8 17.9 139 63-209 69-221 (541)
257 KOG3914 WD repeat protein WDR4 98.5 1.3E-06 2.9E-11 89.0 12.2 155 59-218 69-233 (390)
258 PRK04792 tolB translocation pr 98.5 2.4E-05 5.2E-10 87.3 23.1 150 58-212 223-386 (448)
259 PRK01029 tolB translocation pr 98.5 1.8E-05 4E-10 87.4 22.0 187 59-257 191-406 (428)
260 PRK04792 tolB translocation pr 98.5 6.4E-05 1.4E-09 83.9 26.3 168 75-254 199-380 (448)
261 KOG2041 WD40 repeat protein [G 98.4 0.0055 1.2E-07 67.3 47.7 99 59-162 21-139 (1189)
262 PRK00178 tolB translocation pr 98.4 2.5E-05 5.4E-10 87.3 22.5 169 75-257 180-366 (430)
263 KOG4547 WD40 repeat-containing 98.4 2.9E-05 6.3E-10 83.2 19.1 182 62-256 3-222 (541)
264 PF00400 WD40: WD domain, G-be 98.3 1E-06 2.3E-11 61.0 5.4 38 84-121 2-39 (39)
265 KOG1409 Uncharacterized conser 98.3 5E-06 1.1E-10 82.9 11.9 95 67-166 168-268 (404)
266 KOG1334 WD40 repeat protein [G 98.3 2.1E-06 4.6E-11 89.2 9.4 172 87-261 136-319 (559)
267 KOG4532 WD40-like repeat conta 98.3 4.9E-05 1.1E-09 73.5 17.6 185 67-257 131-334 (344)
268 KOG1354 Serine/threonine prote 98.3 9.9E-06 2.2E-10 80.8 13.3 194 59-257 91-362 (433)
269 KOG1354 Serine/threonine prote 98.3 2.1E-05 4.6E-10 78.5 15.5 197 55-257 26-304 (433)
270 KOG1409 Uncharacterized conser 98.3 3E-05 6.6E-10 77.5 16.1 174 32-210 43-272 (404)
271 PF02239 Cytochrom_D1: Cytochr 98.3 9.2E-05 2E-09 79.8 21.2 181 64-257 5-205 (369)
272 KOG2695 WD40 repeat protein [G 98.2 6.1E-06 1.3E-10 82.3 10.0 164 63-234 224-400 (425)
273 KOG1064 RAVE (regulator of V-A 98.2 4.5E-06 9.7E-11 99.2 9.4 166 35-217 2230-2407(2439)
274 KOG1275 PAB-dependent poly(A) 98.2 2.8E-05 6.1E-10 86.9 14.9 146 57-208 180-342 (1118)
275 KOG0280 Uncharacterized conser 98.2 3.3E-05 7.2E-10 75.7 13.2 181 66-257 87-287 (339)
276 KOG4714 Nucleoporin [Nuclear s 98.1 2.3E-05 4.9E-10 75.5 10.8 147 58-209 95-255 (319)
277 PLN02919 haloacid dehalogenase 98.1 0.00068 1.5E-08 83.0 26.4 193 58-257 629-891 (1057)
278 PF05131 Pep3_Vps18: Pep3/Vps1 98.1 1.3E-05 2.8E-10 73.1 8.7 66 372-440 81-147 (147)
279 PF10366 Vps39_1: Vacuolar sor 98.0 1.3E-05 2.7E-10 69.2 6.9 91 492-594 1-108 (108)
280 KOG4190 Uncharacterized conser 98.0 8.7E-06 1.9E-10 85.5 7.0 151 63-217 746-915 (1034)
281 PF10282 Lactonase: Lactonase, 98.0 0.005 1.1E-07 66.3 28.3 187 59-256 93-324 (345)
282 KOG4532 WD40-like repeat conta 98.0 0.0004 8.8E-09 67.3 17.0 187 64-257 84-285 (344)
283 PF11768 DUF3312: Protein of u 98.0 0.029 6.2E-07 61.3 32.8 104 180-291 258-366 (545)
284 COG4946 Uncharacterized protei 97.9 0.00086 1.9E-08 70.0 19.3 148 60-215 327-484 (668)
285 PF10367 Vps39_2: Vacuolar sor 97.9 1.8E-05 3.9E-10 69.5 6.2 55 752-806 2-56 (109)
286 PRK04043 tolB translocation pr 97.9 0.0019 4.2E-08 71.0 23.3 182 58-254 193-398 (419)
287 COG2706 3-carboxymuconate cycl 97.9 0.0042 9E-08 63.4 23.1 192 58-257 94-324 (346)
288 PF11768 DUF3312: Protein of u 97.9 0.00012 2.6E-09 79.2 13.0 84 91-179 257-340 (545)
289 KOG4190 Uncharacterized conser 97.9 3.1E-05 6.8E-10 81.5 7.3 163 86-257 728-909 (1034)
290 KOG3914 WD repeat protein WDR4 97.8 0.00021 4.6E-09 73.3 12.7 155 95-259 64-228 (390)
291 smart00299 CLH Clathrin heavy 97.8 0.00012 2.6E-09 67.5 9.8 112 458-581 7-123 (140)
292 COG4946 Uncharacterized protei 97.8 0.00088 1.9E-08 69.9 16.4 103 60-167 367-476 (668)
293 PF02239 Cytochrom_D1: Cytochr 97.8 0.0019 4.2E-08 69.7 20.1 156 57-218 41-212 (369)
294 PF00637 Clathrin: Region in C 97.8 4.9E-06 1.1E-10 77.2 -0.0 118 458-586 7-128 (143)
295 PRK01029 tolB translocation pr 97.8 0.00034 7.5E-09 77.4 14.5 126 58-190 286-423 (428)
296 PLN02919 haloacid dehalogenase 97.8 0.0016 3.5E-08 79.9 21.3 148 58-212 688-892 (1057)
297 PF10282 Lactonase: Lactonase, 97.8 0.048 1E-06 58.8 30.6 194 57-255 41-276 (345)
298 KOG0309 Conserved WD40 repeat- 97.7 0.00012 2.7E-09 80.0 9.5 146 59-209 74-233 (1081)
299 COG5170 CDC55 Serine/threonine 97.7 0.00056 1.2E-08 67.6 13.1 207 47-259 19-314 (460)
300 PF10366 Vps39_1: Vacuolar sor 97.7 0.00023 4.9E-09 61.5 9.2 65 654-718 3-67 (108)
301 PF04762 IKI3: IKI3 family; I 97.7 0.0052 1.1E-07 74.0 24.0 192 55-256 76-335 (928)
302 PF04053 Coatomer_WDAD: Coatom 97.7 0.0065 1.4E-07 66.8 22.7 379 58-584 38-432 (443)
303 KOG2315 Predicted translation 97.7 0.0043 9.3E-08 66.6 20.0 178 60-256 173-392 (566)
304 KOG0309 Conserved WD40 repeat- 97.7 0.00018 3.9E-09 78.8 10.0 189 57-257 29-235 (1081)
305 PRK04043 tolB translocation pr 97.7 0.0076 1.6E-07 66.4 22.8 133 74-214 169-315 (419)
306 KOG2695 WD40 repeat protein [G 97.7 0.00015 3.2E-09 72.7 8.4 150 100-258 218-380 (425)
307 KOG2315 Predicted translation 97.6 0.0035 7.6E-08 67.2 18.2 154 50-214 214-395 (566)
308 PF07433 DUF1513: Protein of u 97.6 0.0079 1.7E-07 61.4 19.6 173 59-247 57-278 (305)
309 KOG4714 Nucleoporin [Nuclear s 97.6 0.00028 6.1E-09 68.1 8.2 70 95-168 181-254 (319)
310 KOG1912 WD40 repeat protein [G 97.5 0.00014 3.1E-09 80.0 6.5 186 66-260 439-662 (1062)
311 PF00400 WD40: WD domain, G-be 97.5 0.00037 8.1E-09 47.9 5.9 34 128-166 5-39 (39)
312 KOG2079 Vacuolar assembly/sort 97.4 0.23 5E-06 58.0 30.3 327 376-715 410-826 (1206)
313 KOG2041 WD40 repeat protein [G 97.4 0.0053 1.2E-07 67.4 16.3 71 92-167 13-100 (1189)
314 PF08450 SGL: SMP-30/Gluconola 97.4 0.074 1.6E-06 54.2 24.4 180 59-254 6-213 (246)
315 KOG0882 Cyclophilin-related pe 97.4 0.0013 2.8E-08 68.4 10.6 203 55-257 10-234 (558)
316 KOG1920 IkappaB kinase complex 97.4 0.017 3.8E-07 67.7 20.7 189 56-255 70-323 (1265)
317 TIGR03300 assembly_YfgL outer 97.4 0.021 4.6E-07 62.5 21.2 187 62-257 63-262 (377)
318 PF08450 SGL: SMP-30/Gluconola 97.3 0.06 1.3E-06 54.9 22.9 159 63-235 50-233 (246)
319 KOG4640 Anaphase-promoting com 97.3 0.00065 1.4E-08 73.8 8.0 88 57-144 25-116 (665)
320 PF15492 Nbas_N: Neuroblastoma 97.3 0.035 7.5E-07 55.2 18.9 98 57-159 48-168 (282)
321 KOG2063 Vacuolar assembly/sort 97.3 0.0021 4.5E-08 74.7 12.0 149 651-800 464-631 (877)
322 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.25 5.4E-06 52.5 26.4 142 60-210 53-225 (352)
323 PF08553 VID27: VID27 cytoplas 97.2 0.018 3.9E-07 66.8 19.3 145 105-255 493-648 (794)
324 KOG3617 WD40 and TPR repeat-co 97.2 0.0012 2.6E-08 73.6 9.3 106 57-168 20-131 (1416)
325 PF07433 DUF1513: Protein of u 97.2 0.096 2.1E-06 53.7 22.2 212 59-296 11-271 (305)
326 COG2706 3-carboxymuconate cycl 97.2 0.06 1.3E-06 55.2 20.4 176 73-256 15-223 (346)
327 PLN03218 maturation of RBCL 1; 97.2 0.32 7E-06 59.8 30.6 155 398-569 375-534 (1060)
328 PLN03077 Protein ECB2; Provisi 97.2 0.17 3.6E-06 62.0 28.7 292 394-715 254-579 (857)
329 TIGR03300 assembly_YfgL outer 97.2 0.027 5.9E-07 61.6 19.9 175 64-251 190-376 (377)
330 KOG1832 HIV-1 Vpr-binding prot 97.2 0.00032 7E-09 78.3 4.5 176 59-257 1108-1294(1516)
331 COG5170 CDC55 Serine/threonine 97.2 0.0021 4.6E-08 63.6 9.6 125 90-219 169-321 (460)
332 KOG2395 Protein involved in va 97.2 0.028 6.1E-07 60.2 18.1 133 68-208 350-500 (644)
333 PLN03218 maturation of RBCL 1; 97.1 0.18 3.9E-06 61.9 27.4 293 401-715 414-744 (1060)
334 PF04841 Vps16_N: Vps16, N-ter 97.1 0.12 2.7E-06 56.8 23.7 67 57-124 33-110 (410)
335 PF13360 PQQ_2: PQQ-like domai 97.1 0.025 5.5E-07 57.2 17.2 182 60-257 32-233 (238)
336 PF00780 CNH: CNH domain; Int 97.1 0.076 1.7E-06 55.2 21.0 151 59-216 2-173 (275)
337 KOG1008 Uncharacterized conser 97.1 0.00019 4.1E-09 77.6 1.2 185 64-257 70-278 (783)
338 KOG1912 WD40 repeat protein [G 97.1 0.012 2.7E-07 65.3 14.9 180 66-255 81-305 (1062)
339 PLN03081 pentatricopeptide (PP 97.0 0.39 8.5E-06 57.3 29.0 294 395-715 89-416 (697)
340 KOG2314 Translation initiation 97.0 0.021 4.5E-07 61.3 15.3 168 57-243 215-411 (698)
341 smart00320 WD40 WD40 repeats. 97.0 0.0018 4E-08 43.3 5.3 38 84-121 3-40 (40)
342 KOG2314 Translation initiation 96.9 0.074 1.6E-06 57.3 18.5 106 97-210 214-336 (698)
343 PLN03077 Protein ECB2; Provisi 96.9 0.5 1.1E-05 57.9 28.9 109 541-663 322-437 (857)
344 KOG1645 RING-finger-containing 96.9 0.038 8.2E-07 57.2 15.5 65 59-124 200-267 (463)
345 PF13360 PQQ_2: PQQ-like domai 96.8 0.22 4.7E-06 50.3 20.8 137 73-218 2-150 (238)
346 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0015 3.3E-08 73.1 5.0 158 86-257 1094-1258(1516)
347 KOG3616 Selective LIM binding 96.7 0.2 4.4E-06 55.8 20.6 255 391-718 555-819 (1636)
348 PLN03081 pentatricopeptide (PP 96.7 0.53 1.2E-05 56.1 26.7 28 542-569 290-317 (697)
349 TIGR02658 TTQ_MADH_Hv methylam 96.7 1.1 2.3E-05 47.8 31.6 173 74-257 27-226 (352)
350 KOG1645 RING-finger-containing 96.7 0.0045 9.8E-08 63.7 7.6 82 87-172 187-270 (463)
351 PRK11138 outer membrane biogen 96.7 0.94 2E-05 49.8 26.4 181 63-257 119-315 (394)
352 PF08553 VID27: VID27 cytoplas 96.7 0.042 9.1E-07 63.9 15.8 131 71-208 501-647 (794)
353 KOG4640 Anaphase-promoting com 96.6 0.0068 1.5E-07 66.1 8.6 92 94-190 21-114 (665)
354 TIGR02917 PEP_TPR_lipo putativ 96.6 0.74 1.6E-05 56.5 27.7 25 543-567 636-660 (899)
355 KOG2076 RNA polymerase III tra 96.5 0.12 2.6E-06 59.3 17.4 181 526-715 298-508 (895)
356 COG5354 Uncharacterized protei 96.4 0.09 2E-06 56.2 15.1 144 59-211 229-398 (561)
357 KOG2395 Protein involved in va 96.4 0.12 2.5E-06 55.7 15.7 146 104-255 344-501 (644)
358 PF14763 HPS3_C: Hermansky-Pud 96.4 0.31 6.8E-06 49.0 17.4 112 675-788 217-348 (353)
359 KOG3617 WD40 and TPR repeat-co 96.3 0.053 1.1E-06 61.1 13.0 66 58-123 65-131 (1416)
360 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.39 8.4E-06 47.2 17.0 81 63-144 62-146 (354)
361 KOG1275 PAB-dependent poly(A) 96.2 0.09 1.9E-06 60.0 14.4 174 63-252 146-340 (1118)
362 KOG0882 Cyclophilin-related pe 96.2 0.16 3.5E-06 53.4 15.0 192 59-257 60-308 (558)
363 TIGR02917 PEP_TPR_lipo putativ 96.1 4.4 9.6E-05 49.6 30.5 25 543-567 466-490 (899)
364 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.39 8.5E-06 41.2 14.3 94 65-163 16-109 (111)
365 PF06977 SdiA-regulated: SdiA- 96.0 1.6 3.6E-05 44.0 21.3 187 59-251 28-247 (248)
366 KOG3621 WD40 repeat-containing 95.9 0.039 8.4E-07 61.3 9.7 113 92-209 32-155 (726)
367 PRK11138 outer membrane biogen 95.9 0.49 1.1E-05 52.0 18.6 186 63-257 68-277 (394)
368 PF14783 BBS2_Mid: Ciliary BBS 95.7 0.43 9.3E-06 40.9 13.2 97 96-203 2-109 (111)
369 KOG3616 Selective LIM binding 95.5 0.98 2.1E-05 50.6 18.2 292 427-744 648-990 (1636)
370 COG5354 Uncharacterized protei 95.5 0.69 1.5E-05 49.7 16.5 124 77-207 15-159 (561)
371 KOG1008 Uncharacterized conser 95.3 0.0049 1.1E-07 67.1 0.3 144 60-208 110-275 (783)
372 PF02897 Peptidase_S9_N: Proly 95.3 3 6.4E-05 46.2 22.4 203 95-337 125-362 (414)
373 PF08596 Lgl_C: Lethal giant l 95.2 0.67 1.4E-05 50.5 15.9 190 59-255 8-291 (395)
374 COG0823 TolB Periplasmic compo 95.1 0.89 1.9E-05 50.0 16.8 136 74-213 173-319 (425)
375 PRK13616 lipoprotein LpqB; Pro 95.0 0.6 1.3E-05 53.7 15.9 124 58-190 402-549 (591)
376 PF03178 CPSF_A: CPSF A subuni 94.9 5.8 0.00013 42.1 22.5 171 74-256 2-204 (321)
377 KOG2034 Vacuolar sorting prote 94.9 0.38 8.2E-06 55.4 13.5 105 665-770 491-597 (911)
378 KOG4649 PQQ (pyrrolo-quinoline 94.9 4.3 9.4E-05 40.1 19.9 98 64-168 23-123 (354)
379 PF07035 Mic1: Colon cancer-as 94.9 0.89 1.9E-05 42.5 13.8 96 634-730 13-115 (167)
380 PF00930 DPPIV_N: Dipeptidyl p 94.9 6.7 0.00015 42.3 23.1 91 61-157 1-119 (353)
381 COG0823 TolB Periplasmic compo 94.9 0.35 7.5E-06 53.2 13.0 147 59-212 199-362 (425)
382 PF15492 Nbas_N: Neuroblastoma 94.9 0.68 1.5E-05 46.3 13.6 135 98-243 2-165 (282)
383 KOG2076 RNA polymerase III tra 94.8 7.6 0.00017 45.3 23.3 40 433-472 145-187 (895)
384 PRK10049 pgaA outer membrane p 94.8 13 0.00027 45.0 28.6 155 394-568 16-176 (765)
385 PF12894 Apc4_WD40: Anaphase-p 94.7 0.098 2.1E-06 37.4 5.4 34 93-126 11-44 (47)
386 COG3490 Uncharacterized protei 94.6 2.1 4.6E-05 42.9 15.9 181 59-254 120-348 (366)
387 PF14761 HPS3_N: Hermansky-Pud 94.6 1.9 4.2E-05 41.8 15.4 143 59-208 22-214 (215)
388 PHA02713 hypothetical protein; 94.6 1.1 2.4E-05 51.5 16.7 188 60-259 300-538 (557)
389 PRK11788 tetratricopeptide rep 94.5 7.5 0.00016 42.4 22.8 158 541-715 140-307 (389)
390 PRK11447 cellulose synthase su 94.5 5.4 0.00012 50.7 23.9 55 401-456 359-414 (1157)
391 smart00320 WD40 WD40 repeats. 94.3 0.12 2.6E-06 33.8 5.2 33 129-166 7-40 (40)
392 PF15390 DUF4613: Domain of un 94.0 3.7 8E-05 45.5 17.7 113 91-208 54-186 (671)
393 PF12569 NARP1: NMDA receptor- 93.9 14 0.00031 41.8 24.3 66 399-464 10-75 (517)
394 TIGR00990 3a0801s09 mitochondr 93.8 17 0.00037 42.6 26.4 27 542-568 331-357 (615)
395 PF08596 Lgl_C: Lethal giant l 93.6 1.8 3.8E-05 47.2 14.9 151 95-255 3-174 (395)
396 COG5167 VID27 Protein involved 93.5 3.7 8.1E-05 44.4 16.3 134 70-208 486-632 (776)
397 PRK11447 cellulose synthase su 93.4 30 0.00065 44.1 34.6 184 526-712 287-483 (1157)
398 PRK02888 nitrous-oxide reducta 93.3 3.5 7.6E-05 46.8 16.6 89 115-209 296-405 (635)
399 PF12894 Apc4_WD40: Anaphase-p 93.2 0.24 5.1E-06 35.4 4.9 30 135-169 13-42 (47)
400 PF00780 CNH: CNH domain; Int 93.1 4.5 9.8E-05 41.8 17.0 142 102-258 4-169 (275)
401 PF14870 PSII_BNR: Photosynthe 93.1 13 0.00027 38.9 21.5 152 90-251 141-301 (302)
402 KOG2444 WD40 repeat protein [G 93.1 0.2 4.3E-06 48.4 5.8 105 108-220 33-144 (238)
403 KOG2280 Vacuolar assembly/sort 93.1 20 0.00044 41.1 39.6 68 59-127 39-116 (829)
404 KOG2376 Signal recognition par 93.0 18 0.00039 40.4 24.4 127 428-568 111-250 (652)
405 PF03178 CPSF_A: CPSF A subuni 92.8 1.4 3E-05 46.9 12.7 107 54-168 88-202 (321)
406 PF10395 Utp8: Utp8 family; I 92.8 22 0.00047 40.9 22.0 163 93-257 129-308 (670)
407 PF15390 DUF4613: Domain of un 92.4 5.2 0.00011 44.4 16.0 179 95-299 21-220 (671)
408 KOG4441 Proteins containing BT 92.3 4.9 0.00011 46.3 16.9 210 63-300 284-530 (571)
409 PRK13616 lipoprotein LpqB; Pro 92.2 6 0.00013 45.6 17.3 154 94-257 350-528 (591)
410 PF06977 SdiA-regulated: SdiA- 92.0 15 0.00033 37.1 19.8 160 88-252 16-199 (248)
411 KOG4441 Proteins containing BT 91.9 6.1 0.00013 45.5 16.9 185 59-257 328-549 (571)
412 PF12234 Rav1p_C: RAVE protein 91.8 2.3 5E-05 48.6 13.0 98 62-167 39-155 (631)
413 TIGR00990 3a0801s09 mitochondr 91.7 20 0.00043 42.1 21.7 57 401-459 135-192 (615)
414 PF12234 Rav1p_C: RAVE protein 91.7 5.1 0.00011 45.9 15.6 110 95-207 31-155 (631)
415 PF13525 YfiO: Outer membrane 91.6 3.4 7.4E-05 40.6 12.8 136 400-566 12-165 (203)
416 PF04841 Vps16_N: Vps16, N-ter 91.5 14 0.00031 40.6 18.9 31 55-85 81-112 (410)
417 PRK10866 outer membrane biogen 91.4 12 0.00026 37.8 16.9 152 399-566 38-199 (243)
418 PHA02790 Kelch-like protein; P 91.1 9.5 0.00021 43.1 17.5 180 62-257 270-473 (480)
419 PHA03098 kelch-like protein; P 91.0 13 0.00027 42.9 18.7 184 59-257 290-514 (534)
420 PHA02713 hypothetical protein; 90.9 14 0.00031 42.6 18.8 171 104-301 303-521 (557)
421 PF14559 TPR_19: Tetratricopep 90.5 0.34 7.4E-06 37.7 3.7 57 403-459 1-57 (68)
422 COG5167 VID27 Protein involved 90.3 5.2 0.00011 43.4 13.0 145 103-255 477-633 (776)
423 PF14781 BBS2_N: Ciliary BBSom 90.2 13 0.00028 33.2 13.8 111 99-212 4-129 (136)
424 KOG2444 WD40 repeat protein [G 90.2 0.93 2E-05 44.0 6.9 93 63-166 69-164 (238)
425 KOG3630 Nuclear pore complex, 90.2 22 0.00047 42.8 18.8 90 95-191 157-253 (1405)
426 PF07569 Hira: TUP1-like enhan 90.1 2.6 5.7E-05 41.8 10.4 73 50-123 8-95 (219)
427 TIGR00540 hemY_coli hemY prote 90.0 12 0.00026 41.4 16.8 73 636-715 320-395 (409)
428 PRK10049 pgaA outer membrane p 89.7 55 0.0012 39.6 23.5 74 631-713 375-450 (765)
429 PF04097 Nic96: Nup93/Nic96; 89.5 13 0.00029 43.3 17.1 38 680-717 417-454 (613)
430 PRK10747 putative protoheme IX 89.3 38 0.00083 37.2 23.7 170 535-715 180-386 (398)
431 PRK02888 nitrous-oxide reducta 89.2 4.1 8.8E-05 46.3 11.9 99 63-168 287-404 (635)
432 KOG1916 Nuclear protein, conta 89.1 0.48 1E-05 54.3 4.7 135 74-213 153-328 (1283)
433 PF14870 PSII_BNR: Photosynthe 89.0 14 0.00031 38.5 15.2 136 61-205 153-301 (302)
434 PRK15174 Vi polysaccharide exp 88.6 59 0.0013 38.4 24.5 63 393-459 42-108 (656)
435 KOG4460 Nuclear pore complex, 88.3 8.5 0.00018 42.0 12.9 47 95-141 105-153 (741)
436 COG3386 Gluconolactonase [Carb 88.3 10 0.00022 39.7 13.8 111 74-191 143-264 (307)
437 PF13432 TPR_16: Tetratricopep 88.0 1.4 3E-05 33.8 5.5 58 400-457 4-61 (65)
438 TIGR00540 hemY_coli hemY prote 87.9 5.3 0.00012 44.1 12.2 163 400-566 160-359 (409)
439 KOG2002 TPR-containing nuclear 87.9 67 0.0015 38.3 23.8 152 545-719 310-481 (1018)
440 PRK14720 transcript cleavage f 87.7 73 0.0016 38.6 23.7 58 633-691 241-304 (906)
441 COG2956 Predicted N-acetylgluc 87.7 27 0.00059 36.1 15.4 219 391-646 64-313 (389)
442 PF12816 Vps8: Golgi CORVET co 87.4 0.27 5.9E-06 47.7 1.4 84 474-566 5-90 (196)
443 PF08728 CRT10: CRT10; InterP 87.2 31 0.00068 40.2 17.5 145 57-208 43-246 (717)
444 KOG1916 Nuclear protein, conta 86.8 0.19 4.1E-06 57.4 -0.2 149 60-208 191-374 (1283)
445 PRK09782 bacteriophage N4 rece 86.6 93 0.002 38.6 33.7 162 399-568 319-502 (987)
446 COG3071 HemY Uncharacterized e 86.6 7.9 0.00017 40.9 11.4 167 399-567 159-353 (400)
447 PF10168 Nup88: Nuclear pore c 86.6 50 0.0011 39.1 19.3 66 59-124 91-180 (717)
448 KOG4499 Ca2+-binding protein R 86.6 35 0.00075 33.6 16.5 132 94-235 109-262 (310)
449 PRK13684 Ycf48-like protein; P 86.5 49 0.0011 35.3 20.6 147 93-252 172-329 (334)
450 COG4105 ComL DNA uptake lipopr 86.2 33 0.00072 34.4 15.0 146 398-567 39-192 (254)
451 PF10647 Gmad1: Lipoprotein Lp 85.9 42 0.00091 34.2 16.5 133 58-197 29-183 (253)
452 KOG2003 TPR repeat-containing 85.5 5.8 0.00013 42.2 9.8 149 550-716 532-686 (840)
453 KOG2247 WD40 repeat-containing 85.5 0.12 2.6E-06 55.1 -2.3 141 58-205 40-185 (615)
454 cd00216 PQQ_DH Dehydrogenases 85.2 60 0.0013 36.8 18.9 65 63-128 60-133 (488)
455 PF02897 Peptidase_S9_N: Proly 85.0 66 0.0014 35.4 28.0 147 58-211 129-312 (414)
456 KOG3630 Nuclear pore complex, 85.0 9.5 0.00021 45.6 12.0 140 95-242 102-259 (1405)
457 PF05096 Glu_cyclase_2: Glutam 83.6 47 0.001 33.7 14.9 154 95-257 46-206 (264)
458 PF10313 DUF2415: Uncharacteri 83.6 3.2 6.8E-05 28.9 4.6 31 94-124 1-34 (43)
459 KOG2377 Uncharacterized conser 82.8 76 0.0016 34.4 30.7 183 63-257 32-233 (657)
460 KOG1898 Splicing factor 3b, su 82.4 64 0.0014 38.8 17.2 133 114-257 911-1051(1205)
461 PRK10747 putative protoheme IX 82.4 19 0.00042 39.5 13.1 44 525-568 311-354 (398)
462 PF13429 TPR_15: Tetratricopep 82.1 16 0.00034 37.9 11.9 56 401-456 16-73 (280)
463 PLN00033 photosystem II stabil 82.1 67 0.0015 35.1 16.8 103 93-205 280-396 (398)
464 PF09026 CENP-B_dimeris: Centr 81.4 0.41 8.8E-06 39.0 -0.3 16 28-43 33-48 (101)
465 PF12816 Vps8: Golgi CORVET co 80.7 3.5 7.6E-05 40.1 5.7 71 647-717 19-93 (196)
466 PF12341 DUF3639: Protein of u 80.4 4.4 9.6E-05 25.0 3.9 26 55-80 2-27 (27)
467 COG3204 Uncharacterized protei 80.4 71 0.0015 32.8 14.6 163 89-256 81-265 (316)
468 COG3391 Uncharacterized conser 80.2 95 0.0021 33.8 19.1 155 58-219 121-294 (381)
469 COG3386 Gluconolactonase [Carb 79.9 84 0.0018 33.0 21.7 130 94-235 111-263 (307)
470 PRK11788 tetratricopeptide rep 79.7 96 0.0021 33.6 19.7 58 398-455 74-135 (389)
471 PF13371 TPR_9: Tetratricopept 79.6 3.5 7.5E-05 32.4 4.6 57 401-458 3-60 (73)
472 PRK11189 lipoprotein NlpI; Pro 78.8 8.6 0.00019 40.3 8.5 25 544-568 238-262 (296)
473 PF07569 Hira: TUP1-like enhan 78.7 10 0.00022 37.7 8.5 27 101-127 18-44 (219)
474 COG5290 IkappaB kinase complex 78.7 7 0.00015 44.7 7.8 124 37-166 186-322 (1243)
475 PF14655 RAB3GAP2_N: Rab3 GTPa 78.4 1.1E+02 0.0024 33.6 20.3 187 62-257 77-401 (415)
476 PRK09782 bacteriophage N4 rece 78.3 96 0.0021 38.4 18.2 74 631-715 198-272 (987)
477 COG3490 Uncharacterized protei 77.3 25 0.00054 35.6 10.3 54 100-158 120-181 (366)
478 PF14727 PHTB1_N: PTHB1 N-term 76.9 1.2E+02 0.0027 33.3 18.7 144 64-208 37-204 (418)
479 PF14583 Pectate_lyase22: Olig 76.7 59 0.0013 35.0 13.7 85 58-142 41-131 (386)
480 KOG1840 Kinesin light chain [C 76.3 1.4E+02 0.003 33.8 17.1 28 539-566 280-307 (508)
481 KOG2005 26S proteasome regulat 75.9 15 0.00032 41.5 9.2 129 579-715 174-311 (878)
482 COG5110 RPN1 26S proteasome re 75.7 22 0.00047 39.2 10.2 106 582-735 179-285 (881)
483 PF07575 Nucleopor_Nup85: Nup8 75.5 72 0.0016 36.9 15.5 62 665-733 390-454 (566)
484 PF10313 DUF2415: Uncharacteri 75.5 9.5 0.00021 26.6 4.9 28 182-209 1-34 (43)
485 PHA03098 kelch-like protein; P 75.1 56 0.0012 37.5 14.6 147 59-213 338-516 (534)
486 cd00216 PQQ_DH Dehydrogenases 75.0 1.5E+02 0.0033 33.5 20.4 67 62-128 226-324 (488)
487 PF05694 SBP56: 56kDa selenium 74.5 1.1E+02 0.0024 33.5 14.9 148 60-209 137-343 (461)
488 PF13429 TPR_15: Tetratricopep 74.4 17 0.00036 37.7 9.3 25 544-568 216-240 (280)
489 PHA02790 Kelch-like protein; P 74.3 74 0.0016 36.0 15.0 168 104-300 271-454 (480)
490 TIGR02521 type_IV_pilW type IV 74.3 55 0.0012 31.8 12.8 55 401-455 39-93 (234)
491 KOG1897 Damage-specific DNA bi 73.7 2.1E+02 0.0046 34.5 20.9 186 60-255 495-702 (1096)
492 PF08728 CRT10: CRT10; InterP 72.9 34 0.00073 39.9 11.6 106 63-169 113-247 (717)
493 KOG1840 Kinesin light chain [C 72.7 43 0.00092 37.7 12.1 55 400-454 206-268 (508)
494 PF10168 Nup88: Nuclear pore c 72.5 2.1E+02 0.0046 34.0 30.4 73 94-168 85-179 (717)
495 TIGR02171 Fb_sc_TIGR02171 Fibr 72.4 22 0.00048 42.2 10.0 79 66-144 320-409 (912)
496 PF09976 TPR_21: Tetratricopep 71.7 73 0.0016 29.0 11.9 119 403-567 21-143 (145)
497 PRK13684 Ycf48-like protein; P 71.4 1.4E+02 0.0031 31.8 15.5 135 62-206 182-329 (334)
498 KOG1900 Nuclear pore complex, 71.3 51 0.0011 40.6 12.8 131 71-209 96-273 (1311)
499 PF00930 DPPIV_N: Dipeptidyl p 70.8 12 0.00026 40.4 7.3 60 102-167 1-70 (353)
500 COG3391 Uncharacterized conser 70.4 1.7E+02 0.0036 31.9 21.8 153 96-257 76-242 (381)
No 1
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-118 Score=950.94 Aligned_cols=740 Identities=52% Similarity=0.905 Sum_probs=693.9
Q ss_pred cCCCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC
Q 003625 34 EEEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (807)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (807)
+++|.++|.|+++.+..++.++.++|+..++++++.|+.+|.|++++.+|.. .+...|+.. +.+|.+++|||.
T Consensus 19 deePklkY~Ri~n~~~~~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~ 91 (846)
T KOG2066|consen 19 DEEPKLKYERISNLVKNFLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSD 91 (846)
T ss_pred ccCccceehhhhcccHHHHhhhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecC
Confidence 7899999999999999999999999999999999999999999999999987 555566654 778999999999
Q ss_pred CCcEEEEeccCC-ceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceE-eecCCcCeEEEEEeC
Q 003625 114 DGSVVINSLFTD-EKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWRT 191 (807)
Q Consensus 114 Dg~v~iwd~~~~-~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-~~~~~~~V~~l~~~~ 191 (807)
||+|.|..+.+. .+.++++++|+.+|+++|+|.++.++.|++||..| +.++.++|.+.+..+ ++..+|+|.++.|.|
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g 170 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG 170 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC
Confidence 999999999885 45678999999999999999988899999999999 999999999977666 788999999999999
Q ss_pred CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCCCcCCCCccccCCcc
Q 003625 192 SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMN 271 (807)
Q Consensus 192 ~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 271 (807)
+++||++|-+|++||+.+++.+..++.+...++++.++|.+.|.+...|++||+++|+|..++.+.+.. ..+..-.+..
T Consensus 171 ~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~~s~~-a~~~~~~~~~ 249 (846)
T KOG2066|consen 171 NLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKRSSSE-ARSFRLPSLK 249 (846)
T ss_pred cEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecccccc-cccccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999554222 2223333455
Q ss_pred eEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCccccCcccccc
Q 003625 272 QVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYK 351 (807)
Q Consensus 272 ~v~~~~~~~~~~~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~~i~~~~~~~~~~~~~~ 351 (807)
.++++..|+.++.|+|++|+++++++|+|.+..+ +...++..|..+++..+|++|+++..++|+++|++.++||+++.
T Consensus 250 ~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~--~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~Dal~~~~~e~~~ 327 (846)
T KOG2066|consen 250 KVEIVSHFETSFYISGLAPLGDQLVVLGFDKDIS--EGEFTSARPSSRAKGNRPEIRIVSLNNDEICSDALIVRGFEELS 327 (846)
T ss_pred eeeeEEEeeeeeeeeccccccceeEEEeeecccc--cccccccchhhhccCCCceEEeccccchhhhhhhhhhcchhhcC
Confidence 8999999999999999999999999999986543 44566778876688889999999999999999999999999999
Q ss_pred ccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEEeCChhhHHHHHHhcccHHHHHHHHHhcCCCc--hhHhHH
Q 003625 352 AKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRS--ELLDEV 429 (807)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~--~~~~~i 429 (807)
++||||...| +..+.|||+||++|+++++++.+|||+||+++++|+|||.+++...... .+...+
T Consensus 328 ~~DY~L~~~~-------------~~~~~yyIvspkDiV~a~~~~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv 394 (846)
T KOG2066|consen 328 INDYHLGGHP-------------KTEPLYYIVSPKDIVVAKERDQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKV 394 (846)
T ss_pred CccccccCCC-------------CCCceEEEecCCceEEEeecCcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHH
Confidence 9999999975 4688999999999999999999999999999999999999999876633 357899
Q ss_pred HHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHH
Q 003625 430 GSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKY 509 (807)
Q Consensus 430 ~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~ 509 (807)
|+.|++||+..++|++||..|++++|++..+||.|+++|...+++..+.||+|+..|+|.+.+|+++|..|+. ++...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~--~~~~~ 472 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA--SDVKG 472 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 48999
Q ss_pred HHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhccchHHHHHH
Q 003625 510 LLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREK 589 (807)
Q Consensus 510 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~~~~~~~~~ 589 (807)
|.+.++.||..+|++.+++++++.+....+++..+.+.|+.||...++|.+|+++|+++++.++|++|.++++++.+.+.
T Consensus 473 F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~ 552 (846)
T KOG2066|consen 473 FLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQ 552 (846)
T ss_pred HHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChhHHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHH
Q 003625 590 VVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLL 669 (807)
Q Consensus 590 ~~~l~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~ 669 (807)
+..||.++.++++.+|+++.+.+||..|+++++. .|.+++.||..++..+.....+||+.+++|||+|++++|+
T Consensus 553 Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~------~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LL 626 (846)
T KOG2066|consen 553 IVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLED------NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLL 626 (846)
T ss_pred HHHHHccchhhHHHHHhhccccCCHHHHHHHHhc------ChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhh
Confidence 9999999999999999999999999999999994 6889999999999999988999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHHhcCCchH
Q 003625 670 PFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQCLNKPEM 749 (807)
Q Consensus 670 ~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~~~~~~~~ 749 (807)
.||+++++|++++|+++|.+.++++|.||||||||++.+||.++|++++|+++||+||++++|++||..|+.|++++|++
T Consensus 627 PFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 627 PFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q 003625 750 VGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKV 806 (807)
Q Consensus 750 ~~~lL~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 806 (807)
++++|+ ++++.||..|+..||+++.|+.+++.|.++|++|+.|++++++|..|+++
T Consensus 707 ~~~ll~-i~~~~dpl~ii~kip~g~~IPnLrdsl~Kil~dy~~q~el~~~c~~i~~n 762 (846)
T KOG2066|consen 707 IKALLN-IGEHEDPLLIIRKIPDGLEIPNLRDSLVKILQDYNLQLELRQGCYDILKN 762 (846)
T ss_pred HHHHHH-hhhcccHHHHHhcCCCCCCCccHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999988 77779999999999999999999999999999999999999999999875
No 2
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-47 Score=410.96 Aligned_cols=669 Identities=14% Similarity=0.167 Sum_probs=484.5
Q ss_pred ceEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcc-eeEEEEcCCCCEEEEEeCCCc-----EEEEeccCC----
Q 003625 56 AASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAA-VNDLSFDVDGEYVGSCSDDGS-----VVINSLFTD---- 125 (807)
Q Consensus 56 ~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~-V~~l~~s~~g~~l~s~~~Dg~-----v~iwd~~~~---- 125 (807)
.++||++++..+|+|+.+|.|.+++.....++.++++... |..+....+..+|++.+.|+. ++||++...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 6899999999999999999999999877777889888877 665644444478888887764 899998752
Q ss_pred --cee---EE---ecC--C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC---CccceEeecCCcCeEEEEEe-
Q 003625 126 --EKM---KF---DYH--R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL---GYRDQVLHSGEGPVHVVKWR- 190 (807)
Q Consensus 126 --~~~---~~---~~~--~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---~~~~~~~~~~~~~V~~l~~~- 190 (807)
.+. .+ ..+ . |+.+++.+.+ -+.+|+|-.+|.|.++..... +.+....+...++|+++.+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-----l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSED-----LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEcc-----ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 122 11 222 3 8899999988 689999999999999865433 24444555678899999998
Q ss_pred -CCE-EEEEeCCcEEEEEcCCCceEE-eeeCCCCCCCCCCCCCeeeeeCCCE-EEEEeCCcEEEEEEeeCCCcCCCC-cc
Q 003625 191 -TSL-IAWANDAGVKVYDAANDQRIT-FIERPRGSPRPELLLPHLVWQDDTL-LVIGWGTYIKIASIKTNQSNVANG-TY 265 (807)
Q Consensus 191 -~~~-la~~~d~~v~iwd~~~~~~~~-~i~~~~~~~~~~~~~~~l~~~~~~~-l~~g~d~~i~vw~~~~~~~~~~~~-~~ 265 (807)
|.. +..++...|.+|.+.+..+.. .+..+ +....|.+++++.. +++|.+..+.+|+....+.+.+.+ +.
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~------G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN------GISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccC------CccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCC
Confidence 443 455567789999998554222 23333 22345566666655 899999999999998777554433 22
Q ss_pred ccCCcceEEEEEEeeeceEEEeeeecC-CceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCcccc
Q 003625 266 RHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPV 344 (807)
Q Consensus 266 ~~~~~~~v~~~~~~~~~~~i~gi~~~~-~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~~i~~~~~~~ 344 (807)
+ --+-|++ +.++++.-....+ .+ +.+.......+.+.|+.+.-+
T Consensus 256 k-------------------k~~~~~~~g~~L~v~~~~~~~-----~~----s~s~ss~~~i~~~~d~~n~~v------- 300 (933)
T KOG2114|consen 256 K-------------------KEMLVFSFGLLLCVTTDKGTE-----NT----SLSNSSSNRIFKAYDLRNRYV------- 300 (933)
T ss_pred e-------------------EEEEEEecCEEEEEEccCCCC-----Cc----ccCccchhheeehhhhcCccc-------
Confidence 1 0123344 3333332211100 00 011122244555556654322
Q ss_pred CccccccccCcccccccCCCCCCCCCcccCCCC-CEEEEECCCcEEEEEeCChhhHHHHHHhcccHHHHHHHHHhcCCCc
Q 003625 345 LGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDE-PLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRS 423 (807)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~v~s~~~i~~~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~ 423 (807)
.|......-+. ....|+ +.+++.+.+.++.+.+++.+.++..|++|+.|.-|+++|+....+.
T Consensus 301 -~ys~vl~~l~d---------------~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~ 364 (933)
T KOG2114|consen 301 -LYSSVLEDLSD---------------NLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDE 364 (933)
T ss_pred -chHHhHHHHHH---------------HHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCH
Confidence 01110000000 112355 6778888888999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCC--CCCCHHHHHHHHHHHh
Q 003625 424 ELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTEN--PRLRDTAYEVALVALA 501 (807)
Q Consensus 424 ~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~--~~l~~~~~~~~L~~~~ 501 (807)
+.+.+|.++|++||+.+|+|++|+.+|.+.++ ..+.++||.+|+++++|.+|+.||...+ ...+..+.+.+|++|.
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999 6888999999999999999999999863 3355667777777887
Q ss_pred cCCCChHHHHHHhhcCCc--CCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccC-c-chhhHh
Q 003625 502 TNPSFHKYLLSTVKSWPP--VIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-P-YIFDFI 577 (807)
Q Consensus 502 ~~~~~~~~~~~~i~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-~-~~~~~i 577 (807)
+.. |.+++.++|+..+. ..||+++++..+.+.. +++.+.+|..+.++|+++|+++++..+ + +|+.||
T Consensus 443 Klk-d~~kL~efI~~~~~g~~~fd~e~al~Ilr~sn--------yl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi 513 (933)
T KOG2114|consen 443 KLK-DVEKLTEFISKCDKGEWFFDVETALEILRKSN--------YLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYI 513 (933)
T ss_pred Hhc-chHHHHHHHhcCCCcceeeeHHHHHHHHHHhC--------hHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHH
Confidence 764 89999999998763 3589999999999887 999999999999999999999998766 4 499999
Q ss_pred hhccc---hHHHHHHHHHHHhcChhHHHHHhhhcC-CCC--ChHHHHHHHh----cccccCchhhHHHHHHHHHHhhCCC
Q 003625 578 ENHNL---HDAIREKVVQLMLLDCKRAVSLLIQNK-DLI--TPSEVVTQLL----NARDKCDSRYFLHLYLHALFEVNPH 647 (807)
Q Consensus 578 ~~~~~---~~~~~~~~~~l~~~~~~~~~~ll~~~~-~~~--~~~~vi~~l~----~~~~~~~~~~~~~~yLe~l~~~~~~ 647 (807)
...++ .....+|.++|++++|++++.+|++.. +.. +...+...+. ..+.-...+..+..||+.+.+..+.
T Consensus 514 ~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~ 593 (933)
T KOG2114|consen 514 SSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPD 593 (933)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCC
Confidence 99984 455679999999999999999999711 111 1111111111 0000112355555666665554442
Q ss_pred CCh--hHHHHHH-------------------------------------------HHHHHhchH----HHHHHhhc----
Q 003625 648 AGK--DFHDMQV-------------------------------------------ELYADYDLK----MLLPFLRS---- 674 (807)
Q Consensus 648 ~~~--~~~~~l~-------------------------------------------~ly~~~~~~----kl~~fL~~---- 674 (807)
... .+..++. .||++.++. +-.-++++
T Consensus 594 s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~~sdpq~kt~~~~~l~~~~~~~~~~~~~~~l~ksn~l~ 673 (933)
T KOG2114|consen 594 SEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGFDSDPQVKTTTLYDLYLELDAEDVPERTIILRKSNKLL 673 (933)
T ss_pred chhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhcccccChhhhhccchhhHHHHHhhhcccccchhhhhcchh
Confidence 222 1111222 222222211 11122222
Q ss_pred ---CCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcC--ChhHHHHHHHHhcCCch-
Q 003625 675 ---SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQH--DDELWEELIKQCLNKPE- 748 (807)
Q Consensus 675 ---~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~--~~~lw~~ll~~~~~~~~- 748 (807)
..+||.+.||-+|+..++.+...|+|+|++...+-+..+.. ..|++.++..|++.+ +++||..+|+|..+...
T Consensus 674 d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~q-~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i 752 (933)
T KOG2114|consen 674 DYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQQ-ISDPETVITLCERLGKEDPSLWLHALKYFVSEESI 752 (933)
T ss_pred hhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHHH-hhChHHHHHHHHHhCccChHHHHHHHHHHhhhcch
Confidence 24689999999999999999999999999999997777776 499999999999987 67999999999987652
Q ss_pred -----HHHHHHHhh--cCCCCHHHHHhhCC--CCCccccHHHHHHHHHhhhhHHHHHHH
Q 003625 749 -----MVGVLLEHT--VGNLDPLYIVNMVP--NGLEIPRLRDRLVKIITDYRTETSLRH 798 (807)
Q Consensus 749 -----~~~~lL~~~--~~~i~~~~vl~~lp--~~~~i~~~~~~l~~~l~~~~~~~~~~~ 798 (807)
.+.++|+.+ +..|+|..||+.|. +.++++.||+||.++|++|+.+|+-.+
T Consensus 753 ~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ltls~IkD~ii~~l~~~~~~I~qd~ 811 (933)
T KOG2114|consen 753 EDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGTLTLSVIKDYIIKWLNKYSTIIEQDE 811 (933)
T ss_pred hhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCceEEehhHHHHHHHHHhhhHHHHhhH
Confidence 678888877 56699999999999 668899999999999999999886544
No 3
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-36 Score=339.50 Aligned_cols=411 Identities=20% Similarity=0.272 Sum_probs=327.8
Q ss_pred CCCEEEEECCCcEEEEEeCC-hhhHHHHHHhcccHHHHHHHHHhcCCC-c---hhHhHHHHHH-HHHHhCcccHHHHHhH
Q 003625 376 DEPLYYIVSPKDVVIAKPRD-AEDHIAWLLEHGWHEKALAAVEAGQGR-S---ELLDEVGSRY-LDHLIVERKYAEAASL 449 (807)
Q Consensus 376 ~~~~~~v~s~~~i~~~~~~~-~~d~i~~ll~~~~~~~Al~~~~~~~~~-~---~~~~~i~~~~-~~~l~~~~~~~~A~~~ 449 (807)
..+++|+.+...++++++.+ +..+++.|++.+.|++|+.+++....+ + .....+...+ +-.+|.+++|++|+++
T Consensus 289 ~~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~ 368 (877)
T KOG2063|consen 289 HNGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSL 368 (877)
T ss_pred CCcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45889999999999999999 999999999999999999999876542 2 2234555666 6779999999999988
Q ss_pred hhHhhccChhhHHHHHHHHhh----cC-------CCC----------------cccccC---------------------
Q 003625 450 CPKLLRGSASAWERWVFHFAH----LR-------QLP----------------VLVPYM--------------------- 481 (807)
Q Consensus 450 ~~~~~~~~~~~we~~i~~F~~----~~-------~l~----------------~L~~yl--------------------- 481 (807)
+.+.-.. .-.++..|-+ .. ..+ .+.+|+
T Consensus 369 F~~~~~d----~~~vi~lfP~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~~~ 444 (877)
T KOG2063|consen 369 FEKSEID----PRHVISLFPDLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYMNY 444 (877)
T ss_pred HHhhccC----hHHHHHhchhhcCCcccccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHHhh
Confidence 6654321 0111111110 00 000 111111
Q ss_pred -----cCCC-----CCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 003625 482 -----PTEN-----PRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAEL 551 (807)
Q Consensus 482 -----~~~~-----~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 551 (807)
++.. ...-..+.+++|++|+..+ +.....+++. +.+.+.++.+...+..+. .++.|..|
T Consensus 445 ~~~~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n--~~~v~~llrl-en~~c~vee~e~~L~k~~--------~y~~Li~L 513 (877)
T KOG2063|consen 445 FKNTLISELLKSDLNDILELIDTTLLKCYLETN--PGLVGPLLRL-ENNHCDVEEIETVLKKSK--------KYRELIEL 513 (877)
T ss_pred hhccCcchhhccchHHHHHHHHHHHHHHHHhcC--chhhhhhhhc-cCCCcchHHHHHHHHhcc--------cHHHHHHH
Confidence 1100 0122366677777777653 3333333333 223566666666666655 89999999
Q ss_pred HHhcCCHHHHHHHHHHccCc-------------chhhHhhhcc--chHHHHHHHHHHHhcChhHHHHHhhh----cCCCC
Q 003625 552 YVIDGHYEKAFSLYADLMKP-------------YIFDFIENHN--LHDAIREKVVQLMLLDCKRAVSLLIQ----NKDLI 612 (807)
Q Consensus 552 y~~~~~~~~al~~~~~~~~~-------------~~~~~i~~~~--~~~~~~~~~~~l~~~~~~~~~~ll~~----~~~~~ 612 (807)
|..+|+|++||++|.++.++ .+++|+++.+ ..+++.++..|++..+|++++++|+. ..+++
T Consensus 514 Y~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~si 593 (877)
T KOG2063|consen 514 YATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESI 593 (877)
T ss_pred HHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccC
Confidence 99999999999999998662 2678888876 45999999999999999999999998 56789
Q ss_pred ChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh-----------------c-hHHHHHHhhc
Q 003625 613 TPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-----------------D-LKMLLPFLRS 674 (807)
Q Consensus 613 ~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~-----------------~-~~kl~~fL~~ 674 (807)
++++|+.++... .+.+++.|||+++.........+|+.|+.+|++. . |+||+.||+.
T Consensus 594 s~~~Vl~~l~~~-----~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~ 668 (877)
T KOG2063|consen 594 SRDDVLNYLKSK-----EPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLES 668 (877)
T ss_pred CHHHHHHHhhhh-----CcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhh
Confidence 999999999873 6899999999999999988999999999999842 2 8999999999
Q ss_pred CCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCC-----hhHHHHHHHHhcCC---
Q 003625 675 SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHD-----DELWEELIKQCLNK--- 746 (807)
Q Consensus 675 ~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~-----~~lw~~ll~~~~~~--- 746 (807)
++.|++...|...+..+|++|++++++|+|+|++||+||++.|+|+++|..||..++. .+.|..+|+.++.+
T Consensus 669 s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d 748 (877)
T KOG2063|consen 669 SDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHD 748 (877)
T ss_pred hcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999999999999999999885 47999999999988
Q ss_pred ----chHHHHHHHhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q 003625 747 ----PEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKV 806 (807)
Q Consensus 747 ----~~~~~~lL~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 806 (807)
|-.+..+|+.+++.+|+..+++++|+++++.++.++|.++|++...+.+-.+..++++++
T Consensus 749 ~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q~ 812 (877)
T KOG2063|consen 749 YKSGPLYILNFLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQA 812 (877)
T ss_pred ccccchhhhhHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 226777888999999999999999999999999999999999998888888888888754
No 4
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.3e-31 Score=287.75 Aligned_cols=410 Identities=19% Similarity=0.221 Sum_probs=327.6
Q ss_pred cccCCCCCEEEEECCCcEEEEEeCChh-hHHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhH
Q 003625 371 QWAAGDEPLYYIVSPKDVVIAKPRDAE-DHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASL 449 (807)
Q Consensus 371 ~~~~~~~~~~~v~s~~~i~~~~~~~~~-d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~ 449 (807)
-+.+...++||+++.+.++....-+.. +.+..++.+|+|+.|+++|... ++.++.|..++++++|..++|..||++
T Consensus 335 lv~D~va~~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~~---p~~le~Vl~~qAdf~f~~k~y~~AA~~ 411 (911)
T KOG2034|consen 335 LVSDSVAETFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIARTR---PDALETVLLKQADFLFQDKEYLRAAEI 411 (911)
T ss_pred eeeccccceEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccCC---HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345567889999999999999777776 6669999999999999998764 467889999999999999999999999
Q ss_pred hhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCH--HHHHHHHHHHhcC-----CCChH-HHHHHhhcCCcCC
Q 003625 450 CPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRD--TAYEVALVALATN-----PSFHK-YLLSTVKSWPPVI 521 (807)
Q Consensus 450 ~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~~l~~--~~~~~~L~~~~~~-----~~~~~-~~~~~i~~~~~~l 521 (807)
++.+...||+|+.||+..++-+.|..||-....++++ .+..+.|..|+.. ..+.. ...+++..|....
T Consensus 412 ----yA~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~ 487 (911)
T KOG2034|consen 412 ----YAETLSSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEY 487 (911)
T ss_pred ----HHHhhhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHH
Confidence 5555789999999999999999999999887666662 2223445444331 11111 1111222221100
Q ss_pred C-----------------ChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcc-hhhHhhhccch
Q 003625 522 Y-----------------SALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHNLH 583 (807)
Q Consensus 522 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~~~ 583 (807)
- +-+++...+. +..-.+.+.++....++|+..+.+|++.+..+ +++.+.++...
T Consensus 488 ~~~~re~~~~~~~~~~~~nretv~~l~~--------~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~~ 559 (911)
T KOG2034|consen 488 DEVQREFSKFLVLHKDELNRETVYQLLA--------SHGRQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRNP 559 (911)
T ss_pred HHHHHHHHHHHHhhHHhhhHHHHHHHHH--------HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 0 0011111111 12245678888888999999999999888754 88888888899
Q ss_pred HHHHHHHHHHHhcChhHHHHHhhhcCCCCChHHHHHHHhcccc--cCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 003625 584 DAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARD--KCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYA 661 (807)
Q Consensus 584 ~~~~~~~~~l~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~--~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~ 661 (807)
+.++++++.|+.+.|.+++..++...+.++|..+.+.|.-... ...-+...++||++.+.+.....+..||.++.||+
T Consensus 560 el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya 639 (911)
T KOG2034|consen 560 ELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYA 639 (911)
T ss_pred hhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhh
Confidence 9999999999999999999999998888888888777653221 11346778899999999999999999999999999
Q ss_pred HhchHHHHHHhhcC------CCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCC---
Q 003625 662 DYDLKMLLPFLRSS------QHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHD--- 732 (807)
Q Consensus 662 ~~~~~kl~~fL~~~------~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~--- 732 (807)
+..|+.++-+|... .+||++.|+++|-+.+..+.+|+|+.+|+.|++|+++.++ .|++.|+..|....+
T Consensus 640 ~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~--~d~dlak~~A~~~ee~e~ 717 (911)
T KOG2034|consen 640 KHERDDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQ--FDIDLAKVIANDPEEDED 717 (911)
T ss_pred cCCccchHHHHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhh--cCHHHHhhhhcChhhHHH
Confidence 99999888777662 4899999999999999999999999999999999999998 479999999988773
Q ss_pred --hhHHHHHHHHhcCCchHHHHHHHhh--cCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHHHHH
Q 003625 733 --DELWEELIKQCLNKPEMVGVLLEHT--VGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLR 797 (807)
Q Consensus 733 --~~lw~~ll~~~~~~~~~~~~lL~~~--~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~~~~ 797 (807)
+.||.++.+|++.....+++.+..+ .+.+...++++.+|++.+|+++|+.+|..|++|+.+++-.
T Consensus 718 lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~~~lLkiedlLpffpdf~~id~~keaic~~L~~~n~rieel 786 (911)
T KOG2034|consen 718 LRKKLWLKIAKHVVKQENDIKKAIRFLKENELLTIEDLLPFFPDFTKIDNLKEAICDFLEDYNKRIEEL 786 (911)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCcccchhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3799999999998888777777666 4447888999999999999999999999999999988543
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.5e-25 Score=218.11 Aligned_cols=162 Identities=20% Similarity=0.262 Sum_probs=141.2
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee--EEe
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM--KFD 131 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~--~~~ 131 (807)
|.| |+|+|..||+|+.|.++++||+. ..+..+.++|..-|.|++|+|||+.||||+.||.|++||..++... .+.
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence 544 88899999999999999999995 4457889999999999999999999999999999999999886654 689
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC-CEEEEE-eCCcEEEEEcC
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~-~~la~~-~d~~v~iwd~~ 208 (807)
+|+ .|++++|.|--.....+.+++++.||.+++|+.. .+.....+.+|..+|+|++|-| .++.++ .|++|++|+..
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc
Confidence 999 9999999985444457899999999999999986 5678889999999999999994 677777 69999999998
Q ss_pred CCceEEeeeCC
Q 003625 209 NDQRITFIERP 219 (807)
Q Consensus 209 ~~~~~~~i~~~ 219 (807)
.|.+...+..|
T Consensus 277 dG~~~r~lkGH 287 (480)
T KOG0271|consen 277 DGKLCRELKGH 287 (480)
T ss_pred chhHHHhhccc
Confidence 87766665554
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.93 E-value=1e-24 Score=234.67 Aligned_cols=198 Identities=17% Similarity=0.250 Sum_probs=176.1
Q ss_pred eeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 003625 41 YQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI 119 (807)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (807)
+.+|.+++-.. .|+|+.++|++++.|++|++|.+.. ..+..+++|..+|+++.|+|-|-++||||.|++.++
T Consensus 447 L~GH~GPVyg~-------sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 447 LYGHSGPVYGC-------SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred eecCCCceeee-------eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 66777777655 7999999999999999999999964 446788999999999999999999999999999999
Q ss_pred EeccCCce-eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEE
Q 003625 120 NSLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA 195 (807)
Q Consensus 120 wd~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la 195 (807)
|....... ..+.+|- .|.|++|||+ +.++++|+.|.+|++||.. .|...+++.+|.++|++++|+ |++++
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPN-----s~Y~aTGSsD~tVRlWDv~-~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPN-----SNYVATGSSDRTVRLWDVS-TGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eecccCCchhhhcccccccceEEECCc-----ccccccCCCCceEEEEEcC-CCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99988554 4577777 9999999999 8999999999999999987 788999999999999999999 89999
Q ss_pred EE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 196 WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 196 ~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
++ .|+.|.+||+.++..+..+..|. ..+++++|+ +|..|++| .|++|++||+....
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~~l~~Ht------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVKQLKGHT------GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ecccCCcEEEEEcCCCcchhhhhccc------CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99 69999999999999888765553 358899997 88899998 89999999987643
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.92 E-value=3.5e-23 Score=209.53 Aligned_cols=218 Identities=19% Similarity=0.235 Sum_probs=182.1
Q ss_pred CceEE--EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc------
Q 003625 55 DAASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------ 126 (807)
Q Consensus 55 ~~i~~--~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------ 126 (807)
..+++ |+.+|+.||+|+.+|.++||+.+|..+.++..|+++|.++.|+.+|++|++++.||++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 33666 4556999999999999999999999999999999999999999999999999999999999975432
Q ss_pred ------------------------------------eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 127 ------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 127 ------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
+.++.+|. +|.++.|+|. +.++++++.|+++++|...
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-----g~LLaS~SdD~TlkiWs~~- 389 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-----GSLLASCSDDGTLKIWSMG- 389 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-----CceEEEecCCCeeEeeecC-
Confidence 23455677 9999999999 8999999999999999865
Q ss_pred CCccceEeecCCcCeEEEEEeC-----------CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-C
Q 003625 170 LGYRDQVLHSGEGPVHVVKWRT-----------SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-D 236 (807)
Q Consensus 170 ~~~~~~~~~~~~~~V~~l~~~~-----------~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~ 236 (807)
.......++.|...|..+.|+| ..++++ .|++|++||+..+.++..+..|. ..+.+++|+ +
T Consensus 390 ~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~------~pVysvafS~~ 463 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ------EPVYSVAFSPN 463 (524)
T ss_pred CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC------CceEEEEecCC
Confidence 4566777888998899999982 455555 79999999999999999865554 458899996 8
Q ss_pred CCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecC-CceEEEEee
Q 003625 237 DTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFG-DCLVVLAYI 301 (807)
Q Consensus 237 ~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~-~~l~vl~~~ 301 (807)
++++++| .||.|.+|+++++. +++.+..++.|.-+.|-. +..+..++.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~-----------------l~~s~~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGK-----------------LVKSYQGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred CcEEEecCCCCeeEeccccchh-----------------eeEeecCCCeEEEEEEcCCCCEEEEEec
Confidence 8999999 99999999998876 556667777778888876 555555543
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=214.16 Aligned_cols=189 Identities=20% Similarity=0.242 Sum_probs=168.0
Q ss_pred EEEec--CCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC
Q 003625 59 CVAVA--ERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR 134 (807)
Q Consensus 59 ~~s~~--~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~ 134 (807)
.|+|. +..+|+|+.||++++|+.++ .++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++. .....+|.
T Consensus 224 ~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 224 VFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred EEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc
Confidence 47885 66899999999999999976 6688999999999999999999999999999999999999954 45678888
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCC
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~ 210 (807)
+|.+++|+|+ |..+++||.|..-++||.+ .+.++..+.+|..+|.++.|+ |..+|+| +|++++|||++..
T Consensus 304 ~~v~~iaf~~D-----GSL~~tGGlD~~~RvWDlR-tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 304 KGVFSIAFQPD-----GSLAATGGLDSLGRVWDLR-TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cccceeEecCC-----CceeeccCccchhheeecc-cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 9999999999 9999999999999999998 789999999999999999999 7788888 7999999999999
Q ss_pred ceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 211 QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
..+.+++.|. ..+..+.++ .|.+|+++ .|+++++|...+.+..
T Consensus 378 ~~ly~ipAH~------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 378 SELYTIPAHS------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ccceeccccc------chhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 8888866654 457778886 57888888 9999999988776643
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=215.06 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=161.5
Q ss_pred EEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR- 134 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~- 134 (807)
.+|+|+|++|++++.|.+-++||+. +..+....+|+..|.+++|.|||..++|||.|..-+|||++++++. .+.+|.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 3799999999999999999999995 4445566799999999999999999999999999999999998765 678888
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEcCCC
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~~~~ 210 (807)
+|.+|+|+|+ |..++||+.|+++++||.+ ......++..|..-|+.|+|+ |.+++++ .|++++||...+.
T Consensus 347 ~I~~V~fsPN-----Gy~lATgs~Dnt~kVWDLR-~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 347 EILSVAFSPN-----GYHLATGSSDNTCKVWDLR-MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred ceeeEeECCC-----ceEEeecCCCCcEEEeeec-ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 9999999999 9999999999999999987 456678889999999999999 7899888 6999999999999
Q ss_pred ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEE
Q 003625 211 QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIAS 252 (807)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~ 252 (807)
++++.+..|. .-+.++..+ +++.++++ +|.++++|.
T Consensus 421 ~~~ksLaGHe------~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 421 SPLKSLAGHE------GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccchhhcCCc------cceEEEEeccCCceEEEeccCceeeecc
Confidence 9998866554 346666664 77777777 999999995
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=206.95 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=153.2
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCe-eEEecCCCcceeEEEEcC-----CCCEEEEEeCCCcEEEEeccCCcee-EE
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQ-VKEFPAHTAAVNDLSFDV-----DGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~-~~~~~~h~~~V~~l~~s~-----~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (807)
+|+|+|+.||+|+.||+|++||. .|.. ...+.+|+..|++++|.| .++++++++.||.|+|||+..+.+. .+
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l 243 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL 243 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence 58999999999999999999998 3444 578899999999999975 6779999999999999999887665 57
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE-------------------------------------------
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS------------------------------------------- 166 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~------------------------------------------- 166 (807)
.+|. +|+|+.|--+ .++.+|+.|++|++|+
T Consensus 244 sgHT~~VTCvrwGG~------gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~ 317 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGE------GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF 317 (480)
T ss_pred ccCccceEEEEEcCC------ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence 8888 9999998654 5778888888888884
Q ss_pred -----------------------------------cccCCccceEeecCCcCeEEEEEe--CCEEEEEe-CCcEEEEEcC
Q 003625 167 -----------------------------------KKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVYDAA 208 (807)
Q Consensus 167 -----------------------------------~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~-d~~v~iwd~~ 208 (807)
..-..+++..+.+|..-|+.+.|+ ++++|+++ |.+|++|+-+
T Consensus 318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence 111112333456788889999999 68999985 9999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+|+.+..+..| ...+..++|+ +.+++++| .|.++++|++++.+
T Consensus 398 tGk~lasfRGH------v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 398 TGKFLASFRGH------VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred Ccchhhhhhhc------cceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 99998886554 3458899997 66777777 89999999999876
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-22 Score=187.42 Aligned_cols=226 Identities=18% Similarity=0.231 Sum_probs=177.2
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecC------CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EE
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFL------GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (807)
+..+ +.+.+.+++.|.++.+|+++ |..++.+.+|+..|+.+..+++|++.+|++.||++++||+.+++.. .+
T Consensus 22 a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f 101 (315)
T KOG0279|consen 22 AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF 101 (315)
T ss_pred EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE
Confidence 4444 46789999999999999983 4557899999999999999999999999999999999999997654 68
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC--CcCeEEEEEeCC----EEEEE-eCCcE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWRTS----LIAWA-NDAGV 202 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~--~~~V~~l~~~~~----~la~~-~d~~v 202 (807)
.+|. .|.+++|+|+ ++.+++|+.|.++.+|+.. +.....+..+ .+.|+|++|+|+ +++++ .|++|
T Consensus 102 ~GH~~dVlsva~s~d-----n~qivSGSrDkTiklwnt~--g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTD-----NRQIVSGSRDKTIKLWNTL--GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred EecCCceEEEEecCC-----CceeecCCCcceeeeeeec--ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 8998 9999999999 8999999999999999874 4444444443 789999999942 45544 79999
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEee
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQ 280 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 280 (807)
++||+++-+....+.. |..+++.++.+ ||..+++| .||.+.+||++.+... ..+.
T Consensus 175 KvWnl~~~~l~~~~~g------h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l-----------------ysl~ 231 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIG------HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL-----------------YSLE 231 (315)
T ss_pred EEEccCCcchhhcccc------ccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee-----------------Eecc
Confidence 9999998877666433 44567788886 88888888 8999999999987622 1222
Q ss_pred eceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcc
Q 003625 281 TSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDE 336 (807)
Q Consensus 281 ~~~~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~~ 336 (807)
....|.+++...+.+.+.+.. .+.++|.+..++.
T Consensus 232 a~~~v~sl~fspnrywL~~at----------------------~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAAT----------------------ATSIKIWDLESKA 265 (315)
T ss_pred CCCeEeeEEecCCceeEeecc----------------------CCceEEEeccchh
Confidence 234455666655666555443 3458999987643
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.5e-21 Score=206.36 Aligned_cols=189 Identities=22% Similarity=0.306 Sum_probs=158.6
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC--
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-- 134 (807)
+.+|+|+++|+|+.||.|+|||. .|.+..+|..|++.|+.++|+..|+.++|.+.||+|+.||+...+.. ++..+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~ 436 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI 436 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce
Confidence 47789999999999999999999 57788999999999999999999999999999999999999986654 576666
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCe-EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCC
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~ 210 (807)
...|++.+|. |..++.|+.|.. |.+|+.. .|+...++.+|+|||.+++|+ |+.++++ .|.+||+||+-..
T Consensus 437 QfscvavD~s-----GelV~AG~~d~F~IfvWS~q-TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 437 QFSCVAVDPS-----GELVCAGAQDSFEIFVWSVQ-TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred eeeEEEEcCC-----CCEEEeeccceEEEEEEEee-cCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 6789999998 888888988864 9999886 688899999999999999998 7888888 6999999998644
Q ss_pred -ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcC
Q 003625 211 -QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNV 260 (807)
Q Consensus 211 -~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~ 260 (807)
....+++... -+..++|. +|..++++ -||.|.+||+..+...+
T Consensus 511 ~~~vEtl~i~s-------dvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 511 SGTVETLEIRS-------DVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred CceeeeEeecc-------ceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 2233333322 24566774 78888888 89999999998765443
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=7.5e-22 Score=187.66 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=160.6
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecC--C-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH--R- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~--~- 134 (807)
.++++|++.++|+.||++++||+. |...+.|.+|...|.+++|++|.+.++||+.|.++++|+..++...++..+ +
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 478899999999999999999995 577899999999999999999999999999999999999988766665333 6
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
.|.|+.|+|+- ....|++++.|++|++|+.+ ..+....+.+|.+.++.+.++ |.+++++ .||.+.+||++.++
T Consensus 150 WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~-~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNE---SNPIIVSASWDKTVKVWNLR-NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCC---CCcEEEEccCCceEEEEccC-CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 99999999982 25689999999999999986 445567788899999999999 8888888 69999999999999
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+..+.... .+.+++|+++++.+++ .+..|+||++.+..
T Consensus 226 ~lysl~a~~-------~v~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 226 NLYSLEAFD-------IVNSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred eeEeccCCC-------eEeeEEecCCceeEeeccCCceEEEeccchh
Confidence 887755433 5778899866655544 88889999998765
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.88 E-value=1e-21 Score=211.73 Aligned_cols=188 Identities=19% Similarity=0.246 Sum_probs=165.2
Q ss_pred EEecCCEEEEEecCCeEEEEecCCC--------------------------------eeEEecCCCcceeEEEEcCCCCE
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGN--------------------------------QVKEFPAHTAAVNDLSFDVDGEY 107 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~--------------------------------~~~~~~~h~~~V~~l~~s~~g~~ 107 (807)
|+.++.++|.|..|..|++|.+... ...++.+|+++|..++|+|+.++
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 7778999999999999999987520 12357789999999999999999
Q ss_pred EEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeE
Q 003625 108 VGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVH 185 (807)
Q Consensus 108 l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~ 185 (807)
|++||.|++||+|.+.+..+. .+.+|. ||+.|.|+|. |.+||+++.|++-++|... ...+.+++.+|-+.|.
T Consensus 466 LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----GyYFatas~D~tArLWs~d-~~~PlRifaghlsDV~ 539 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----GYYFATASHDQTARLWSTD-HNKPLRIFAGHLSDVD 539 (707)
T ss_pred eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----ceEEEecCCCceeeeeecc-cCCchhhhcccccccc
Confidence 999999999999999996554 678888 9999999999 9999999999999999876 3577889999999999
Q ss_pred EEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 186 VVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 186 ~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
|+.|+ ..+++++ +|.+||+||+.+|..++.+.+|. ..+.+++++ .|.+|++| .|+.|.+||+..+...
T Consensus 540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~------~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 540 CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK------GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC------CceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 99999 5789888 79999999999999999886654 457888886 89999999 8999999999887643
No 15
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.88 E-value=4.9e-22 Score=184.19 Aligned_cols=136 Identities=34% Similarity=0.522 Sum_probs=127.4
Q ss_pred hcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHHHHhh-cCCCCCHHHHHH
Q 003625 607 QNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLR-SSQHYTLEKAYE 685 (807)
Q Consensus 607 ~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~~fL~-~~~~y~~~~al~ 685 (807)
+..+.++|+.||+.|.+. +.+..++.||++++..++ ..+.+||+|+++|+++++.++++||+ ++++||+++|++
T Consensus 3 ~~~~~~~~~~vv~~~~~~----~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~ 77 (140)
T smart00299 3 EVSDPIDVSEVVELFEKR----NLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGK 77 (140)
T ss_pred cCCCcCCHHHHHHHHHhC----CcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHH
Confidence 345789999999999854 368999999999999875 78899999999999999999999999 889999999999
Q ss_pred HHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHHhcCCc
Q 003625 686 ICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQCLNKP 747 (807)
Q Consensus 686 ~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~~~~~~ 747 (807)
+|++.+++++++|||+|+|++++|+++++++++|++.|++||++..++++|..+++++++.|
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~~~ 139 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDKP 139 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999765
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.88 E-value=6e-21 Score=182.54 Aligned_cols=184 Identities=20% Similarity=0.268 Sum_probs=157.9
Q ss_pred eEEEEe-cCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCcee-EEec
Q 003625 57 ASCVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (807)
Q Consensus 57 i~~~s~-~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (807)
++|+.. +.+.|++|+.|.+..+||+ +|..+..|.+|.+.|.+++++| +++.++||+-|+..++||++.+.+. .|.+
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 556544 6778889999999999999 5778999999999999999999 9999999999999999999997665 6899
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec--CCcCeEEEEEe--CCEEEEE-eCCcEEEEE
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~--~~~~V~~l~~~--~~~la~~-~d~~v~iwd 206 (807)
|. .|++|+|.|+ |.-|++|+.|++.++||.+- .....++.. -..+|++++|+ |+++..+ .|.++.+||
T Consensus 228 hesDINsv~ffP~-----G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 228 HESDINSVRFFPS-----GDAFATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred cccccceEEEccC-----CCeeeecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 99 9999999999 99999999999999999983 344444433 24689999999 8988887 899999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEE
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIAS 252 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~ 252 (807)
.-.++....+..|. ..+.++..+ +|..+++| ||.+++||.
T Consensus 302 tlk~e~vg~L~GHe------NRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKGERVGVLAGHE------NRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccceEEEeeccC------CeeEEEEECCCCcEEEecchhHheeecC
Confidence 99888888876554 457777775 78888888 999999994
No 17
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=9.6e-22 Score=191.43 Aligned_cols=209 Identities=18% Similarity=0.306 Sum_probs=172.7
Q ss_pred CceeeeecCC-CCccccCC--CceEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEe
Q 003625 37 PRLKYQRMGG-SLPSLLAN--DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS 112 (807)
Q Consensus 37 ~~l~~~~~~~-~~~~~~~~--~~i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~ 112 (807)
..++.|..+. ....++.+ +++.|+..+.+.|++|++|.+|++||. +|.++.++.+|...|..+.|+ ..+++|+|
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcS 294 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCS 294 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEec
Confidence 4455554432 23334444 458899999999999999999999999 578889999999999999998 56999999
Q ss_pred CCCcEEEEeccCCce----eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEE
Q 003625 113 DDGSVVINSLFTDEK----MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVV 187 (807)
Q Consensus 113 ~Dg~v~iwd~~~~~~----~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l 187 (807)
.|.++.+||+.+..- ..+.+|+ .|+.|.|+ .+++++++.|.++++|+.. ++..++++++|...|.|+
T Consensus 295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd-------~kyIVsASgDRTikvW~~s-t~efvRtl~gHkRGIACl 366 (499)
T KOG0281|consen 295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVWSTS-TCEFVRTLNGHKRGIACL 366 (499)
T ss_pred CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-------cceEEEecCCceEEEEecc-ceeeehhhhcccccceeh
Confidence 999999999987432 2467888 99999986 4699999999999999886 678889999999999999
Q ss_pred EEeCCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCCCcCCC
Q 003625 188 KWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSNVAN 262 (807)
Q Consensus 188 ~~~~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~~~~ 262 (807)
.+.|+++++| +|.+|++||+..|.+++.++.+.. .+.++.|.+ ..+++| .||+|+|||+..+..+.+.
T Consensus 367 QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe------LvRciRFd~-krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 367 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE------LVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred hccCeEEEecCCCceEEEEeccccHHHHHHhchHH------hhhheeecC-ceeeeccccceEEEEecccccCCccc
Confidence 9999999988 799999999999999998776654 466788855 455666 9999999999988765543
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=4.7e-20 Score=176.45 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=176.7
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC--c----e-eEE
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--E----K-MKF 130 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~----~-~~~ 130 (807)
.|+++++.|++++.||.+.|||. +++.++.+.....-|..++|+|.|+++|+||.|....||++.+. + + ..+
T Consensus 62 ~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 62 DWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred EecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee
Confidence 47889999999999999999998 67778888888889999999999999999999999999999864 2 2 247
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVY 205 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iw 205 (807)
.+|. .+.|+.|-++ ..+++|+.|.+..+||.. .+.....+++|.+.|.++.+. ++.++++ .|+..++|
T Consensus 142 ~gHtgylScC~f~dD------~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDD------NHILTGSGDMTCALWDIE-TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred cCccceeEEEEEcCC------CceEecCCCceEEEEEcc-cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 8888 9999999887 789999999999999997 788999999999999999998 3555555 79999999
Q ss_pred EcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeece
Q 003625 206 DAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSY 283 (807)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (807)
|++.+.+.+.+..+.. -+.++.| .+|.-+++| .|++.++||++..+.. .+...-...+
T Consensus 215 D~R~~~c~qtF~ghes------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~--------------a~ys~~~~~~ 274 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHES------DINSVRFFPSGDAFATGSDDATCRLYDLRADQEL--------------AVYSHDSIIC 274 (343)
T ss_pred eccCcceeEeeccccc------ccceEEEccCCCeeeecCCCceeEEEeecCCcEE--------------eeeccCcccC
Confidence 9999999999776653 4677777 488889999 8889999999987622 2222222234
Q ss_pred EEEeeeecC-CceEEEEee
Q 003625 284 YISGIAPFG-DCLVVLAYI 301 (807)
Q Consensus 284 ~i~gi~~~~-~~l~vl~~~ 301 (807)
.|.+++.-. .++++.+|.
T Consensus 275 gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred CceeEEEcccccEEEeeec
Confidence 444444444 778887774
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=9.3e-20 Score=194.47 Aligned_cols=155 Identities=13% Similarity=0.273 Sum_probs=133.4
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCC-CcEEEEeccC-CceeEEecCC-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD-GSVVINSLFT-DEKMKFDYHR- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D-g~v~iwd~~~-~~~~~~~~~~- 134 (807)
++++.-+.||+|-+.|...+|.+. ...++.+.-...+|..++|+..|.+||.|+.. |.+-||+..+ .-+.+.++|.
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~ 351 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD 351 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence 366667899999999999999995 45577777677799999999999999998765 8999999988 4466788888
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
.++|++++|+ |+.+++|+.||.|++|+.. .+-+..++..|...|+++.|+ |+.+.++ -||+|+.||+...+
T Consensus 352 ~i~~l~YSpD-----gq~iaTG~eDgKVKvWn~~-SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 352 RITSLAYSPD-----GQLIATGAEDGKVKVWNTQ-SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ceeeEEECCC-----CcEEEeccCCCcEEEEecc-CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 9999999999 9999999999999999886 577888999999999999999 7777777 59999999998776
Q ss_pred eEEeeeCC
Q 003625 212 RITFIERP 219 (807)
Q Consensus 212 ~~~~i~~~ 219 (807)
..+++..|
T Consensus 426 NfRTft~P 433 (893)
T KOG0291|consen 426 NFRTFTSP 433 (893)
T ss_pred eeeeecCC
Confidence 66655544
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=7.7e-20 Score=180.14 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=136.1
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
+++|+.+++|+|+.|..-++|+. +|.....+.+|+.+|+++.||.+|.+||||+.+|.|+||...++... .+...- .
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d 150 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED 150 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCc
Confidence 57788899999999999999999 56667888999999999999999999999999999999999986654 454333 7
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
+.=+.|||. +..++.|+.||.+.+|... .+...+++.+|+.++++=.|. |+.++++ .|++|++|+..++++
T Consensus 151 ieWl~WHp~-----a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 151 IEWLKWHPR-----AHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred eEEEEeccc-----ccEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 888999998 8999999999999999875 346678899999999999998 7888877 799999999999999
Q ss_pred EEeeeCC
Q 003625 213 ITFIERP 219 (807)
Q Consensus 213 ~~~i~~~ 219 (807)
+..+...
T Consensus 225 ~~~~~~~ 231 (399)
T KOG0296|consen 225 LHKITQA 231 (399)
T ss_pred eEEeccc
Confidence 9877644
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=195.40 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=163.8
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCeeEEecCCC-cceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~ 135 (807)
.|+++|.++++|+.+|.|++|+.+.+.++.+++|. ..|++++|||+...++|||+||+|+|||....+ -..+.+|. .
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 48889999999999999999999888888888766 899999999999999999999999999998744 34678899 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
|+|++|+|. ...+++||.|..|++||.+ .+.+..++++|...|.++.|+ +++++++ .|..++++|+++.+.
T Consensus 225 VksvdWHP~-----kgLiasgskDnlVKlWDpr-Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 225 VKSVDWHPT-----KGLIASGSKDNLVKLWDPR-SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cceeccCCc-----cceeEEccCCceeEeecCC-CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 999999999 7899999999999999998 789999999999999999999 7888887 699999999998777
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+..+..+. ..+.++.|+ ...+|++| +||.|..|.+....
T Consensus 299 l~~~r~Hk------kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 299 LFTYRGHK------KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred HHHhhcch------hhheeeccccccccceeeccCCCceEEEeccccc
Confidence 77765554 347788886 56677777 99999999987433
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=185.32 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=162.8
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
++.|...++++|+.|++|+|||+ +|....++.+|...|..+++|+-..|+.+++.|+.|+.||+...++. .+.+|- .
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~ 237 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG 237 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccce
Confidence 45667889999999999999999 57777889999999999999999999999999999999999987765 577777 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEEeCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~~~~ 212 (807)
|.|++.+|. -..+++|+.|.++++||.+ ....+.++.+|..+|..+.+. |+++.++.|++|++||++.++.
T Consensus 238 V~~L~lhPT-----ldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt 311 (460)
T KOG0285|consen 238 VYCLDLHPT-----LDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT 311 (460)
T ss_pred eEEEecccc-----ceeEEecCCcceEEEeeec-ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce
Confidence 999999999 6899999999999999998 667788999999999999998 7888888999999999999998
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCCCc
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQSN 259 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~~~ 259 (807)
..++..+... +.+++.. ....++++..+.|+-|++..+...
T Consensus 312 ~~tlt~hkks------vral~lhP~e~~fASas~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 312 MITLTHHKKS------VRALCLHPKENLFASASPDNIKQWKLPEGEFL 353 (460)
T ss_pred eEeeecccce------eeEEecCCchhhhhccCCccceeccCCccchh
Confidence 8887666533 4455554 445677778889999998776633
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=1.3e-18 Score=185.91 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=167.9
Q ss_pred CCceeeeecCCCCccccCCCc--eEEEE--ecCCEEEEEecCCeEEEEecCCCe-----eEEecCCCcceeEEEEcCCC-
Q 003625 36 EPRLKYQRMGGSLPSLLANDA--ASCVA--VAERMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDVDG- 105 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~--i~~~s--~~~~~la~gs~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~~g- 105 (807)
.|.+++....+.-..++.+|. +.+++ .+|-+|++|+.|.++++|.++... +....+|++.|.+++++..|
T Consensus 345 s~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred CCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 345555555555555666654 66665 367799999999999999883222 45667899999999998755
Q ss_pred CEEEEEeCCCcEEEEeccCCc----ee------EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc
Q 003625 106 EYVGSCSDDGSVVINSLFTDE----KM------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (807)
Q Consensus 106 ~~l~s~~~Dg~v~iwd~~~~~----~~------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (807)
.+|+++|.|+++++|++...+ .. ....|. .|+||+.+|+ ...|+||+.|.+.++|+.. +....
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-----dkLiAT~SqDktaKiW~le-~~~l~ 498 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-----DKLIATGSQDKTAKIWDLE-QLRLL 498 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-----CceEEecccccceeeeccc-CceEE
Confidence 579999999999999998622 11 123455 9999999999 8999999999999999886 67778
Q ss_pred eEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEE
Q 003625 175 QVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIK 249 (807)
Q Consensus 175 ~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~ 249 (807)
.++.+|...|.++.|+ .++++++ .|++|+||.+.+..++++++.|.. .+-...| .++..|+++ .||-|+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~------aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS------AVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc------eeEeeeeeeCCcEEEeccCCCcEE
Confidence 8999999999999999 5688887 799999999999999999877653 3556666 466777766 999999
Q ss_pred EEEEeeCC
Q 003625 250 IASIKTNQ 257 (807)
Q Consensus 250 vw~~~~~~ 257 (807)
+|+++++.
T Consensus 573 lWnikt~e 580 (775)
T KOG0319|consen 573 LWNIKTNE 580 (775)
T ss_pred EEeccchh
Confidence 99999876
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=169.83 Aligned_cols=205 Identities=13% Similarity=0.166 Sum_probs=163.7
Q ss_pred CceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCc
Q 003625 37 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS 116 (807)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~ 116 (807)
|...|..+++.+..+ .|..+|+++++|+.||+++|||+.....+..-.|.++|+++..+|+...|++|..+|.
T Consensus 75 Pv~t~e~h~kNVtaV-------gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAV-------GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred ceeEEeccCCceEEE-------EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCc
Confidence 666666665555444 6888999999999999999999976555666678899999999999999999999999
Q ss_pred EEEEeccCCceeE--EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-----ccceEeecCCcCeEEEE
Q 003625 117 VVINSLFTDEKMK--FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-----YRDQVLHSGEGPVHVVK 188 (807)
Q Consensus 117 v~iwd~~~~~~~~--~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-----~~~~~~~~~~~~V~~l~ 188 (807)
|++||+....+.. +.... +|.+++..|+ |.+++.+...|+..+|+..-.. .+...+..|++-+..+.
T Consensus 148 irvWDl~~~~c~~~liPe~~~~i~sl~v~~d-----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 148 IRVWDLGENSCTHELIPEDDTSIQSLTVMPD-----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred EEEEEccCCccccccCCCCCcceeeEEEcCC-----CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 9999999865543 23333 9999999999 9999999999999999864211 33445677999999999
Q ss_pred Ee--CCEEEEE-eCCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 189 WR--TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 189 ~~--~~~la~~-~d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
++ ++++|++ +|.+++||+..+. +....+. .+..|+...+|+ ++.+|++| .|+.+++|++..++..
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~------gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT------GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCceeeEEEee------cCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 99 6888887 7999999999876 2222333 334567777775 88999999 8999999999988743
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.7e-19 Score=188.55 Aligned_cols=187 Identities=17% Similarity=0.267 Sum_probs=160.9
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC--ceeEEecCC-c
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--EKMKFDYHR-P 135 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~~~~~~~~~-~ 135 (807)
|-+-.+++++|+.|+.|+||+. ++..++.|.+|.+-|.+++.+|.-.+++|+|+|-+|++||..++ ...++.+|. .
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 5556789999999999999999 57789999999999999999999999999999999999999883 345799999 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-C---CEEEEE-eCCcEEEEEcCCC
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-T---SLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~---~~la~~-~d~~v~iwd~~~~ 210 (807)
|.+|+|+|. +.+.|++++-|++|++|... ...+..++.+|+..|+|+.+- | .+++++ .|.+++|||..+.
T Consensus 143 VMqv~fnPk----D~ntFaS~sLDrTVKVWslg-s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 143 VMQVAFNPK----DPNTFASASLDRTVKVWSLG-SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred EEEEEecCC----CccceeeeeccccEEEEEcC-CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 999999998 57899999999999999876 456778899999999999998 2 355555 7999999999999
Q ss_pred ceEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEE-eCCcEEEEEEeeCC
Q 003625 211 QRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+|+.+++.|.. -+..+.|.+ -.++++| .||++++|+..+-.
T Consensus 218 ~CV~TLeGHt~------Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 218 SCVQTLEGHTN------NVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred HHHHHhhcccc------cceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 99999776643 356666654 4677777 99999999877644
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.84 E-value=5e-21 Score=190.75 Aligned_cols=188 Identities=16% Similarity=0.258 Sum_probs=160.1
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR- 134 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~- 134 (807)
+.+|.|.|+.|++|+..|.+.+|+..+-. -..+++|.++|+++.|+++|.+++||+.+|.|++|+..-.-+..+..|.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 56799999999999999999999984332 2345789999999999999999999999999999998877776665554
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCcEEEEEcCCC
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~v~iwd~~~~ 210 (807)
.|++++|+|+ ...|++++.||+|++|+.. ......++.+|.-.|.++.|++ .+++++ .|+.|++||.+++
T Consensus 181 eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~-~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 181 EAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFR-MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhhheeccCCC-----CceeEEecCCCeEEEEecc-CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 9999999998 7899999999999999876 4566677899999999999993 566666 6889999999999
Q ss_pred ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 211 QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
.++.++..++ ..+..+.|+ ++.+|+++ .|..++++|+++-
T Consensus 255 ~cl~tlh~HK------ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 255 SCLATLHGHK------NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred chhhhhhhcc------ceEEEEEEcCCCCeeEEccCCceEEEEehhHh
Confidence 9999866554 357788886 67888888 8889999999843
No 27
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=6.4e-19 Score=180.07 Aligned_cols=215 Identities=24% Similarity=0.237 Sum_probs=168.5
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCcee-EEecCC-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM-KFDYHR- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~- 134 (807)
+|..+|+++|.|...|.|+|||.+.+. ++.+.+|+.+|..+.|+|.+ ..+++|++|+.+++||+.+..+. .+.+|.
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD 154 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD 154 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc
Confidence 466689999999999999999975543 67889999999999999965 46788899999999999997765 578888
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCce
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQR 212 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~ 212 (807)
.|.|.+|+|. ++..+++||.||.|++||.+..+ ....--.|..||..+.+- |..+++++.+.|+|||+.+|..
T Consensus 155 YVR~g~~~~~----~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 155 YVRCGDISPA----NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred eeEeeccccC----CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCce
Confidence 9999999998 46799999999999999987444 333334578899999887 6899999999999999996654
Q ss_pred EE-eeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeee
Q 003625 213 IT-FIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIA 289 (807)
Q Consensus 213 ~~-~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~ 289 (807)
.- ... .|...++|+.+. ++..|++| -|+.|++|++..- .+++.|.....|-+++
T Consensus 230 ll~~~~------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-----------------Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 230 LLTSMF------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-----------------KVVHSWKYPGPVLSIA 286 (487)
T ss_pred ehhhhh------cccceEEEEEeecCCceEeecccccceEEEEccce-----------------EEEEeeecccceeeEE
Confidence 43 322 133458888884 66777777 8999999995432 4667777766666655
Q ss_pred ecC-CceEEEEee
Q 003625 290 PFG-DCLVVLAYI 301 (807)
Q Consensus 290 ~~~-~~l~vl~~~ 301 (807)
-.. ++.+++|-.
T Consensus 287 vs~dd~t~viGms 299 (487)
T KOG0310|consen 287 VSPDDQTVVIGMS 299 (487)
T ss_pred ecCCCceEEEecc
Confidence 555 666666643
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.84 E-value=5.4e-19 Score=165.41 Aligned_cols=194 Identities=18% Similarity=0.244 Sum_probs=155.3
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC---CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Eec
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL---GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY 132 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~ 132 (807)
..++.|+++.||+|+. -.|++||++ ..++.++.+|+..|+++.|..+|+++.|||+||+++|||++...+.+ +..
T Consensus 45 rLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~ 123 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH 123 (311)
T ss_pred eEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC
Confidence 4578899999988876 579999994 23588999999999999999999999999999999999999966665 444
Q ss_pred CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCC
Q 003625 133 HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 133 ~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~ 209 (807)
..+|++|..+|+ ...+++|..+|.|++||..........+.....+|.++... |.+++++ +.|...+|++-+
T Consensus 124 ~spVn~vvlhpn-----QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 124 NSPVNTVVLHPN-----QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCCcceEEecCC-----cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 459999999999 78999999999999999875444445555666778887765 8888888 678899999987
Q ss_pred CceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 210 DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
++....+........|..++..+.++ ++.+|+++ .|.+++||+....
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 66555443333344555566666665 77888887 8999999998754
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.84 E-value=2.4e-20 Score=181.81 Aligned_cols=189 Identities=20% Similarity=0.230 Sum_probs=158.9
Q ss_pred CceEEEEecCCEEEEEecCCeEEEEecCCC-eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Eec
Q 003625 55 DAASCVAVAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY 132 (807)
Q Consensus 55 ~~i~~~s~~~~~la~gs~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~ 132 (807)
..+.|+..+...+++|..|.+|+|||.+.. ....+.+|+++|.|+.++ .+.++|||.|.+|+|||..++++.. +-+
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 458899999999999999999999999654 467889999999888876 5699999999999999999988764 566
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcC
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~ 208 (807)
|. .|..+.|+. .++++++.|.++.+|+..-.. ....++.+|...|+.+.|+.++++++ +|.+|++|++.
T Consensus 276 HceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 276 HCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence 66 999999975 489999999999999875332 33467789999999999998888888 79999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
++..++++..+... +.|+.+ .++++++| .|++|++|++..|.-.
T Consensus 349 t~efvRtl~gHkRG------IAClQY-r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRG------IACLQY-RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ceeeehhhhccccc------ceehhc-cCeEEEecCCCceEEEEeccccHHH
Confidence 99999998777533 333333 67888888 9999999999987633
No 30
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3e-20 Score=179.39 Aligned_cols=187 Identities=17% Similarity=0.268 Sum_probs=153.3
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCee--------EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQV--------KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM- 128 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~--------~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~- 128 (807)
.|+|+|+++++|+-||.|.+||.. |+.. ..+.-+..+|.|++||.|...+++|+.||.|++|.+.+|.|.
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 499999999999999999999994 4432 233457889999999999999999999999999999999886
Q ss_pred EEe-cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEE
Q 003625 129 KFD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (807)
Q Consensus 129 ~~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~ 203 (807)
.+. .|. .|+|+.|+.+ +..+++++.|.+++++-.. .|+..+.+.+|.+.|+...|. |..+.++ +||+|+
T Consensus 300 rFdrAHtkGvt~l~FSrD-----~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRD-----NSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred HhhhhhccCeeEEEEccC-----cchhhcccccceEEEeccc-cchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 464 677 9999999999 8899999999999998654 678888899999999999998 6666655 899999
Q ss_pred EEEcCCCceEEeeeCCCCCCCCCCCCCeeee---eCCCEEEEEeCCcEEEEEEee
Q 003625 204 VYDAANDQRITFIERPRGSPRPELLLPHLVW---QDDTLLVIGWGTYIKIASIKT 255 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~---~~~~~l~~g~d~~i~vw~~~~ 255 (807)
+|+..++.++.++..... +..+.++.. +..+++++...++|+|.++..
T Consensus 374 vW~~KtteC~~Tfk~~~~----d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 374 VWHGKTTECLSTFKPLGT----DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred EecCcchhhhhhccCCCC----cccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999999998765542 233444433 244455555899999988753
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=178.99 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=169.5
Q ss_pred CCCCccccCCCc--eE--EEEecCCEEEEEecCCeEEEEecCC--CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEE
Q 003625 45 GGSLPSLLANDA--AS--CVAVAERMIALGTHAGTVHILDFLG--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (807)
Q Consensus 45 ~~~~~~~~~~~~--i~--~~s~~~~~la~gs~dg~I~i~d~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (807)
++.+...+.+|. +. +++..|+++|+++.|-.+.+||..+ .+++...+|...|.+++|-|.|.+|+|++.|.+|+
T Consensus 139 tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 139 TGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred chhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 344444444433 33 3555789999999999999999954 44778889999999999999999999999999999
Q ss_pred EEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe------
Q 003625 119 INSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR------ 190 (807)
Q Consensus 119 iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~------ 190 (807)
+|++.++.+. ++.+|+ .|..++.+.+ |..+++++.|.++++|... .+.....+.+|+-+|.+++|.
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~D-----Gti~As~s~dqtl~vW~~~-t~~~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQD-----GTIIASCSNDQTLRVWVVA-TKQCKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCC-----eeEEEecCCCceEEEEEec-cchhhhhhhccccceEEEEecccccCc
Confidence 9999998876 689999 9999999999 8999999999999999775 456677888999999999997
Q ss_pred ------C-----CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 191 ------T-----SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 191 ------~-----~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
| +++.++ .|++|++||+.++.++.++..+ +.+++.++|+ .|++++++ .|+++++||++.+
T Consensus 293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh------dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH------DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc------cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 2 477777 6999999999999999996554 5689999996 67777777 8899999999987
Q ss_pred CCc
Q 003625 257 QSN 259 (807)
Q Consensus 257 ~~~ 259 (807)
+..
T Consensus 367 ~cm 369 (406)
T KOG0295|consen 367 QCM 369 (406)
T ss_pred eee
Confidence 633
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=9.9e-19 Score=194.29 Aligned_cols=192 Identities=19% Similarity=0.337 Sum_probs=162.1
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecC-CC--eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc-CCce-eE
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFL-GN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF-TDEK-MK 129 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~-~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~~~~-~~ 129 (807)
++| |+++|+.+++++.++.+++|+.. +. ..+.+.+|...|++++|+|+|+++++|+.|++++|||+. .+.+ .+
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 444 78899999999999999999994 33 456668899999999999999999999999999999994 4454 46
Q ss_pred EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEE
Q 003625 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVY 205 (807)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iw 205 (807)
+.+|. .|++++|+|. ++.+++|+.|++|++|+.. .+.....+.+|.++|++++|+ |++++++ .|+.|++|
T Consensus 242 l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW 315 (456)
T ss_pred ecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEecc-CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence 88999 9999999999 7999999999999999997 478889999999999999999 7888877 69999999
Q ss_pred EcCCCc--eEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 206 DAANDQ--RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 206 d~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
|+.++. +...+..... .. .+.++.|+ ++.+++++ .|+.+++|++..+..
T Consensus 316 d~~~~~~~~~~~~~~~~~---~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAEN---SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred ECCCCceeeeecccCCCC---CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 999998 4455443321 12 46777885 77888888 677999999987763
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=5.8e-19 Score=196.14 Aligned_cols=191 Identities=20% Similarity=0.268 Sum_probs=158.3
Q ss_pred EEEEecCCEEEEEecCCeEEEEec-C-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC
Q 003625 58 SCVAVAERMIALGTHAGTVHILDF-L-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~-~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (807)
.+|+|+++++++|+.|++|+|||. . +..++++++|...|++++|+|+|+.+++|+.|++|+|||+.++++. .+.+|.
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 468999999999999999999999 4 3568999999999999999999999999999999999999997766 688999
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc--cceEeecCCc--CeEEEEEe--CCEEEEE-eCCcEEEEE
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEG--PVHVVKWR--TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~~~~~~~--~V~~l~~~--~~~la~~-~d~~v~iwd 206 (807)
+|++++|+++ ++.+++++.||.|++||.. .+. ....+.++.. ++++++|+ |.+++++ .|+.+++||
T Consensus 289 ~~is~~~f~~d-----~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 289 DGISGLAFSPD-----GNLLVSASYDGTIRVWDLE-TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred CceEEEEECCC-----CCEEEEcCCCccEEEEECC-CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 9999999999 8999999999999999986 333 2345555544 59999998 7788777 688999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeee-eeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLV-WQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~-~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+..+.....+..+.... ....+.. ...+..+++| .|+.|++|++.++.
T Consensus 363 l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 363 LRSGKSVGTYTGHSNLV---RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred ccCCcceeeecccCCcc---eeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 99998888776665331 0111111 2378888888 89999999998754
No 34
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=4.2e-19 Score=181.79 Aligned_cols=193 Identities=18% Similarity=0.248 Sum_probs=145.5
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCe-----eEEecC-CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee----
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQ-----VKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---- 128 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~-----~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---- 128 (807)
++.|.|..+++|+.|-+|++||..|-. .+.+.. ....|+++.|++.|..|++.+.....+++|-....+.
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeec
Confidence 466789999999999999999997643 223322 3447999999999999999999999999997763321
Q ss_pred ---------EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec-----CCcCeEEEEEe--C
Q 003625 129 ---------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-----GEGPVHVVKWR--T 191 (807)
Q Consensus 129 ---------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~-----~~~~V~~l~~~--~ 191 (807)
..++|. .++|.+|+|. +...|++++.||++++|+.........++.. ..-+++.++|+ |
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG 329 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc
Confidence 235677 8999999998 4678999999999999998755555555543 34578999999 7
Q ss_pred CEEEEE-eCCcEEEEEcCCCceE--EeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 192 SLIAWA-NDAGVKVYDAANDQRI--TFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 192 ~~la~~-~d~~v~iwd~~~~~~~--~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
.++|++ .||+|.+|+..+.... ..+.. ......-+.|++|+ +|++|++- .|+++++||++....
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~---AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKD---AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred chhhhcccCCceeeeecCCcccccceEeee---ccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 888877 8999999998643322 12211 11122357889997 77777776 999999999997653
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=165.34 Aligned_cols=188 Identities=17% Similarity=0.170 Sum_probs=154.5
Q ss_pred eEEEEec-CCEEEEEecCCeEEEEecCC-Ce--eE-Ee-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc---e
Q 003625 57 ASCVAVA-ERMIALGTHAGTVHILDFLG-NQ--VK-EF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---K 127 (807)
Q Consensus 57 i~~~s~~-~~~la~gs~dg~I~i~d~~~-~~--~~-~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~ 127 (807)
..+|+|. |..||+|+.|+.|++|+..+ .. .+ .+ .+|+.+|.+++|+|.|++|++||-|.++.||.-..++ +
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 3588887 88999999999999999973 32 12 22 3699999999999999999999999999999776543 3
Q ss_pred eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeEEEEEeC--CEEEEE-eCCc
Q 003625 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAG 201 (807)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~ 201 (807)
.++.+|. .|.|++|+++ |+++|+++.|..|-+|...-.. ....++.+|...|..+.|+| .+|+++ .|++
T Consensus 99 ~~lEGHEnEVK~Vaws~s-----G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSAS-----GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred eeeeccccceeEEEEcCC-----CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence 4689999 9999999999 9999999999999999876333 56788999999999999996 777777 6999
Q ss_pred EEEEEcC-C--CceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEee
Q 003625 202 VKVYDAA-N--DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 202 v~iwd~~-~--~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~ 255 (807)
|++|.-. . ..+..++..+.. .+.++.|. .|..|+++ .|++|+||...+
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~------TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHEN------TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccc------eEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 9999876 2 355666655542 46778886 47788888 889999998663
No 36
>PTZ00421 coronin; Provisional
Probab=99.83 E-value=1.8e-18 Score=191.23 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=142.7
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecCC--------CeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCcee
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFLG--------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~~--------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~ 128 (807)
+|+| ++++|++|+.||+|++||+.. ..+..+.+|...|.+++|+|++ ..|++|+.|++|+|||+.++...
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 5777 788999999999999999842 2356788999999999999986 68999999999999999987654
Q ss_pred -EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC-eEEEEEe--C-CEEEEE----e
Q 003625 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP-VHVVKWR--T-SLIAWA----N 198 (807)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~-V~~l~~~--~-~~la~~----~ 198 (807)
.+..|. .|.+++|+|+ +..+++|+.||.|++||.+ .+.....+.+|.+. +..+.|. + .+++++ .
T Consensus 162 ~~l~~h~~~V~sla~spd-----G~lLatgs~Dg~IrIwD~r-sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLD-----GSLLCTTSKDKKLNIIDPR-DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred EEEcCCCCceEEEEEECC-----CCEEEEecCCCEEEEEECC-CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 567777 9999999999 8999999999999999987 45666667778765 3466777 3 344444 2
Q ss_pred CCcEEEEEcCCCc-eEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 199 DAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 199 d~~v~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
|+.|++||+++.. .......+. ...+....|+ ++..+++| .|+.|++|++..+.
T Consensus 236 Dr~VklWDlr~~~~p~~~~~~d~-----~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 236 QRQIMLWDTRKMASPYSTVDLDQ-----SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEeCCCCCCceeEeccCC-----CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 7899999998654 333222211 1112223443 56666665 48999999998765
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=5.4e-20 Score=172.65 Aligned_cols=184 Identities=19% Similarity=0.267 Sum_probs=154.5
Q ss_pred EEe-cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccC-CceeEEecCC-
Q 003625 60 VAV-AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFT-DEKMKFDYHR- 134 (807)
Q Consensus 60 ~s~-~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~- 134 (807)
|++ .+..+++++.||+|++|+.+ ++.++++.+|...|....|+|. ++.++++|.||++++||++. ++...+..|.
T Consensus 112 wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 112 WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 554 46678889999999999995 6668999999999999999994 77899999999999999987 7777788898
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEE-eCCcEEEEEcCCC
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~-~d~~v~iwd~~~~ 210 (807)
.+.|+.|+.- +.+.++||+.|+.|+.||.+....+...+.+|.-.|..++|++ .+++++ .|-+++|||...+
T Consensus 192 Eil~cdw~ky----~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 192 EILCCDWSKY----NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred eeEeeccccc----CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999875 4689999999999999999877788889999999999999994 678877 5999999998744
Q ss_pred c-eEEeeeCCCCCCCCCCCCCeeeee--CCCEEEE-EeCCcEEEEEE
Q 003625 211 Q-RITFIERPRGSPRPELLLPHLVWQ--DDTLLVI-GWGTYIKIASI 253 (807)
Q Consensus 211 ~-~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~-g~d~~i~vw~~ 253 (807)
. .+.++. .|..+++.+.|+ ++..++. |||+.++||+.
T Consensus 268 ds~~e~~~------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVD------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhh------ccceEEeccccccccCceeeecccccceeeecc
Confidence 3 333433 345678889997 5555665 49999999974
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.5e-19 Score=175.37 Aligned_cols=227 Identities=19% Similarity=0.251 Sum_probs=182.0
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--CceeEEecCC-c
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-P 135 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~ 135 (807)
+.|+...+++++.|++|++||. +|.....+++|+++|.+++|+..|.++++++.|-.+++||..+ ..+....+|. .
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 5667778888999999999999 6777889999999999999999999999999999999999987 3344677788 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
|.+++|-|. |.++++++.|.+|+.|+.. ++....++.+|...|..++.+ |.++|++ +|.++++|-+.++++
T Consensus 196 vS~V~f~P~-----gd~ilS~srD~tik~We~~-tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~ 269 (406)
T KOG0295|consen 196 VSSVFFLPL-----GDHILSCSRDNTIKAWECD-TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC 269 (406)
T ss_pred eeeEEEEec-----CCeeeecccccceeEEecc-cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh
Confidence 999999999 8999999999999999987 789999999999999999998 7888888 799999999999976
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee----------------CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEE
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ----------------DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDI 275 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~----------------~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~ 275 (807)
...+..+. ..+-+++|. .++.+.+| +|++|++||+.++. -+
T Consensus 270 k~~lR~hE------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----------------cL 327 (406)
T KOG0295|consen 270 KAELREHE------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----------------CL 327 (406)
T ss_pred hhhhhccc------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----------------EE
Confidence 65544332 234445552 23688888 99999999998875 12
Q ss_pred EEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCc
Q 003625 276 VASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNND 335 (807)
Q Consensus 276 ~~~~~~~~~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~ 335 (807)
.....-+.+|+|++.-...-.++... ....||+.|+++.
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~Sca---------------------DDktlrvwdl~~~ 366 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCA---------------------DDKTLRVWDLKNL 366 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEe---------------------cCCcEEEEEeccc
Confidence 22233478888887764222233322 1457999999873
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.81 E-value=2.2e-19 Score=183.05 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=158.9
Q ss_pred eEE--EEe-cCCEEEEEecCCeEEEEec--CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EE
Q 003625 57 ASC--VAV-AERMIALGTHAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (807)
Q Consensus 57 i~~--~s~-~~~~la~gs~dg~I~i~d~--~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~ 130 (807)
|++ |.| .+.+|++|+.|+.|+||++ ++.+++++.+|..+|.+++|+++|..++|+|-|+.+++||+.+|++. .+
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence 555 667 7889999999999999999 57889999999999999999999999999999999999999999887 46
Q ss_pred ecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--C-CEEEEEeCCcEEEEEc
Q 003625 131 DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDA 207 (807)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~-~~la~~~d~~v~iwd~ 207 (807)
.....+.|+.|+|+ +.+.|++|+.|+.|+.||.+ .+...+.+..|-++|..+.|- | +++.++.|++++||+.
T Consensus 297 ~~~~~~~cvkf~pd----~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 297 HLDKVPTCVKFHPD----NQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred ecCCCceeeecCCC----CCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 66669999999999 35899999999999999997 566666677788999999998 5 4555558999999998
Q ss_pred CCCceEEeeeCCCC------------------------------------------CCCCCCCCCeeeee-CCCEEEEE-
Q 003625 208 ANDQRITFIERPRG------------------------------------------SPRPELLLPHLVWQ-DDTLLVIG- 243 (807)
Q Consensus 208 ~~~~~~~~i~~~~~------------------------------------------~~~~~~~~~~l~~~-~~~~l~~g- 243 (807)
+....+..+..+.. ......+.+.+.|+ +|.+|++|
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 86643332211100 00112234556665 88999999
Q ss_pred eCCcEEEEEEeeCC
Q 003625 244 WGTYIKIASIKTNQ 257 (807)
Q Consensus 244 ~d~~i~vw~~~~~~ 257 (807)
.+|.+.+||.++..
T Consensus 452 sdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTK 465 (503)
T ss_pred CCccEEEeechhhh
Confidence 99999999998765
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=8.3e-19 Score=168.69 Aligned_cols=203 Identities=16% Similarity=0.215 Sum_probs=158.7
Q ss_pred CCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCCCe--eEEecCCCcceeEEEEcCCCCEEEEEeC
Q 003625 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQ--VKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (807)
.|.+....+++.+..+ .|+|+|..+|+|+.|..|.+|+..|.. ...+++|+++|..+.|.+|++.++|+|.
T Consensus 38 ap~m~l~gh~geI~~~-------~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTI-------KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred chhhhcCCCcceEEEE-------EECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC
Confidence 3444444455544433 699999999999999999999986654 6778899999999999999999999999
Q ss_pred CCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-
Q 003625 114 DGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR- 190 (807)
Q Consensus 114 Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~- 190 (807)
|.+|+.||..+|++. ++..|. -|+++. |. +.+..++.+|+.||++++||.+ .....+++ ...-+++++.|.
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~--rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~-~~kyqltAv~f~d 184 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS--RRGPQLVCSGSDDGTLKLWDIR-KKEAIKTF-ENKYQLTAVGFKD 184 (338)
T ss_pred CceEEEEecccceeeehhccccceeeecC--cc--ccCCeEEEecCCCceEEEEeec-ccchhhcc-ccceeEEEEEecc
Confidence 999999999997765 688888 777776 44 2345788899999999999987 33333333 235679999998
Q ss_pred -C-CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 191 -T-SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 191 -~-~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+ +.+.++-|+.|++||++.+....+...+... +..+.-+ .|..+.+- -|.++++||++.-.
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt------It~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT------ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEeecccCc------eeeEEeccCCCccccccccceEEEEEecccC
Confidence 3 5555567999999999999988887776543 5566654 55555555 89999999998654
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.4e-18 Score=159.96 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=125.4
Q ss_pred EEEEecCCEEEEEecCCeEEEEecC---CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc---e-eEE
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFL---GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE---K-MKF 130 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~---~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~---~-~~~ 130 (807)
.+|+|+|++||+|+.|+++.||.-. ...+..+.+|...|.+++|+++|++||+|+.|..|-||....+. + ..+
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 3799999999999999999999874 23478889999999999999999999999999999999988532 3 357
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~i 204 (807)
+.|. -|..|.|||. ..++++++.|.+|++|...... ....++.+|.+.|.++.|+ |..++++ .|++|+|
T Consensus 147 ~~HtqDVK~V~WHPt-----~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPT-----EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred ccccccccEEEEcCC-----cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 8888 9999999998 7899999999999999654222 5678899999999999999 6666665 7999999
Q ss_pred EEcC
Q 003625 205 YDAA 208 (807)
Q Consensus 205 wd~~ 208 (807)
|-..
T Consensus 222 w~~~ 225 (312)
T KOG0645|consen 222 WRLY 225 (312)
T ss_pred eeec
Confidence 9843
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.3e-19 Score=166.62 Aligned_cols=188 Identities=14% Similarity=0.225 Sum_probs=155.1
Q ss_pred EEEe-cCCEEEEEecCCeEEEEec--CCCeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccC-CceeEEecC
Q 003625 59 CVAV-AERMIALGTHAGTVHILDF--LGNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFT-DEKMKFDYH 133 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~--~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~ 133 (807)
+|++ +.+.+++++.||++++||. ...+++.++.|...|.++.|++. +..++++|-||+|++|+... ..+.++.+|
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 6776 5778999999999999997 35668899999999999999985 55678889999999999877 456789999
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEcC
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~~ 208 (807)
. .|...+|+|. .++.|++++.||.+++||.+..|+.. .+..|...|.++.|+ .++++++ .|+.|++||++
T Consensus 147 ~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 147 NSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred ccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 9 9999999998 47899999999999999988665444 488899999999999 6788888 79999999998
Q ss_pred CC-ceEEeeeCCCCCCCCCCCCCeeeeeC--CCEEEEE-eCCcEEEEEEeeCC
Q 003625 209 ND-QRITFIERPRGSPRPELLLPHLVWQD--DTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~-~~~~~i~~~~~~~~~~~~~~~l~~~~--~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+- .++..+.. |...+..+.|++ ..+|+++ .|-+++||+...+.
T Consensus 222 ~~r~pl~eL~g------h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 222 NLRTPLFELNG------HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred hccccceeecC------CceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 64 44555433 344567788863 4577777 88899999987554
No 43
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=6.3e-18 Score=187.66 Aligned_cols=187 Identities=10% Similarity=0.124 Sum_probs=139.1
Q ss_pred EEEec-CCEEEEEecCCeEEEEecC-CC--------eeEEecCCCcceeEEEEcCCCCE-EEEEeCCCcEEEEeccCCce
Q 003625 59 CVAVA-ERMIALGTHAGTVHILDFL-GN--------QVKEFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEK 127 (807)
Q Consensus 59 ~~s~~-~~~la~gs~dg~I~i~d~~-~~--------~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~ 127 (807)
+|+|+ +++||+|+.||+|++||+. +. .+..+.+|...|++++|+|++.. ++||+.||+|++||+.++..
T Consensus 81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~ 160 (568)
T PTZ00420 81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR 160 (568)
T ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 47775 7899999999999999984 21 23467889999999999999876 47899999999999998764
Q ss_pred e-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEE-----Ee--CCEEEE-Ee
Q 003625 128 M-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK-----WR--TSLIAW-AN 198 (807)
Q Consensus 128 ~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~-----~~--~~~la~-~~ 198 (807)
. .+..+..|.+++|+|+ |..+++++.|+.|++||.+ .+.....+.+|.+.+.+.. |+ +.++++ +.
T Consensus 161 ~~~i~~~~~V~Slswspd-----G~lLat~s~D~~IrIwD~R-sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 161 AFQINMPKKLSSLKWNIK-----GNLLSGTCVGKHMHIIDPR-KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred EEEEecCCcEEEEEECCC-----CCEEEEEecCCEEEEEECC-CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 4 4554449999999999 8999999999999999987 5666677888887654432 22 345554 54
Q ss_pred C----CcEEEEEcCC-CceEEeeeCCCCCCCCCCCCCeeee--eCCCEEEEE-eCCcEEEEEEeeC
Q 003625 199 D----AGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVW--QDDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 199 d----~~v~iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~--~~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
| +.|+|||+++ +.++..+...... .+....| .++.++++| .|+.|++|++..+
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~-----~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNAS-----APLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCc-----cceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 4 3799999995 5556554332211 0111123 257788888 8999999999754
No 44
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.1e-18 Score=187.52 Aligned_cols=379 Identities=16% Similarity=0.144 Sum_probs=290.3
Q ss_pred EeCChhhHHHHHHhcccHHHHHHHHHhcCCCchhH----------------------hHHHHHHHHHHhCcccHHHHHhH
Q 003625 392 KPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELL----------------------DEVGSRYLDHLIVERKYAEAASL 449 (807)
Q Consensus 392 ~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~----------------------~~i~~~~~~~l~~~~~~~~A~~~ 449 (807)
.-.|..|.....++++.||||+.+.+.+......+ ..|+.+-+...++++...+|++-
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence 34555666678899999999999998766433221 34555555556677777778776
Q ss_pred hhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHH-HHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHH
Q 003625 450 CPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDT-AYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVI 528 (807)
Q Consensus 450 ~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~~l~~~-~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 528 (807)
+.+ +.+++.+.+||....+.+..+.|.+||.+.+....+. +-+.++-.|.+.+ ...++.++|.- ++.-++..+.
T Consensus 1127 yik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~-rl~elE~fi~g--pN~A~i~~vG 1201 (1666)
T KOG0985|consen 1127 YIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTN-RLTELEEFIAG--PNVANIQQVG 1201 (1666)
T ss_pred HHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhc-hHHHHHHHhcC--CCchhHHHHh
Confidence 543 4568999999999999999999999999976655544 3344444555543 45667777755 5666656665
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcc-hhhHhhhcc---chHHHHHHHHHHHhcChhH--HH
Q 003625 529 SAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHN---LHDAIREKVVQLMLLDCKR--AV 602 (807)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~---~~~~~~~~~~~l~~~~~~~--~~ 602 (807)
+.|=+.. .|+++..+|....+|.+....++.+++.. +.+..++.+ .|+.|...|.+--+....+ ++
T Consensus 1202 drcf~~~--------~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1202 DRCFEEK--------MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred HHHhhhh--------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCc
Confidence 5554444 89999999999999999999999999977 788877776 7988887776544444333 45
Q ss_pred HHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhH---HHHHHHHHHHhchHHHHHHhhc-CCCC
Q 003625 603 SLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDF---HDMQVELYADYDLKMLLPFLRS-SQHY 678 (807)
Q Consensus 603 ~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~---~~~l~~ly~~~~~~kl~~fL~~-~~~y 678 (807)
.|++.-. ..+.++..+++- ..+ .-|-.|++......+.+ .+.|.-||.+|.|+|++.+|+- .+.-
T Consensus 1274 ~iivhad---eLeeli~~Yq~r------GyF--eElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1274 NIIVHAD---ELEELIEYYQDR------GYF--EELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred eEEEehH---hHHHHHHHHHhc------CcH--HHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 5555432 247888888852 222 34445555555556654 5566667999999999999999 6789
Q ss_pred CHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHH---hCCHHHHHHHHhhcCChhHHHHHHHHhcC-CchHHHHHH
Q 003625 679 TLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINK---LGDIEEAVEFVNMQHDDELWEELIKQCLN-KPEMVGVLL 754 (807)
Q Consensus 679 ~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~---l~d~~~A~~~~~~~~~~~lw~~ll~~~~~-~~~~~~~lL 754 (807)
++.++++.|++..+|.|.||||.+...|+.|.-.+|++ .-+...-++...++.+-+||+..+.+|++ +|..+.+||
T Consensus 1343 NipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~~~P~llnDlL 1422 (1666)
T KOG0985|consen 1343 NIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLDFHPLLLNDLL 1422 (1666)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHHH
Confidence 99999999999999999999999999999999999985 12333456777788899999999999995 788899999
Q ss_pred HhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHH
Q 003625 755 EHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTET 794 (807)
Q Consensus 755 ~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~ 794 (807)
...+..+|..+++..+...-.++.+|+||..+...+++-+
T Consensus 1423 ~vL~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~Nn~av 1462 (1666)
T KOG0985|consen 1423 TVLSPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSLNNKAV 1462 (1666)
T ss_pred HhcccccCchHHHHHHHhcCCCcccHHHHHHHHhcchHHH
Confidence 9999999999999999999999999999999998777654
No 45
>PTZ00420 coronin; Provisional
Probab=99.80 E-value=2.3e-17 Score=183.17 Aligned_cols=190 Identities=15% Similarity=0.246 Sum_probs=139.8
Q ss_pred EEecCCEEEE------EecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCc-----
Q 003625 60 VAVAERMIAL------GTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE----- 126 (807)
Q Consensus 60 ~s~~~~~la~------gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~----- 126 (807)
++.+++++|. |+..|.|++|+.. ...+..+.+|.++|.+++|+|+ +..|+||+.||+|++||+.++.
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 4445555554 5667899999983 4457788999999999999997 7899999999999999997531
Q ss_pred ----eeEEecCC-ceEEEEeCCCCCCcCCC-EEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-
Q 003625 127 ----KMKFDYHR-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA- 197 (807)
Q Consensus 127 ----~~~~~~~~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~- 197 (807)
...+.+|. .|.+++|+|+ +. .+++|+.||+|++||.. .+.....+. +...|.+++|+ |.+++++
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~-----g~~iLaSgS~DgtIrIWDl~-tg~~~~~i~-~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPM-----NYYIMCSSGFDSFVNIWDIE-NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred cccceEEeecCCCcEEEEEECCC-----CCeEEEEEeCCCeEEEEECC-CCcEEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence 22467777 9999999998 44 56799999999999986 344333443 56789999998 7888877
Q ss_pred eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEE-EeCC----cEEEEEEeeCC
Q 003625 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVI-GWGT----YIKIASIKTNQ 257 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~-g~d~----~i~vw~~~~~~ 257 (807)
.|+.|+|||+++++.+..+..|.+.... ..+....| .++..+++ |.++ .|++||++...
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC
Confidence 6999999999999988877666532110 00111122 24455555 5553 69999998643
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2e-18 Score=160.29 Aligned_cols=188 Identities=15% Similarity=0.170 Sum_probs=161.5
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
.++.+|++.+++++|.+|++|+. .|..++++.+|...|..++.+.|...+++|+.|..|.+||+.+|++. ++.+|. .
T Consensus 24 ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq 103 (307)
T KOG0316|consen 24 RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ 103 (307)
T ss_pred EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce
Confidence 57789999999999999999999 68889999999999999999999999999999999999999998875 689998 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcCCCceE
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRI 213 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~~~~~~ 213 (807)
|+.|+|+.+ +..+++|+.|.++++||.+-.. .+++++......|.++...+..++++ .||++|.||++.|+..
T Consensus 104 VNtV~fNee-----sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 104 VNTVRFNEE-----SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred eeEEEecCc-----ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 999999998 8999999999999999987433 66788888888999999997666655 7999999999998876
Q ss_pred EeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 214 TFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 214 ~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
.-.-. .++++++++ ++...++| -|+++++.|-.+++..
T Consensus 179 sDy~g--------~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 179 SDYFG--------HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred hhhcC--------CcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 53222 247788886 55555555 8999999998887644
No 47
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=2.6e-17 Score=182.07 Aligned_cols=160 Identities=13% Similarity=0.262 Sum_probs=128.0
Q ss_pred EecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCc--------eeEEecCC-ceEEEEeCCCCCCcCCCEEEEec
Q 003625 88 EFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDE--------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGG 157 (807)
Q Consensus 88 ~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~--------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (807)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++. +..+.+|. .|.+++|+|+ +++.+++|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~----~~~iLaSgs 145 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS----AMNVLASAG 145 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC----CCCEEEEEe
Confidence 4678999999999999 88999999999999999997632 34577888 9999999998 247999999
Q ss_pred CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee
Q 003625 158 LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (807)
Q Consensus 158 ~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (807)
.||+|++|+.. .+.....+.+|.+.|.+++|+ |.+++++ .|+.|++||+++++.+..+..+... ....+.|
T Consensus 146 ~DgtVrIWDl~-tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-----~~~~~~w 219 (493)
T PTZ00421 146 ADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-----KSQRCLW 219 (493)
T ss_pred CCCEEEEEECC-CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-----cceEEEE
Confidence 99999999986 456667778899999999999 7777777 6999999999999888776655321 1234566
Q ss_pred e-CCC-EEEEEe----CCcEEEEEEeeCC
Q 003625 235 Q-DDT-LLVIGW----GTYIKIASIKTNQ 257 (807)
Q Consensus 235 ~-~~~-~l~~g~----d~~i~vw~~~~~~ 257 (807)
. ++. ++++|. |+.|++||++...
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 4 333 444442 6789999997644
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.79 E-value=1.2e-16 Score=166.70 Aligned_cols=187 Identities=19% Similarity=0.290 Sum_probs=155.4
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-ceeEEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~-~ 135 (807)
+++|+++++++|+.+|.|++|+.. +.....+..|...+..+.|+|+++++++++.||.+++|++.++ ....+..+. .
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 95 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY 95 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc
Confidence 577888999999999999999995 4456777889999999999999999999999999999999984 445677777 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN-DAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~-d~~v~iwd~~~~~~ 212 (807)
+.++.|+|+ ++.+++++.+|.+.+|+.. .+.....+..|.+.|.++.|+ +.+++++. ++.|++||+++++.
T Consensus 96 i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 96 VSSVAFSPD-----GRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred EEEEEEcCC-----CCEEEEecCCCeEEEEECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 999999998 7888888889999999886 455566667788999999999 57888886 99999999998887
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
...+..+. ..+.++.|+ ++..++++ .++.|++|+++.+.
T Consensus 170 ~~~~~~~~------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 170 VATLTGHT------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ceeEecCc------cccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 77665432 246788886 44466666 79999999997644
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=1.9e-18 Score=184.63 Aligned_cols=178 Identities=11% Similarity=0.052 Sum_probs=149.6
Q ss_pred CCEEEEEecCCeEEEEecCCCe------eE----EecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEec
Q 003625 64 ERMIALGTHAGTVHILDFLGNQ------VK----EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~~------~~----~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (807)
..+++++|.|+++++|++.... .. +..+|...|++++++|+...+||||.|.+.+||++....+. ++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 4599999999999999995411 11 23569999999999999999999999999999999975544 7899
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEE-EeCCcEEEEEcC
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAW-ANDAGVKVYDAA 208 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~-~~d~~v~iwd~~ 208 (807)
|+ .|+||.|+|. .+.++|++.|++|++|... +..+.+++.+|+..|..+.|- |..+++ ++||-+++|++.
T Consensus 504 H~RGvw~V~Fs~~-----dq~laT~SgD~TvKIW~is-~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 504 HTRGVWCVSFSKN-----DQLLATCSGDKTVKIWSIS-TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred CccceEEEEeccc-----cceeEeccCCceEEEEEec-cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99 9999999999 8999999999999999886 678899999999999999998 655554 589999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEE
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~ 253 (807)
++.|..++..|... +..++-+ ....+++| .||.|.+|.=
T Consensus 578 t~eC~~tlD~H~Dr------vWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 578 TNECEMTLDAHNDR------VWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred chhhhhhhhhccce------eEEEeecCccceeEecCCCeEEEEeec
Confidence 99999998877643 4444443 44567777 8999999953
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.79 E-value=1.2e-16 Score=164.51 Aligned_cols=192 Identities=20% Similarity=0.378 Sum_probs=140.9
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCC----CcEEEEeccC--Cc-
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDD----GSVVINSLFT--DE- 126 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~D----g~v~iwd~~~--~~- 126 (807)
+..++|.|.++|+|...|+|+|||..+.. ..+++.-.++|.+++|++++++|++.|+. |.+.+||..+ |+
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei 143 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEI 143 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCcccee
Confidence 34599999999999999999999996532 35667788899999999999998887764 4577888543 21
Q ss_pred -----------------------------------ee----EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 127 -----------------------------------KM----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 127 -----------------------------------~~----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
.. ++..|. -|+|+.|+|+ |..|++.+.||++.+||
T Consensus 144 ~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-----G~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 144 TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-----GSRFATAGSDGKIYIYD 218 (603)
T ss_pred eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-----CCeEEEecCCccEEEEc
Confidence 01 122344 8999999999 99999999999999998
Q ss_pred cccCCccceEee---cCCcCeEEEEEe--C-CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEE
Q 003625 167 KKWLGYRDQVLH---SGEGPVHVVKWR--T-SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLL 240 (807)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~V~~l~~~--~-~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l 240 (807)
.. ++.+...+. .|.|.|.++.|+ + +++.++.|.+++|||+.++++++++..... ..+..+ .+.|..+.++
T Consensus 219 Gk-tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v~dqqv-G~lWqkd~lI 294 (603)
T KOG0318|consen 219 GK-TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST--VEDQQV-GCLWQKDHLI 294 (603)
T ss_pred CC-CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc--hhceEE-EEEEeCCeEE
Confidence 76 677777777 799999999999 3 455555899999999999988877665432 111111 2345545555
Q ss_pred EEEeCCcEEEEEEeeCC
Q 003625 241 VIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 241 ~~g~d~~i~vw~~~~~~ 257 (807)
.++-+|+|.+++.....
T Consensus 295 tVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPS 311 (603)
T ss_pred EEEcCcEEEEecccCCC
Confidence 55555555555554443
No 51
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.78 E-value=1.1e-17 Score=170.12 Aligned_cols=184 Identities=19% Similarity=0.279 Sum_probs=156.3
Q ss_pred cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC-ceEEE
Q 003625 63 AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAI 139 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v 139 (807)
+..-+++++.||.|+++.+. .+++.++.+|.+.|+++.|+|.|..|+|+|.|++++||+..... +..+..|. .|..+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence 34578899999999999995 56688999999999999999999999999999999999987644 45688888 99999
Q ss_pred EeCCCCC----CcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 140 SLDPDYT----RKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 140 ~~~p~~~----~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
.|+|.-. .+.+..+++++.|++|++|+.. .+.+...+..|..+|.+++|+ |+++|++ -|+.|.||++++++.
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEcc-CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9998621 2235689999999999999986 688889999999999999999 8999999 599999999999998
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEe
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~ 254 (807)
.+...... .+..++|+ +|..+.++ .|+.+.+.|++
T Consensus 487 ~~s~~~~~-------~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 487 VKSYQGTG-------GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeecCCC-------eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 88754432 46789996 66666666 99999999885
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=3.8e-17 Score=195.55 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=150.2
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCcee-EEecCC
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (807)
+|++ +++.|++|+.||+|++||.. +..+..+.+|.+.|++++|+| ++.+|+||+.||+|++||+.++... .+..+.
T Consensus 539 ~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~ 618 (793)
T PLN00181 539 CWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA 618 (793)
T ss_pred EeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC
Confidence 4544 47899999999999999995 566788899999999999996 7899999999999999999986654 455555
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEEEcCCC--
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAAND-- 210 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iwd~~~~-- 210 (807)
.|.+++|++. ++..+++|+.||.|++|+.+........+.+|.+.|+++.|. +..++++ .|++|++||++.+
T Consensus 619 ~v~~v~~~~~----~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 619 NICCVQFPSE----SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CeEEEEEeCC----CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence 8999999654 389999999999999999863333456778899999999998 6666665 7999999999753
Q ss_pred ----ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 211 ----QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 211 ----~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
..+..+..+ ...+.++.|+ ++.++++| .|+.|++|+....
T Consensus 695 ~~~~~~l~~~~gh------~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 695 GINETPLHSFMGH------TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccCCcceEEEcCC------CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 334444333 3446677786 67788888 8999999997644
No 53
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=2e-17 Score=167.89 Aligned_cols=224 Identities=18% Similarity=0.242 Sum_probs=177.7
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR 134 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~ 134 (807)
..|++++|++||+|+.|..|.||+. +...++.+.+|.+.|.+++|-.....+.+++.|+.|++|+++. ..+.++-+|.
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq 286 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ 286 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence 4568889999999999999999999 4666888999999999999998888899999999999999987 4445677777
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCc
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQ 211 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~ 211 (807)
.|.++....- .+.+-+|+.|+++++|.. ......++.++.+.+-|++|- ..++.++.+|.|.+|++.+.+
T Consensus 287 d~v~~IdaL~r-----eR~vtVGgrDrT~rlwKi--~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 287 DGVLGIDALSR-----ERCVTVGGRDRTVRLWKI--PEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred cceeeechhcc-----cceEEeccccceeEEEec--cccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 8988876655 688888889999999987 345666778899999999998 466666689999999999999
Q ss_pred eEEeeeCCCCC------CCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeece
Q 003625 212 RITFIERPRGS------PRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSY 283 (807)
Q Consensus 212 ~~~~i~~~~~~------~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (807)
++.+...+.+. ..+..|+++++-. ...++++| ++|+|++|.+..+.. .+++...+....
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------~i~~l~~ls~~G 426 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------AINLLYSLSLVG 426 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------ccceeeeccccc
Confidence 88876554321 1122366666654 56788888 999999999987742 234555566677
Q ss_pred EEEeeeecC-CceEEEEe
Q 003625 284 YISGIAPFG-DCLVVLAY 300 (807)
Q Consensus 284 ~i~gi~~~~-~~l~vl~~ 300 (807)
.|.+|++.. +..++.+.
T Consensus 427 fVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 427 FVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEEEccCCCEEEEec
Confidence 888898777 55566664
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.78 E-value=4.1e-17 Score=161.78 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=169.4
Q ss_pred ccCCCceEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCC---CCEEEEEeCCCcEEEEeccCCce
Q 003625 51 LLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVD---GEYVGSCSDDGSVVINSLFTDEK 127 (807)
Q Consensus 51 ~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~---g~~l~s~~~Dg~v~iwd~~~~~~ 127 (807)
++..+=|+++...+++|.+|+.||.+++||..|+....+.+|.++|.+++|.-. ...++++|.|.++++|-.+.+..
T Consensus 102 ~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 102 FLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred ccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 333344666666789999999999999999999999999999999998888543 33599999999999998887543
Q ss_pred e-----EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc------------------------CCccceEe
Q 003625 128 M-----KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW------------------------LGYRDQVL 177 (807)
Q Consensus 128 ~-----~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~------------------------~~~~~~~~ 177 (807)
. .-.+|. +|-+|...++ +..|++|+.|.++.+|+... .+.+..++
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~s-----gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSS-----GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hhhHHhHhcccccceeEEEecCC-----CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 2 234788 9999999999 89999999999999997100 01334567
Q ss_pred ecCCcCeEEEEEe-CCEEEE-EeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEE
Q 003625 178 HSGEGPVHVVKWR-TSLIAW-ANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 178 ~~~~~~V~~l~~~-~~~la~-~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~ 253 (807)
.+|.++|.++.|+ ...+.+ +.|.+|+.||+.++.....+..+. ...++... ...++++| .|..+++||.
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc-------ceeEeecccccceeeecCCCCceeecCC
Confidence 8899999999999 344444 479999999999999888765554 23344443 55778888 8889999999
Q ss_pred eeCCCcCCCCccccCCcceEEEEEEeee-ceEEEeeeecC-CceEEEEee
Q 003625 254 KTNQSNVANGTYRHVGMNQVDIVASFQT-SYYISGIAPFG-DCLVVLAYI 301 (807)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~i~gi~~~~-~~l~vl~~~ 301 (807)
+++... -+..+|.. ..+|+++.|.. +.+.++...
T Consensus 330 R~~~gs--------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 330 RTGDGS--------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred CCCCCc--------------eeEEeeecchhhhhheecCCCCceEEEEEe
Confidence 987522 12222222 34788888877 666665543
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.3e-17 Score=180.82 Aligned_cols=191 Identities=14% Similarity=0.172 Sum_probs=153.0
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
+|+|.+.++++|+.|-.|++|+.+ .+++.++.+|-+-|..+.|++.-.+|+|+|+|.+|+||+..++.+. .+.+|. .
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY 137 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY 137 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE
Confidence 899999999999999999999996 4557889999999999999999999999999999999999997776 589999 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC------------------------C----ccceEeecCCcCeEEE
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL------------------------G----YRDQVLHSGEGPVHVV 187 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~------------------------~----~~~~~~~~~~~~V~~l 187 (807)
|.|.+|+|. ...+++++-|.+|++||..-. | -...++.+|+..|+.+
T Consensus 138 VMcAqFhpt-----EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 138 VMCAQFHPT-----EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred EEeeccCCc-----cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999998 789999999999999984210 1 1123456788899999
Q ss_pred EEeC--CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCC--CEEEEEeCCcEEEEEEeeCCC
Q 003625 188 KWRT--SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDD--TLLVIGWGTYIKIASIKTNQS 258 (807)
Q Consensus 188 ~~~~--~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~--~~l~~g~d~~i~vw~~~~~~~ 258 (807)
+|+| .+++++ .|+.|++|-+...+.-. +. ...+|-..+.++.|... ..+..|.|++|+|||+..+.+
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWE-vD---tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWE-VD---TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEecccccee-eh---hhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 9996 566666 78999999987443211 11 13344456788888753 333344999999999988763
No 56
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.78 E-value=1.5e-20 Score=175.04 Aligned_cols=137 Identities=37% Similarity=0.665 Sum_probs=124.4
Q ss_pred hcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhch-HHHHHHhhcCCCCCHHHHHH
Q 003625 607 QNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDL-KMLLPFLRSSQHYTLEKAYE 685 (807)
Q Consensus 607 ~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~-~kl~~fL~~~~~y~~~~al~ 685 (807)
...+..+++.||+.|.+. +.+..++.||+.++..++..++.+||.|+++|+++++ ++|++||+++++||+++|++
T Consensus 3 ~~~~~~~~~~vi~~~~~~----~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~ 78 (143)
T PF00637_consen 3 ESTDPLEISEVISAFEER----NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALR 78 (143)
T ss_dssp HHCTTSCSCCCHHHCTTT----T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHH
T ss_pred cCCCccCHHHHHHHHHhC----CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHH
Confidence 344678899999999864 4788899999999988887889999999999999998 99999999999999999999
Q ss_pred HHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHHhcCCch
Q 003625 686 ICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQCLNKPE 748 (807)
Q Consensus 686 ~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~~~~~~~ 748 (807)
+|++.+++++++|||+|+|+|++|+++ +.++++++.|++||.+.+++++|..+++++++.+.
T Consensus 79 ~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 79 LCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999998 88899999999999999999999999999997654
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.8e-17 Score=180.74 Aligned_cols=195 Identities=18% Similarity=0.207 Sum_probs=149.7
Q ss_pred CceEE--EEecCCEEEEEecCCeEEEEecCC------------------------------------C------------
Q 003625 55 DAASC--VAVAERMIALGTHAGTVHILDFLG------------------------------------N------------ 84 (807)
Q Consensus 55 ~~i~~--~s~~~~~la~gs~dg~I~i~d~~~------------------------------------~------------ 84 (807)
++|.| |+++|++||+|+.||.|+||.+.. .
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~ 347 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC 347 (712)
T ss_pred CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence 34555 889999999999999999997633 0
Q ss_pred -------------eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCC
Q 003625 85 -------------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (807)
Q Consensus 85 -------------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (807)
++..+.+|.+.|.+++||.+ .+|+|+|.|.+|++|++....|...-.|. -|+||+|+|. +.
T Consensus 348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv----DD 422 (712)
T KOG0283|consen 348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV----DD 422 (712)
T ss_pred ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc----CC
Confidence 02346789999999999965 58999999999999999998888765666 9999999997 58
Q ss_pred CEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEe--eeCCCCC-CC
Q 003625 151 RRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITF--IERPRGS-PR 224 (807)
Q Consensus 151 ~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~--i~~~~~~-~~ 224 (807)
++|++|+-||.++||... ..++.....-..-|++++|. |+..+.| -+|.+++|+....+.... |..+... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~--d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSIS--DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecC--cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 999999999999999874 34444444445789999999 7777777 699999999987765543 2222211 11
Q ss_pred CCCCCCeeeee---CCCEEEEEeCCcEEEEEEeeCC
Q 003625 225 PELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 225 ~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
+. .++.+.+. .+.+|+++.|..|+|+|.+...
T Consensus 501 ~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 501 GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 22 46666664 3347777799999999996554
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=2e-17 Score=168.09 Aligned_cols=195 Identities=16% Similarity=0.236 Sum_probs=151.0
Q ss_pred EEEEec-CCEEEEEecCCeEEEEecCCC--------eeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccC--C
Q 003625 58 SCVAVA-ERMIALGTHAGTVHILDFLGN--------QVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFT--D 125 (807)
Q Consensus 58 ~~~s~~-~~~la~gs~dg~I~i~d~~~~--------~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~--~ 125 (807)
.+|++. ...+++|+.|++|++||++.. ....+.+|.+.|..++|++- ...++++++|+.+.|||+++ .
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 467763 447889999999999999422 14567899999999999985 45789999999999999995 3
Q ss_pred cee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEE-eC
Q 003625 126 EKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-ND 199 (807)
Q Consensus 126 ~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~-~d 199 (807)
++. ...+|. +|+|++|+|. ++..||+|+.|++|.+||.+....+..++.+|+..|.++.|++ .++|++ .|
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~----~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPF----NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCcccccccCCceeEEEeCCC----CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 333 467777 9999999998 5789999999999999999977888999999999999999993 677777 79
Q ss_pred CcEEEEEcCCCceEEee----eCCCC----CCCCCCCCCeeeee-CCC-EEEEE-eCCcEEEEEEeeC
Q 003625 200 AGVKVYDAANDQRITFI----ERPRG----SPRPELLLPHLVWQ-DDT-LLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 200 ~~v~iwd~~~~~~~~~i----~~~~~----~~~~~~~~~~l~~~-~~~-~l~~g-~d~~i~vw~~~~~ 256 (807)
+.+.|||+..-.....- ..|.. ..+|...++.++|+ ... .+++. .|+.+.||++...
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 99999999742221110 01100 23466678889996 333 44444 8899999998743
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.76 E-value=1.3e-17 Score=165.22 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=151.8
Q ss_pred eEEEE--ecCCEEEEEecCCeEEEEecCC--------------------------CeeEEecCCCcceeEEEEcCCCCEE
Q 003625 57 ASCVA--VAERMIALGTHAGTVHILDFLG--------------------------NQVKEFPAHTAAVNDLSFDVDGEYV 108 (807)
Q Consensus 57 i~~~s--~~~~~la~gs~dg~I~i~d~~~--------------------------~~~~~~~~h~~~V~~l~~s~~g~~l 108 (807)
|-|++ ++|..+++|+.|.+|.||+... .++.++.+|+.+|.++.|++ ...+
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 55554 5899999999999999999210 11456789999999999998 6778
Q ss_pred EEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeE
Q 003625 109 GSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVH 185 (807)
Q Consensus 109 ~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~ 185 (807)
.++|.|.+|+.||+.++.+. .+....+++|+..+|. .+++++|+.|..+++||.+..+ -....+.+|.+.|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~-----~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL-----SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccc-----cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence 99999999999999997665 5666669999999998 8999999999999999987443 23456789999999
Q ss_pred EEEEeC---CEEEEE-eCCcEEEEEcCCCc-eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEE
Q 003625 186 VVKWRT---SLIAWA-NDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 186 ~l~~~~---~~la~~-~d~~v~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~ 253 (807)
++.|++ ..++++ .|+++++||+++.. ++..+.++. .-+-++.|+++..+++| .|++++|+.-
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~------DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN------DKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCC------ceEEEEeccCCceEEeccCcceEEEecc
Confidence 999993 344444 79999999999876 777776664 34778999999899998 8999999854
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.76 E-value=8.6e-18 Score=164.94 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=169.2
Q ss_pred CceeeeecC-CCCccccCCCc--e--EEEEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEE
Q 003625 37 PRLKYQRMG-GSLPSLLANDA--A--SCVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGS 110 (807)
Q Consensus 37 ~~l~~~~~~-~~~~~~~~~~~--i--~~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s 110 (807)
..++.|.+. +.+...+.++. + .++++--.++++++.|+.|+.||+.. +.++.+.+|-+.|.|++.+|.-+.|+|
T Consensus 173 rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t 252 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVT 252 (460)
T ss_pred ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEe
Confidence 445555543 33333333332 2 24666667999999999999999954 457899999999999999999999999
Q ss_pred EeCCCcEEEEeccCC-ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEE
Q 003625 111 CSDDGSVVINSLFTD-EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK 188 (807)
Q Consensus 111 ~~~Dg~v~iwd~~~~-~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~ 188 (807)
|+.|.+++|||+++. .+..+.+|+ +|..|.+.|. ...+++|+.|++|++||.+ .++...++..|...|.+++
T Consensus 253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-----dpqvit~S~D~tvrlWDl~-agkt~~tlt~hkksvral~ 326 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-----DPQVITGSHDSTVRLWDLR-AGKTMITLTHHKKSVRALC 326 (460)
T ss_pred cCCcceEEEeeecccceEEEecCCCCcceeEEeecC-----CCceEEecCCceEEEeeec-cCceeEeeecccceeeEEe
Confidence 999999999999994 566789999 9999999987 6789999999999999997 6788888899999999999
Q ss_pred EeC--CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 189 WRT--SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 189 ~~~--~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.++ ..+|+++...|+-|++..+..+..+..+. ..+.+++-+.+..+++| .+|.+.+||.+++.
T Consensus 327 lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~------~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 327 LHPKENLFASASPDNIKQWKLPEGEFLQNLSGHN------AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCchhhhhccCCccceeccCCccchhhcccccc------ceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 994 55667778889999999988877655443 34667777777788888 77789999998875
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=9.8e-17 Score=155.50 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=152.9
Q ss_pred ceEEEEecCCEEEEEecCCeEEEEecCCC-eeEEecCCCcceeEEEEcCCCC--EEEEEeCCCcEEEEeccCCce-eEEe
Q 003625 56 AASCVAVAERMIALGTHAGTVHILDFLGN-QVKEFPAHTAAVNDLSFDVDGE--YVGSCSDDGSVVINSLFTDEK-MKFD 131 (807)
Q Consensus 56 ~i~~~s~~~~~la~gs~dg~I~i~d~~~~-~~~~~~~h~~~V~~l~~s~~g~--~l~s~~~Dg~v~iwd~~~~~~-~~~~ 131 (807)
+++|++.+|.++|+|++|-+|+|||+..+ ....+-.|.+.|+++.|.+.-. +|++|++||.|.+|+...-.+ ..+.
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 36789999999999999999999999644 4677778999999999998775 899999999999999988544 4688
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcC
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~ 208 (807)
.|. .|+.++.||. +++.++.+.|+.+++|+.. .|+...++.-.. .-+.+.|+ |..++.+..+.|-||.+.
T Consensus 125 ~H~~~Vt~lsiHPS-----~KLALsVg~D~~lr~WNLV-~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~i~i~q~d 197 (362)
T KOG0294|consen 125 AHKGQVTDLSIHPS-----GKLALSVGGDQVLRTWNLV-RGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNKIDIYQLD 197 (362)
T ss_pred ccccccceeEecCC-----CceEEEEcCCceeeeehhh-cCccceeeccCC-cceeeEEcCCCCEEEEEeccEEEEEecc
Confidence 888 9999999999 8999999999999999875 344444333222 23448998 787888878899999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+......+..+. .+.++.|-++..|++| .++.|++||.....
T Consensus 198 ~A~v~~~i~~~~-------r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 198 NASVFREIENPK-------RILCATFLDGSELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred cHhHhhhhhccc-------cceeeeecCCceEEEecCCceEEEeccCCCc
Confidence 887777665552 2456788888888888 77889999988644
No 62
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.76 E-value=7.6e-16 Score=158.72 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=150.9
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEec---CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecC
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFP---AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYH 133 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~---~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~ 133 (807)
.++|+|+++|+.+.||+|.+||- +|..+..+. +|.+.|.+++|+||+..++|+|.|.+++|||+.+..+. ++...
T Consensus 197 RysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 197 RYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred EECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 48999999999999999999998 677777776 89999999999999999999999999999999997765 44333
Q ss_pred C----ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEE
Q 003625 134 R----PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 134 ~----~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd 206 (807)
. .-..+-|- + ..+++.+.+|++.+++.. +.....++.+|...|+++..+ +.++.++ .||.|.-|+
T Consensus 277 ~~v~dqqvG~lWq-k------d~lItVSl~G~in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 277 STVEDQQVGCLWQ-K------DHLITVSLSGTINYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWD 348 (603)
T ss_pred CchhceEEEEEEe-C------CeEEEEEcCcEEEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEe
Confidence 2 23344454 3 578999999999999876 456889999999999999999 6777777 699999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEEeCCcEEEEEEeeCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g~d~~i~vw~~~~~~ 257 (807)
..++..-+... ..|...+.++.-+. +.++.+|+|+++++.++..++
T Consensus 349 ~~~g~~~~~~g-----~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 349 SGSGTSDRLAG-----KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred cCCcccccccc-----ccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 99887654321 22344566666554 888889999999999987665
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.75 E-value=3.8e-16 Score=147.97 Aligned_cols=226 Identities=15% Similarity=0.189 Sum_probs=175.8
Q ss_pred eeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEE
Q 003625 40 KYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (807)
Q Consensus 40 ~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (807)
..++|+.++..+ ..+.+|.+|.+++.|.++.+|-. +|..+.++.+|+++|+|+..+-+.++++||+.|.+++
T Consensus 5 ~l~GHERplTqi-------KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQI-------KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceE-------EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 344566666555 67778999999999999999987 8999999999999999999999999999999999999
Q ss_pred EEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEEecC-----CCeEEEEEcccCC------ccceEeecCCcCeEE
Q 003625 119 INSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGL-----AGHLYLNSKKWLG------YRDQVLHSGEGPVHV 186 (807)
Q Consensus 119 iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~-----dg~v~l~~~~~~~------~~~~~~~~~~~~V~~ 186 (807)
+||+.+|++. .++...+|+.+.|+++ +++++.... .+.|.+++.+-.. .+...+..++..++.
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~-----gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFG-----GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccC-----CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 9999998876 5777779999999999 777776643 4568888765322 335566778889999
Q ss_pred EEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCC
Q 003625 187 VKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVA 261 (807)
Q Consensus 187 l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~ 261 (807)
.-|. +.+++++ .||.|.+||.+++.....- ...|...+..+.++ +..++++| .|.+-++||+.+-
T Consensus 153 a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s-----~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----- 222 (327)
T KOG0643|consen 153 ALWGPLGETIIAGHEDGSISIYDARTGKELVDS-----DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----- 222 (327)
T ss_pred eeecccCCEEEEecCCCcEEEEEcccCceeeec-----hhhhccccccccccCCcceEEecccCccceeeeccce-----
Confidence 9999 7888888 7999999999998654421 11223356777776 66778888 8999999998754
Q ss_pred CCccccCCcceEEEEEEeeeceEEEe--eeecCCceEEEE
Q 003625 262 NGTYRHVGMNQVDIVASFQTSYYISG--IAPFGDCLVVLA 299 (807)
Q Consensus 262 ~~~~~~~~~~~v~~~~~~~~~~~i~g--i~~~~~~l~vl~ 299 (807)
++.+.+..++.+.. |+|..|.+++-+
T Consensus 223 ------------~v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 223 ------------EVLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred ------------eeEEEeeecccccceecccccceEEecC
Confidence 46677777766655 444445554443
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=160.11 Aligned_cols=190 Identities=20% Similarity=0.285 Sum_probs=153.4
Q ss_pred EEEEecCCEEEEEecCCeEEEEecC-------------C------CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEE
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFL-------------G------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~-------------~------~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (807)
.+|+++|.++|+|+.|-.|+|+|+. | ..++++..|.+.|+++.|+|....|++|+.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 3699999999999999999999974 1 11577788999999999999999999999999999
Q ss_pred EEeccCCcee----EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccce---EeecCCcCeEEEEEe-
Q 003625 119 INSLFTDEKM----KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ---VLHSGEGPVHVVKWR- 190 (807)
Q Consensus 119 iwd~~~~~~~----~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~---~~~~~~~~V~~l~~~- 190 (807)
++|..+.... .+..-.+|.++.|+|. |.++++|..-.++++|+.... ++.. .-..|.+.|+++.++
T Consensus 198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPs-----GefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPS-----GEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred EEecccHHHHHHHHHhhccceeeeEeecCC-----CceEEEecCCCceeEEeccce-eEeeecCcccccccceeEEEecC
Confidence 9999873322 2333349999999999 999999999999999987522 1111 123588999999999
Q ss_pred -CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 191 -TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 191 -~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
|++.+++ .||.|++||--+++++.++....+ ...+|+..|. ++.+++++ .|..+++|.+.++.
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~----gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG----GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHHHHhhcC----CceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 7777777 699999999999999988765432 2358888886 66666655 89999999998876
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.7e-17 Score=175.30 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=155.5
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
+|+|...+|.++-.+|.|.+||.. +..+..|..|.++|..++|+|++..++|||+|-+|+||+..+.+|. ++.+|- .
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY 95 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY 95 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce
Confidence 788999999999999999999995 7778999999999999999999999999999999999999997775 788888 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEEe-CCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWAN-DAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~~-d~~v~iwd~~~~~~ 212 (807)
|..+.||+. -.++++++.|.+|++|+.. .+..+.++.+|+..|.|..|+| .++++++ |.+|||||+..-+.
T Consensus 96 VRt~~FHhe-----yPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 96 VRTVFFHHE-----YPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred eEEeeccCC-----CceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence 999999999 4899999999999999754 4678899999999999999995 6777774 99999999974221
Q ss_pred EEeeeC--------CC---------------CCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 213 ITFIER--------PR---------------GSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~--------~~---------------~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
...-+. .. -..+|+.-+.-.+|. .-.++++| .|..|++|.+...+
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 111000 00 012244444444554 34678888 56669999987554
No 66
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=6.9e-17 Score=151.08 Aligned_cols=189 Identities=17% Similarity=0.246 Sum_probs=147.4
Q ss_pred EEecCCEEEEEecCCeEEEEecC--C--CeeEEecCCCcceeEEEEcC--CCCEEEEEeCCCcEEEEeccCCce---eEE
Q 003625 60 VAVAERMIALGTHAGTVHILDFL--G--NQVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEK---MKF 130 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~--~--~~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~---~~~ 130 (807)
+..-|+.||++++||+|+||... + ..+.++.+|.++|+.++|.. -|..|||++.||+|.||.-.+++- ..+
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 44568999999999999999983 3 34788999999999999986 799999999999999999888643 345
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeEEEEEeC----------------
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWRT---------------- 191 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~~l~~~~---------------- 191 (807)
..|. .|++|+|.|+- -|-.+++++.||.|.+.+.+-.+ ...++...|+-.|++++|.+
T Consensus 99 ~~h~~SVNsV~waphe---ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHE---YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhcccceeecccccc---cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 6677 99999999972 25689999999999998765443 34556678999999999982
Q ss_pred C-EEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-----CCCEEEEE-eCCcEEEEEEee
Q 003625 192 S-LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-----DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 192 ~-~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-----~~~~l~~g-~d~~i~vw~~~~ 255 (807)
. ++.++.|+.|+||+..+++-.. ......|..++..++|. ....++++ .||++.||..+.
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~----e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKL----ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ceeeccCCccceeeeecCCcchhh----hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 2 4444489999999998873222 11134455677777775 34577777 899999998773
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.75 E-value=1.1e-16 Score=164.12 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=138.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeE-------------EecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEec
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVK-------------EFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSL 122 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~-------------~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~ 122 (807)
...+++.|..|++.+.....+++|.+|..+. ..++|...++|.+|+|.. ..++|++.||+++||++
T Consensus 219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEec
Confidence 3458888998888888899999999886632 236899999999999975 46899999999999999
Q ss_pred cCCc----eeE---EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc-cCCcc-ceEeecCCc--CeEEEEEe
Q 003625 123 FTDE----KMK---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-WLGYR-DQVLHSGEG--PVHVVKWR 190 (807)
Q Consensus 123 ~~~~----~~~---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~~~~~-~~~~~~~~~--~V~~l~~~ 190 (807)
.+.+ +.+ ..+.+ ++++++|+|+ +..||+|+.||.|.+|+.+ |..+. ..+-..|.. .|+||.|+
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd-----g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNRD-----GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCCC-----cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 8732 221 23445 9999999999 8999999999999999853 32222 334445765 89999999
Q ss_pred --CCEEEEE-eCCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEe-------CCcEEEEEEeeCC
Q 003625 191 --TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGW-------GTYIKIASIKTNQ 257 (807)
Q Consensus 191 --~~~la~~-~d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~-------d~~i~vw~~~~~~ 257 (807)
|++|++- .|+++++||++.. +++.....-.. ......++|+ +..++++|. .+.+.+|+..+-.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t----~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT----PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCc----cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 7877776 7999999999864 34433221110 1112345565 556677762 2457777765543
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=3e-16 Score=158.04 Aligned_cols=207 Identities=16% Similarity=0.239 Sum_probs=163.7
Q ss_pred CceeeeecCCCCccccCCCceEE----EEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEE
Q 003625 37 PRLKYQRMGGSLPSLLANDAASC----VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSC 111 (807)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~i~~----~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~ 111 (807)
+.+-+.+-.+.+..++.++...+ ++++...+++++.|..|+||... .........|.++|+.+..+|+|.||+++
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA 321 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA 321 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence 45556566666777777776433 45566788899999999999984 34456678899999999999999999999
Q ss_pred eCCCcEEEEeccCCceeEEecC---C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEE
Q 003625 112 SDDGSVVINSLFTDEKMKFDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVV 187 (807)
Q Consensus 112 ~~Dg~v~iwd~~~~~~~~~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l 187 (807)
+.||+....|++++.......+ . .+++.+|||+ |..|.+|..||.|++|+.. .+.....+.+|.++|..+
T Consensus 322 s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpD-----gLifgtgt~d~~vkiwdlk-s~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 322 SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPD-----GLIFGTGTPDGVVKIWDLK-SQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCC-----ceEEeccCCCceEEEEEcC-CccccccCCCCCCceeEE
Confidence 9999999999999877643222 2 7999999999 9999999999999999986 445677888999999999
Q ss_pred EEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEee
Q 003625 188 KWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKT 255 (807)
Q Consensus 188 ~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~ 255 (807)
+|+ |.+++++ .|+.|++||++.-+...++..+... .+.++.|. .|.+|+++ +..++||....
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-----~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k 461 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-----EVNSLSFDQSGTYLGIA-GSDLQVYICKK 461 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-----cceeEEEcCCCCeEEee-cceeEEEEEec
Confidence 999 8899988 6777999999987766666555422 25677785 66777776 55666666553
No 69
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.75 E-value=1.6e-16 Score=153.01 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=150.7
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCceeEEecCC-ce
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMKFDYHR-PM 136 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v 136 (807)
+..+++.|++++.|.+|+.||. .|+.++.+++|.+-|+++.-+.-|. .+.||+.||++++||+++....+....+ ++
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyql 177 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQL 177 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeE
Confidence 6679999999999999999999 6888999999999999887444444 5778999999999999987666544444 99
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCC----
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN---- 209 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~---- 209 (807)
+++.|... +..+.+|+-|+.|++|+.+ .+....++.+|..+|+++..+ |.++.+- .|+++++||++.
T Consensus 178 tAv~f~d~-----s~qv~sggIdn~ikvWd~r-~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 178 TAVGFKDT-----SDQVISGGIDNDIKVWDLR-KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred EEEEeccc-----ccceeeccccCceeeeccc-cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999988 8899999999999999987 456778899999999999998 6666665 799999999984
Q ss_pred CceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 210 DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+++..+..+.. +.+...-..+|+ ++..+..| .|..+++||...+.
T Consensus 252 ~R~v~if~g~~h--nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 252 QRCVKIFQGHIH--NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred CceEEEeecchh--hhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 344555554421 112223346776 55566666 88899999988765
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.4e-16 Score=169.82 Aligned_cols=187 Identities=18% Similarity=0.313 Sum_probs=156.5
Q ss_pred CceEE--EEecCCEEEEEecCCeEEEEec-CCCeeEEecC-CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-e-
Q 003625 55 DAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-M- 128 (807)
Q Consensus 55 ~~i~~--~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~- 128 (807)
+.+++ |+++|.+||+|+.+|.|.|||. ..+.+..+.+ |...|.+++|+ +..+.+|+.||.|..+|++.... .
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh
Confidence 44655 6678999999999999999999 4555778888 99999999999 77899999999999999998442 2
Q ss_pred EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE---eCCc
Q 003625 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA---NDAG 201 (807)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~---~d~~ 201 (807)
.+.+|+ .|..++|+++ ++++++|+.|+.+.+|+.. .......+..|.+.|.+++|+ +.+||+| .|+.
T Consensus 296 ~~~~H~qeVCgLkws~d-----~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPD-----GNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhcccceeeeeEECCC-----CCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 478888 9999999999 8999999999999999884 456778889999999999999 5788876 4999
Q ss_pred EEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEE---eCCcEEEEEEeeC
Q 003625 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG---WGTYIKIASIKTN 256 (807)
Q Consensus 202 v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g---~d~~i~vw~~~~~ 256 (807)
|++||+.++..+..+... ..+|++.|+. ..-++++ .++.|.||+..+-
T Consensus 370 i~fwn~~~g~~i~~vdtg-------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG-------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred EEEEEcCCCcEecccccC-------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 999999999988875543 3699999973 3344444 6778999998663
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.6e-17 Score=178.30 Aligned_cols=212 Identities=20% Similarity=0.292 Sum_probs=163.1
Q ss_pred cCCEEEEEecCCeEEEEecCC----CeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCcee-EEecCC-c
Q 003625 63 AERMIALGTHAGTVHILDFLG----NQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~----~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
..++||+++..|.|.+||++. ..+..+..|...|+++.|++. ..+|+|||.||+|++||++..+.. ++.+.. .
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 577999999999999999953 235678899999999999975 457899999999999999986544 455555 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
|+.|+|+|.+ +..|+++...|.+.+||.+........+..|.|+|.|+.|+ +.+||+| .|+.|+|||+.+++.
T Consensus 179 iRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 179 IRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hhceeeccCC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 9999999994 89999999999999999987777778888999999999999 5789988 699999999986543
Q ss_pred E--EeeeCCCCCCCCCCCCCeeeee--CCCEEEEE---eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeee-ceE
Q 003625 213 I--TFIERPRGSPRPELLLPHLVWQ--DDTLLVIG---WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQT-SYY 284 (807)
Q Consensus 213 ~--~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 284 (807)
. .++.. ...+.++.|- ....|+++ .|-.|+|||++..--+ ..+|.. +-.
T Consensus 255 ~~~~tInT-------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----------------~~t~~eH~~~ 311 (839)
T KOG0269|consen 255 KPKHTINT-------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----------------YATFLEHTDS 311 (839)
T ss_pred cceeEEee-------cceeeeeeeccCccchhhhhhccccceEEEEeecccccc----------------ceeeeccCcc
Confidence 2 23322 3357788995 33566665 5667999999864321 112211 345
Q ss_pred EEeeeecC-CceEEEEee
Q 003625 285 ISGIAPFG-DCLVVLAYI 301 (807)
Q Consensus 285 i~gi~~~~-~~l~vl~~~ 301 (807)
+.|++|-. |...++...
T Consensus 312 vt~i~W~~~d~~~l~s~s 329 (839)
T KOG0269|consen 312 VTGIAWDSGDRINLWSCS 329 (839)
T ss_pred ccceeccCCCceeeEeec
Confidence 56777766 555555544
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.74 E-value=7.1e-16 Score=184.60 Aligned_cols=185 Identities=14% Similarity=0.169 Sum_probs=145.0
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCC---------eeEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCce-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGN---------QVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEK- 127 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~---------~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~- 127 (807)
+|+++|+++|+|+.||.|+||+.... ....+. +...|.+++|++ ++.+|++|+.||+|++||+.++..
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~ 568 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV 568 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 47788999999999999999997421 122233 346799999987 478999999999999999988654
Q ss_pred eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcE
Q 003625 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGV 202 (807)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v 202 (807)
..+..|. .|++++|+|. ++..+++|+.||.|++|+.. .+.....+.. ...|.++.|. |.+++++ .|+.|
T Consensus 569 ~~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSIN-QGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred EEecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECC-CCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 4577888 9999999974 27899999999999999986 4445555554 3679999995 6777777 79999
Q ss_pred EEEEcCCCc-eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeC
Q 003625 203 KVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 203 ~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
++||+++.. ....+.. |...+.++.|.++..+++| .|++|++||+..+
T Consensus 643 ~iwD~~~~~~~~~~~~~------h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIG------HSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEEECCCCCccceEecC------CCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 999998764 3444333 3345778889888888887 8999999998754
No 73
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=2.3e-16 Score=146.68 Aligned_cols=219 Identities=16% Similarity=0.262 Sum_probs=165.4
Q ss_pred CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCC
Q 003625 83 GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG 160 (807)
Q Consensus 83 ~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg 160 (807)
+...+.+..|.++|..+.|+-+|++.++|+.|.+|++|+...+.+. ++.+|. .|..++.+.+ +..|++|+.|.
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-----nskf~s~GgDk 81 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-----NSKFASCGGDK 81 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----ccccccCCCCc
Confidence 3345677889999999999999999999999999999999887655 688888 9999999988 78999999999
Q ss_pred eEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc--eEEeeeCCCCCCCCCCCCCeeeee
Q 003625 161 HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ--RITFIERPRGSPRPELLLPHLVWQ 235 (807)
Q Consensus 161 ~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~ 235 (807)
.+.+||.. .|+..+.+.+|.+.|+.++|+ ...++++ -|.++++||.++.. +++.+..... .+.++..
T Consensus 82 ~v~vwDV~-TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D------~V~Si~v- 153 (307)
T KOG0316|consen 82 AVQVWDVN-TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD------GVSSIDV- 153 (307)
T ss_pred eEEEEEcc-cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC------ceeEEEe-
Confidence 99999997 788899999999999999999 5777777 59999999998753 4444433221 2344443
Q ss_pred CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCC
Q 003625 236 DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSST 314 (807)
Q Consensus 236 ~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~ 314 (807)
.+..++.| .||+++.||++.+....-.- ...|.+++.-++.-.+|+.+
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~------------------g~pit~vs~s~d~nc~La~~------------- 202 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYF------------------GHPITSVSFSKDGNCSLASS------------- 202 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhc------------------CCcceeEEecCCCCEEEEee-------------
Confidence 45566666 99999999999886332111 12234444444333333332
Q ss_pred CCcccCCCCCCeEEEeccCCcccccCccccCccccccccCccccc
Q 003625 315 LPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAH 359 (807)
Q Consensus 315 ~~~~~~~~~~p~l~iv~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 359 (807)
....+|++|..+.++ +..|.+.....|.+.+
T Consensus 203 --------l~stlrLlDk~tGkl------L~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 203 --------LDSTLRLLDKETGKL------LKSYKGHKNMEYKLDC 233 (307)
T ss_pred --------ccceeeecccchhHH------HHHhcccccceeeeee
Confidence 146799999887766 5557877777787765
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.2e-16 Score=154.20 Aligned_cols=189 Identities=14% Similarity=0.239 Sum_probs=155.0
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--CceeEEecCC-c
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-P 135 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~ 135 (807)
|-..|+.+++|++|++..+||+ .|..+..+.+|....+.++-+|..+.+++.+.|.+.++||++. ..+..|++|. .
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 7778999999999999999999 5777899999999999999999999999999999999999985 3455789999 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-C-CEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-T-SLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~-~~la~~-~d~~v~iwd~~~~~~ 212 (807)
|+++.|..+ ..+++|+.|.+|++|+.+.+.....++.. ..+++.++.+ | .+++.- .+..|++||+...+
T Consensus 360 VTS~vF~~d------d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R- 431 (481)
T KOG0300|consen 360 VTSVVFNTD------DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR- 431 (481)
T ss_pred eeEEEEecC------CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-
Confidence 999999887 67999999999999999866666665554 5678888888 4 577777 56789999997544
Q ss_pred EEeeeCCCCCCCCCCCCCeeeeeCC----CEEEEEeCCcEEEEEEeeCC
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQDD----TLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~~~----~~l~~g~d~~i~vw~~~~~~ 257 (807)
+..+++.. ..+|...++|.+|.+. .++.+|.|..+.=|++....
T Consensus 432 laRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 432 LARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 33444332 4567778999999743 46677799999999987543
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=2.3e-16 Score=157.72 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=147.9
Q ss_pred EEEEecCCEEEEEecCCeEEEEecC--CC--eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Ee-
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFL--GN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FD- 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~--~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~- 131 (807)
..|+++|+++|+++.|.+..+|.+. +. ..+++.+|..+|.-+.||||.+++++|+.|..+.+||+.+|.+.. +.
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 4689999999999999999999982 22 367888999999999999999999999999999999999988775 33
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCC-cCeEEEEEe--CCEEEE-EeCCcEEEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE-GPVHVVKWR--TSLIAW-ANDAGVKVYD 206 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~-~~V~~l~~~--~~~la~-~~d~~v~iwd 206 (807)
++. .+.+++|.|+ |..|++|+.|+++..|+.. |.......+.+ ..|.+++.. |..+.. +.|..|++|+
T Consensus 310 ~~~~S~~sc~W~pD-----g~~~V~Gs~dr~i~~wdlD--gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~ 382 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPD-----GFRFVTGSPDRTIIMWDLD--GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYN 382 (519)
T ss_pred CcCCCcceeEEccC-----CceeEecCCCCcEEEecCC--cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeec
Confidence 234 8999999999 8999999999999999863 44433333322 458888877 665554 4899999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
..+......+..+. .+.+++.+ +++++++. .+..+++||+..+..
T Consensus 383 ~e~~~dr~lise~~-------~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 383 REARVDRGLISEEQ-------PITSFSISKDGKLALVNLQDQEIHLWDLEENKL 429 (519)
T ss_pred hhhhhhhccccccC-------ceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence 98776665444332 35566665 66777777 899999999986553
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.73 E-value=4.1e-16 Score=172.77 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=156.5
Q ss_pred cCCCc--eEEEEec--CCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc
Q 003625 52 LANDA--ASCVAVA--ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (807)
Q Consensus 52 ~~~~~--i~~~s~~--~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (807)
+.+|. +.++... +..+++|+.|.++++||. +|.+...+.+|.+.|.++... +..+++|+.|.+|++|++.++.
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc
Confidence 44444 5555444 889999999999999999 688899999999999988765 5578889999999999999987
Q ss_pred eeE-EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC-CEEEEE-eCCcE
Q 003625 127 KMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWA-NDAGV 202 (807)
Q Consensus 127 ~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~-~~la~~-~d~~v 202 (807)
+.. +.+|. +|+++..+ +..+++|+.||+|.+|+.. .+.....+.+|.+.|.++.+.+ ..+.++ .|++|
T Consensus 323 ~l~l~~~h~~~V~~v~~~-------~~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD-------EPLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI 394 (537)
T ss_pred eEEEeccccccEEEEEec-------CCEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence 765 55588 99999997 3699999999999999988 7888999999999999999987 777666 79999
Q ss_pred EEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 203 KVYDAAND-QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 203 ~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
++||+++. +++.++..+.. .+..+.. .+..|+++ .|++|++||...++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~------~v~~l~~-~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTS------LVSSLLL-RDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred EeecCCchhhhhhhhcCCcc------ccccccc-ccceeEeccccccEEEeecccCce
Confidence 99999999 88887666643 2344433 45566666 999999999988763
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=6.5e-17 Score=176.45 Aligned_cols=192 Identities=16% Similarity=0.193 Sum_probs=145.3
Q ss_pred eEEEEe-cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCceeEEecCC
Q 003625 57 ASCVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (807)
Q Consensus 57 i~~~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (807)
|..+++ ..++|.+++.|.+|++|++..+.....-.|.+-|+|++|+| |.+|++||+-||+|+||++...++..+..-+
T Consensus 372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~ 451 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR 451 (712)
T ss_pred heecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh
Confidence 445454 35688899999999999996544334447999999999999 6789999999999999999988887765444
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEeecC------CcCeEEEEEe----CCEEEEEeCCcE
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSG------EGPVHVVKWR----TSLIAWANDAGV 202 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~~~------~~~V~~l~~~----~~~la~~~d~~v 202 (807)
-|++++|.|+ |+..++|+.+|.+++|+..-.. .....+..+ ...|+++.|. ..++++++|..|
T Consensus 452 ~lITAvcy~Pd-----Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 452 DLITAVCYSPD-----GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred hhheeEEeccC-----CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCce
Confidence 9999999999 9999999999999999764211 111111111 2379999998 248888899999
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
||||.+....+..++....... .....| .+|..+++| .|..|++|+.....
T Consensus 527 RI~d~~~~~lv~KfKG~~n~~S----Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 527 RIYDGRDKDLVHKFKGFRNTSS----QISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEEeccchhhhhhhcccccCCc----ceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 9999988777776665432211 123344 388999998 77789999986543
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.73 E-value=2.4e-15 Score=156.88 Aligned_cols=187 Identities=18% Similarity=0.275 Sum_probs=152.4
Q ss_pred EEEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~ 135 (807)
.++++++.+++|+.+|.|++|+... .....+..|...|.++.|++++.++++++.||.+++||+.++.. ..+..+. +
T Consensus 58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 5777888999999999999999964 56778888999999999999999999998899999999997554 4566666 8
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
+.+++|+|+ +.++++++.+|.+.+|+.. .+.....+..|.+.|.++.|+ +..++++ .++.+++||+++++.
T Consensus 138 i~~~~~~~~-----~~~l~~~~~~~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 138 VNSVAFSPD-----GTFVASSSQDGTIKLWDLR-TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEEcCc-----CCEEEEEcCCCcEEEEEcc-ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 999999998 7888888889999999986 455666777888899999999 4355555 799999999998877
Q ss_pred EEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEEe-CCcEEEEEEeeCC
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQD-DTLLVIGW-GTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g~-d~~i~vw~~~~~~ 257 (807)
...+..+. ..+.++.|++ +.+++++. ++.|++|++.++.
T Consensus 212 ~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 212 LGTLRGHE------NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ecchhhcC------CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 76653332 2467788875 66666665 9999999987644
No 79
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=6.7e-14 Score=147.67 Aligned_cols=183 Identities=18% Similarity=0.343 Sum_probs=140.1
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceE
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMK 137 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~ 137 (807)
|+.|+|..++.+.. ..+.+||. +|...+++++|.+.|++++|+.||+.++||+.|..|.+|+..-.-+.++.+...|.
T Consensus 19 afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ 97 (1081)
T KOG1538|consen 19 AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ 97 (1081)
T ss_pred EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence 89999998866644 46889999 68889999999999999999999999999999999999997765556665555999
Q ss_pred EEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEE
Q 003625 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRIT 214 (807)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~ 214 (807)
|+.|+|- +..+++++-+ ..-+|... .+...-+.....|.+++|. |++++.| .+|+|.|-+- +++...
T Consensus 98 CMsFNP~-----~h~LasCsLs-dFglWS~~---qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 98 CMSFNPI-----THQLASCSLS-DFGLWSPE---QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred EeecCch-----HHHhhhcchh-hccccChh---hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 9999998 7888888765 45556442 1111112234568889998 8999999 7999988864 455556
Q ss_pred eeeCCCCCCCCCCCCCeeeee------CCCEEEEE-eCCcEEEEEEee
Q 003625 215 FIERPRGSPRPELLLPHLVWQ------DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~~------~~~~l~~g-~d~~i~vw~~~~ 255 (807)
.+++|++. ...+.+++|+ ....+++. |+.++.++.+..
T Consensus 168 ~I~Rpgg~---Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 168 KIERPGGS---NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred EEeCCCCC---CCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 67777543 3346677785 23567776 999999998864
No 80
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=156.87 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=142.4
Q ss_pred cCCEEEEEecCCeEEEEecCC-----------------CeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccC
Q 003625 63 AERMIALGTHAGTVHILDFLG-----------------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT 124 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~-----------------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~ 124 (807)
+..+.|+=+..|.|+||++.. +++.++.+|.+.=+.++|||-. ..++||.--+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 444666667889999999731 2256778898888999999932 2377888888999999887
Q ss_pred Cce----eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCcc-ceEeecCCcCeEEEEEe--CCEEEE
Q 003625 125 DEK----MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR-DQVLHSGEGPVHVVKWR--TSLIAW 196 (807)
Q Consensus 125 ~~~----~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~-~~~~~~~~~~V~~l~~~--~~~la~ 196 (807)
+.- ..+.+|. .|-.++|+|. ....|++|+.||+|+|||.+...++ ....+.|.+.|+.|.|+ -.+||+
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSpt----E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPT----EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred CceeecCccccccccchhhhccCCc----cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence 653 2456677 9999999998 4789999999999999999843233 33347799999999999 247888
Q ss_pred E-eCCcEEEEEcCC---CceEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEEeCCcEEEEEEeeCC
Q 003625 197 A-NDAGVKVYDAAN---DQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 197 ~-~d~~v~iwd~~~---~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
| .||+++|||+++ ++++..++.|. ..++++.|+ ++.+.++|.|+.|.+||+....
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk------~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHK------APITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEecc------CCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 8 689999999985 45666766665 358899997 4445555599999999998654
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.72 E-value=4e-17 Score=166.70 Aligned_cols=197 Identities=11% Similarity=0.151 Sum_probs=149.3
Q ss_pred cCCCCccccCCCc----eEEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcE
Q 003625 44 MGGSLPSLLANDA----ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSV 117 (807)
Q Consensus 44 ~~~~~~~~~~~~~----i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v 117 (807)
..+.+...|.+|. ..+|+.+|..+.+++.|+.|++||.. |..+..+. -...++|+.|+|++ +.+++|+.|+.|
T Consensus 246 ~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 246 DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 3344555555554 34688899999999999999999995 65555553 33468999999999 789999999999
Q ss_pred EEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC-------------------------
Q 003625 118 VINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL------------------------- 170 (807)
Q Consensus 118 ~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~------------------------- 170 (807)
+.||++++++. .+..|- +|..+.|-|+ ++.|++.+.|+++++|+.+..
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~-----g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDE-----GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccC-----CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 99999998876 466666 9999999999 899999999999999962100
Q ss_pred --------------------CccceEeecCC--cCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCC
Q 003625 171 --------------------GYRDQVLHSGE--GPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRP 225 (807)
Q Consensus 171 --------------------~~~~~~~~~~~--~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~ 225 (807)
..+.+.+.+|. |.-+.+.|+ |.+|++| +||.+.+||.++.+.+..++.+..
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~---- 475 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ---- 475 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc----
Confidence 01122223332 455677888 7899988 799999999999888888766642
Q ss_pred CCCCCeeeee--CCCEEEEE-eCCcEEEEE
Q 003625 226 ELLLPHLVWQ--DDTLLVIG-WGTYIKIAS 252 (807)
Q Consensus 226 ~~~~~~l~~~--~~~~l~~g-~d~~i~vw~ 252 (807)
.+..+.|. ....++++ |+|.|++|+
T Consensus 476 --~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 --PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --ceEEEEecCCCcceeEecccCceeEecC
Confidence 35678886 23445544 999999995
No 82
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.3e-16 Score=164.15 Aligned_cols=188 Identities=19% Similarity=0.178 Sum_probs=160.4
Q ss_pred EEEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~ 135 (807)
.++|...++.++-.+|.|.|||.+. ..++++.-...+|.+..|-+..+++++|++|+.|+||+..+ .++..+..|. .
T Consensus 20 d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy 99 (794)
T KOG0276|consen 20 DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY 99 (794)
T ss_pred ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccc
Confidence 4778888999999999999999964 45788888888999999999999999999999999999999 5567899999 9
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEcCCCc
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~~~~~ 211 (807)
|+|++.||. ..++++++.|-.|++|+-...-...+++.+|+.-|.+++|+ ++.+|++ -|++|+||.+.+..
T Consensus 100 IR~iavHPt-----~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~ 174 (794)
T KOG0276|consen 100 IRSIAVHPT-----LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH 174 (794)
T ss_pred eeeeeecCC-----CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC
Confidence 999999999 78999999999999997542226778999999999999999 3455555 69999999999999
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+..+++.|... +.|+.+- +..+|++| .|.+|+|||..+..
T Consensus 175 ~nfTl~gHekG------VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 175 PNFTLEGHEKG------VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred CceeeeccccC------cceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 88888776543 6777774 44599999 67789999987654
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=9.5e-16 Score=156.07 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=148.0
Q ss_pred cCCEEEEEecCCeEEEEecCC---Ce--------eEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCC-c---
Q 003625 63 AERMIALGTHAGTVHILDFLG---NQ--------VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD-E--- 126 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~---~~--------~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~-~--- 126 (807)
+.+.+|+++..|.|+|||... .. -.++.+|.+.=++++|++... ++++|+.|++|++||+... .
T Consensus 136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK 215 (422)
T ss_pred CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence 677899999999999999832 11 126788988778899998643 6899999999999999762 1
Q ss_pred ----eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc-CCccceEeecCCcCeEEEEEe---CCEEEEE
Q 003625 127 ----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW-LGYRDQVLHSGEGPVHVVKWR---TSLIAWA 197 (807)
Q Consensus 127 ----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~-~~~~~~~~~~~~~~V~~l~~~---~~~la~~ 197 (807)
...+.+|. .|..|+|+|. ....|++++.||.+.|||.+. ..........|.++|.|++|+ +.++|++
T Consensus 216 ~~~p~~~~~~h~~~VeDV~~h~~----h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~ 291 (422)
T KOG0264|consen 216 VVDPKTIFSGHEDVVEDVAWHPL----HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG 291 (422)
T ss_pred cccceEEeecCCcceehhhcccc----chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence 23468888 9999999997 468999999999999999884 345567778899999999999 5788888
Q ss_pred -eCCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 198 -NDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 198 -~d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.|++|++||+++- +++..+..| ..-+.++.|+ ....|+++ .|+.+.|||+..-+
T Consensus 292 S~D~tV~LwDlRnL~~~lh~~e~H------~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 292 SADKTVALWDLRNLNKPLHTFEGH------EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred cCCCcEEEeechhcccCceeccCC------CcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 5999999999964 344454444 4457889997 45677777 99999999998644
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.71 E-value=4.6e-16 Score=174.12 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=153.0
Q ss_pred EEEecCCEEEEEe--cCCeEEEEecCCC-------------eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc
Q 003625 59 CVAVAERMIALGT--HAGTVHILDFLGN-------------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (807)
Q Consensus 59 ~~s~~~~~la~gs--~dg~I~i~d~~~~-------------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (807)
.++|+|..+|+|+ .||.++||+.+.- .+.+...|.+.|+|+.|+|||.+||+||+|+.|.||...
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred EecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 5788999999999 8999999987321 134556799999999999999999999999999999877
Q ss_pred C-------C------------ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC
Q 003625 124 T-------D------------EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP 183 (807)
Q Consensus 124 ~-------~------------~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~ 183 (807)
. + .+..+.+|. .|..++|+|+ +.++++++.|++|.+|+..-. ...+++.+|.+.
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-----~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-----DSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL 173 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-----ccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence 2 1 134567888 9999999999 899999999999999988744 888999999999
Q ss_pred eEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 184 VHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 184 V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
|.++.|+ |+++|+- .|++|+||.+......+.+..|-.......+...+.|+ +|++|+++
T Consensus 174 VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 174 VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 9999999 8999987 79999999988888888887776555556677889997 88888887
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.9e-14 Score=153.88 Aligned_cols=188 Identities=22% Similarity=0.299 Sum_probs=147.2
Q ss_pred hhHHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh-chHHHHHHhhcCC
Q 003625 598 CKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-DLKMLLPFLRSSQ 676 (807)
Q Consensus 598 ~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~-~~~kl~~fL~~~~ 676 (807)
.++|++-.++..+.++|..|+..|.+. +..+.|..|||.|++..- ...++.++|+..|++. +.+||..|++..+
T Consensus 384 f~~A~~qYI~tI~~le~s~Vi~kfLda----q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 384 FDEATDQYIETIGFLEPSEVIKKFLDA----QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHcccCChHHHHHHhcCH----HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 334444444555778899999999764 467889999999998776 5667888999999985 7899999999987
Q ss_pred ----CCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHHhc----CCch
Q 003625 677 ----HYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQCL----NKPE 748 (807)
Q Consensus 677 ----~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~~~----~~~~ 748 (807)
.+|++.|+++|++.++++++-+|-.|-++|+.+|+++++.+++|++|+.|....+-+++-..+.+|-. +.|+
T Consensus 459 ~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~ 538 (933)
T KOG2114|consen 459 KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPE 538 (933)
T ss_pred CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChH
Confidence 89999999999999999999999999999999999999999999999999999999999999888833 5666
Q ss_pred HHHH-HHHhhcCC--CCHHHHHhhCCCC--------CccccHHHHHHHHHhhh
Q 003625 749 MVGV-LLEHTVGN--LDPLYIVNMVPNG--------LEIPRLRDRLVKIITDY 790 (807)
Q Consensus 749 ~~~~-lL~~~~~~--i~~~~vl~~lp~~--------~~i~~~~~~l~~~l~~~ 790 (807)
...+ +++.+... .+--..+..+|+. .+...+..||..+.+-.
T Consensus 539 ~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s 591 (933)
T KOG2114|consen 539 ETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEIS 591 (933)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcC
Confidence 5444 44445333 2333555666622 24456777777655433
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-14 Score=133.12 Aligned_cols=199 Identities=15% Similarity=0.252 Sum_probs=147.2
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC-------CC------e---eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEE
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL-------GN------Q---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~-------~~------~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw 120 (807)
..+|+|.|.+.|+|++..+.+|.-.. +. + .+.-+.|.+.|.|.+|+|+|+.+++|+.|.+|++.
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l 116 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL 116 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence 34799999999999999999986431 11 0 23335689999999999999999999999999997
Q ss_pred eccCCc------eeEEecCC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEE-EEeC
Q 003625 121 SLFTDE------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVV-KWRT 191 (807)
Q Consensus 121 d~~~~~------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l-~~~~ 191 (807)
..+... -..+..|. .|..++|..+..+ ++..+++++ .|..|++-+.. .+.....+.+|.+-|.++ .|+|
T Consensus 117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s-~~~il~s~gagdc~iy~tdc~-~g~~~~a~sghtghilalyswn~ 194 (350)
T KOG0641|consen 117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES-GGAILASAGAGDCKIYITDCG-RGQGFHALSGHTGHILALYSWNG 194 (350)
T ss_pred ecccccccccCcceeeeecCCceeeeEEecCCCc-CceEEEecCCCcceEEEeecC-CCCcceeecCCcccEEEEEEecC
Confidence 665422 23566777 9999999655322 356666654 34456665654 467778889999999887 5889
Q ss_pred CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCC-CCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 192 SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR-PELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 192 ~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
-+++++ .|.+|++||++-..++.++.......+ ....+..++.. .|++|++| .|....+||++.+.
T Consensus 195 ~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 195 AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 999888 699999999999888887654321111 11234445543 78899999 88889999999776
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=5.9e-16 Score=149.29 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=135.6
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecC--CCee-EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFL--GNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~--~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (807)
+|+| ...+++.|++||+|++|+++ |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++.+..+..|.
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence 5788 56788899999999999994 3443 445669999999999999999999999999999999999999999998
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE-----------------------------------------------
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS----------------------------------------------- 166 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~----------------------------------------------- 166 (807)
+|.++.|-+... ...+++|+.|.+++.||
T Consensus 114 ~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 114 APVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred cceeEEEEecCCC---cceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence 999999987621 35899999999999997
Q ss_pred ------cccC-----------------------------C--ccceEeecCC---------cCeEEEEEe---CCEEEEE
Q 003625 167 ------KKWL-----------------------------G--YRDQVLHSGE---------GPVHVVKWR---TSLIAWA 197 (807)
Q Consensus 167 ------~~~~-----------------------------~--~~~~~~~~~~---------~~V~~l~~~---~~~la~~ 197 (807)
..|. + ....+++.|+ -+|++|+|+ |.++..|
T Consensus 191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG 270 (347)
T KOG0647|consen 191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG 270 (347)
T ss_pred hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec
Confidence 0000 0 1122333443 147788998 6777778
Q ss_pred eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
+||++.+||-..+..+...+. +...+++.+|+ +|.+++-+
T Consensus 271 sDGtf~FWDkdar~kLk~s~~------~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 271 SDGTFSFWDKDARTKLKTSET------HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEEecchhhhhhhccCc------CCCccceeEecCCCCEEEEE
Confidence 999999999988877766333 34457777775 66666554
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.70 E-value=8.3e-17 Score=150.82 Aligned_cols=186 Identities=17% Similarity=0.278 Sum_probs=157.8
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceE
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMK 137 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~ 137 (807)
+.|+|-+|++++.||.-.+-+- .|.-+.+|.+|.++|++.+.+.+...-++++.|-+-++||.-+|... .+....-|.
T Consensus 25 itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk 104 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVK 104 (334)
T ss_pred CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheee
Confidence 4568999999999998877666 46669999999999999999999999999999999999999886654 565555999
Q ss_pred EEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--C-CEEEEEeCCcEEEEEcCCCceEE
Q 003625 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDAANDQRIT 214 (807)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~-~~la~~~d~~v~iwd~~~~~~~~ 214 (807)
+++|+.+ ++.+++|+.+..+++++..-...+...+.+|.+.|..+-|+ . .++.++.|++||+||.+++..++
T Consensus 105 ~~af~~d-----s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 105 AVAFSQD-----SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred eEEeccc-----chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEE
Confidence 9999999 89999999999999998875567778889999999999999 3 45555689999999999999999
Q ss_pred eeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 215 FIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.+..+. .+.++..+ +|+++.++.++.|.+||.++-+
T Consensus 180 sL~~~s-------~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 180 SLEFNS-------PVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred EEecCC-------CCcceeeccCCCEEEEecCceeEEecccccc
Confidence 877664 35666664 8888888999999999987654
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.3e-15 Score=151.87 Aligned_cols=210 Identities=14% Similarity=0.139 Sum_probs=156.4
Q ss_pred CCceeeeecCCCCccccCCCceEE--EEecCCEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCCCC-EEE
Q 003625 36 EPRLKYQRMGGSLPSLLANDAASC--VAVAERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGE-YVG 109 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~i~~--~s~~~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~-~l~ 109 (807)
..++.+.++............|+| |+|....+.+|+.||+++||.++|+. ++++.--..+|.+.+|.|+|+ .++
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 345666666555444444455776 55567799999999999999998765 566666778999999999999 899
Q ss_pred EEeCCCcEEEEeccCCceeEE---ecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCe
Q 003625 110 SCSDDGSVVINSLFTDEKMKF---DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (807)
Q Consensus 110 s~~~Dg~v~iwd~~~~~~~~~---~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V 184 (807)
++|.....+.||+.+.++.++ .+.. .+.....+|+ ++++++.|..|.|.+.... ++.-+..+ .-+|.|
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-----~~fia~~G~~G~I~lLhak-T~eli~s~-KieG~v 347 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-----SNFIAIAGNNGHIHLLHAK-TKELITSF-KIEGVV 347 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCC-----CCeEEEcccCceEEeehhh-hhhhhhee-eeccEE
Confidence 999999999999999776654 3333 6788899999 8999999999999886442 22222222 246889
Q ss_pred EEEEEe--CC-EEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 185 HVVKWR--TS-LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 185 ~~l~~~--~~-~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
..++|+ |. +++++.+|.|.+||++...++..+...+.. ...+++.+ ++.++++| ..|.|.||+..+.-
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 999998 54 555668999999999999888876554422 22334433 78899999 77889999976544
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-15 Score=159.91 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=159.4
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCee-EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-ceeEEec-CC-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDY-HR- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~-~~- 134 (807)
.|+ ..+.+|+|.. -.|++|+.....+ .....+...|+++.|+++|.+|+.|..+|.|.|||.... .+..+.+ |.
T Consensus 184 dWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 184 DWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred hcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence 455 4567777764 4799999954443 333445889999999999999999999999999999874 4456666 66
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
.|.+++|.. ..+.+|+.+|.|..++.+.......++.+|...|++++|+ +.++|++ +|+.+.|||.....
T Consensus 262 rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 262 RVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred eeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 999999974 5899999999999999986655555688999999999999 7888888 89999999997777
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE---eCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEE
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG---WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYIS 286 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~ 286 (807)
+...+..|.. .+-.++|+ ...+||+| .|++|++|+..++.. .........||
T Consensus 335 p~~~~~~H~a------AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-----------------i~~vdtgsQVc 391 (484)
T KOG0305|consen 335 PKFTFTEHTA------AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-----------------IDSVDTGSQVC 391 (484)
T ss_pred ccEEEeccce------eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-----------------ecccccCCcee
Confidence 7777665543 46678886 67788888 688999999987652 22333446689
Q ss_pred eeeecC
Q 003625 287 GIAPFG 292 (807)
Q Consensus 287 gi~~~~ 292 (807)
+|.|..
T Consensus 392 sL~Wsk 397 (484)
T KOG0305|consen 392 SLIWSK 397 (484)
T ss_pred eEEEcC
Confidence 999988
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1.3e-15 Score=147.12 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=164.7
Q ss_pred CCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEec------CC--------------------------
Q 003625 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDF------LG-------------------------- 83 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~------~~-------------------------- 83 (807)
....+|.++.+.+..+ .|++.+.++++|+.|++-+||.. ..
T Consensus 181 ~CL~~Y~GH~GSVNsi-------kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~ 253 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSI-------KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSS 253 (481)
T ss_pred cceeeecccccceeeE-------EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccc
Confidence 4566777777777666 78889999999999999999961 10
Q ss_pred -----C----eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCE
Q 003625 84 -----N----QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRR 152 (807)
Q Consensus 84 -----~----~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~ 152 (807)
. ++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+.++++. .+.+|. ..+.++-+|. .++
T Consensus 254 ~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-----QrL 328 (481)
T KOG0300|consen 254 EKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-----QRL 328 (481)
T ss_pred cccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-----ceE
Confidence 0 13457889999999999999999999999999999999998876 578888 9999999999 899
Q ss_pred EEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCC
Q 003625 153 FVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAAND-QRITFIERPRGSPRPELLL 229 (807)
Q Consensus 153 l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~ 229 (807)
+++++.|.+.++||-+..-....++.+|...|+++.|. +.-++++ .|.+|++||+++. .++.++.... .+
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-------~~ 401 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-------PA 401 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC-------cc
Confidence 99999999999999875557788999999999999999 6555555 7999999999864 4555554432 35
Q ss_pred CeeeeeCCC-EEEEEeC-CcEEEEEEeeCCCc
Q 003625 230 PHLVWQDDT-LLVIGWG-TYIKIASIKTNQSN 259 (807)
Q Consensus 230 ~~l~~~~~~-~l~~g~d-~~i~vw~~~~~~~~ 259 (807)
..++.+.+. ++++-.| ..|++||+......
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 566666554 7777755 45999999876543
No 92
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.69 E-value=5.2e-15 Score=146.38 Aligned_cols=189 Identities=16% Similarity=0.207 Sum_probs=145.3
Q ss_pred CCceEE--EEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeE
Q 003625 54 NDAASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMK 129 (807)
Q Consensus 54 ~~~i~~--~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~ 129 (807)
+++|+| |+.+|.+||+|+-+|.|+||..+ +.....+...-+.|.=++|+|.+..|+.|+.||.+.+|.+.+ +.+..
T Consensus 106 KDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 106 KDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred CCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 345666 66689999999999999999995 444555554455666689999999999999999999999998 66778
Q ss_pred EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc----------------------------------------
Q 003625 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK---------------------------------------- 168 (807)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~---------------------------------------- 168 (807)
+.+|. ++++=.|.|+ |+.+++|..||+|++|+..
T Consensus 186 ~~Gh~~~ct~G~f~pd-----GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPD-----GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred ecCCCCCcccccccCC-----CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 89999 9999999999 9999999999999999600
Q ss_pred ----------------------------------------------------cC--CccceEeecCCcCeEEEEEeC-CE
Q 003625 169 ----------------------------------------------------WL--GYRDQVLHSGEGPVHVVKWRT-SL 193 (807)
Q Consensus 169 ----------------------------------------------------~~--~~~~~~~~~~~~~V~~l~~~~-~~ 193 (807)
|+ ..+.+....|+.+|+.+.|-+ .+
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~ 340 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDY 340 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcch
Confidence 00 012222334667788888884 44
Q ss_pred E-EEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEE
Q 003625 194 I-AWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 194 l-a~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~ 253 (807)
+ +++.+|.|+.||.++|+.......|.. .+..++.+ +.++++++ .|++.+||++
T Consensus 341 l~t~c~~g~v~~wDaRtG~l~~~y~GH~~------~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQLKFTYTGHQM------GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heeeccCceEEeeeccccceEEEEecCch------heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 4 445899999999999999988766653 35555554 55666666 7888888875
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.69 E-value=1.2e-15 Score=170.89 Aligned_cols=188 Identities=21% Similarity=0.269 Sum_probs=149.7
Q ss_pred EEEecCCEEEEEecCCeEEEEecCC--------C-----------eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLG--------N-----------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI 119 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~--------~-----------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (807)
-|+++|++||+|+.|+.|.||...+ . .+..+.+|.+.|.+++|+|++.+++++|.|++|.|
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEE
Confidence 3899999999999999999999861 1 24567899999999999999999999999999999
Q ss_pred EeccCCc-eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc-------------------------ccC--
Q 003625 120 NSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-------------------------KWL-- 170 (807)
Q Consensus 120 wd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-------------------------~~~-- 170 (807)
||..+.+ +..+.+|. .|..+.|+|- |++|++-+.|++|++|.. .|.
T Consensus 156 wn~~tF~~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EccccceeeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 9999954 44688888 9999999999 999999999999999951 111
Q ss_pred C------------------------ccceEeecCCcCeEEEEEeC-------C------------EEEEE-eCCcEEEEE
Q 003625 171 G------------------------YRDQVLHSGEGPVHVVKWRT-------S------------LIAWA-NDAGVKVYD 206 (807)
Q Consensus 171 ~------------------------~~~~~~~~~~~~V~~l~~~~-------~------------~la~~-~d~~v~iwd 206 (807)
| .....+-+|.+++.+++|++ . .+|+| .|+++.||.
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 0 11233457899999999992 1 56666 699999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeee-CCC-EEEEEeCCcEEEEEEeeC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DDT-LLVIGWGTYIKIASIKTN 256 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~-~l~~g~d~~i~vw~~~~~ 256 (807)
....+++..+..- ....+..++|+ +|. +++++-||+|.++.+...
T Consensus 311 T~~~RPl~vi~~l-----f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 311 TALPRPLFVIHNL-----FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred cCCCCchhhhhhh-----hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9877776654322 12347789997 554 455559999999998754
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=4e-15 Score=142.78 Aligned_cols=196 Identities=15% Similarity=0.217 Sum_probs=150.4
Q ss_pred cCCEEEEEecCCeEEEEecCCCe-------e---------EEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccC-
Q 003625 63 AERMIALGTHAGTVHILDFLGNQ-------V---------KEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFT- 124 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~-------~---------~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~- 124 (807)
.|+++++|+.||.|.+||++... + ..-.+|.-.|.++.|-| |...+.+++-|.+++|||..+
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 58899999999999999984211 1 11235778999999988 455788899999999999998
Q ss_pred CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEE-eCC
Q 003625 125 DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA-NDA 200 (807)
Q Consensus 125 ~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~-~d~ 200 (807)
+....++....|.+-+++|--. +..++++|..+-+|++.|.. .|....++.+|.+.|.++.|++ -+++++ .||
T Consensus 135 Q~a~~F~me~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg 211 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG 211 (397)
T ss_pred eeeEEeecCceeehhhcChhhh--cceEEEEecCCCcEEEEecc-CCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence 5555787777899999998521 13678889999999999986 6888899999999999999994 356666 599
Q ss_pred cEEEEEcCCC-ceEEeeeCCCC--------CCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCC
Q 003625 201 GVKVYDAAND-QRITFIERPRG--------SPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVA 261 (807)
Q Consensus 201 ~v~iwd~~~~-~~~~~i~~~~~--------~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~ 261 (807)
.|++||++.. .+...+..++. .+.|...+..++|+ ++..+++. .|+.+++|+...+.....
T Consensus 212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccc
Confidence 9999999864 55555555441 22344556788994 66666654 999999999988875543
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.2e-15 Score=154.46 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=144.4
Q ss_pred eEEEEe-cCCEEEEEecCCeEEEEecCCCeeE-EecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCC--ceeEEe
Q 003625 57 ASCVAV-AERMIALGTHAGTVHILDFLGNQVK-EFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTD--EKMKFD 131 (807)
Q Consensus 57 i~~~s~-~~~~la~gs~dg~I~i~d~~~~~~~-~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~--~~~~~~ 131 (807)
.+-|+| ++..+++|+.|+.+++||+++..++ .+.+|++.|.|.+|+|. ++.++|||.||+|++||.++. .+..++
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 456777 4668889999999999999877654 77899999999999986 457899999999999999874 444566
Q ss_pred cCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcC
Q 003625 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~ 208 (807)
+..||..|.+-|. |..|++++.+ .|++||..-.+........|...|+|+++. ++.+.++ -|+.|++||+.
T Consensus 195 hg~pVe~vl~lps-----gs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 195 HGCPVESVLALPS-----GSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred CCCceeeEEEcCC-----CCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 6669999999999 8899998865 899999863345555555699999999998 4555554 69999999998
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEE
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIA 251 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw 251 (807)
+.+.+..+.-+. .+-+++.+ +++.+++| .+|.+.+=
T Consensus 269 ~~Kvv~s~~~~~-------pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 269 NYKVVHSWKYPG-------PVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEeeeccc-------ceeeEEecCCCceEEEecccceeeee
Confidence 888888776654 24455554 67888999 78776554
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=168.29 Aligned_cols=188 Identities=21% Similarity=0.309 Sum_probs=161.2
Q ss_pred CceEEEEecCCEEEEEecCCeEEEEec-CCCeeEE-ecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEe
Q 003625 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKE-FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (807)
Q Consensus 55 ~~i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (807)
+.+.|..++++++++|+.+++|++|+. ++..+.. +.+|.+.|.++++...+..+++|+.|.++++||..++.+. .+.
T Consensus 209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~ 288 (537)
T KOG0274|consen 209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ 288 (537)
T ss_pred chhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec
Confidence 446777777889999999999999999 5666666 9999999999999988899999999999999999998887 578
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcCC
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~~ 209 (807)
+|. .|.++...+. .+++|+.|.+|++|+.. .+....++.+|.++|.++..++.+++++ .|++|++||+.+
T Consensus 289 gh~stv~~~~~~~~-------~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 289 GHTSSVRCLTIDPF-------LLVSGSRDNTVKVWDVT-NGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCCceEEEEEccCc-------eEeeccCCceEEEEecc-CcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhh
Confidence 888 9999988765 78889999999999986 6777888888999999999997777666 799999999999
Q ss_pred CceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeC
Q 003625 210 DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
++++..+..|. ..+.++.+.....+++| .|++|++||+.+.
T Consensus 361 ~~cl~sl~gH~------~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 361 GKCLKSLSGHT------GRVYSLIVDSENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ceeeeeecCCc------ceEEEEEecCcceEEeeeeccceEeecCCch
Confidence 99999876654 45777766543677777 8999999999987
No 97
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=2.1e-15 Score=152.76 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=141.8
Q ss_pred CCEEEEEecCCeEEEEecCCC----eeEE------------------ecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEE
Q 003625 64 ERMIALGTHAGTVHILDFLGN----QVKE------------------FPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVIN 120 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~----~~~~------------------~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iw 120 (807)
|+++|+|+.+..|.|||++-. +..+ -.+|+..|-+++|+.. .+.|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 789999999999999998411 0001 1358889989999875 4568999999999999
Q ss_pred eccCCceeE-EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---C-CEE
Q 003625 121 SLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T-SLI 194 (807)
Q Consensus 121 d~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~-~~l 194 (807)
|+.++++.. +..|. .|.+++|+|. .+..+++|+.||+|.+.|.+- .........-.+.|-.++|+ . .++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~----~p~~LLsGs~D~~V~l~D~R~-~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPY----EPSVLLSGSYDGTVALKDCRD-PSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCC----CceEEEeccccceEEeeeccC-ccccCceEEeccceEEEEecCCCceeEE
Confidence 999988874 56666 9999999998 578999999999999999873 22222233346789999999 2 455
Q ss_pred EEEeCCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 195 AWANDAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 195 a~~~d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
++..||+|+-+|+++. +++.++..|.. .+.+++.+ ...+++++ .+++|++|++....
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~------~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDD------EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccC------CcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 5558999999999964 77888777764 36667765 44566666 89999999998655
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=5.4e-16 Score=165.99 Aligned_cols=186 Identities=19% Similarity=0.289 Sum_probs=154.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-------C-c-
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-------D-E- 126 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-------~-~- 126 (807)
.++|.|.++++++|+..|.+.+||+ ....+.++++|.+.|++++.+||+..++|||.|.+|++||..- . +
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 3458899999999999999999999 4566778889999999999999999999999999999998531 0 0
Q ss_pred ----------------------------------------------eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCC
Q 003625 127 ----------------------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA 159 (807)
Q Consensus 127 ----------------------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (807)
-..+-+|. ||.|+..+|+ ++.++||+.|
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D-----SklivTgSAD 571 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD-----SKLIVTGSAD 571 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC-----cCeEEeccCC
Confidence 01234688 9999999999 8999999999
Q ss_pred CeEEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-e
Q 003625 160 GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-Q 235 (807)
Q Consensus 160 g~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~ 235 (807)
.+|++|-.. .|.+-+.+.+|+..|.++.|.| .++++|.|+.|+-||-..-..+..+..|... +.+++- +
T Consensus 572 KnVKiWGLd-FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e------v~cLav~~ 644 (888)
T KOG0306|consen 572 KNVKIWGLD-FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE------VWCLAVSP 644 (888)
T ss_pred CceEEeccc-cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe------eeeeEEcC
Confidence 999999776 5888889999999999999994 3455557999999999888888887666433 445554 4
Q ss_pred CCCEEEEE-eCCcEEEEEEe
Q 003625 236 DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 236 ~~~~l~~g-~d~~i~vw~~~ 254 (807)
+|.+++++ .|.+|++|...
T Consensus 645 ~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 645 NGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred CCCeEEeccCCceeEeeecc
Confidence 77788888 88999999653
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=1.9e-15 Score=153.69 Aligned_cols=223 Identities=15% Similarity=0.179 Sum_probs=166.7
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCee----E-------------Ee-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEE
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQV----K-------------EF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~----~-------------~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw 120 (807)
++|++++..+++.+|+|.=|+. .|... . .- +.|...|.+++.|+||++|++|+.|..|.||
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 6678899999999999999998 33321 0 11 3788889999999999999999999999999
Q ss_pred eccCCce-eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEE
Q 003625 121 SLFTDEK-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAW 196 (807)
Q Consensus 121 d~~~~~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~ 196 (807)
+.++... ..+.+|+ .|.+++|-.. ...+.+++.|++|++|+.. ......++.+|++.|.+|.-. ++.+++
T Consensus 230 ~~~t~ehv~~~~ghr~~V~~L~fr~g-----t~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~v~~IdaL~reR~vtV 303 (479)
T KOG0299|consen 230 DCDTLEHVKVFKGHRGAVSSLAFRKG-----TSELYSASADRSVKVWSID-QLSYVETLYGHQDGVLGIDALSRERCVTV 303 (479)
T ss_pred cCcccchhhcccccccceeeeeeecC-----ccceeeeecCCceEEEehh-HhHHHHHHhCCccceeeechhcccceEEe
Confidence 9999554 4679999 9999999776 6789999999999999876 345677889999999999766 677777
Q ss_pred E-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCCCcCCCCcccc-CCcceE
Q 003625 197 A-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSNVANGTYRH-VGMNQV 273 (807)
Q Consensus 197 ~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~v 273 (807)
+ .|+++++|++.....+.. ..+ ...+.|+++.++..+++| .+|.|.+|++....+......... .|..
T Consensus 304 GgrDrT~rlwKi~eesqlif-rg~------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-- 374 (479)
T KOG0299|consen 304 GGRDRTVRLWKIPEESQLIF-RGG------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-- 374 (479)
T ss_pred ccccceeEEEeccccceeee-eCC------CCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCc--
Confidence 7 799999999965444332 222 234678889888889999 899999999987664322111000 0110
Q ss_pred EEEEEeeeceEEEeeeecC-CceEEEEe
Q 003625 274 DIVASFQTSYYISGIAPFG-DCLVVLAY 300 (807)
Q Consensus 274 ~~~~~~~~~~~i~gi~~~~-~~l~vl~~ 300 (807)
...+.+++|.+++... ..++..+.
T Consensus 375 ---~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 375 ---DPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred ---cccccccceeeeEecccCceEEecC
Confidence 1122236888888887 55555543
No 100
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.2e-16 Score=150.88 Aligned_cols=195 Identities=18% Similarity=0.250 Sum_probs=153.6
Q ss_pred CCceEE--EEecCCEEEEEecCCeEEEEec-CCCeeEEec-CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-
Q 003625 54 NDAASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM- 128 (807)
Q Consensus 54 ~~~i~~--~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~- 128 (807)
.+++.| |+.+..++|+|+.||.|++|.+ .|.+++.|. +|+..|+|++||.|+..+++++.|.+++|..+.+|++.
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK 342 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH
Confidence 445666 4557889999999999999999 688888885 89999999999999999999999999999999999887
Q ss_pred EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec--CCcCeEEEEEe---C-CEEEEEeCCc
Q 003625 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR---T-SLIAWANDAG 201 (807)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~--~~~~V~~l~~~---~-~~la~~~d~~ 201 (807)
.+.+|. .|+.+.|.++ |..+++++.||+|++|+.. .+.+..++.. .+.+|.++..- + .++++...++
T Consensus 343 EfrGHsSyvn~a~ft~d-----G~~iisaSsDgtvkvW~~K-tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt 416 (508)
T KOG0275|consen 343 EFRGHSSYVNEATFTDD-----GHHIISASSDGTVKVWHGK-TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT 416 (508)
T ss_pred HhcCccccccceEEcCC-----CCeEEEecCCccEEEecCc-chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe
Confidence 489999 9999999999 9999999999999999875 4455555443 45677777665 3 5566557889
Q ss_pred EEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEE-EeCCcEEEEEEeeCC
Q 003625 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVI-GWGTYIKIASIKTNQ 257 (807)
Q Consensus 202 v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~-g~d~~i~vw~~~~~~ 257 (807)
|.|.++. |+.++.+.... ...+.++++..-..|.++.+ |.|+.++.+.+.+++
T Consensus 417 v~imn~q-GQvVrsfsSGk--REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 417 VYIMNMQ-GQVVRSFSSGK--REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EEEEecc-ceEEeeeccCC--ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 9999986 56666654432 22234555544446666554 599999999998876
No 101
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.2e-15 Score=152.69 Aligned_cols=188 Identities=19% Similarity=0.220 Sum_probs=148.1
Q ss_pred CCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCc--eeEEecCCceEEE
Q 003625 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE--KMKFDYHRPMKAI 139 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~--~~~~~~~~~v~~v 139 (807)
.+.||+||.|.+|++||+ .|++..++..|.+.|.++.|+|. ...+++|+.||+|.+.|.+... -..+.....|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 568999999999999999 57778888889999999999985 6789999999999999998522 2346666689999
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEcCCCceEEe
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITF 215 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~~~~~~~~~ 215 (807)
+|+|. +...|++++.||+|+-+|.+-.+.+..+++.|.++|++++++ +.+++++ .|+.|++|++........
T Consensus 336 ~w~~~----se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 336 AWDPH----SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred EecCC----CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 99998 467899999999999999998889999999999999999999 5777776 799999999985544322
Q ss_pred eeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 216 IERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
..+.-...+ .+|+++. ...++++| ..+.++|||+.++.+.
T Consensus 412 ~~~~~~~~r----l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGR----LHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccc----eeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 111110100 2333332 44567777 6667999999887643
No 102
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=9e-16 Score=153.53 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=155.8
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCC-cceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (807)
.+||.|+|..+++|+.|+.|..||++|+....+.+-. -.|.+++..+||+++++.+.|..+++++..+.... .+..+.
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~ 396 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ 396 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC
Confidence 4569999999999999999999999999887777744 46999999999999999999999999999886555 455566
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC--eEEEEEe---CCEEEEE-eCCcEEEEEcC
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP--VHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~--V~~l~~~---~~~la~~-~d~~v~iwd~~ 208 (807)
+|+++..+.+ ++++++.-.+..+.+||.. ....+..+.||... +-.-+|. ..++++| .|+.|+||+..
T Consensus 397 ~its~~iS~d-----~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 397 PITSFSISKD-----GKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ceeEEEEcCC-----CcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 9999999999 8999999999999999986 44555666676543 4445565 3788888 59999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEee
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~ 255 (807)
+++.+..+.+|. ..+.+++|+ +..++|+| .||+|+||....
T Consensus 471 sgkll~~LsGHs------~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SGKLLAVLSGHS------KTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceeEeecCCc------ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999876654 458899997 66788888 899999997754
No 103
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=149.43 Aligned_cols=149 Identities=19% Similarity=0.310 Sum_probs=121.3
Q ss_pred eEEEEec-CCEEEEEecCCeEEEEecC-CCe---eEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCC---ce
Q 003625 57 ASCVAVA-ERMIALGTHAGTVHILDFL-GNQ---VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTD---EK 127 (807)
Q Consensus 57 i~~~s~~-~~~la~gs~dg~I~i~d~~-~~~---~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~---~~ 127 (807)
..+|+|- ...+++|..-+.|++|... |.- ...+.+|+.+|-.++|||.. ..|+|||.||+|+|||++.+ .+
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 5688883 3357799999999999984 322 24567799999999999964 57899999999999999986 34
Q ss_pred eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--ccceEeecCCcCeEEEEEe----CCEEEEEeCC
Q 003625 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--YRDQVLHSGEGPVHVVKWR----TSLIAWANDA 200 (807)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--~~~~~~~~~~~~V~~l~~~----~~~la~~~d~ 200 (807)
...+.|. -|+.|.|+.. -.++++|+.||++.+||.+... ..+..+.-|..+|++|.|+ +.+.+++.|.
T Consensus 296 ~~~kAh~sDVNVISWnr~-----~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 296 VSTKAHNSDVNVISWNRR-----EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred eEeeccCCceeeEEccCC-----cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 5567777 9999999988 4599999999999999987443 5677888999999999999 2455555899
Q ss_pred cEEEEEcCCC
Q 003625 201 GVKVYDAAND 210 (807)
Q Consensus 201 ~v~iwd~~~~ 210 (807)
.|.+||+...
T Consensus 371 QitiWDlsvE 380 (440)
T KOG0302|consen 371 QITIWDLSVE 380 (440)
T ss_pred cEEEEEeecc
Confidence 9999999743
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.5e-14 Score=137.27 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=151.8
Q ss_pred eEEEEecCCEEEEEec--CCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecC
Q 003625 57 ASCVAVAERMIALGTH--AGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (807)
Q Consensus 57 i~~~s~~~~~la~gs~--dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (807)
..||..+.+.+..++. |.+|+..++. .+.++.+.+|...|++++.+|-++.++|++.|++|++||++..++.-+-.-
T Consensus 61 ~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 61 LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred EEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 5577777777777766 8899999994 556899999999999999999999999999999999999998777654333
Q ss_pred CceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEee---cCCcCeEEEEEe--CCEEEEE-eCCcEEEEE
Q 003625 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLH---SGEGPVHVVKWR--TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~---~~~~~V~~l~~~--~~~la~~-~d~~v~iwd 206 (807)
..-..+||+|. |-.||+|...+.|++||.+..+ .+..++. +.....+.+.|+ |+++..+ +.+.+.+.|
T Consensus 141 ~~~pi~AfDp~-----GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 141 SGRPIAAFDPE-----GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred CCCcceeECCC-----CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 32334799999 8999999988899999987553 3444443 235678999999 7776666 678899999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
.-+|.....+..+..... ..-..+| .++..+++| .||+|.+|+++++...
T Consensus 216 Af~G~~~~tfs~~~~~~~---~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGN---LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ccCCcEeeeEeeccCCCC---cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 999998888776643321 2234555 488888888 7899999999877633
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.65 E-value=9.5e-15 Score=147.37 Aligned_cols=191 Identities=14% Similarity=0.182 Sum_probs=154.9
Q ss_pred CceEEEEecC--CEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEE
Q 003625 55 DAASCVAVAE--RMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKF 130 (807)
Q Consensus 55 ~~i~~~s~~~--~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~ 130 (807)
..++++.+.+ +.+.+|+.|..+.++|.. .+.+..+++|...|+.+.++|+...+++++.|..|+||....... ...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3466766544 789999999999999995 455788999999999999999999999999999999999877443 345
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec--CCcCeEEEEEe--CCEEEEE-eCCcEEE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~--~~~~V~~l~~~--~~~la~~-~d~~v~i 204 (807)
..|. +|+.+..+|+ |.+|++++.||+..+.+.. ++........ .+-.+++.+|+ |.++.++ .|+.|+|
T Consensus 300 ~~h~~~V~~ls~h~t-----geYllsAs~d~~w~Fsd~~-~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPT-----GEYLLSASNDGTWAFSDIS-SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccceeeeeccC-----CcEEEEecCCceEEEEEcc-CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 6677 9999999999 9999999999999888776 4544444332 33458999999 6677777 6999999
Q ss_pred EEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 205 wd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
||+.++.....++. |...+..+.|+ +|.+|+++ .|++|++||++...
T Consensus 374 wdlks~~~~a~Fpg------ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPG------HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EEcCCccccccCCC------CCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 99998886666443 45568899997 77888888 67779999998765
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.65 E-value=4.2e-15 Score=158.15 Aligned_cols=194 Identities=15% Similarity=0.173 Sum_probs=151.9
Q ss_pred cCCCCccccCCCc--eEEEEec-CCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEE
Q 003625 44 MGGSLPSLLANDA--ASCVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (807)
Q Consensus 44 ~~~~~~~~~~~~~--i~~~s~~-~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw 120 (807)
.......++.+|. |+|.+.. ...+++||+|.++++|.. +.....+++|+.+|+++..-|++ .++|||.|.+|++|
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~-~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW 166 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI-GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW 166 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCceEecccccceEEecc-hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeec
Confidence 3334444555544 7777753 334789999999999986 44455689999999999999888 78899999999999
Q ss_pred eccCCceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEE-
Q 003625 121 SLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAW- 196 (807)
Q Consensus 121 d~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~- 196 (807)
.- .....++.+|. .|+++++-|+ ..|++++.||.|++|+. ++......++|+.-|.++... +..+++
T Consensus 167 k~-~~~l~tf~gHtD~VRgL~vl~~------~~flScsNDg~Ir~w~~--~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 167 KG-GTLLKTFSGHTDCVRGLAVLDD------SHFLSCSNDGSIRLWDL--DGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred cC-CchhhhhccchhheeeeEEecC------CCeEeecCCceEEEEec--cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 76 34456789999 9999999987 68999999999999988 588999999999999999954 445554
Q ss_pred EeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCe-eeeeCCCEEEEEeCCcEEEEEEeeC
Q 003625 197 ANDAGVKVYDAANDQRITFIERPRGSPRPELLLPH-LVWQDDTLLVIGWGTYIKIASIKTN 256 (807)
Q Consensus 197 ~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~-l~~~~~~~l~~g~d~~i~vw~~~~~ 256 (807)
+.|++++||+.. .+.+.+..|..+ +.+ -+|.+|..++.|.||.|+||.....
T Consensus 238 gEDrtlriW~~~--e~~q~I~lPtts------iWsa~~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 238 GEDRTLRIWKKD--ECVQVITLPTTS------IWSAKVLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCCceEEEeecC--ceEEEEecCccc------eEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence 489999999976 777777766522 222 2334777766669999999988754
No 107
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-12 Score=145.55 Aligned_cols=258 Identities=16% Similarity=0.133 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHccCc----chhhHhhhcc-----chHHHHHHHHHHHhcChhHHHHHhhhcCCCCC
Q 003625 543 ALKEALAELYVIDGHYEKAFSLYADLMKP----YIFDFIENHN-----LHDAIREKVVQLMLLDCKRAVSLLIQNKDLIT 613 (807)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~~~~~~~----~~~~~i~~~~-----~~~~~~~~~~~l~~~~~~~~~~ll~~~~~~~~ 613 (807)
.+|..+.++|.+.++|+.+++++++..+. --|-++.++- .-......+.+++..+......++++|..
T Consensus 802 ~~y~Vl~hi~~k~~kyed~l~~iLe~n~ek~~~~~fvs~e~e~l~~~~~~fr~l~~i~e~fti~~~~~~rlli~hc~--- 878 (1206)
T KOG2079|consen 802 NFYKVLFHIYKKENKYEDALSLILETNDEKEYNTDFVSIEDEILKKCPPGFRELGKITEVFTIFDLLLSRLLIEHCV--- 878 (1206)
T ss_pred ccceeHHHHHhhhhhHHHHHHHHHHhhhhhccccceEeeehhhhccCCcchHHHHHHHhhccchHHHHHHHHHHHHH---
Confidence 46667899999999999999999996531 1222222221 11114455566667777888888887642
Q ss_pred hHHHHHHHhcccccC---chhhHHHHHHHHHHhhCC---CCChhHHHHHHHHHHHhc--hHHHHHH---hhcCCCCCHHH
Q 003625 614 PSEVVTQLLNARDKC---DSRYFLHLYLHALFEVNP---HAGKDFHDMQVELYADYD--LKMLLPF---LRSSQHYTLEK 682 (807)
Q Consensus 614 ~~~vi~~l~~~~~~~---~~~~~~~~yLe~l~~~~~---~~~~~~~~~l~~ly~~~~--~~kl~~f---L~~~~~y~~~~ 682 (807)
+++..+...-... -.+.+...||..++..-. ..+....++.+|+||++- |+.++.| +.....|+..-
T Consensus 879 --d~fa~~~~n~~re~l~v~l~l~~k~l~Klfs~~si~neLd~~l~el~~E~~ckwm~sre~Il~f~~~v~~nag~~~~l 956 (1206)
T KOG2079|consen 879 --DIFADFDYNLHREILEVKLELTQKYLDKLFSTPSINNELDKRLRELHIELNCKWMSSREMILWFNGTVLSNAGSLQIL 956 (1206)
T ss_pred --HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccchHHHH
Confidence 3333332210000 011111245555554433 355678999999999964 4557888 55556666444
Q ss_pred HHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHH-----------HHHHHhhc--CC------hhHHHHHHHHh
Q 003625 683 AYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEE-----------AVEFVNMQ--HD------DELWEELIKQC 743 (807)
Q Consensus 683 al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~-----------A~~~~~~~--~~------~~lw~~ll~~~ 743 (807)
.|.....+......++++.+-....+|..+.+.+|...+. -+.+|... ++ ..+|..|+.++
T Consensus 957 ~ll~~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk~~~ni~s~~~~~tms~~d~~ss~t~ts~r~erl~~~l~t~v 1036 (1206)
T KOG2079|consen 957 DLLNQDSNHEARAVIHERLESFNLAVAFLLSFEELCLNKGKTNISSLLESLTMSFDDCNSSGTETSSRWERLITFLITLV 1036 (1206)
T ss_pred HHHhcChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHh
Confidence 4444444455556667777777788888888777643222 23343332 22 16888999988
Q ss_pred cCCchH----HHHHHHhh-cCCCC---HHHHHhhCC----CCCccccHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 003625 744 LNKPEM----VGVLLEHT-VGNLD---PLYIVNMVP----NGLEIPRLRDRLVKIITDYRTETSLRHGCNDILK 805 (807)
Q Consensus 744 ~~~~~~----~~~lL~~~-~~~i~---~~~vl~~lp----~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 805 (807)
...++. +.+.|.+. .+.++ ...+.+.|- -.++++++|+.|..++..+..+.++.+...+++.
T Consensus 1037 ~~fee~~e~~~~ksl~~~~lqlv~t~~~~~~~~lLe~~~nv~~tf~D~kqlLl~~~~s~~~e~el~~~s~kii~ 1110 (1206)
T KOG2079|consen 1037 GKFEEHDEDLCNKSLQEAFLQLVRTKSSSQMSSLLEHQDNVLMTFQDLKQLLLNVFNSYKLERELSELSQKIIE 1110 (1206)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHcCCccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876652 22222222 22222 122444443 3478999999999999999999999998888763
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.3e-15 Score=160.86 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=147.2
Q ss_pred ecCCEEEEEecCCeEEEEecC---CC----eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC--ce-eEEe
Q 003625 62 VAERMIALGTHAGTVHILDFL---GN----QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--EK-MKFD 131 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~~---~~----~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~~-~~~~ 131 (807)
|.+++|.+|+.||.|++|+.. +. .+.++..|++-|+++....+|+.|+|+|.|-+|++|+...+ -+ .++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999983 21 25677889999999999999999999999999999999875 23 3577
Q ss_pred cCC-ceEEEEe-CCCCCCcCCCEEEEecCCCeEEEEEcccC---------CccceEee-cCCcCeEEEEEe--CCEEEEE
Q 003625 132 YHR-PMKAISL-DPDYTRKMSRRFVAGGLAGHLYLNSKKWL---------GYRDQVLH-SGEGPVHVVKWR--TSLIAWA 197 (807)
Q Consensus 132 ~~~-~v~~v~~-~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---------~~~~~~~~-~~~~~V~~l~~~--~~~la~~ 197 (807)
.|+ .|.|++. .++ ...+|+||-|+.|.+|+..-. ......+. ++..+|.+++.+ |.++++|
T Consensus 115 ~H~DYVkcla~~ak~-----~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKN-----NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred cccchheeeeecccC-----ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 788 9999999 666 789999999999999997621 11222223 677889999998 5577777
Q ss_pred -eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 198 -~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
..+.+++||.++++.+..+..|.. -+..+.. .+|..+++| .||+|++||+....
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTd------NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTD------NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CcccceEEeccccccceeeeecccc------ceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 689999999999988887766543 2444444 478888888 99999999997654
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.8e-15 Score=139.57 Aligned_cols=208 Identities=17% Similarity=0.193 Sum_probs=150.1
Q ss_pred CceeeeecCCCCccccCCCceEEEEe--cCCEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCC--CCEEE
Q 003625 37 PRLKYQRMGGSLPSLLANDAASCVAV--AERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVD--GEYVG 109 (807)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~i~~~s~--~~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~--g~~l~ 109 (807)
+...+.++.+++... +|+. -|++||+++.||.|.||.-.+.. ...+..|.+.|++++|.|. |-.|+
T Consensus 48 ll~~L~Gh~GPVwqv-------~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKV-------AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred eeeEecCCCCCeeEE-------eecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEE
Confidence 334444555555444 5544 69999999999999999985443 4556789999999999986 56799
Q ss_pred EEeCCCcEEEEeccCC-c---eeEEecCC-ceEEEEeCCCCCC---------cCCCEEEEecCCCeEEEEEcccCC-ccc
Q 003625 110 SCSDDGSVVINSLFTD-E---KMKFDYHR-PMKAISLDPDYTR---------KMSRRFVAGGLAGHLYLNSKKWLG-YRD 174 (807)
Q Consensus 110 s~~~Dg~v~iwd~~~~-~---~~~~~~~~-~v~~v~~~p~~~~---------~~~~~l~~g~~dg~v~l~~~~~~~-~~~ 174 (807)
+++.||.|.|.+.++. . ......|. .|++|.|.|.-.. ...+.|++|+.|..|++|...-.. ...
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e 200 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE 200 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh
Confidence 9999999999988763 2 22357788 9999999996321 112569999999999999764222 234
Q ss_pred eEeecCCcCeEEEEEeC------CEEEEE-eCCcEEEEEcCCC--ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-
Q 003625 175 QVLHSGEGPVHVVKWRT------SLIAWA-NDAGVKVYDAAND--QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG- 243 (807)
Q Consensus 175 ~~~~~~~~~V~~l~~~~------~~la~~-~d~~v~iwd~~~~--~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g- 243 (807)
..+.+|.+.|..++|.| ..+|++ .||+|.||..+.. +...++.. .....+.+++|+ .|..|+++
T Consensus 201 ~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-----~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 201 RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-----EFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc-----cCCcceEEEEEeccccEEEEec
Confidence 45889999999999993 456666 7999999987732 11111111 122345677886 78888888
Q ss_pred eCCcEEEEEEeeC
Q 003625 244 WGTYIKIASIKTN 256 (807)
Q Consensus 244 ~d~~i~vw~~~~~ 256 (807)
.|+.|++|.-...
T Consensus 276 GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 276 GDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEEeCCC
Confidence 8899999976544
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.64 E-value=3.9e-15 Score=143.73 Aligned_cols=194 Identities=13% Similarity=0.159 Sum_probs=146.1
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCee---EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE----Ee
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK----FD 131 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~----~~ 131 (807)
.|+|....|++|+.|++|++||...... ...-....+|.+++|+|.|.+++.|....++++||+.+-++.. -.
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 5888889999999999999999954332 1122344589999999999999999999999999999976653 24
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee-cCC-cCeEEEEEe--CCEEEEE-eCCcEEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGE-GPVHVVKWR--TSLIAWA-NDAGVKVY 205 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~-~~~-~~V~~l~~~--~~~la~~-~d~~v~iw 205 (807)
.|. .|++|.+++. ++..++|+.||.|++||.. .++++.++. .|. ..|++..|. |+++.++ .|..|++|
T Consensus 259 qht~ai~~V~Ys~t-----~~lYvTaSkDG~IklwDGV-S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 259 QHTGAITQVRYSST-----GSLYVTASKDGAIKLWDGV-SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ccccceeEEEecCC-----ccEEEEeccCCcEEeeccc-cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 566 9999999999 8999999999999999875 455555554 344 468888998 7887776 79999999
Q ss_pred EcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCCCc
Q 003625 206 DAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQSN 259 (807)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~~~ 259 (807)
.+.+++++......+.. +.........|+ ...+++.- ..+.+.-||.++....
T Consensus 333 Ei~t~R~l~~YtGAg~t-grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTT-GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eecCCceEEEEecCCcc-cchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 99999999876655321 212223445554 33444433 5667888988876543
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=8e-14 Score=132.06 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=156.7
Q ss_pred eeecCCCCccccCCCceEEEEe-cCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEE
Q 003625 41 YQRMGGSLPSLLANDAASCVAV-AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (807)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~-~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (807)
+.++++.+... ||.| +...+++++.|.+|++||. .++++..+....+.|. +.|+|+|.+++.++.|..|.
T Consensus 60 ~~gh~~svdql-------~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 60 YRGHTDSVDQL-------CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred ccCCCcchhhh-------eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEE
Confidence 44444445444 6666 7889999999999999999 6777777766555665 78999999999999999999
Q ss_pred EEeccCCceeE-EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEE
Q 003625 119 INSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA 195 (807)
Q Consensus 119 iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la 195 (807)
..|.++.++.. .+....+.-++|+.+ +.+|+.....|.|.+..-- ..++...+..|+..+.||.|+ |+++|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~-----nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNS-----NDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCC-----CCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEe
Confidence 99999866654 444458888999865 6777777778999886432 347788899999999999999 89999
Q ss_pred EE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 196 WA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 196 ~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+| .|..+.+||+..--+.+.+.+.. -.+..++|+ +|++|++| .|..|-|-.+.+|.
T Consensus 206 ~GsADAlvSLWD~~ELiC~R~isRld------wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 206 TGSADALVSLWDVDELICERCISRLD------WPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred eccccceeeccChhHhhhheeecccc------CceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 98 69999999999888888766554 236678886 99999999 78888888887776
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.9e-14 Score=137.53 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=118.5
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR 134 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~ 134 (807)
|+. |+|.++.|+++++||++++|+......+..-.|..++.+++|.+ ...+++|+.||.|+.+|+.++....+..|.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~ 94 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHD 94 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCC
Confidence 544 66777888899999999999997665555556999999999997 457899999999999999999888888888
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeCCEEEE-EeCCcEEEEEcCCC
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAW-ANDAGVKVYDAAND 210 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~~~la~-~~d~~v~iwd~~~~ 210 (807)
+|.|+...+. ...+++|+.|++|++||.+. ......+. ....|.++...|+.|+. +.+..|.+||+++.
T Consensus 95 ~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 95 EGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred CceEEEEeecc-----CCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 9999999987 68999999999999999872 22222222 23478888888766665 58999999999864
No 113
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.63 E-value=1.1e-14 Score=154.94 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=143.8
Q ss_pred cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceEEEE
Q 003625 63 AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAIS 140 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~ 140 (807)
++..+++|+.|+.|.+|... ..+...+++|.+.|.+++...++. ++|||.|.++++|.... ....+.+|. +|++++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-LVYSLQGHTASVWAVA 147 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-hhcccCCcchheeeee
Confidence 44568999999999999995 566889999999999999888887 99999999999997642 233588999 999999
Q ss_pred eCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceEEeeeC
Q 003625 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIER 218 (807)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~~~~i~~ 218 (807)
.-|. ..++||+.|.+|++|.. +...+++.+|...|.++++- +.++.+++||.|+.|++ ++.++.....
T Consensus 148 ~l~e------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~g 217 (745)
T KOG0301|consen 148 SLPE------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHG 217 (745)
T ss_pred ecCC------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeec
Confidence 9998 49999999999999965 57888999999999999987 47888889999999999 5677666443
Q ss_pred CCCCCCCCCCCCeeee--eCCCEEEEEeCCcEEEEEEe
Q 003625 219 PRGSPRPELLLPHLVW--QDDTLLVIGWGTYIKIASIK 254 (807)
Q Consensus 219 ~~~~~~~~~~~~~l~~--~~~~~l~~g~d~~i~vw~~~ 254 (807)
|..++.+++. +++..+.+|.|++++||+..
T Consensus 218 ------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 218 ------HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ------cceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 3456777763 24445555599999999876
No 114
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=8.3e-15 Score=141.99 Aligned_cols=199 Identities=14% Similarity=0.171 Sum_probs=135.2
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCce
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPM 136 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v 136 (807)
.|++.|.++|+|+.+|.|.|||..+.. .+.+.+|..+|++++||++|+.|+|+|.|..+.+||+..|.+. .+.+..||
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv 109 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPV 109 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcc
Confidence 388899999999999999999996544 5677899999999999999999999999999999999987654 45555566
Q ss_pred EEEEeCCCC------------------------------------------CCcCCCEEEEecCCCeEEEEEcccCCccc
Q 003625 137 KAISLDPDY------------------------------------------TRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (807)
Q Consensus 137 ~~v~~~p~~------------------------------------------~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (807)
+.+.|+|.- ..+.|+++++|...|.+.+++... ....
T Consensus 110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t-~e~v 188 (405)
T KOG1273|consen 110 WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET-LECV 188 (405)
T ss_pred ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch-heee
Confidence 666665530 012367888888888888876541 2222
Q ss_pred eEeecCC-cCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceE---EeeeCC---CCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 175 QVLHSGE-GPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRI---TFIERP---RGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 175 ~~~~~~~-~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~---~~i~~~---~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
..+.-.. ..|..+.++ |++++.. +|+.||.|+++.--.. ..+... ....+-..|. +++|+ +|.+++.|
T Consensus 189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk-~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK-KCCFSGDGEYVCAG 267 (405)
T ss_pred eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh-heeecCCccEEEec
Confidence 2222222 567777777 8877776 8999999998621000 000000 0011111122 34444 67777766
Q ss_pred --eCCcEEEEEEeeCCCc
Q 003625 244 --WGTYIKIASIKTNQSN 259 (807)
Q Consensus 244 --~d~~i~vw~~~~~~~~ 259 (807)
....++||.-..|...
T Consensus 268 s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLV 285 (405)
T ss_pred cccceeEEEEecCCccee
Confidence 5667999988777533
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.62 E-value=7.3e-15 Score=147.42 Aligned_cols=191 Identities=14% Similarity=0.123 Sum_probs=149.4
Q ss_pred ceEE--EEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE-e
Q 003625 56 AASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-D 131 (807)
Q Consensus 56 ~i~~--~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~ 131 (807)
.+++ +.++++.++..++|+.+++|+.+ ++...++.+|++.|+++.|......+++|+.|.+++.||+.+..|.+- .
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 3555 55678899999999999999995 666788999999999999998877799999999999999999877653 3
Q ss_pred cCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--C-CEEEEEeCCcEEEEEcC
Q 003625 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~-~~la~~~d~~v~iwd~~ 208 (807)
....+..|..++ ..+++|..|++|++||.+ ...+...+..+ |.|+++..+ | .+++++.|.++.+.|++
T Consensus 301 ~~S~cnDI~~~~-------~~~~SgH~DkkvRfwD~R-s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 301 PGSQCNDIVCSI-------SDVISGHFDKKVRFWDIR-SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred ccccccceEecc-------eeeeecccccceEEEecc-CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 333666666653 478999999999999976 34444444444 489999888 4 45555579999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+......+........++ .+.+.|+ ++.++++| .||.|+||++.+++
T Consensus 372 t~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGK 420 (459)
T ss_pred cccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCce
Confidence 998888776665333332 4556665 77888888 89999999998876
No 116
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.1e-14 Score=159.37 Aligned_cols=190 Identities=14% Similarity=0.215 Sum_probs=146.8
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecCCCee-EE--ecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCc-eeEEec
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFLGNQV-KE--FPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE-KMKFDY 132 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~~~~~-~~--~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~ 132 (807)
.|++ .++.+|+|+.+|.|.|||++.-.. .+ -....+.|.+++|+.. .+.|++++.+|.+.|||++..+ +..+..
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 5666 466999999999999999953221 11 2235568999999975 4458899999999999999854 445544
Q ss_pred CC---ceEEEEeCCCCCCcCCCEEEEecCCC---eEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcE
Q 003625 133 HR---PMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGV 202 (807)
Q Consensus 133 ~~---~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v 202 (807)
+. .+..++|||+ ....+++++.|. .|.+||.++.....+++.+|+..|.++.|+ +++++++ .|+.|
T Consensus 203 ~~~~~~~S~l~WhP~----~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPD----HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred CCCccceeeeeeCCC----CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 33 5889999999 345555555443 499999998888899999999999999999 3666666 79999
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
.+|+..+++.+..+... ..|...+.|. +...++++ .+|.|.|+.+.....
T Consensus 279 i~wN~~tgEvl~~~p~~------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 279 ICWNPNTGEVLGELPAQ------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred eEecCCCceEeeecCCC------CcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 99999999999886543 3477788886 44566666 999999999987663
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.62 E-value=3.2e-14 Score=144.70 Aligned_cols=188 Identities=18% Similarity=0.230 Sum_probs=144.4
Q ss_pred EEEEecC--CEEEEEecCCeEEEEecCCCe-----eEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCc---
Q 003625 58 SCVAVAE--RMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDE--- 126 (807)
Q Consensus 58 ~~~s~~~--~~la~gs~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~--- 126 (807)
.+|+|.. +++|+|...|.|-+||+.++. +..+..|+++|+++.|+|.. ..+.+.|.||+++.-|+.+..
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 3477743 589999999999999994222 56778899999999999954 579999999999999998744
Q ss_pred eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCc
Q 003625 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAG 201 (807)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~ 201 (807)
+...+... .+.++.|+.+ ...++.|+.=|...+||.+..+.....+.-|...|++++++ +.+++++ .|++
T Consensus 272 v~s~~~d~~~fs~~d~~~e-----~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T 346 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAE-----SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT 346 (498)
T ss_pred HhhcCccceeeeeccccCC-----CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc
Confidence 33444444 7888888877 67788888888999999987777677777788899999999 5788887 6999
Q ss_pred EEEEEcCCCceEEe--eeCCCCCCCCCCCCCeeeee--CCCEEEEEeCCcEEEEEEe
Q 003625 202 VKVYDAANDQRITF--IERPRGSPRPELLLPHLVWQ--DDTLLVIGWGTYIKIASIK 254 (807)
Q Consensus 202 v~iwd~~~~~~~~~--i~~~~~~~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~ 254 (807)
.+|||++.-..... +. ...|...+.+..|+ ++.++.++.|+.|+|||..
T Consensus 347 ~kIWD~R~l~~K~sp~ls----t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 347 AKIWDLRQLRGKASPFLS----TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeeeehhhhcCCCCccee----cccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999985322211 11 23344557777775 5665556699999999985
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=3.6e-15 Score=160.50 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=131.5
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCc-e-eEEecC
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDE-K-MKFDYH 133 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~-~-~~~~~~ 133 (807)
+|++ ..++|++|+.||+|++||+. .....++.+...+|.++.|+|. +..++++.+.|.+..||++... + ..+..|
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 3444 57799999999999999995 4446677888889999999984 7789999999999999999743 3 367888
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEE---eCCcEEEEE
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWA---NDAGVKVYD 206 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~---~d~~v~iwd 206 (807)
. +|.|+.|+|+ ..++|+||.|+.|++|+..-........-..-.+|.+++|.| ..||++ .|..|+|||
T Consensus 220 ~GpV~c~nwhPn-----r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 220 NGPVLCLNWHPN-----REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred cCceEEEeecCC-----CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 8 9999999999 899999999999999987521111111122346899999993 556655 588999999
Q ss_pred cCCCc-eEEeeeCCCCCCCCCCCCCeeeeeC--CCEEEEE-eCCcEEE
Q 003625 207 AANDQ-RITFIERPRGSPRPELLLPHLVWQD--DTLLVIG-WGTYIKI 250 (807)
Q Consensus 207 ~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~~--~~~l~~g-~d~~i~v 250 (807)
++..- +..++..+ ...+..++|.. ...+.++ .|++|..
T Consensus 295 vrRPYIP~~t~~eH------~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 295 VRRPYIPYATFLEH------TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccccccceeeecc------CccccceeccCCCceeeEeecCccHHHH
Confidence 97432 22233333 33466777753 3333333 5555543
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1e-13 Score=134.79 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=140.8
Q ss_pred CceEEEEec--C--CEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE
Q 003625 55 DAASCVAVA--E--RMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK 129 (807)
Q Consensus 55 ~~i~~~s~~--~--~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~ 129 (807)
+.|+|+.+. . +.|++|+.||.|.+|+.. ...+.++++|.+.|+.++++|.|+.-++.+.|+.++.||+-.|+...
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF 163 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence 446775543 2 378999999999999994 55588999999999999999999999999999999999998877653
Q ss_pred -EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEEE
Q 003625 130 -FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 130 -~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iwd 206 (807)
.+-....+.|.|+|. |.+|+.++.+ .|-+|... .......-..+..+.++.|- +..+++| .|+.|++||
T Consensus 164 v~~L~~~at~v~w~~~-----Gd~F~v~~~~-~i~i~q~d--~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 164 VLNLKNKATLVSWSPQ-----GDHFVVSGRN-KIDIYQLD--NASVFREIENPKRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred eeccCCcceeeEEcCC-----CCEEEEEecc-EEEEEecc--cHhHhhhhhccccceeeeecCCceEEEecCCceEEEec
Confidence 333334555999998 8888888876 56677653 11111111223457788887 5555555 789999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeee-e--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVW-Q--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
..+..+...+..|... +-.+.+ . .+.+|+++ .||.|+|||++...
T Consensus 236 ~ds~~~~~~~~AH~~R------VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 236 TDSDTPLTEFLAHENR------VKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred cCCCccceeeecchhh------eeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9988888776666433 444543 2 45677777 99999999998764
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=8.6e-15 Score=144.49 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=148.0
Q ss_pred CceEEEEecCC---EEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE
Q 003625 55 DAASCVAVAER---MIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF 130 (807)
Q Consensus 55 ~~i~~~s~~~~---~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~ 130 (807)
+.|.|++-+.+ .+++|+.||.|+|||+.. .+..++++|.+.|..|+++. ..++++|.|.+|+.|-+......++
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~ti 144 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTI 144 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceee
Confidence 44788776554 589999999999999964 45789999999999999986 6789999999999999988766677
Q ss_pred ecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEE
Q 003625 131 DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 131 ~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd 206 (807)
.+...+..+.-+.. +..|+|+|. .|.+||.. -..+.+.+..+...|.++.|+ ..+|+++ +|++|.+||
T Consensus 145 lg~s~~~gIdh~~~-----~~~FaTcGe--~i~IWD~~-R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRK-----NSVFATCGE--QIDIWDEQ-RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred eccccccccccccc-----cccccccCc--eeeecccc-cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 77777777766655 678999998 78889875 235666677777889999999 4677777 899999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEE-eCCcEEEEEEeeCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
++++.++..+... +....++|++ ...+++| .|..++.+|++.-.
T Consensus 217 ~R~~~Pl~KVi~~-------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 217 LRQASPLKKVILT-------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred cccCCccceeeee-------ccccceecCccccceeeccccccceehhhhhhc
Confidence 9999888754332 2356788974 4556666 88889999998655
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.9e-15 Score=161.38 Aligned_cols=178 Identities=21% Similarity=0.331 Sum_probs=148.1
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC-c
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~ 135 (807)
.+++....|+.|+.+|+|++||+ .+..++++.+|...+.++.|+|-|.++++|+.|+.+++||.+. |....+.+|. .
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 46677889999999999999999 4666889999999999999999999999999999999999995 6677788887 8
Q ss_pred eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCcEEEEEcCCCce
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~v~iwd~~~~~~ 212 (807)
|.+++|+|+ |++++.|+.|..+++||.. .|.-...+.+|++.|.++.|++ -+++.+ .|+++++||+++...
T Consensus 157 v~~l~lsP~-----Gr~v~~g~ed~tvki~d~~-agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 157 VDVLRLSPD-----GRWVASGGEDNTVKIWDLT-AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred eEEEeecCC-----CceeeccCCcceeeeeccc-ccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 999999999 9999999999999999886 5677788899999999999993 455666 799999999998877
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcE
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYI 248 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i 248 (807)
+....... .-+.+..|+ ++..+.+|.....
T Consensus 231 I~s~~~~~------~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 231 ISSGKPET------DGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeccCCcc------CCceeeeecCCceeeecCchhhh
Confidence 76543322 235566674 6666777744333
No 122
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.1e-13 Score=129.71 Aligned_cols=192 Identities=19% Similarity=0.293 Sum_probs=147.5
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCC----------C-eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLG----------N-QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD- 125 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~----------~-~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~- 125 (807)
.+++|.+++++.|..+|.|.++.++. + .+...++|.++|+.++|. ..+|++|+. |.|+-|..+..
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 47999999999999999999998731 1 144568999999999998 557777765 99998876531
Q ss_pred ------cee----EEe--cCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-
Q 003625 126 ------EKM----KFD--YHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR- 190 (807)
Q Consensus 126 ------~~~----~~~--~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~- 190 (807)
+.. ... .-. .|+++-..|. .+.+++++.||.++.||.. +|+..+.+.+|...|.++.-.
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-----enSi~~AgGD~~~y~~dlE-~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-----ENSILFAGGDGVIYQVDLE-DGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccC-----CCcEEEecCCeEEEEEEec-CCEEEEEEcCCcceeeeeeecc
Confidence 111 111 112 6899999998 5666667789999999986 788889999999999999885
Q ss_pred --CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCC----CCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCCCc
Q 003625 191 --TSLIAWANDAGVKVYDAANDQRITFIERPRGS----PRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSN 259 (807)
Q Consensus 191 --~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~----~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~ 259 (807)
|+++.++.||++|+||+++++.+..+...... +....|+.+++- +..++++|.+..+.+|+++...+.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGgGp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGGGPKLSLWHLRSSEST 240 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-cCceEEecCCCceeEEeccCCCce
Confidence 78888889999999999999999887654321 122334444432 778999999999999999877643
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.59 E-value=1.7e-14 Score=135.45 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=145.9
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCC--CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLG--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR 134 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~ 134 (807)
++|+.+.+.|++|+.+..++|||++. .+...+.+|++.|..+-|....+.|+|.+.|++||+||.+++.. .++....
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s 185 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS 185 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC
Confidence 45777889999999999999999953 44678899999999999999999999999999999999999765 4688888
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEEeCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~~~ 211 (807)
+|+++.++++ |+++.++. .+.|.+|+....+ ..+.+. -...|.+...+ +.+++++.|..++.||..++.
T Consensus 186 ~VtSlEvs~d-----G~ilTia~-gssV~Fwdaksf~-~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 186 PVTSLEVSQD-----GRILTIAY-GSSVKFWDAKSFG-LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred CCcceeeccC-----CCEEEEec-CceeEEecccccc-ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc
Confidence 9999999999 67666554 4689999765222 111111 12346666666 345666689999999999998
Q ss_pred eEEee-eCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 212 RITFI-ERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 212 ~~~~i-~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
.+... +.+ -..+-|+.|+ +|...++| .||+|++|....++..
T Consensus 258 Ei~~~nkgh------~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 EIGSYNKGH------FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeecccCC------CCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88764 333 2347788896 77888888 9999999999877644
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.1e-14 Score=143.78 Aligned_cols=217 Identities=16% Similarity=0.146 Sum_probs=155.4
Q ss_pred CCceeeeecCCCC---ccccCCCceEEE--EecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEE
Q 003625 36 EPRLKYQRMGGSL---PSLLANDAASCV--AVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVG 109 (807)
Q Consensus 36 ~~~l~~~~~~~~~---~~~~~~~~i~~~--s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~ 109 (807)
.|.+-+|.+.... ..+.-.+.+.|+ +|+|.+++.|+..|.|++|.+ +|..+..+.+|-.+|+++.|+-||.+|+
T Consensus 60 rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred CccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence 3455555443321 122334445564 567889999989999999999 5777888899999999999999999999
Q ss_pred EEeCCCcEEEEeccC----------CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee
Q 003625 110 SCSDDGSVVINSLFT----------DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH 178 (807)
Q Consensus 110 s~~~Dg~v~iwd~~~----------~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~ 178 (807)
|||.||.|.+|.+.. .....+..|. +|+.+...+.- ....+++++.|.++++|+.. .+.....+
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg---~~~rl~TaS~D~t~k~wdlS-~g~LLlti- 214 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG---TNARLYTASEDRTIKLWDLS-LGVLLLTI- 214 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---ccceEEEecCCceEEEEEec-cceeeEEE-
Confidence 999999999998653 1234678888 99999887651 13689999999999999986 33332222
Q ss_pred cCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc--eE------EeeeCC--CCCCCCCC--CCCeeeee-CCCEEEE
Q 003625 179 SGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ--RI------TFIERP--RGSPRPEL--LLPHLVWQ-DDTLLVI 242 (807)
Q Consensus 179 ~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~--~~------~~i~~~--~~~~~~~~--~~~~l~~~-~~~~l~~ 242 (807)
.-+.++.+++.+ ++.+..| .+|.|.+.++.+.. .. ...... ....+|.. .++|++.+ ++.+|++
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 235678899988 4555555 79998888775432 11 000000 11223333 67888886 8999999
Q ss_pred E-eCCcEEEEEEeeCC
Q 003625 243 G-WGTYIKIASIKTNQ 257 (807)
Q Consensus 243 g-~d~~i~vw~~~~~~ 257 (807)
| .||.|.|||+.+.+
T Consensus 295 Gd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eCCCCCEEEEecchHH
Confidence 9 99999999998765
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.6e-14 Score=144.87 Aligned_cols=168 Identities=21% Similarity=0.310 Sum_probs=136.3
Q ss_pred CCCccccCCCc--eEE--EEecCCEEEEEecCCeEEEEecC----------CCeeEEecCCCcceeEEEEcCCC--CEEE
Q 003625 46 GSLPSLLANDA--ASC--VAVAERMIALGTHAGTVHILDFL----------GNQVKEFPAHTAAVNDLSFDVDG--EYVG 109 (807)
Q Consensus 46 ~~~~~~~~~~~--i~~--~s~~~~~la~gs~dg~I~i~d~~----------~~~~~~~~~h~~~V~~l~~s~~g--~~l~ 109 (807)
|.+-.++.+|. |+| |+-+|.+|++|+.||.|++|.+. ..+...|..|+-+|+++...+.| .+++
T Consensus 113 G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 113 GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 44555555543 788 55589999999999999999862 12367888999999999988754 5799
Q ss_pred EEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc-c--------------CCcc
Q 003625 110 SCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-W--------------LGYR 173 (807)
Q Consensus 110 s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~--------------~~~~ 173 (807)
|+|.|.++++||+..+.+. ++..+.++++++.+|. .+.+.+|+.+|.|.+.... + .+..
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa-----e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA-----ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred EecCCceEEEEEeccceeeEEEecCCcceeEEEccc-----ccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 9999999999999998765 5777889999999999 8999999999998776421 1 1234
Q ss_pred ceEeecCCc--CeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeC
Q 003625 174 DQVLHSGEG--PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIER 218 (807)
Q Consensus 174 ~~~~~~~~~--~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~ 218 (807)
...+.+|.+ +|+|++.+ |.++++| .||.|+|||+.+.++++++..
T Consensus 268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 556677877 99999988 8999988 699999999999999987653
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-13 Score=143.37 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=143.4
Q ss_pred ceEE--EEecCCEEEEEecCCeEEEEecCCCe--eEEecCCC-cceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-E
Q 003625 56 AASC--VAVAERMIALGTHAGTVHILDFLGNQ--VKEFPAHT-AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-K 129 (807)
Q Consensus 56 ~i~~--~s~~~~~la~gs~dg~I~i~d~~~~~--~~~~~~h~-~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (807)
.|+| ++.+.+.||+|-.+|.|.||++.... ...+.++. ..|.+++|++ |..|.|.+.+|.|.-||+.+.+.. .
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEE
Confidence 3555 55577899999999999999995332 45566654 5899999994 556789999999999999996654 5
Q ss_pred EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEE
Q 003625 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (807)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~i 204 (807)
++... +|++++.+|. +..+++|+.||.+..++..... .-...+...++.|.++.|+ +.-+++| .||.|++
T Consensus 106 ~d~~gg~IWsiai~p~-----~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPE-----NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ecCCCcceeEEEeCCc-----cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 66666 9999999999 8999999999977666554211 1223344456899999999 4545666 7999999
Q ss_pred EEcCCCceEEeeeCCCCCCCCCCCCCeeeee----CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ----DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 205 wd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~----~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
||..++..+..+...-. +....-+.+.|+ ....+++| ..|+|++||...+.
T Consensus 181 wd~~~~~t~~~~~~~~d--~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLD--RLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEcCCCceEEEeeeccc--ccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 99999887774333211 111123456675 77788999 99999999987765
No 127
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=2.9e-14 Score=150.72 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=148.6
Q ss_pred EecCCEEEEEecCCeEEEEecC-C--CeeEEecCCCcceeEEEE-cCCCCEEEEEeCCCcEEEEeccCCce---------
Q 003625 61 AVAERMIALGTHAGTVHILDFL-G--NQVKEFPAHTAAVNDLSF-DVDGEYVGSCSDDGSVVINSLFTDEK--------- 127 (807)
Q Consensus 61 s~~~~~la~gs~dg~I~i~d~~-~--~~~~~~~~h~~~V~~l~~-s~~g~~l~s~~~Dg~v~iwd~~~~~~--------- 127 (807)
+.+|+.++++|+|-+|++|+.. + .+..++..|++-|.|++. .++...+||||-|+.|.+||+.++..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 3467789999999999999994 3 346778889999999999 88899999999999999999997521
Q ss_pred --eEEe-cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEE-EEeCC
Q 003625 128 --MKFD-YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA-WANDA 200 (807)
Q Consensus 128 --~~~~-~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la-~~~d~ 200 (807)
..+. +++ +|.+++-++. +..|++|+..+.+++||.+ .+.+...+.+|...|.++..+ |+.+. +++||
T Consensus 162 t~~sl~sG~k~siYSLA~N~t-----~t~ivsGgtek~lr~wDpr-t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQT-----GTIIVSGGTEKDLRLWDPR-TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred ccccCCCCCccceeeeecCCc-----ceEEEecCcccceEEeccc-cccceeeeeccccceEEEEEcCCCCeEeecCCCc
Confidence 1122 566 9999999998 8999999999999999998 567777778999999999998 65554 55899
Q ss_pred cEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 201 ~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
+|++||+...+++.++..|... +.++..+ +=..+.+| .|+.|..-+++..
T Consensus 236 tIrlWdLgqQrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 236 TIRLWDLGQQRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEeeeccccceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999988777543 2222222 33566777 8999988888764
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.5e-13 Score=149.39 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=154.7
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCC--eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-EecC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGN--QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDYH 133 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~ 133 (807)
-.|+.++|++|++++.||.|++|+.... ...++..+...|.+++.. +.+|++|+.+++|.++....+.... +..-
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeee
Confidence 4589999999999999999999998432 233444477788877654 6699999999999999998876553 3333
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCC
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~ 209 (807)
. |+++++++-+ |.+++.|+.|-.|++.+.. +....+++.+|+++|.++.|+ +.++|++ .||.|++||+.+
T Consensus 96 tlp~r~~~v~g~-----g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 96 TLPIRDLAVSGS-----GKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eccceEEEEecC-----CcEEEeecCceeEEEEecc-ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 4 9999999998 8999999999999998775 678889999999999999999 7899988 699999999999
Q ss_pred CceEEeeeCCCCCCC--CCCCCCeeeee--CCCEEEEEeCCcEEEEEEeeCC
Q 003625 210 DQRITFIERPRGSPR--PELLLPHLVWQ--DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 210 ~~~~~~i~~~~~~~~--~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
+.+..++..-..... ....++.++|+ .+.+++.+.+++|++|+.....
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 988776655432222 23446778996 4667777799999999887654
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-12 Score=127.19 Aligned_cols=191 Identities=20% Similarity=0.313 Sum_probs=139.3
Q ss_pred EEEecCCEEEEEecCCeEEEEecC---CC--eeEEecCCCcceeEEEEcCC--CCEEEEEeCCCcEEEEeccC------C
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL---GN--QVKEFPAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFT------D 125 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~---~~--~~~~~~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~------~ 125 (807)
.|.+.|+.+|+|+.|++|+|||.+ |+ ....++.|.++|..+.|.+- |+.+|+|+.|+++.||.-.. +
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 366689999999999999999962 22 25678999999999999763 89999999999999997521 1
Q ss_pred ----ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc-------cCC-ccce----EeecCCcCeEEEE
Q 003625 126 ----EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-------WLG-YRDQ----VLHSGEGPVHVVK 188 (807)
Q Consensus 126 ----~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-------~~~-~~~~----~~~~~~~~V~~l~ 188 (807)
++.++...+ .|+.|.|.|.. -|-.+++++.||.+++|+.. |.- ...+ ....+..+..|+.
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~h---lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKH---LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchh---cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 133455556 99999999974 26789999999999999742 221 1111 1123567788999
Q ss_pred Ee-----CCEEEEEeCC------cEEEEEcCCCc-eEEeeeCCCCCCCCCCCCCeeeee-----CCCEEEEE-eCCcEEE
Q 003625 189 WR-----TSLIAWANDA------GVKVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQ-----DDTLLVIG-WGTYIKI 250 (807)
Q Consensus 189 ~~-----~~~la~~~d~------~v~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~-----~~~~l~~g-~d~~i~v 250 (807)
|+ ..++|.+.|. .+.||....+. .-..+ ...+.+...+..++|. .-.+++++ .|| |+|
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I 252 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRI 252 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEE
Confidence 98 4678888665 79999876433 21111 1233556678889996 33678888 677 999
Q ss_pred EEEeeC
Q 003625 251 ASIKTN 256 (807)
Q Consensus 251 w~~~~~ 256 (807)
|+++..
T Consensus 253 ~~v~~~ 258 (361)
T KOG2445|consen 253 FKVKVA 258 (361)
T ss_pred EEEeec
Confidence 999864
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=4.1e-15 Score=158.80 Aligned_cols=182 Identities=16% Similarity=0.255 Sum_probs=153.3
Q ss_pred cCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC-ceEEE
Q 003625 63 AERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKAI 139 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~v 139 (807)
.++.+++|+.+-.+-+|... -..+..+.+|.++|.++.|+++...|++|+.+|+|++||+..+++ .++.+|. .+.+|
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 56789999999999999983 445667899999999999999999999999999999999998664 4688888 99999
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEee
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFI 216 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i 216 (807)
.|+|- +.+++.|+.|+.+.+||.+. ..+...+.+|...|..+.|+ |.+++.+ .|.+++|||...|+....+
T Consensus 119 ~f~P~-----~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 119 DFHPY-----GEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred eeccc-----eEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 99998 89999999999999999873 45667788899999999999 7899988 5799999999999988877
Q ss_pred eCCCCCCCCCCCCCeeeeeC-CCEEEEE-eCCcEEEEEEeeC
Q 003625 217 ERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~~~ 256 (807)
+.+... +..+.+.. .-+++.| .|+++++||+++.
T Consensus 193 ~~~e~~------v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 193 KSHEGK------VQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred cccccc------ccccccCchhhhhccCCCCceeeeecccee
Confidence 655432 44455543 3455666 8999999999854
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.1e-13 Score=132.53 Aligned_cols=194 Identities=12% Similarity=0.166 Sum_probs=138.6
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecCCCe------eE-------------------------------Ee--------
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFLGNQ------VK-------------------------------EF-------- 89 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~~~~------~~-------------------------------~~-------- 89 (807)
|+| |+.+|+.||+++.||+|++|++..-. ++ .+
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 554 77799999999999999999973210 00 00
Q ss_pred ---------------cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCCCEE
Q 003625 90 ---------------PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRF 153 (807)
Q Consensus 90 ---------------~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l 153 (807)
+.|...|-++-...++.+|+|++.|.+|.+|++..+.+..++... .-...+.+|+ |+++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~-----GRFi 243 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPD-----GRFI 243 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCC-----CcEE
Confidence 012233334444457889999999999999999966566777666 7788899999 9999
Q ss_pred EEecCCCeEEEEEcccCC-------ccceEeecCCcCeEEEEEe--C-CEEEEEeCCcEEEEEcCCCc-------eEEee
Q 003625 154 VAGGLAGHLYLNSKKWLG-------YRDQVLHSGEGPVHVVKWR--T-SLIAWANDAGVKVYDAANDQ-------RITFI 216 (807)
Q Consensus 154 ~~g~~dg~v~l~~~~~~~-------~~~~~~~~~~~~V~~l~~~--~-~~la~~~d~~v~iwd~~~~~-------~~~~i 216 (807)
++++-.-.|++|..-+.. .+...+.+|...|...+|+ . +.+..+.||+++|||+.-.- .+...
T Consensus 244 a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g 323 (420)
T KOG2096|consen 244 AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG 323 (420)
T ss_pred EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcC
Confidence 999999999999865442 4456788999999999999 3 44455579999999986321 11221
Q ss_pred eCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 217 ERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
..+- ...+.-++.+..+ .+..|+++.+..++++..+++.
T Consensus 324 ~~pl--~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 324 SAPL--HAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred Ccch--hhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 1111 1112234456664 7888999999999999988765
No 132
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.55 E-value=3.5e-14 Score=145.36 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=149.4
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR 134 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~ 134 (807)
+.+++|+.+..+++..||.|.|||+ +...++.+++|++.+.||.++++|..|-|||-|.+||.||++.++ +...++..
T Consensus 514 ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S 593 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS 593 (705)
T ss_pred hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh
Confidence 4458899999999999999999999 456689999999999999999999999999999999999999854 44566666
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
.|.++..+|+ +.++++|-.++.+.+... .+.....++-|+.-|.++.|. |+++++. .|+-+..|...-|.
T Consensus 594 QIfSLg~cP~-----~dWlavGMens~vevlh~--skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 594 QIFSLGYCPT-----GDWLAVGMENSNVEVLHT--SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred hheecccCCC-----ccceeeecccCcEEEEec--CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 9999999999 899999999999876544 355566778899999999998 8887766 79999999998888
Q ss_pred eEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEE
Q 003625 212 RITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~ 253 (807)
.+...+... .+.++.. .++.++++| .|..-.||.+
T Consensus 667 siFqskE~S-------sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 667 SIFQSKESS-------SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeccccC-------cceeeeeccCceEEEecCCCcceEEEEE
Confidence 776543322 1323333 378888999 5557777765
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=1.7e-13 Score=148.94 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=154.4
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCC-eeEEe---cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEe
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGN-QVKEF---PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~-~~~~~---~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (807)
+.|++++|++.+.|++.|.|-+|+++.. ...++ .+|.++|++++.+.-++.++|++.+|.++.||..++... .+.
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 4568889999999999999999999644 44555 579999999999999999999999999999999886644 455
Q ss_pred cCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcC
Q 003625 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~ 208 (807)
...++.++..+.. +..++++..|-.|.++|.. ..+..+.+.+|.+.|++++|+ |++++++ .|++|++||+.
T Consensus 533 l~~~~~~iv~hr~-----s~l~a~~~ddf~I~vvD~~-t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 533 LGSSITGIVYHRV-----SDLLAIALDDFSIRVVDVV-TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred cCCCcceeeeeeh-----hhhhhhhcCceeEEEEEch-hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 5568888888887 7889999999999999875 456677889999999999999 8998888 79999999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eC-CcEEEEEEe
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WG-TYIKIASIK 254 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d-~~i~vw~~~ 254 (807)
++..+-.+.... ...++.++ ++.+|++. .| .-|++|.-+
T Consensus 607 t~~lID~~~vd~-------~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 607 TGTLIDGLLVDS-------PCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred CcceeeeEecCC-------cceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999987655443 34567775 78899999 44 569999654
No 134
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.54 E-value=3.7e-14 Score=142.45 Aligned_cols=187 Identities=14% Similarity=0.197 Sum_probs=146.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEec
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDY 132 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~ 132 (807)
..-|-++...|++|+.|..|++|+..+.. +.++.+..++|+++.|.+++.++++++.|+.+++|++..... .++.+
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG 259 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG 259 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc
Confidence 34577777899999999999999996554 567778888999999999999999999999999999998655 47899
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcCCC
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~~~ 210 (807)
|. .|+++.|... ...+++|+.|.++++||.. ...+.+++.. ...+..|..++..++++ .|+.|++||.++.
T Consensus 260 HtdkVt~ak~~~~-----~~~vVsgs~DRtiK~WDl~-k~~C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~ 332 (459)
T KOG0288|consen 260 HTDKVTAAKFKLS-----HSRVVSGSADRTIKLWDLQ-KAYCSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSA 332 (459)
T ss_pred cccceeeehhhcc-----ccceeeccccchhhhhhhh-hhheeccccc-cccccceEecceeeeecccccceEEEeccCC
Confidence 99 9999999876 3449999999999999886 2333333322 12345555556666677 7999999999999
Q ss_pred ceEEeeeCCCCCCCCCCCCCeeeee-CC-CEEEEEeCCcEEEEEEeeCC
Q 003625 211 QRITFIERPRGSPRPELLLPHLVWQ-DD-TLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~~~~l~~~-~~-~~l~~g~d~~i~vw~~~~~~ 257 (807)
.+...++.++ .+.++..+ ++ .++.++.|+++.+.|+++..
T Consensus 333 ~~~~sv~~gg-------~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 333 DKTRSVPLGG-------RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred ceeeEeecCc-------ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 9888876654 35566554 44 44555599999999998765
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.9e-13 Score=144.73 Aligned_cols=193 Identities=19% Similarity=0.247 Sum_probs=154.1
Q ss_pred CCCceEEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEE
Q 003625 53 ANDAASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKF 130 (807)
Q Consensus 53 ~~~~i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~ 130 (807)
.+..+++++..++.+++|+.+++|.+|... +..-.-+...+-++++++++.+|+++|.||.|-.|++-++.+ .....+
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 345578888889999999999999999984 333223444566899999999999999999999999999987 455678
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec--------CCcCeEEEEEe---CCEEEEEe
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--------GEGPVHVVKWR---TSLIAWAN 198 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~--------~~~~V~~l~~~---~~~la~~~ 198 (807)
.+|. +|.++.|+|+ +.++|+.+.||.|++|+.. ++....++.+ ....++.++|+ |++++.+.
T Consensus 135 rgh~apVl~l~~~p~-----~~fLAvss~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPK-----GNFLAVSSCDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred cccCCceeeeeEcCC-----CCEEEEEecCceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence 8888 9999999999 8999999999999999875 3332222221 13457788999 67888889
Q ss_pred CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEee
Q 003625 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~ 255 (807)
|+.|++|+..++.....+...... ...+.+.|+ .|.+|+++ -+|.|-|||+.+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~s----s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSS----SKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccc----cceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999998877765443211 226778996 78999998 899999999986
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.7e-12 Score=141.79 Aligned_cols=188 Identities=19% Similarity=0.224 Sum_probs=137.0
Q ss_pred EEEecCC----EEEEEecCCeEEEEecCC----Ce---eEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCc
Q 003625 59 CVAVAER----MIALGTHAGTVHILDFLG----NQ---VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE 126 (807)
Q Consensus 59 ~~s~~~~----~la~gs~dg~I~i~d~~~----~~---~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~ 126 (807)
.|.+.|. .||.|..||.|.+||... .. +.+...|++.|..+.|++.+. .+|+|+.||.|.|||+.+-+
T Consensus 71 ~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 71 AWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred eecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 5666444 599999999999999843 21 566778999999999999765 99999999999999998732
Q ss_pred -eeEEe---cCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC--CcCeEEEEEeC----CEEEE
Q 003625 127 -KMKFD---YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWRT----SLIAW 196 (807)
Q Consensus 127 -~~~~~---~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~--~~~V~~l~~~~----~~la~ 196 (807)
..+.. ....|.+++|+.. -.+.|++|+.+|.+.+||.+-. +.+..+..+ +..+..+.|++ +++++
T Consensus 151 tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 151 TPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred CCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeee
Confidence 22331 2228999999887 3689999999999999998733 333333333 34588999993 45555
Q ss_pred Ee-CC--cEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 197 AN-DA--GVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 197 ~~-d~--~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+. |+ .|.+||++.. ..++.+..|. .-+-++.|+ |.++++++ .|+.|.+|+..++.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H~------~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGHQ------RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcccc------cceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 53 33 5999998843 3444544443 347788996 55566655 99999999998866
No 137
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=1.6e-13 Score=147.35 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=131.3
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Eec
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY 132 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~ 132 (807)
|.| +||+|+++|+|--|.+|+||-++. +...++.+|.-||.|+.+|||+..++|||.|..|+||.++=|.|.+ +-+
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 555 788999999999999999999964 4467888999999999999999999999999999999999999984 777
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcC
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~ 208 (807)
|. .|.+|.|-|. ...|.++|.||.|+-||.. .-..++.+.+|...|+|++.. |.+++++ .|.+|++|...
T Consensus 591 HdDSvm~V~F~P~-----~~~FFt~gKD~kvKqWDg~-kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 591 HDDSVMSVQFLPK-----THLFFTCGKDGKVKQWDGE-KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ccCceeEEEEccc-----ceeEEEecCcceEEeechh-hhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 77 9999999998 8999999999999999764 346788899999999999988 7788888 69999999965
Q ss_pred CC
Q 003625 209 ND 210 (807)
Q Consensus 209 ~~ 210 (807)
..
T Consensus 665 de 666 (888)
T KOG0306|consen 665 DE 666 (888)
T ss_pred Cc
Confidence 43
No 138
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.2e-12 Score=126.14 Aligned_cols=197 Identities=9% Similarity=0.160 Sum_probs=145.8
Q ss_pred CCccccCCCc--e--EEEEecCCEEEEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 003625 47 SLPSLLANDA--A--SCVAVAERMIALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (807)
Q Consensus 47 ~~~~~~~~~~--i--~~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (807)
...+-|.+|. | .+++|-+..+++|+.|++|++||+.. +....+..-..+| ++|+|+|-.+|++...+.|++||
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYD 168 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEE
Confidence 3334455544 3 35788889999999999999999963 3333333333344 68999999999999888999999
Q ss_pred ccC---CceeEEec---CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC--e-EEEEEe-
Q 003625 122 LFT---DEKMKFDY---HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP--V-HVVKWR- 190 (807)
Q Consensus 122 ~~~---~~~~~~~~---~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~--V-~~l~~~- 190 (807)
++. |.-.++.. .. ..+.+.|+|+ |+.++.++..+.+.+.|. +.|.....+.++... + ....|.
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d-----GK~iLlsT~~s~~~~lDA-f~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPD-----GKSILLSTNASFIYLLDA-FDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEcCC-----CCEEEEEeCCCcEEEEEc-cCCcEeeeEeeccCCCCcceeEEECC
Confidence 987 33344322 23 8999999999 999999999998888876 467666666654322 2 345565
Q ss_pred -CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeC
Q 003625 191 -TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTN 256 (807)
Q Consensus 191 -~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~ 256 (807)
++++.++ .||+|.+|++.++..+..+..+. ...+.++.|++...+.++.+..+-+|-....
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-----~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-----GGPVSCVRFNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-----CCCccccccCCceeeeeecCceEEEEecccc
Confidence 7888888 68999999999999988876652 2346677898888888888889999976543
No 139
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.9e-12 Score=119.84 Aligned_cols=186 Identities=18% Similarity=0.283 Sum_probs=132.3
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCe------eEEecCCCcceeEEEEc----------------------------
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQ------VKEFPAHTAAVNDLSFD---------------------------- 102 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~------~~~~~~h~~~V~~l~~s---------------------------- 102 (807)
.+||+|+|++||+|++|.+|++...+... -..+.-|.+.|..++|-
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 45699999999999999999987552111 12333444444444442
Q ss_pred ------------------CCCCEEEEEeCCCcEEEEeccCCceeE-E----ec-C---CceEEEEeCCCCCCcCCCEEEE
Q 003625 103 ------------------VDGEYVGSCSDDGSVVINSLFTDEKMK-F----DY-H---RPMKAISLDPDYTRKMSRRFVA 155 (807)
Q Consensus 103 ------------------~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~----~~-~---~~v~~v~~~p~~~~~~~~~l~~ 155 (807)
=+|-.+++|+.|.+|+.||++-..+.. + .. . ..|.+|+.+|. |+++++
T Consensus 174 ~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps-----grll~s 248 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS-----GRLLAS 248 (350)
T ss_pred CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC-----cceeee
Confidence 146678999999999999998755542 2 11 1 27999999999 999999
Q ss_pred ecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCcEEEEEcCCCc----eEEeeeCCCCCCCCCCC
Q 003625 156 GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAANDQ----RITFIERPRGSPRPELL 228 (807)
Q Consensus 156 g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~v~iwd~~~~~----~~~~i~~~~~~~~~~~~ 228 (807)
|-.|....+|+.+ .++.++.++.|...|.|+.|++ .++.++ .|..|++-|+...- ++..+..+.. .
T Consensus 249 g~~dssc~lydir-g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd------k 321 (350)
T KOG0641|consen 249 GHADSSCMLYDIR-GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD------K 321 (350)
T ss_pred ccCCCceEEEEee-CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC------c
Confidence 9999999999987 5788899999999999999993 566655 79999999987431 2222222221 2
Q ss_pred CCeeeeeCC--CEEEEEeCCcEEEEEEe
Q 003625 229 LPHLVWQDD--TLLVIGWGTYIKIASIK 254 (807)
Q Consensus 229 ~~~l~~~~~--~~l~~g~d~~i~vw~~~ 254 (807)
.-.+.|... .++.++.|.++.+|-+.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 335667533 33334488999999653
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.50 E-value=7.7e-13 Score=135.59 Aligned_cols=186 Identities=16% Similarity=0.235 Sum_probs=145.9
Q ss_pred cCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC--ceEE
Q 003625 63 AERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR--PMKA 138 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~--~v~~ 138 (807)
...++++|+..|.|+|||+..+. .+.++.|.+.|+++.++-...+||+++..|.|.|..+.++.. ..+.... .|..
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 34689999999999999997555 466788999999999999999999999999999999988554 3565553 7889
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEE-EeCCcEEEEEcCCCceEE
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAW-ANDAGVKVYDAANDQRIT 214 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~-~~d~~v~iwd~~~~~~~~ 214 (807)
+.++|. .-.++.+++.+|.|.+||..-..........|..|..+|+|+ ..++++ |.|..|.+||+++.....
T Consensus 170 l~ys~s----kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 170 LRYSPS----KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eecccc----cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 999998 345788899999999999853223334445699999999999 344544 479999999999766554
Q ss_pred eeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 215 FIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 215 ~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
.+.- ......++|. +|.+|++| ..|.|..||++....+
T Consensus 246 ~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 246 RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 3322 1235678885 77888888 8999999999976633
No 141
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.50 E-value=2.9e-12 Score=121.62 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=152.5
Q ss_pred CCCceeeeecCCCCccccCC-Cc-eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEe
Q 003625 35 EEPRLKYQRMGGSLPSLLAN-DA-ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS 112 (807)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~~-~~-i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~ 112 (807)
...++|..|.+.....+-.+ +. ..+|+|+|+++++|+.|..|.+.|.....+..-......++-++|+.+++.++-..
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec
Confidence 34455555555554444333 22 46799999999999999999999985544333333445678889998888887777
Q ss_pred CCCcEEEEeccC-CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe
Q 003625 113 DDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (807)
Q Consensus 113 ~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~ 190 (807)
..|+|.|..... ..+..++.|. ...||.|+|+ |++|++|+.|..+.+||.. ..-+.+.+..++-||..+.|+
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-----GryfA~GsADAlvSLWD~~-ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-----GRYFATGSADALVSLWDVD-ELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCC-----CceEeeccccceeeccChh-HhhhheeeccccCceEEEEec
Confidence 789999998877 5566789998 9999999999 9999999999999999886 345677788889999999999
Q ss_pred --CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCC-CEEEEE
Q 003625 191 --TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDD-TLLVIG 243 (807)
Q Consensus 191 --~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~l~~g 243 (807)
|+++|++ .|..|-|=++.+|..+..++... ....++|.+. .+|+-+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~-------~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCEG-------PTFTVAWHPKRPLLAYA 290 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEeeccC-------CceeEEecCCCceeeEE
Confidence 9999999 58899999999999888765543 3567999754 455555
No 142
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.48 E-value=5.8e-13 Score=133.11 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=138.5
Q ss_pred EecCCEEEEE---ecCCeEEEEec--CCCe---eEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCC------
Q 003625 61 AVAERMIALG---THAGTVHILDF--LGNQ---VKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTD------ 125 (807)
Q Consensus 61 s~~~~~la~g---s~dg~I~i~d~--~~~~---~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~------ 125 (807)
+.++++||+. +..|...+.-+ .|+. ...+.+|+++|..++|+| +...|||||.|.+|.||.+..+
T Consensus 41 avNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l 120 (472)
T KOG0303|consen 41 AVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL 120 (472)
T ss_pred ccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc
Confidence 3467777663 33344444444 2433 345678999999999999 4567999999999999998652
Q ss_pred --ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eC
Q 003625 126 --EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND 199 (807)
Q Consensus 126 --~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d 199 (807)
.+..+.+|. .|..|+|||. ..+.+++++.|.+|.+|+.. ++...-.+. |...|.++.|+ |.+++++ .|
T Consensus 121 tepvv~L~gH~rrVg~V~wHPt----A~NVLlsag~Dn~v~iWnv~-tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 121 TEPVVELYGHQRRVGLVQWHPT----APNVLLSAGSDNTVSIWNVG-TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred ccceEEEeecceeEEEEeeccc----chhhHhhccCCceEEEEecc-CCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 244578888 9999999998 36899999999999999986 455544555 99999999999 7777766 79
Q ss_pred CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE----eCCcEEEEEEeeCC
Q 003625 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG----WGTYIKIASIKTNQ 257 (807)
Q Consensus 200 ~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g----~d~~i~vw~~~~~~ 257 (807)
..|||||.++++.+..-..|.+. ......| .++.++.+| .+..+-+|+...-.
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~-----k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGA-----KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCC-----CcceeEEeccCceeeeccccccccceeccCccccc
Confidence 99999999999988875444322 2445666 466777777 34568899876544
No 143
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.6e-12 Score=126.49 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=128.5
Q ss_pred CceEEEEe-cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEec
Q 003625 55 DAASCVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDY 132 (807)
Q Consensus 55 ~~i~~~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~ 132 (807)
.++.++++ +...+++|+.||.|+.+|+++.....+..|..+|.|+..++....+++||.|++|++||.+.... ..+..
T Consensus 55 ~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 55 APLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred CceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 45666655 56789999999999999998887778888999999999999888999999999999999884110 01111
Q ss_pred C-----------------------------------------C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC
Q 003625 133 H-----------------------------------------R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (807)
Q Consensus 133 ~-----------------------------------------~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (807)
. + .++||++-|+ +.-+++++-+|.|.+=.....
T Consensus 135 ~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn-----~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 135 GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN-----GEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred CceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecC-----CCceEEEeecceEEEEccCCc
Confidence 1 1 4566777676 556666777776654322211
Q ss_pred ---CccceEeecCC---------cCeEEEEEeC---CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee
Q 003625 171 ---GYRDQVLHSGE---------GPVHVVKWRT---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ 235 (807)
Q Consensus 171 ---~~~~~~~~~~~---------~~V~~l~~~~---~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 235 (807)
..+...+..|. -||++++|++ .+..+++||.|.+||..+++.+..+..-. ..+.+++|+
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~------~SI~slsfs 283 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE------TSISSLSFS 283 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC------CceEEEEec
Confidence 13334455553 4799999993 45555589999999999988887654432 236678885
Q ss_pred -CCCEEEEEeC
Q 003625 236 -DDTLLVIGWG 245 (807)
Q Consensus 236 -~~~~l~~g~d 245 (807)
+|..||+|.+
T Consensus 284 ~dG~~LAia~s 294 (323)
T KOG1036|consen 284 MDGSLLAIASS 294 (323)
T ss_pred cCCCeEEEEec
Confidence 8889998843
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=9.2e-12 Score=120.94 Aligned_cols=164 Identities=19% Similarity=0.300 Sum_probs=121.9
Q ss_pred cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC--c--e-eEEecCC-ceEEEEe-CCCCCCcCCCEEEEecCCCeE
Q 003625 90 PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--E--K-MKFDYHR-PMKAISL-DPDYTRKMSRRFVAGGLAGHL 162 (807)
Q Consensus 90 ~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~--~-~~~~~~~-~v~~v~~-~p~~~~~~~~~l~~g~~dg~v 162 (807)
.+|.+-|+++.|++.|+++|||+.|++|+|||..+. . + ..+..|. .|..|.| +|.| |+.+++++.|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEf----GqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEF----GQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccc----cceEEEEecCCce
Confidence 358889999999999999999999999999997542 2 2 3577788 9999999 6776 8999999999999
Q ss_pred EEEEcccCC--------ccceEeecCCcCeEEEEEe----CCEEEEE-eCCcEEEEEcCCCceEEe------eeCC-CCC
Q 003625 163 YLNSKKWLG--------YRDQVLHSGEGPVHVVKWR----TSLIAWA-NDAGVKVYDAANDQRITF------IERP-RGS 222 (807)
Q Consensus 163 ~l~~~~~~~--------~~~~~~~~~~~~V~~l~~~----~~~la~~-~d~~v~iwd~~~~~~~~~------i~~~-~~~ 222 (807)
.+|.-.... ...+++....+.|+.++|. |-.+|++ .||.+|||+...-.-+.. +... ...
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999642111 2345666778999999999 6667766 799999998764322221 2111 111
Q ss_pred CCCCCCCCeeeee----CCCEEEEEeCC------cEEEEEEeeCC
Q 003625 223 PRPELLLPHLVWQ----DDTLLVIGWGT------YIKIASIKTNQ 257 (807)
Q Consensus 223 ~~~~~~~~~l~~~----~~~~l~~g~d~------~i~vw~~~~~~ 257 (807)
..+.....|+.|+ ....+++|.+. .++||....++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~ 210 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG 210 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc
Confidence 2234456688997 45689999776 79999887665
No 145
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.6e-12 Score=125.56 Aligned_cols=225 Identities=17% Similarity=0.201 Sum_probs=158.5
Q ss_pred CEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcC--CCCEEEEEeCCCcEEEEeccC-Ccee--EEecCC--ce
Q 003625 65 RMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFT-DEKM--KFDYHR--PM 136 (807)
Q Consensus 65 ~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~-~~~~--~~~~~~--~v 136 (807)
+.+|+|.++|.|++||. +|+.+..+++|...++.+.|.. ..+-+.+|+.||+|++||+++ ++.. .+..+. +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 67899999999999999 5777899999999999999976 567799999999999999998 3332 344444 77
Q ss_pred EEEEeCCCCCCcCCCEEEEecC----CCeEEEEEcccCCc-cceEeecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEc
Q 003625 137 KAISLDPDYTRKMSRRFVAGGL----AGHLYLNSKKWLGY-RDQVLHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDA 207 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~----dg~v~l~~~~~~~~-~~~~~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~ 207 (807)
.|++.... ++.+++|+. +-.|.+||.+...+ .......|...|++++|+ +++++++ .||-|.+||+
T Consensus 121 ~~ld~nck-----~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLDLNCK-----KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEeeccCc-----CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 78877656 688888843 55699999874444 233445699999999999 6788887 6999999999
Q ss_pred CCCceEEeeeCCCCCCCCCCCCCeeeee-CC--CEEEEEeCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceE
Q 003625 208 ANDQRITFIERPRGSPRPELLLPHLVWQ-DD--TLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYY 284 (807)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~--~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (807)
.....--.+ ....++...+.++.|. ++ ++.+....++..+|++..+......+.+. ............++.
T Consensus 196 ~~d~EeDaL---~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~---~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 196 KKDNEEDAL---LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD---VSADDLRKEDNCDYV 269 (376)
T ss_pred CCCcchhhH---HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc---chhhhHHhhhhhhhe
Confidence 754211100 0122344457788896 44 56666699999999999877332211110 011122334566788
Q ss_pred EEeeeecCCceEEEEe
Q 003625 285 ISGIAPFGDCLVVLAY 300 (807)
Q Consensus 285 i~gi~~~~~~l~vl~~ 300 (807)
|.+..+-+..+..++.
T Consensus 270 I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAG 285 (376)
T ss_pred eecccCCCcceEEEec
Confidence 8888887755555554
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.46 E-value=4.8e-13 Score=130.81 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=144.0
Q ss_pred eEEEEec----CCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCceeE-
Q 003625 57 ASCVAVA----ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKMK- 129 (807)
Q Consensus 57 i~~~s~~----~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~~- 129 (807)
.++|+.+ .-++|+|+.-|.|+|.|+ ++.....+.+|...|+.+.+.|+. +++++||.|..|++|++++..+..
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE
Confidence 3446653 338999999999999999 566678899999999999999975 689999999999999999988764
Q ss_pred ---EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC-------------Ccc--------ce------Eee
Q 003625 130 ---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-------------GYR--------DQ------VLH 178 (807)
Q Consensus 130 ---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-------------~~~--------~~------~~~ 178 (807)
+.+|+ .|.++.|+++ +..|+++|.|.++++|+.... ..+ .. +-.
T Consensus 174 fGG~egHrdeVLSvD~~~~-----gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLD-----GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred ecccccccCcEEEEEEcCC-----CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 36788 9999999999 899999999999999975310 000 01 112
Q ss_pred cCCcCeEEEEEeCCEEEEE-eCCcEEEEEc-CCCceEEeeeCCCCCC---CCCCCCCe----eeee---CCCEEEEE-eC
Q 003625 179 SGEGPVHVVKWRTSLIAWA-NDAGVKVYDA-ANDQRITFIERPRGSP---RPELLLPH----LVWQ---DDTLLVIG-WG 245 (807)
Q Consensus 179 ~~~~~V~~l~~~~~~la~~-~d~~v~iwd~-~~~~~~~~i~~~~~~~---~~~~~~~~----l~~~---~~~~l~~g-~d 245 (807)
-|...|-|+.|-|+++.+- .++.|..|-. .-++.+..+.++.... +.-.+..+ +.|. -..+|+.| ..
T Consensus 249 iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 249 IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCC
Confidence 3778889999999888776 5889999987 2233322332322110 00111122 2222 45678888 89
Q ss_pred CcEEEEEEeeCCCc
Q 003625 246 TYIKIASIKTNQSN 259 (807)
Q Consensus 246 ~~i~vw~~~~~~~~ 259 (807)
|.|.+||++...+.
T Consensus 329 g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPP 342 (385)
T ss_pred CcEEEEECCCCCCc
Confidence 99999999987643
No 147
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=134.71 Aligned_cols=176 Identities=16% Similarity=0.224 Sum_probs=134.8
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE-ecCCceEEEEeCC
Q 003625 65 RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-DYHRPMKAISLDP 143 (807)
Q Consensus 65 ~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~~~~~v~~v~~~p 143 (807)
..++++++||.+.|.+..++.-+.+.+|.++|.+-.|+|+|.-++|+|.||.|++|.-.+-...++ +...+|.|++|.|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 478899999999999999988888999999999999999999999999999999998654222233 3344999999999
Q ss_pred CCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCC
Q 003625 144 DYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPR 220 (807)
Q Consensus 144 ~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~ 220 (807)
+ +++.+.+.+. .+.+-... ...+.-....|+|-|.++.|+ .++++++ .|-..+|||-. |+.+..
T Consensus 156 ~----S~~vl~c~g~--h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~----- 222 (737)
T KOG1524|consen 156 N----SNSIVFCQGG--HISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFT----- 222 (737)
T ss_pred C----CCceEEecCC--eEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Cccccc-----
Confidence 9 3344444433 55443222 234555677899999999999 6788877 69999999975 444443
Q ss_pred CCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEe
Q 003625 221 GSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIK 254 (807)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~ 254 (807)
+..++..+++++|+++..+++|.-++.++=..+
T Consensus 223 -S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~ 255 (737)
T KOG1524|consen 223 -SAAEEYAITSVAFNPEKDYLLWSYNTARFSSPR 255 (737)
T ss_pred -CChhccceeeeeeccccceeeeeeeeeeecCCC
Confidence 344566789999998888999988888744333
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=2.6e-12 Score=137.20 Aligned_cols=191 Identities=18% Similarity=0.277 Sum_probs=137.9
Q ss_pred EEEecCCEEEEEecC-----CeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee----
Q 003625 59 CVAVAERMIALGTHA-----GTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---- 128 (807)
Q Consensus 59 ~~s~~~~~la~gs~d-----g~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---- 128 (807)
+++|+|+++|+++.. ..|++|+... ..++.+.+|+-.|+.++|||||++|+++|.|.++.+|.......-
T Consensus 532 ~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 532 AISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred EecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh
Confidence 467789999998754 4689999854 345678999999999999999999999999999999988653321
Q ss_pred -EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC--Cccce-EeecCCcCeEEEEEe-------CCEEEE
Q 003625 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL--GYRDQ-VLHSGEGPVHVVKWR-------TSLIAW 196 (807)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~--~~~~~-~~~~~~~~V~~l~~~-------~~~la~ 196 (807)
..+.|+ -|+++.|+|+ +.+|+|++.|.+|++|...-. ..... ....+..+|++++|. +.+++.
T Consensus 612 a~~k~HtRIIWdcsW~pd-----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vav 686 (764)
T KOG1063|consen 612 ACLKAHTRIIWDCSWSPD-----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAV 686 (764)
T ss_pred ccccccceEEEEcccCcc-----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEE
Confidence 256677 8999999999 888999999999999976422 11111 233467899999998 247777
Q ss_pred E-eCCcEEEEEcCCC-ceE----Eee-eCCCCCCCCCCCCCeeeee-----------CCCEEEEE-eCCcEEEEEEe
Q 003625 197 A-NDAGVKVYDAAND-QRI----TFI-ERPRGSPRPELLLPHLVWQ-----------DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 197 ~-~d~~v~iwd~~~~-~~~----~~i-~~~~~~~~~~~~~~~l~~~-----------~~~~l~~g-~d~~i~vw~~~ 254 (807)
| ..|.|.+|..... +.. ..+ ........+...+..+.|. ....|++| .|.+++++++.
T Consensus 687 Gle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 687 GLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 7 6899999996511 100 111 1111234455556777775 12345666 88889998864
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=132.45 Aligned_cols=187 Identities=11% Similarity=0.196 Sum_probs=146.6
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC--
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-- 134 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-- 134 (807)
.+++++++|++.+..|.|++.... +..+.+++ -.+.|..++|+.+|+.|++++.+|.|.+||++...+. ++....
T Consensus 310 eVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 310 EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred EecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 467899999999999999999885 44455554 5567999999999999999999999999999997765 454433
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC--C---ccceEeecCCcCeEEEEEe--CCEEEEE---eCCcEEE
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL--G---YRDQVLHSGEGPVHVVKWR--TSLIAWA---NDAGVKV 204 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~--~---~~~~~~~~~~~~V~~l~~~--~~~la~~---~d~~v~i 204 (807)
.-++++.+++ +.+||+|+..|.|.||+...- . ++++.+..-...|+++.|+ ++++|.+ ....+|+
T Consensus 389 ~gts~~~S~n-----g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrL 463 (514)
T KOG2055|consen 389 HGTSLCISLN-----GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRL 463 (514)
T ss_pred ceeeeeecCC-----CceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEE
Confidence 5567777788 899999999999999985311 1 3344444456789999999 5777655 4788999
Q ss_pred EEcCCCceEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEE-eCCcEEEEEEe
Q 003625 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 205 wd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~ 254 (807)
..+.+......++..... ...+.|++|+. +.++++| .+|.+.+|.+.
T Consensus 464 VHvPS~TVFsNfP~~n~~---vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 464 VHVPSCTVFSNFPTSNTK---VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EeccceeeeccCCCCCCc---ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999988777766655433 33588999984 8899999 89999999874
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.1e-10 Score=124.94 Aligned_cols=210 Identities=16% Similarity=0.147 Sum_probs=149.1
Q ss_pred EEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE---EecC
Q 003625 58 SCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---FDYH 133 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~~ 133 (807)
.||+ .+..|.+.+.+|.|.-||+ ++++...+....++|++++.+|.+..++.|++||.+..++...+++.. +...
T Consensus 75 L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq 153 (691)
T KOG2048|consen 75 LAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ 153 (691)
T ss_pred EEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc
Confidence 3566 3556668889999999999 677778888888999999999999999999999977777777766542 3333
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEe-------ec-CCcCeEEEEEe-CCEEEEE-eCCcE
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-------HS-GEGPVHVVKWR-TSLIAWA-NDAGV 202 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~-------~~-~~~~V~~l~~~-~~~la~~-~d~~v 202 (807)
+ .|.+++|+|+ +..+++|+.||.|++||.. .+...... .. ...-|+++.|- ...++++ +.|+|
T Consensus 154 ~sRvLslsw~~~-----~~~i~~Gs~Dg~Iriwd~~-~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V 227 (691)
T KOG2048|consen 154 KSRVLSLSWNPT-----GTKIAGGSIDGVIRIWDVK-SGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTV 227 (691)
T ss_pred cceEEEEEecCC-----ccEEEecccCceEEEEEcC-CCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceE
Confidence 3 8999999999 7889999999999999875 23222211 11 12224455444 6667777 89999
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEE-EeCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEee
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVI-GWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQ 280 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~-g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 280 (807)
.+||...+..+..+..+. .-+.+++-. ++..+++ |-|+.|.-+...++.........+..+...+.....+.
T Consensus 228 ~FWd~~~gTLiqS~~~h~------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 228 TFWDSIFGTLIQSHSCHD------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEcccCcchhhhhhhhh------cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999998877655443 236666664 3345554 48999888888777654333444445555554444443
No 151
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=7.3e-13 Score=131.03 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=126.8
Q ss_pred EEEEecC-CCeeEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCE
Q 003625 76 VHILDFL-GNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRR 152 (807)
Q Consensus 76 I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~ 152 (807)
|.|||.. ..++.++.--...|.++.|+|... .|++|+.|+.|.+||++.+... ++...-.-+.++|+|. +-.
T Consensus 169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe-----afn 243 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPE-----AFN 243 (433)
T ss_pred eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcc-----ccc
Confidence 4444442 233444444456778888888765 4677779999999999986554 3333336678999998 789
Q ss_pred EEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCC
Q 003625 153 FVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLL 229 (807)
Q Consensus 153 l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~ 229 (807)
|++|+.|.+++.+|.+....+..+..+|-++|..+.|+ |+-++++ -|.+|+||..+.+......... . -..+
T Consensus 244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--R---Mq~V 318 (433)
T KOG0268|consen 244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--R---MQHV 318 (433)
T ss_pred eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--h---hhee
Confidence 99999999999999988888899999999999999999 6555555 7999999999866543221111 1 1236
Q ss_pred Ceeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 230 PHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 230 ~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
.++.|+ |.+++++| .|+.|++|.-+..
T Consensus 319 ~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eEEEEeccccEEEecCCCcceeeeecchh
Confidence 789997 88899999 7778999986643
No 152
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.43 E-value=7.7e-12 Score=121.20 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=121.1
Q ss_pred cCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccC-Ccee--EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 90 PAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFT-DEKM--KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 90 ~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~-~~~~--~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
....+.|.+++||| ...++++||-||+||+|++.. +... ....+. ||.+++|+.+ |..+++|+.|+.+++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-----gskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-----GSKVFSGGCDKQAKL 98 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-----CceEEeeccCCceEE
Confidence 34667899999999 455667899999999999987 3433 344455 9999999999 899999999999999
Q ss_pred EEcccCCccceEeecCCcCeEEEEEeC----CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCE
Q 003625 165 NSKKWLGYRDQVLHSGEGPVHVVKWRT----SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTL 239 (807)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~V~~l~~~~----~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~ 239 (807)
||.. ......+..|.++|.++.|-+ ..++++ -|.+++.||.+...++.++..|.. +.++.. ...+
T Consensus 99 wDL~--S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-------vYa~Dv-~~pm 168 (347)
T KOG0647|consen 99 WDLA--SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-------VYAADV-LYPM 168 (347)
T ss_pred EEcc--CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-------eeehhc-cCce
Confidence 9985 346777888999999999982 356777 599999999999999998888763 222211 3456
Q ss_pred EEEE-eCCcEEEEEEeeCC
Q 003625 240 LVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 240 l~~g-~d~~i~vw~~~~~~ 257 (807)
++++ .+..|.+|++..+.
T Consensus 169 ~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 169 AVVATAERHIAVYNLENPP 187 (347)
T ss_pred eEEEecCCcEEEEEcCCCc
Confidence 6777 88889999997654
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.43 E-value=5.6e-12 Score=133.44 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=133.5
Q ss_pred CCEEEEEecCCeEEEEecCCCe-------eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee---EEecC
Q 003625 64 ERMIALGTHAGTVHILDFLGNQ-------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDYH 133 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~~-------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~~ 133 (807)
...|+++..+|.|.++|..... +..+.+|...|.++.|.|....|++++.|.+++.||+.++.+. .+.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 5589999999999999984322 3566789999999999997778999999999999999986654 35677
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC--------------ccc-----eEe-------ecC----Cc
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG--------------YRD-----QVL-------HSG----EG 182 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~--------------~~~-----~~~-------~~~----~~ 182 (807)
. .|.+++|+|. +...|++|+.||.|.|||.+-.+ .+. +.+ ..+ .+
T Consensus 144 ~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 144 TGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 7 9999999998 57899999999999999865333 000 000 011 13
Q ss_pred CeEEEEEe-CCEEEEE--eCCcEEEEEcCCCceEEeeeCCCCC--CCC-CCC--CCeeeee--CCCEEEEEeCCcEEEEE
Q 003625 183 PVHVVKWR-TSLIAWA--NDAGVKVYDAANDQRITFIERPRGS--PRP-ELL--LPHLVWQ--DDTLLVIGWGTYIKIAS 252 (807)
Q Consensus 183 ~V~~l~~~-~~~la~~--~d~~v~iwd~~~~~~~~~i~~~~~~--~~~-~~~--~~~l~~~--~~~~l~~g~d~~i~vw~ 252 (807)
.|+.+.|. ...||++ .|+.|+|||++.............. +.+ ... ..++... ...++|.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 46667776 4556655 4999999999977655433222111 111 011 1223222 34455666999999999
Q ss_pred EeeCC
Q 003625 253 IKTNQ 257 (807)
Q Consensus 253 ~~~~~ 257 (807)
+.+-.
T Consensus 300 m~s~s 304 (720)
T KOG0321|consen 300 MRSLS 304 (720)
T ss_pred ccccC
Confidence 98754
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=3.6e-12 Score=127.54 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=134.5
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecC-C-------CeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCcee
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFL-G-------NQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~-~-------~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~ 128 (807)
.|+| +.+.||+||.|.+|.||.+. + .++..+.+|...|..+.|+|.. +.|+|+|.|.+|.+||+.+++..
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal 167 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL 167 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee
Confidence 5888 57799999999999999983 2 2367789999999999999974 57899999999999999998755
Q ss_pred -EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCc--CeEEEEEe-CCEEEEE----eC
Q 003625 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG--PVHVVKWR-TSLIAWA----ND 199 (807)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~--~V~~l~~~-~~~la~~----~d 199 (807)
++. |. -|.++.|+.+ |.++++.+.|..|++|+.+ .+.....-.+|.| +...+-.. |.++.++ ++
T Consensus 168 i~l~-hpd~i~S~sfn~d-----Gs~l~TtckDKkvRv~dpr-~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~se 240 (472)
T KOG0303|consen 168 ITLD-HPDMVYSMSFNRD-----GSLLCTTCKDKKVRVIDPR-RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSE 240 (472)
T ss_pred eecC-CCCeEEEEEeccC-----CceeeeecccceeEEEcCC-CCcEeeecccccCCCcceeEEeccCceeeeccccccc
Confidence 455 66 9999999999 9999999999999999987 4444444445654 34444333 6766665 47
Q ss_pred CcEEEEEcCCCc-eEE--eeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 200 AGVKVYDAANDQ-RIT--FIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 200 ~~v~iwd~~~~~-~~~--~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+.+-+||..+-. ++. .+...++ +----|. .+-+.++| .|+.|+.|.+....
T Consensus 241 Rq~aLwdp~nl~eP~~~~elDtSnG-------vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 241 RQIALWDPNNLEEPIALQELDTSNG-------VLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cceeccCcccccCcceeEEeccCCc-------eEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 889999976432 222 2222211 1111122 33455677 89999999987654
No 155
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=8.3e-12 Score=129.29 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=130.9
Q ss_pred EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC-ceE
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMK 137 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~ 137 (807)
|+|+|.-+++.+.||.|++|..+|....++.....+|.|++|.|+++.++-|.. |.+.|=.+.. .++..+..|. -|.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL 190 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVL 190 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEE
Confidence 999999999999999999999998876666667779999999999988776643 5677766655 5677888888 999
Q ss_pred EEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC-CEEEEEeCCcEEEEEcCCCceEEee
Q 003625 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT-SLIAWANDAGVKVYDAANDQRITFI 216 (807)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~-~~la~~~d~~v~iwd~~~~~~~~~i 216 (807)
++.|+|. ++.+++||.|-..++||. .|.....-..|+-+|++++|++ ...+.++-++.| +
T Consensus 191 ~~~W~~~-----s~lI~sgGED~kfKvWD~--~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R------------~ 251 (737)
T KOG1524|consen 191 SLSWSTQ-----SNIIASGGEDFRFKIWDA--QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR------------F 251 (737)
T ss_pred EeecCcc-----ccceeecCCceeEEeecc--cCcccccCChhccceeeeeeccccceeeeeeeeee------------e
Confidence 9999999 899999999999999987 4676666777899999999994 444444444444 2
Q ss_pred eCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEE
Q 003625 217 ERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~ 253 (807)
+.|. ...+..++|+ +|..+++| ..|.+.+-.+
T Consensus 252 ~~p~-----~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 252 SSPR-----VGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred cCCC-----ccceEEEEEcCCCceeeccccCceEEEeee
Confidence 2221 1135678997 88888888 6666544433
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4.6e-12 Score=123.34 Aligned_cols=183 Identities=12% Similarity=0.185 Sum_probs=143.2
Q ss_pred EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC---C------ceeEE
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT---D------EKMKF 130 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~---~------~~~~~ 130 (807)
++-++.+|++++.|..|.+|++.|+.+.++......-+..+.||+|+++++++--..|++|..-- | ++..+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 34467799999999999999999999988888777778889999999999999999999998632 2 23467
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC---CccceEeec-------CCcCeEEEEEe--CCEEEEE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL---GYRDQVLHS-------GEGPVHVVKWR--TSLIAWA 197 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~---~~~~~~~~~-------~~~~V~~l~~~--~~~la~~ 197 (807)
.+|. .|...+|+|+ +..+++.+.||++++|+...- ++-..++.. ..+.-..+..+ |+.+|.+
T Consensus 275 kGH~saV~~~aFsn~-----S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNS-----STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred ccchhheeeeeeCCC-----cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 8899 9999999999 899999999999999975421 111222221 12222356666 7999999
Q ss_pred eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEE
Q 003625 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIAS 252 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~ 252 (807)
....+++|..++++....++.. |...+.+++|+ +|.+++++.|..++++.
T Consensus 350 ~gs~l~~~~se~g~~~~~~e~~-----h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 350 FGSDLKVFASEDGKDYPELEDI-----HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred cCCceEEEEcccCccchhHHHh-----hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 8889999999988766554332 34468899995 88999999999999875
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.42 E-value=1.5e-12 Score=138.85 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=144.0
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcC---CCCEEEEEeCCCcEEEEeccCC--ceeEE
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDV---DGEYVGSCSDDGSVVINSLFTD--EKMKF 130 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~---~g~~l~s~~~Dg~v~iwd~~~~--~~~~~ 130 (807)
..|++|+|++||+|..-|+++||++. ......+.+|.+.|.|+.++. ..+.||+++.|..|.|+|+... .+.++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 45789999999999999999999994 444567788999999999985 3567999999999999997542 11122
Q ss_pred ecCC--------------------------------------------------ceEEEEeCCCCCCcCCCEEEEecCCC
Q 003625 131 DYHR--------------------------------------------------PMKAISLDPDYTRKMSRRFVAGGLAG 160 (807)
Q Consensus 131 ~~~~--------------------------------------------------~v~~v~~~p~~~~~~~~~l~~g~~dg 160 (807)
.+|. .+..++..|+ .+++++++.|.
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-----~k~v~t~cQDr 618 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT-----SKLVVTVCQDR 618 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC-----cceEEEEeccc
Confidence 2222 3445666666 68899999999
Q ss_pred eEEEEEcccCCccceEeec---CCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee
Q 003625 161 HLYLNSKKWLGYRDQVLHS---GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW 234 (807)
Q Consensus 161 ~v~l~~~~~~~~~~~~~~~---~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (807)
+|++|+.. .++..+.+++ |+|....+... |.+++++ +|.++.++|..+++++.....|. ..++.+.|
T Consensus 619 nirif~i~-sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs------E~VTG~kF 691 (1080)
T KOG1408|consen 619 NIRIFDIE-SGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS------EAVTGVKF 691 (1080)
T ss_pred ceEEEecc-ccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc------hheeeeee
Confidence 99999886 5677777765 55666666666 7899988 89999999999999998865554 34777888
Q ss_pred e-CCCEEEEE-eCCcEEEEEEee
Q 003625 235 Q-DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 235 ~-~~~~l~~g-~d~~i~vw~~~~ 255 (807)
. +-+.|++. .||+|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 5 33445544 999999999854
No 158
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.41 E-value=3.9e-11 Score=114.35 Aligned_cols=157 Identities=19% Similarity=0.304 Sum_probs=126.4
Q ss_pred EecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEE
Q 003625 88 EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (807)
Q Consensus 88 ~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (807)
.+++|..+++.+.++.+|..|.||+.|.+..+|-..+|+ +-++.+|+ .|+|+..+.+ ++.+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-----s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-----SKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-----cceeeeccccceeEEE
Confidence 467899999999999999999999999999999876655 55899999 9999999988 8999999999999999
Q ss_pred EcccCCccceEeecCCcCeEEEEEe--CCEEEEEeC------CcEEEEEcC-------CCceEEeeeCCCCCCCCCCCCC
Q 003625 166 SKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAND------AGVKVYDAA-------NDQRITFIERPRGSPRPELLLP 230 (807)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d------~~v~iwd~~-------~~~~~~~i~~~~~~~~~~~~~~ 230 (807)
|.. .|+....+. ...+|..+.|+ |++++.+.| +.|.++|++ +..+...+..+. ..+.
T Consensus 80 Dv~-tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------skit 151 (327)
T KOG0643|consen 80 DVE-TGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------SKIT 151 (327)
T ss_pred EcC-CCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------ccee
Confidence 986 455544443 45689999999 777766643 458999998 334444544443 3467
Q ss_pred eeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 231 HLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 231 ~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+.|. -+..+++| .+|.|..||++++.
T Consensus 152 ~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 78885 67788888 89999999999875
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=4.8e-12 Score=132.47 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=138.0
Q ss_pred EEEecCCEEEEEecCCeEEEEecC---------CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC----
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL---------GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD---- 125 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~---------~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~---- 125 (807)
.+.+....|++|+.||++.+|++. -.++.+|++|.++|.|++.+++++++.+||.||+|+.|++...
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ 380 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD 380 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc
Confidence 566777899999999999999982 1236889999999999999999999999999999999966421
Q ss_pred ---c----eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc-------------------------
Q 003625 126 ---E----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY------------------------- 172 (807)
Q Consensus 126 ---~----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~------------------------- 172 (807)
+ ...+.+|. .|+.+++|+. ...+++++.||++++|...-...
T Consensus 381 ds~dp~vl~~~l~Ghtdavw~l~~s~~-----~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 381 DSYDPSVLSGTLLGHTDAVWLLALSST-----KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred cccCcchhccceeccccceeeeeeccc-----ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 1 12467888 9999999998 67899999999999996321000
Q ss_pred ------------------cceEeecC--C-----cCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCC
Q 003625 173 ------------------RDQVLHSG--E-----GPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR 224 (807)
Q Consensus 173 ------------------~~~~~~~~--~-----~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~ 224 (807)
...++... . ..+.-+.++ +.+..++ .|++|+++|..++..+.....+..
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~--- 532 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD--- 532 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc---
Confidence 00000000 0 123344444 3455555 789999999999988876544432
Q ss_pred CCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 225 PELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 225 ~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+.+++.. ++.+|++| .|+.+++|.+....
T Consensus 533 ---svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 533 ---SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ---eecceeecCCCceEEeecCCceeehhhccchh
Confidence 35666664 77888888 99999999986544
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.37 E-value=1.3e-11 Score=120.49 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=136.9
Q ss_pred ecCCEEEEEecCCeEEEEec-CCCeeEEecC--CCc---ceeEEEEcCCCCEEEEEeCCCcEEEEecc-CCc-e--eE-E
Q 003625 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPA--HTA---AVNDLSFDVDGEYVGSCSDDGSVVINSLF-TDE-K--MK-F 130 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~--h~~---~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~~~-~--~~-~ 130 (807)
|+.+++|+.+.+.-|++||. +|....++++ |.. +..+++|+|||..|.+|. ..+|+++|+. .|. + .. +
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 46778999999999999999 5666555554 332 446899999999997764 5799999994 333 2 21 1
Q ss_pred ec----CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--eCCc
Q 003625 131 DY----HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAG 201 (807)
Q Consensus 131 ~~----~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~--~d~~ 201 (807)
.. .. .+.|++|+|. ....+++|+....+-++... .+....++.+|.+.|+.++|+ |+.+.++ .|..
T Consensus 200 ~~~k~gq~giisc~a~sP~----~~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPM----DSKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred hcccccccceeeeeeccCC----CCcceeeecccceeeeEecC-CCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 11 12 7889999998 46789999998888887543 357788889999999999999 6555555 5889
Q ss_pred EEEEEcCC-CceEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 202 VKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 202 v~iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
|-.||++. +.++-.+.++... .-..+-|. .+.+|++| .+|.|++||++.-+
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~-----TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGD-----TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred EEEEeehhccchhhhhhhhccC-----ccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 99999985 3444444444321 23345563 78999999 99999999999844
No 161
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.37 E-value=2.5e-11 Score=116.90 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=141.9
Q ss_pred eEEEEe---cCCEEEEEecCCeEEEEecCCC----eeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCcee
Q 003625 57 ASCVAV---AERMIALGTHAGTVHILDFLGN----QVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 57 i~~~s~---~~~~la~gs~dg~I~i~d~~~~----~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~~~ 128 (807)
+++|.. +.++|.+++-|-+..|||+... ....+.+|...|..++|...| +.+||+|.||.||+||++.-.-.
T Consensus 153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 556555 5789999999999999999432 245678899999999999865 46899999999999999984432
Q ss_pred E--EecC--C-ceEEEEeCCCCCCcCCCEEEEecCCC-eEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-e
Q 003625 129 K--FDYH--R-PMKAISLDPDYTRKMSRRFVAGGLAG-HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-N 198 (807)
Q Consensus 129 ~--~~~~--~-~v~~v~~~p~~~~~~~~~l~~g~~dg-~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~ 198 (807)
+ +... + +...++|++. +.+++++-..|+ .|.+.|.+........+.+|.+.|++++|. +..++++ .
T Consensus 233 TIIYE~p~~~~pLlRLswnkq----DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQ----DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred eEEecCCCCCCcceeeccCcC----CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 2 3222 3 8888999887 467888876665 488889987788889999999999999999 3555555 7
Q ss_pred CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEEeCCcEEEE
Q 003625 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIGWGTYIKIA 251 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw 251 (807)
|..+-|||+.+... ..+..|-..-..+.-+..+.|+ .+.+++++.++++.+.
T Consensus 309 D~qaliWDl~q~~~-~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 309 DCQALIWDLQQMPR-ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred cceEEEEecccccc-cCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 88999999975332 1112221111233457889996 6789999988887664
No 162
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.36 E-value=1.7e-11 Score=129.08 Aligned_cols=199 Identities=19% Similarity=0.346 Sum_probs=141.5
Q ss_pred CccccCCCceEEEE--e-cCCEEEEEecCCeEEEEecC--CC------eeEEecCCCcceeEEEEcCC-CCEEEEEeCCC
Q 003625 48 LPSLLANDAASCVA--V-AERMIALGTHAGTVHILDFL--GN------QVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDG 115 (807)
Q Consensus 48 ~~~~~~~~~i~~~s--~-~~~~la~gs~dg~I~i~d~~--~~------~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg 115 (807)
+..++++..|+.++ | +...||+|+.||.|++|.+. |- +-..+.+|...|+++.|+|- .+.|++++.|-
T Consensus 621 ~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~ 700 (1012)
T KOG1445|consen 621 MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS 700 (1012)
T ss_pred ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence 45556666677744 4 67899999999999999983 21 24567889999999999984 56789999999
Q ss_pred cEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCe----EEEEE
Q 003625 116 SVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV----HVVKW 189 (807)
Q Consensus 116 ~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V----~~l~~ 189 (807)
+|++||+.++... ++.+|. .|.+++|+|+ |+.+++.+.||++++|..+. ....+....++| ..|.|
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd-----Gr~~AtVcKDg~~rVy~Prs---~e~pv~Eg~gpvgtRgARi~w 772 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPD-----GRRIATVCKDGTLRVYEPRS---REQPVYEGKGPVGTRGARILW 772 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCC-----CcceeeeecCceEEEeCCCC---CCCccccCCCCccCcceeEEE
Confidence 9999999996654 788999 9999999999 99999999999999997752 222233333333 34556
Q ss_pred e--CCEEEEE-----eCCcEEEEEcCCC--ceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 190 R--TSLIAWA-----NDAGVKVYDAAND--QRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 190 ~--~~~la~~-----~d~~v~iwd~~~~--~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
. |+++++. +.+.|.+||..+- ..+.+... .......++......+-++++| .|..|.+|.+-...
T Consensus 773 acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l---Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL---DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred EecCcEEEEecccccchhhhhhhhhhhccCCcceeeee---cccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 5 7766554 2455888887642 23332111 1112223454545567788888 78889999886544
No 163
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.6e-10 Score=108.63 Aligned_cols=196 Identities=12% Similarity=0.168 Sum_probs=145.0
Q ss_pred CCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCC-------CeeEE--ecCCC-----cceeEEEE
Q 003625 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLG-------NQVKE--FPAHT-----AAVNDLSF 101 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~-------~~~~~--~~~h~-----~~V~~l~~ 101 (807)
.+.+.++.+.+++ ..+.....+|.+|+. |.|+=|.... +.... ...|. -.|+++..
T Consensus 53 ~~iv~eqahdgpi---------y~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l 122 (325)
T KOG0649|consen 53 LKIVPEQAHDGPI---------YYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL 122 (325)
T ss_pred cceeeccccCCCe---------eeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe
Confidence 4455555555554 344555777777765 9999887631 11111 11233 25889999
Q ss_pred cCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec
Q 003625 102 DVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS 179 (807)
Q Consensus 102 s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~ 179 (807)
.|..+-++.++.|+.++-||+.+|++. .+.+|+ .|.+++-... ...+++|+.||++++||.+ +++...++..
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~-----~~qilsG~EDGtvRvWd~k-t~k~v~~ie~ 196 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA-----NGQILSGAEDGTVRVWDTK-TQKHVSMIEP 196 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc-----CcceeecCCCccEEEEecc-ccceeEEecc
Confidence 999888888889999999999999887 589999 9999987544 5789999999999999987 4444444432
Q ss_pred ---------C-CcCeEEEEEeCCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEE
Q 003625 180 ---------G-EGPVHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIK 249 (807)
Q Consensus 180 ---------~-~~~V~~l~~~~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~ 249 (807)
| ...|.+++-+...++++....+.+|.+++.++...++.+. .+..+.|.++..++.|.+++|.
T Consensus 197 yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa-------~v~~v~F~~d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPA-------RVHLVDFVDDCVLIGGEGNHVQ 269 (325)
T ss_pred ccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEeccc-------ceeEeeeecceEEEecccccee
Confidence 2 2347788888899999988899999999998888877664 2456677788888888899999
Q ss_pred EEEEe
Q 003625 250 IASIK 254 (807)
Q Consensus 250 vw~~~ 254 (807)
-|.+.
T Consensus 270 ~~~l~ 274 (325)
T KOG0649|consen 270 SYTLN 274 (325)
T ss_pred eeeec
Confidence 99875
No 164
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.35 E-value=8.9e-10 Score=116.49 Aligned_cols=192 Identities=11% Similarity=0.123 Sum_probs=127.6
Q ss_pred EEEEecCCEE-EEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEE-eCCCcEEEEeccCCcee-EEecC
Q 003625 58 SCVAVAERMI-ALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSC-SDDGSVVINSLFTDEKM-KFDYH 133 (807)
Q Consensus 58 ~~~s~~~~~l-a~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-~~Dg~v~iwd~~~~~~~-~~~~~ 133 (807)
.+++|+++.+ ++++.++.|++||.. +.....+..+.. +..++|+|+|+.++++ +.|+.+++||+.++... .+..+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 4688888866 567789999999995 444555555443 5678999999977554 56899999999886544 34434
Q ss_pred CceEEEEeCCCCCCcCCCEEEEecCCCe-EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEE-EE-eCCcEEEEEcC
Q 003625 134 RPMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIA-WA-NDAGVKVYDAA 208 (807)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la-~~-~d~~v~iwd~~ 208 (807)
..+.+++|+|+ +..+++++.++. +..|+.. .+....... ....+.++.|+ |+.++ ++ .++.|++||+.
T Consensus 115 ~~~~~~~~~~d-----g~~l~~~~~~~~~~~~~d~~-~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 115 VEPEGMAVSPD-----GKIVVNTSETTNMAHFIDTK-TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred CCcceEEECCC-----CCEEEEEecCCCeEEEEeCC-CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 46788999999 888888887764 5555653 222222222 22345678887 66664 44 58999999999
Q ss_pred CCceEEeeeCCCCC-CCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGS-PRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~-~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
+++.+..+...... .........+.|+ ++..++++ .++.+.+||+.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 98877665432111 1111223456675 56654443 56789999986543
No 165
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.34 E-value=6.2e-11 Score=114.35 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=115.9
Q ss_pred EEe-cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCC---CCEEEEEeCCCcEEEEeccCCcee-EEecCC
Q 003625 60 VAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVD---GEYVGSCSDDGSVVINSLFTDEKM-KFDYHR 134 (807)
Q Consensus 60 ~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~---g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~ 134 (807)
|-| +..++.+++.|.++++||.+.-.....-...+.|++-++||- ...+|+|..|-.|++-|+.+|.+. ++.+|+
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 667 566888999999999999975543333345567887788873 457888889999999999998765 689999
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceE--------------eecCCcCeEEEEEe--CCEEEEE
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV--------------LHSGEGPVHVVKWR--TSLIAWA 197 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~--------------~~~~~~~V~~l~~~--~~~la~~ 197 (807)
.|.+|.|+|. ..-.+++|+.||.|++||.+-...+..+ -..|.+.|.+++|. |..++++
T Consensus 189 ~~vlaV~Wsp~----~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 189 DGVLAVEWSPS----SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred CceEEEEeccC----ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 9999999998 3567899999999999987543222222 22467889999998 6666655
Q ss_pred -eCCcEEEEEcCCCce
Q 003625 198 -NDAGVKVYDAANDQR 212 (807)
Q Consensus 198 -~d~~v~iwd~~~~~~ 212 (807)
.|..+++|+..+|+.
T Consensus 265 gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRN 280 (397)
T ss_pred cCccceEEeecccCcc
Confidence 799999999987753
No 166
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.6e-11 Score=123.11 Aligned_cols=196 Identities=19% Similarity=0.251 Sum_probs=139.2
Q ss_pred CceEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEe--
Q 003625 55 DAASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD-- 131 (807)
Q Consensus 55 ~~i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~-- 131 (807)
+.+.|++.+|..+++|+.||++|||+. +-..+.....|.+.|.++.|+|||++|++.+.| ..+||+..++......
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 457899999999999999999999996 555567778899999999999999999999999 9999999997544321
Q ss_pred cCC--ceEEEEeCCCCCCcCC-CEEEEecCCCeEEEEEcc-cCCc---cceEeecCCcCeEEEEEe--CCEEEEE-eCCc
Q 003625 132 YHR--PMKAISLDPDYTRKMS-RRFVAGGLAGHLYLNSKK-WLGY---RDQVLHSGEGPVHVVKWR--TSLIAWA-NDAG 201 (807)
Q Consensus 132 ~~~--~v~~v~~~p~~~~~~~-~~l~~g~~dg~v~l~~~~-~~~~---~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~ 201 (807)
... ....+.|+.+-+. .. +.++.-...+.|+.|+.. |.+. +..........|++++.+ |+++|.+ .||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 122 6677888777111 01 333344444556666532 2221 111111223468888888 9999988 7999
Q ss_pred EEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 202 v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
|-|++..+-+++..++.. |...++.+.|+ +.+.++.- .+....+..+....
T Consensus 305 Vai~~~~~lq~~~~vk~a-----H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEA-----HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred EEEEEeceeeeeEeehhh-----heeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999999988888776443 44578889996 44444433 77778887776543
No 167
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.30 E-value=1e-09 Score=116.06 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=127.6
Q ss_pred eEEEEecCCEEEEE-ecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCC-cEEEEeccCCceeE-Eec
Q 003625 57 ASCVAVAERMIALG-THAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-SVVINSLFTDEKMK-FDY 132 (807)
Q Consensus 57 i~~~s~~~~~la~g-s~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-~v~iwd~~~~~~~~-~~~ 132 (807)
..+++|+++.++++ +.++.|++||+.. ..+..+.. ...+.+++|+|+|..+++++.++ .+.+||..++.... ...
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 44678888877554 5689999999964 34444442 33468899999999999988875 46678988766543 333
Q ss_pred CCceEEEEeCCCCCCcCCCEEE-EecCCCeEEEEEcccCCccceEeecC-----Cc--CeEEEEEe--CCEEEE--EeCC
Q 003625 133 HRPMKAISLDPDYTRKMSRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSG-----EG--PVHVVKWR--TSLIAW--ANDA 200 (807)
Q Consensus 133 ~~~v~~v~~~p~~~~~~~~~l~-~g~~dg~v~l~~~~~~~~~~~~~~~~-----~~--~V~~l~~~--~~~la~--~~d~ 200 (807)
...+.+++|+|+ ++.++ ++..+|.|.+|+.. .+.....+..+ .+ ...++.|+ ++++.. +.++
T Consensus 156 ~~~~~~~~~s~d-----g~~l~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 156 DQRPRFAEFTAD-----GKELWVSSEIGGTVSVIDVA-TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CCCccEEEECCC-----CCEEEEEcCCCCEEEEEEcC-cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 335678999999 77664 55568999999875 33333322211 11 23467787 565433 3577
Q ss_pred cEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 201 ~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
.+.+||..+++....+.... .+.+++|+ ++..|+++ .++.|.+||+.++.
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ-------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC-------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 89999999888776543221 35578886 66777765 58899999998765
No 168
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=2.1e-11 Score=125.29 Aligned_cols=184 Identities=17% Similarity=0.239 Sum_probs=135.9
Q ss_pred EEecCCEEEEEecCCeEEEEecCCCe--e-EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC-
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGNQ--V-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR- 134 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~~--~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~- 134 (807)
+.++|+.|++|+.-.++.|||+.... + ..+....-...+++.+||.+..++|..||.|.|||+.+..+ ..+.+|.
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 78899999999999999999995332 2 22333334678889999999999999999999999998654 5699999
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
.+.|+.++++ |..+-+|+-|.+|+.||.+ .+.... -+.-...|.++..+ +.+++.+ .++.+-|-......
T Consensus 553 GascIdis~d-----GtklWTGGlDntvRcWDlr-egrqlq-qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 553 GASCIDISKD-----GTKLWTGGLDNTVRCWDLR-EGRQLQ-QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred CceeEEecCC-----CceeecCCCccceeehhhh-hhhhhh-hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999 8999999999999999886 232221 11224568888777 7899998 46666666554332
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.- .+ ..|+..+-++.|. -|+++++. .|+-+..|..--+.
T Consensus 626 ky-ql------hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 626 KY-QL------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred ce-ee------cccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 22 22 2233456667774 67777655 89999999765544
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.29 E-value=7.5e-11 Score=120.53 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=139.3
Q ss_pred EEe-cCCEEEEEecCCeEEEEecCCCee---EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce--eEEecC
Q 003625 60 VAV-AERMIALGTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK--MKFDYH 133 (807)
Q Consensus 60 ~s~-~~~~la~gs~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~--~~~~~~ 133 (807)
|+| +...+.+.+.||+|+.-|+.+... .+.......+.++.|+.+..-++.|..=|...+||++++.. ..+..|
T Consensus 242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 242 FSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred ecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence 666 566888999999999999976542 23333445677888888888888888888999999998443 356666
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc---eEeecCCcCeEEEEEe---CCEEEEEeCCcEEEEE
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD---QVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYD 206 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~---~~~~~~~~~V~~l~~~---~~~la~~~d~~v~iwd 206 (807)
. .|++|+++|- ...++++++.|++.+|||.+-.+.+. ...-.|.-+|.+..|+ |+++.++.|+.|+|||
T Consensus 322 ~kKI~sv~~NP~----~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 322 KKKITSVALNPV----CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hcccceeecCCC----CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 6 9999999998 36799999999999999987555433 2334588999999999 6877777999999999
Q ss_pred cC----CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 207 AA----NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~----~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.. .......|.......++ ..+-...|. +..++++| .-..|-|++-..++
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccccccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 84 33444455444322121 122345674 56677778 56668777755433
No 170
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.29 E-value=9.7e-10 Score=113.59 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=136.0
Q ss_pred eEEEEe--cCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-------
Q 003625 57 ASCVAV--AERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------- 126 (807)
Q Consensus 57 i~~~s~--~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------- 126 (807)
+.|+++ +|. +++|.++|.|.||+..+.. .+...+|.+.|.+++.-.+|..+ ||+.|..|..||-.-.+
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCc
Confidence 666555 555 4599999999999996655 45556999999999999999755 59999999999832111
Q ss_pred ----------------------------------eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC
Q 003625 127 ----------------------------------KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (807)
Q Consensus 127 ----------------------------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (807)
.....+|. ..+.++.+|+ ..++++++.|+.+++|+.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-----~~q~~T~gqdk~v~lW~~---- 397 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-----KNQLLTCGQDKHVRLWND---- 397 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-----hhheeeccCcceEEEccC----
Confidence 01123455 7788999999 789999999999999972
Q ss_pred ccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCC
Q 003625 172 YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGT 246 (807)
Q Consensus 172 ~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~ 246 (807)
.+..--..-..++.|+.|+ | .+|.+ ..|...+.|..+...+..-.. ......+.++ +|.++++| .|+
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-------~~~ls~v~ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-------NEQLSVVRYSPDGAFLAVGSHDN 469 (626)
T ss_pred CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-------CCceEEEEEcCCCCEEEEecCCC
Confidence 2222222235678899998 6 66655 689999999998655543221 1246678885 88999999 899
Q ss_pred cEEEEEEeeCCCc
Q 003625 247 YIKIASIKTNQSN 259 (807)
Q Consensus 247 ~i~vw~~~~~~~~ 259 (807)
.|++|.+..++..
T Consensus 470 ~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 470 HIYIYRVSANGRK 482 (626)
T ss_pred eEEEEEECCCCcE
Confidence 9999999877643
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=8e-11 Score=123.82 Aligned_cols=162 Identities=16% Similarity=0.307 Sum_probs=116.5
Q ss_pred eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
...+++|++.|.+|+.+|.|.+|++|+.||+|+||.+.++.|. ++.....|.||+|+|. +...++.....+.+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~----~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPL----SDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCC----CCceeEEEEecCceEE
Confidence 3567899999999999999999999999999999999998876 5677779999999998 2333333333334444
Q ss_pred EEc-----------------------------ccCC-------ccceEeecCCcCeEEEEEe--CCEEEEEe----CCcE
Q 003625 165 NSK-----------------------------KWLG-------YRDQVLHSGEGPVHVVKWR--TSLIAWAN----DAGV 202 (807)
Q Consensus 165 ~~~-----------------------------~~~~-------~~~~~~~~~~~~V~~l~~~--~~~la~~~----d~~v 202 (807)
.+. .|.. ..+++.-.|..+|..+.|+ |.++++.. ..+|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 321 1211 1123344577889999999 89998762 3568
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.|.++..+.....+....+ .+.++.|. ....|+++....|++||+..+.
T Consensus 549 liHQLSK~~sQ~PF~kskG------~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqe 598 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKG------LVQRVKFHPSKPYLFVATQRSVRIYDLSKQE 598 (733)
T ss_pred EEEecccccccCchhhcCC------ceeEEEecCCCceEEEEeccceEEEehhHHH
Confidence 8999886655443333222 35667775 5568888999999999997643
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.27 E-value=1.8e-10 Score=110.93 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=137.2
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEecC-CCe-eEEe-----cCCCcceeEEEEcC--CCCEEEEEeCCCcEEEEeccCC
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDFL-GNQ-VKEF-----PAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTD 125 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~~-~~~-~~~~-----~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~ 125 (807)
+.| |.|++..+++-. +..|.+|++. +.. +..+ ..|....++-+|+| +|+.+++. .|+++..||+++.
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 455 888888886655 8899999994 333 2222 23556778888998 78877776 4789999999984
Q ss_pred ce-eE-EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE-e
Q 003625 126 EK-MK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-N 198 (807)
Q Consensus 126 ~~-~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~-~ 198 (807)
.. .. -..|. .|..+.|+|+ ....+++|+.||.|++||.+....+.+.+++|...|.++.|+ .+++.++ +
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpn----kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPN----KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred hhhcchhhhhcceeeeccCCCC----ceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 43 33 35666 8999999999 467899999999999999997788899999999999999999 4666666 8
Q ss_pred CCcEEEEEcCCCceEEeeeC-------------------CC----CCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEE
Q 003625 199 DAGVKVYDAANDQRITFIER-------------------PR----GSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIAS 252 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~-------------------~~----~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~ 252 (807)
|..|.+|...+-..-..+.. +. ....|...+.+++|+ .+.++..+ .||.+.|=+
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 99999997653221111110 00 012255668889996 44555554 788876654
Q ss_pred E
Q 003625 253 I 253 (807)
Q Consensus 253 ~ 253 (807)
+
T Consensus 360 V 360 (370)
T KOG1007|consen 360 V 360 (370)
T ss_pred C
Confidence 4
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.26 E-value=2.8e-10 Score=125.60 Aligned_cols=190 Identities=14% Similarity=0.188 Sum_probs=135.3
Q ss_pred eEE--EEe-cCCEEEEEecCCeEEEEecCCCe---e----EEecCCCcceeEEEEcCCCC--EEEEEeCCCcEEEEeccC
Q 003625 57 ASC--VAV-AERMIALGTHAGTVHILDFLGNQ---V----KEFPAHTAAVNDLSFDVDGE--YVGSCSDDGSVVINSLFT 124 (807)
Q Consensus 57 i~~--~s~-~~~~la~gs~dg~I~i~d~~~~~---~----~~~~~h~~~V~~l~~s~~g~--~l~s~~~Dg~v~iwd~~~ 124 (807)
++| ++| +++.+|.|+.+|.|.+||..+.. . .....|..+|+.+.|..+-. -+++++.||.|+.|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 444 555 68899999999999999994322 1 12245889999999976544 499999999999998775
Q ss_pred Cc------ee-E-E----ecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCcc--------ceEeecCCc
Q 003625 125 DE------KM-K-F----DYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR--------DQVLHSGEG 182 (807)
Q Consensus 125 ~~------~~-~-~----~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~--------~~~~~~~~~ 182 (807)
-. .. . . .... .+++++|.|. ....|++|+..|.|.--... .... ......|.+
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----~p~~FiVGTe~G~v~~~~r~-g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----DPNHFIVGTEEGKVYKGCRK-GYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccC----CCceEEEEcCCcEEEEEecc-CCcccccccccccccccccCc
Confidence 11 11 1 1 1122 8899999987 46789999999998653221 1111 223445789
Q ss_pred CeEEEEEe---CCEEEEEeCCcEEEEEcC-CCceEEeeeCCCCCCCCCCCCCeeeeeCC--CEEEEE-eCCcEEEEEEee
Q 003625 183 PVHVVKWR---TSLIAWANDAGVKVYDAA-NDQRITFIERPRGSPRPELLLPHLVWQDD--TLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 183 ~V~~l~~~---~~~la~~~d~~v~iwd~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~~~--~~l~~g-~d~~i~vw~~~~ 255 (807)
+|.++.++ ..++.++.|.+|+||... ...++..+... ..++..++|+.. ..++++ .+|.+.+||+..
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~------~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS------PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc------cceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 99999998 466666679999999987 45555443332 234778999844 477777 799999999987
Q ss_pred CC
Q 003625 256 NQ 257 (807)
Q Consensus 256 ~~ 257 (807)
..
T Consensus 474 ~~ 475 (555)
T KOG1587|consen 474 DD 475 (555)
T ss_pred cc
Confidence 65
No 174
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.26 E-value=1.5e-10 Score=123.73 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=132.7
Q ss_pred EEEEEecCCeEEEEecCC----CeeE----------------------------------EecCCCcceeEEEEcCCCCE
Q 003625 66 MIALGTHAGTVHILDFLG----NQVK----------------------------------EFPAHTAAVNDLSFDVDGEY 107 (807)
Q Consensus 66 ~la~gs~dg~I~i~d~~~----~~~~----------------------------------~~~~h~~~V~~l~~s~~g~~ 107 (807)
.++++++||+|++|++.+ ...+ ..-.....|.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 477999999999999865 1100 00012346899999999999
Q ss_pred EEEEeCCCcEEEEeccC-CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeE
Q 003625 108 VGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVH 185 (807)
Q Consensus 108 l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~ 185 (807)
||+|..-|.++|+++.. .....+..|. .|.|+.++-. ..+.+++++++.|.-|.++|..-.-....++.+|...|+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p--~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP--VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCc--hhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999988 4455788888 9999999743 122478999999999999998644566788999999999
Q ss_pred EEEEe--C---CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 186 VVKWR--T---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 186 ~l~~~--~---~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
++.|. | +++.++.|..|.+-..+.......+.++...... .....+... ...+++++ .|..|+||++..++.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k-tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK-TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc-ceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 99998 3 5666667877643322211111222222211111 112233332 33455555 899999999998875
Q ss_pred cCC
Q 003625 259 NVA 261 (807)
Q Consensus 259 ~~~ 261 (807)
...
T Consensus 631 ~k~ 633 (1080)
T KOG1408|consen 631 VKS 633 (1080)
T ss_pred eee
Confidence 433
No 175
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.26 E-value=7.1e-11 Score=125.25 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=125.3
Q ss_pred EEEecCCEEEEEecCCeEEEEecCC-CeeE--EecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCc--------
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLG-NQVK--EFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE-------- 126 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~-~~~~--~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~-------- 126 (807)
.|.|....|++++.|.++++||+.+ +.+. .+.+|.+.|.++||.|... .|++|+.||.+.|||++-..
T Consensus 107 ~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 107 KWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred ccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 5778777899999999999999964 3333 4789999999999998654 68899999999999986321
Q ss_pred --------------------eeEEecCC-ceEE---EEeCCCCCCcCCCEEEEecC-CCeEEEEEcccCC-----ccce-
Q 003625 127 --------------------KMKFDYHR-PMKA---ISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLG-----YRDQ- 175 (807)
Q Consensus 127 --------------------~~~~~~~~-~v~~---v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~-----~~~~- 175 (807)
+.....+. .|.+ +.+.-| ...++++|. |+.|++||.+-.. ....
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-----e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-----ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-----cceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 00111122 2333 333334 477888777 9999999986332 1111
Q ss_pred -EeecC---CcCeEEEEEe--C-CEEEEEeCCcEEEEEcCCCc--eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eC
Q 003625 176 -VLHSG---EGPVHVVKWR--T-SLIAWANDAGVKVYDAANDQ--RITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG 245 (807)
Q Consensus 176 -~~~~~---~~~V~~l~~~--~-~~la~~~d~~v~iwd~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d 245 (807)
.+..| .-.++++..+ | .++|.++|++|..|++.+.. ++..+... .....++-++.-.++..+++| +|
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~---~~~sf~vks~lSpd~~~l~SgSsd 338 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK---LNSSFYVKSELSPDDCSLLSGSSD 338 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc---ccceeeeeeecCCCCceEeccCCC
Confidence 11222 2235555555 5 45566699999999998643 22222221 111222222222378888888 99
Q ss_pred CcEEEEEEeeCCCc
Q 003625 246 TYIKIASIKTNQSN 259 (807)
Q Consensus 246 ~~i~vw~~~~~~~~ 259 (807)
...++|.+......
T Consensus 339 ~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 339 EQAYIWVVSSPEAP 352 (720)
T ss_pred cceeeeeecCccCC
Confidence 99999999876633
No 176
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=9e-08 Score=105.13 Aligned_cols=135 Identities=11% Similarity=0.168 Sum_probs=91.6
Q ss_pred cCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCC-----CCEEEEEeCCCcEEEEeccC-C--ceeEEecC
Q 003625 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVD-----GEYVGSCSDDGSVVINSLFT-D--EKMKFDYH 133 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~-----g~~l~s~~~Dg~v~iwd~~~-~--~~~~~~~~ 133 (807)
.|+++++|+.||+|.|..+ ++....++. ...++.+++++|+ .+.+++||.-| +.++.-+- + ........
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 5899999999999999888 444444443 4458899999997 56789999988 77765332 2 22223333
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC------eEEEEEe-CCEEEEEeCCcEEEE
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP------VHVVKWR-TSLIAWANDAGVKVY 205 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~------V~~l~~~-~~~la~~~d~~v~iw 205 (807)
. +|.++.|. |+++|-++.+| |++|+.. .++....+...... -..+.|. ...++.|...+|+|.
T Consensus 160 eG~I~~i~W~-------g~lIAWand~G-v~vyd~~-~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~ 230 (846)
T KOG2066|consen 160 EGPIHSIKWR-------GNLIAWANDDG-VKVYDTP-TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKIC 230 (846)
T ss_pred ccceEEEEec-------CcEEEEecCCC-cEEEecc-ccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEE
Confidence 3 99999996 45788888776 6778765 23333333222122 2356777 567777767788888
Q ss_pred EcC
Q 003625 206 DAA 208 (807)
Q Consensus 206 d~~ 208 (807)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 887
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.24 E-value=6e-11 Score=116.33 Aligned_cols=184 Identities=14% Similarity=0.184 Sum_probs=126.1
Q ss_pred EEe-cCCEEEEEecCCeEEEEecC-CCeeEEe---cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee------
Q 003625 60 VAV-AERMIALGTHAGTVHILDFL-GNQVKEF---PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM------ 128 (807)
Q Consensus 60 ~s~-~~~~la~gs~dg~I~i~d~~-~~~~~~~---~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~------ 128 (807)
+.| ..+++++|+.|-.|++|+++ ...+..+ .+|.+.|.++.|+++|.+|+|||.|.++++|++...+..
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s 222 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS 222 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh
Confidence 566 45799999999999999995 4444444 569999999999999999999999999999999842210
Q ss_pred -----------------------EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCcc----------c
Q 003625 129 -----------------------KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR----------D 174 (807)
Q Consensus 129 -----------------------~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~----------~ 174 (807)
+-..|+ +|-|+.|- |.++++-+.++.|..|...-.... .
T Consensus 223 ~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 223 ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred cccCCCCccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 112344 56666663 568889888999999975312211 1
Q ss_pred eE---eecCCcCeEEEEEe----CCEEEEE-eCCcEEEEEcCCCceEE--eeeCCCCCCCCCCCCCeeeee-CCCEEEE-
Q 003625 175 QV---LHSGEGPVHVVKWR----TSLIAWA-NDAGVKVYDAANDQRIT--FIERPRGSPRPELLLPHLVWQ-DDTLLVI- 242 (807)
Q Consensus 175 ~~---~~~~~~~V~~l~~~----~~~la~~-~d~~v~iwd~~~~~~~~--~i~~~~~~~~~~~~~~~l~~~-~~~~l~~- 242 (807)
++ +.-....|+-+.|. ++++|.+ ..|.|.+||++...+.. ++..+. ....+...+|+ ++.+|+.
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~----~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK----SGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc----ccceeeeeeecccCcEEEEE
Confidence 11 12234566777776 6788888 68899999999765532 222111 12345566676 5554444
Q ss_pred EeCCcEEEEEEe
Q 003625 243 GWGTYIKIASIK 254 (807)
Q Consensus 243 g~d~~i~vw~~~ 254 (807)
+.|++|.=||..
T Consensus 372 cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 372 CDDGTVWRWDRV 383 (385)
T ss_pred eCCCcEEEEEee
Confidence 488888888754
No 178
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.23 E-value=1.1e-09 Score=107.39 Aligned_cols=192 Identities=15% Similarity=0.271 Sum_probs=137.4
Q ss_pred ceEE--EEecCCEEEEEecCCeEEEEecCCCe----eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-Cc--
Q 003625 56 AASC--VAVAERMIALGTHAGTVHILDFLGNQ----VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DE-- 126 (807)
Q Consensus 56 ~i~~--~s~~~~~la~gs~dg~I~i~d~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~-- 126 (807)
+|+| |+.++..+|++..+..|+||...+.. .++++.|...|++++|+|.++.|++|+.|..-++|.... +.
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wk 91 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWK 91 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeec
Confidence 3445 77789999999999999999985443 678899999999999999999999999999999999844 32
Q ss_pred --eeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC---ccceEeecCCcCeEEEEEe--CCEEEEE-e
Q 003625 127 --KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR--TSLIAWA-N 198 (807)
Q Consensus 127 --~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~---~~~~~~~~~~~~V~~l~~~--~~~la~~-~ 198 (807)
+..+...+.+++|.|+|. ++.|++|+....|.+|-..-.. -...+-..++..|+++.|+ +-+++.+ .
T Consensus 92 ptlvLlRiNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 92 PTLVLLRINRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred cceeEEEeccceeeEeecCc-----CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 223455569999999999 8999999999998887432100 1111223456789999999 4455555 6
Q ss_pred CCcEEEEEcCCCceEEeeeC-CCC---------------CCCCCCCCCeeeee-CCCEEE-EEeCCcEEEEEEeeC
Q 003625 199 DAGVKVYDAANDQRITFIER-PRG---------------SPRPELLLPHLVWQ-DDTLLV-IGWGTYIKIASIKTN 256 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~-~~~---------------~~~~~~~~~~l~~~-~~~~l~-~g~d~~i~vw~~~~~ 256 (807)
|+..||+..--+ .++. +.. ......++..+.|+ .|..|+ +|.|+++.+-|-...
T Consensus 167 D~k~rVfSayIK----~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 167 DGKCRVFSAYIK----GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred CcceeEEEEeee----ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 999999975311 1110 000 00233456677785 455454 669999988876554
No 179
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.4e-10 Score=118.35 Aligned_cols=188 Identities=12% Similarity=0.213 Sum_probs=128.2
Q ss_pred eEE--EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCE--EEEEeCC-----------------
Q 003625 57 ASC--VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEY--VGSCSDD----------------- 114 (807)
Q Consensus 57 i~~--~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~--l~s~~~D----------------- 114 (807)
+.| ..|.|.+||+|+.||+|+||.+ .|++++++. ..+.|.|++|+|.+.. ||++-.+
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcc
Confidence 455 4557999999999999999999 677777764 4457999999997653 3222221
Q ss_pred ---------------CcEEEEeccC------CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCC---eEEEEEcccC
Q 003625 115 ---------------GSVVINSLFT------DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAG---HLYLNSKKWL 170 (807)
Q Consensus 115 ---------------g~v~iwd~~~------~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg---~v~l~~~~~~ 170 (807)
+.+..|.-.. +.+..+...++|+.+.||.. |.+|++...++ .|.+++.. .
T Consensus 482 t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-----GDYlatV~~~~~~~~VliHQLS-K 555 (733)
T KOG0650|consen 482 TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-----GDYLATVMPDSGNKSVLIHQLS-K 555 (733)
T ss_pred hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-----CceEEEeccCCCcceEEEEecc-c
Confidence 2233443321 11334555559999999998 89999886644 47777654 2
Q ss_pred CccceEeecCCcCeEEEEEeC--CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCC
Q 003625 171 GYRDQVLHSGEGPVHVVKWRT--SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGT 246 (807)
Q Consensus 171 ~~~~~~~~~~~~~V~~l~~~~--~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~ 246 (807)
......+....|.|.++.|+| .++..++...|+|||+..+..+..+. ....++.+++.+ .|..+++| .|+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~------tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLL------TGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHh------cCCeeeeeeeecCCCCeEEEecCCC
Confidence 233344555678899999994 67777888999999998765544321 122345566654 45556666 899
Q ss_pred cEEEEEEeeCC
Q 003625 247 YIKIASIKTNQ 257 (807)
Q Consensus 247 ~i~vw~~~~~~ 257 (807)
.+..+|+.-+.
T Consensus 630 k~~WfDldlss 640 (733)
T KOG0650|consen 630 KMCWFDLDLSS 640 (733)
T ss_pred eeEEEEcccCc
Confidence 99999987664
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.21 E-value=4.2e-10 Score=115.87 Aligned_cols=188 Identities=13% Similarity=0.204 Sum_probs=127.5
Q ss_pred EEEec-CCEEEEE--ecCCeEEEEecCCCe--eEEe-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Ee
Q 003625 59 CVAVA-ERMIALG--THAGTVHILDFLGNQ--VKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FD 131 (807)
Q Consensus 59 ~~s~~-~~~la~g--s~dg~I~i~d~~~~~--~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~ 131 (807)
.+.++ .++++++ +.|..|++|...|.. +... +.-...-.|++......++++||..|+|+|||++...+.+ +.
T Consensus 39 s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk 118 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK 118 (673)
T ss_pred eeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc
Confidence 44442 3345555 456789999887662 2222 1122234555555556899999999999999999777764 67
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCC-cCeEEEEEe--C-CEEEEE-eCCcEEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE-GPVHVVKWR--T-SLIAWA-NDAGVKVY 205 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~-~~V~~l~~~--~-~~la~~-~d~~v~iw 205 (807)
.|. .|++|.++.. ..++++++..|.|.++... .+.+...+.... ..|.-+.|+ . .++.++ .+|.|.+|
T Consensus 119 dh~stvt~v~YN~~-----DeyiAsvs~gGdiiih~~~-t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 119 DHQSTVTYVDYNNT-----DEYIASVSDGGDIIIHGTK-TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred CCcceeEEEEecCC-----cceeEEeccCCcEEEEecc-cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 788 9999999877 7999999999999998765 444455554443 445578888 2 344444 68899999
Q ss_pred EcCCCceEEeeeCCCCCCCCCCCCCeeeee--CCCEEE-EEeCCcEEEEEEeeCC
Q 003625 206 DAANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLV-IGWGTYIKIASIKTNQ 257 (807)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~-~g~d~~i~vw~~~~~~ 257 (807)
|+....++..+... |.+....++|+ +..+++ +|.|..|.+||++...
T Consensus 193 Dv~g~sp~~~~~~~-----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 193 DVQGMSPIFHASEA-----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eccCCCcccchhhh-----ccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 99987776654322 23334455564 444444 4589999999998554
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.17 E-value=6.5e-10 Score=112.22 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=84.0
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC--------C-----Ce----eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEE
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL--------G-----NQ----VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI 119 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~--------~-----~~----~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i 119 (807)
+..|+|+|+.+|+|+.+|.|.+|-.. + +. .+.+.+|...|..++|+|++.++++++.|..+++
T Consensus 70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 34589999999999999999999764 2 11 3456789999999999999999999999999999
Q ss_pred EeccCCceeE-EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE
Q 003625 120 NSLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 120 wd~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (807)
||+..|.+.. +..|. .|..++|+|. ++++++-+.|...+
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl-----~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPL-----NQYVASKSSDRHPE 190 (434)
T ss_pred EEeccceeEeeccccccccceeecchh-----hhhhhhhccCcccc
Confidence 9999988764 56676 8999999997 67777766665433
No 182
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=9.8e-10 Score=107.23 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=108.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCcc
Q 003625 96 VNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR 173 (807)
Q Consensus 96 V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~ 173 (807)
..|+.|++.|.++|+|+.||.|.|||+.+..+. .+.+|. ||+|++|+++ |+.+++++.|..+.+||.. .|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-----gr~LltsS~D~si~lwDl~-~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-----GRKLLTSSRDWSIKLWDLL-KGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-----CCEeeeecCCceeEEEecc-CCCc
Confidence 678999999999999999999999999995554 578888 9999999999 9999999999999999986 4544
Q ss_pred ceEeecCCcCeEEEEEeC----CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCc
Q 003625 174 DQVLHSGEGPVHVVKWRT----SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTY 247 (807)
Q Consensus 174 ~~~~~~~~~~V~~l~~~~----~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~ 247 (807)
...+. -+.+|+.+.|++ ..+++-.+..-.+.++..+.. ..+.... .........+..|. .|.++++| ..|.
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~-d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDD-DGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCC-ccccccccccccccCCCCEEEEecCcce
Confidence 33332 367899999993 455555555555566554221 1111111 00111111222343 78899999 8899
Q ss_pred EEEEEEeeCC
Q 003625 248 IKIASIKTNQ 257 (807)
Q Consensus 248 i~vw~~~~~~ 257 (807)
+.|++..+..
T Consensus 177 llv~~a~t~e 186 (405)
T KOG1273|consen 177 LLVYDAETLE 186 (405)
T ss_pred EEEEecchhe
Confidence 9999987653
No 183
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.15 E-value=4.8e-09 Score=108.58 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=114.1
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ce
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PM 136 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v 136 (807)
.+.+|+.+.+++++.|+.+++|+ +.+...+ +.-..++.|+.|+|.| .+|.|+..|.-.+.|..+....++.... ++
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~-~~k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~l 450 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN-DHKLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQL 450 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc-CCceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCce
Confidence 35667888999999999999999 3333332 2345678999999999 9999999999999999997777654446 99
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec-CCcCeEEEEEe--CCEEEEE-eCCcEEEEEc
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWR--TSLIAWA-NDAGVKVYDA 207 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~-~~~~V~~l~~~--~~~la~~-~d~~v~iwd~ 207 (807)
++|+|+|+ |.+||+|+.|+.|++|...-.+.+...... +..+|+.+.|+ ++++.+- .|-.|-.|..
T Consensus 451 s~v~ysp~-----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 451 SVVRYSPD-----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEEEEcCC-----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 99999999 999999999999999987766655444432 33899999999 6787776 5888999943
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.15 E-value=1.4e-09 Score=106.60 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=137.7
Q ss_pred CCceeeeecCCCCccccCCC---------ceEEEEecCCEEEEEecCCeEEEEec--CCCe--eEEec-----CCCccee
Q 003625 36 EPRLKYQRMGGSLPSLLAND---------AASCVAVAERMIALGTHAGTVHILDF--LGNQ--VKEFP-----AHTAAVN 97 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~---------~i~~~s~~~~~la~gs~dg~I~i~d~--~~~~--~~~~~-----~h~~~V~ 97 (807)
+|+.-+..+++.+...+..- -..+|+|+|..|.. +..+.|++||. .|+. +.... +..+.|.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 44444445556555544331 14579999999954 56689999998 3544 22222 2367899
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeccCCc-eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecC-CCeEEEEEcccCCcc
Q 003625 98 DLSFDVDGE-YVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYR 173 (807)
Q Consensus 98 ~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~ 173 (807)
+++|+|-.. .++.|+....+-|+.-.++. +..+.+|. .|+.+.|+++ |+.|.+|.. +..|..||.+..+..
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed-----Gn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED-----GNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC-----cCeecccccCCCeEEEEeehhccch
Confidence 999999654 78999999999998887754 45666777 9999999999 788888865 557999999876666
Q ss_pred ceEeecCCc-CeEEEEEe----CCEEEEE-eCCcEEEEEcCC-CceEEeeeCCCCCCCCCCCCCeeeeeCC-CEEEEEeC
Q 003625 174 DQVLHSGEG-PVHVVKWR----TSLIAWA-NDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQDD-TLLVIGWG 245 (807)
Q Consensus 174 ~~~~~~~~~-~V~~l~~~----~~~la~~-~d~~v~iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~l~~g~d 245 (807)
.-.+..|.+ .-..|-|. |++++++ .||.|++||+.+ +......... ...+..+++++- .+++++.+
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~------sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY------SDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc------cccccceecCcccceeeeccC
Confidence 666666655 55667787 7999999 899999999987 5534433222 223444555433 34444454
Q ss_pred CcE
Q 003625 246 TYI 248 (807)
Q Consensus 246 ~~i 248 (807)
..+
T Consensus 361 qr~ 363 (406)
T KOG2919|consen 361 QRI 363 (406)
T ss_pred cee
Confidence 444
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.2e-09 Score=107.39 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=112.5
Q ss_pred EEEecCCEEEEEecCCeEEEEecCC-------CeeEEe-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLG-------NQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK- 129 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~-------~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~- 129 (807)
-|+.++++||+|+.|..+++|+++. +++... ..|.+.|.|++|+...+++.+|+.+|+|..-|+.+.+..-
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence 4777899999999999999999842 223332 2366899999999999999999999999999999866543
Q ss_pred Ee--cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee--cCCcCeEEEEEe---CCEEEEE-eCC
Q 003625 130 FD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR---TSLIAWA-NDA 200 (807)
Q Consensus 130 ~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~--~~~~~V~~l~~~---~~~la~~-~d~ 200 (807)
+. ..+ .|..+..+|. .+.|++.+.+|.|.+|+.+-.......+. .....-..+.|+ +.++++. ..+
T Consensus 143 ~~~~~~~~~VY~m~~~P~-----DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~ 217 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPT-----DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG 217 (609)
T ss_pred ecccCcccceeecccCCC-----CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence 32 223 8999999998 79999999999999999874332332222 233445677788 6788877 678
Q ss_pred cEEEEEcCC
Q 003625 201 GVKVYDAAN 209 (807)
Q Consensus 201 ~v~iwd~~~ 209 (807)
++.+||.+.
T Consensus 218 G~~~~D~R~ 226 (609)
T KOG4227|consen 218 GPNVFDRRM 226 (609)
T ss_pred CCCceeecc
Confidence 899999874
No 186
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=9e-11 Score=120.06 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=123.4
Q ss_pred eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE
Q 003625 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (807)
++.++.|. .|..+.|-|..-.|++++..|.++.-|+.+|++. .+.... .+..++-+|- +..+-+|...|+|.
T Consensus 203 lHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-----NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 203 LHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-----NAVIHLGHSNGTVS 276 (545)
T ss_pred EeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-----cceEEEcCCCceEE
Confidence 33344333 5777888888888999999999999999998876 354444 7888888998 68999999999999
Q ss_pred EEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEE
Q 003625 164 LNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLL 240 (807)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l 240 (807)
+|... ......-+-.|.++|.+|++. |++++++ .|+.++|||+++...+.++..+. ....+++|+..+|
T Consensus 277 lWSP~-skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~-------~a~~ls~SqkglL 348 (545)
T KOG1272|consen 277 LWSPN-SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH-------PASNLSLSQKGLL 348 (545)
T ss_pred ecCCC-CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC-------Cccccccccccce
Confidence 99875 345555567899999999999 8999888 69999999999877666554432 2456778899999
Q ss_pred EEEeCCcEEEEEEee
Q 003625 241 VIGWGTYIKIASIKT 255 (807)
Q Consensus 241 ~~g~d~~i~vw~~~~ 255 (807)
++|+++.|.||.=..
T Consensus 349 A~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDAL 363 (545)
T ss_pred eeecCCeeeeehhhh
Confidence 999999999996433
No 187
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.14 E-value=3.8e-09 Score=115.72 Aligned_cols=194 Identities=13% Similarity=0.175 Sum_probs=147.5
Q ss_pred eEE-EEec--CCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEe
Q 003625 57 ASC-VAVA--ERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (807)
Q Consensus 57 i~~-~s~~--~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~ 131 (807)
|++ ++|+ =+.++.|+..|.+.+|++ .++.+.+++++.+.|+++.-+|-=..++.|..+|+|.+++++.+++. +++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 555 4554 357889999999999999 57778999999999999999999899999999999999999997654 687
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-C-CEEEEE-eCCcEEEEEc
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-T-SLIAWA-NDAGVKVYDA 207 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~-~~la~~-~d~~v~iwd~ 207 (807)
... +|++++|..+ +...+++|+..|.+.+||..-......+...|.+.|+...|. | .+++++ .|+++++|-.
T Consensus 242 ~d~g~VtslSFrtD----G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTD----GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred ccccceeEEEeccC----CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 765 9999999988 456788888889999999862222233344688899999888 3 445554 6999999877
Q ss_pred CCCceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeC
Q 003625 208 ANDQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
.++.....+-+. ..+|..++.++.+- .+..+.++ .|.+.+.+++...
T Consensus 318 D~~dg~pR~LR~--R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e 367 (910)
T KOG1539|consen 318 DSGDGVPRLLRS--RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISE 367 (910)
T ss_pred eCCCCcchheee--ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHH
Confidence 754332211111 34556667788883 66777766 8888888887644
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.13 E-value=2.8e-10 Score=114.84 Aligned_cols=149 Identities=25% Similarity=0.298 Sum_probs=120.7
Q ss_pred EEecCC-EEEEEecCCeEEEEecC----CC---e---eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc-----
Q 003625 60 VAVAER-MIALGTHAGTVHILDFL----GN---Q---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF----- 123 (807)
Q Consensus 60 ~s~~~~-~la~gs~dg~I~i~d~~----~~---~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~----- 123 (807)
|..++. .+|+|+.|..|++|-+. ++ . ...+..|..+|+++.|+|+|+.+|||+++|.|.+|-..
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 444433 99999999999999872 22 1 34567799999999999999999999999999999765
Q ss_pred ---C-----Cc---e-eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe
Q 003625 124 ---T-----DE---K-MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (807)
Q Consensus 124 ---~-----~~---~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~ 190 (807)
+ .+ + ..+.+|+ .|..++|+|+ +.++++|+.|..+++||.. .|.....+..|...|..++|.
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-----~~~l~s~s~dns~~l~Dv~-~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-----SNFLVSGSVDNSVRLWDVH-AGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred cccchhhhCccceEEEEEecccccchhhhhccCC-----CceeeeeeccceEEEEEec-cceeEeeccccccccceeecc
Confidence 2 11 1 2356677 9999999999 8999999999999999987 678888899999999999999
Q ss_pred --CCEEEEE-eCCcEEEEEcCCCceEE
Q 003625 191 --TSLIAWA-NDAGVKVYDAANDQRIT 214 (807)
Q Consensus 191 --~~~la~~-~d~~v~iwd~~~~~~~~ 214 (807)
++++++- .|...+.+++...+.+.
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeee
Confidence 6777765 67777777776655444
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.13 E-value=1e-09 Score=116.06 Aligned_cols=184 Identities=19% Similarity=0.356 Sum_probs=132.7
Q ss_pred cCCEEEEEe--cCCeEEEEecC--CCe---eEEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCcee------
Q 003625 63 AERMIALGT--HAGTVHILDFL--GNQ---VKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKM------ 128 (807)
Q Consensus 63 ~~~~la~gs--~dg~I~i~d~~--~~~---~~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~------ 128 (807)
++.++|+-. ..|.+-|.-++ |+. +..+.+|.+.|+++.|+| ....|+|||.|..|+||.+..+.-.
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 344555432 23455565552 332 556788999999999998 4557899999999999999853322
Q ss_pred -EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEE
Q 003625 129 -KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (807)
Q Consensus 129 -~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~ 203 (807)
.+.+.. .|.|+.|||. ..-+...+..|++.+||.. .++....+.+|...|.+..|+ |.+++++ .|..|+
T Consensus 122 ~~~g~~~~~vE~l~fHpT-----aDgil~s~a~g~v~i~D~s-tqk~~~el~~h~d~vQSa~WseDG~llatscKdkqir 195 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPT-----ADGILASGAHGSVYITDIS-TQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIR 195 (1012)
T ss_pred eeecCCceEEEEeecccC-----cCceEEeccCceEEEEEcc-cCceeecccCCchhhhccccccCCceEeeecCCcceE
Confidence 223333 8999999998 4445555567899999986 567778888999999999999 8999988 799999
Q ss_pred EEEcCC-CceEEeeeCCCCCCCCCCCCCeeeeeCC--CEEEEEeC----CcEEEEEEeeCC
Q 003625 204 VYDAAN-DQRITFIERPRGSPRPELLLPHLVWQDD--TLLVIGWG----TYIKIASIKTNQ 257 (807)
Q Consensus 204 iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~~~--~~l~~g~d----~~i~vw~~~~~~ 257 (807)
|||.+. +..++..+.|.+. .-..+.|..+ +++.+|.+ ..|++||.+.-+
T Consensus 196 ifDPRa~~~piQ~te~H~~~-----rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~ 251 (1012)
T KOG1445|consen 196 IFDPRASMEPIQTTEGHGGM-----RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFG 251 (1012)
T ss_pred EeCCccCCCccccccccccc-----hhheeeeccchhhhhhcccchhhheeeeeeeccccC
Confidence 999985 4556655555432 2356788654 66667743 348899987655
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.12 E-value=6.7e-10 Score=107.15 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=108.5
Q ss_pred EEEe--cCCEEEEEecCCeEEEEecCC-CeeEEe-cCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCC--ceeEEe
Q 003625 59 CVAV--AERMIALGTHAGTVHILDFLG-NQVKEF-PAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTD--EKMKFD 131 (807)
Q Consensus 59 ~~s~--~~~~la~gs~dg~I~i~d~~~-~~~~~~-~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~--~~~~~~ 131 (807)
.|+| +|+.+++ +.++++..||..+ .....+ .+|...|.++.|+|+.+ +|+||++||.|++||.++. .+..+.
T Consensus 177 ~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 4888 4667654 5679999999953 223333 56888999999999876 5889999999999999873 355688
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc----------------------------CCccceEeecCCc
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW----------------------------LGYRDQVLHSGEG 182 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~----------------------------~~~~~~~~~~~~~ 182 (807)
.|. .|++|.|+|.. .+++++||.|..|.+|...- ......++..|+.
T Consensus 256 ~HsHWvW~VRfn~~h----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEH----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred CCceEEEEEEecCcc----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 888 99999999983 68999999999999994110 0122335667899
Q ss_pred CeEEEEEe---CCEEEEE-eCCcEEEEEcC
Q 003625 183 PVHVVKWR---TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 183 ~V~~l~~~---~~~la~~-~d~~v~iwd~~ 208 (807)
.|.+++|+ |=++|+- .||.+.|=.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 99999999 3344443 58888665543
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=8.6e-10 Score=115.86 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=130.2
Q ss_pred cccCCCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecC--C---------CeeEEecCCCcceeEEE
Q 003625 32 EEEEEPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFL--G---------NQVKEFPAHTAAVNDLS 100 (807)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~--~---------~~~~~~~~h~~~V~~l~ 100 (807)
..+.+|.+.|..|.+++..+ ++..++..+.+|+.||+|+.|++. + .....+.+|++.|+.++
T Consensus 331 ~~~~epi~tfraH~gPVl~v-------~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 331 EKDVEPILTFRAHEGPVLCV-------VVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred ccceeeeEEEecccCceEEE-------EecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeee
Confidence 44556777777777776544 677789999999999999999662 1 11356789999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeccCCcee---------------------------------------------EEe----
Q 003625 101 FDVDGEYVGSCSDDGSVVINSLFTDEKM---------------------------------------------KFD---- 131 (807)
Q Consensus 101 ~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---------------------------------------------~~~---- 131 (807)
+|+....|++|+.||+|+.|+....... .+.
T Consensus 404 ~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 404 LSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 9999999999999999999986542110 000
Q ss_pred -cC---CceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEE
Q 003625 132 -YH---RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKV 204 (807)
Q Consensus 132 -~~---~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~i 204 (807)
+. ..+.-|.++|. ....+++..|+.|++++.. .+........|...++++++. |-++.++ .|+.+++
T Consensus 484 ~~~~~~~~in~vVs~~~-----~~~~~~~hed~~Ir~~dn~-~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPT-----ADITFTAHEDRSIRFFDNK-TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred CcccccCccceEEecCC-----CCeeEecccCCceeccccc-ccccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 00 13456777777 6788889999999988765 455566666788899999998 6666666 7999999
Q ss_pred EEcCCCceEEeee
Q 003625 205 YDAANDQRITFIE 217 (807)
Q Consensus 205 wd~~~~~~~~~i~ 217 (807)
|.+....++....
T Consensus 558 ~kld~k~~~~es~ 570 (577)
T KOG0642|consen 558 WKLDVKTCVLEST 570 (577)
T ss_pred hhccchheeeccc
Confidence 9998877766543
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.12 E-value=7.6e-09 Score=100.87 Aligned_cols=148 Identities=16% Similarity=0.250 Sum_probs=101.4
Q ss_pred EEEEecCCEEEEEec----------CCeEEEEec--CCCeeEEecC-CCcceeEEEEcCCCCEEEEE--eCCCcEEEEec
Q 003625 58 SCVAVAERMIALGTH----------AGTVHILDF--LGNQVKEFPA-HTAAVNDLSFDVDGEYVGSC--SDDGSVVINSL 122 (807)
Q Consensus 58 ~~~s~~~~~la~gs~----------dg~I~i~d~--~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~--~~Dg~v~iwd~ 122 (807)
..|+++|+.|++-.. -|...+|.+ .+..+..+.- ..++|.+++|+|+|+.++.+ ..++.|.+||+
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence 358888887766433 133444444 4445545543 34579999999999987654 45789999999
Q ss_pred cCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecC---CCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE
Q 003625 123 FTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA 197 (807)
Q Consensus 123 ~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~ 197 (807)
+...+..+. ..+++.+.|+|+ |+++++|+. .|.+.+||.. ....... .....++.++|+ |++++++
T Consensus 91 ~~~~i~~~~-~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~-~~~~i~~--~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 91 KGKKIFSFG-TQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVR-KKKKIST--FEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred cccEeEeec-CCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECC-CCEEeec--cccCcEEEEEEcCCCCEEEEE
Confidence 754444443 238889999999 899998864 4679999886 2222222 223347899999 7888776
Q ss_pred -e------CCcEEEEEcCCCceEEe
Q 003625 198 -N------DAGVKVYDAANDQRITF 215 (807)
Q Consensus 198 -~------d~~v~iwd~~~~~~~~~ 215 (807)
+ |++++||+.. |+.+..
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEe
Confidence 2 7889999986 445443
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=8.6e-09 Score=114.48 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=120.2
Q ss_pred EEEEecCCEEEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEE--eccCCceeEEe
Q 003625 58 SCVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVIN--SLFTDEKMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iw--d~~~~~~~~~~ 131 (807)
.+|+|+|+.|++++.+ ..|++||+.+.....+....+...+++|+|||+.|+.++ .+|.+.|| |+.++....+.
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 4699999999887654 479999996543323332223344679999999988765 67876655 66667776666
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEE-ecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEc
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVA-GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDA 207 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~-g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~ 207 (807)
.+. .+.+.+|+|+ ++.++. +..+|...+|.....+.....+ .+.+ .+..|+ |+.++.+....+.+||+
T Consensus 289 ~~~~~~~~~~wSpD-----G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 289 SGAGNNTEPSWSPD-----GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred cCCCCcCCEEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 666 7889999999 776654 4467888888765434333333 3333 356777 67777765456777999
Q ss_pred CCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEee
Q 003625 208 ANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~ 255 (807)
.++......... ......|+ ++..++.+ .++.+.+|.+..
T Consensus 361 ~~g~~~~lt~~~--------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 361 TSGSTEVLSSTF--------LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred CCCCeEEecCCC--------CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 887654321111 11345675 67777776 778888887753
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.11 E-value=1e-09 Score=114.41 Aligned_cols=131 Identities=19% Similarity=0.294 Sum_probs=101.2
Q ss_pred CceEE--EEe-cCCEEEEEecCCeEEEEecC---C------------C--------------eeEEecCCCcceeEEEEc
Q 003625 55 DAASC--VAV-AERMIALGTHAGTVHILDFL---G------------N--------------QVKEFPAHTAAVNDLSFD 102 (807)
Q Consensus 55 ~~i~~--~s~-~~~~la~gs~dg~I~i~d~~---~------------~--------------~~~~~~~h~~~V~~l~~s 102 (807)
..++| |-| +...+.+.-.+|.++++|.. + . ++..+.--.+.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 44667 556 45566677889999999652 1 0 011222234578899999
Q ss_pred CCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC
Q 003625 103 VDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG 180 (807)
Q Consensus 103 ~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~ 180 (807)
|||++||+.|.||.+||+|..+.++. .++..- ...||+|+|| |++|++|+.|.-|.+|... .++.+..-++|
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD-----GKyIvtGGEDDLVtVwSf~-erRVVARGqGH 373 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD-----GKYIVTGGEDDLVTVWSFE-ERRVVARGQGH 373 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC-----ccEEEecCCcceEEEEEec-cceEEEecccc
Confidence 99999999999999999999986654 333333 8999999999 9999999999999999764 45556666789
Q ss_pred CcCeEEEEEeC
Q 003625 181 EGPVHVVKWRT 191 (807)
Q Consensus 181 ~~~V~~l~~~~ 191 (807)
...|+.|+|++
T Consensus 374 kSWVs~VaFDp 384 (636)
T KOG2394|consen 374 KSWVSVVAFDP 384 (636)
T ss_pred ccceeeEeecc
Confidence 99999999996
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=118.03 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=110.5
Q ss_pred CCceeeeecCCCCccccCCCceEEEEecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCC
Q 003625 36 EPRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDD 114 (807)
Q Consensus 36 ~~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~D 114 (807)
.|..++.--.+.+..+ ||+|+|++||+.+.||.++|||.+... +..++..-+...|++|||||++|++|+.|
T Consensus 281 NPv~~w~~~~g~in~f-------~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEF-------AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred CccceeEeccccccce-------eEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence 5666665555555555 899999999999999999999997554 34456667789999999999999999999
Q ss_pred CcEEEEeccCCceeE-EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE----EEEcccCC--ccceEeecCCcCeEE
Q 003625 115 GSVVINSLFTDEKMK-FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY----LNSKKWLG--YRDQVLHSGEGPVHV 186 (807)
Q Consensus 115 g~v~iwd~~~~~~~~-~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~----l~~~~~~~--~~~~~~~~~~~~V~~ 186 (807)
--|.||.+..+++.. =++|+ +|..|+|+| |.......--..+.|++.. -...+..+ .....-......+.+
T Consensus 354 DLVtVwSf~erRVVARGqGHkSWVs~VaFDp-ytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~ 432 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQGHKSWVSVVAFDP-YTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS 432 (636)
T ss_pred ceEEEEEeccceEEEeccccccceeeEeecc-cccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence 999999999887765 47788 999999998 4433222211112222210 00000000 000000000112233
Q ss_pred EEEeCCEEEEEeCCcEEEEEcCCCceE
Q 003625 187 VKWRTSLIAWANDAGVKVYDAANDQRI 213 (807)
Q Consensus 187 l~~~~~~la~~~d~~v~iwd~~~~~~~ 213 (807)
+.+ ++=.++.|..+.+||+......
T Consensus 433 v~Y--RfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 433 VTY--RFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred eEE--EeecccccceEEEEecchhhcc
Confidence 333 4667888999999999876543
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=8.7e-10 Score=114.90 Aligned_cols=167 Identities=17% Similarity=0.179 Sum_probs=116.2
Q ss_pred EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EE-ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE
Q 003625 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (807)
..+.+|++-|+++.|+.+|.+|+|||+|-.+.|||....+.. .+ .+|. .|.|+.|-|.. +.+.+++|..|..|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---CCeEEEeccCcceEE
Confidence 467899999999999999999999999999999999875543 33 6677 99999999972 357999999999999
Q ss_pred EEEcccCC---------ccceEeecCCcCeEEEEEe--C--CEEEEEeCCcEEEEEcCCCceEE-eeeCCCC-----CCC
Q 003625 164 LNSKKWLG---------YRDQVLHSGEGPVHVVKWR--T--SLIAWANDAGVKVYDAANDQRIT-FIERPRG-----SPR 224 (807)
Q Consensus 164 l~~~~~~~---------~~~~~~~~~~~~V~~l~~~--~--~~la~~~d~~v~iwd~~~~~~~~-~i~~~~~-----~~~ 224 (807)
+++..-.. .+...+..|...|..++-. + .+.+++.||+++-||++....-. ....+.. ...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99875211 2334445577778777776 2 34444579999999998532111 1000000 000
Q ss_pred CCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeC
Q 003625 225 PELLLPHLVWQDDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 225 ~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
.....+.+.-++..+|++| .|-..++||.+.-
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~ 233 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRV 233 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhh
Confidence 1111222333477889999 7778999996543
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=5.2e-09 Score=103.60 Aligned_cols=153 Identities=14% Similarity=0.289 Sum_probs=113.4
Q ss_pred cCCEEEEEecCCeEEEEecCCCe---eEEecCCC-cceeEEEEcCCCCEEEEEeC----CCcEEEEeccCCc--eeE-Ee
Q 003625 63 AERMIALGTHAGTVHILDFLGNQ---VKEFPAHT-AAVNDLSFDVDGEYVGSCSD----DGSVVINSLFTDE--KMK-FD 131 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~-~~V~~l~~s~~g~~l~s~~~----Dg~v~iwd~~~~~--~~~-~~ 131 (807)
.+..+.+|+.||+|++||..... ...+.+|. .+..+++.+..++.+++|.. +-.|.+||++..+ +.. ..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 46688899999999999994222 44556666 46677777767888888763 5679999999843 333 46
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc--eEeecCCcCeEEEEEe--C--CEEEEEeCCcEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD--QVLHSGEGPVHVVKWR--T--SLIAWANDAGVKV 204 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~--~~~~~~~~~V~~l~~~--~--~~la~~~d~~v~i 204 (807)
.|. -|+++.|+|+ +.+.+++|+.||-|.++|..-+.... .....+...|.++.|. + ++...+...+..+
T Consensus 163 SH~DDVT~lrFHP~----~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~ 238 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPS----DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAI 238 (376)
T ss_pred hccCcceeEEecCC----CCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeE
Confidence 677 9999999998 57899999999999999876443221 2222356679999999 3 5455557999999
Q ss_pred EEcCCCceEEeeeCC
Q 003625 205 YDAANDQRITFIERP 219 (807)
Q Consensus 205 wd~~~~~~~~~i~~~ 219 (807)
|++..+.....++.+
T Consensus 239 ~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 239 YELEDGSEETWLENP 253 (376)
T ss_pred EEccCCChhhcccCc
Confidence 999988766655554
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.07 E-value=2.3e-09 Score=114.00 Aligned_cols=198 Identities=17% Similarity=0.236 Sum_probs=135.9
Q ss_pred ceeeeecCCCCccccCCCc--eEE--EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC
Q 003625 38 RLKYQRMGGSLPSLLANDA--ASC--VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD 113 (807)
Q Consensus 38 ~l~~~~~~~~~~~~~~~~~--i~~--~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~ 113 (807)
.+-|..-.+..-..+++|. |.| ++.+|+.+|+|+.|..|.+|+..-.-+..+ .|++.|.|++|+|-.+.++||+-
T Consensus 35 lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY-SH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY-SHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-ccCCeeeEeecCchHHHhhhcch
Confidence 4445555555555555543 544 677999999999999999999853333333 59999999999999999999986
Q ss_pred CCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEe---ecCCcCeEEEEEe
Q 003625 114 DGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL---HSGEGPVHVVKWR 190 (807)
Q Consensus 114 Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~---~~~~~~V~~l~~~ 190 (807)
+ ..-+|+.....+.+......+.+++|..+ |++++.|-.+|+|.+-+. .+.....+ .+.+.+|.+++|+
T Consensus 114 s-dFglWS~~qK~V~K~kss~R~~~CsWtnD-----GqylalG~~nGTIsiRNk--~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 114 S-DFGLWSPEQKSVSKHKSSSRIICCSWTND-----GQYLALGMFNGTISIRNK--NGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred h-hccccChhhhhHHhhhhheeEEEeeecCC-----CcEEEEeccCceEEeecC--CCCcceEEeCCCCCCCCceEEEec
Confidence 4 46678776655555555558999999999 999999999999998643 34333333 3467899999999
Q ss_pred C-------CEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEE
Q 003625 191 T-------SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIA 251 (807)
Q Consensus 191 ~-------~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw 251 (807)
+ ..++.. ...++.+|.+.. +.+.. ......-++|+.+ .+|.++.+| .|+.+++|
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk------~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f 249 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLSG-KQIGK------DRALNFDPCCISYFTNGEYILLGGSDKQLSLF 249 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEecc-eeecc------cccCCCCchhheeccCCcEEEEccCCCceEEE
Confidence 2 456655 467777777753 33321 0111122445554 477777776 67666555
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=7.1e-09 Score=114.71 Aligned_cols=104 Identities=26% Similarity=0.332 Sum_probs=78.5
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCC-----CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEe
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLG-----NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFD 131 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~ 131 (807)
+.+++|+++++|+|..||.|.+|.--+ ...+.++-|...|++++|+++|.+|.|||..|.+.+|.+.+++..-+.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 356899999999999999999997644 125667779999999999999999999999999999999987632232
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (807)
.-. +|..+.++|+ +...+....|..|.+.
T Consensus 290 RLgs~I~~i~vS~d-----s~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 290 RLGSPILHIVVSPD-----SDLYSLVLEDNQIHLI 319 (792)
T ss_pred ccCCeeEEEEEcCC-----CCeEEEEecCceEEEE
Confidence 222 6666666666 4454444445554443
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.07 E-value=7.9e-09 Score=117.61 Aligned_cols=211 Identities=18% Similarity=0.194 Sum_probs=138.0
Q ss_pred eecCCCCccccCCCc-----eEEEEecCCEEEEEecCCeEEEEecC---CC--e---eEEecCCCcceeEEEEcCCCCEE
Q 003625 42 QRMGGSLPSLLANDA-----ASCVAVAERMIALGTHAGTVHILDFL---GN--Q---VKEFPAHTAAVNDLSFDVDGEYV 108 (807)
Q Consensus 42 ~~~~~~~~~~~~~~~-----i~~~s~~~~~la~gs~dg~I~i~d~~---~~--~---~~~~~~h~~~V~~l~~s~~g~~l 108 (807)
|+.+|.+.+.+..|. +...++++.++++|+.||+|++|+.. |. . ..++....+++.++...+.|+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 344454444444333 22234467899999999999999983 22 1 23444456789999999999999
Q ss_pred EEEeCCCcEEEEeccC--Cc-----------------e------------------------eEE--------------e
Q 003625 109 GSCSDDGSVVINSLFT--DE-----------------K------------------------MKF--------------D 131 (807)
Q Consensus 109 ~s~~~Dg~v~iwd~~~--~~-----------------~------------------------~~~--------------~ 131 (807)
|.++.||.|.+.+++. .. + ..+ .
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 9999999999988664 11 0 000 0
Q ss_pred cCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---C--CEEEEE---eCCcEE
Q 003625 132 YHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T--SLIAWA---NDAGVK 203 (807)
Q Consensus 132 ~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~--~~la~~---~d~~v~ 203 (807)
.|..|++++.+|. ++++++|+..|.+.+||.++.-.....-+.+..+|..+..+ + ...+++ +.+.|.
T Consensus 1194 ~hG~vTSi~idp~-----~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPW-----CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred cccceeEEEecCC-----ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 1237889999998 89999999999999999986433333334566788888777 3 343333 467799
Q ss_pred EEEcCCCceEEeeeCCCCCCCCC-------------CCCCeeee-eCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 204 VYDAANDQRITFIERPRGSPRPE-------------LLLPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~-------------~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+|++.+|.+...+....+.+... ........ ..+..+.+| .|+.|+.||.....
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 99999987666554431111100 00001111 244556666 89999999987655
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=6.1e-09 Score=116.65 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=127.5
Q ss_pred cCCEEEEEecCCeEEEEec--CC--C--eeEEecC-------CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-
Q 003625 63 AERMIALGTHAGTVHILDF--LG--N--QVKEFPA-------HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM- 128 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~--~~--~--~~~~~~~-------h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~- 128 (807)
+..++.+|+.||.|+||+- ++ + .+..+.+ ..+.=.-+.|.....+|+++|+-..|+|||.....+.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 4558899999999999976 22 1 1322222 1111133678887777888877889999999986554
Q ss_pred EEecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc--cceEeecCCcC--eEEEEEe----CCEEEEEe
Q 003625 129 KFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGP--VHVVKWR----TSLIAWAN 198 (807)
Q Consensus 129 ~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~~~~~~~~--V~~l~~~----~~~la~~~ 198 (807)
.+.... .|+++.-+-. .|+.++.|..||.|++||.+.... .+.....|+.. |..+.+. +.+++++.
T Consensus 1202 diP~~s~t~vTaLS~~~~----~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV----HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred ecccCCCccceeeccccc----CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence 343333 7777655444 379999999999999999885543 45666677766 9899888 45677779
Q ss_pred CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
||.|++||++.......+...... ..+...+++.-. ....+++|..+.|+||++....
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~-~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHW-EYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred CCeEEEEecccCcccccceeeecc-ccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 999999999975333222111100 001113344443 6678899977999999997654
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=5.6e-09 Score=101.04 Aligned_cols=187 Identities=12% Similarity=0.157 Sum_probs=131.7
Q ss_pred EEEecC-----CEEEEEecCCeEEEEecCC--Cee--------EEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEec
Q 003625 59 CVAVAE-----RMIALGTHAGTVHILDFLG--NQV--------KEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSL 122 (807)
Q Consensus 59 ~~s~~~-----~~la~gs~dg~I~i~d~~~--~~~--------~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~ 122 (807)
.|.|+. ..||+. +-.+++|.... ..+ .+-..+.+++++..|+. +-++|.++|-|-+..|||+
T Consensus 103 ~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred EecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 466653 355544 45799999842 211 11233667999999985 5678999999999999999
Q ss_pred cCCc---ee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC--CcCeEEEEEe---CC
Q 003625 123 FTDE---KM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWR---TS 192 (807)
Q Consensus 123 ~~~~---~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~--~~~V~~l~~~---~~ 192 (807)
.++. +. .+-.|. .|..|+|... +-+.|++.|.||.|++||.+-.....-+.... ..+...++|+ ++
T Consensus 181 e~~~~~~vkTQLIAHDKEV~DIaf~~~----s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn 256 (364)
T KOG0290|consen 181 ETGVSGTVKTQLIAHDKEVYDIAFLKG----SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN 256 (364)
T ss_pred eeccccceeeEEEecCcceeEEEeccC----ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch
Confidence 9863 23 344555 9999999886 45799999999999999998433333333322 4578889998 67
Q ss_pred EEEEE--eCCcEEEEEcCC-CceEEeeeCCCCCCCCCCCCCeeeee--CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 193 LIAWA--NDAGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQ--DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 193 ~la~~--~d~~v~iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~--~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
++|+- ....|.|.|++. ...+..+..| ...+..++|. ....++++ .|-.+-+||+.+-.
T Consensus 257 ymATf~~dS~~V~iLDiR~P~tpva~L~~H------~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 257 YMATFAMDSNKVVILDIRVPCTPVARLRNH------QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred HHhhhhcCCceEEEEEecCCCcceehhhcC------cccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 88876 456799999985 3455555444 4458889995 45666766 55568999998654
No 203
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.7e-07 Score=104.75 Aligned_cols=346 Identities=14% Similarity=0.120 Sum_probs=247.2
Q ss_pred HHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCC--CCCHHHHHHHHHHHhcCCCC
Q 003625 429 VGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENP--RLRDTAYEVALVALATNPSF 506 (807)
Q Consensus 429 i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~--~l~~~~~~~~L~~~~~~~~~ 506 (807)
++++-...++.++.|.-| ++|...+---..+-|++|..+-++|..+.|+..+..... |.-=..||.+--.|.+- .
T Consensus 1251 tWK~VcfaCvd~~EFrlA-QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky--k 1327 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY--K 1327 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc--C
Confidence 455555566666666443 555443333367778888888888888888877766522 22234455555556554 4
Q ss_pred hHHHHHHhhc-CCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccC-----cchhhHhhhc
Q 003625 507 HKYLLSTVKS-WPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK-----PYIFDFIENH 580 (807)
Q Consensus 507 ~~~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~-----~~~~~~i~~~ 580 (807)
++++.+-++. |. --+++.++.++++.. +..+|.+||.+-..|+-|.-.++.... ...-+.|.+-
T Consensus 1328 p~km~EHl~LFws--RvNipKviRA~eqah--------lW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kV 1397 (1666)
T KOG0985|consen 1328 PEKMMEHLKLFWS--RVNIPKVIRAAEQAH--------LWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKV 1397 (1666)
T ss_pred HHHHHHHHHHHHH--hcchHHHHHHHHHHH--------HHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHH
Confidence 5677666654 42 346788899988877 999999999999999999999887632 2345666777
Q ss_pred cchHHHHHHHHHHHhcChhHHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 003625 581 NLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELY 660 (807)
Q Consensus 581 ~~~~~~~~~~~~l~~~~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly 660 (807)
.-.++.++.+...++..|--..++|+.-...++..+++..|...+ .-.+...||..+-.. ....+.+.|-.||
T Consensus 1398 aNvElyYkAi~FYl~~~P~llnDlL~vL~pRlDh~r~v~~f~K~~----~lpLikpyl~~vq~~---Nn~avNealn~l~ 1470 (1666)
T KOG0985|consen 1398 ANVELYYKAIQFYLDFHPLLLNDLLTVLSPRLDHTRTVSIFSKAG----QLPLIKPYLRAVQSL---NNKAVNEALNDLL 1470 (1666)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHhcccccCchHHHHHHHhcC----CCcccHHHHHHHHhc---chHHHHHHHHHHh
Confidence 777888888888888889888888887556688899999998753 445566788776433 3345555566666
Q ss_pred HH-hchHHHHHHhhcCCCCCHHHHHHHHhcCCch---hHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHH
Q 003625 661 AD-YDLKMLLPFLRSSQHYTLEKAYEICVKRDLL---REQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELW 736 (807)
Q Consensus 661 ~~-~~~~kl~~fL~~~~~y~~~~al~~~~~~~~~---~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw 736 (807)
++ .+.+.|.+=+...++||-=..-+..+++.+. +-.||||.+.++|.+.+.+.-.+ +-++.|++++....+.++=
T Consensus 1471 ieeEDy~~Lr~sid~~D~FD~i~LAq~lEkH~L~efrriaAylyk~n~rW~qSiel~Kkd-~lyKDame~Aa~S~~~~la 1549 (1666)
T KOG0985|consen 1471 IEEEDYQGLRDSIDAYDNFDNIGLAQRLEKHELVEFRRIAAYLYKGNNRWKQSIELCKKD-KLYKDAMETAAESRDTELA 1549 (1666)
T ss_pred hhHHHHHHHHHhhhhhcchhHHHHHHHhhhhhhHHHHHHHHHHHhccchHHHHHHHhhhh-hHHHHHHHHHHhcCChHHH
Confidence 63 4677777777777777755555566666654 45799999999999999988765 6689999999999999999
Q ss_pred HHHHHHhcCCch--HHHHHHHhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHHH
Q 003625 737 EELIKQCLNKPE--MVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETS 795 (807)
Q Consensus 737 ~~ll~~~~~~~~--~~~~lL~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~~ 795 (807)
..||.|.++... -....|=.....+-|..|+++-=.+--++-..+|+++.+++|...+.
T Consensus 1550 e~Ll~~F~e~g~~ecFaa~Ly~cYdLlrpd~vlElaW~~~l~D~a~Py~iq~~~ey~~kv~ 1610 (1666)
T KOG0985|consen 1550 EELLQYFLEEGKRECFAACLYTCYDLLRPDVVLELAWRHNLMDYAMPYFIQVMREYLSKVD 1610 (1666)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcChHHHHHHHHHhhhHHhhhHHHHHHHHHHHHHHH
Confidence 999999995433 23334433344567777777655555566778999999999987764
No 204
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.00 E-value=3.7e-09 Score=113.49 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=122.7
Q ss_pred EEecCCCcceeEEEEcCCCCEEEEEeCCC-----cEEEEeccC-CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCC
Q 003625 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA 159 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (807)
+.+.+|.-.|++++.+|+|+.+||++... .|++|+..+ .+...+.+|. .|+.++|+|+ ++++++.+.|
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpd-----g~~LLsvsRD 593 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPD-----GRYLLSVSRD 593 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCC-----CcEEEEeecC
Confidence 34568999999999999999999998754 489999988 4555799999 9999999999 9999999999
Q ss_pred CeEEEEEcccCC---ccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCC--ceEEeeeCCCCCCCCCCCCCe
Q 003625 160 GHLYLNSKKWLG---YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAND--QRITFIERPRGSPRPELLLPH 231 (807)
Q Consensus 160 g~v~l~~~~~~~---~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~--~~~~~i~~~~~~~~~~~~~~~ 231 (807)
+++.+|...-+. ......+.|..-|.++.|+ +.+++++ .|.+|++|..... +.+..+ ....++..++.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~----a~~~~~~aVTA 669 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF----ACLKFSLAVTA 669 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh----chhccCCceee
Confidence 999999764222 2223366788889999999 4657766 6999999998876 333222 12333445666
Q ss_pred eeee------CCCEEEEE-eCCcEEEEEEe
Q 003625 232 LVWQ------DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 232 l~~~------~~~~l~~g-~d~~i~vw~~~ 254 (807)
++|. .+..+++| ..|.|.+|...
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 6663 34578899 99999999865
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1.5e-08 Score=113.69 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=133.0
Q ss_pred ceEEEEecCCEEEEEecCCeEEEEecCCCe-eEEecC-CCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCC----cee
Q 003625 56 AASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPA-HTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTD----EKM 128 (807)
Q Consensus 56 ~i~~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~-h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~----~~~ 128 (807)
.++.|.....+|.+++.-..|+|||..... +..+.. ....|++++-+. .|+.+++|..||.|++||.+.. .+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 356676655555566668899999996554 344433 344677776543 4799999999999999998862 233
Q ss_pred EEecCC---ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC-CccceEeecCC--c-CeEEEEEe--CCEEEEEeC
Q 003625 129 KFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-GYRDQVLHSGE--G-PVHVVKWR--TSLIAWAND 199 (807)
Q Consensus 129 ~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~~~~~~~~~~~--~-~V~~l~~~--~~~la~~~d 199 (807)
....|. +|..+.+-+. +-..+++|+.+|.|.+||.+.. ......+..|. | ..+++..+ ..++|+|+.
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~----G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQ----GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred eecccCCcccceeEEeecC----CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 455555 5999999886 2346999999999999999852 22222222332 4 58888888 688999977
Q ss_pred CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCC-EEEEE-eCCcEEEEEEeeCC
Q 003625 200 AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDT-LLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 200 ~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~-~l~~g-~d~~i~vw~~~~~~ 257 (807)
+.|+||++...+.......+.-.......+.|++|..-+ ++++| .|++|.||....+.
T Consensus 1325 q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999987544322222222112223345778887544 56667 78889999776543
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.98 E-value=1.9e-08 Score=114.68 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=128.4
Q ss_pred EecCCCeeEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccC--Cc--e----eEEe-cCCceEEEEeCCCCCCc
Q 003625 79 LDFLGNQVKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFT--DE--K----MKFD-YHRPMKAISLDPDYTRK 148 (807)
Q Consensus 79 ~d~~~~~~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~--~~--~----~~~~-~~~~v~~v~~~p~~~~~ 148 (807)
|+..|..+..+..|+..|..++.++.. .+++|||.||+|++|+++. +. . .++. ....+.++...++
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN---- 1109 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC----
Confidence 777888888999999999999887655 9999999999999999876 22 1 1333 2338999999888
Q ss_pred CCCEEEEecCCCeEEEEEcccC-Ccc-----ceEeec-CCcCeEEE-EEe---CC-EEEEE-eCCcEEEEEcCCCceEEe
Q 003625 149 MSRRFVAGGLAGHLYLNSKKWL-GYR-----DQVLHS-GEGPVHVV-KWR---TS-LIAWA-NDAGVKVYDAANDQRITF 215 (807)
Q Consensus 149 ~~~~l~~g~~dg~v~l~~~~~~-~~~-----~~~~~~-~~~~V~~l-~~~---~~-~la~~-~d~~v~iwd~~~~~~~~~ 215 (807)
+..+|+|+.||.|.+....-. ..+ ...... ..|.+..+ +|. +. .++.+ ..+.|..||+++...+..
T Consensus 1110 -~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1110 -GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred -CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 899999999999999876431 111 111111 23444333 333 33 45555 678899999998766555
Q ss_pred eeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcceEEEE
Q 003625 216 IERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVDIV 276 (807)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (807)
++.+. .|+ .+++++-+ .+.++++| ..|.+-+||++-+.....+..+...+...+.+.
T Consensus 1189 lk~~~---~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1189 LKNQL---RHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred hhcCc---ccc-ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 44332 221 34555554 56689999 889999999998876555544444454554433
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.98 E-value=2e-10 Score=125.17 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=102.8
Q ss_pred EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
+.+.+|..+|+|..|+..|.++++|++|..|+||...++.+. ...+|. .|+.++.+.+ ...+++++.|..|++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-----n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-----NTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-----hhhhhhcccCceEEE
Confidence 345689999999999999999999999999999999987765 578888 9999999887 678999999999999
Q ss_pred EEcccCCccceEeecCCcCeEEEEEeCCEEEEEeCCcEEEEEcC
Q 003625 165 NSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~V~~l~~~~~~la~~~d~~v~iwd~~ 208 (807)
|... ++..+.++.+|+|.|++++|++.- +++.||++++||.+
T Consensus 259 Wrl~-~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 259 WRLP-DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR 300 (1113)
T ss_pred EecC-CCchHHHHhccccceeeeccCccc-cCCCCCceEecccc
Confidence 9876 788899999999999999999654 55579999999998
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.98 E-value=1.4e-07 Score=94.73 Aligned_cols=187 Identities=12% Similarity=0.208 Sum_probs=130.7
Q ss_pred eEEEEecCCEEEEEecC--CeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEec
Q 003625 57 ASCVAVAERMIALGTHA--GTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (807)
Q Consensus 57 i~~~s~~~~~la~gs~d--g~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (807)
|.-+-....++|..+.+ +.+++++..... +-.+ ....+|.++.++ .++|+.+-.+ .|+|||+++-++. ++..
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~-~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI-FFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIET 124 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEE-ecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhc
Confidence 44555666777666553 347777774333 3222 244578888876 4567766655 4999999986554 3432
Q ss_pred C--C--ceEEEEeCCCCCCcCCCEEEEe--cCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCc--E
Q 003625 133 H--R--PMKAISLDPDYTRKMSRRFVAG--GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAG--V 202 (807)
Q Consensus 133 ~--~--~v~~v~~~p~~~~~~~~~l~~g--~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~--v 202 (807)
. . .+.++.+++. +.+++.- ...|.|.+|+.. +-.....+..|++++.+++|+ |.++|++++.+ |
T Consensus 125 ~~~n~~gl~AlS~n~~-----n~ylAyp~s~t~GdV~l~d~~-nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNA-----NCYLAYPGSTTSGDVVLFDTI-NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred cCCCccceEeeccCCC-----CceEEecCCCCCceEEEEEcc-cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 2 2 4544444444 4566654 346889999875 557788889999999999999 99999996543 8
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
||+.+.+|+.+..+.+... ...+.+++|+ ++++|+++ ..++|++|.+....
T Consensus 199 RVf~v~~G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEcCCccEeeeeeCCce----eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999998877643 2346788886 56666666 78899999998654
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.1e-07 Score=95.03 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=103.8
Q ss_pred eEE--EEe-cCCEEEEEecCCeEEEEecCCCe---------------eEEecCCCcceeEEEEcCCCCEEEEEeC-CCcE
Q 003625 57 ASC--VAV-AERMIALGTHAGTVHILDFLGNQ---------------VKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSV 117 (807)
Q Consensus 57 i~~--~s~-~~~~la~gs~dg~I~i~d~~~~~---------------~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v 117 (807)
++| |-| .++.+++|+..| |.+|..+... +....+| .+|+++.|++||..+++++- |..|
T Consensus 143 vtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi 220 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSI 220 (445)
T ss_pred eeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceE
Confidence 555 556 566888888765 7899763211 1222345 58999999999999999875 6789
Q ss_pred EEEeccCCceeEEecC--CceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCE
Q 003625 118 VINSLFTDEKMKFDYH--RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSL 193 (807)
Q Consensus 118 ~iwd~~~~~~~~~~~~--~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~ 193 (807)
.|||.+++....+... ..++-+.|+|+ +..+.+++-|+..++|...-.-.+.+ .....+.|...+|+ |++
T Consensus 221 ~iWdpdtg~~~pL~~~glgg~slLkwSPd-----gd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 221 MIWDPDTGQKIPLIPKGLGGFSLLKWSPD-----GDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSF 294 (445)
T ss_pred EEEcCCCCCcccccccCCCceeeEEEcCC-----CCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCE
Confidence 9999999877665432 38889999999 89999999999999994431111111 12235589999999 788
Q ss_pred EEEEeCCcEEEEEcC
Q 003625 194 IAWANDAGVKVYDAA 208 (807)
Q Consensus 194 la~~~d~~v~iwd~~ 208 (807)
+..+..+.-++|.+.
T Consensus 295 LLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 295 LLFACSGSPRLYSLT 309 (445)
T ss_pred EEEEEcCCceEEEEe
Confidence 777766666777765
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=8.4e-09 Score=107.73 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=109.3
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEe-cCCCcceeEEEEcC--CCCEEEEEeCCCcEEEEeccCCc--------
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEF-PAHTAAVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDE-------- 126 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~-~~h~~~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~-------- 126 (807)
.|+.+|.+|++|+.|-.+.|||.- -+.++.+ .+|...|.++.|-| +.+.++||..|..|+++|+...+
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 688899999999999999999994 4445554 57999999999998 45689999999999999998511
Q ss_pred ---eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceE---------eecCCcCeEEEEEe---
Q 003625 127 ---KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV---------LHSGEGPVHVVKWR--- 190 (807)
Q Consensus 127 ---~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~---------~~~~~~~V~~l~~~--- 190 (807)
...+..|. .|..++-.|+ +.+.|-+++.||+++-+|.+....+... +...--...|+..+
T Consensus 137 ~~~~~~~~cht~rVKria~~p~----~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r 212 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPN----GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR 212 (758)
T ss_pred cchhhhhhhhhhhhhheecCCC----CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCC
Confidence 12245566 8889999998 3589999999999999987642211111 11111234566666
Q ss_pred CCEEEEE-eCCcEEEEEcC
Q 003625 191 TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 191 ~~~la~~-~d~~v~iwd~~ 208 (807)
+.+++.| +|--.++||.+
T Consensus 213 p~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 213 PYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CceEEecCCCchhhhhhhh
Confidence 5778777 78889999954
No 211
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.96 E-value=1.3e-07 Score=104.44 Aligned_cols=190 Identities=23% Similarity=0.360 Sum_probs=139.8
Q ss_pred EEEEecCCEEEEEec-CCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCceeE--Eec
Q 003625 58 SCVAVAERMIALGTH-AGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKMK--FDY 132 (807)
Q Consensus 58 ~~~s~~~~~la~gs~-dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~~--~~~ 132 (807)
.++++++..+++++. ++.+++|+.. +..+..+.+|...|.+++|+|++. .+++++.|+.+++||...+.... +..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~ 240 (466)
T COG2319 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240 (466)
T ss_pred EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence 467888888888886 9999999996 566788888999999999999998 56666999999999888666554 666
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCcEEEEEcC
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~v~iwd~~ 208 (807)
|. .+ ...|+|+ +..+++++.++.+++|+..........+.+|...|.++.|.+ ..++++ .|+.+++|+..
T Consensus 241 ~~~~~-~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 241 HSDSV-VSSFSPD-----GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred CCcce-eEeECCC-----CCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 66 43 3379998 678889999999999988744442333367788999999984 555445 67889999988
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeeeCC-CEEEEE--eCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQDD-TLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~l~~g--~d~~i~vw~~~~~~ 257 (807)
+........ ...+...+..+.|..+ ..++.+ .++.+.+|++....
T Consensus 315 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 315 TGKLLSSLT----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCceEEEee----ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 877666544 1112224556666211 344444 67788889887654
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.96 E-value=1.3e-09 Score=118.91 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=90.4
Q ss_pred eEEEEe--cCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEec
Q 003625 57 ASCVAV--AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (807)
Q Consensus 57 i~~~s~--~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (807)
|.|... .|.++++|+.|..|+||.. ++.+.....+|.+.|+.++.+.+..+++++|.|..|++|.+..+... .+.+
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg 272 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG 272 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc
Confidence 667444 6889999999999999998 46668899999999999999999999999999999999999997765 5788
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
|. .|++++|+|- .+.+.||++++|+.+|
T Consensus 273 htgavtaiafsP~---------~sss~dgt~~~wd~r~ 301 (1113)
T KOG0644|consen 273 HTGAVTAIAFSPR---------ASSSDDGTCRIWDARL 301 (1113)
T ss_pred cccceeeeccCcc---------ccCCCCCceEeccccc
Confidence 88 9999999997 2778889999997553
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=3.4e-08 Score=109.73 Aligned_cols=171 Identities=17% Similarity=0.190 Sum_probs=118.6
Q ss_pred CCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCc
Q 003625 73 AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRK 148 (807)
Q Consensus 73 dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~ 148 (807)
++.|++||.+|...+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.++....+.... ...+++|+|+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD---- 258 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD---- 258 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC----
Confidence 468999999887777777888899999999999999988754 36999999887654443322 4557899999
Q ss_pred CCCEEEEe-cCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--eCCcEEEEEcCCCc-eEEeeeCCCCC
Q 003625 149 MSRRFVAG-GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQ-RITFIERPRGS 222 (807)
Q Consensus 149 ~~~~l~~g-~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~--~d~~v~iwd~~~~~-~~~~i~~~~~~ 222 (807)
++.++++ +.+|.+.+|.....+.....+..+.+.+.+..|+ |+.++.+ .++...||++.... ....+ .+.
T Consensus 259 -G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-- 334 (429)
T PRK01742 259 -GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-- 334 (429)
T ss_pred -CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC--
Confidence 7877765 4688777775543444555566677778889999 6655544 36778888875322 22222 111
Q ss_pred CCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 223 PRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 223 ~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
. .+..|+ ++..++.+..+.+.+||+.++.
T Consensus 335 ----~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~ 364 (429)
T PRK01742 335 ----G--YSAQISADGKTLVMINGDNVVKQDLTSGS 364 (429)
T ss_pred ----C--CCccCCCCCCEEEEEcCCCEEEEECCCCC
Confidence 1 234565 7777777755566778886654
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.93 E-value=1.6e-08 Score=99.45 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=116.7
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec-CCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee----
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---- 128 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~-~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---- 128 (807)
..+|+|..+.|++|+.|..-++|.. ++.. ...+..++..++++.|+|.++.||+||.-..|.||-+....--
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 3479999999999999999999998 5443 4556678999999999999999999999999999988763321
Q ss_pred EE-ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc------------cCC-----ccceEeecCCcCeEEEEE
Q 003625 129 KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK------------WLG-----YRDQVLHSGEGPVHVVKW 189 (807)
Q Consensus 129 ~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~------------~~~-----~~~~~~~~~~~~V~~l~~ 189 (807)
.+ ...+ .|.++.|+|+ +-++++|+.|+..+++..- |.. .....+....|.|.++.|
T Consensus 140 hikkPirStv~sldWhpn-----nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPN-----NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred hhCCccccceeeeeccCC-----cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 12 2223 8999999999 7899999999999998521 111 111122245678999999
Q ss_pred e--CCEEEEE-eCCcEEEEEcCCCc
Q 003625 190 R--TSLIAWA-NDAGVKVYDAANDQ 211 (807)
Q Consensus 190 ~--~~~la~~-~d~~v~iwd~~~~~ 211 (807)
+ |..+++. .|.++.+-|.....
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc
Confidence 9 8889887 79999999987654
No 215
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.92 E-value=1e-08 Score=98.06 Aligned_cols=136 Identities=19% Similarity=0.206 Sum_probs=100.9
Q ss_pred EEEEEeCCCcEEEEeccCCce-----------eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc
Q 003625 107 YVGSCSDDGSVVINSLFTDEK-----------MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (807)
Q Consensus 107 ~l~s~~~Dg~v~iwd~~~~~~-----------~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (807)
++++|..+|.|.+||+.++.. .....|. +|.++.+.+.+ ..=++|+.+..+..|...|.....
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-----~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-----DRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-----cCCcCCCccccceeeeeccccCcc
Confidence 367788999999999998621 2234566 99999998873 334677877789999887763222
Q ss_pred e---EeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCC-CEEEEE-eCC
Q 003625 175 Q---VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDD-TLLVIG-WGT 246 (807)
Q Consensus 175 ~---~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~l~~g-~d~ 246 (807)
+ ...-.+-.|..+... ++++|++ .|+.||||+.++..++..+.-|.. -+.+++|+.+ .+++.| .|+
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa------gvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA------GVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc------ceeEEEeCCCCchhhhccCCc
Confidence 1 122223346777776 7888888 699999999999999988766653 4789999855 777777 899
Q ss_pred cEEEEEE
Q 003625 247 YIKIASI 253 (807)
Q Consensus 247 ~i~vw~~ 253 (807)
.|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=1.1e-06 Score=86.76 Aligned_cols=173 Identities=12% Similarity=0.160 Sum_probs=123.3
Q ss_pred CeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--CceeEEecCC-ceEEEEeCCCCCCcC
Q 003625 74 GTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKMKFDYHR-PMKAISLDPDYTRKM 149 (807)
Q Consensus 74 g~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (807)
..|.|||= ....+.++ ....+|.++.++++ +|+..- .+.|+||...+ .....+.... |=--++..|.. +
T Consensus 75 NkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~---~ 147 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS---N 147 (346)
T ss_pred ceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC---C
Confidence 47899984 35555555 35568999999855 565554 56899999885 2333333222 22234445541 1
Q ss_pred CCEEEE-ecCCCeEEEEEcccCCc-cceEeecCCcCeEEEEEe--CCEEEEEe-CCc-EEEEEcCCCceEEeeeCCCCCC
Q 003625 150 SRRFVA-GGLAGHLYLNSKKWLGY-RDQVLHSGEGPVHVVKWR--TSLIAWAN-DAG-VKVYDAANDQRITFIERPRGSP 223 (807)
Q Consensus 150 ~~~l~~-g~~dg~v~l~~~~~~~~-~~~~~~~~~~~V~~l~~~--~~~la~~~-d~~-v~iwd~~~~~~~~~i~~~~~~~ 223 (807)
...+|. |-.-|+|.+.+..+... ....+..|++.|.|++.+ |.++|+++ .|+ |||||..+|..+..+.+....
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~- 226 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR- 226 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch-
Confidence 234444 55678999998876554 568889999999999999 99999994 554 899999999999988776432
Q ss_pred CCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 224 RPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 224 ~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+.+++++|+ +..+|+++ ..|++.|+.++...
T Consensus 227 ---A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 227 ---ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ---heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 347899996 77788888 77899999998754
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=4.6e-07 Score=101.05 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=114.5
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC---CCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcC
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (807)
..|+++|.+|...+.+..|...+.+.+|+|||+.|+.++. +..|++||+.++....+.... .+.+.+|+|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD----- 256 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD----- 256 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC-----
Confidence 3788999988887788888889999999999999988764 467999999988777665555 7788999999
Q ss_pred CCEE-EEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeC--C--cEEEEEcCCCceEEeeeCCCCC
Q 003625 150 SRRF-VAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAND--A--GVKVYDAANDQRITFIERPRGS 222 (807)
Q Consensus 150 ~~~l-~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d--~--~v~iwd~~~~~~~~~i~~~~~~ 222 (807)
|+.+ ++.+.+|...+|.....+.....+..+.+......|+ |+.++.+++ + .|.+||+.++..... ....
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~~-- 333 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFGG-- 333 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecCC--
Confidence 6665 4556666644443222344445565666667778998 676665542 2 488888876654432 2111
Q ss_pred CCCCCCCCeeeee-CCCEEEEE--eCC--cEEEEEEe
Q 003625 223 PRPELLLPHLVWQ-DDTLLVIG--WGT--YIKIASIK 254 (807)
Q Consensus 223 ~~~~~~~~~l~~~-~~~~l~~g--~d~--~i~vw~~~ 254 (807)
.......|+ ++..++.. ..+ .|.+|++.
T Consensus 334 ----~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 334 ----GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred ----CcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 123346685 66777655 233 46666653
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=3e-07 Score=101.99 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=118.1
Q ss_pred EEEEecCCEEEEEec---CCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEE-eCCC--cEEEEeccCCceeEEe
Q 003625 58 SCVAVAERMIALGTH---AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSC-SDDG--SVVINSLFTDEKMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~---dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-~~Dg--~v~iwd~~~~~~~~~~ 131 (807)
.+|+|+|+.|+..+. +..|++|++.+.....+....+.+....|+|||+.|+.. +.+| .|++||+.++.+..+.
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt 283 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT 283 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc
Confidence 469999998887542 457999999655444444444445678999999988865 4455 4888999988877665
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecC-CCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-e-C--CcEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N-D--AGVK 203 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~-d--~~v~ 203 (807)
.+. .+...+|+|+ ++.++.++. +|...+|.....+.....+..+.+......|+ |+.++.. . + ..|.
T Consensus 284 ~~~~~~~~~~wSPD-----G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 284 DGRSNNTEPTWFPD-----SQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred CCCCCcCceEECCC-----CCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEE
Confidence 555 7788999999 787766654 45566665443444444444444455677888 6777654 3 2 3488
Q ss_pred EEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCc---EEEEEEe
Q 003625 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTY---IKIASIK 254 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~---i~vw~~~ 254 (807)
+||+.++.... +.... ......|+ ++..++.+ .++. +.++++.
T Consensus 359 ~~dl~~g~~~~-Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 359 KQDLATGGVQV-LTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEECCCCCeEE-eCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 89998876443 22111 11245575 67766666 4443 5555553
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.8e-07 Score=93.49 Aligned_cols=190 Identities=13% Similarity=0.174 Sum_probs=132.9
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecC-CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC----Cc-----
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT----DE----- 126 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~----~~----- 126 (807)
..+|+++-..+|+++.|-+|++|+.+......++. ....|++++|-|.+..-++.+-.+.|++|..+. +.
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccc
Confidence 34677777778899999999999997665555544 345799999999765544444456799997653 11
Q ss_pred ------eeEEecCCceEEEEeCCCCCCcCCCEEEEecC-CCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE
Q 003625 127 ------KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA 197 (807)
Q Consensus 127 ------~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~ 197 (807)
+....+|.+|++++|.++ |..+++++- +..|.+|+.. .+..........+.++-+.|+ |.++.++
T Consensus 183 s~~~~qvl~~pgh~pVtsmqwn~d-----gt~l~tAS~gsssi~iWdpd-tg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 183 STHHLQVLQDPGHNPVTSMQWNED-----GTILVTASFGSSSIMIWDPD-TGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccchhheeCCCCceeeEEEEcCC-----CCEEeecccCcceEEEEcCC-CCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 122344559999999999 777777654 5579999986 455555555667889999999 5665555
Q ss_pred -eCCcEEEEEcC-CCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCCCc
Q 003625 198 -NDAGVKVYDAA-NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQSN 259 (807)
Q Consensus 198 -~d~~v~iwd~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~~~ 259 (807)
-|+..++|+.. +......+-.++ .+...+|+ .|..|..+..+.-++|.+...+..
T Consensus 257 t~davfrlw~e~q~wt~erw~lgsg-------rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGSG-------RVQTACWSPCGSFLLFACSGSPRLYSLTFDGED 314 (445)
T ss_pred cccceeeeehhcccceecceeccCC-------ceeeeeecCCCCEEEEEEcCCceEEEEeecCCC
Confidence 79999999544 333333322221 46778896 778888887777778888765543
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.3e-08 Score=104.11 Aligned_cols=176 Identities=15% Similarity=0.209 Sum_probs=128.6
Q ss_pred EEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEec------C----C
Q 003625 67 IALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDY------H----R 134 (807)
Q Consensus 67 la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~------~----~ 134 (807)
|.+|+....|+-+++ .|+.+..+....+.++++..++....|++|+.+|.|-.||.++.. +.++.. + .
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~ 227 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDA 227 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccc
Confidence 445666677888888 577788887788899999999999999999999999999998733 322211 1 1
Q ss_pred --ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe----CCEEEEEeCCcEEEEEcC
Q 003625 135 --PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 135 --~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~----~~~la~~~d~~v~iwd~~ 208 (807)
.|+++.|+.+ |-.+++|+.+|.|.+||.+-......--++..-+|..+.|. +..+++.....++|||-.
T Consensus 228 ~~svTal~F~d~-----gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 228 APSVTALKFRDD-----GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDEC 302 (703)
T ss_pred cCcceEEEecCC-----ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccc
Confidence 5999999988 89999999999999999973222222234456789999996 366777778889999999
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEEEe
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~~~ 254 (807)
+|+....++.... +..+++ .++.++.+| .+..+..|=+.
T Consensus 303 ~Gk~~asiEpt~~-------lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 303 TGKPMASIEPTSD-------LNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCceeeccccCC-------cCceeeecCCceEEEecCCCcceeEEcc
Confidence 9998877654432 222333 366677777 55555555443
No 221
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.90 E-value=3.5e-08 Score=96.23 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=80.7
Q ss_pred EEEecCCEEEE--EecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecC
Q 003625 59 CVAVAERMIAL--GTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYH 133 (807)
Q Consensus 59 ~~s~~~~~la~--gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~ 133 (807)
+|+|+|+.+|+ |..++.|.+||.++..+..+. ...++.+.|||+|+++++|+.+ |.+.+||..+.+......+
T Consensus 66 ~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~ 143 (194)
T PF08662_consen 66 AWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH 143 (194)
T ss_pred EECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence 68999987655 446789999999987777764 4577889999999999998754 6799999997666544444
Q ss_pred CceEEEEeCCCCCCcCCCEEEEecC------CCeEEEEEc
Q 003625 134 RPMKAISLDPDYTRKMSRRFVAGGL------AGHLYLNSK 167 (807)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~------dg~v~l~~~ 167 (807)
..++.++|+|+ |+++++++. |..++||+.
T Consensus 144 ~~~t~~~WsPd-----Gr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 144 SDATDVEWSPD-----GRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred CcEEEEEEcCC-----CCEEEEEEeccceeccccEEEEEe
Confidence 57889999999 999999875 456677754
No 222
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.89 E-value=2.3e-07 Score=102.34 Aligned_cols=186 Identities=19% Similarity=0.343 Sum_probs=139.7
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCC--eeEEecCCC-cceeEEEE-cCCCC-EEEEEeC-CCcEEEEeccC--CceeEE
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGN--QVKEFPAHT-AAVNDLSF-DVDGE-YVGSCSD-DGSVVINSLFT--DEKMKF 130 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~--~~~~~~~h~-~~V~~l~~-s~~g~-~l~s~~~-Dg~v~iwd~~~--~~~~~~ 130 (807)
.+.+.+..++.++.++.+.+|+.... ....+..+. ..+..+.+ ++++. .++.++. |+.+.+|+..+ .....+
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 46667888999999999999999655 566666644 36777777 88888 5555455 99999999997 445567
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecC-CCeEEEEEcccCCccceEeecCCcCeEEEEEe--CC-EEEE-EeCCcEEE
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGL-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TS-LIAW-ANDAGVKV 204 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~-~la~-~~d~~v~i 204 (807)
..|. .|.+++|+|+ +..+++++. ++.+.+|+.. .+.....+.+|...|.+++|+ +. ++++ +.|+.+++
T Consensus 152 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 152 EGHSESVTSLAFSPD-----GKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred ecCcccEEEEEECCC-----CCEEEecCCCCCceEEEEcC-CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 7777 9999999999 778888885 9999999886 356667777799999999999 44 5556 47999999
Q ss_pred EEcCCCceEE-eeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 205 YDAANDQRIT-FIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 205 wd~~~~~~~~-~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
||...+.... .+..+... . ...|+ ++..++++ .++.+++|++....
T Consensus 226 wd~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDS------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EECCCCcEEeeecCCCCcc------e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 9988777766 34333211 1 11454 33466655 89999999998765
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.9e-07 Score=102.67 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=114.4
Q ss_pred EEEEecCCEEEEEec---CCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEE-EEeCCCc--EEEEeccCCceeEEe
Q 003625 58 SCVAVAERMIALGTH---AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGS--VVINSLFTDEKMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~---dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~--v~iwd~~~~~~~~~~ 131 (807)
.+|+|+|+.|+..+. +..|++||+.+.....+..+.+.+.+.+|+|||+.|+ +.+.+|. |++||+.++....+.
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt 286 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT 286 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEcc
Confidence 358999999888764 4689999997665556666777788899999999876 5555655 777788888877766
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEec-CCC--eEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-e-C--Cc
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGG-LAG--HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N-D--AG 201 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg--~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~-d--~~ 201 (807)
.+. ...+.+|+|+ ++.++..+ .+| .|.+++. .+.....+..+.+.+....|+ |+.++.. . . ..
T Consensus 287 ~~~~~~~~~~~spD-----G~~i~f~s~~~g~~~Iy~~d~--~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 287 DSPAIDTSPSYSPD-----GSQIVFESDRSGSPQLYVMNA--DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred CCCCccCceeEcCC-----CCEEEEEECCCCCCeEEEEEC--CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceE
Confidence 555 6678999999 77777665 444 4555553 344444554455567778898 6777665 2 2 34
Q ss_pred EEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 202 v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
|.+||..++.. ..+.... ......|+ +++.++..
T Consensus 360 i~~~d~~~~~~-~~lt~~~-------~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 360 IGVMKPDGSGE-RILTSGF-------LVEGPTWAPNGRVIMFF 394 (435)
T ss_pred EEEEECCCCce-EeccCCC-------CCCCCeECCCCCEEEEE
Confidence 77788765443 2222111 13456786 66666654
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.88 E-value=9.1e-09 Score=98.32 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=115.1
Q ss_pred CceEEEEe---cCC--EEEEEecCCeEEEEecCCC-e----------eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEE
Q 003625 55 DAASCVAV---AER--MIALGTHAGTVHILDFLGN-Q----------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVV 118 (807)
Q Consensus 55 ~~i~~~s~---~~~--~la~gs~dg~I~i~d~~~~-~----------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~ 118 (807)
+.+.|+.. ++. +++.|-.+|.|.+||++.. . ......|..+|.++.+.+.-..=++|+.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 44666552 233 5778899999999999642 2 233456999999999997666667888888999
Q ss_pred EEeccC--Ccee---EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC-
Q 003625 119 INSLFT--DEKM---KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT- 191 (807)
Q Consensus 119 iwd~~~--~~~~---~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~- 191 (807)
.|++.. +.+. .....+ .|..+.+.|+ ++.++++|.||.+++|..+ ......++.-|.+.|.+++|++
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD-----~KIlATAGWD~RiRVyswr-tl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD-----GKILATAGWDHRIRVYSWR-TLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccC-----CcEEeecccCCcEEEEEec-cCCchhhhhhhhcceeEEEeCCC
Confidence 999875 3332 233344 8999999999 8999999999999999876 5688888999999999999993
Q ss_pred -CEEEEE-eCCcEEEEEc
Q 003625 192 -SLIAWA-NDAGVKVYDA 207 (807)
Q Consensus 192 -~~la~~-~d~~v~iwd~ 207 (807)
.++|.+ .|+.|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 566666 7999999986
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.5e-07 Score=101.86 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=116.4
Q ss_pred EEEecCCEEEEEec---CCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEE-EEeCCC--cEEEEeccCCceeEEec
Q 003625 59 CVAVAERMIALGTH---AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDG--SVVINSLFTDEKMKFDY 132 (807)
Q Consensus 59 ~~s~~~~~la~gs~---dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (807)
+|+|+|+.|++++. +..|++||+.+.....+..+.+...+.+|+|+|+.++ +.+.+| .|++||+.++.+..+..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 58999999988764 3479999997655555555555566789999999876 445555 59999999888776655
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCC---cEEE
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA---GVKV 204 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~---~v~i 204 (807)
+. ....++|+|+ ++.++.++ .+|...+|.....+.....+..+.......+|+ |+.++.. .++ .|.+
T Consensus 290 ~~~~~~~~~~spD-----G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 290 HFGIDTEPTWAPD-----GKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred CCCCccceEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 55 5567899999 77777655 455545554433333333333333345567888 7777765 222 5899
Q ss_pred EEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCc--EEEEEE
Q 003625 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTY--IKIASI 253 (807)
Q Consensus 205 wd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~--i~vw~~ 253 (807)
||+.++... .+.... ......|+ ++..++.+ .++. +.++++
T Consensus 365 ~d~~~g~~~-~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 365 MDLSTGSVR-TLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred EECCCCCeE-ECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 999877654 222111 12345676 66666655 3333 555555
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.6e-08 Score=101.47 Aligned_cols=189 Identities=19% Similarity=0.227 Sum_probs=127.2
Q ss_pred EEEecCCE-EEEEecCCeEEEEecCCCeeE-----------------------------EecCCC-------cce----e
Q 003625 59 CVAVAERM-IALGTHAGTVHILDFLGNQVK-----------------------------EFPAHT-------AAV----N 97 (807)
Q Consensus 59 ~~s~~~~~-la~gs~dg~I~i~d~~~~~~~-----------------------------~~~~h~-------~~V----~ 97 (807)
.++|+|++ +|+|...-.|++||+..-.++ ++.-|. -.| .
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR 137 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR 137 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCc
Confidence 57889995 688999999999998432110 000110 011 1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccce
Q 003625 98 DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ 175 (807)
Q Consensus 98 ~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~ 175 (807)
+++++.-..-|.+++....|+-+++..|... .+.... ++++|..+|. ..++++|+.+|.|..||.+ ......
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-----hgLla~Gt~~g~VEfwDpR-~ksrv~ 211 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-----HGLLACGTEDGVVEFWDPR-DKSRVG 211 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-----cceEEecccCceEEEecch-hhhhhe
Confidence 2222222223556666667888888887654 466665 9999999998 7899999999999999987 332222
Q ss_pred Ee------ecCCc-----CeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeC---CC
Q 003625 176 VL------HSGEG-----PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD---DT 238 (807)
Q Consensus 176 ~~------~~~~~-----~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~---~~ 238 (807)
.+ ..|.+ .|+++.|+ |--+++| ++|.|.|||+++.+++..-... ....+..+.|.+ ..
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~-----~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG-----YELPIKKLDWQDTDQQN 286 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC-----CccceeeecccccCCCc
Confidence 22 23333 39999999 5556666 7999999999999887653222 233467788852 35
Q ss_pred EEEEEeCCcEEEEEEeeCCC
Q 003625 239 LLVIGWGTYIKIASIKTNQS 258 (807)
Q Consensus 239 ~l~~g~d~~i~vw~~~~~~~ 258 (807)
.+++.....++||+-.++..
T Consensus 287 ~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 287 KVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred eEEecchHHhhhcccccCCc
Confidence 66666777899999988773
No 227
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.87 E-value=1.8e-06 Score=92.67 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=121.9
Q ss_pred eEEEEecCCEEEEEe-cCCeEEEEecC--CCe--eEEecCCCcceeEEEEcCCCCEEEEEeC-CCcEEEEeccC-Cce--
Q 003625 57 ASCVAVAERMIALGT-HAGTVHILDFL--GNQ--VKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFT-DEK-- 127 (807)
Q Consensus 57 i~~~s~~~~~la~gs-~dg~I~i~d~~--~~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~-~~~-- 127 (807)
..+++|++++|++|+ .++.|.+|+.+ +.. +... ...+....++|+|+|+++++++. ++.|.+|++.+ +.+
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 347889999887764 47889999985 222 1222 23335678999999999888764 88999999974 322
Q ss_pred -e-EEecCCceEEEEeCCCCCCcCCCEE-EEecCCCeEEEEEcccCCccc------eEeecCCcCeEEEEEe--CCEEEE
Q 003625 128 -M-KFDYHRPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRD------QVLHSGEGPVHVVKWR--TSLIAW 196 (807)
Q Consensus 128 -~-~~~~~~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~------~~~~~~~~~V~~l~~~--~~~la~ 196 (807)
. .+.......+++++|+ ++++ ++...++.|.+|+..-.+... .....+ .....+.|+ |+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~p~-----g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 118 PIQIIEGLEGCHSANIDPD-----NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYC 191 (330)
T ss_pred ceeeccCCCcccEeEeCCC-----CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEE
Confidence 1 1223336778899999 6665 556667899999875322111 111122 234678888 567766
Q ss_pred E--eCCcEEEEEcCC--Cc--eEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 197 A--NDAGVKVYDAAN--DQ--RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 197 ~--~d~~v~iwd~~~--~~--~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
+ .+++|.+|++.. +. .+..+...........+...+.++ ++++++++ .++.|.+|++...+
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 5 389999999973 32 233332211111112233345564 67777777 47889999997543
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=6.6e-07 Score=99.32 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=116.0
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcC
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (807)
..|.++|.+|...+.+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.++....+.... .+.+.+|+|+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD----- 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD----- 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-----
Confidence 46888888887767777788889999999999999887743 35999999988776654333 6678999999
Q ss_pred CCEEE-EecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CCcEEEEEc--CCCceEEeeeCCCCC
Q 003625 150 SRRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAGVKVYDA--ANDQRITFIERPRGS 222 (807)
Q Consensus 150 ~~~l~-~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~~v~iwd~--~~~~~~~~i~~~~~~ 222 (807)
++.++ +.+.+|...+|.....+.....+..+.+.+....|+ |+.++..+ ++...||.+ .++.... +....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g-- 327 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTG-- 327 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCC--
Confidence 77665 567788878886654444555555566666778898 67666543 455666655 4443322 22111
Q ss_pred CCCCCCCCeeeee-CCCEEEEE-eCC---cEEEEEEeeCC
Q 003625 223 PRPELLLPHLVWQ-DDTLLVIG-WGT---YIKIASIKTNQ 257 (807)
Q Consensus 223 ~~~~~~~~~l~~~-~~~~l~~g-~d~---~i~vw~~~~~~ 257 (807)
.+.....|+ ++..++.. .++ .|.+|++.++.
T Consensus 328 ----~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 328 ----SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred ----CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 112345675 67777655 332 58889886654
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=2e-07 Score=93.66 Aligned_cols=151 Identities=15% Similarity=0.254 Sum_probs=114.2
Q ss_pred CCceEEEEecCCEEEEEecCCeEEEEecCC-CeeEEe---cCCCcceeEEEEcCCCCEEEEEe--CCCcEEEEeccC-Cc
Q 003625 54 NDAASCVAVAERMIALGTHAGTVHILDFLG-NQVKEF---PAHTAAVNDLSFDVDGEYVGSCS--DDGSVVINSLFT-DE 126 (807)
Q Consensus 54 ~~~i~~~s~~~~~la~gs~dg~I~i~d~~~-~~~~~~---~~h~~~V~~l~~s~~g~~l~s~~--~Dg~v~iwd~~~-~~ 126 (807)
...|.++--+.+.++++-.+. |+|||++. +.++++ ..+...+.++++++.+.+++-=+ ..|.|.+||..+ ..
T Consensus 87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~ 165 (391)
T KOG2110|consen 87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP 165 (391)
T ss_pred CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence 444666666788887776655 99999954 334443 45666788788888888988633 468999999998 55
Q ss_pred eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe-EEEEEcccCCccceEeecCC--cCeEEEEEe--CCEEEEE-eC
Q 003625 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-LYLNSKKWLGYRDQVLHSGE--GPVHVVKWR--TSLIAWA-ND 199 (807)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l~~~~~~~~~~~~~~~~~--~~V~~l~~~--~~~la~~-~d 199 (807)
+..+..|+ ++-|++|+|+ |.++|+++..|+ |+++... .|.+...+..+. ..|.+++|+ +++++++ +.
T Consensus 166 v~~I~aH~~~lAalafs~~-----G~llATASeKGTVIRVf~v~-~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 166 VNTINAHKGPLAALAFSPD-----GTLLATASEKGTVIRVFSVP-EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eeEEEecCCceeEEEECCC-----CCEEEEeccCceEEEEEEcC-CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 56788999 9999999999 999999999998 6777654 566666665433 457889999 6788777 68
Q ss_pred CcEEEEEcCCCc
Q 003625 200 AGVKVYDAANDQ 211 (807)
Q Consensus 200 ~~v~iwd~~~~~ 211 (807)
++|+||.+....
T Consensus 240 eTVHiFKL~~~~ 251 (391)
T KOG2110|consen 240 ETVHIFKLEKVS 251 (391)
T ss_pred CeEEEEEecccc
Confidence 899999987543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=5.1e-07 Score=100.20 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=110.7
Q ss_pred EEEEecCCEEEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEE-EEeCCCcEEEEe--ccCCceeEEe
Q 003625 58 SCVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDGSVVINS--LFTDEKMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg~v~iwd--~~~~~~~~~~ 131 (807)
.+|+|+|+.|+..+.+ ..|++||+.+.....+....+.+.+.+|+|||+.|+ +.+.+|...||. +.++....+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 3699999999887643 469999996554444544445567889999999887 567788766665 4455555555
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCC---cEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA---GVK 203 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~---~v~ 203 (807)
.+. ...+..|+|+ |+.++..+ .+|...+|.....+.....+..+........|+ |+.++.+ .++ .|.
T Consensus 281 ~~~~~~~~~~wSpD-----G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 281 QSSGIDTEPFFSPD-----GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred CCCCCCcCeEEcCC-----CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 444 5667889999 77776554 456677776543333333332222334456787 7787765 333 599
Q ss_pred EEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
+||+.++..... .... ......|+ +++.++.+
T Consensus 356 v~d~~~g~~~~l-t~~~-------~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 356 VQDLATGQVTAL-TDTT-------RDESPSFAPNGRYILYA 388 (427)
T ss_pred EEECCCCCeEEc-cCCC-------CccCceECCCCCEEEEE
Confidence 999988765432 2111 12345776 66666665
No 231
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.83 E-value=6.7e-08 Score=107.00 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=125.2
Q ss_pred CEEEEEecCCeEEEEecCCCe--e----EEecC-------CCcceeEEEEcCC-CCEEEEEeCCCcEEEEe---ccCCc-
Q 003625 65 RMIALGTHAGTVHILDFLGNQ--V----KEFPA-------HTAAVNDLSFDVD-GEYVGSCSDDGSVVINS---LFTDE- 126 (807)
Q Consensus 65 ~~la~gs~dg~I~i~d~~~~~--~----~~~~~-------h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd---~~~~~- 126 (807)
.-+++++.||.|..|+.+.-. . ..... -...+++++|.+. -..++.|+..|.|..-+ ...+.
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 458899999999999874221 0 11111 1236788999874 45688999999988733 33333
Q ss_pred -----eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEE
Q 003625 127 -----KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA 197 (807)
Q Consensus 127 -----~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~ 197 (807)
...+..|. +|.++.++|-+ ...|.+++ |.+|++|.......+...+..+...|++++|+ +.+++++
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~----~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFY----PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccCcceEeeecCCCc----cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 11234444 99999999973 45566666 89999998764445556666677789999999 5667777
Q ss_pred -eCCcEEEEEcCCCc--eEEeeeCCCCCCCCCCCCCeeeeeC-CCEEEEE-eCCcEEEEEEeeC
Q 003625 198 -NDAGVKVYDAANDQ--RITFIERPRGSPRPELLLPHLVWQD-DTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 198 -~d~~v~iwd~~~~~--~~~~i~~~~~~~~~~~~~~~l~~~~-~~~l~~g-~d~~i~vw~~~~~ 256 (807)
.||.+.+||+.... ++...... ....+.+.|+. +..+++| ..|.+.+|++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVC------SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhccccCCccccccc------ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 69999999997543 22222111 23456788875 9999999 8999999999644
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=3.6e-07 Score=90.07 Aligned_cols=107 Identities=19% Similarity=0.337 Sum_probs=86.6
Q ss_pred eEEEEecC--CEEEE-EecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCCCc-EEEEeccCCcee-
Q 003625 57 ASCVAVAE--RMIAL-GTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS-VVINSLFTDEKM- 128 (807)
Q Consensus 57 i~~~s~~~--~~la~-gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~-v~iwd~~~~~~~- 128 (807)
.++++|.. ..||. |-.-|.|.|-|+.... ...+.+|.+.|.|++.+.+|..+||+|..|+ |||||..+|...
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 56676643 35554 5567999999995433 3678899999999999999999999999998 789999987654
Q ss_pred EEecC--C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 129 KFDYH--R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 129 ~~~~~--~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.+... + .|.|++|+|+ +.++++++..|++.++...
T Consensus 219 E~RRG~d~A~iy~iaFSp~-----~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 219 ELRRGVDRADIYCIAFSPN-----SSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eeecCCchheEEEEEeCCC-----ccEEEEEcCCCeEEEEEee
Confidence 44332 2 8999999999 8999999999999999765
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.77 E-value=1.3e-08 Score=104.52 Aligned_cols=186 Identities=16% Similarity=0.198 Sum_probs=144.9
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEE
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKA 138 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~ 138 (807)
..+-+|++++.|+..|.|-.+|.....+..-..-...|.++.|-.+.+++|.+ ....++|||-.+.++.-+..+..|..
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~~~~v~r 214 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKRHIRVAR 214 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhhcCchhh
Confidence 35668999999999999999999554443333345578999999888888766 45689999988877777777779999
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEe
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITF 215 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~ 215 (807)
+.|-|. .-++++++..|.+..-|.. .|..+..+....|.+..++-+ +.++-.| +.|+|.+|...+..++..
T Consensus 215 LeFLPy-----HfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 215 LEFLPY-----HFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred hcccch-----hheeeecccCCceEEEeec-hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 999998 6788889999999877765 566666666677777777777 3455555 799999999998887776
Q ss_pred eeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 216 IERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 216 i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+-.+.+ .+.+++.. +|.+++++ -|..++|||++...
T Consensus 289 iLcH~g------~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 289 ILCHRG------PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHhcCC------CcceEEECCCCcEEeecccccceeEeeecccc
Confidence 555443 46778885 77888877 89999999998754
No 234
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=8.5e-08 Score=96.23 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=112.9
Q ss_pred EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC------CceeEE--ecCC-ceEEEEeCCCCCCcCCCEEEEec
Q 003625 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT------DEKMKF--DYHR-PMKAISLDPDYTRKMSRRFVAGG 157 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~------~~~~~~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~ 157 (807)
+.+.+|.+.|+++.|+.+|++|++||.|..+++|++.. .+...+ ..|+ .|.|++|+.. .+.+.+|+
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-----N~~~~SG~ 124 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-----NRFLYSGE 124 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-----CeeEecCC
Confidence 44568999999999999999999999999999999864 222333 3344 9999999987 78999999
Q ss_pred CCCeEEEEEcccCCccceEeec--CCcCeEEEEEe--CCEEEE-EeCCcEEEEEcCCCc-eEEeeeCCCCCCCCCCCCCe
Q 003625 158 LAGHLYLNSKKWLGYRDQVLHS--GEGPVHVVKWR--TSLIAW-ANDAGVKVYDAANDQ-RITFIERPRGSPRPELLLPH 231 (807)
Q Consensus 158 ~dg~v~l~~~~~~~~~~~~~~~--~~~~V~~l~~~--~~~la~-~~d~~v~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~ 231 (807)
.+|+|...+.. ....+.++.. ..|.|..+..+ .+.+++ +.++.|.+||.+..+ .+..+- +.+.+ .....
T Consensus 125 ~~~~VI~HDiE-t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~---~~F~t 199 (609)
T KOG4227|consen 125 RWGTVIKHDIE-TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSG---KNFYT 199 (609)
T ss_pred CcceeEeeecc-cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCCC---cccee
Confidence 99999998875 3333333332 34688888887 345554 478999999998655 222111 11110 11223
Q ss_pred eeee--CCCEEEEE-eCCcEEEEEEeeCCC
Q 003625 232 LVWQ--DDTLLVIG-WGTYIKIASIKTNQS 258 (807)
Q Consensus 232 l~~~--~~~~l~~g-~d~~i~vw~~~~~~~ 258 (807)
+-|. ...+++++ ..+-+-+||++....
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccc
Confidence 3343 45667777 777799999987653
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.75 E-value=5.2e-05 Score=83.01 Aligned_cols=284 Identities=15% Similarity=0.147 Sum_probs=140.5
Q ss_pred CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC
Q 003625 91 AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (807)
Q Consensus 91 ~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (807)
........++++|+|++++.+ .||...|+.....+.... ..-..++|.+. ..+|+-..+++|.++.. +.
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~---G~g~~~vw~~~------n~yAv~~~~~~I~I~kn-~~ 98 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF---GSGLSFVWSSR------NRYAVLESSSTIKIYKN-FK 98 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE---EE-SEEEE-TS------SEEEEE-TTS-EEEEET-TE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc---CceeEEEEecC------ccEEEEECCCeEEEEEc-Cc
Confidence 344457889999999998885 567777776433222222 23455778876 34677776888998733 23
Q ss_pred CccceEeecCCcCeEEEEEeCCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEE
Q 003625 171 GYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIK 249 (807)
Q Consensus 171 ~~~~~~~~~~~~~V~~l~~~~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~ 249 (807)
......+... ..+..+-. |.++...+++.|.+||+.+++.++.+..+. +..+.|+ ++..++...++.+.
T Consensus 99 ~~~~k~i~~~-~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~--------vk~V~Ws~~g~~val~t~~~i~ 168 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVSA--------VKYVIWSDDGELVALVTKDSIY 168 (443)
T ss_dssp E-TT-----S-S-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-E---------EEEEE-TTSSEEEEE-S-SEE
T ss_pred cccceEEcCC-cccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecCC--------CcEEEEECCCCEEEEEeCCeEE
Confidence 3332233221 12333333 888888888899999999999999876542 4678997 55777777888999
Q ss_pred EEEEeeCCCcC--CCCccccCCcceEEEEEEeeeceEEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeE
Q 003625 250 IASIKTNQSNV--ANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEV 327 (807)
Q Consensus 250 vw~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 327 (807)
+++.+...... ..|. +..++ .....+..|.+-.|.++ ++-|... . .+
T Consensus 169 il~~~~~~~~~~~~~g~-----e~~f~--~~~E~~~~IkSg~W~~d---~fiYtT~--------------------~-~l 217 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGV-----EDAFE--LIHEISERIKSGCWVED---CFIYTTS--------------------N-HL 217 (443)
T ss_dssp EEEE-HHHHHHBTTTB------GGGEE--EEEEE-S--SEEEEETT---EEEEE-T--------------------T-EE
T ss_pred EEEecchhcccccccCc-----hhceE--EEEEecceeEEEEEEcC---EEEEEcC--------------------C-eE
Confidence 99876541000 0000 00112 22222455666777777 3333210 1 22
Q ss_pred EEeccCCcccccCccccCccccccccCcccccccCCCCCCCCCcccCCCCCEEEEECCCcEEEEEeCChhhHH-HHHHhc
Q 003625 328 RIVTWNNDELTTDALPVLGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHI-AWLLEH 406 (807)
Q Consensus 328 ~iv~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i-~~ll~~ 406 (807)
+- +-+++... ..++.-.-|-+... +..+++|++-...-+..-+.+..+-- +..+-+
T Consensus 218 kY--l~~Ge~~~-------i~~ld~~~yllgy~--------------~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~ 274 (443)
T PF04053_consen 218 KY--LVNGETGI-------IAHLDKPLYLLGYL--------------PKENRLYLIDRDGNVISYELDLSELEFKTAVLR 274 (443)
T ss_dssp EE--EETTEEEE-------EEE-SS--EEEEEE--------------TTTTEEEEE-TT--EEEEE--HHHHHHHHHHHT
T ss_pred EE--EEcCCcce-------EEEcCCceEEEEEE--------------ccCCEEEEEECCCCEEEEEECHHHHHHHHHHHc
Confidence 22 11111100 11111112333332 24578888877666666666666544 888999
Q ss_pred ccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhH
Q 003625 407 GWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASL 449 (807)
Q Consensus 407 ~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~ 449 (807)
++|++|+.+.+....-+.--..-+.+.+.+|-++|-.+.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp T-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhh
Confidence 9999999887633321111134577778889899988888877
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.74 E-value=5.9e-08 Score=109.43 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=112.9
Q ss_pred EecCCEEEEEecCCeEEEEecCCCee-EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee--EEecCC-ce
Q 003625 61 AVAERMIALGTHAGTVHILDFLGNQV-KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM--KFDYHR-PM 136 (807)
Q Consensus 61 s~~~~~la~gs~dg~I~i~d~~~~~~-~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~--~~~~~~-~v 136 (807)
+++.-++++|+.-|.|.+|+...... ..+.+|.+.|.++.|+-||++++|+|+|.++++|++.+++.. ..-+|. .|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 33455899999999999999964333 258899999999999999999999999999999999996654 344566 99
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCc-CeEEEEEe-C--CEEEEEeCCcEEEEEcCCC
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEG-PVHVVKWR-T--SLIAWANDAGVKVYDAAND 210 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~-~V~~l~~~-~--~~la~~~d~~v~iwd~~~~ 210 (807)
+.+.|+|+ .+++++.|.+.++|. +.+....++.+|.+ .|..+... + ..++++.|+++++||..+.
T Consensus 222 w~~~~~~n-------~i~t~gedctcrvW~--~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN-------RIITVGEDCTCRVWG--VNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc-------eeEEeccceEEEEEe--cccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999986 799999999999994 45666667777754 47777777 3 3344458999999998754
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.5e-06 Score=96.88 Aligned_cols=170 Identities=15% Similarity=0.149 Sum_probs=113.4
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcC
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (807)
..|.+||.++...+.+..+...+.+.+|+|||+.|+.++.+ ..+++||+.++....+.... ...+++|+|+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpD----- 258 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPD----- 258 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCC-----
Confidence 36899999887777777788889999999999999988743 46999999888766554434 5567899999
Q ss_pred CCEEE-EecCCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CCc--EEEEEcCCCceEEeeeCCC
Q 003625 150 SRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAG--VKVYDAANDQRITFIERPR 220 (807)
Q Consensus 150 ~~~l~-~g~~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~~--v~iwd~~~~~~~~~i~~~~ 220 (807)
++.++ +.+.+|. |.+|+.. +.....+..+.+.....+|+ |+.++.++ ++. |.++++.+++.... ....
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~--~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g 335 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLG--SRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQG 335 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECC--CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCC
Confidence 66554 4555554 7777653 33344455555556678898 67776653 334 66667666654332 1111
Q ss_pred CCCCCCCCCCeeeee-CCCEEEEE--eCC--cEEEEEEeeCC
Q 003625 221 GSPRPELLLPHLVWQ-DDTLLVIG--WGT--YIKIASIKTNQ 257 (807)
Q Consensus 221 ~~~~~~~~~~~l~~~-~~~~l~~g--~d~--~i~vw~~~~~~ 257 (807)
.+.....|+ ++..++.. .++ .|.+|++.++.
T Consensus 336 ------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 336 ------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ------CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 123356786 67777665 222 48888876544
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.71 E-value=0.0001 Score=88.39 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=101.5
Q ss_pred eEEEEecCCEEEEEec---CCeEEEEecCCCeeEEec----CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce--
Q 003625 57 ASCVAVAERMIALGTH---AGTVHILDFLGNQVKEFP----AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-- 127 (807)
Q Consensus 57 i~~~s~~~~~la~gs~---dg~I~i~d~~~~~~~~~~----~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-- 127 (807)
..+|.|.|++||+... ...|.+|..+|-.-..|. .....|..+.|++++..||....|. |.+|...+-.-
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL 339 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL 339 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE
Confidence 5689999999988754 467888988876644432 3456899999999999999987665 99998877331
Q ss_pred -eEEec--CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc-----------cceEeec--------------
Q 003625 128 -MKFDY--HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY-----------RDQVLHS-------------- 179 (807)
Q Consensus 128 -~~~~~--~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~-----------~~~~~~~-------------- 179 (807)
..+.. ...+..+.|+|. ....+.+++.+|.+..++..|.-. ...++.|
T Consensus 340 Kqei~~~~~~~~~~~~Wdpe----~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VP 415 (928)
T PF04762_consen 340 KQEIRFSSSESVNFVKWDPE----KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVP 415 (928)
T ss_pred EEEEEccCCCCCCceEECCC----CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCC
Confidence 12333 335666999997 356777777777776665433210 1111111
Q ss_pred ---------CCcCeEEEEEe--CC-EEEEEeCCcEEEEEcCCC
Q 003625 180 ---------GEGPVHVVKWR--TS-LIAWANDAGVKVYDAAND 210 (807)
Q Consensus 180 ---------~~~~V~~l~~~--~~-~la~~~d~~v~iwd~~~~ 210 (807)
-+.+|.+++|+ +. +.+..+||.+.+|.....
T Consensus 416 PPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 416 PPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred chHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 23678999998 33 555558999999986543
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.2e-06 Score=88.85 Aligned_cols=190 Identities=12% Similarity=0.138 Sum_probs=135.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC-----CCeeEEecCCCcceeEEEEcCCCCE-EEEEeCC--CcEEEEeccCCcee
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL-----GNQVKEFPAHTAAVNDLSFDVDGEY-VGSCSDD--GSVVINSLFTDEKM 128 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~-----~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~D--g~v~iwd~~~~~~~ 128 (807)
|....-....|++|..+|.+.+|... ......+..+ ..+..+.-++...+ +++||.. ..+.|||+... ..
T Consensus 108 I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~q 185 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQ 185 (412)
T ss_pred ccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc-ee
Confidence 33444445678899999999999985 3334444444 35666776765555 5558888 78999999875 22
Q ss_pred EEec------------CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEE
Q 003625 129 KFDY------------HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLI 194 (807)
Q Consensus 129 ~~~~------------~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~l 194 (807)
.+.+ .-+++++.|-|.- ....|++++.-+.|++||.+-..++...+.-.+.+++++... |+++
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~---~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGS---PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCC---CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEE
Confidence 2221 1145677886641 147899999999999999985567777777778889988877 7888
Q ss_pred EEE-eCCcEEEEEcCCCceEEe-eeCCCCCCCCCCCCCeeeeeCC-CEEEEE-eCCcEEEEEEeeCC
Q 003625 195 AWA-NDAGVKVYDAANDQRITF-IERPRGSPRPELLLPHLVWQDD-TLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 195 a~~-~d~~v~iwd~~~~~~~~~-i~~~~~~~~~~~~~~~l~~~~~-~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.++ .-+.+..+|.++++.... +..-.++ +.++...++ .+++++ -|..|+|+|+.+++
T Consensus 263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGs------irsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGS------IRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred EEecccchhheecccCceeeccccCCccCC------cceEEEcCCCceEEeeccceeEEEeecccch
Confidence 888 688999999999887765 4333322 455665544 677766 89999999999866
No 240
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=6.4e-06 Score=91.39 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=109.4
Q ss_pred eEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC---CCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCC
Q 003625 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (807)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (807)
.|.++|.+|...+.+..+...+.+.+|||||+.|+..+. +..+.+|++.+++...+.... .+.+++|+|+ |
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPD-----G 254 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD-----G 254 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCC-----C
Confidence 799999988766666677778999999999999987653 356899999888766544333 5667899999 7
Q ss_pred CEEEEe-cCCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CCcEEEE--EcCCCceEEeeeCCCC
Q 003625 151 RRFVAG-GLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAGVKVY--DAANDQRITFIERPRG 221 (807)
Q Consensus 151 ~~l~~g-~~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~~v~iw--d~~~~~~~~~i~~~~~ 221 (807)
+.++.. +.+|. |.+|+.. +.....+..+...+....|+ |+.++.++ ++...|| |+.++.... +....
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~--tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~- 330 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEG- 330 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECC--CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCC-
Confidence 766654 55554 6666653 33444454555567888998 67666553 3444455 666554432 22211
Q ss_pred CCCCCCCCCeeeee-CCCEEEEE--eCC--cEEEEEEeeCC
Q 003625 222 SPRPELLLPHLVWQ-DDTLLVIG--WGT--YIKIASIKTNQ 257 (807)
Q Consensus 222 ~~~~~~~~~~l~~~-~~~~l~~g--~d~--~i~vw~~~~~~ 257 (807)
.......|+ ++..++.. .++ .|.+|++.++.
T Consensus 331 -----~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 331 -----SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred -----CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 123346675 67777654 233 37777776543
No 241
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.68 E-value=3.1e-06 Score=90.92 Aligned_cols=177 Identities=10% Similarity=0.096 Sum_probs=112.1
Q ss_pred EEEecCCeEEEEecC--CC--eeEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEEeccC-CceeE---EecCCceEE
Q 003625 68 ALGTHAGTVHILDFL--GN--QVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-DEKMK---FDYHRPMKA 138 (807)
Q Consensus 68 a~gs~dg~I~i~d~~--~~--~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~~~~~---~~~~~~v~~ 138 (807)
++...++.|.+|++. +. .+..+. +.+....++++|+|++|++++ .++.|.+|++.. +.+.. .........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 344678999999994 33 234443 345577789999999987654 588899999873 44332 222225678
Q ss_pred EEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEee--cCCcCeEEEEEe--CCEEEEE--eCCcEEEEEcCCCc
Q 003625 139 ISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQ 211 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~--~~~~~V~~l~~~--~~~la~~--~d~~v~iwd~~~~~ 211 (807)
++|+|+ ++.+++++ .+|.|.+|+..-++....... .+.....+++++ |+++.++ .++.|.+||+.+..
T Consensus 85 i~~~~~-----g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 85 ISTDHQ-----GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEECCC-----CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 999999 67666654 578899998753332211111 122345677788 5666444 57899999998643
Q ss_pred eEEe-----eeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEee
Q 003625 212 RITF-----IERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKT 255 (807)
Q Consensus 212 ~~~~-----i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~ 255 (807)
.+.. +..+. ...+..+.|+ ++++++++ .++.|.+|++..
T Consensus 160 ~l~~~~~~~~~~~~-----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 160 HLVAQEPAEVTTVE-----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred cccccCCCceecCC-----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 2211 11111 1123456775 66777666 489999999974
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.67 E-value=2e-06 Score=85.07 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=74.7
Q ss_pred EEEecCCEE-EEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEE-EeCCCcEEEEeccCCceeEEecCC-
Q 003625 59 CVAVAERMI-ALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGSVVINSLFTDEKMKFDYHR- 134 (807)
Q Consensus 59 ~~s~~~~~l-a~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~v~iwd~~~~~~~~~~~~~- 134 (807)
-|+.+..++ +....++.|.+|++.... .-++..-..++.+++|||||++++. ..-|-.|.+|.+.+..+..+...+
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~ 134 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT 134 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc
Confidence 366665554 455778899999995443 5567777888999999999976655 556889999999999988887777
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecC
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGL 158 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~ 158 (807)
.+..++|+|+ |++.+..+.
T Consensus 135 ~~kg~~f~~d-----g~f~ai~sR 153 (447)
T KOG4497|consen 135 NVKGYAFHPD-----GQFCAILSR 153 (447)
T ss_pred CceeEEECCC-----Cceeeeeec
Confidence 8899999999 787777654
No 243
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=3.8e-07 Score=92.31 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=114.8
Q ss_pred cCCEEEEEecC--CeEEEEecCCCeeEEecCCC-----------cceeEEEEcCC--CCEEEEEeCCCcEEEEeccCCc-
Q 003625 63 AERMIALGTHA--GTVHILDFLGNQVKEFPAHT-----------AAVNDLSFDVD--GEYVGSCSDDGSVVINSLFTDE- 126 (807)
Q Consensus 63 ~~~~la~gs~d--g~I~i~d~~~~~~~~~~~h~-----------~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~~~- 126 (807)
+..++|+|+.. ..+.|||+.+. .+.|.+-. --++++.|-+. ...|++++.-+.|++||.+.++
T Consensus 160 ~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 160 DPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred CCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc
Confidence 45678889998 88999999654 33443311 13466778776 7889999999999999999843
Q ss_pred -eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCc
Q 003625 127 -KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAG 201 (807)
Q Consensus 127 -~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~ 201 (807)
+..+.... +++++...|+ ++++.+|...|.+..+|.+-..-....+.+-.|.|+++..++ .++|++ -|+.
T Consensus 239 PV~~fd~~E~~is~~~l~p~-----gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPS-----GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY 313 (412)
T ss_pred ceeEeccccCcceeeeecCC-----CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee
Confidence 45677777 9999999999 899999999999999988722222334677789999999994 588887 5999
Q ss_pred EEEEEcCCCceEEe
Q 003625 202 VKVYDAANDQRITF 215 (807)
Q Consensus 202 v~iwd~~~~~~~~~ 215 (807)
|||+|+.+.+.+..
T Consensus 314 vRIhD~ktrkll~k 327 (412)
T KOG3881|consen 314 VRIHDIKTRKLLHK 327 (412)
T ss_pred EEEeecccchhhhh
Confidence 99999999766653
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=0.0008 Score=78.29 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=71.9
Q ss_pred eEEEEecCCEEEE-----EecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC---CCcEEEEeccC---C
Q 003625 57 ASCVAVAERMIAL-----GTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---DGSVVINSLFT---D 125 (807)
Q Consensus 57 i~~~s~~~~~la~-----gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---Dg~v~iwd~~~---~ 125 (807)
..+|.-+|.++|+ .+..+.|++||..|..-..-..-.+-=.+++|-|.|..+++... |+.|.++.-++ +
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc
Confidence 3578889999988 34448999999986542222222333467899999999998653 55788887654 2
Q ss_pred ce-eEEecCC-ceEEEEeCCCCCCcCCCEEEE---ecCCCeEEEEEc
Q 003625 126 EK-MKFDYHR-PMKAISLDPDYTRKMSRRFVA---GGLAGHLYLNSK 167 (807)
Q Consensus 126 ~~-~~~~~~~-~v~~v~~~p~~~~~~~~~l~~---g~~dg~v~l~~~ 167 (807)
.. ..+.... +|..++|+.+ +..+++ ......|.+|..
T Consensus 280 ~f~l~~p~de~~ve~L~Wns~-----sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 280 EFVLPFPLDEKEVEELAWNSN-----SDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccCCcccccchheeeecCC-----CCceeeeecccccceEEEEEe
Confidence 21 2233444 6999999998 777777 444445999954
No 245
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.63 E-value=4.6e-06 Score=90.92 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=108.5
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecC--CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce----e--
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK----M-- 128 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~----~-- 128 (807)
-+|++..+++++.|++.|.+++|+..++..+.++. -.+.+..++.|++..++|.|+..|.|.++-+..+.. .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 57899999999999999999999998777655544 555677788899999999999999999998876321 1
Q ss_pred EE-ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc---CCccceEeecCCcCeEEEEEeCCEEEEEeCCcEE
Q 003625 129 KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW---LGYRDQVLHSGEGPVHVVKWRTSLIAWANDAGVK 203 (807)
Q Consensus 129 ~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~---~~~~~~~~~~~~~~V~~l~~~~~~la~~~d~~v~ 203 (807)
.. ..|. .|+|++|+++ +..+.+|...|+|.+..... ...+...+..-.+.|-.+.....++..++-....
T Consensus 118 ~~d~~~~~rVTal~Ws~~-----~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~ 192 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKN-----GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI 192 (726)
T ss_pred cccccCCceEEEEEeccc-----ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhhh
Confidence 12 2245 9999999999 89999999999998876542 1123334444567787777774444434323334
Q ss_pred EEEcCCCc
Q 003625 204 VYDAANDQ 211 (807)
Q Consensus 204 iwd~~~~~ 211 (807)
++++..+.
T Consensus 193 Lc~tE~et 200 (726)
T KOG3621|consen 193 LCQTEAET 200 (726)
T ss_pred eeecchhH
Confidence 66665443
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2.3e-06 Score=95.25 Aligned_cols=193 Identities=16% Similarity=0.238 Sum_probs=134.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCC--CeeE---EecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--C---c
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLG--NQVK---EFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--D---E 126 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~--~~~~---~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~---~ 126 (807)
+...++.|++....- +..+++|+... +... .-..|.-.+++.++||+++++|+|..||+|.+|.-.. + .
T Consensus 165 ~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 344555666554443 44577887743 2211 1134777789999999999999999999999996433 2 2
Q ss_pred eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcE
Q 003625 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGV 202 (807)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v 202 (807)
+..+.-|. +|++++|+++ |.++.+||..|.+.+|... ++. .+.+..-.++|..+.++ +.+.+.. .|+.|
T Consensus 244 ~t~lHWH~~~V~~L~fS~~-----G~~LlSGG~E~VLv~Wq~~-T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSD-----GAYLLSGGREGVLVLWQLE-TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ceEEEecccccceeEEecC-----CceEeecccceEEEEEeec-CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 44566666 9999999999 8999999999999999875 233 55666667899999999 5665555 89999
Q ss_pred EEEEcCCCceEEeeeCCCCC-----CCCCCCCCeeeee--CCCEEEEEeCCcEEEEEEeeCC
Q 003625 203 KVYDAANDQRITFIERPRGS-----PRPELLLPHLVWQ--DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~-----~~~~~~~~~l~~~--~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.+....+.....++...... .+.......++.+ .+..+..|..|+|++||+-+..
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence 99988765555554443211 1122233344443 4556667799999999987665
No 247
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.6e-07 Score=92.12 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=104.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc
Q 003625 97 NDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD 174 (807)
Q Consensus 97 ~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~ 174 (807)
.+++|+++|..+++|+.||++|||+..+ ..+.....|+ .|.++.|+|+ |+.+++-+.| ..++|+.. ++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d-----gk~lasig~d-~~~VW~~~-~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD-----GKFLASIGAD-SARVWSVN-TGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC-----CcEEEEecCC-ceEEEEec-cCchh
Confidence 5689999999999999999999999766 3334444444 9999999999 8999999999 89999876 44333
Q ss_pred eEee--cCCcCeEEEEEe--C---C-EEEEE--eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 175 QVLH--SGEGPVHVVKWR--T---S-LIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 175 ~~~~--~~~~~V~~l~~~--~---~-~la~~--~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
.... +.+.....+.|+ + . ++++. .-+.|+.|++.....-..+.... .......+.+++-+ +|.+++.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEe
Confidence 2222 233445667777 2 1 44444 35668888776433322111111 11111235667665 88999999
Q ss_pred -eCCcEEEEEEeeCC
Q 003625 244 -WGTYIKIASIKTNQ 257 (807)
Q Consensus 244 -~d~~i~vw~~~~~~ 257 (807)
.+|.|-|++..+-+
T Consensus 300 T~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQ 314 (398)
T ss_pred ccCCcEEEEEeceee
Confidence 89999999987655
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.60 E-value=3.8e-06 Score=93.51 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=109.9
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcC
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKM 149 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~ 149 (807)
..|.++|.++...+.+..+...+.+.+|+|+|++|+.++.+ ..|++||+.++....+.... .+.+++|+|+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD----- 244 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD----- 244 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC-----
Confidence 36888888777667777777788899999999999887654 47999999988766555444 6778999999
Q ss_pred CCEEE-EecCCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CC--cEEEEEcCCCceEEeeeCCC
Q 003625 150 SRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPR 220 (807)
Q Consensus 150 ~~~l~-~g~~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~--~v~iwd~~~~~~~~~i~~~~ 220 (807)
++.|+ +.+.+|. |.+|+.. +.....+..+.+......|+ |+.++.++ ++ .|.+||+.+++.... ....
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~--~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~ 321 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLD--GKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRG 321 (417)
T ss_pred CCEEEEEECCCCCccEEEEECC--CCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC
Confidence 66555 5555554 6666543 33334444454555567787 66666553 23 477778776654332 2111
Q ss_pred CCCCCCCCCCeeeee-CCCEEEEE-eCC---cEEEEEEee
Q 003625 221 GSPRPELLLPHLVWQ-DDTLLVIG-WGT---YIKIASIKT 255 (807)
Q Consensus 221 ~~~~~~~~~~~l~~~-~~~~l~~g-~d~---~i~vw~~~~ 255 (807)
.......|+ ++..++.+ .++ .|.+|++.+
T Consensus 322 ------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 322 ------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred ------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 124456775 66777766 333 567777654
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.59 E-value=5.5e-06 Score=92.22 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=100.0
Q ss_pred EEEecCCEEEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEE-EeCCC--cEEEEeccCCceeEEec
Q 003625 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDG--SVVINSLFTDEKMKFDY 132 (807)
Q Consensus 59 ~~s~~~~~la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg--~v~iwd~~~~~~~~~~~ 132 (807)
+|+|+|+.++.++.. ..|++||+.+.....+..+.+.+.+++|+|+|+.|+. .+.++ .|++|++.++....+..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 589999999887654 4899999965544455556666778899999998764 44444 58889998877666554
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEec-CCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCC---cE
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDA---GV 202 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~---~v 202 (807)
+. .....+|+|+ ++.++.++ ..|. |.+++. .+.....+..+...+....|+ |++++.+ .++ .|
T Consensus 276 ~~~~~~~~~~s~d-----g~~l~~~s~~~g~~~iy~~d~--~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 276 GPGIDTEPSWSPD-----GKSIAFTSDRGGSPQIYMMDA--DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred CCCCCCCEEECCC-----CCEEEEEECCCCCceEEEEEC--CCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 44 5567789998 77766554 3444 544443 333344444455567778888 6777766 343 68
Q ss_pred EEEEcCCCce
Q 003625 203 KVYDAANDQR 212 (807)
Q Consensus 203 ~iwd~~~~~~ 212 (807)
.+||+.++..
T Consensus 349 ~~~d~~~~~~ 358 (417)
T TIGR02800 349 AVMDLDGGGE 358 (417)
T ss_pred EEEeCCCCCe
Confidence 8888877544
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1.3e-05 Score=89.39 Aligned_cols=182 Identities=10% Similarity=0.042 Sum_probs=108.6
Q ss_pred EEEecCCEEEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEE-EEeCCC--cEEEEeccCCceeEEec
Q 003625 59 CVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVG-SCSDDG--SVVINSLFTDEKMKFDY 132 (807)
Q Consensus 59 ~~s~~~~~la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~-s~~~Dg--~v~iwd~~~~~~~~~~~ 132 (807)
+|+|+|+.|+..+.+ ..|++|++.+.....+....+.+...+|+|||++|+ +.+.+| .|++||+.++....+..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence 699999998876543 368999997555555544445566789999999887 444555 58888998887766655
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CC--cEEE
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKV 204 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~--~v~i 204 (807)
+. ......|+|+ ++.++..+ .+|...+|.....+.....+...........|+ |+.++... ++ .|.+
T Consensus 285 ~~~~~~~~~~spD-----g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~ 359 (430)
T PRK00178 285 HPAIDTEPFWGKD-----GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAA 359 (430)
T ss_pred CCCCcCCeEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEE
Confidence 55 5667889999 67665544 445444443322232222222222233456777 67776652 33 4788
Q ss_pred EEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEE
Q 003625 205 YDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASI 253 (807)
Q Consensus 205 wd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~ 253 (807)
||+.++.... +.... . .....|+ ++..++.+ .++.-++|-+
T Consensus 360 ~dl~tg~~~~-lt~~~-~------~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 360 QDLQRGSVRI-LTDTS-L------DESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred EECCCCCEEE-ccCCC-C------CCCceECCCCCEEEEEEecCCceEEEEE
Confidence 8988776433 22111 0 1123565 66666655 3444334433
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.56 E-value=9.4e-06 Score=80.37 Aligned_cols=187 Identities=11% Similarity=0.145 Sum_probs=113.8
Q ss_pred eEEEEecCC-EEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCC--------------------
Q 003625 57 ASCVAVAER-MIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-------------------- 115 (807)
Q Consensus 57 i~~~s~~~~-~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-------------------- 115 (807)
..+|+|+|+ .+.+...+-.|.+|.+..+...-++-....+..++|+|||++.+.++...
T Consensus 96 ~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~ 175 (447)
T KOG4497|consen 96 SISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK 175 (447)
T ss_pred eeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC
Confidence 457999996 45566678999999997665444444444567889999999887766421
Q ss_pred ----------------cEEEEeccC-CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc-ccC-------
Q 003625 116 ----------------SVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK-KWL------- 170 (807)
Q Consensus 116 ----------------~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~-~~~------- 170 (807)
.+.+||.-- -++..+.....+..++|+|. ++++++|+.|+.+++.+. .|.
T Consensus 176 ~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~-----~qflavGsyD~~lrvlnh~tWk~f~eflh 250 (447)
T KOG4497|consen 176 LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC-----NQFLAVGSYDQMLRVLNHFTWKPFGEFLH 250 (447)
T ss_pred CCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccc-----cceEEeeccchhhhhhceeeeeehhhhcc
Confidence 122232111 11112222238999999998 899999999998887630 000
Q ss_pred ----------------------------------------Cc-----------cceEee------cCCcCeEEEEEe--C
Q 003625 171 ----------------------------------------GY-----------RDQVLH------SGEGPVHVVKWR--T 191 (807)
Q Consensus 171 ----------------------------------------~~-----------~~~~~~------~~~~~V~~l~~~--~ 191 (807)
.. +...++ .....+.-++|+ .
T Consensus 251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00 000000 011235667888 4
Q ss_pred CEEEEEeC---CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCC-CEEEEE-eCCcEEEEEEee
Q 003625 192 SLIAWAND---AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDD-TLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 192 ~~la~~~d---~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~l~~g-~d~~i~vw~~~~ 255 (807)
.++++-+| +.+-+||++..+.-..+.... .+....|..+ ..|++. ....+++|....
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-------piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-------PIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhhcc-------ceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 67777665 458999998765444322211 2556778633 445555 666799997764
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.54 E-value=1.9e-06 Score=84.08 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=129.8
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CC--eeEEecCCCcceeEEEEcCC-CCEEEEEeCCCcEEEEeccCCceeE---Ee
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GN--QVKEFPAHTAAVNDLSFDVD-GEYVGSCSDDGSVVINSLFTDEKMK---FD 131 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~--~~~~~~~h~~~V~~l~~s~~-g~~l~s~~~Dg~v~iwd~~~~~~~~---~~ 131 (807)
.|++.+..++++..+|.+.+-+.+ .. .++.+++|.-..+...|+.. -+.+.+||+||.+..||++...... ..
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 367778889999999999965543 22 24578999999998988753 4688999999999999999533222 23
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe----CCEEEEEeCCcEEEEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWANDAGVKVYD 206 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~----~~~la~~~d~~v~iwd 206 (807)
.|. .|.++.-+|. .+.++++|+.|-.+++||.+..+++...-. -.|.|+.+.++ +.+++++.-++.+|.+
T Consensus 208 vH~~GV~SI~ss~~----~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPP----KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eeecceEEEecCCC----CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 455 9999998887 378999999999999999986655443222 23789999998 3567777888888888
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEE-EEEEeeC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIK-IASIKTN 256 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~-vw~~~~~ 256 (807)
...+.....+..+. ...|......-.|. ....++++ .|+.++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s-~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPS-DKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeec-cccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 87553321111111 11122223333452 23456664 676644 6754433
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.54 E-value=1.3e-06 Score=98.85 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=133.6
Q ss_pred ecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcc-----eeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC
Q 003625 62 VAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAA-----VNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR 134 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~-----V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~ 134 (807)
.....+++++.+..+.+||..... ...+. +... ..-+-++++.-++++|+.-+.+.+|.... .....+.+|.
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHe 175 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHE 175 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccC
Confidence 356789999999999999996444 33332 3222 12234567778999999999999999874 3333578888
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcCCCce
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
.|.++.|+-+ |+++++.+.|.++++|...-......+..+|...|..++|.+..++++ .|.+.++|+... ..
T Consensus 176 G~iF~i~~s~d-----g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-~~ 249 (967)
T KOG0974|consen 176 GSIFSIVTSLD-----GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-TQ 249 (967)
T ss_pred CceEEEEEccC-----CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccc-ce
Confidence 9999999999 999999999999999987633333457789999999999996666665 799999997653 33
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCc
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSN 259 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~ 259 (807)
+..+..+... .+..+... +....+++ .|+.+++|++..+...
T Consensus 250 l~~y~~h~g~-----~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 250 LEVYDEHSGK-----GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred ehhhhhhhhc-----ceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 3344443211 13333333 34455555 8999999999877644
No 254
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=1.1e-06 Score=91.33 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=146.4
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEe-cCCCcceeEEEEcCC--CCEEEEEeCCCcEEEEeccC-Cce---eEE
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEF-PAHTAAVNDLSFDVD--GEYVGSCSDDGSVVINSLFT-DEK---MKF 130 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~-~~h~~~V~~l~~s~~--g~~l~s~~~Dg~v~iwd~~~-~~~---~~~ 130 (807)
.|...|..+++|+.|..|.+||. .+.....+ .+|...|..-.|-|. ...+++++.||.|++=.+.. +.+ ..+
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 35557999999999999999999 45544444 568888877778774 45799999999999987654 333 345
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccce-Eeec-CCc---CeEEEEEe---CCEEEEE-eCC
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ-VLHS-GEG---PVHVVKWR---TSLIAWA-NDA 200 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~-~~~~-~~~---~V~~l~~~---~~~la~~-~d~ 200 (807)
..|. +|.-++..|+ +...|.+++.|+.+.-+|.+-...... +... +.. ....++.+ ...++++ .|.
T Consensus 229 ~~h~g~vhklav~p~----sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPD----SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ccccCccceeeecCC----CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 5566 9999999998 467899999999998887663221111 1112 222 34455555 3345554 899
Q ss_pred cEEEEEcCCCce------EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCCCcCCCCccccCCcce
Q 003625 201 GVKVYDAANDQR------ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQ 272 (807)
Q Consensus 201 ~v~iwd~~~~~~------~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 272 (807)
-+++||.+.-.. +..+-.+.........+++++++ ++.-+.++ .|..|+++.-..+...... ..+.-..+
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~--~~s~~~~~ 382 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD--PSSPREQY 382 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC--CCcchhhc
Confidence 999999874321 22222221122334457888887 55555555 8888999843322211000 00000112
Q ss_pred EEE-EEEeeeceEEEeeeecC--CceEEEEe
Q 003625 273 VDI-VASFQTSYYISGIAPFG--DCLVVLAY 300 (807)
Q Consensus 273 v~~-~~~~~~~~~i~gi~~~~--~~l~vl~~ 300 (807)
+.. .+-......|.|+..|| ..++|-|.
T Consensus 383 ~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 383 VKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cchhhcccccccccceeeeccCccceEEecC
Confidence 222 23334456799999999 55665543
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.51 E-value=3.5e-07 Score=108.14 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=136.1
Q ss_pred eEEEEe--cCCEEEEEecCCeEEEEec-CCCeeEEec-CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEec
Q 003625 57 ASCVAV--AERMIALGTHAGTVHILDF-LGNQVKEFP-AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY 132 (807)
Q Consensus 57 i~~~s~--~~~~la~gs~dg~I~i~d~-~~~~~~~~~-~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~ 132 (807)
+.+++. ...+.++|+.||.|++|.. .+..+..++ +-.+.|+.+.|+.+|+.+..+..||.+.+|..........+.
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qc 2290 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQC 2290 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceecccc
Confidence 556554 4457789999999999998 455554443 233789999999999999999999999999998655566777
Q ss_pred CC-ceEEEEeCCCCCCcCCCEEEEe---cCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--CEEEEE-eCCcEEEE
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAG---GLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--SLIAWA-NDAGVKVY 205 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g---~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~~la~~-~d~~v~iw 205 (807)
|. ....+.|-.. .++++ +.++++.+||....+....+-..|.+.++++++.+ +++.+| .+|.|++|
T Consensus 2291 hnk~~~Df~Fi~s-------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2291 HNKALSDFRFIGS-------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred CCccccceeeeeh-------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 77 7777777533 34443 45678999998765555555578999999999994 556655 79999999
Q ss_pred EcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 206 DAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 206 d~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
|++..+.+.+++. |.....+++| ..|.++||++...+
T Consensus 2364 D~rqrql~h~~~~---------------~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA---------------LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ehHHHHHHHHhhh---------------hhhhheeeccCcccceEEEEccccc
Confidence 9998877665432 3456678888 89999999997654
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.51 E-value=5.1e-06 Score=88.81 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=115.9
Q ss_pred cCCEEEEEecCCeEEEEecCCCee-EEe--cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceE
Q 003625 63 AERMIALGTHAGTVHILDFLGNQV-KEF--PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMK 137 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~~-~~~--~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~ 137 (807)
+..+++.|+..|.|.+++..+..+ ..+ ..|.+.|+++.++.+-..|-|++.|+.+..|+...+.+. .+.... .+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 344789999999999999965554 333 459999999999999999999999999999999987655 466666 899
Q ss_pred EEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-------CCEEEEE--eCCcEEEEEcC
Q 003625 138 AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-------TSLIAWA--NDAGVKVYDAA 208 (807)
Q Consensus 138 ~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-------~~~la~~--~d~~v~iwd~~ 208 (807)
+++.+|+ +..+++++. +|.+|+.. .++....+.+|.++|.++.|. |.++.++ .+..+.+|-+.
T Consensus 149 sl~is~D-----~~~l~~as~--~ik~~~~~-~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 149 SLCISPD-----GKILLTASR--QIKVLDIE-TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred eEEEcCC-----CCEEEeccc--eEEEEEcc-CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 9999999 899999886 99999986 678889999999999999997 4555554 57788888876
Q ss_pred C
Q 003625 209 N 209 (807)
Q Consensus 209 ~ 209 (807)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.48 E-value=1.3e-06 Score=88.98 Aligned_cols=155 Identities=13% Similarity=0.113 Sum_probs=104.5
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCCe--eE--EecCCCcceeEEEEcCCCCEEE---EEeCCCcEEEEeccCCceeEEe
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGNQ--VK--EFPAHTAAVNDLSFDVDGEYVG---SCSDDGSVVINSLFTDEKMKFD 131 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~~--~~--~~~~h~~~V~~l~~s~~g~~l~---s~~~Dg~v~iwd~~~~~~~~~~ 131 (807)
..+++++.+|++..+....+++..++. .+ ....-...-+++.|..+...+. .+++...+.+|....+.+...-
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 355688899999999888888874333 11 1111112223344444444443 3445556667776666666677
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEEEcC
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iwd~~ 208 (807)
+|- -+..|+|+|+ ++.+++++.|+.|++-...-.........||+.-|..++.. ++.+.++ +|+++++||+.
T Consensus 149 GhvSml~dVavS~D-----~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPD-----DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hhhhhhheeeecCC-----CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence 777 8999999999 89999999999998753211112223345799999999988 5554555 89999999999
Q ss_pred CCceEEeeeC
Q 003625 209 NDQRITFIER 218 (807)
Q Consensus 209 ~~~~~~~i~~ 218 (807)
+++.+.++..
T Consensus 224 sgk~L~t~dl 233 (390)
T KOG3914|consen 224 SGKLLDTCDL 233 (390)
T ss_pred cCCcccccch
Confidence 9998866544
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=2.4e-05 Score=87.26 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=93.6
Q ss_pred EEEEecCCEEEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEE-EeCCCc--EEEEeccCCceeEEe
Q 003625 58 SCVAVAERMIALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGS--VVINSLFTDEKMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~--v~iwd~~~~~~~~~~ 131 (807)
..|+|+|+.|+..+.+ ..|++||+.+.....+....+.....+|+|||+.|+. .+.+|. |+++|+.++....+.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence 3699999988876543 3688889865544444333334457899999998875 455665 777788888777665
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-e-CCc--EE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-N-DAG--VK 203 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~-d~~--v~ 203 (807)
.+. .....+|+|+ ++.++..+ .+|...+|.....+.....+...........|+ |+.++.. . ++. |.
T Consensus 303 ~~~~~~~~p~wSpD-----G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 303 RHRAIDTEPSWHPD-----GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred cCCCCccceEECCC-----CCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEE
Confidence 555 6677899999 67665544 455555554433333333332222223456787 6676655 3 343 45
Q ss_pred EEEcCCCce
Q 003625 204 VYDAANDQR 212 (807)
Q Consensus 204 iwd~~~~~~ 212 (807)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 567777654
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=1.8e-05 Score=87.45 Aligned_cols=187 Identities=17% Similarity=0.118 Sum_probs=112.4
Q ss_pred EEEecCCEEE---EEecC--CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC-CC----cEEEEeccC---C
Q 003625 59 CVAVAERMIA---LGTHA--GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DG----SVVINSLFT---D 125 (807)
Q Consensus 59 ~~s~~~~~la---~gs~d--g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg----~v~iwd~~~---~ 125 (807)
.|+|+|+.++ +...+ ..|++.++.+.....+....+.....+|||||+.|+..+. +| .+..|++.+ +
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g 270 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG 270 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence 6999987522 33333 3677888876655555445555566899999999887653 23 234467664 2
Q ss_pred ceeEEec-CC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccC--CccceEeecCCcCeEEEEEe--CCEEEEE-
Q 003625 126 EKMKFDY-HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWL--GYRDQVLHSGEGPVHVVKWR--TSLIAWA- 197 (807)
Q Consensus 126 ~~~~~~~-~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~--~~~~~~~~~~~~~V~~l~~~--~~~la~~- 197 (807)
....+.. .. .....+|+|+ |+.++..+ .+|...+|..... +.....+..+.+.+....|+ |+.++..
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPD-----G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPD-----GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cceEeecCCCCCcCCeEECCC-----CCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 3333332 22 4467899999 77666554 5676666654322 23344444455667788999 7777655
Q ss_pred e-C--CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eC--CcEEEEEEeeCC
Q 003625 198 N-D--AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WG--TYIKIASIKTNQ 257 (807)
Q Consensus 198 ~-d--~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d--~~i~vw~~~~~~ 257 (807)
. + ..|.+||+.+++........ .......|+ ++..++.. .+ ..|++|++..+.
T Consensus 346 ~~~g~~~I~v~dl~~g~~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 346 VIKGVRQICVYDLATGRDYQLTTSP-------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred cCCCCcEEEEEECCCCCeEEccCCC-------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2 2 35899999888764432111 123457786 66666643 22 346666665443
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=6.4e-05 Score=83.87 Aligned_cols=168 Identities=10% Similarity=0.077 Sum_probs=105.1
Q ss_pred eEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC-C--cEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCC
Q 003625 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD-G--SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (807)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D-g--~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (807)
.+.++|.+|...+.+..+...+.+..|+|||++|+.++.+ + .|++||+.+++...+.... ...+.+|+|+ +
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD-----G 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD-----G 273 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC-----C
Confidence 6777888887666676777789999999999999876543 3 5888899887765544333 4557899999 7
Q ss_pred CEEE-EecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CC--cEEEEEcCCCceEEeeeCCCCCC
Q 003625 151 RRFV-AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPRGSP 223 (807)
Q Consensus 151 ~~l~-~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~--~v~iwd~~~~~~~~~i~~~~~~~ 223 (807)
+.++ +.+.+|...+|.....+.....+..+........|+ |+.++.++ ++ .|.++|+.+++.... ....
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g--- 349 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEG--- 349 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCC---
Confidence 7665 456677644443332344444455555566778898 66666553 33 366667776664432 1111
Q ss_pred CCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEe
Q 003625 224 RPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (807)
Q Consensus 224 ~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (807)
.......|+ ++..++.. .++...+|-+.
T Consensus 350 ---~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 350 ---EQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred ---CCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 112234675 66666655 34545555443
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=0.0055 Score=67.27 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=71.3
Q ss_pred EEEecCCEEEEEecCCeEEEEecCCC-----e-----------eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEec
Q 003625 59 CVAVAERMIALGTHAGTVHILDFLGN-----Q-----------VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSL 122 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~~~-----~-----------~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~ 122 (807)
.|.....+||+|+.||.+++..+.+. . -+++.+|+++|.-+.|+.+.+.+-|...+|.|.+|-+
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 36667889999999999999876311 1 2467899999999999999999999999999999998
Q ss_pred cCCcee---EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeE
Q 003625 123 FTDEKM---KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHL 162 (807)
Q Consensus 123 ~~~~~~---~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v 162 (807)
.++.-. .-+..+ .|.+++|+.+ |..++..-.||.|
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~d-----G~kIcIvYeDGav 139 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLD-----GTKICIVYEDGAV 139 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCC-----CcEEEEEEccCCE
Confidence 875422 111222 5666666666 5555544444443
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=2.5e-05 Score=87.25 Aligned_cols=169 Identities=10% Similarity=0.101 Sum_probs=109.2
Q ss_pred eEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCC
Q 003625 75 TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMS 150 (807)
Q Consensus 75 ~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~ 150 (807)
.|.++|.+|...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.++....+.... .+.+.+|+|+ |
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD-----G 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD-----G 254 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC-----C
Confidence 4888888887767777778889999999999999877644 36889999988776654433 5667899999 7
Q ss_pred CEEE-EecCCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CC--cEEEEEcCCCceEEeeeCCCC
Q 003625 151 RRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DA--GVKVYDAANDQRITFIERPRG 221 (807)
Q Consensus 151 ~~l~-~g~~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~--~v~iwd~~~~~~~~~i~~~~~ 221 (807)
+.++ +.+.+|. |.+++.. +.....+..+.+......|+ |+.++.++ ++ .|.++++.+++..... ...
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLA--SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECC--CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC-
Confidence 7665 4555554 5555553 33444455555566677888 56665543 33 4777787777644321 111
Q ss_pred CCCCCCCCCeeeee-CCCEEEEE--eCC--cEEEEEEeeCC
Q 003625 222 SPRPELLLPHLVWQ-DDTLLVIG--WGT--YIKIASIKTNQ 257 (807)
Q Consensus 222 ~~~~~~~~~~l~~~-~~~~l~~g--~d~--~i~vw~~~~~~ 257 (807)
.......|+ ++..++.. .++ .|.+|++.++.
T Consensus 331 -----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 331 -----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred -----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 112345675 66666655 233 36677776543
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=2.9e-05 Score=83.19 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=131.8
Q ss_pred ecCCEEEEEecCCeEEEEecC-CCeeEEecC---CCcceeEEEEc------C--------------CCCEEEEEeCCCcE
Q 003625 62 VAERMIALGTHAGTVHILDFL-GNQVKEFPA---HTAAVNDLSFD------V--------------DGEYVGSCSDDGSV 117 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~---h~~~V~~l~~s------~--------------~g~~l~s~~~Dg~v 117 (807)
|...++|..+.||.+++|+.. ++..+.+.. -++..++..|. | +-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345689999999999999984 433334432 23344444443 2 33457778889999
Q ss_pred EEEeccCCceeE-Ee--cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeCC-
Q 003625 118 VINSLFTDEKMK-FD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRTS- 192 (807)
Q Consensus 118 ~iwd~~~~~~~~-~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~~- 192 (807)
.++++..+++.. +. .|- +|.++.++.+ ...|.+++.|+.+..|+.. .....+...+.+..+.+++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-----~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-----LGCIYSVGADLKVVYILEK-EKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccc-----cCceEecCCceeEEEEecc-cceeeeeeccCCCccceEEEcCCC
Confidence 999999988764 43 333 9999999888 6899999999999999765 45666677777788888988843
Q ss_pred -EEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee------CCCEEEEE--eCCcEEEEEEeeC
Q 003625 193 -LIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ------DDTLLVIG--WGTYIKIASIKTN 256 (807)
Q Consensus 193 -~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~------~~~~l~~g--~d~~i~vw~~~~~ 256 (807)
.++++ .+.|++||+.+++.+.++.+|.+ .+.++.|. .|.++.++ .+..+.+|-+...
T Consensus 157 ~~l~~a-s~~ik~~~~~~kevv~~ftgh~s------~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 KILLTA-SRQIKVLDIETKEVVITFTGHGS------PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CEEEec-cceEEEEEccCceEEEEecCCCc------ceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 55443 57899999999999999777654 35666664 24566665 5566888887753
No 264
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.34 E-value=1e-06 Score=60.97 Aligned_cols=38 Identities=26% Similarity=0.621 Sum_probs=35.7
Q ss_pred CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 003625 84 NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (807)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (807)
+.+.++.+|.++|++++|+|++.+|+||+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999999997
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.33 E-value=5e-06 Score=82.90 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=75.6
Q ss_pred EEEEecCCeEEEEec---CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC--ceeEEecCC-ceEEEE
Q 003625 67 IALGTHAGTVHILDF---LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD--EKMKFDYHR-PMKAIS 140 (807)
Q Consensus 67 la~gs~dg~I~i~d~---~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~--~~~~~~~~~-~v~~v~ 140 (807)
..+|...|.|.+..+ .-..+.++.+|.+.+++++|.+....+.+|..|..+.+||+..+ ....+.+|. .|..+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 334555565555544 22346788999999999999999999999999999999999763 444567777 888887
Q ss_pred eCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 141 LDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
..+. .+.+.+++.||.|.+|+
T Consensus 248 ~~~~-----t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 248 YAQH-----TRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhh-----heeeeeccCCCeEEEEe
Confidence 7776 68899999999999996
No 266
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=2.1e-06 Score=89.23 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=122.3
Q ss_pred EEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EE-ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE
Q 003625 87 KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF-DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (807)
..+..|.+.|+.+.|+..|..++|||.|..|.+||..++... .+ .+|. .|..-.|-|.- +.+.+++++.||+|+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcCceeccccCcee
Confidence 456789999999999999999999999999999999885544 34 5565 78777888862 357899999999999
Q ss_pred EEEcccCC--ccceEeecCCcCeEEEEEe---C-CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee--e
Q 003625 164 LNSKKWLG--YRDQVLHSGEGPVHVVKWR---T-SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW--Q 235 (807)
Q Consensus 164 l~~~~~~~--~~~~~~~~~~~~V~~l~~~---~-~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~--~ 235 (807)
+-.....+ .....+..|.++|..++.. + .++.++.|+.+.-+|++.+.....+...............++. .
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87665444 3345667799999999887 2 5666678999999999877654433211111110011122222 2
Q ss_pred CCCEEEEE-eCCcEEEEEEeeCCCcCC
Q 003625 236 DDTLLVIG-WGTYIKIASIKTNQSNVA 261 (807)
Q Consensus 236 ~~~~l~~g-~d~~i~vw~~~~~~~~~~ 261 (807)
+...+++| .|..+++||.+.-.....
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccc
Confidence 44567777 889999999887554433
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.31 E-value=4.9e-05 Score=73.46 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=121.7
Q ss_pred EEEEecCCeEEEEecCCCeeEEecCCCc--ceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-c-eeE-EecC-C-ceEEE
Q 003625 67 IALGTHAGTVHILDFLGNQVKEFPAHTA--AVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-E-KMK-FDYH-R-PMKAI 139 (807)
Q Consensus 67 la~gs~dg~I~i~d~~~~~~~~~~~h~~--~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~-~~~-~~~~-~-~v~~v 139 (807)
+..++.|.+++++++++...+. ..|.. .+.+++++++++++++.++...|..|.++.. + +.. .... . .-.+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~-~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF-AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred eeeccCCcceeEEEEecCcccc-eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 4566777788888776554322 22332 4889999999999999999999999998762 2 222 2222 2 56778
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCcc----ceEeecCCcCeEEEEEe--C--CEEEEE-eCCcEEEEEcCCC
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYR----DQVLHSGEGPVHVVKWR--T--SLIAWA-NDAGVKVYDAAND 210 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~----~~~~~~~~~~V~~l~~~--~--~~la~~-~d~~v~iwd~~~~ 210 (807)
.|+.. ...||+++.||++.+||.+.++.. ...-..|.|.+..+.|+ | .++..+ .-+.+.+.|++++
T Consensus 210 S~s~~-----~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 210 SFSEN-----DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred eeccC-----cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 88887 789999999999999999876633 23334589999999999 3 566666 5778999999998
Q ss_pred ceEEeeeCCCCCC-C-CCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 211 QRITFIERPRGSP-R-PELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 211 ~~~~~i~~~~~~~-~-~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.....+..+.... . ....+..-.|+ ++.-..+.....+.-|++.++.
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srs 334 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRS 334 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccchhhheeeccccc
Confidence 7666554443211 1 11112222332 3333444444445556655443
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.31 E-value=9.9e-06 Score=80.76 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=129.2
Q ss_pred EEEec--CCEEEEEecCCeEEEEecCCC---e---------------------------------eEEe-cCCCcceeEE
Q 003625 59 CVAVA--ERMIALGTHAGTVHILDFLGN---Q---------------------------------VKEF-PAHTAAVNDL 99 (807)
Q Consensus 59 ~~s~~--~~~la~gs~dg~I~i~d~~~~---~---------------------------------~~~~-~~h~~~V~~l 99 (807)
.|... +..+...+.|.+|++|.+..+ . .+.+ .+|+-.|+++
T Consensus 91 rw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 91 RWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSI 170 (433)
T ss_pred eecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeee
Confidence 35443 446778899999999976211 0 0111 3588889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeccC-Ccee---EEecCC------ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 100 SFDVDGEYVGSCSDDGSVVINSLFT-DEKM---KFDYHR------PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 100 ~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~---~~~~~~------~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
+++.|+..++|+ +|-.|.+|++.- .... -++.+. -|++..|||. ..+.|+-++..|+|++.|.+-
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~----~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH----HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh----HccEEEEecCCCcEEEeechh
Confidence 999999999886 577899999875 2221 222222 6889999998 468999999999999998762
Q ss_pred CC---ccceEeecC------------CcCeEEEEEe--CCEEEEEeCCcEEEEEcC-CCceEEeeeCCCCCC--------
Q 003625 170 LG---YRDQVLHSG------------EGPVHVVKWR--TSLIAWANDAGVKVYDAA-NDQRITFIERPRGSP-------- 223 (807)
Q Consensus 170 ~~---~~~~~~~~~------------~~~V~~l~~~--~~~la~~~d~~v~iwd~~-~~~~~~~i~~~~~~~-------- 223 (807)
.. ...+.+... -..|..+.|+ |+++.+-.--+|++||+. ..+++.+++.+....
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhh
Confidence 21 111222211 1457888998 899988888899999995 455555555543110
Q ss_pred -CCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 224 -RPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 224 -~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
....-...++|+ ++..+++| ..+.+++++...+.
T Consensus 326 nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 000112245676 55677788 78889999865554
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.31 E-value=2.1e-05 Score=78.48 Aligned_cols=197 Identities=12% Similarity=0.184 Sum_probs=124.9
Q ss_pred CceEE--EEecCCEEEEEecCCeEEEEecCCC------eeEEecCCC------------cceeEEEEcCCCC--EEEEEe
Q 003625 55 DAASC--VAVAERMIALGTHAGTVHILDFLGN------QVKEFPAHT------------AAVNDLSFDVDGE--YVGSCS 112 (807)
Q Consensus 55 ~~i~~--~s~~~~~la~gs~dg~I~i~d~~~~------~~~~~~~h~------------~~V~~l~~s~~g~--~l~s~~ 112 (807)
+-++| |...|++||+|..+|.|.+|..+.. ....++.|. ..|+.+.|.++++ .++..+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 44566 5557999999999999999976311 123444443 4788899988765 567778
Q ss_pred CCCcEEEEeccCCc-----------------------------------eeE--EecCC-ceEEEEeCCCCCCcCCCEEE
Q 003625 113 DDGSVVINSLFTDE-----------------------------------KMK--FDYHR-PMKAISLDPDYTRKMSRRFV 154 (807)
Q Consensus 113 ~Dg~v~iwd~~~~~-----------------------------------~~~--~~~~~-~v~~v~~~p~~~~~~~~~l~ 154 (807)
.|.++++|-+.... +.+ -..|. -|+++.++.+ ...++
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD-----~Et~l 180 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD-----KETFL 180 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc-----cceEe
Confidence 89999999875311 011 13455 7788888888 56666
Q ss_pred EecCCCeEEEEEcccCCccceEee--cC-----CcCeEEEEEeC---CEEE-EEeCCcEEEEEcCCCce----EEeeeCC
Q 003625 155 AGGLAGHLYLNSKKWLGYRDQVLH--SG-----EGPVHVVKWRT---SLIA-WANDAGVKVYDAANDQR----ITFIERP 219 (807)
Q Consensus 155 ~g~~dg~v~l~~~~~~~~~~~~~~--~~-----~~~V~~l~~~~---~~la-~~~d~~v~iwd~~~~~~----~~~i~~~ 219 (807)
++. |=.|.+|......+...++. .+ ...|++..|++ .+++ +++.|+|++.|++.... ...+..+
T Consensus 181 SAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 654 56799997654443333322 22 24588888983 4444 45899999999984321 1122223
Q ss_pred CCCCC------CCCCCCeeeee-CCCEEEEEeCCcEEEEEEeeCC
Q 003625 220 RGSPR------PELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 220 ~~~~~------~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
..+.. ....+..+.|+ +|+++++-.--+|++||+....
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~ 304 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA 304 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence 22111 12235567776 4566665566899999997654
No 270
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.29 E-value=3e-05 Score=77.49 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=119.8
Q ss_pred cccCCCceeeeecCCCC-ccc--cCCCceEEE--EecCCEEEEEecCCeEEEEecC-----CCeeEEecCCCcceeEEEE
Q 003625 32 EEEEEPRLKYQRMGGSL-PSL--LANDAASCV--AVAERMIALGTHAGTVHILDFL-----GNQVKEFPAHTAAVNDLSF 101 (807)
Q Consensus 32 ~~~~~~~l~~~~~~~~~-~~~--~~~~~i~~~--s~~~~~la~gs~dg~I~i~d~~-----~~~~~~~~~h~~~V~~l~~ 101 (807)
.+|...+++..+-.++- +.+ +...++++. .+....|++|-..|++.-+.+. ....+.+..|...|..+-|
T Consensus 43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if 122 (404)
T KOG1409|consen 43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVF 122 (404)
T ss_pred cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEe
Confidence 33444555555544332 111 223334454 4456689999999999988773 2225667789999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeccC------------------------------------------CceeEEecCC-ceEE
Q 003625 102 DVDGEYVGSCSDDGSVVINSLFT------------------------------------------DEKMKFDYHR-PMKA 138 (807)
Q Consensus 102 s~~g~~l~s~~~Dg~v~iwd~~~------------------------------------------~~~~~~~~~~-~v~~ 138 (807)
+-..+++++++.|..+.---.+. +.+.++.+|. ++.+
T Consensus 123 ~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~ 202 (404)
T KOG1409|consen 123 SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTC 202 (404)
T ss_pred cCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEE
Confidence 98888888888775432111110 1133556777 9999
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEEeCCcEEEEEcCCC
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAAND 210 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~~ 210 (807)
.+|.|. .+.+.+|..|..+.+|+..-.......+.+|...|..+..- -++++++.||.|-+|+....
T Consensus 203 l~Wd~~-----~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 203 LKWDPG-----QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEcCC-----CcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999998 78999999999999999864445556677888888887665 35566668999999998643
No 271
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.27 E-value=9.2e-05 Score=79.84 Aligned_cols=181 Identities=17% Similarity=0.239 Sum_probs=113.5
Q ss_pred CCEE-EEEecCCeEEEEecCC-CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceEEEE
Q 003625 64 ERMI-ALGTHAGTVHILDFLG-NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAIS 140 (807)
Q Consensus 64 ~~~l-a~gs~dg~I~i~d~~~-~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~ 140 (807)
++++ ++-..+|.|.+.|... +.+..+.........+.++|||+++.+++.||.|.++|+.++++. ++.......+++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 3444 4556789999999954 456777655444455789999999999999999999999997765 577766778899
Q ss_pred eCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeec-------CCcCeEEEEEe---CCEEEEEe-CCcEEEEEcC
Q 003625 141 LDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHS-------GEGPVHVVKWR---TSLIAWAN-DAGVKVYDAA 208 (807)
Q Consensus 141 ~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~-------~~~~V~~l~~~---~~~la~~~-d~~v~iwd~~ 208 (807)
++|+ |+++++++ ..+.+.++|.. +.+..+.+.. ....+.++..+ +.+++... .+.|-+.|..
T Consensus 85 ~s~D-----G~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 85 VSPD-----GKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp E--T-----TTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred EcCC-----CCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 9999 88777664 67899999865 3344444432 23456777666 34666654 4667777766
Q ss_pred CCceE--EeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 209 NDQRI--TFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~--~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
....+ ..+.... +.....|+ ++++++++ ..+.|-++|.+++.
T Consensus 159 d~~~~~~~~i~~g~-------~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 159 DPKNLKVTTIKVGR-------FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp TSSCEEEEEEE--T-------TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cccccceeeecccc-------cccccccCcccceeeecccccceeEEEeeccce
Confidence 54433 2332221 23345665 56776665 66778888866543
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=6.1e-06 Score=82.34 Aligned_cols=164 Identities=11% Similarity=0.145 Sum_probs=114.2
Q ss_pred cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-----cee-EEecCCce
Q 003625 63 AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-----EKM-KFDYHRPM 136 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-----~~~-~~~~~~~v 136 (807)
.|-.+++|.. -.|-+-|+.+...+.+. .++.|.++.|...++.+..|..+|.|...|++.+ -+. .+-....|
T Consensus 224 ~gyhfs~G~s-qqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 224 MGYHFSVGLS-QQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ceeeeccccc-ceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 3445445544 45667787666566665 6667989999999999999999999999999863 233 34444488
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc--cceEeecCCcCeEEEEEe-----CCEEEEEeCCcEEEEEcCC
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVLHSGEGPVHVVKWR-----TSLIAWANDAGVKVYDAAN 209 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~~~~~~~~V~~l~~~-----~~~la~~~d~~v~iwd~~~ 209 (807)
+++..-.. +++.+.+.+.+|+|++||.+.... .+....+|-..-.-+-+. |-+++++.|.-.|||.++.
T Consensus 302 tslq~Lq~----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 302 TSLQILQF----SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhcc----ccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 88876552 268899999999999999986543 255566665443333333 4556666899999999999
Q ss_pred CceEEeeeCCCCCCCCCCCCCeeee
Q 003625 210 DQRITFIERPRGSPRPELLLPHLVW 234 (807)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~~~l~~ 234 (807)
+..+.+++.+... .+..++++++
T Consensus 378 ghLl~tipf~~s~--~e~d~~sv~~ 400 (425)
T KOG2695|consen 378 GHLLCTIPFPYSA--SEVDIPSVAF 400 (425)
T ss_pred CceeeccCCCCcc--ccccccceeh
Confidence 9999988776422 2223445554
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.19 E-value=4.5e-06 Score=99.16 Aligned_cols=166 Identities=10% Similarity=0.172 Sum_probs=120.3
Q ss_pred CCCceeeeecCCCCccccCCCc--eE--EEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEE
Q 003625 35 EEPRLKYQRMGGSLPSLLANDA--AS--CVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS 110 (807)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~--i~--~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s 110 (807)
.-.++++|+++..+...-..+. ++ .|+..|+.+.++..||.+.+|....++....+.|....+++.|-. ..+++
T Consensus 2230 gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~t 2307 (2439)
T KOG1064|consen 2230 GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLAT 2307 (2439)
T ss_pred ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhc
Confidence 3445666666666554433222 22 366789999999999999999998888888999999999988874 66777
Q ss_pred Ee---CCCcEEEEeccCC--ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCe
Q 003625 111 CS---DDGSVVINSLFTD--EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (807)
Q Consensus 111 ~~---~Dg~v~iwd~~~~--~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V 184 (807)
++ .++.+.+||.... .-.....|. .++++++.|. .+.|++||.+|.|++||.+ ..+....+..
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-----~qllisggr~G~v~l~D~r-qrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-----HQLLISGGRKGEVCLFDIR-QRQLRHTFQA----- 2376 (2439)
T ss_pred cccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-----ceEEEecCCcCcEEEeehH-HHHHHHHhhh-----
Confidence 65 4678999997652 222336666 9999999999 8999999999999999976 2222222221
Q ss_pred EEEEEe-CCEEEEE-eCCcEEEEEcCCCceEEeee
Q 003625 185 HVVKWR-TSLIAWA-NDAGVKVYDAANDQRITFIE 217 (807)
Q Consensus 185 ~~l~~~-~~~la~~-~d~~v~iwd~~~~~~~~~i~ 217 (807)
++ ..+++++ +.|.++||++.....+.+++
T Consensus 2377 ----~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 ----LDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ----hhhhheeeccCcccceEEEEccccchhhcCc
Confidence 22 3455555 79999999999876666543
No 274
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.18 E-value=2.8e-05 Score=86.92 Aligned_cols=146 Identities=16% Similarity=0.266 Sum_probs=109.4
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeC---------CCcEEEEeccC-C
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD---------DGSVVINSLFT-D 125 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~---------Dg~v~iwd~~~-~ 125 (807)
++-+..+++.+.+|...|+|.+-|.+ .+.++++.+|++.|.+ |+-.|+.|+|||. |.-|+|||++. .
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 45566788999999999999999995 5668999999999974 5566999999985 44589999998 3
Q ss_pred ceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc-cCCccceEee--cCCcCeEEEEEe--CCEEEEE-eC
Q 003625 126 EKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-WLGYRDQVLH--SGEGPVHVVKWR--TSLIAWA-ND 199 (807)
Q Consensus 126 ~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~~~~~~~~~~--~~~~~V~~l~~~--~~~la~~-~d 199 (807)
.+..+..+....-+.|+|.+ ...+++.+..|...+.+.. |......+.. .....+.+..++ |+.++.+ .+
T Consensus 258 al~PI~~~~~P~flrf~Psl----~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 258 ALSPIQFPYGPQFLRFHPSL----TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred ccCCcccccCchhhhhcccc----cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 34445555544668899986 5678888889998887632 2222233333 233447888887 8999999 79
Q ss_pred CcEEEEEcC
Q 003625 200 AGVKVYDAA 208 (807)
Q Consensus 200 ~~v~iwd~~ 208 (807)
|.|.+|--+
T Consensus 334 g~v~~wa~~ 342 (1118)
T KOG1275|consen 334 GHVNLWADR 342 (1118)
T ss_pred CcEeeecCC
Confidence 999999843
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.16 E-value=3.3e-05 Score=75.68 Aligned_cols=181 Identities=11% Similarity=-0.007 Sum_probs=117.5
Q ss_pred EEEEEecCCeEEEEecCCCe-eEEecCC---Cc---ceeEEEEcCCCCEEEEEeCCCcEEEEeccCC---ceeEEecCC-
Q 003625 66 MIALGTHAGTVHILDFLGNQ-VKEFPAH---TA---AVNDLSFDVDGEYVGSCSDDGSVVINSLFTD---EKMKFDYHR- 134 (807)
Q Consensus 66 ~la~gs~dg~I~i~d~~~~~-~~~~~~h---~~---~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~---~~~~~~~~~- 134 (807)
.++.+-.+|.|.++..+... ...+.+- .- -..++.|++.|..++++..+|.+.+-+.... ++..++.|.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 45556677888888765432 1222221 11 1346789999999999999999985554443 334578888
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceE-eecCCcCeEEEEEe---CCEEEEE-eCCcEEEEEcC-
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR---TSLIAWA-NDAGVKVYDAA- 208 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-~~~~~~~V~~l~~~---~~~la~~-~d~~v~iwd~~- 208 (807)
+.+..+|+.. ..+.+.+||.||.+..||.+..+..... ...|...|.+|.-+ |.++++| .|..|++||.+
T Consensus 167 E~Wta~f~~~----~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 167 EAWTAKFSDK----EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeeeecccC----CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 8888888765 4679999999999999999843322211 34477889999888 5688888 69999999998
Q ss_pred CCceEEeeeCCCCCCCCCCCCCeeeeeC---CCEEEEEeCCcEEEEEEeeCC
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQD---DTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~~---~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.++++..-... .-+..+.|.+ +.+++++--+-.+|.+...+.
T Consensus 243 m~kPl~~~~v~-------GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 243 MGKPLFKAKVG-------GGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred ccCccccCccc-------cceEEEEecchhhhHHHHHHHhcCceEEEecccc
Confidence 45555432111 1244555542 233555544445666665443
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.12 E-value=2.3e-05 Score=75.46 Aligned_cols=147 Identities=13% Similarity=0.191 Sum_probs=99.8
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCCCe--eEEecC-CCcceeEEEEcCCCCEEEEEeC-----CCcEEEEeccCCceeE
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLGNQ--VKEFPA-HTAAVNDLSFDVDGEYVGSCSD-----DGSVVINSLFTDEKMK 129 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~~~--~~~~~~-h~~~V~~l~~s~~g~~l~s~~~-----Dg~v~iwd~~~~~~~~ 129 (807)
+.++.-++-+++|..||.+.+++.+... .+.+.. |.+ -.+.+....++.+.+++. -+..++|+++..+...
T Consensus 95 ~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 95 DACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred ccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 3455567889999999999999874311 122222 222 122333445666655432 2455667665433221
Q ss_pred --EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---C-CEEEEEeCCcEE
Q 003625 130 --FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---T-SLIAWANDAGVK 203 (807)
Q Consensus 130 --~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~-~~la~~~d~~v~ 203 (807)
......|.+++-+|. ..+.+++|+.||.+.+|+.+........+..|+.+++.+.|+ | ++++++.||.+-
T Consensus 174 ~~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 122226999999998 467899999999999999875556677788899999999999 3 566667899999
Q ss_pred EEEcCC
Q 003625 204 VYDAAN 209 (807)
Q Consensus 204 iwd~~~ 209 (807)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999774
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.11 E-value=0.00068 Score=83.02 Aligned_cols=193 Identities=13% Similarity=0.153 Sum_probs=120.2
Q ss_pred EEEEecCCEEEEE-ecCCeEEEEecCCCeeEEecCC-----------------CcceeEEEEcC-CCCEEEEEeCCCcEE
Q 003625 58 SCVAVAERMIALG-THAGTVHILDFLGNQVKEFPAH-----------------TAAVNDLSFDV-DGEYVGSCSDDGSVV 118 (807)
Q Consensus 58 ~~~s~~~~~la~g-s~dg~I~i~d~~~~~~~~~~~h-----------------~~~V~~l~~s~-~g~~l~s~~~Dg~v~ 118 (807)
.++.++++.|.++ +.++.|+++|..+..+.++.+- -..-+.++++| +|..+++.+.++.|+
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 4566667755554 4467899999876666555321 01235789999 566677778889999
Q ss_pred EEeccCCceeEEecC----------------CceEEEEeCCCCCCcCCC-EEEEecCCCeEEEEEcccCCccceEeec--
Q 003625 119 INSLFTDEKMKFDYH----------------RPMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHS-- 179 (807)
Q Consensus 119 iwd~~~~~~~~~~~~----------------~~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~~~~-- 179 (807)
+||..++.+..+.+. .....++++|+ ++ .+++-+.++.|++|+..- +.. ..+.+
T Consensus 709 v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd-----G~~LYVADs~n~~Irv~D~~t-g~~-~~~~gg~ 781 (1057)
T PLN02919 709 EYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD-----LKELYIADSESSSIRALDLKT-GGS-RLLAGGD 781 (1057)
T ss_pred EEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCC-----CCEEEEEECCCCeEEEEECCC-CcE-EEEEecc
Confidence 999987765543221 13567999998 55 667777788999998641 111 11110
Q ss_pred ------------CCc--------CeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCC-------CCCCCCCC
Q 003625 180 ------------GEG--------PVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRG-------SPRPELLL 229 (807)
Q Consensus 180 ------------~~~--------~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~-------~~~~~~~~ 229 (807)
..+ .-.+++++ |.++++. .++.|++||..++........... ....-..+
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 011 12477777 5665555 688999999988766544322110 00111234
Q ss_pred Ceeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 230 PHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 230 ~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
..++++ ++.++++. .+++|++|++.++.
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 556775 56655555 78899999998765
No 278
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=98.10 E-value=1.3e-05 Score=73.14 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=56.9
Q ss_pred ccCCCCCEEEEECCCcEEEEEeCChhh-HHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCc
Q 003625 372 WAAGDEPLYYIVSPKDVVIAKPRDAED-HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVE 440 (807)
Q Consensus 372 ~~~~~~~~~~v~s~~~i~~~~~~~~~d-~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~ 440 (807)
.++...++||++|.+.|+.+...+++. .|+.++++|+|++|+++|+.. ...++.|..++++++|+|
T Consensus 81 ~~D~~~~t~W~ys~~~I~ei~i~~E~r~vWk~yl~~~~fd~Al~~~~~~---~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 81 CRDPSSNTFWLYSSNSIFEIVINNEDRDVWKIYLDKGDFDEALQYCKTN---PAQRDQVLIKQADHLFQK 147 (147)
T ss_pred EEcCCCCeEEEEeCCeeEEEEcCcchHHHHHHHHhcCcHHHHHHHccCC---HHHHHHHHHHHHHHHhhC
Confidence 344567899999999999999999995 559999999999999999875 446788999999999975
No 279
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=98.04 E-value=1.3e-05 Score=69.22 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCc
Q 003625 492 AYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKP 571 (807)
Q Consensus 492 ~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~ 571 (807)
|.|++|.+|+.. ++..+..+++. ++.++++.+...++++. .+.+|+.||..+|+|++||+.|.++.+.
T Consensus 1 VDTaLlk~Yl~~--~~~~l~~llr~--~N~C~~~~~e~~L~~~~--------~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 1 VDTALLKCYLET--NPSLLGPLLRL--PNYCDLEEVEEVLKEHG--------KYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CcHHHHHHHHHh--CHHHHHHHHcc--CCcCCHHHHHHHHHHcC--------CHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 357899999876 55677777776 48899899988888877 9999999999999999999999998771
Q ss_pred --------------c-hhhHhhhcc--chHHHHHHHHHHH
Q 003625 572 --------------Y-IFDFIENHN--LHDAIREKVVQLM 594 (807)
Q Consensus 572 --------------~-~~~~i~~~~--~~~~~~~~~~~l~ 594 (807)
. +++|+++.+ ..+.|.+++.|++
T Consensus 69 ~~~~~~~~~~~~~~~~iv~yL~~L~~~~~dLI~~~s~WvL 108 (108)
T PF10366_consen 69 EDSDEEDPFLSGVKETIVQYLQKLGNEDLDLIFEYSDWVL 108 (108)
T ss_pred cccccccccccCchhHHHHHHHhCChhhhHHHHHhccccC
Confidence 1 378888774 6777888887763
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=8.7e-06 Score=85.50 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=103.7
Q ss_pred cCCEEEEEecCCeEEEEecC--CC------eeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-E-ec
Q 003625 63 AERMIALGTHAGTVHILDFL--GN------QVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-F-DY 132 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~--~~------~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~-~~ 132 (807)
+.+-+++++.|.+|++|.+. |. +..+++.|+.+|+++.|-.+-++++++ ||.+.+||..-+.... + ..
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 45677799999999999983 22 245778899999999999998888776 7899999987765432 1 21
Q ss_pred --CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc--cceEe--ecCCcCeEEEEEe--CCEEEEE-eCCcEE
Q 003625 133 --HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY--RDQVL--HSGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (807)
Q Consensus 133 --~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~--~~~~~--~~~~~~V~~l~~~--~~~la~~-~d~~v~ 203 (807)
+..+..+..-|+.. ..-.++.++...+|+++|.+.-+. ..++. .+.++.+.+++.. |+.++.+ ++|.|.
T Consensus 824 pk~~a~~~ikcl~nv~--~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVD--RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred cccCCCceeEecccCc--chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEE
Confidence 22333333333311 112334446777899998763221 11222 3445667888877 8888888 899999
Q ss_pred EEEcCCCceEEeee
Q 003625 204 VYDAANDQRITFIE 217 (807)
Q Consensus 204 iwd~~~~~~~~~i~ 217 (807)
+.|.++|+.+..+.
T Consensus 902 ~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 902 ILDARNGKVINSWR 915 (1034)
T ss_pred EEecCCCceeccCC
Confidence 99999999887643
No 281
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.02 E-value=0.005 Score=66.35 Aligned_cols=187 Identities=13% Similarity=0.214 Sum_probs=116.3
Q ss_pred EEEecCCEEEEEe-cCCeEEEEecC--CCeeE---Eec----------CCCcceeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 003625 59 CVAVAERMIALGT-HAGTVHILDFL--GNQVK---EFP----------AHTAAVNDLSFDVDGEYVGSCSD-DGSVVINS 121 (807)
Q Consensus 59 ~~s~~~~~la~gs-~dg~I~i~d~~--~~~~~---~~~----------~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd 121 (807)
++++++++++++. .+|.|.+++++ |.... .+. .-....+++.|+|+|++++++.. ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 4667899888886 48999999994 33321 121 11235678999999999887654 34789998
Q ss_pred ccCCc--ee---EEecCC--ceEEEEeCCCCCCcCCC-EEEEecCCCeEEEEEccc-CC--ccceEeec------CCcCe
Q 003625 122 LFTDE--KM---KFDYHR--PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKW-LG--YRDQVLHS------GEGPV 184 (807)
Q Consensus 122 ~~~~~--~~---~~~~~~--~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~-~~--~~~~~~~~------~~~~V 184 (807)
+.... +. .+.... ..++++|+|+ ++ .+++.-.++.|.+++..- .+ .....+.. .....
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd-----g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPD-----GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TT-----SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCC-----cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 87643 32 233333 8899999999 55 556667778898887651 11 11111211 11257
Q ss_pred EEEEEe--CCEEEEE--eCCcEEEEEcC--CCce--EEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEE
Q 003625 185 HVVKWR--TSLIAWA--NDAGVKVYDAA--NDQR--ITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASI 253 (807)
Q Consensus 185 ~~l~~~--~~~la~~--~d~~v~iwd~~--~~~~--~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~ 253 (807)
..++++ |+++.++ ..++|.+|++. ++.. +..+... ...+..+.++ ++++|+++ .++.|.+|++
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------GKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------SSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------CCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 788888 7887777 47789999994 2332 2232221 1234566664 77777777 6778999998
Q ss_pred eeC
Q 003625 254 KTN 256 (807)
Q Consensus 254 ~~~ 256 (807)
...
T Consensus 322 d~~ 324 (345)
T PF10282_consen 322 DPD 324 (345)
T ss_dssp ETT
T ss_pred eCC
Confidence 643
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.01 E-value=0.0004 Score=67.32 Aligned_cols=187 Identities=11% Similarity=0.002 Sum_probs=116.9
Q ss_pred CCEEEEEecCCeEEEEecCCCee--EEecCCCcceeEEEEcC-CCCEEEEEeCCCcEEEEeccCCceeE-EecCC-ceEE
Q 003625 64 ERMIALGTHAGTVHILDFLGNQV--KEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMK-FDYHR-PMKA 138 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~~~--~~~~~h~~~V~~l~~s~-~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~~~-~v~~ 138 (807)
-..||.|+..|...+|....+.. .....|...|+-+.=.. ..-.+..++.|.++++.++..+.... ..... .+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34899999999999999965543 23333444333221111 12346677888888888887644332 22222 5899
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccce--EeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce-
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ--VLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR- 212 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~--~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~- 212 (807)
++++|+ +++.++.+....|..|...-.+.... .....+..-.+..|+ ...+|++ .||++.|||++....
T Consensus 164 ~~~snd-----~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 164 LHYSND-----PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eEEcCC-----CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence 999999 89999999999999987754443222 222334445677787 4455555 799999999996433
Q ss_pred EEeeeCCCCCCCCCCCCCeeeee---CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
...+... .+.|...+..+.|+ .-.+|..+ .-+.+.+.|+++..
T Consensus 239 m~~~sst--rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 239 MAEISST--RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred hhhhccc--CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 3332222 22233344445555 22455555 77889999998766
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=0.029 Score=61.34 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=65.8
Q ss_pred CCcCeEEEEEe---CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEe
Q 003625 180 GEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 180 ~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~ 254 (807)
.++.|.+++++ ..+++++.||+|.+||...+..... .. ...+..++|+ +|..+++| ..|.+.+||+.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA-------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee-------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 56778899998 3666777999999999876643322 11 2346788995 77888888 66999999997
Q ss_pred eCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeec
Q 003625 255 TNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPF 291 (807)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~ 291 (807)
-+.-....-..-..|...++....|.....+..+.|.
T Consensus 330 Lspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~ 366 (545)
T PF11768_consen 330 LSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWA 366 (545)
T ss_pred cCccceeeccccCCCccEEeeehhccCcchhheeEec
Confidence 6542221111122244445555555554555555554
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.95 E-value=0.00086 Score=70.03 Aligned_cols=148 Identities=20% Similarity=0.251 Sum_probs=115.2
Q ss_pred EEe-cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCC-cEEEEeccCCceeEEecCC-ce
Q 003625 60 VAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG-SVVINSLFTDEKMKFDYHR-PM 136 (807)
Q Consensus 60 ~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-~v~iwd~~~~~~~~~~~~~-~v 136 (807)
+++ +|+++++.|. |...|++..+.....+ +|.+.|.-..+..+++-++.|..|| .+-|+|..++++..+...- .|
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I 404 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNI 404 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccce
Confidence 555 6888887765 7888888755544333 5777788888888888999999999 8999999999988877666 99
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eC----CcEEEEEcCC
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND----AGVKVYDAAN 209 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d----~~v~iwd~~~ 209 (807)
.+++.+|+ |+.++++...+.+.+.+.. ++.....-.+..+-|+...|+ ++++|-+ .+ ..|++||+.+
T Consensus 405 ~av~vs~d-----GK~~vvaNdr~el~vidid-ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 405 EAVKVSPD-----GKKVVVANDRFELWVIDID-NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEEEcCC-----CcEEEEEcCceEEEEEEec-CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 99999999 8999999887777666664 344334444567889999999 6899887 34 4599999998
Q ss_pred CceEEe
Q 003625 210 DQRITF 215 (807)
Q Consensus 210 ~~~~~~ 215 (807)
++....
T Consensus 479 ~Kiy~v 484 (668)
T COG4946 479 GKIYDV 484 (668)
T ss_pred CeEEEe
Confidence 876553
No 285
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.93 E-value=1.8e-05 Score=69.48 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=51.9
Q ss_pred HHHHhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q 003625 752 VLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKV 806 (807)
Q Consensus 752 ~lL~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 806 (807)
++|+.+++.|||.+||+.||++++|++|++||.++|+.+..+++..+...++.++
T Consensus 2 ~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~ 56 (109)
T PF10367_consen 2 ELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKS 56 (109)
T ss_pred hhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999988764
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.0019 Score=71.05 Aligned_cols=182 Identities=9% Similarity=0.002 Sum_probs=103.3
Q ss_pred EEEEecCCE-EEEEecC---CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEE-eCC--CcEEEEeccCCceeEE
Q 003625 58 SCVAVAERM-IALGTHA---GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSC-SDD--GSVVINSLFTDEKMKF 130 (807)
Q Consensus 58 ~~~s~~~~~-la~gs~d---g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~-~~D--g~v~iwd~~~~~~~~~ 130 (807)
-+|+|+|+. ++..+.+ ..|+++|+.+.....+....+.+....|+|||+.++.. +.+ ..|.++++.++....+
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L 272 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI 272 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc
Confidence 469999984 6654443 56888898666555555555566678899999887644 333 4577778888776665
Q ss_pred ecCC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eC------
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-ND------ 199 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d------ 199 (807)
..+. ......|+|+ |+.++..+ ..|.-.+|.....+.....+...... ...|+ |+.++.. ..
T Consensus 273 T~~~~~d~~p~~SPD-----G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 273 TNYPGIDVNGNFVED-----DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCCCccCccEECCC-----CCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccC
Confidence 4444 3445689999 66555444 45554555444334333222211111 23777 6766655 22
Q ss_pred ---CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEe
Q 003625 200 ---AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (807)
Q Consensus 200 ---~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (807)
..|.+.|+.++.... +.... ......|+ +|..++.. ..+.-.++-+.
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTANG-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCCC-------CcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 247777887775433 22211 12235675 56655544 33443344333
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0042 Score=63.42 Aligned_cols=192 Identities=13% Similarity=0.175 Sum_probs=122.2
Q ss_pred EEEEecCCEEEEEec-CCeEEEEec--CCCe--eEEecCCCcc----------eeEEEEcCCCCEEEEEeCC-CcEEEEe
Q 003625 58 SCVAVAERMIALGTH-AGTVHILDF--LGNQ--VKEFPAHTAA----------VNDLSFDVDGEYVGSCSDD-GSVVINS 121 (807)
Q Consensus 58 ~~~s~~~~~la~gs~-dg~I~i~d~--~~~~--~~~~~~h~~~----------V~~l~~s~~g~~l~s~~~D-g~v~iwd 121 (807)
.|++++|++++++.. .|.|.++-+ +|.. ......|.++ +....+.|+|++|+++.-. -+|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 357778988888765 589999988 3443 1222335554 8888999999999988642 3689999
Q ss_pred ccCCceeE-----EecCCceEEEEeCCCCCCcCCCEE-EEecCCCeEEEEEcccCCccceEeec---------CCcCeEE
Q 003625 122 LFTDEKMK-----FDYHRPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGYRDQVLHS---------GEGPVHV 186 (807)
Q Consensus 122 ~~~~~~~~-----~~~~~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~~~~~~~~---------~~~~V~~ 186 (807)
+..+.... +......+.++|+|+ +++. +++--+++|.+|...-...+...+.. ......+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn-----~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPN-----GKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCC-----CcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 98766542 222227899999999 6654 44566888999976533222222221 2344556
Q ss_pred EEEe--CCEEEEEe--CCcEEEEEcCCC-ceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeCC
Q 003625 187 VKWR--TSLIAWAN--DAGVKVYDAAND-QRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTNQ 257 (807)
Q Consensus 187 l~~~--~~~la~~~--d~~v~iwd~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~~ 257 (807)
|..+ |+++.+++ ..+|.+|.+... ..+..+... +.+..++..+.++ ++++|+++ .++.|.+|.+....
T Consensus 249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~---~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT---PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe---ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 6666 89999883 567888887643 334433322 1122234445553 56666666 66779999887544
No 288
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.00012 Score=79.19 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=67.8
Q ss_pred CCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC
Q 003625 91 AHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (807)
Q Consensus 91 ~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (807)
...+.|.+++++|+.+.++.|+.||.|.+||...+........-.++.++|||+ |..|++|+..|.+.+||....
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~-----gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPD-----GAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCC-----CcEEEEEcCCceEEEEEeecC
Confidence 467789999999999999999999999999998765443433337899999999 899999999999999998744
Q ss_pred CccceEeec
Q 003625 171 GYRDQVLHS 179 (807)
Q Consensus 171 ~~~~~~~~~ 179 (807)
.-+...+.+
T Consensus 332 pi~~qLlsE 340 (545)
T PF11768_consen 332 PIKMQLLSE 340 (545)
T ss_pred ccceeeccc
Confidence 333444433
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=3.1e-05 Score=81.48 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=111.2
Q ss_pred eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC-Cc------ee-EEecCC-ceEEEEeCCCCCCcCCCEEEEe
Q 003625 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DE------KM-KFDYHR-PMKAISLDPDYTRKMSRRFVAG 156 (807)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~------~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g 156 (807)
+..+.+|+..|..++--.+.+-+++++.|.+|++|.++. +. |. ++..|+ +|..+.|-.+ .+.++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----LRSIASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----cceeeec
Confidence 346778998888887666777899999999999999875 21 22 567777 9999999887 5666655
Q ss_pred cCCCeEEEEEcccCCccce-Ee----ecCCcCeEEEEE-e-CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCC
Q 003625 157 GLAGHLYLNSKKWLGYRDQ-VL----HSGEGPVHVVKW-R-TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELL 228 (807)
Q Consensus 157 ~~dg~v~l~~~~~~~~~~~-~~----~~~~~~V~~l~~-~-~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~ 228 (807)
||.+.+||.- -++... .. ++..+.|.|+.- + +-+++.+ ...+|+++|.++......++.-. .+.+...
T Consensus 803 --D~giHlWDPF-igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn-a~~Pna~ 878 (1034)
T KOG4190|consen 803 --DGGIHLWDPF-IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN-APGPNAL 878 (1034)
T ss_pred --cCcceeeccc-ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc-CCCCchh
Confidence 6789999864 333222 11 122233444432 2 3455554 58899999999887766554332 2233334
Q ss_pred CCeeee-eCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 229 LPHLVW-QDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 229 ~~~l~~-~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
+.+++. ..|..+++| .+|+|-+.|.+++.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 445555 478889999 99999999988876
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.84 E-value=0.00021 Score=73.26 Aligned_cols=155 Identities=14% Similarity=0.074 Sum_probs=102.8
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce----e-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK----M-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~----~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
.+..+..+++|+.+|.+..+....++++..... . .....+.-+++.|..+ ......+...|.++-++..-
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-----~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-----DTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-----cceEEEEeecCCceeeeeec
Confidence 345556788899999988888877887765321 1 2223333344444433 34444444444444333321
Q ss_pred C-CccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-e
Q 003625 170 L-GYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-W 244 (807)
Q Consensus 170 ~-~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~ 244 (807)
. ..+...+-+|-..++.++|+ ++++.++ .|..|+|-.....-.+..+ ..+|..++..++..++..|++| .
T Consensus 139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----clGH~eFVS~isl~~~~~LlS~sG 213 (390)
T KOG3914|consen 139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-----CLGHKEFVSTISLTDNYLLLSGSG 213 (390)
T ss_pred ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-----ccccHhheeeeeeccCceeeecCC
Confidence 1 14455567888999999999 7888888 6999988777654444332 4556778888888888888888 9
Q ss_pred CCcEEEEEEeeCCCc
Q 003625 245 GTYIKIASIKTNQSN 259 (807)
Q Consensus 245 d~~i~vw~~~~~~~~ 259 (807)
|+++++||+.++...
T Consensus 214 D~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLL 228 (390)
T ss_pred CCcEEEEecccCCcc
Confidence 999999999988743
No 291
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.81 E-value=0.00012 Score=67.52 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHhhcCCCCcccccCcCC--CCCCCHHHHHHHHHHHhcCCCChHHHHHHhh-cCCcCCCChHHHHHHHHHh
Q 003625 458 ASAWERWVFHFAHLRQLPVLVPYMPTE--NPRLRDTAYEVALVALATNPSFHKYLLSTVK-SWPPVIYSALPVISAIEPQ 534 (807)
Q Consensus 458 ~~~we~~i~~F~~~~~l~~L~~yl~~~--~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~-~~~~~l~~~~~~~~~~~~~ 534 (807)
....+.+|..|.+.+....|.+||... .....+.+++.++..|.+. +.++++++++ . ...|+.+.++..++++
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~--~~~~ll~~l~~~--~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY--DPQKEIERLDNK--SNHYDIEKVGKLCEKA 82 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH--CHHHHHHHHHhc--cccCCHHHHHHHHHHc
Confidence 456789999999888888888888653 2246788999999999875 6678888888 5 4689999999999988
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHc-cCcc-hhhHhhhcc
Q 003625 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYADL-MKPY-IFDFIENHN 581 (807)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~-~~~~-~~~~i~~~~ 581 (807)
. +++++++||.+.|+|++|++++++. .+.+ +++++++.+
T Consensus 83 ~--------l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~ 123 (140)
T smart00299 83 K--------LYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN 123 (140)
T ss_pred C--------cHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC
Confidence 7 9999999999999999999999986 5554 888888755
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.80 E-value=0.00088 Score=69.94 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=90.8
Q ss_pred EEecCCEEEEEecCC-eEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC--ce
Q 003625 60 VAVAERMIALGTHAG-TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR--PM 136 (807)
Q Consensus 60 ~s~~~~~la~gs~dg-~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~--~v 136 (807)
+..+++-++.|+.|| .+-|+|..|..++.+...-+.|.++..+++|++++.+.....+.+.|+.++.+..+...+ -|
T Consensus 367 ~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lI 446 (668)
T COG4946 367 IQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLI 446 (668)
T ss_pred EccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccccee
Confidence 555677889999999 999999999988888888899999999999999999999999999999999988876666 89
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCe----EEEEEc
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGH----LYLNSK 167 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~----v~l~~~ 167 (807)
+.++|||+ ++++|-+--+|- |++++.
T Consensus 447 tdf~~~~n-----sr~iAYafP~gy~tq~Iklydm 476 (668)
T COG4946 447 TDFDWHPN-----SRWIAYAFPEGYYTQSIKLYDM 476 (668)
T ss_pred EEEEEcCC-----ceeEEEecCcceeeeeEEEEec
Confidence 99999999 899999887774 666665
No 293
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.79 E-value=0.0019 Score=69.69 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=97.8
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEEeccCCcee-EEecC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDEKM-KFDYH 133 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~~~-~~~~~ 133 (807)
..+++++|+++.+++.||.|.++|+ +++.+.+++.-.. ..++++|+||++++++. ..+.+.++|..+.+.. .+...
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 3467889999999999999999999 4666777766544 56799999999988765 6899999999986544 33221
Q ss_pred -------C-ceEEEEeCCCCCCcCCC-EEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--eCC
Q 003625 134 -------R-PMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDA 200 (807)
Q Consensus 134 -------~-~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~--~d~ 200 (807)
. .+.++..+|. .. ++++--..|.|.+.+..-...................|+ ++++..+ .++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~-----~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn 194 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPG-----RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN 194 (369)
T ss_dssp EE-TTTS---EEEEEE-SS-----SSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT
T ss_pred cccccccCCCceeEEecCC-----CCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccc
Confidence 2 5677877787 45 444555557776655431111111122223345677888 5665544 577
Q ss_pred cEEEEEcCCCceEEeeeC
Q 003625 201 GVKVYDAANDQRITFIER 218 (807)
Q Consensus 201 ~v~iwd~~~~~~~~~i~~ 218 (807)
.+-++|..+++....+..
T Consensus 195 ~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 195 KIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp EEEEEETTTTEEEEEEE-
T ss_pred eeEEEeeccceEEEEeec
Confidence 899999999888776654
No 294
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=97.78 E-value=4.9e-06 Score=77.20 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHhhcCCCCcccccCcCC---CCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHh
Q 003625 458 ASAWERWVFHFAHLRQLPVLVPYMPTE---NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQ 534 (807)
Q Consensus 458 ~~~we~~i~~F~~~~~l~~L~~yl~~~---~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~ 534 (807)
...-++||..|.+++.+..|.+||... .+..++.+++.++..|.+.. ..+++++++++... |++..+...+++.
T Consensus 7 ~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~~--yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 7 PLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSNN--YDLDKALRLCEKH 83 (143)
T ss_dssp TSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSSS--S-CTHHHHHHHTT
T ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHcccccc--cCHHHHHHHHHhc
Confidence 445678899999999999999999764 35678999999999999873 33889999997543 9999999999988
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCc-chhhHhhhccchHHH
Q 003625 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKP-YIFDFIENHNLHDAI 586 (807)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~-~~~~~i~~~~~~~~~ 586 (807)
. +++++++||.+.|+|++|+.++.++++. .+++++.+.+..+..
T Consensus 84 ~--------l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~ 128 (143)
T PF00637_consen 84 G--------LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELW 128 (143)
T ss_dssp T--------SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHH
T ss_pred c--------hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHH
Confidence 7 9999999999999999999986666664 488888888754333
No 295
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.78 E-value=0.00034 Score=77.41 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=83.5
Q ss_pred EEEEecCCEEEEEe-cCCeEEEE--ecC--CCeeEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccCCceeE
Q 003625 58 SCVAVAERMIALGT-HAGTVHIL--DFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFTDEKMK 129 (807)
Q Consensus 58 ~~~s~~~~~la~gs-~dg~I~i~--d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~~~~~~ 129 (807)
.+|+|+|+.|+..+ .+|...+| +.+ +.....+..+...+....|||||++|+.++.+ ..|.+||+.+++...
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 47999999888766 45654454 443 33344555555567788999999999877653 368999999888776
Q ss_pred EecCC-ceEEEEeCCCCCCcCCCEEEE-ecCCC--eEEEEEcccCCccceEeecCCcCeEEEEEe
Q 003625 130 FDYHR-PMKAISLDPDYTRKMSRRFVA-GGLAG--HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (807)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~-g~~dg--~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~ 190 (807)
+.... .+.+..|+|+ ++.++. +...| .+.+++. .+.....+....+.+...+|+
T Consensus 366 Lt~~~~~~~~p~wSpD-----G~~L~f~~~~~g~~~L~~vdl--~~g~~~~Lt~~~g~~~~p~Ws 423 (428)
T PRK01029 366 LTTSPENKESPSWAID-----SLHLVYSAGNSNESELYLISL--ITKKTRKIVIGSGEKRFPSWG 423 (428)
T ss_pred ccCCCCCccceEECCC-----CCEEEEEECCCCCceEEEEEC--CCCCEEEeecCCCcccCceec
Confidence 65444 6778999999 776664 43333 3544444 344444454455566666776
No 296
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.78 E-value=0.0016 Score=79.86 Aligned_cols=148 Identities=12% Similarity=0.052 Sum_probs=99.5
Q ss_pred EEEEe-cCCEEEEEecCCeEEEEecCCCeeEEecCC---------------CcceeEEEEcCCCCE-EEEEeCCCcEEEE
Q 003625 58 SCVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAH---------------TAAVNDLSFDVDGEY-VGSCSDDGSVVIN 120 (807)
Q Consensus 58 ~~~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h---------------~~~V~~l~~s~~g~~-l~s~~~Dg~v~iw 120 (807)
.++++ ++..+++.+.++.|++||..+..+..+.+. -...+.++++|+|.. +++-+.++.|++|
T Consensus 688 Va~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~ 767 (1057)
T PLN02919 688 VCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL 767 (1057)
T ss_pred EEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence 46777 566667777889999999865544433221 123457899999985 4555667899999
Q ss_pred eccCCceeEEec-----------------------CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEe
Q 003625 121 SLFTDEKMKFDY-----------------------HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL 177 (807)
Q Consensus 121 d~~~~~~~~~~~-----------------------~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~ 177 (807)
|+.++....+.+ .....+++++|+ ++.+++-+.++.|++|+.. +.....+
T Consensus 768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-----G~LYVADs~N~rIrviD~~--tg~v~ti 840 (1057)
T PLN02919 768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-----GQIYVADSYNHKIKKLDPA--TKRVTTL 840 (1057)
T ss_pred ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC-----CcEEEEECCCCEEEEEECC--CCeEEEE
Confidence 998755332110 012358899998 7888998999999999864 2222222
Q ss_pred ec--------------CCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCce
Q 003625 178 HS--------------GEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 178 ~~--------------~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~ 212 (807)
.+ .-....+++++ |+++++. .++.|++||+.++..
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11 11245678887 6766665 688999999998765
No 297
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.77 E-value=0.048 Score=58.79 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=116.8
Q ss_pred eEEEEecCCEEEEEec----CCeEEEEecCC---Ce--eEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEEeccC-C
Q 003625 57 ASCVAVAERMIALGTH----AGTVHILDFLG---NQ--VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFT-D 125 (807)
Q Consensus 57 i~~~s~~~~~la~gs~----dg~I~i~d~~~---~~--~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~-~ 125 (807)
-.++++++++|.+... +|.|..|.+.. .. +.+.......-..++++|+|++++++. .+|.|.++++.. +
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 3478889998888766 57999998843 22 233332334456799999999998887 589999999987 4
Q ss_pred ceeE----Eec----------CC-ceEEEEeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccc---eEee-cCCcCeE
Q 003625 126 EKMK----FDY----------HR-PMKAISLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRD---QVLH-SGEGPVH 185 (807)
Q Consensus 126 ~~~~----~~~----------~~-~v~~v~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~---~~~~-~~~~~V~ 185 (807)
.+.. +.. .. ...++.|+|+ ++++++.. ....|.+|+..-..... ..+. .....-.
T Consensus 121 ~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-----g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-----GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-----SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccceeeeecccCCCCCcccccccccceeEEECCC-----CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 4322 110 11 5789999999 77666543 33468777664222111 1121 2223457
Q ss_pred EEEEe--CCEEEEE--eCCcEEEEEcC--CCc--eEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEe
Q 003625 186 VVKWR--TSLIAWA--NDAGVKVYDAA--NDQ--RITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIK 254 (807)
Q Consensus 186 ~l~~~--~~~la~~--~d~~v~iwd~~--~~~--~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~ 254 (807)
.+.|+ ++++... .++.|.+|++. ++. .+..+...............+..+ ++++|.++ ..+.|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 88898 5666555 48889999998 332 222333221111122234455554 77887777 67789999995
Q ss_pred e
Q 003625 255 T 255 (807)
Q Consensus 255 ~ 255 (807)
.
T Consensus 276 ~ 276 (345)
T PF10282_consen 276 P 276 (345)
T ss_dssp T
T ss_pred c
Confidence 4
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.73 E-value=0.00012 Score=79.99 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=108.3
Q ss_pred EEEecC--CEEEEEecCCeEEEEecC---CCe-eEEecCCCcceeEEEEcCCC-CEEEEEeCCCcEEEEeccCCc--eeE
Q 003625 59 CVAVAE--RMIALGTHAGTVHILDFL---GNQ-VKEFPAHTAAVNDLSFDVDG-EYVGSCSDDGSVVINSLFTDE--KMK 129 (807)
Q Consensus 59 ~~s~~~--~~la~gs~dg~I~i~d~~---~~~-~~~~~~h~~~V~~l~~s~~g-~~l~s~~~Dg~v~iwd~~~~~--~~~ 129 (807)
-|+|+. .+-++.++...-.+|++. .+. -..+.+|+.+|+.+.|+|.. ..+++++.|..|..||+++.. +..
T Consensus 74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 466643 345556666666789882 222 34567899999999999865 468999999999999999843 344
Q ss_pred EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe----CCEEEEEeCCcEEE
Q 003625 130 FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWANDAGVKV 204 (807)
Q Consensus 130 ~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~----~~~la~~~d~~v~i 204 (807)
+..-+ ....|+|+-. ...+.+.+....|.+|+.+..+.....+++|-..|.++.|. +.++.+++|++|+.
T Consensus 154 ~~~w~s~asqVkwnyk-----~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYK-----DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred eecccccCceeeeccc-----CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 44333 7788999765 33344445556799999987777788888898999999998 67777779999999
Q ss_pred EEcCC
Q 003625 205 YDAAN 209 (807)
Q Consensus 205 wd~~~ 209 (807)
||...
T Consensus 229 w~y~k 233 (1081)
T KOG0309|consen 229 WDYSK 233 (1081)
T ss_pred ecccc
Confidence 99864
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.73 E-value=0.00056 Score=67.57 Aligned_cols=207 Identities=12% Similarity=0.168 Sum_probs=124.2
Q ss_pred CCccccCCCceEEEEe--cCCEEEEEecCCeEEEEecCC------CeeEEecCCC------------cceeEEEEcCCC-
Q 003625 47 SLPSLLANDAASCVAV--AERMIALGTHAGTVHILDFLG------NQVKEFPAHT------------AAVNDLSFDVDG- 105 (807)
Q Consensus 47 ~~~~~~~~~~i~~~s~--~~~~la~gs~dg~I~i~d~~~------~~~~~~~~h~------------~~V~~l~~s~~g- 105 (807)
.+...-..+.|+++-. .|.++++|...|.|.+|.... +....+++|. ..|..+.|..++
T Consensus 19 d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 19 DLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred hcccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 3444444556777555 578999999999999998631 1134456654 467788887554
Q ss_pred -CEEEEEeCCCcEEEEeccCCc-------------------------------------------eeEE-ecCC-ceEEE
Q 003625 106 -EYVGSCSDDGSVVINSLFTDE-------------------------------------------KMKF-DYHR-PMKAI 139 (807)
Q Consensus 106 -~~l~s~~~Dg~v~iwd~~~~~-------------------------------------------~~~~-~~~~-~v~~v 139 (807)
.+++..+.|.++++|-+.... +... ..|. -++++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 356777789999999865320 0011 3344 67788
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEe--ecCC-----cCeEEEEEeC----CEEEEEeCCcEEEEEcC
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL--HSGE-----GPVHVVKWRT----SLIAWANDAGVKVYDAA 208 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~--~~~~-----~~V~~l~~~~----~~la~~~d~~v~iwd~~ 208 (807)
.|..+ ...+++ +.|=.|.+|..........++ +.|. ..|++..|++ .+..+++.|.|++.|++
T Consensus 179 S~NsD-----~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 179 SFNSD-----KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eecCc-----hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 88777 344444 456688999765333332222 2332 4578888883 34455589999999998
Q ss_pred CCc------eEE--eeeCCC--CCCCCCCCCCeeeeeCCC-EEEEEeCCcEEEEEEeeCCCc
Q 003625 209 NDQ------RIT--FIERPR--GSPRPELLLPHLVWQDDT-LLVIGWGTYIKIASIKTNQSN 259 (807)
Q Consensus 209 ~~~------~~~--~i~~~~--~~~~~~~~~~~l~~~~~~-~l~~g~d~~i~vw~~~~~~~~ 259 (807)
... .+. ++.... ........+..+.|+++. ++++-.-.+|++||++....+
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCC
Confidence 431 111 111110 001112235566776554 555557788999999876533
No 300
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=97.72 E-value=0.00023 Score=61.49 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=61.2
Q ss_pred HHHHHHHHHhchHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhC
Q 003625 654 DMQVELYADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLG 718 (807)
Q Consensus 654 ~~l~~ly~~~~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~ 718 (807)
+.|+.+|+..++..+.+||+..+..+++.+-+..++.+++.|.+.+|..-|+|++||.++..-..
T Consensus 3 TaLlk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999997543
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.72 E-value=0.0052 Score=73.99 Aligned_cols=192 Identities=15% Similarity=0.215 Sum_probs=121.8
Q ss_pred CceEEEE--ecCCEEEEEecCCeEEEE----ecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC----
Q 003625 55 DAASCVA--VAERMIALGTHAGTVHIL----DFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT---- 124 (807)
Q Consensus 55 ~~i~~~s--~~~~~la~gs~dg~I~i~----d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~---- 124 (807)
+.+.++. ++...++++..+|.|.+. +.....+...-.-...|.+++||||++.++.+..+|++.+.+..-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 3455544 477789999999999999 555554544444667899999999999999999898887654210
Q ss_pred ---------C----------ce-eEEec------------------------CC-ceEEEEeCCCCCCcCCCEEEEecC-
Q 003625 125 ---------D----------EK-MKFDY------------------------HR-PMKAISLDPDYTRKMSRRFVAGGL- 158 (807)
Q Consensus 125 ---------~----------~~-~~~~~------------------------~~-~v~~v~~~p~~~~~~~~~l~~g~~- 158 (807)
+ +. ..|.+ .. .-..++|-.| |.+||+.+.
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD-----G~yFAVss~~ 230 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD-----GEYFAVSSVE 230 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC-----CcEEEEEEEE
Confidence 0 00 00100 00 2345778888 899998875
Q ss_pred --C---CeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe----CCcEEEEEcCCCceEEeeeCCCCCCCCCC
Q 003625 159 --A---GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN----DAGVKVYDAANDQRITFIERPRGSPRPEL 227 (807)
Q Consensus 159 --d---g~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~----d~~v~iwd~~~~~~~~~i~~~~~~~~~~~ 227 (807)
. ..+++|++. |.-..+-..-.|--.+++|. |+++|++. ...|.+|.- +|-.-..+..+. .....
T Consensus 231 ~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~--~~~~~ 305 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF--DPEEE 305 (928)
T ss_pred cCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC--CCCCc
Confidence 3 358888764 33222222223334567887 89999883 234666664 343333333332 11233
Q ss_pred CCCeeeee-CCCEEEEEeCCcEEEEEEeeC
Q 003625 228 LLPHLVWQ-DDTLLVIGWGTYIKIASIKTN 256 (807)
Q Consensus 228 ~~~~l~~~-~~~~l~~g~d~~i~vw~~~~~ 256 (807)
.+..+.|+ ++..|++-..+.|++|-...-
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY 335 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLWTRSNY 335 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEEEeeCC
Confidence 46789996 788888886667999976543
No 302
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.0065 Score=66.76 Aligned_cols=379 Identities=13% Similarity=0.144 Sum_probs=177.7
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEE-eccCCceeEEecCCce
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN-SLFTDEKMKFDYHRPM 136 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iw-d~~~~~~~~~~~~~~v 136 (807)
.+.+|+|+++++ +.+|.-.|+...+..-... +.-....|.+.+ .+|+-..+++|.|+ ++......++.....+
T Consensus 38 ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~ 111 (443)
T PF04053_consen 38 LSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLPFSV 111 (443)
T ss_dssp EEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred EEECCCCCEEEE-EcCCEEEEEEccCCccccc----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence 478899999988 5567777887543332222 334556799855 46777778899995 5544443333333233
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCc---
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQ--- 211 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~--- 211 (807)
..+-. |..+...+.+ .|.+||.. .+.....+.. .+|..+.|+ |.+++..++.++.|++.....
T Consensus 112 ~~If~--------G~LL~~~~~~-~i~~yDw~-~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 112 EKIFG--------GNLLGVKSSD-FICFYDWE-TGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp EEEE---------SSSEEEEETT-EEEEE-TT-T--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred ceEEc--------CcEEEEECCC-CEEEEEhh-HcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 33322 3556665544 79998764 3344444432 248999999 789999888899998876440
Q ss_pred --------eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeece
Q 003625 212 --------RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSY 283 (807)
Q Consensus 212 --------~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 283 (807)
....+... ...+.+..|.++ .++-...+.++. +-.|.
T Consensus 180 ~~~~g~e~~f~~~~E~------~~~IkSg~W~~d-~fiYtT~~~lkY--l~~Ge-------------------------- 224 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEI------SERIKSGCWVED-CFIYTTSNHLKY--LVNGE-------------------------- 224 (443)
T ss_dssp BTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TTEEEE--EETTE--------------------------
T ss_pred ccccCchhceEEEEEe------cceeEEEEEEcC-EEEEEcCCeEEE--EEcCC--------------------------
Confidence 11111110 112556677655 333333335554 22221
Q ss_pred EEEeeeecCCceEEEEeecCCCCCcccccCCCCcccCCCCCCeEEEeccCCcccccCccccCccccccccCcccccccCC
Q 003625 284 YISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAHAPFS 363 (807)
Q Consensus 284 ~i~gi~~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (807)
..-|..+...+.++++.+. ...+.++|++...+ +-.+.+.-+ .|.++..-
T Consensus 225 -~~~i~~ld~~~yllgy~~~--------------------~~~ly~~Dr~~~v~-~~~ld~~~~------~fk~av~~-- 274 (443)
T PF04053_consen 225 -TGIIAHLDKPLYLLGYLPK--------------------ENRLYLIDRDGNVI-SYELDLSEL------EFKTAVLR-- 274 (443)
T ss_dssp -EEEEEE-SS--EEEEEETT--------------------TTEEEEE-TT--EE-EEE--HHHH------HHHHHHHT--
T ss_pred -cceEEEcCCceEEEEEEcc--------------------CCEEEEEECCCCEE-EEEECHHHH------HHHHHHHc--
Confidence 1225556677778887642 23566667654322 111111000 01111100
Q ss_pred CCCCCCCcccCCCCCEEEEECCCcEEEEEeCChhhHH-HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCccc
Q 003625 364 GSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHI-AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERK 442 (807)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~v~s~~~i~~~~~~~~~d~i-~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 442 (807)
...+...-.+....++-..|.+..+++ ..|-++|..+.||++++. .+.+-+++ ++-|+
T Consensus 275 ----------~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D----~~~rFeLA-------l~lg~ 333 (443)
T PF04053_consen 275 ----------GDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD----PDHRFELA-------LQLGN 333 (443)
T ss_dssp ----------T-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-----HHHHHHHH-------HHCT-
T ss_pred ----------CChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC----hHHHhHHH-------HhcCC
Confidence 000000001111122212233334444 778889999999999653 22333343 34566
Q ss_pred HHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCC
Q 003625 443 YAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIY 522 (807)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~ 522 (807)
.+.|.+....+- +..-|.+.-...+..+.++. .-.+|.+.+ |..+++=+-..
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l-------------------Ae~c~~k~~-d~~~L~lLy~~------ 385 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIEL-------------------AEECYQKAK-DFSGLLLLYSS------ 385 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH-------------------HHHHHHHCT--HHHHHHHHHH------
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH-------------------HHHHHHhhc-CccccHHHHHH------
Confidence 777777643332 36688888888887775332 122332221 33322211000
Q ss_pred ChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcc-hhhHhhhccchH
Q 003625 523 SALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPY-IFDFIENHNLHD 584 (807)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~-~~~~i~~~~~~~ 584 (807)
..+..-.+.++......|++.-|+.+.+-+++.+ ..+.+.+.+.+.
T Consensus 386 ----------------~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~ 432 (443)
T PF04053_consen 386 ----------------TGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLP 432 (443)
T ss_dssp ----------------CT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred ----------------hCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence 0011244556677778888888888888887754 777777766443
No 303
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.0043 Score=66.55 Aligned_cols=178 Identities=17% Similarity=0.284 Sum_probs=114.6
Q ss_pred EEec--CCEEEE-----EecCCeEEEEecC--CCe----eEEecCCCcceeEEEEcCCCCEE---EEEeCCC--------
Q 003625 60 VAVA--ERMIAL-----GTHAGTVHILDFL--GNQ----VKEFPAHTAAVNDLSFDVDGEYV---GSCSDDG-------- 115 (807)
Q Consensus 60 ~s~~--~~~la~-----gs~dg~I~i~d~~--~~~----~~~~~~h~~~V~~l~~s~~g~~l---~s~~~Dg-------- 115 (807)
++|. ..++|+ ++.-+.|+||... +.. .++|- -.+.| .+.|++-|+-| ++..-|.
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 4554 335555 4556789999875 211 12221 11233 47899888753 2333343
Q ss_pred -cEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEE--ecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-
Q 003625 116 -SVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVA--GGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR- 190 (807)
Q Consensus 116 -~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~--g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~- 190 (807)
++++.++.+..+. .+....||.++.|+|+ ++.|++ |-.-..+.+++.+ ...++.-.+|+=+++-|+
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s-----~~EF~VvyGfMPAkvtifnlr----~~~v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPS-----GREFAVVYGFMPAKVTIFNLR----GKPVFDFPEGPRNTAFFNP 321 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCC-----CCEEEEEEecccceEEEEcCC----CCEeEeCCCCCccceEECC
Confidence 4677777633332 2333449999999999 765554 4555678887653 334445567888899999
Q ss_pred -CCEEEEE--e--CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--e-----CCcEEEEEEeeC
Q 003625 191 -TSLIAWA--N--DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--W-----GTYIKIASIKTN 256 (807)
Q Consensus 191 -~~~la~~--~--d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~-----d~~i~vw~~~~~ 256 (807)
|++++.+ + .|.+-|||+.+.+.+..+.... ..-+.|+ +|.+++++ . |+.++||+....
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--------tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--------TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhhccccccCC--------ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 7777655 2 6889999999988887765543 3456786 78888877 2 788999998654
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.69 E-value=0.00018 Score=78.77 Aligned_cols=189 Identities=13% Similarity=0.136 Sum_probs=127.1
Q ss_pred eEEEEecCCEEEEEecCCeEEEEec--CCCeeEEecCCCc--ceeEEEEcCCC--CEEEEEeCCCcEEEEeccCC---ce
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDF--LGNQVKEFPAHTA--AVNDLSFDVDG--EYVGSCSDDGSVVINSLFTD---EK 127 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~--~~~~~~~~~~h~~--~V~~l~~s~~g--~~l~s~~~Dg~v~iwd~~~~---~~ 127 (807)
..+++|.|+-+|+++.-|. .+.|+ .+++.+-+. |.. .|..+.|+|.. .+-+.......-.+|++... .+
T Consensus 29 a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred ceeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 4478889999999888774 45565 344433332 222 35667787653 33333344556778988652 22
Q ss_pred e-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe---CCEEEEEeCCcE
Q 003625 128 M-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWANDAGV 202 (807)
Q Consensus 128 ~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~---~~~la~~~d~~v 202 (807)
- .+.+|. .|+.+.|+|. ....+++++.|-.+..|+.+-.....-....-....+.++|+ |..+|++..+.|
T Consensus 107 ef~lhghsraitd~n~~~q----~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQ----HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred EEEEecCccceeccccCCC----CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 2 345666 9999999998 467899999999999999874434444444444567789999 889999888999
Q ss_pred EEEEcCCCc-eEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEEeCCcEEEEEEeeCC
Q 003625 203 KVYDAANDQ-RITFIERPRGSPRPELLLPHLVWQ---DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 203 ~iwd~~~~~-~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
++||.+.|. ++..++++ ...+..+.|. .+..+.++.|++|++|+.....
T Consensus 183 ~vwd~r~gs~pl~s~K~~------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGH------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred EEEeccCCCcceEEeccc------ceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 999998654 45555443 2334555553 4455666699999999987544
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.0076 Score=66.42 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=85.3
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCE-EEEEeCC---CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCc
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEY-VGSCSDD---GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRK 148 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~-l~s~~~D---g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~ 148 (807)
..|.+-|.+|...+.+.... .+..-.|+|||+. ++..+.+ ..|.++|+.+++...+.... ...+..|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPD---- 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKD---- 243 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCC----
Confidence 46777788877655554443 7778999999985 5544433 46888999888777664444 6677889999
Q ss_pred CCCEEE-EecCCCe--EEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCC----cEEEEEcCCCceEE
Q 003625 149 MSRRFV-AGGLAGH--LYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDA----GVKVYDAANDQRIT 214 (807)
Q Consensus 149 ~~~~l~-~g~~dg~--v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~----~v~iwd~~~~~~~~ 214 (807)
|+.++ +.+.+|. |.+++. .+.....+..+.+......|+ |+.++..++. .|.++|+.+++...
T Consensus 244 -G~~la~~~~~~g~~~Iy~~dl--~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r 315 (419)
T PRK04043 244 -GSKLLLTMAPKGQPDIYLYDT--NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ 315 (419)
T ss_pred -CCEEEEEEccCCCcEEEEEEC--CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence 65544 4444544 555443 333444444444434455788 6666655433 58888888776644
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00015 Score=72.72 Aligned_cols=150 Identities=14% Similarity=0.197 Sum_probs=101.4
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC--Ccc-c
Q 003625 100 SFDV--DGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL--GYR-D 174 (807)
Q Consensus 100 ~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~--~~~-~ 174 (807)
+|+- .|-+ ++.|.+..|-+-|+.++.-..+.....|.+..|+.. ++.+..|+.+|.|...|.+-- |.. .
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s-----~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGS-----DNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccccchhHHHHHhccc-----CCeeEecccCCcEEEEEeeecccCCCcc
Confidence 4543 3445 566777889999999988777875558999999887 789999999999999987632 111 2
Q ss_pred eEeecCCcCeEEEE---EeCCEEE-EEeCCcEEEEEcCCCce---EEeeeCCCCCCCCCCCCC-eeeeeCCCEEEEEeCC
Q 003625 175 QVLHSGEGPVHVVK---WRTSLIA-WANDAGVKVYDAANDQR---ITFIERPRGSPRPELLLP-HLVWQDDTLLVIGWGT 246 (807)
Q Consensus 175 ~~~~~~~~~V~~l~---~~~~~la-~~~d~~v~iwd~~~~~~---~~~i~~~~~~~~~~~~~~-~l~~~~~~~l~~g~d~ 246 (807)
....-|...|+++. |+++++. ++.+|.|++||.+.-++ +...+.|.+. ..+.+ .+.-..+..+++|.|=
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~---~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL---SAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc---ccccccccccccceEEEccCee
Confidence 22334777888864 5555555 45899999999997666 6666655322 11222 1211244455544666
Q ss_pred cEEEEEEeeCCC
Q 003625 247 YIKIASIKTNQS 258 (807)
Q Consensus 247 ~i~vw~~~~~~~ 258 (807)
..+||.++.+..
T Consensus 369 ytRiWsl~~ghL 380 (425)
T KOG2695|consen 369 YTRIWSLDSGHL 380 (425)
T ss_pred EEEEEecccCce
Confidence 689999998763
No 307
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0035 Score=67.21 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=99.5
Q ss_pred cccCCCceE-EEEecCC-EEEEEec--C---------CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEE--EeCC
Q 003625 50 SLLANDAAS-CVAVAER-MIALGTH--A---------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS--CSDD 114 (807)
Q Consensus 50 ~~~~~~~i~-~~s~~~~-~la~gs~--d---------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s--~~~D 114 (807)
.+|..+.+. .|..-|+ +|+..+. | .++++++.+|.....--.-.++|+++.|+|+|+-++. |..=
T Consensus 214 sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 214 SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP 293 (566)
T ss_pred cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc
Confidence 345555443 3666555 3333322 2 3677777776554333345789999999999987655 4456
Q ss_pred CcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecC---CCeEEEEEcccCCccceEeecCCcCeEEEEEe
Q 003625 115 GSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR 190 (807)
Q Consensus 115 g~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~ 190 (807)
-++.|+|++...+. .... +=+++-|+|. |++++.+|- .|.+-+||.. +.+.+..+.... .+-+.|+
T Consensus 294 Akvtifnlr~~~v~--df~egpRN~~~fnp~-----g~ii~lAGFGNL~G~mEvwDv~-n~K~i~~~~a~~--tt~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVF--DFPEGPRNTAFFNPH-----GNIILLAGFGNLPGDMEVWDVP-NRKLIAKFKAAN--TTVFEWS 363 (566)
T ss_pred ceEEEEcCCCCEeE--eCCCCCccceEECCC-----CCEEEEeecCCCCCceEEEecc-chhhccccccCC--ceEEEEc
Confidence 78999998754443 3334 7788999999 888877655 4789999985 233333333322 3456788
Q ss_pred --CCEEEEE--e-----CCcEEEEEcCCCceEE
Q 003625 191 --TSLIAWA--N-----DAGVKVYDAANDQRIT 214 (807)
Q Consensus 191 --~~~la~~--~-----d~~v~iwd~~~~~~~~ 214 (807)
|.++.++ . |++++||+.. |..+.
T Consensus 364 PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 7776655 2 7899999986 44443
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.59 E-value=0.0079 Score=61.43 Aligned_cols=173 Identities=22% Similarity=0.275 Sum_probs=110.7
Q ss_pred EEEecCCEEEEE-----ecCCeEEEEecC--CCeeEEecCCCcceeEEEEcCCCCEEEEEeC-------CC---------
Q 003625 59 CVAVAERMIALG-----THAGTVHILDFL--GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-------DG--------- 115 (807)
Q Consensus 59 ~~s~~~~~la~g-----s~dg~I~i~d~~--~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-------Dg--------- 115 (807)
+|+++|++|.+. +..|.|-|||.. -..+..+..|.-.-..+.+.|||+.|+.+.. .|
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 689999988875 456899999997 3346777777666677889999977766531 12
Q ss_pred --cEEEEeccCCcee-E--E--ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe-------EEEEEcccCCccceEee--
Q 003625 116 --SVVINSLFTDEKM-K--F--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-------LYLNSKKWLGYRDQVLH-- 178 (807)
Q Consensus 116 --~v~iwd~~~~~~~-~--~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-------v~l~~~~~~~~~~~~~~-- 178 (807)
.+...|..++++. + + ..++ .|..++++++ +..++..-..|. |-++.. +.....+.
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-----G~V~~a~Q~qg~~~~~~PLva~~~~---g~~~~~~~~p 208 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-----GTVAFAMQYQGDPGDAPPLVALHRR---GGALRLLPAP 208 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecCC-----CcEEEEEecCCCCCccCCeEEEEcC---CCcceeccCC
Confidence 3444555566554 2 3 3355 8899999888 544444322221 222221 11122222
Q ss_pred -----cCCcCeEEEEEe--CCEEEEE--eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCc
Q 003625 179 -----SGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTY 247 (807)
Q Consensus 179 -----~~~~~V~~l~~~--~~~la~~--~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~ 247 (807)
.-.+.|-+|+++ +.+++.+ ..+.+.+||..++..+.....+. +|.++...+.+++++..|.
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--------~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--------ACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--------eeeeeecCCceEEeCCCcc
Confidence 124678999998 5566555 47889999999999988766554 5666665555666655554
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.56 E-value=0.00028 Score=68.13 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=57.6
Q ss_pred ceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCc--eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 95 AVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDE--KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 95 ~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~--~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.|++++-+|..+ .+++|+.||.+-+||.+... ...+..|+ +++.|-|+|. .+..+++++.||.+..|+..
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk----~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK----NPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC----CchheeEecCCCcEEEEcCC
Confidence 489999888654 56778889999999998853 23467788 9999999998 57899999999999988753
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.00014 Score=79.96 Aligned_cols=186 Identities=21% Similarity=0.279 Sum_probs=114.7
Q ss_pred EEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEE---------eCCCcEEEEeccCCceeEEe----
Q 003625 66 MIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSC---------SDDGSVVINSLFTDEKMKFD---- 131 (807)
Q Consensus 66 ~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~---------~~Dg~v~iwd~~~~~~~~~~---- 131 (807)
.+|+|++.|+|.++|+..+. ...+..|++.|.++.|-....++-.+ +.-+.+.+-|+++|....+.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 68999999999999996554 56778899999999998665544222 22245678899998766553
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC-eEEEEEe-C-----------------
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP-VHVVKWR-T----------------- 191 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~-V~~l~~~-~----------------- 191 (807)
..+ ||..+..+.. +++++....+.-+.+|+.+. ....+ ...-.-| ++.+.|+ +
T Consensus 519 ~despI~~irvS~~-----~~yLai~Fr~~plEiwd~kt-~~~lr-~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms 591 (1062)
T KOG1912|consen 519 PDESPIRAIRVSSS-----GRYLAILFRREPLEIWDLKT-LRMLR-LMSLALPLITVLEWSLPKHPSIKQKELSKQSSMS 591 (1062)
T ss_pred CCcCcceeeeeccc-----CceEEEEecccchHHHhhcc-chHHH-HHhhcCCcEEEEeecccCCCCcccccchhhhhhh
Confidence 223 9999999988 89999999999999998741 11111 1122233 7788887 2
Q ss_pred -CEEEEEeCCcEEEEEcCC-CceEEeeeC-CCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCCCcC
Q 003625 192 -SLIAWANDAGVKVYDAAN-DQRITFIER-PRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQSNV 260 (807)
Q Consensus 192 -~~la~~~d~~v~iwd~~~-~~~~~~i~~-~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~~~~ 260 (807)
+.++..+ +..+++.+.. +........ ...........+.++| .+..++.| .+|.+.+||+..+.+.+
T Consensus 592 ~n~vv~ds-~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw-k~d~lv~GD~~GNl~~WDlg~R~SRg 662 (1062)
T KOG1912|consen 592 ENLVVLDS-VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW-KDDILVVGDVEGNLVVWDLGRRQSRG 662 (1062)
T ss_pred hceeeecc-ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc-cCCeeEeecccCceeEEecccccccC
Confidence 1122111 1222232221 111100000 0000011122455777 55678888 99999999988776444
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.47 E-value=0.00037 Score=47.91 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=31.4
Q ss_pred eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
..+.+|. +|++++|+|+ +..|++|+.||.|++|+
T Consensus 5 ~~~~~h~~~i~~i~~~~~-----~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPD-----GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETT-----SSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecc-----cccceeeCCCCEEEEEC
Confidence 4678888 9999999999 89999999999999996
No 312
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.23 Score=58.03 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=183.3
Q ss_pred CCCEEEEECCCcEEEEE-eCChhhHHHHHHhcccHHHHHHHHHhc-----CCCc---hhHhHHHHHHHHHHhCcccHHHH
Q 003625 376 DEPLYYIVSPKDVVIAK-PRDAEDHIAWLLEHGWHEKALAAVEAG-----QGRS---ELLDEVGSRYLDHLIVERKYAEA 446 (807)
Q Consensus 376 ~~~~~~v~s~~~i~~~~-~~~~~d~i~~ll~~~~~~~Al~~~~~~-----~~~~---~~~~~i~~~~~~~l~~~~~~~~A 446 (807)
..+.+|+++.+.++... ...|+++....+......++.++.... ...+ .....+..+.-+++.. -..|
T Consensus 410 ~~g~llvl~e~~~~llq~y~~w~ern~f~~~~~~~~dv~ql~~~~y~~~lk~~~k~~~a~ea~~~~t~~~l~~---v~~v 486 (1206)
T KOG2079|consen 410 LKGHLLVLTEDGLVLLQPYCPWDERNNFSVAGLSGNDVIQLHTYFYTNSLKRLRKAYHASEAVSGLTVYYLGV---VHRV 486 (1206)
T ss_pred cccceeeeehhhHHHhccccchhhhhhhhhcccchhHHHHHHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHH---HHHH
Confidence 34479999999988886 788898888888888888888776431 1000 0001111111111111 1111
Q ss_pred HhHhhH-------hhccChhhHHHHHHHHhhcCC---CCcccccCcCC-CCCCCHHHHHHHHHHHhcCCCChHHHHHHhh
Q 003625 447 ASLCPK-------LLRGSASAWERWVFHFAHLRQ---LPVLVPYMPTE-NPRLRDTAYEVALVALATNPSFHKYLLSTVK 515 (807)
Q Consensus 447 ~~~~~~-------~~~~~~~~we~~i~~F~~~~~---l~~L~~yl~~~-~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~ 515 (807)
.+.+.. +.+.....|+..+.++..... ++.|..++... -...+|.+...++.+|++. ....+.++|-
T Consensus 487 ls~~l~~vi~~~it~~sLdll~~~~we~l~~~s~~vfle~l~e~V~~~tvtsisPvl~~sL~dy~~e~--~l~~ie~lIv 564 (1206)
T KOG2079|consen 487 LSRLLPTVISKLITERSLDLLREQDWEGLFNMSMSVFLEHLHEVVLLKTVTSISPVLAPSLADYLLEE--ELKYIENLIV 564 (1206)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHhHHHhhcchhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHhc--CHHHHHhhee
Confidence 121111 112224456555444432221 44455555443 2346788888888888875 4788999999
Q ss_pred cCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHH-HhcCCHHHHHHHHHHc-c----Cc-------chhhH------
Q 003625 516 SWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELY-VIDGHYEKAFSLYADL-M----KP-------YIFDF------ 576 (807)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly-~~~~~~~~al~~~~~~-~----~~-------~~~~~------ 576 (807)
..++..-|+..+...+++.. +++.++++. ...++|..+|.-++-. + .+ -+|.|
T Consensus 565 ~le~~sLDld~vlki~kq~~--------lfd~liYv~~kafNDY~tplvell~~~~~difs~sEq~~gn~~f~yvs~cLT 636 (1206)
T KOG2079|consen 565 TLEPSSLDLDVVLKICKQYN--------LFDGLIYVNNKAFNDYDTPLVELLSRISNDIFSPSEQRLGNTIFVYVSYCLT 636 (1206)
T ss_pred ecCcccccHHHHHHHHHHhC--------CcceEEEEeeehhcccccHHHHHHHHhhccccCCccccCCceEEEeeehhhc
Confidence 99999999999999999877 555444432 3445666666555541 0 00 01111
Q ss_pred ----------hhhcc-----c---------------hHHHHHHHHHHHhcChhHHHHHhhh---------cCCCCChHHH
Q 003625 577 ----------IENHN-----L---------------HDAIREKVVQLMLLDCKRAVSLLIQ---------NKDLITPSEV 617 (807)
Q Consensus 577 ----------i~~~~-----~---------------~~~~~~~~~~l~~~~~~~~~~ll~~---------~~~~~~~~~v 617 (807)
+++.+ + .+.-+.|...|++.||.+++..+-. ..+......+
T Consensus 637 G~~YP~~~~~ie~~~~V~~el~r~cfS~v~~k~~~e~e~~fPYlrllLk~d~~~flnvls~afd~~~Fsldn~lv~rq~i 716 (1206)
T KOG2079|consen 637 GRFYPFGLHPIEEQGSVSHELLRNCFSSVTTKGNPEEEPAFPYLRLLLKSDPSRFLNVLSEAFDASLFSLDNELVSRQYI 716 (1206)
T ss_pred ccccccccCchHhhchhhHHHHHHHhhcCCcCCCCccCcccHHHHHHHhhCHHHHHHHHHHHhhhhhhccchhhhhHHHH
Confidence 11111 1 1112367888999999998877654 1123445677
Q ss_pred HHHHhcccccCch-hhHHHHHHHHHHhhCCC----CChhHHHHHHHHHHH---hchH----HHHHHhhcCCCCCHHHHHH
Q 003625 618 VTQLLNARDKCDS-RYFLHLYLHALFEVNPH----AGKDFHDMQVELYAD---YDLK----MLLPFLRSSQHYTLEKAYE 685 (807)
Q Consensus 618 i~~l~~~~~~~~~-~~~~~~yLe~l~~~~~~----~~~~~~~~l~~ly~~---~~~~----kl~~fL~~~~~y~~~~al~ 685 (807)
|..|.......+. ....+.|.-..+.+.+. ....+....+-+-.. -.|+ .+...|---...+-++-|.
T Consensus 717 I~~L~~~mk~e~s~~~~~lifiaq~~s~yrqli~~s~shlq~~vitlcss~~hs~rEn~~~alesll~lyh~~~de~~il 796 (1206)
T KOG2079|consen 717 IDLLLDAMKDEGSIRVLVLIFIAQSISKYRQLIKVSNSHLQCVVITLCSSRVHSIRENSQIALESLLPLYHSRTDENFIL 796 (1206)
T ss_pred HHHHHHHhcccccchhhhHHHHHHHhhhhhHHhhhhHHHHHHHHHhhccCcccchhHHHHHHHHhhccceeccChHHHHH
Confidence 7777653322122 22222333333322221 011122222222110 1122 2333332234456777799
Q ss_pred HHhcCCchhHHHHHHhhcCChHHHHHHHHH
Q 003625 686 ICVKRDLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 686 ~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
.|++.+++.-.-|||.|.|+|+.|+..|+.
T Consensus 797 ~a~~~~~y~Vl~hi~~k~~kyed~l~~iLe 826 (1206)
T KOG2079|consen 797 EAKEKNFYKVLFHIYKKENKYEDALSLILE 826 (1206)
T ss_pred HhhhcccceeHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999998
No 313
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.0053 Score=67.36 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=58.9
Q ss_pred CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc----------------eeEEecCC-ceEEEEeCCCCCCcCCCEEE
Q 003625 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE----------------KMKFDYHR-PMKAISLDPDYTRKMSRRFV 154 (807)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~----------------~~~~~~~~-~v~~v~~~p~~~~~~~~~l~ 154 (807)
......|++|+....++++||.||.+++.-+.+.. -.++.+|+ .|.-+.|+.+ .+.+-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-----~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-----NQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-----ccccc
Confidence 34568899999999999999999999998766411 12467888 9999999988 68899
Q ss_pred EecCCCeEEEEEc
Q 003625 155 AGGLAGHLYLNSK 167 (807)
Q Consensus 155 ~g~~dg~v~l~~~ 167 (807)
+++.+|.|.+|-.
T Consensus 88 tSDt~GlIiVWml 100 (1189)
T KOG2041|consen 88 TSDTSGLIIVWML 100 (1189)
T ss_pred ccCCCceEEEEee
Confidence 9999999999953
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.39 E-value=0.074 Score=54.24 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=106.7
Q ss_pred EEEe-cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEc-CCCCEEEEEeCCCcEEEEeccCCceeEE-e---c
Q 003625 59 CVAV-AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFD-VDGEYVGSCSDDGSVVINSLFTDEKMKF-D---Y 132 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s-~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~---~ 132 (807)
+|.+ ++.++++....|.|+.|+..+.....+.... ...+.+. ++|.+ +.+..+ .+.++|..++++..+ . .
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEEEETT
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEeeccCC
Confidence 5776 6777777778999999999877665544443 5667777 66554 444444 455559888766532 1 2
Q ss_pred --CC-ceEEEEeCCCCCCcCCCEEEEecCC--------CeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--
Q 003625 133 --HR-PMKAISLDPDYTRKMSRRFVAGGLA--------GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-- 197 (807)
Q Consensus 133 --~~-~v~~v~~~p~~~~~~~~~l~~g~~d--------g~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-- 197 (807)
.. ..+.++++|+ |+..++.... |.+..++.. .....+...-...++++|+ ++.+..+
T Consensus 82 ~~~~~~~ND~~vd~~-----G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPD-----GNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp CSCTEEEEEEEE-TT-----S-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred CcccCCCceEEEcCC-----CCEEEEecCCCccccccccceEEECCC---CeEEEEecCcccccceEECCcchheeeccc
Confidence 22 8899999999 7877776544 445554442 2333333344557899999 5655544
Q ss_pred eCCcEEEEEcCCCce-E---Ee-eeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEe
Q 003625 198 NDAGVKVYDAANDQR-I---TF-IERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIK 254 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~-~---~~-i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~ 254 (807)
..+.|..|++..... + .. +..+... ..+..++.. ++.+.++. ..+.|.+++..
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 467788888863222 1 11 1222111 124456665 45544444 56778887754
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0013 Score=68.43 Aligned_cols=203 Identities=15% Similarity=0.090 Sum_probs=127.5
Q ss_pred CceEE-EEecCCEEEEEecCCeEEEEecCC----CeeEEecCCCcceeEEEEcCCCCEEEEEeC-CCcEEEEeccCCcee
Q 003625 55 DAASC-VAVAERMIALGTHAGTVHILDFLG----NQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFTDEKM 128 (807)
Q Consensus 55 ~~i~~-~s~~~~~la~gs~dg~I~i~d~~~----~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~~~~~ 128 (807)
+.|+- +....+++.+++.||.++.|.... ..+..+.+|-+.|.+++.+.+|..+.|++. |..++++|+.+-...
T Consensus 10 d~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi 89 (558)
T KOG0882|consen 10 DVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI 89 (558)
T ss_pred ceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh
Confidence 33444 444678999999999999998854 225667789999999999999999999887 999999999874433
Q ss_pred E-EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee-cCCcCeEEEEEe--CCEEEEE-eCCcEE
Q 003625 129 K-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH-SGEGPVHVVKWR--TSLIAWA-NDAGVK 203 (807)
Q Consensus 129 ~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~-~~~~~V~~l~~~--~~~la~~-~d~~v~ 203 (807)
. ++..-....+.|...-...-+..-++...+|.+.++|..-+......+. -|..+|.++.+. +..+.+. ..|.|.
T Consensus 90 nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVE 169 (558)
T KOG0882|consen 90 NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVE 169 (558)
T ss_pred hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeE
Confidence 2 2211122223332220000013334445678899998875554444443 488999999998 5555555 578899
Q ss_pred EEEcCC------CceEEeeeCCC---CCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 204 VYDAAN------DQRITFIERPR---GSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 204 iwd~~~------~~~~~~i~~~~---~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
-|.... +......+... +.+.......++.++ ++..+.+- .|-.|+++.++++.
T Consensus 170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 998763 11111111110 011222335566665 45444443 77789999998876
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.36 E-value=0.017 Score=67.69 Aligned_cols=189 Identities=15% Similarity=0.215 Sum_probs=116.6
Q ss_pred ceEEEEe--cCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc----C-----
Q 003625 56 AASCVAV--AERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF----T----- 124 (807)
Q Consensus 56 ~i~~~s~--~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~----~----- 124 (807)
.|.++.. +++-+++++..|.|.+-|...........-...|.+++||||++.++-.+.++++.+-+-. .
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~ 149 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD 149 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc
Confidence 3556544 7889999999999999988665554444466789999999999999988888877664321 0
Q ss_pred ------Ccee---------EEec----------------------CCceEEEEeCCCCCCcCCCEEEE-----ecCCCeE
Q 003625 125 ------DEKM---------KFDY----------------------HRPMKAISLDPDYTRKMSRRFVA-----GGLAGHL 162 (807)
Q Consensus 125 ------~~~~---------~~~~----------------------~~~v~~v~~~p~~~~~~~~~l~~-----g~~dg~v 162 (807)
++.. .+.+ +..=++|.|.-+ |.+|++ ......+
T Consensus 150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD-----g~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD-----GEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC-----CcEEEEEEEeccCCceeE
Confidence 0000 1110 001124788777 888888 3444689
Q ss_pred EEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE----eCCcEEEEEcCCCceE-EeeeCCCCCCCCCCCCCeeeee
Q 003625 163 YLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA----NDAGVKVYDAANDQRI-TFIERPRGSPRPELLLPHLVWQ 235 (807)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~----~d~~v~iwd~~~~~~~-~~i~~~~~~~~~~~~~~~l~~~ 235 (807)
++|+.. |....+-....+.-.+++|. |.++++- +|+.|.+|.-..-+.- ..++.|.. ...+..++|+
T Consensus 225 rV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d----e~~ve~L~Wn 298 (1265)
T KOG1920|consen 225 RVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD----EKEVEELAWN 298 (1265)
T ss_pred EEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc----ccchheeeec
Confidence 999875 21111111223344578887 6777764 4667888885432211 12222221 1226789996
Q ss_pred -CCCEEEE---E-eCCcEEEEEEee
Q 003625 236 -DDTLLVI---G-WGTYIKIASIKT 255 (807)
Q Consensus 236 -~~~~l~~---g-~d~~i~vw~~~~ 255 (807)
++..|++ . ....|++|-+..
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecC
Confidence 6777776 3 444599997653
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.36 E-value=0.021 Score=62.46 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=106.8
Q ss_pred ecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceEEE
Q 003625 62 VAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAI 139 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v 139 (807)
..+..+++++.+|.+..+|. +|+.+...........+... ++..++.++.+|.+..+|..++++. .......+.+
T Consensus 63 v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~- 139 (377)
T TIGR03300 63 VAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS- 139 (377)
T ss_pred EECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec-
Confidence 35778889999999999997 67766555443322222222 4677888889999999999888765 3332222221
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCe-----EEEEEeCCEEEEE-eCCcEEEEEcCCCceE
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV-----HVVKWRTSLIAWA-NDAGVKVYDAANDQRI 213 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V-----~~l~~~~~~la~~-~d~~v~iwd~~~~~~~ 213 (807)
+|-. .+..++.++.+|.+..++.. ++...-........+ .+....+..+..+ .++.+..+|..+++.+
T Consensus 140 --~p~v---~~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 140 --PPLV---ANGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred --CCEE---ECCEEEEECCCCeEEEEEcC-CCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 1211 03567777888999988864 343322222111110 1112223344444 6789999999988765
Q ss_pred EeeeCCCCCCCC-----CCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 214 TFIERPRGSPRP-----ELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 214 ~~i~~~~~~~~~-----~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
-........... ..........++..++++.+|.++.|+..++.
T Consensus 214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc
Confidence 432221100000 00111122235555555589999999987664
No 318
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.33 E-value=0.06 Score=54.90 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=97.4
Q ss_pred cCCEEEEEecCCeEEEEecCCCeeEEecC------CCcceeEEEEcCCCCEEEEEeCC--------CcEEEEeccCCcee
Q 003625 63 AERMIALGTHAGTVHILDFLGNQVKEFPA------HTAAVNDLSFDVDGEYVGSCSDD--------GSVVINSLFTDEKM 128 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~~~~~~~------h~~~V~~l~~s~~g~~l~s~~~D--------g~v~iwd~~~~~~~ 128 (807)
.+..++++...+. .++|.....+..+.. .....++++++|+|+..++.... |.+..++.. +++.
T Consensus 50 ~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 50 PDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp TTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE
T ss_pred cCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE
Confidence 3455556665554 555876544332211 34578899999999987776644 456666666 5554
Q ss_pred EEe-cCCceEEEEeCCCCCCcCCCEE-EEecCCCeEEEEEcccCCc---cceEe-e--cCCcCeEEEEEe--CCEEEEE-
Q 003625 129 KFD-YHRPMKAISLDPDYTRKMSRRF-VAGGLAGHLYLNSKKWLGY---RDQVL-H--SGEGPVHVVKWR--TSLIAWA- 197 (807)
Q Consensus 129 ~~~-~~~~v~~v~~~p~~~~~~~~~l-~~g~~dg~v~l~~~~~~~~---~~~~~-~--~~~~~V~~l~~~--~~~la~~- 197 (807)
... .-...+.++|+|+ ++.+ ++-+..+.|..++..-.+. ....+ . ...+..-+++++ |++.++.
T Consensus 128 ~~~~~~~~pNGi~~s~d-----g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 128 VVADGLGFPNGIAFSPD-----GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEESSEEEEEEETT-----SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred EEecCcccccceEECCc-----chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 432 2237789999999 6654 5667777787776642232 11222 2 222347788998 7776666
Q ss_pred eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee
Q 003625 198 NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ 235 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 235 (807)
..+.|.+++.. ++.+..+..+.. .+.+++|.
T Consensus 203 ~~~~I~~~~p~-G~~~~~i~~p~~------~~t~~~fg 233 (246)
T PF08450_consen 203 GGGRIVVFDPD-GKLLREIELPVP------RPTNCAFG 233 (246)
T ss_dssp TTTEEEEEETT-SCEEEEEE-SSS------SEEEEEEE
T ss_pred CCCEEEEECCC-ccEEEEEcCCCC------CEEEEEEE
Confidence 68899999987 888887776621 35667773
No 319
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00065 Score=73.77 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=73.6
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCccee-EEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEe--c
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD--Y 132 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~--~ 132 (807)
..-|+|.-..||+++.+|.|.+...+...+.++.-|...++ +++|.|||+.+|.|-.||+|++-|+.++... ... .
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~ 104 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSV 104 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccccc
Confidence 44699999999999999999999998888888887877777 9999999999999999999999999985543 322 2
Q ss_pred CCceEEEEeCCC
Q 003625 133 HRPMKAISLDPD 144 (807)
Q Consensus 133 ~~~v~~v~~~p~ 144 (807)
..+|.++-|+|.
T Consensus 105 e~~is~~~w~~~ 116 (665)
T KOG4640|consen 105 ETDISKGIWDRI 116 (665)
T ss_pred ccchheeecccc
Confidence 228888888654
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.27 E-value=0.035 Score=55.21 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=67.9
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCeeEEecC-------CCcceeEEEEcCCC------CEEEEEeCCCcEEEEecc
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPA-------HTAAVNDLSFDVDG------EYVGSCSDDGSVVINSLF 123 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~-------h~~~V~~l~~s~~g------~~l~s~~~Dg~v~iwd~~ 123 (807)
-.+|+|++.+||.+.+.|+|++||+.|..+..+.. -..+|..+.|-+.. ..|+....+|.++-+-+.
T Consensus 48 kl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs 127 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVS 127 (282)
T ss_pred EEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEE
Confidence 35899999999999999999999998776544433 22466777665421 236666778887766653
Q ss_pred C------CceeEEec---CC-ceEEEEeCCCCCCcCCCEEEEecCC
Q 003625 124 T------DEKMKFDY---HR-PMKAISLDPDYTRKMSRRFVAGGLA 159 (807)
Q Consensus 124 ~------~~~~~~~~---~~-~v~~v~~~p~~~~~~~~~l~~g~~d 159 (807)
. .+...+.. .. .|.++.++|. .+.+++||..
T Consensus 128 ~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-----h~LLlVgG~~ 168 (282)
T PF15492_consen 128 VGTNQGYQENHSFSFSSHYPHGINSAVYHPK-----HRLLLVGGCE 168 (282)
T ss_pred cccCCcceeeEEEEecccCCCceeEEEEcCC-----CCEEEEeccC
Confidence 2 12333322 23 8999999999 6777777653
No 321
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0021 Score=74.66 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHhchHHHHHHhhcCC-CCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCC----------
Q 003625 651 DFHDMQVELYADYDLKMLLPFLRSSQ-HYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGD---------- 719 (807)
Q Consensus 651 ~~~~~l~~ly~~~~~~kl~~fL~~~~-~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d---------- 719 (807)
.+=++|..+|++.++.-+.++|+..+ +.+++.+=....+.+.+.+.+.||..-|+|++||+++.+....
T Consensus 464 ~IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~ 543 (877)
T KOG2063|consen 464 LIDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLD 543 (877)
T ss_pred HHHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhh
Confidence 46788999999999999999999976 7899999999999999999999999999999999999986441
Q ss_pred -HHHHHHHHhhcCCh--hHHHHHHHHhc-CCchHHHHHHHh----hcCCCCHHHHHhhCCCCCccccHHHHHHHHHhhhh
Q 003625 720 -IEEAVEFVNMQHDD--ELWEELIKQCL-NKPEMVGVLLEH----TVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYR 791 (807)
Q Consensus 720 -~~~A~~~~~~~~~~--~lw~~ll~~~~-~~~~~~~~lL~~----~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~~~~ 791 (807)
++..++|-++..++ +|.....+..+ +.|+.+..++.. ..+.+++.+|++.|+..-+ ..+-+||+.++-++.
T Consensus 544 ~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~-~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 544 GLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEP-KLLIPYLEHLISDNR 622 (877)
T ss_pred hHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCc-chhHHHHHHHhHhcc
Confidence 56678888887766 66666666666 567777777765 4567999999998874432 234578888888777
Q ss_pred HHHHHHHHH
Q 003625 792 TETSLRHGC 800 (807)
Q Consensus 792 ~~~~~~~~~ 800 (807)
.+-....+|
T Consensus 623 ~~~~~lht~ 631 (877)
T KOG2063|consen 623 LTSTLLHTV 631 (877)
T ss_pred ccchHHHHH
Confidence 755554444
No 322
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.24 E-value=0.25 Score=52.50 Aligned_cols=142 Identities=13% Similarity=0.032 Sum_probs=81.4
Q ss_pred EEecCCEEEEEec----------CCeEEEEecC-CCeeEEecCC-------CcceeEEEEcCCCCEEEEEe-C-CCcEEE
Q 003625 60 VAVAERMIALGTH----------AGTVHILDFL-GNQVKEFPAH-------TAAVNDLSFDVDGEYVGSCS-D-DGSVVI 119 (807)
Q Consensus 60 ~s~~~~~la~gs~----------dg~I~i~d~~-~~~~~~~~~h-------~~~V~~l~~s~~g~~l~s~~-~-Dg~v~i 119 (807)
++|+|+.+.++.. +..|.+||.. .+.+..+..- ...-..++++|||+++.... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8899998877755 7899999994 5556555431 11234678999999988766 3 688999
Q ss_pred EeccCCceeE-EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc----cceEeecC-----CcCeEEEEE
Q 003625 120 NSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY----RDQVLHSG-----EGPVHVVKW 189 (807)
Q Consensus 120 wd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~----~~~~~~~~-----~~~V~~l~~ 189 (807)
.|+.++++.. +.......-...++. +.. +-+.||........-.+. ...++... ..+ ....
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~-----~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~ 203 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTAND-----TFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSN 203 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCC-----ccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEc
Confidence 9999987654 444332222333332 122 223344433322221121 11122221 122 1122
Q ss_pred -eCCEEEEEeCCcEEEEEcCCC
Q 003625 190 -RTSLIAWANDAGVKVYDAAND 210 (807)
Q Consensus 190 -~~~~la~~~d~~v~iwd~~~~ 210 (807)
.|..+..+..|.|.+.|+...
T Consensus 204 ~dg~~~~vs~eG~V~~id~~~~ 225 (352)
T TIGR02658 204 KSGRLVWPTYTGKIFQIDLSSG 225 (352)
T ss_pred CCCcEEEEecCCeEEEEecCCC
Confidence 267777776799999996543
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.24 E-value=0.018 Score=66.80 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=91.1
Q ss_pred CCEEEEE-eCCCcEEEEeccCCcee-EEecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec-
Q 003625 105 GEYVGSC-SDDGSVVINSLFTDEKM-KFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS- 179 (807)
Q Consensus 105 g~~l~s~-~~Dg~v~iwd~~~~~~~-~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~- 179 (807)
.+.|+.- .....++-.|+..|++. .+..+. +|..++=...++...+....+|-.+..+..||.+..+.+...-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 35578999999999887 477776 566654433333223445667777778989998866533221111
Q ss_pred ---CCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEE
Q 003625 180 ---GEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASI 253 (807)
Q Consensus 180 ---~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~ 253 (807)
....-+|++-+ |.+++++.+|.||+||-- +....+ ..++.+..+..+.-+ +|+++++..+..+-+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT-----~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKT-----ALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhh-----cCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 23345666666 666666689999999943 322222 122333445566654 889998889999999987
Q ss_pred ee
Q 003625 254 KT 255 (807)
Q Consensus 254 ~~ 255 (807)
.-
T Consensus 647 ~~ 648 (794)
T PF08553_consen 647 LI 648 (794)
T ss_pred ee
Confidence 53
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.0012 Score=73.55 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred eEEEEecCCEEEEEe----cCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE-e
Q 003625 57 ASCVAVAERMIALGT----HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF-D 131 (807)
Q Consensus 57 i~~~s~~~~~la~gs----~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~-~ 131 (807)
+++|+|...++|+++ ..|.|.||--+|.+-+... ..-.++++||+|..-.|++|-.-|.+.+|...+.+..+. .
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 578999999998875 4689999977776532221 122357799999988899999999999999988777764 4
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.|. +|..+.|+|+ |..++++..-|.|.+|...
T Consensus 99 th~a~i~~l~wS~~-----G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHD-----GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCC-----CCeEEEcCCCceeEEEEee
Confidence 455 9999999999 9999999999999999754
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.22 E-value=0.096 Score=53.68 Aligned_cols=212 Identities=15% Similarity=0.161 Sum_probs=114.9
Q ss_pred EEEe-cCCEEEEEecCCe-EEEEecC-CCeeEEecCCCcce--eEEEEcCCCCEEEEEeCC-----CcEEEEeccC--Cc
Q 003625 59 CVAV-AERMIALGTHAGT-VHILDFL-GNQVKEFPAHTAAV--NDLSFDVDGEYVGSCSDD-----GSVVINSLFT--DE 126 (807)
Q Consensus 59 ~~s~-~~~~la~gs~dg~-I~i~d~~-~~~~~~~~~h~~~V--~~l~~s~~g~~l~s~~~D-----g~v~iwd~~~--~~ 126 (807)
+.+| .+..++++-.-|+ ..+||.. +.....+....+.- -.-.||+||++|.+.-.| |.|-|||... .+
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~r 90 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRR 90 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEE
Confidence 5566 4556777766554 4578884 44444443322211 134699999999987554 7899999984 33
Q ss_pred eeEEecCC-ceEEEEeCCCCCCcCCCEEEEecC-------CCeEEEEEcccCCccceEeec---------------CCcC
Q 003625 127 KMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL-------AGHLYLNSKKWLGYRDQVLHS---------------GEGP 183 (807)
Q Consensus 127 ~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-------dg~v~l~~~~~~~~~~~~~~~---------------~~~~ 183 (807)
+-.+..+. ....+.+.|+ ++.++++.. .|..++. ...+......+.. |.-.
T Consensus 91 i~E~~s~GIGPHel~l~pD-----G~tLvVANGGI~Thpd~GR~kLN-l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPD-----GETLVVANGGIETHPDSGRAKLN-LDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred EeEecCCCcChhhEEEcCC-----CCEEEEEcCCCccCcccCceecC-hhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 44576666 7788889999 767666532 1222221 1001111122212 3344
Q ss_pred eEEEEEe--CCEEEEEe-CCc-------EEEEEcCCCceEEeeeCCCC-CCCCCCCCCeeeee-CCCEEE-EE-eCCcEE
Q 003625 184 VHVVKWR--TSLIAWAN-DAG-------VKVYDAANDQRITFIERPRG-SPRPELLLPHLVWQ-DDTLLV-IG-WGTYIK 249 (807)
Q Consensus 184 V~~l~~~--~~~la~~~-d~~-------v~iwd~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~-~~~~l~-~g-~d~~i~ 249 (807)
|.-++++ |..+.... .+- |-+++ .+..+..+..+.. ......|+.+++++ ++..++ ++ ..+++.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 5555555 33333331 111 22222 2222222222221 12344577888886 445554 44 899999
Q ss_pred EEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCceE
Q 003625 250 IASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLV 296 (807)
Q Consensus 250 vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~ 296 (807)
+||..++...... .. .-+||+++..+.++
T Consensus 243 ~~d~~tg~~~~~~-----------------~l-~D~cGva~~~~~f~ 271 (305)
T PF07433_consen 243 VWDAATGRLLGSV-----------------PL-PDACGVAPTDDGFL 271 (305)
T ss_pred EEECCCCCEeecc-----------------cc-CceeeeeecCCceE
Confidence 9998877622111 00 23689999887733
No 326
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.06 Score=55.21 Aligned_cols=176 Identities=12% Similarity=0.156 Sum_probs=110.8
Q ss_pred CCeEEEEecCCCe----eEEecCCCcceeEEEEcCCCCEEEEEeCC---CcEEEEeccC--CceeEEe---cCC-ceEEE
Q 003625 73 AGTVHILDFLGNQ----VKEFPAHTAAVNDLSFDVDGEYVGSCSDD---GSVVINSLFT--DEKMKFD---YHR-PMKAI 139 (807)
Q Consensus 73 dg~I~i~d~~~~~----~~~~~~h~~~V~~l~~s~~g~~l~s~~~D---g~v~iwd~~~--~~~~~~~---~~~-~v~~v 139 (807)
++-|++|++++.. ....-.+.+..+-++|+|++++|.++..+ |.|..|.++. |....+. ... +.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4679999985322 23334567778889999999998887654 6677776654 6655432 222 55889
Q ss_pred EeCCCCCCcCCCEEEEec-CCCeEEEEEcccCCccceE--eecCCcC----------eEEEEEe--CCEEEEE--eCCcE
Q 003625 140 SLDPDYTRKMSRRFVAGG-LAGHLYLNSKKWLGYRDQV--LHSGEGP----------VHVVKWR--TSLIAWA--NDAGV 202 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~-~dg~v~l~~~~~~~~~~~~--~~~~~~~----------V~~l~~~--~~~la~~--~d~~v 202 (807)
+++++ +++++++. ..|.|.++-..-+|..... ...|.++ +....+. ++++++. ....|
T Consensus 95 svd~~-----g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 95 SVDED-----GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EECCC-----CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 99999 77766664 4567888876544532222 2224433 7777777 6777776 46679
Q ss_pred EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE--eCCcEEEEEEeeC
Q 003625 203 KVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG--WGTYIKIASIKTN 256 (807)
Q Consensus 203 ~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g--~d~~i~vw~~~~~ 256 (807)
.+|++..+.....-... .....-+..+.|. ++++..+- -+++|-+|.....
T Consensus 170 ~~y~~~dg~L~~~~~~~---v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 170 FLYDLDDGKLTPADPAE---VKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEcccCccccccccc---cCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99999866543311110 1112234467775 44443333 6899999998874
No 327
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.21 E-value=0.32 Score=59.77 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=88.0
Q ss_pred hHHHHHHhcccHHHHHHHHHhcCCCch--hHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCC
Q 003625 398 DHIAWLLEHGWHEKALAAVEAGQGRSE--LLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLP 475 (807)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~~--~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~ 475 (807)
+.+.-|.+.|++++|+.+.+......- --..+...++..+...+..++|..++......+...|..++..+...+.++
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH
Confidence 445667788999999999765432110 001123334455556677888887766554445556666777666666543
Q ss_pred ccccc---CcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 003625 476 VLVPY---MPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELY 552 (807)
Q Consensus 476 ~L~~y---l~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly 552 (807)
.-... +.......+..+|+.++..|.+.. +.+.-.+++.. +.+.. -..+...+..++.-|
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~e--------------M~~~G--v~PdvvTynaLI~gy 517 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHE--------------MVNAG--VEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHH--------------HHHcC--CCCCHHHHHHHHHHH
Confidence 32221 112222335677888887777653 33322222211 11110 112344677788888
Q ss_pred HhcCCHHHHHHHHHHcc
Q 003625 553 VIDGHYEKAFSLYADLM 569 (807)
Q Consensus 553 ~~~~~~~~al~~~~~~~ 569 (807)
.+.|++++|+.++-++.
T Consensus 518 ~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHCcCHHHHHHHHHHHH
Confidence 88888888888877664
No 328
>PLN03077 Protein ECB2; Provisional
Probab=97.20 E-value=0.17 Score=62.02 Aligned_cols=292 Identities=11% Similarity=0.045 Sum_probs=142.9
Q ss_pred CChhhHHHHHHhcccHHHHHHHHHhcCC---Cch--hHhHHHHHHHHHHhCcccHHHHHhHhhHhhc----cChhhHHHH
Q 003625 394 RDAEDHIAWLLEHGWHEKALAAVEAGQG---RSE--LLDEVGSRYLDHLIVERKYAEAASLCPKLLR----GSASAWERW 464 (807)
Q Consensus 394 ~~~~d~i~~ll~~~~~~~Al~~~~~~~~---~~~--~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~----~~~~~we~~ 464 (807)
.+|..-|..+.+.|++++|+.+.+.... .++ ....+ +..+-..++.+.|.++...... .+...|..+
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l----l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV----ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH----HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 3578888999999999999988754321 121 11122 2222234445555444333221 122333444
Q ss_pred HHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhc-----CCcCCCChHHHHHHHHH------
Q 003625 465 VFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKS-----WPPVIYSALPVISAIEP------ 533 (807)
Q Consensus 465 i~~F~~~~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~-----~~~~l~~~~~~~~~~~~------ 533 (807)
|.-+...+.++.-...+..- +.-+...|+.++..|.+.. +.++-+++++. ..++.+....++.++-.
T Consensus 330 i~~y~k~g~~~~A~~vf~~m-~~~d~~s~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRM-ETKDAVSWTAMISGYEKNG-LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCeeeHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 44444443322211111110 0113345666666666543 33333322221 22333333333332211
Q ss_pred -------hhhc-CCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhccchHHHHHHHHHHHhcChhHHHHHh
Q 003625 534 -------QLNS-SSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLL 605 (807)
Q Consensus 534 -------~~~~-~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ll 605 (807)
-... .......+..|...|.+.|++++|++++-++..+++..+ ..+..- ....-..++++.+|
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~-------~~mi~~--~~~~g~~~eA~~lf 478 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW-------TSIIAG--LRLNNRCFEALIFF 478 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH-------HHHHHH--HHHCCCHHHHHHHH
Confidence 0011 123345778899999999999999999998877654321 111000 01123445666666
Q ss_pred hhcCCCCChHH--HHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHHHHhhcCCCCCHHHH
Q 003625 606 IQNKDLITPSE--VVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKA 683 (807)
Q Consensus 606 ~~~~~~~~~~~--vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~~fL~~~~~y~~~~a 683 (807)
-+....+.|+. +...|..+... ............++...-..+....|.|+.+|++.-+ +++|
T Consensus 479 ~~m~~~~~pd~~t~~~lL~a~~~~-g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~--------------~~~A 543 (857)
T PLN03077 479 RQMLLTLKPNSVTLIAALSACARI-GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR--------------MNYA 543 (857)
T ss_pred HHHHhCCCCCHhHHHHHHHHHhhh-chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC--------------HHHH
Confidence 55333344442 22222221111 1122222334444555555566678899999987431 2222
Q ss_pred HHHHh----cCCchhHHHHHHhhcCChHHHHHHHHH
Q 003625 684 YEICV----KRDLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 684 l~~~~----~~~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
+++.. ..--|..++--|++.|+.++|+.++=+
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22221 223466777888888888888887753
No 329
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.20 E-value=0.027 Score=61.62 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=100.7
Q ss_pred CCEEEEEecCCeEEEEec-CCCeeEEecCCC--c-----ceeEEEEcC--CCCEEEEEeCCCcEEEEeccCCceeEEecC
Q 003625 64 ERMIALGTHAGTVHILDF-LGNQVKEFPAHT--A-----AVNDLSFDV--DGEYVGSCSDDGSVVINSLFTDEKMKFDYH 133 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~--~-----~V~~l~~s~--~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~ 133 (807)
+..+++|+.+|.+..+|. +|..+.+..... + .+..+.-+| .+..+..++.+|.++.||..+++..-....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 346778888999999998 565543322110 0 000010011 356788888899999999988775432111
Q ss_pred CceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec-CCcCeEEEEEeCCEEEE-EeCCcEEEEEcCCCc
Q 003625 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS-GEGPVHVVKWRTSLIAW-ANDAGVKVYDAANDQ 211 (807)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~-~~~~V~~l~~~~~~la~-~~d~~v~iwd~~~~~ 211 (807)
......+. . +..+++++.+|.+..++.. ++........ ......+....+..+.. +.+|.+.++|..+++
T Consensus 270 ~~~~~p~~--~-----~~~vyv~~~~G~l~~~d~~-tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 270 SSYQGPAV--D-----DNRLYVTDADGVVVALDRR-SGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CCccCceE--e-----CCEEEEECCCCeEEEEECC-CCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 11111122 2 4567778889999988764 3332211111 11122222334545544 479999999999999
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEE
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIA 251 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw 251 (807)
.+..++.+... ...+....++.+++.+.||.|+.+
T Consensus 342 ~~~~~~~~~~~-----~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 FVARLKTDGSG-----IASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEEcCCCc-----cccCCEEECCEEEEEeCCceEEEe
Confidence 88876654321 122233456666666689888765
No 330
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.00032 Score=78.26 Aligned_cols=176 Identities=19% Similarity=0.212 Sum_probs=111.4
Q ss_pred EEEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCC--cEEEEeccC--CceeEEecC
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFT--DEKMKFDYH 133 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~--~~~~~~~~~ 133 (807)
+|+.+.++|++|+..|.|++|++ +|.......+|.++|+.+.=+.+|...++.+... -..+|++.. +...++.
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~-- 1185 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD-- 1185 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc--
Confidence 36667889999999999999999 5666788899999999999999999877765543 467899876 2222332
Q ss_pred CceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceE-eec---CCcCeEEEEEeC--CEEEEEeCCcEEEEEc
Q 003625 134 RPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQV-LHS---GEGPVHVVKWRT--SLIAWANDAGVKVYDA 207 (807)
Q Consensus 134 ~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~-~~~---~~~~V~~l~~~~--~~la~~~d~~v~iwd~ 207 (807)
.-.++.|+.. ...-+.|+......+||.. ++.+..+ +.+ .+-.-++..|++ .++. +|| .+||+
T Consensus 1186 -ed~~vkFsn~-----~q~r~~gt~~d~a~~YDvq-T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDv 1254 (1516)
T KOG1832|consen 1186 -EDKAVKFSNS-----LQFRALGTEADDALLYDVQ-TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDV 1254 (1516)
T ss_pred -ccceeehhhh-----HHHHHhcccccceEEEecc-cCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeee
Confidence 4567788776 4444555555577888875 3433333 222 112225666773 3433 344 47999
Q ss_pred CCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 208 ANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
+..+.+..+..-. ....+.+.+ .|.-+++.. .|||+++..
T Consensus 1255 R~~~aIh~FD~ft-~~~~G~FHP-----~g~eVIINS----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFT-DYGGGGFHP-----SGNEVIINS----EIWDMRTFK 1294 (1516)
T ss_pred ccHHHHhhhhhhe-ecccccccC-----CCceEEeec----hhhhhHHHH
Confidence 9877666554432 111111222 344444433 388888765
No 331
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.19 E-value=0.0021 Score=63.61 Aligned_cols=125 Identities=20% Similarity=0.253 Sum_probs=87.8
Q ss_pred cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--Cc--eeEEecCC------ceEEEEeCCCCCCcCCCEEEEecCC
Q 003625 90 PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DE--KMKFDYHR------PMKAISLDPDYTRKMSRRFVAGGLA 159 (807)
Q Consensus 90 ~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~--~~~~~~~~------~v~~v~~~p~~~~~~~~~l~~g~~d 159 (807)
.+|.-.|++++|+.|...++++ +|-.|.+|++.. +. +.-++.+. .|++..|+|. ....|..++..
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~----~cn~fmYSsSk 243 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE----MCNVFMYSSSK 243 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh----HcceEEEecCC
Confidence 3577788999999999888876 567899999875 22 22233333 5788899997 36788888999
Q ss_pred CeEEEEEcccCC---ccceEe------------ecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCC-CceEEeeeCC
Q 003625 160 GHLYLNSKKWLG---YRDQVL------------HSGEGPVHVVKWR--TSLIAWANDAGVKVYDAAN-DQRITFIERP 219 (807)
Q Consensus 160 g~v~l~~~~~~~---~~~~~~------------~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~-~~~~~~i~~~ 219 (807)
|.|++.|.+... .+.+.+ .+-...|..+.|+ |+++++-.-.+|+|||++. ..++.+++.+
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechH
Confidence 999998876221 111111 1112567788898 7899888888999999985 4566666444
No 332
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.028 Score=60.21 Aligned_cols=133 Identities=15% Similarity=0.104 Sum_probs=92.4
Q ss_pred EEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCE-------EEEEeCCCcEEEEeccCC-c--eeEEecCC--
Q 003625 68 ALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEY-------VGSCSDDGSVVINSLFTD-E--KMKFDYHR-- 134 (807)
Q Consensus 68 a~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~-------l~s~~~Dg~v~iwd~~~~-~--~~~~~~~~-- 134 (807)
..|.....++-.|+ .|+.+..++-|.. |+-+.+.|++.. -+.|-.|..|+-||.+-. . +...+++.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 34555556667777 4777788887776 666777776442 234567788999998752 2 22222222
Q ss_pred ---ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcC
Q 003625 135 ---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 135 ---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~ 208 (807)
...|.+-..+ .++|+|+.+|.|++|+.. ..+..+.+++-..+|..|..+ |.++.++.+..+-+.++.
T Consensus 429 ~k~nFsc~aTT~s------G~IvvgS~~GdIRLYdri-~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATTES------GYIVVGSLKGDIRLYDRI-GRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccceeeecCC------ceEEEeecCCcEEeehhh-hhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 5556655544 799999999999999883 345556677777889888776 999988888888888765
No 333
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.13 E-value=0.18 Score=61.92 Aligned_cols=293 Identities=11% Similarity=-0.017 Sum_probs=135.2
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhc----cChhhHHHHHHHHhhcCCCCc
Q 003625 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR----GSASAWERWVFHFAHLRQLPV 476 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~----~~~~~we~~i~~F~~~~~l~~ 476 (807)
..+.+.|.+++|+.+.+....+.. .....-+..+...++++.|.+++..... .+...|..+|.-+...+.++.
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~pd~---~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRNPTL---STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCCCCH---HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 445666777777777665443111 1222233334455666666666554432 133455555666655555333
Q ss_pred cccc---CcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhc-----CCcCCCChHHHHHHH-------------HHhh
Q 003625 477 LVPY---MPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKS-----WPPVIYSALPVISAI-------------EPQL 535 (807)
Q Consensus 477 L~~y---l~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~-----~~~~l~~~~~~~~~~-------------~~~~ 535 (807)
-... +.......+...|..++..|.+.. +.++-.++... ..++.+.-..++..+ ++-.
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2221 121112234556666666665432 33222222111 111111101111111 1000
Q ss_pred ---hcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhccchHHHHHHHHHH-HhcChhHHHHHhhhc-CC
Q 003625 536 ---NSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQL-MLLDCKRAVSLLIQN-KD 610 (807)
Q Consensus 536 ---~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l-~~~~~~~~~~ll~~~-~~ 610 (807)
..-..+...+..+...|.+.|++++|++++-++....+-....- +.. .+..+ ..-+.++++.+|-+. ..
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t---yns---LI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV---YTI---AVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH---HHH---HHHHHHhcCCHHHHHHHHHHHHHc
Confidence 00112334666777777888888888877766544321100000 000 00001 112345666666541 11
Q ss_pred CCChH-----HHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhc-hHHHHHHhhcC--CCCCHHH
Q 003625 611 LITPS-----EVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYD-LKMLLPFLRSS--QHYTLEK 682 (807)
Q Consensus 611 ~~~~~-----~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~-~~kl~~fL~~~--~~y~~~~ 682 (807)
.+.|+ .++..+... +.......+++.+...+...+...++.++..|++.. .++...+++.- ....+
T Consensus 644 Gv~PD~~TynsLI~a~~k~----G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-- 717 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHA----GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-- 717 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Confidence 23333 233333322 234445567777777776667788999999998643 22222222210 01111
Q ss_pred HHHHHhcCCchhHHHHHHhhcCChHHHHHHHHH
Q 003625 683 AYEICVKRDLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 683 al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
....|...+..|++.|+.++|+.++-.
T Consensus 718 ------dvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 718 ------TVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112355667777777777777776653
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.12 Score=56.76 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=50.6
Q ss_pred eEEEEecCCEEEEEecC----------C-eEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 003625 57 ASCVAVAERMIALGTHA----------G-TVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT 124 (807)
Q Consensus 57 i~~~s~~~~~la~gs~d----------g-~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~ 124 (807)
..+.+|.|..||+...+ . .|+||+..|+.+.++.-..+.|.++.|+.+ ..|+....||.++++|+.+
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 34566666666665443 2 599999999998776554489999999875 5566788999999999864
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.10 E-value=0.025 Score=57.23 Aligned_cols=182 Identities=18% Similarity=0.113 Sum_probs=104.9
Q ss_pred EEecCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EE-ecCC--
Q 003625 60 VAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF-DYHR-- 134 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~-~~~~-- 134 (807)
..++++.+++++.++.++.||. +|+.+.++.. .+.+.... ...+..++.++.++.++.+|..+++.. .. ....
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccc
Confidence 3447778888899999999998 6777666654 22222111 224566777778889999998887765 32 2221
Q ss_pred -c-eEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcC----e-------EEEEEe-CCEEEEEeCC
Q 003625 135 -P-MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGP----V-------HVVKWR-TSLIAWANDA 200 (807)
Q Consensus 135 -~-v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~----V-------~~l~~~-~~~la~~~d~ 200 (807)
. ......... +..++++..+|.+..++.. +|...........+ + ..+.+. +.+++++.++
T Consensus 110 ~~~~~~~~~~~~-----~~~~~~~~~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 110 AGVRSSSSPAVD-----GDRLYVGTSSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp CSTB--SEEEEE-----TTEEEEEETCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred cccccccCceEe-----cCEEEEEeccCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 1 111112112 4677777778899888865 45443333332211 1 223333 4344444566
Q ss_pred cEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 201 ~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+..+|..+++.+-... .. . ........+..++++ .++.+..||+++++
T Consensus 184 ~~~~~d~~tg~~~w~~~-~~-~------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP-IS-G------IYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp SEEEEETTTTEEEEEEC-SS--------ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEec-CC-C------ccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 54334999998653221 11 1 222122355666666 69999999998775
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.09 E-value=0.076 Score=55.16 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=93.7
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee---------
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM--------- 128 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~--------- 128 (807)
|....++.|++|+.+| +++++.+ ....... .+..+|..+...++-+.+++-+ ||.++++++..-...
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4445788999999999 8898883 2222222 2333499999999888776665 499999998762111
Q ss_pred -------EEecCCceEEEE-eCCCCCCcCCCEEEEecCCCeEEEEEcccCCccc-eEee--cCCcCeEEEEEeCCEEEEE
Q 003625 129 -------KFDYHRPMKAIS-LDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRD-QVLH--SGEGPVHVVKWRTSLIAWA 197 (807)
Q Consensus 129 -------~~~~~~~v~~v~-~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~-~~~~--~~~~~V~~l~~~~~~la~~ 197 (807)
.+...+.+..++ -... .+...++......+.+|......... ..+. .-...+.++.|.++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~----~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGH----EGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeecccc----ccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEE
Confidence 111112455555 1111 13333444444588887654221111 2222 2357889999999999988
Q ss_pred eCCcEEEEEcCCCceEEee
Q 003625 198 NDAGVKVYDAANDQRITFI 216 (807)
Q Consensus 198 ~d~~v~iwd~~~~~~~~~i 216 (807)
..+...+.|+.++......
T Consensus 155 ~~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 155 TSKGFYLIDLNTGSPSELL 173 (275)
T ss_pred eCCceEEEecCCCCceEEe
Confidence 8888999999977665443
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.07 E-value=0.00019 Score=77.65 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=117.5
Q ss_pred CCEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCC-CCEEEEEeC----CCcEEEEeccCCce-----eEE
Q 003625 64 ERMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVD-GEYVGSCSD----DGSVVINSLFTDEK-----MKF 130 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~-g~~l~s~~~----Dg~v~iwd~~~~~~-----~~~ 130 (807)
...+++|..+|.|-+-...... .....+|....++++|++- .++||.|-+ |..+.|||+.++.. ..+
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 3588999999999998773221 2344668889999999974 456666542 56799999987521 123
Q ss_pred ec-CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEE---EeCCEEEEEeCCcEEEE
Q 003625 131 DY-HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVK---WRTSLIAWANDAGVKVY 205 (807)
Q Consensus 131 ~~-~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~---~~~~~la~~~d~~v~iw 205 (807)
.. .. ...+++|..+ .+.+.+|.....+.+++.+|.......+.. ..+.++. |++.+++...|+.|.+|
T Consensus 150 s~~~l~gqns~cwlrd-----~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~~~nY~cs~~dg~iAiw 222 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRD-----TKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPFSPNYFCSNSDGDIAIW 222 (783)
T ss_pred ccccccCccccccccC-----cchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCCCCCceeccccCceeec
Confidence 33 22 6778888866 788999999889999998876533333221 2233343 45889998899999999
Q ss_pred Ec-CC-CceEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEE-eCCcEEEEEEeeCC
Q 003625 206 DA-AN-DQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 206 d~-~~-~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
|. +. ...+..+....+.. + .....++|. +|...+.. ..++|+.+++..-.
T Consensus 223 D~~rnienpl~~i~~~~N~~-~-~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 223 DTYRNIENPLQIILRNENKK-P-KQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred cchhhhccHHHHHhhCCCCc-c-cceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence 93 22 12222222211110 0 124456664 44444444 56779999987654
No 338
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.012 Score=65.35 Aligned_cols=180 Identities=18% Similarity=0.234 Sum_probs=120.7
Q ss_pred EEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcC---CC-CEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEE
Q 003625 66 MIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDV---DG-EYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKA 138 (807)
Q Consensus 66 ~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~---~g-~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~ 138 (807)
.||++...|.|.+||.. +..+..+..|.++|..++|-+ +. ..++.-.....+.+|+..+|... +..... ...|
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 67888889999999994 444566778889999999975 33 46777777789999999986654 555544 8888
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccC------CccceEeecCCc------------Ce-----------EE--E
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL------GYRDQVLHSGEG------------PV-----------HV--V 187 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~------~~~~~~~~~~~~------------~V-----------~~--l 187 (807)
+.++|- +.+.|..-+..|.+.+.+..-. ++..++-..|.. .+ .+ .
T Consensus 161 f~~DPf----d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 161 FRVDPF----DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred eeeCCC----CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 999996 4677777777788766642111 122222222211 00 01 2
Q ss_pred EEe---CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee---CCCEEEEE-eCCcEEEEEEee
Q 003625 188 KWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 188 ~~~---~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~i~vw~~~~ 255 (807)
+|+ -+.+...-.+.+.++|+.-..++..+..+.+. ...+.|- ....|.+. .+|.+.+|..+.
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~------akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGG------AKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhhceeEEEEeccCC------cceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 333 25556666788999999988888887766543 3334442 34456666 899999997765
No 339
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.04 E-value=0.39 Score=57.26 Aligned_cols=294 Identities=10% Similarity=0.030 Sum_probs=158.1
Q ss_pred ChhhHHHHHHhcccHHHHHHHHHhcCC----CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhc----cChhhHHHHHH
Q 003625 395 DAEDHIAWLLEHGWHEKALAAVEAGQG----RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR----GSASAWERWVF 466 (807)
Q Consensus 395 ~~~d~i~~ll~~~~~~~Al~~~~~~~~----~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~----~~~~~we~~i~ 466 (807)
+|...|.-+.+.|++.+|+.+.+.... ..+ .......+..+...++++.|.++...... .+...|..++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~--~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLP--ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 677889999999999999998764321 111 12333344445555677776666544332 23445566666
Q ss_pred HHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhc-----CCcCCCChHHHHHHHHHh-------
Q 003625 467 HFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKS-----WPPVIYSALPVISAIEPQ------- 534 (807)
Q Consensus 467 ~F~~~~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~-----~~~~l~~~~~~~~~~~~~------- 534 (807)
.+...+.++.-...+..- +.-+...|+.++..|.+.. +.++-+++++. ..++.+....++.++...
T Consensus 167 ~y~k~g~~~~A~~lf~~m-~~~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEM-PERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcC-CCCCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 666666543322222111 1124567888888887653 44443333322 112222222222221110
Q ss_pred -----h-hc-CCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhccchHHHHHHHHHHHhcChhHHHHHhhh
Q 003625 535 -----L-NS-SSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLLIQ 607 (807)
Q Consensus 535 -----~-~~-~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~ 607 (807)
. .. ...+...+..|...|.+.|+.++|.+++-++..+++..+ + ..+.-+ ...-+.++|+++|-+
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~----n--~li~~y---~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW----N--SMLAGY---ALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHH----H--HHHHHH---HhCCCHHHHHHHHHH
Confidence 0 00 112334667899999999999999999988877654322 0 000000 112345667777754
Q ss_pred c-CCCCChH-----HHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhch-HHHHHHhhcCCCCCH
Q 003625 608 N-KDLITPS-----EVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDL-KMLLPFLRSSQHYTL 680 (807)
Q Consensus 608 ~-~~~~~~~-----~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~-~kl~~fL~~~~~y~~ 680 (807)
. ...+.|+ .++..+.+.+ ........++.+.......+....+.|+..|++.-+ +.....++.-..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLA----LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhcc----chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 1 1223332 3333333221 223333455666666655667789999999987432 222222222110
Q ss_pred HHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHH
Q 003625 681 EKAYEICVKRDLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 681 ~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
+...-|..++--|++.|+.++|+.++-.
T Consensus 389 -------~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 389 -------KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred -------CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1223567777788888888888887754
No 340
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.021 Score=61.29 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=109.5
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeC-----------CCcEEEEeccC
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-----------DGSVVINSLFT 124 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-----------Dg~v~iwd~~~ 124 (807)
...|||.|.+|++--..| |.+|--. -..++.+ .|.+ |.-+.|||+.++|+|-|. ...++|||+.+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 557999999998866655 6677642 2224444 4654 778999999999998663 24699999999
Q ss_pred Ccee-EEec--CC-ce-EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC---CcCeEEEEEe--CCEE
Q 003625 125 DEKM-KFDY--HR-PM-KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG---EGPVHVVKWR--TSLI 194 (807)
Q Consensus 125 ~~~~-~~~~--~~-~v-~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~---~~~V~~l~~~--~~~l 194 (807)
|... .+.. .. ++ .-+.||-+ ++++|.-..+ .|.+|+.. +...+... -..|....|+ ++++
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~D-----dKy~Arm~~~-sisIyEtp----sf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHD-----DKYFARMTGN-SISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred cchhcceeccCCCccccceEEeccC-----CceeEEeccc-eEEEEecC----ceeeecccccCCccccCcccCCCcceE
Confidence 8765 3433 22 22 23689988 7888887775 67777643 12222221 2346677788 5666
Q ss_pred EEE---e---CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE
Q 003625 195 AWA---N---DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG 243 (807)
Q Consensus 195 a~~---~---d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g 243 (807)
|.- . -..+.+..+.+++.+++....+ ..-|.+.|. +|.+|++-
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfn------VsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFN------VSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeecccee------eeccEEEeccCCcEEEEE
Confidence 643 1 2347888888888777643332 235788995 77777765
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.0018 Score=43.27 Aligned_cols=38 Identities=34% Similarity=0.654 Sum_probs=33.5
Q ss_pred CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEe
Q 003625 84 NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS 121 (807)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd 121 (807)
.....+..|...|.+++|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566778889999999999999999999999999996
No 342
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.074 Score=57.29 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=75.5
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCCceEEEEeCCCCCCcCCCEEEEecC----------C-CeEEE
Q 003625 97 NDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGL----------A-GHLYL 164 (807)
Q Consensus 97 ~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~----------d-g~v~l 164 (807)
+-+.|||.|.+|+|--.-| |.+|.-.+ +.+.++ .|..|.-+.|||+ .+++++=+. + ..+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-~Hp~Vq~idfSP~-----EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-YHPGVQFIDFSPN-----EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-cCCCceeeecCCc-----cceEEEecCCccccCcccCCCceEEE
Confidence 4578999999998876554 78897655 344444 3557889999999 788888542 2 46899
Q ss_pred EEcccCCccceEeec--CCcCeEE-EEEe--CCEEEEEeCCcEEEEEcCCC
Q 003625 165 NSKKWLGYRDQVLHS--GEGPVHV-VKWR--TSLIAWANDAGVKVYDAAND 210 (807)
Q Consensus 165 ~~~~~~~~~~~~~~~--~~~~V~~-l~~~--~~~la~~~d~~v~iwd~~~~ 210 (807)
||.. +|...+.++. ....+.. ..|+ +.++|....++|.||+..+-
T Consensus 287 WDI~-tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf 336 (698)
T KOG2314|consen 287 WDIA-TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSF 336 (698)
T ss_pred EEcc-ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCce
Confidence 9987 6655555554 3333333 4677 78999888899999998763
No 343
>PLN03077 Protein ECB2; Provisional
Probab=96.89 E-value=0.5 Score=57.92 Aligned_cols=109 Identities=10% Similarity=0.080 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhccchHHHHHHHHHH-HhcChhHHHHHhhh-cCCCCCh----
Q 003625 541 TDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHNLHDAIREKVVQL-MLLDCKRAVSLLIQ-NKDLITP---- 614 (807)
Q Consensus 541 ~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l-~~~~~~~~~~ll~~-~~~~~~~---- 614 (807)
+...+..|...|.+.|++++|.+++-++..+++..+ ..+ +.-+ -.-++++++++|-+ ....+.|
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~-------n~l---i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t 391 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW-------TAM---ISGYEKNGLPDKALETYALMEQDNVSPDEIT 391 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH-------HHH---HHHHHhCCCHHHHHHHHHHHHHhCCCCCcee
Confidence 445788999999999999999999988876653211 111 0001 11234455555543 1111222
Q ss_pred -HHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 003625 615 -SEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY 663 (807)
Q Consensus 615 -~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~ 663 (807)
..++..+... +........++.+...+........|.|+..|++.
T Consensus 392 ~~~ll~a~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 392 IASVLSACACL----GDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhcc----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 2333333322 12233334455555555555556677777777653
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.038 Score=57.19 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=53.0
Q ss_pred EEEecCC-EEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 003625 59 CVAVAER-MIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFT 124 (807)
Q Consensus 59 ~~s~~~~-~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~ 124 (807)
+++|..+ .+..++-+..|.|+|+.... +..+..| ..+++++|+-+.. +|..|..+|.|.|||++.
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 5777655 78899999999999996555 5667777 7899999998755 566777899999999986
No 345
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.77 E-value=0.22 Score=50.33 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=83.5
Q ss_pred CCeEEEEec-CCCeeEEecC---CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCC
Q 003625 73 AGTVHILDF-LGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTR 147 (807)
Q Consensus 73 dg~I~i~d~-~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~ 147 (807)
+|+|..||. +|+.+.+... ....+. . ..+++..+++++.++.+..||..+|+.. ......++...... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~--- 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-T-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV-D--- 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEE-T-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE-E---
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccc-e-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee-c---
Confidence 688999998 6777666543 222221 1 2335777888899999999999888765 44433322111111 1
Q ss_pred cCCCEEEEecCCCeEEEEEcccCCccceEe-ecCC-----cCeEEEEEeCCEEEEE-eCCcEEEEEcCCCceEEeeeC
Q 003625 148 KMSRRFVAGGLAGHLYLNSKKWLGYRDQVL-HSGE-----GPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIER 218 (807)
Q Consensus 148 ~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~-~~~~-----~~V~~l~~~~~~la~~-~d~~v~iwd~~~~~~~~~i~~ 218 (807)
+..+++++.++.+..++.. +|...... .... .......+.+..++.+ .++.+..+|..+|+.+.....
T Consensus 76 --~~~v~v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 76 --GGRVYVGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp --TTEEEEEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred --ccccccccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 3556666677788888754 45444432 2111 1122344446655555 599999999999998876655
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.0015 Score=73.14 Aligned_cols=158 Identities=10% Similarity=0.064 Sum_probs=102.4
Q ss_pred eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCC--e
Q 003625 86 VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG--H 161 (807)
Q Consensus 86 ~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg--~ 161 (807)
.++++.|+...+|++|+.+.++|+.|+..|.|+++++.+|... ..+.|. +|+.+.=+.+ |...++.+.-. -
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d-----gs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD-----GSTQLTSSSSSSPL 1168 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC-----cceeeeeccccCch
Confidence 4567778899999999999999999999999999999997654 678888 9998877766 56555554432 2
Q ss_pred EEEEEcccCCccceEeecCCcCeEEEEEeC---CEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCC
Q 003625 162 LYLNSKKWLGYRDQVLHSGEGPVHVVKWRT---SLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDT 238 (807)
Q Consensus 162 v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~---~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 238 (807)
..+|+....+.....+. .-.++.|+. ..++++......+||+.++.++.++-.+. ........+..|+...
T Consensus 1169 saLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~--~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT--VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc--hhhhhhccccccCCCc
Confidence 55676543233333222 346788883 22333334567899999988776533221 1111123455666444
Q ss_pred EEEEEeCCcEEEEEEeeCC
Q 003625 239 LLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 239 ~l~~g~d~~i~vw~~~~~~ 257 (807)
.|+. +||. +||++..+
T Consensus 1243 ~LIl-ndGv--LWDvR~~~ 1258 (1516)
T KOG1832|consen 1243 TLIL-NDGV--LWDVRIPE 1258 (1516)
T ss_pred ceEe-eCce--eeeeccHH
Confidence 4433 4443 68887653
No 347
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.74 E-value=0.2 Score=55.75 Aligned_cols=255 Identities=17% Similarity=0.227 Sum_probs=139.4
Q ss_pred EEeCChhhHHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhh
Q 003625 391 AKPRDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAH 470 (807)
Q Consensus 391 ~~~~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~ 470 (807)
+...+.++.|-++-+-++|+||+.+++....+ .+..+.+.|.+.|...++-++|+++-.. +
T Consensus 555 leqn~te~aigmy~~lhkwde~i~lae~~~~p--~~eklk~sy~q~l~dt~qd~ka~elk~s-----------------d 615 (1636)
T KOG3616|consen 555 LEQNATEEAIGMYQELHKWDEAIALAEAKGHP--ALEKLKRSYLQALMDTGQDEKAAELKES-----------------D 615 (1636)
T ss_pred HhcccHHHHHHHHHHHHhHHHHHHHHHhcCCh--HHHHHHHHHHHHHHhcCchhhhhhhccc-----------------c
Confidence 34455666777777788888888888754432 4577899999999999999999987211 1
Q ss_pred cCCCCcccccCcCCCCCCCHHHHHHHHH--HHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHH
Q 003625 471 LRQLPVLVPYMPTENPRLRDTAYEVALV--ALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEAL 548 (807)
Q Consensus 471 ~~~l~~L~~yl~~~~~~l~~~~~~~~L~--~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 548 (807)
...+..+.-||....|. ..-...|+ .++. + ..++.-+-..+ -+..+|+-+
T Consensus 616 gd~laaiqlyika~~p~---~a~~~a~n~~~l~~---d------------------e~il~~ia~al----ik~elydka 667 (1636)
T KOG3616|consen 616 GDGLAAIQLYIKAGKPA---KAARAALNDEELLA---D------------------EEILEHIAAAL----IKGELYDKA 667 (1636)
T ss_pred CccHHHHHHHHHcCCch---HHHHhhcCHHHhhc---c------------------HHHHHHHHHHH----HhhHHHHhh
Confidence 11122333333333221 11111111 0111 1 11111111111 123489999
Q ss_pred HHHHHhcCCHHHHHHHHHHccC-cchhhHhhhccchHHHH-------HHHHHHHhcChhHHHHHhhhcCCCCChHHHHHH
Q 003625 549 AELYVIDGHYEKAFSLYADLMK-PYIFDFIENHNLHDAIR-------EKVVQLMLLDCKRAVSLLIQNKDLITPSEVVTQ 620 (807)
Q Consensus 549 ~~ly~~~~~~~~al~~~~~~~~-~~~~~~i~~~~~~~~~~-------~~~~~l~~~~~~~~~~ll~~~~~~~~~~~vi~~ 620 (807)
..+|++..++++|++|+.+-.- ..++++.+ ..+.+.|. .++..+-+ .+.+++-|++.. ..++.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q--~daainhfiea~------~~~ka 738 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQ--LDAAINHFIEAN------CLIKA 738 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHh--HHHHHHHHHHhh------hHHHH
Confidence 9999999999999999986432 23444422 22211111 11212211 245677676531 22222
Q ss_pred HhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHH
Q 003625 621 LLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFIL 700 (807)
Q Consensus 621 l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~ 700 (807)
.+..-.....++.+ .-|+.+-. ......++......|+. .=+.+.|=++....+++...+-+|
T Consensus 739 ieaai~akew~kai-~ildniqd--qk~~s~yy~~iadhyan--------------~~dfe~ae~lf~e~~~~~dai~my 801 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAI-SILDNIQD--QKTASGYYGEIADHYAN--------------KGDFEIAEELFTEADLFKDAIDMY 801 (1636)
T ss_pred HHHHhhhhhhhhhH-hHHHHhhh--hccccccchHHHHHhcc--------------chhHHHHHHHHHhcchhHHHHHHH
Confidence 22110000223332 23343322 22334566666666653 223456777777888899999999
Q ss_pred hhcCChHHHHHHHHHHhC
Q 003625 701 GRMGNTKHALAVIINKLG 718 (807)
Q Consensus 701 ~r~g~~~~Al~~~i~~l~ 718 (807)
++.|++++|.++...-.+
T Consensus 802 ~k~~kw~da~kla~e~~~ 819 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG 819 (1636)
T ss_pred hccccHHHHHHHHHHhcC
Confidence 999999999988876543
No 348
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.73 E-value=0.53 Score=56.14 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcc
Q 003625 542 DALKEALAELYVIDGHYEKAFSLYADLM 569 (807)
Q Consensus 542 ~~~~~~l~~ly~~~~~~~~al~~~~~~~ 569 (807)
..-+..+..-|.+.|++++|++++.++.
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4467889999999999999999998774
No 349
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.72 E-value=1.1 Score=47.76 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=97.1
Q ss_pred CeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeC----------CCcEEEEeccCCcee-EEecCC-------
Q 003625 74 GTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSD----------DGSVVINSLFTDEKM-KFDYHR------- 134 (807)
Q Consensus 74 g~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~----------Dg~v~iwd~~~~~~~-~~~~~~------- 134 (807)
|+|.+.|..... +..+..-..+- .+ +||||+.+..+.. +..|.+||..+.+.. .+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999996444 55554433332 24 8999998877665 788999999996654 343211
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEec-C-CCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEEeCCcEEEEEcCC-
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGG-L-AGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWANDAGVKVYDAAN- 209 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~-~-dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~~d~~v~iwd~~~- 209 (807)
....++++|+ |+++.+.. . +..|.+.|.. .++....+.-.. ...-...+ ..+.+.+.|+......+.+
T Consensus 105 ~~~~~~~ls~d-----gk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSLTPD-----NKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEECCC-----CCEEEEecCCCCCEEEEEECC-CCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCC
Confidence 3347899999 88777665 3 6788888875 333333333221 11222222 3444555555554443332
Q ss_pred Cce-EEeeeC--CCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 210 DQR-ITFIER--PRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 210 ~~~-~~~i~~--~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
++. ...... ....+-.. .+.....++..+.++..|.|.+.|+....
T Consensus 178 g~~~~~~~~vf~~~~~~v~~--rP~~~~~dg~~~~vs~eG~V~~id~~~~~ 226 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLIN--HPAYSNKSGRLVWPTYTGKIFQIDLSSGD 226 (352)
T ss_pred CceEEeeeeeecCCcccccc--CCceEcCCCcEEEEecCCeEEEEecCCCc
Confidence 221 111111 10000001 11222337888888866999999976544
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0045 Score=63.70 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=68.6
Q ss_pred EEecCCCcceeEEEEcCCCC-EEEEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 87 KEFPAHTAAVNDLSFDVDGE-YVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 87 ~~~~~h~~~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
.-+..|...|.+++|||..+ .+..++.+.+|+|.|+.+..+. .+..++++++++|+-+ +.+++..|..+|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDld----e~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLD----ERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccC----CcceeEEeccCceEEE
Confidence 34456778899999999877 6888999999999999996655 5777889999999988 4678999999999999
Q ss_pred EEcccCCc
Q 003625 165 NSKKWLGY 172 (807)
Q Consensus 165 ~~~~~~~~ 172 (807)
||.+....
T Consensus 263 yD~R~~~~ 270 (463)
T KOG1645|consen 263 YDMRQPEG 270 (463)
T ss_pred EEccCCCc
Confidence 99875543
No 351
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.68 E-value=0.94 Score=49.81 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=99.7
Q ss_pred cCCEEEEEecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEecCCceEEE-
Q 003625 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAI- 139 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v- 139 (807)
.+..+++|+.+|.++.+|. +|+.+.+.........+... .+..++.++.+|.+..+|..+++.. ......+...+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 5667778899999999998 57766555433221111112 2456777888999999999988765 33322211100
Q ss_pred -EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec--CC--c------Ce-EE-EEEeCCEEEEEeCCcEEEEE
Q 003625 140 -SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS--GE--G------PV-HV-VKWRTSLIAWANDAGVKVYD 206 (807)
Q Consensus 140 -~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~--~~--~------~V-~~-l~~~~~~la~~~d~~v~iwd 206 (807)
.-+|-.. +..++.++.+|.+...+.. ++...-.... .. . .+ .+ +...+.+++++.++.+..+|
T Consensus 197 ~~~sP~v~---~~~v~~~~~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 197 GESAPATA---FGGAIVGGDNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred CCCCCEEE---CCEEEEEcCCCEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 0122110 2346667778887766543 2322111110 00 0 00 11 11224555556789999999
Q ss_pred cCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
..+++.+-..... . ...+...++.+++++.+|.+..++..++.
T Consensus 273 ~~tG~~~W~~~~~--~------~~~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 273 LRSGQIVWKREYG--S------VNDFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCCCCEEEeecCC--C------ccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 9998766432211 1 11223345555555688889888887664
No 352
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.66 E-value=0.042 Score=63.88 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=92.3
Q ss_pred ecCCeEEEEec-CCCeeEEecCCCcc-eeEEEEcC-----CCCEEEEEeCCCcEEEEeccC-C-ceeE-----EecCCce
Q 003625 71 THAGTVHILDF-LGNQVKEFPAHTAA-VNDLSFDV-----DGEYVGSCSDDGSVVINSLFT-D-EKMK-----FDYHRPM 136 (807)
Q Consensus 71 s~dg~I~i~d~-~~~~~~~~~~h~~~-V~~l~~s~-----~g~~l~s~~~Dg~v~iwd~~~-~-~~~~-----~~~~~~v 136 (807)
.....++-.|+ .|+.+..+..|... |.+++=+. +..-...|-.+..+..||.+- + ++.. +......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34567888888 47778889887754 65443221 123356677788999999886 2 2321 1112277
Q ss_pred EEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcC
Q 003625 137 KAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 137 ~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~ 208 (807)
+|++-+.+ .+||+|+.+|.|++|+.. ..+..+.+.+-..||.+|..+ |++++++.+..+-+++..
T Consensus 581 s~~aTt~~------G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTED------GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred eEEEecCC------ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 78877766 689999999999999863 223444556667899999988 999998888888888864
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0068 Score=66.14 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=74.3
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceE-EEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC
Q 003625 94 AAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMK-AISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (807)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~-~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (807)
..|.-+.|+|.-..+|.+..+|.+.+..+...++.++..+. +++ +++|.|+ |+.+++|-.||+|++.|..-.+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~D-----GkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPD-----GKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCC-----CCEEEEEecCCeEEEEEccCCC
Confidence 35677899999999999999999999999988888888777 777 9999999 9999999999999999875222
Q ss_pred ccceEeecCCcCeEEEEEe
Q 003625 172 YRDQVLHSGEGPVHVVKWR 190 (807)
Q Consensus 172 ~~~~~~~~~~~~V~~l~~~ 190 (807)
...........+|+++.|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 2222233445677777776
No 354
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.58 E-value=0.74 Score=56.48 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003625 543 ALKEALAELYVIDGHYEKAFSLYAD 567 (807)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~~~ 567 (807)
..+..++..|...|++++|+.++.+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444555556666666666666554
No 355
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.47 E-value=0.12 Score=59.29 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=99.3
Q ss_pred HHHHHHHHhhhc--CCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCc----c--h----------hhHhhhcc-----c
Q 003625 526 PVISAIEPQLNS--SSMTDALKEALAELYVIDGHYEKAFSLYADLMKP----Y--I----------FDFIENHN-----L 582 (807)
Q Consensus 526 ~~~~~~~~~~~~--~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~----~--~----------~~~i~~~~-----~ 582 (807)
.++..++++... ..-+..-+..++.||.+..+|++|+.+++..... + . +..+-..+ .
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 334445555531 2223345678999999999999999999987551 1 1 11122222 1
Q ss_pred hHHHHHHHHHHHhcChhHHHHHhhh--cCCCCChHHHHHHHhccc---ccCchhhHHHHHHHHHHhhCCCCChhHHHHHH
Q 003625 583 HDAIREKVVQLMLLDCKRAVSLLIQ--NKDLITPSEVVTQLLNAR---DKCDSRYFLHLYLHALFEVNPHAGKDFHDMQV 657 (807)
Q Consensus 583 ~~~~~~~~~~l~~~~~~~~~~ll~~--~~~~~~~~~vi~~l~~~~---~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~ 657 (807)
+. +..-..-|+.++..+..+-+.+ ....++|.+....+.+.. ...++......||--+..........+-=.+.
T Consensus 378 l~-v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LR-VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred ch-hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 11 1233334455443333222222 113445655554443321 12246777889999998888777777777888
Q ss_pred HHHHHhc-hHHHHHHhhcCCCCCHHHHHHHHhcC-CchhHHHHHHhhcCChHHHHHHHHH
Q 003625 658 ELYADYD-LKMLLPFLRSSQHYTLEKAYEICVKR-DLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 658 ~ly~~~~-~~kl~~fL~~~~~y~~~~al~~~~~~-~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
++|.+.. ++.-+.|- ++||...+.+ +-.--.+=|+.+.|+|++|+.++-.
T Consensus 457 ~c~~~l~e~e~A~e~y--------~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFY--------EKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhhHHHHHHHH--------HHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 8886532 22222222 1233322221 1222345678899999999998876
No 356
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.45 E-value=0.09 Score=56.15 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=93.7
Q ss_pred EEEecCCEEEEEe-----------cCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEe--CCCcEEEEeccCC
Q 003625 59 CVAVAERMIALGT-----------HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS--DDGSVVINSLFTD 125 (807)
Q Consensus 59 ~~s~~~~~la~gs-----------~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~--~Dg~v~iwd~~~~ 125 (807)
-|.+.|+++++-. ....+++++..++.+.....-.++|...+|+|.++.+++++ .+-.+.++|+++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 3777788665421 12467788887766665556688999999999998876654 6788999999877
Q ss_pred ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCC---CeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--
Q 003625 126 EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLA---GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-- 197 (807)
Q Consensus 126 ~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~d---g~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-- 197 (807)
..+.... +=+.+-|+|. ++++++++-+ |.+.+|+..-.-.....+.+.. .+-+.|+ ++++-++
T Consensus 309 --l~~~~Pe~~rNT~~fsp~-----~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 309 --LRFYFPEQKRNTIFFSPH-----ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred --eEEecCCcccccccccCc-----ccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCC
Confidence 2333333 5566789999 7888886554 5688887641111121222222 3345677 5655543
Q ss_pred -----eCCcEEEEEcCCCc
Q 003625 198 -----NDAGVKVYDAANDQ 211 (807)
Q Consensus 198 -----~d~~v~iwd~~~~~ 211 (807)
.|++++|||+....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 37789999987544
No 357
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.12 Score=55.73 Aligned_cols=146 Identities=11% Similarity=0.180 Sum_probs=89.9
Q ss_pred CCCE-EEEEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCC--cCCCEEEEecCCCeEEEEEcccCCc-cceEee
Q 003625 104 DGEY-VGSCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTR--KMSRRFVAGGLAGHLYLNSKKWLGY-RDQVLH 178 (807)
Q Consensus 104 ~g~~-l~s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~--~~~~~l~~g~~dg~v~l~~~~~~~~-~~~~~~ 178 (807)
+.+. +.+++.-..++-.|+..|++. .+..+..|+-+.+.|++.. .....-+.|-.+..|.-||.+..+. +.....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 4444 445555667888899998887 4777777777888887431 1122345566677788888875554 333333
Q ss_pred cCC----cCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEE
Q 003625 179 SGE----GPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIA 251 (807)
Q Consensus 179 ~~~----~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw 251 (807)
+|+ ..-.|.+-. |.+++++.+|.||+||. .+....+. .|+.+..+..+.-+ +|.++++..+..+-+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTA-----lPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTA-----LPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhc-----ccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 332 122333333 56666668999999997 44433321 22333345555543 8888888889998888
Q ss_pred EEee
Q 003625 252 SIKT 255 (807)
Q Consensus 252 ~~~~ 255 (807)
++.-
T Consensus 498 ~t~~ 501 (644)
T KOG2395|consen 498 DTLI 501 (644)
T ss_pred EEec
Confidence 8764
No 358
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=96.35 E-value=0.31 Score=49.04 Aligned_cols=112 Identities=13% Similarity=0.239 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHhc-----CCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCCh---h-HHHHHHHHhcC
Q 003625 675 SQHYTLEKAYEICVK-----RDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDD---E-LWEELIKQCLN 745 (807)
Q Consensus 675 ~~~y~~~~al~~~~~-----~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~---~-lw~~ll~~~~~ 745 (807)
+...+.+-++...+. ..-.--.+.-..|+|+|++|+++++++ =++.++.||+....+ . -|..||--.-+
T Consensus 217 gpsl~v~silpvLE~Lsed~~~gLSlhlLC~trL~~~E~sId~LLdr--CPqAVV~YA~helk~e~~~lWWkkLLpELc~ 294 (353)
T PF14763_consen 217 GPSLDVESILPVLEPLSEDTDGGLSLHLLCITRLGEYEKSIDKLLDR--CPQAVVPYANHELKEEHQELWWKKLLPELCD 294 (353)
T ss_pred CCCccHHHHHHHHhhcccccccCeehhhhhhhhhccHHHHHHHHHHh--CcHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 345666666665542 112223466677899999999999996 589999999987622 2 46666654332
Q ss_pred C-------ch----HHHHHHHhhcCCCCHHHHHhhCCCCCccccHHHHHHHHHh
Q 003625 746 K-------PE----MVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIIT 788 (807)
Q Consensus 746 ~-------~~----~~~~lL~~~~~~i~~~~vl~~lp~~~~i~~~~~~l~~~l~ 788 (807)
. .+ .+++.|......++|.+++..||++.+..=+-+||...-+
T Consensus 295 rir~~~~~~~l~ls~LKEtLsvvA~eLe~~dFLnlLPeDGtAaFFLPyLl~cs~ 348 (353)
T PF14763_consen 295 RIRCGGDRQELLLSSLKETLSVVAMELELRDFLNLLPEDGTAAFFLPYLLYCSR 348 (353)
T ss_pred HHhccCcchHHHHHHHHHHHHHhhccCCHHHHHhhCCCccchHHHHHHHHHHHh
Confidence 1 11 4567777778889999999999999999999999987665
No 359
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.053 Score=61.11 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=58.6
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCCCeeEEe-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF 123 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~ 123 (807)
.||+|..-.|+.|-.-|.+.+|....+..++. ..|..+|..+.||++|..++|+..=|.|..|...
T Consensus 65 LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 65 LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 58888888999999999999999976666555 4599999999999999999999999999999876
No 360
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.26 E-value=0.39 Score=47.16 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=57.5
Q ss_pred cCCEEEEEecCCeEEEEecC-CCeeEEecCCCc-ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-eEEecCC-ceEE
Q 003625 63 AERMIALGTHAGTVHILDFL-GNQVKEFPAHTA-AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-MKFDYHR-PMKA 138 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~-~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-~~~~~~~-~v~~ 138 (807)
-|++++.|+..|.+++.+.+ |.....+..-.. .+. -..++++..+..|+.|+..+..|.++..+ .+.+... ...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence 67899999999999999995 556666554322 232 33688899999999999999999998544 4554444 3334
Q ss_pred EEeCCC
Q 003625 139 ISLDPD 144 (807)
Q Consensus 139 v~~~p~ 144 (807)
-+..|.
T Consensus 141 P~i~~g 146 (354)
T KOG4649|consen 141 PVIAPG 146 (354)
T ss_pred ceecCC
Confidence 455553
No 361
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.22 E-value=0.09 Score=60.04 Aligned_cols=174 Identities=11% Similarity=0.157 Sum_probs=105.7
Q ss_pred cCCEEEEEecCCeEEEEecCCCeeEEecC-CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc-eeEEecCC-ceEEE
Q 003625 63 AERMIALGTHAGTVHILDFLGNQVKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE-KMKFDYHR-PMKAI 139 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~-~~~~~~~~-~v~~v 139 (807)
++..++.|+....+..+|..+........ ..+.|+-++ .+++.+.+|...|+|.+-|..+-+ +.++..|. .|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 45566677777777777876544333322 333455444 458899999999999999999954 56799999 88776
Q ss_pred EeCCCCCCcCCCEEEEecCCC---------eEEEEEcccCCccceEeecCCcCeEEEEEe----CCEEEEEeCCcEEEEE
Q 003625 140 SLDPDYTRKMSRRFVAGGLAG---------HLYLNSKKWLGYRDQVLHSGEGPVHVVKWR----TSLIAWANDAGVKVYD 206 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg---------~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~----~~~la~~~d~~v~iwd 206 (807)
... |+.++++|..+ .|++||.+... ....+.-+-++ .=+.|. .++++++..|.+.+.|
T Consensus 224 Dv~-------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 224 DVQ-------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred ecc-------CCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 553 56777776543 45677766332 22222222222 224444 2455556788888888
Q ss_pred cC---CCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEE-eCCcEEEEE
Q 003625 207 AA---NDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIG-WGTYIKIAS 252 (807)
Q Consensus 207 ~~---~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g-~d~~i~vw~ 252 (807)
.. +...-.....+. ...+..+.+ ++++.++.| .+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~-----~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPN-----GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccC-----CCcceeEEecCCCceEEEecccCcEeeec
Confidence 43 221111111111 112344555 388999999 999999998
No 362
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.16 Score=53.41 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=116.7
Q ss_pred EEEecCCEEEEEec-CCeEEEEecC-CCee--EEecCCCcceeEEEEcCCCC---EE-EEEeCCCcEEEEeccCCce---
Q 003625 59 CVAVAERMIALGTH-AGTVHILDFL-GNQV--KEFPAHTAAVNDLSFDVDGE---YV-GSCSDDGSVVINSLFTDEK--- 127 (807)
Q Consensus 59 ~~s~~~~~la~gs~-dg~I~i~d~~-~~~~--~~~~~h~~~V~~l~~s~~g~---~l-~s~~~Dg~v~iwd~~~~~~--- 127 (807)
+.+.+|..+++++. |..++++|+. ...+ ..+.--.+.+.. +...|. .+ ++...+|.+.++|-...-+
T Consensus 60 ~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 60 AVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 45668888888777 9999999983 2222 122222233321 122231 23 3344678999999876432
Q ss_pred eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC----C-------ccceE---eecCCcCeEEEEEe--
Q 003625 128 MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL----G-------YRDQV---LHSGEGPVHVVKWR-- 190 (807)
Q Consensus 128 ~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~----~-------~~~~~---~~~~~~~V~~l~~~-- 190 (807)
..-..|. ||.++.+.|. +..+++....|.|..|...-. . +...- +....+..+++.|+
T Consensus 138 ~fkklH~sPV~~i~y~qa-----~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQA-----GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred eecccccCceEEEEeecc-----ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2334566 9999999998 899999999999999965410 0 00000 11123556788888
Q ss_pred CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCC----CCCCCCCC-----------------------Ceeeee-CCCEEE
Q 003625 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRG----SPRPELLL-----------------------PHLVWQ-DDTLLV 241 (807)
Q Consensus 191 ~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~----~~~~~~~~-----------------------~~l~~~-~~~~l~ 241 (807)
|..++.- .|..|++++..+++.++.+..... .+...... +.+.|. .+.+|+
T Consensus 213 g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fll 292 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLL 292 (558)
T ss_pred cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEE
Confidence 6666655 799999999999976665443210 01111112 233342 456677
Q ss_pred EEeCCcEEEEEEeeCC
Q 003625 242 IGWGTYIKIASIKTNQ 257 (807)
Q Consensus 242 ~g~d~~i~vw~~~~~~ 257 (807)
.|.-=-|+|.++.++.
T Consensus 293 y~t~~gikvin~~tn~ 308 (558)
T KOG0882|consen 293 YGTILGIKVINLDTNT 308 (558)
T ss_pred eecceeEEEEEeecCe
Confidence 6655557888887765
No 363
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.07 E-value=4.4 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003625 543 ALKEALAELYVIDGHYEKAFSLYAD 567 (807)
Q Consensus 543 ~~~~~l~~ly~~~~~~~~al~~~~~ 567 (807)
..+..++.+|...|++++|+.++.+
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444555556666666666665554
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.05 E-value=0.39 Score=41.16 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=63.6
Q ss_pred CEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCC
Q 003625 65 RMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPD 144 (807)
Q Consensus 65 ~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~ 144 (807)
+-|++||.|..|++|+-+ ..+..+..+ +.|++++-... ..++.+..+|+|-+|+-. .+..+.+....+.++++..-
T Consensus 16 ~eLlvGs~D~~IRvf~~~-e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-~RlWRiKSK~~~~~~~~~D~ 91 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS-QRLWRIKSKNQVTSMAFYDI 91 (111)
T ss_pred ceEEEecCCcEEEEEeCC-cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc-ceeeeeccCCCeEEEEEEcC
Confidence 589999999999999954 345555444 46777765544 678999999999999753 33444444445555555332
Q ss_pred CCCcCCCEEEEecCCCeEE
Q 003625 145 YTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 145 ~~~~~~~~l~~g~~dg~v~ 163 (807)
...+...+++|-.+|.|-
T Consensus 92 -~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 92 -NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCCCceEEEEEecCCeEE
Confidence 122345799999988874
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.02 E-value=1.6 Score=43.99 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=100.4
Q ss_pred EEEec-CCEEEEEecCCeEEEEecCCCeeEEecCC-CcceeEEEEcCCCCEEEEEeCCCcEEEEeccC--Cc-----eeE
Q 003625 59 CVAVA-ERMIALGTHAGTVHILDFLGNQVKEFPAH-TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DE-----KMK 129 (807)
Q Consensus 59 ~~s~~-~~~la~gs~dg~I~i~d~~~~~~~~~~~h-~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~-----~~~ 129 (807)
++.|+ +.++|+....+.|..++.+|+.++++.-. .+..-.|++..+|.++++--.++.+.++++.. .. ...
T Consensus 28 Ty~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~ 107 (248)
T PF06977_consen 28 TYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQK 107 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEE
T ss_pred EEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceE
Confidence 46665 45778888899999999999887776443 24577888888888777766789999988843 11 111
Q ss_pred E--ec---CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc--CCccceEe--------ecCCcCeEEEEEe---
Q 003625 130 F--DY---HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW--LGYRDQVL--------HSGEGPVHVVKWR--- 190 (807)
Q Consensus 130 ~--~~---~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~--~~~~~~~~--------~~~~~~V~~l~~~--- 190 (807)
+ .. +. .+-.++|+|. ++.++++-...-..++...- ........ ...-..+.+++++
T Consensus 108 ~~l~~~~~~N~G~EGla~D~~-----~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 108 ISLGFPNKGNKGFEGLAYDPK-----TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EE---S---SS--EEEEEETT-----TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred EecccccCCCcceEEEEEcCC-----CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 2 11 22 7899999998 45555555554555564432 11111111 0122347888888
Q ss_pred CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCC---CCCCCCeeeee-CCCEEEEEeCCcEEEE
Q 003625 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPR---PELLLPHLVWQ-DDTLLVIGWGTYIKIA 251 (807)
Q Consensus 191 ~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~---~~~~~~~l~~~-~~~~l~~g~d~~i~vw 251 (807)
|++++.+ .+..+..+| .+|+.+..+....+..+ .....-.+++. +|.+.+++.-+..+++
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5677777 577888999 56777776555432111 01112346664 5566666665555443
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.039 Score=61.25 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=82.1
Q ss_pred CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEec--CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 92 HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 92 h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
|...|.--+++..+++++.|+.-|.+++++-.++....++. .. .+..+..+++ ..++|.|+..|.|.++...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-----e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-----EYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-----hHhhhhhcCCceEEeehhh
Confidence 44456656778889999999999999999998887766544 33 5566677887 7889999999999888654
Q ss_pred cCCccceEe-----ecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCC
Q 003625 169 WLGYRDQVL-----HSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 169 ~~~~~~~~~-----~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~ 209 (807)
..+.....+ ..|...|++++|+ +.-+.+| +.|.|..-.+.+
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 322221111 1267789999999 6666677 567777777766
No 367
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.87 E-value=0.49 Score=52.05 Aligned_cols=186 Identities=13% Similarity=0.052 Sum_probs=101.2
Q ss_pred cCCEEEEEecCCeEEEEec-CCCeeEEecCCCc----------ce-eEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-E
Q 003625 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTA----------AV-NDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-K 129 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~----------~V-~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~ 129 (807)
.+..+++++.+|.+.-+|. +|+.+.+...... .+ ..+.. .+..+..++.+|.+..+|..+++.. +
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 5778888888999999998 5776554432210 00 00111 3567778888999999999887754 3
Q ss_pred EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCC------cCeEEEEEeCCEEEEEeCCcEE
Q 003625 130 FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGE------GPVHVVKWRTSLIAWANDAGVK 203 (807)
Q Consensus 130 ~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~------~~V~~l~~~~~~la~~~d~~v~ 203 (807)
......+.+ +|-. .+..+++++.+|.+..+|.. +|+..-...... +...-+...+.+++.+.++.+.
T Consensus 146 ~~~~~~~~s---sP~v---~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~ 218 (394)
T PRK11138 146 TKVAGEALS---RPVV---SDGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVS 218 (394)
T ss_pred ccCCCceec---CCEE---ECCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEE
Confidence 333222221 1110 02456667778888877764 343322221110 0011112234555555788898
Q ss_pred EEEcCCCceEEeeeCCCCCCCCC-----CCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 204 VYDAANDQRITFIERPRGSPRPE-----LLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~-----~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
.+|..+++.+-............ .........++..++++.++.+..+|..++.
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 89998887654332211000000 0011112235555556688888888887665
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.74 E-value=0.43 Score=40.94 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=62.2
Q ss_pred eeEEEEcC---CC-CEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC
Q 003625 96 VNDLSFDV---DG-EYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (807)
Q Consensus 96 V~~l~~s~---~g-~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (807)
|+++++.. +| +.|+.||.|..|++|+-. ..+..+.....|.+++-... ..|+.|..+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~------~~F~Y~l~NGTVGvY~~~--- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGG------GRFAYALANGTVGVYDRS--- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecccceEEEEEcCC------CEEEEEecCCEEEEEeCc---
Confidence 55666543 33 479999999999999753 22334555557777776655 679999999999999763
Q ss_pred ccceEeecCCcCeEEEEEe---C----CEEEEEeCCcEE
Q 003625 172 YRDQVLHSGEGPVHVVKWR---T----SLIAWANDAGVK 203 (807)
Q Consensus 172 ~~~~~~~~~~~~V~~l~~~---~----~~la~~~d~~v~ 203 (807)
...-..++ ...++++.+. + .++++.++|.|-
T Consensus 72 ~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222222 2336666655 2 455544777663
No 369
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.49 E-value=0.98 Score=50.64 Aligned_cols=292 Identities=18% Similarity=0.238 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCC---Cccccc-CcCCCCCC---------CHHHH
Q 003625 427 DEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQL---PVLVPY-MPTENPRL---------RDTAY 493 (807)
Q Consensus 427 ~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l---~~L~~y-l~~~~~~l---------~~~~~ 493 (807)
.+|.+..++.|+...-|++|+.++.++-. |...+.-|-..+.. -.|..+ .|...-.| .-..|
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d-----~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHD-----FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhC-----HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhH
Confidence 46888888999999999999999777643 33333333221110 001110 12211111 11345
Q ss_pred HHHHHHHhcCCCChHHHHHHh--hcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHcc-C
Q 003625 494 EVALVALATNPSFHKYLLSTV--KSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLM-K 570 (807)
Q Consensus 494 ~~~L~~~~~~~~~~~~~~~~i--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~-~ 570 (807)
+...++|++.+-........| +.|+.-++-++ -+.++. ....+|-..+.-|..+|+|+.|-+++.+-. .
T Consensus 723 daainhfiea~~~~kaieaai~akew~kai~ild----niqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 723 DAAINHFIEANCLIKAIEAAIGAKEWKKAISILD----NIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHH----Hhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 667788877553333344443 46764433322 222222 222355555555555555555555555432 2
Q ss_pred cchhhHhhhccchHHHHHHHHHHHhcChhHHHHHhhhcC-----------------CCCChHHHHHHHhcccccCchhhH
Q 003625 571 PYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLLIQNK-----------------DLITPSEVVTQLLNARDKCDSRYF 633 (807)
Q Consensus 571 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~-----------------~~~~~~~vi~~l~~~~~~~~~~~~ 633 (807)
.++++.-.+.+-|+...+..... +-|+.++.+.+... .--.|+..|..+.......+
T Consensus 795 ~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~dd---- 868 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDD---- 868 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchH----
Confidence 33444434444333322222111 12223332222100 01235666666654321111
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhc-----hHHHHHHhhcC------CCCCH----HHHHHHHhc---CCchhH
Q 003625 634 LHLYLHALFEVNPHAGKDFHDMQVELYADYD-----LKMLLPFLRSS------QHYTL----EKAYEICVK---RDLLRE 695 (807)
Q Consensus 634 ~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~-----~~kl~~fL~~~------~~y~~----~~al~~~~~---~~~~~e 695 (807)
.++ |+.+ .....+|++-..+--++. ...=..||+.. +-|.. +.|.++.+. .+....
T Consensus 869 mir----lv~k--~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 869 MIR----LVEK--HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred HHH----HHHH--hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 111 1111 122233443333322211 11123455443 22332 456777764 457777
Q ss_pred HHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHHhc
Q 003625 696 QVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQCL 744 (807)
Q Consensus 696 ~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~~~ 744 (807)
.+||+.|.=--+.|+++ ++++|-++.|++++.....=++=+.|.+...
T Consensus 943 v~flwaksiggdaavkl-lnk~gll~~~id~a~d~~afd~afdlari~~ 990 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKL-LNKHGLLEAAIDFAADNCAFDFAFDLARIAA 990 (1636)
T ss_pred HHHHHHHhhCcHHHHHH-HHhhhhHHHHhhhhhcccchhhHHHHHHHhh
Confidence 88998887666666665 4567888999999877654444444444433
No 370
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.48 E-value=0.69 Score=49.70 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=78.8
Q ss_pred EEEecCCCeeEE-ecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEE
Q 003625 77 HILDFLGNQVKE-FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVA 155 (807)
Q Consensus 77 ~i~d~~~~~~~~-~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~ 155 (807)
..|+........ +....-++..++|||.|.+|++...- .|.+|+-........-.|..|..+.|+|+ ++++++
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~-----~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPN-----EKYLVT 88 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcc-----cceeee
Confidence 345544333322 33355688899999999999887654 58889877744333334558899999999 888888
Q ss_pred ecCCCe---------------EEEEEcccCCccceEeecCCcC--eE-EEEEe--CCEEEEEeCCcEEEEEc
Q 003625 156 GGLAGH---------------LYLNSKKWLGYRDQVLHSGEGP--VH-VVKWR--TSLIAWANDAGVKVYDA 207 (807)
Q Consensus 156 g~~dg~---------------v~l~~~~~~~~~~~~~~~~~~~--V~-~l~~~--~~~la~~~d~~v~iwd~ 207 (807)
-+..+. +.+||.. .+.....+.....+ .+ -+.|+ ..++|-.....++|+++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~-sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIA-SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred eccCCccChhhccCCccccCceeEEecc-CceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 766544 6667654 33333333333333 22 35566 45555556677899997
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.33 E-value=0.0049 Score=67.13 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=92.7
Q ss_pred EEe-cCCEEEEE----ecCCeEEEEecCCCe-----eEEecC-CCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee
Q 003625 60 VAV-AERMIALG----THAGTVHILDFLGNQ-----VKEFPA-HTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 60 ~s~-~~~~la~g----s~dg~I~i~d~~~~~-----~~~~~~-h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (807)
|.+ +.++||.| -.|..+.|||+.... ...+.+ ......+++|..+.+.+.+|.....+.++|++.....
T Consensus 110 wneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~ 189 (783)
T KOG1008|consen 110 WNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS 189 (783)
T ss_pred cccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence 444 56788887 346678999995432 122222 3345678999988899999999999999999853332
Q ss_pred EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC-CccceEeecCC----cCeEEEEEe----CCEEEEE-
Q 003625 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-GYRDQVLHSGE----GPVHVVKWR----TSLIAWA- 197 (807)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~~~~~~~~~~~----~~V~~l~~~----~~~la~~- 197 (807)
...... .+..+..+|- .+.++++-. ||.+.+||.-.. ......+...+ ..+..++|+ |.+.+..
T Consensus 190 ~~svnTk~vqG~tVdp~----~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPF----SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred hhhhhhhhcccceecCC----CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 222233 6677777884 156666655 899999984212 12222222222 248899999 3444444
Q ss_pred eCCcEEEEEcC
Q 003625 198 NDAGVKVYDAA 208 (807)
Q Consensus 198 ~d~~v~iwd~~ 208 (807)
..++|+.||+.
T Consensus 265 dS~tIrlydi~ 275 (783)
T KOG1008|consen 265 DSITIRLYDIC 275 (783)
T ss_pred CcceEEEeccc
Confidence 56789999986
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.30 E-value=3 Score=46.23 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=103.1
Q ss_pred ceeEEEEcCCCCEEEEE-eCCC----cEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCC--------
Q 003625 95 AVNDLSFDVDGEYVGSC-SDDG----SVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAG-------- 160 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~-~~Dg----~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-------- 160 (807)
.+...++||+|+++|-+ +..| .++++|+.+++...-.... ...++.|.++ ++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d-----~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDD-----GKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTT-----SSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCC-----CCEEEEEEeCcccccccCC
Confidence 44567899999998755 4444 4999999998765433223 2334999998 56554443222
Q ss_pred ---eEEEEEcccCCcc-ceEeecCCcC--eEEEEEe--CCEEEEE--e--C-CcEEEEEcCCC-----ceEEeeeCCCCC
Q 003625 161 ---HLYLNSKKWLGYR-DQVLHSGEGP--VHVVKWR--TSLIAWA--N--D-AGVKVYDAAND-----QRITFIERPRGS 222 (807)
Q Consensus 161 ---~v~l~~~~~~~~~-~~~~~~~~~~--V~~l~~~--~~~la~~--~--d-~~v~iwd~~~~-----~~~~~i~~~~~~ 222 (807)
.|..|...-.... ..++.+.... ...+..+ +++++.. + + ..+.+.+...+ .......+..+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~- 278 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG- 278 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-
Confidence 2666655422222 2344444443 4456666 6666543 2 3 34677777664 22222221110
Q ss_pred CCCCCCCCeeeeeCCCEEEEEeC--CcEEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCceEEEEe
Q 003625 223 PRPELLLPHLVWQDDTLLVIGWG--TYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY 300 (807)
Q Consensus 223 ~~~~~~~~~l~~~~~~~l~~g~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~vl~~ 300 (807)
....+...++.+++.+.+ ..-++..+.-.... ......+...-..+..+.++..+++.+++...
T Consensus 279 -----~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~---------~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 279 -----VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS---------PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp ------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS---------GGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred -----eEEEEEccCCEEEEeeCCCCCCcEEEEecccccc---------cccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 111222234444444422 12334333322211 00111123333335688999999888776655
Q ss_pred ecCCCCCcccccCCCCcccCCCCCCeEEEeccC-Cccc
Q 003625 301 IPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWN-NDEL 337 (807)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~-~~~i 337 (807)
. ...+.|++++.. +...
T Consensus 345 ~--------------------~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 345 E--------------------NGSSRLRVYDLDDGKES 362 (414)
T ss_dssp E--------------------TTEEEEEEEETT-TEEE
T ss_pred E--------------------CCccEEEEEECCCCcEE
Confidence 3 125789999998 5433
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.15 E-value=0.67 Score=50.46 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=102.7
Q ss_pred EEEecCCEEEEEecCCeEEEEecC-----C-Ce--------------------------------------eEEecCCCc
Q 003625 59 CVAVAERMIALGTHAGTVHILDFL-----G-NQ--------------------------------------VKEFPAHTA 94 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~~-----~-~~--------------------------------------~~~~~~h~~ 94 (807)
++++...-+++|...|.|.+|... + +. ..-++...+
T Consensus 8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g 87 (395)
T PF08596_consen 8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG 87 (395)
T ss_dssp EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence 455566688899999999988651 1 00 011233468
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE---Eec------CC-ceEEEEeCCCCCCc---CCCEEEEecCCCe
Q 003625 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---FDY------HR-PMKAISLDPDYTRK---MSRRFVAGGLAGH 161 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~------~~-~v~~v~~~p~~~~~---~~~~l~~g~~dg~ 161 (807)
+|++++.| |=.++|.|..+|.+.|.|+++..+.. +.. .. .|+++.|..-.-.. .+-.+++|+..|.
T Consensus 88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~ 166 (395)
T PF08596_consen 88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN 166 (395)
T ss_dssp SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence 89999987 55699999999999999998765532 111 22 78888886311001 1357899999999
Q ss_pred EEEEEcccCC------ccceEeecCCcCeEEEE-Ee---C--------------------CEEEEEeCCcEEEEEcCCCc
Q 003625 162 LYLNSKKWLG------YRDQVLHSGEGPVHVVK-WR---T--------------------SLIAWANDAGVKVYDAANDQ 211 (807)
Q Consensus 162 v~l~~~~~~~------~~~~~~~~~~~~V~~l~-~~---~--------------------~~la~~~d~~v~iwd~~~~~ 211 (807)
+.+|...... ........+.++|..+. ++ | .+++.+++..+|++...+.+
T Consensus 167 v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k 246 (395)
T PF08596_consen 167 VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSK 246 (395)
T ss_dssp EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---
T ss_pred EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCc
Confidence 9999654211 11111223556666554 32 1 36777789999999998776
Q ss_pred eEEeeeCCCCCCCCCCCCCeeeee-----CCCEEEEE--eCCcEEEEEEee
Q 003625 212 RITFIERPRGSPRPELLLPHLVWQ-----DDTLLVIG--WGTYIKIASIKT 255 (807)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~~~l~~~-----~~~~l~~g--~d~~i~vw~~~~ 255 (807)
......... .....+.+. .+...+++ .+|.|+++.+-.
T Consensus 247 ~~~K~~~~~------~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 247 GAHKSFDDP------FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEEE-SS-------EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred ccceeeccc------cccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 655432110 011112221 12333333 889999997644
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.07 E-value=0.89 Score=50.03 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=86.3
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEe---CC-CcEEEEeccCCceeE-EecCCceEEEEeCCCCCCc
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS---DD-GSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRK 148 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~---~D-g~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~ 148 (807)
+.+.+-|.+|...+.+..-...+..-+|+|++..++-.+ .. ..+.++++.+++... ......-..-+|+|+
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD---- 248 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD---- 248 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC----
Confidence 455555656555555555555677788999999866543 22 358899999865443 333334455689998
Q ss_pred CCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCc----EEEEEcCCCceE
Q 003625 149 MSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAG----VKVYDAANDQRI 213 (807)
Q Consensus 149 ~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~----v~iwd~~~~~~~ 213 (807)
+.+.+++...||...+|-....+.....+....+.-+.-.|+ |+.++..+|.. |.+++...+...
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 445667778889877776655555544455444444455666 77777665432 777777766653
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.03 E-value=0.6 Score=53.67 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=72.7
Q ss_pred EEEEecCCEEEEEecC------------CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEE---Eec
Q 003625 58 SCVAVAERMIALGTHA------------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI---NSL 122 (807)
Q Consensus 58 ~~~s~~~~~la~gs~d------------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i---wd~ 122 (807)
-.|+|+|+.+++.+.. +.+.+.++++..... ...+.|..+.|||||.+++... +|.|.+ -..
T Consensus 402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 3588888877666432 233333443322222 3356799999999999988766 477776 333
Q ss_pred cCCcee-----EEec-CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecC--CcCeEEEEEe
Q 003625 123 FTDEKM-----KFDY-HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG--EGPVHVVKWR 190 (807)
Q Consensus 123 ~~~~~~-----~~~~-~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~--~~~V~~l~~~ 190 (807)
..+... .+.. -. .+.++.|.++ +. ++++..++...+|....+|.....+.+. ..++.+++=+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~-----~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~ 549 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTG-----DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS 549 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecC-----CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecC
Confidence 334421 1222 22 4688999988 55 5566666666677766666554443332 3455555444
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.95 E-value=5.8 Score=42.12 Aligned_cols=171 Identities=12% Similarity=0.149 Sum_probs=94.5
Q ss_pred CeEEEEecC-CCeeEEecC-CCcceeEE---EEcCC----CCEEEEEeC----------CCcEEEEeccCC-----ceeE
Q 003625 74 GTVHILDFL-GNQVKEFPA-HTAAVNDL---SFDVD----GEYVGSCSD----------DGSVVINSLFTD-----EKMK 129 (807)
Q Consensus 74 g~I~i~d~~-~~~~~~~~~-h~~~V~~l---~~s~~----g~~l~s~~~----------Dg~v~iwd~~~~-----~~~~ 129 (807)
+.|++.|.. ...+.++.- ....++++ .+..+ ..+++.|.. .|.+.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357778773 334433322 12233333 34432 456766653 288999999873 3322
Q ss_pred ---EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEE
Q 003625 130 ---FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKV 204 (807)
Q Consensus 130 ---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~i 204 (807)
.....+|.+++--. ++ ++++.. +.|.+|+..... -...........++++...+++++.+ .-.++.+
T Consensus 82 i~~~~~~g~V~ai~~~~------~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFN------GR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEET------TE-EEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhhC------CE-EEEeec-CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence 33344888887653 35 444433 589998776333 11222222344788888888888888 5778887
Q ss_pred EEcCC-CceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-eCCcEEEEEEeeC
Q 003625 205 YDAAN-DQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 205 wd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
+..+. ...+..+.+... ..++.++.+- ++..++++ .+|.+.++.....
T Consensus 154 ~~~~~~~~~l~~va~d~~----~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQ----PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp EEEETTTE-EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred EEEEccCCEEEEEEecCC----CccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 75553 232333332211 2345566664 55677777 8899999988643
No 377
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.38 Score=55.38 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=76.1
Q ss_pred hHHHHHHhhcC-CCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhHHHHHHHH-
Q 003625 665 LKMLLPFLRSS-QHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDELWEELIKQ- 742 (807)
Q Consensus 665 ~~kl~~fL~~~-~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~lw~~ll~~- 742 (807)
...++.|+... ..-+-+.+.++|..++-.++++|.-.-+++++..+...+++ +.+++|.+--.+..+++|.+..--.
T Consensus 491 ~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~-e~yeeaLevL~~~~~~el~yk~ap~L 569 (911)
T KOG2034|consen 491 QREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQ-ENYEEALEVLLNQRNPELFYKYAPEL 569 (911)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHHhhhHH
Confidence 34566666664 46678899999999999999999999999999999888886 8899999888888777766543333
Q ss_pred hcCCchHHHHHHHhhcCCCCHHHHHhhC
Q 003625 743 CLNKPEMVGVLLEHTVGNLDPLYIVNMV 770 (807)
Q Consensus 743 ~~~~~~~~~~lL~~~~~~i~~~~vl~~l 770 (807)
....|..+.......++.++|..+...+
T Consensus 570 i~~~p~~tV~~wm~~~d~~~~~li~~~L 597 (911)
T KOG2034|consen 570 ITHSPKETVSAWMAQKDLDPNRLIPPIL 597 (911)
T ss_pred HhcCcHHHHHHHHHccccCchhhhHHHH
Confidence 3355666666665555555554444444
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.93 E-value=4.3 Score=40.14 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=67.2
Q ss_pred CCEEEEEecCCeEEEEecC-CCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCC-ceeEEecCCceEE-EE
Q 003625 64 ERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTD-EKMKFDYHRPMKA-IS 140 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~-~~~~~~~~~~v~~-v~ 140 (807)
..+++.|+..|.+.-.|.. |+.... ..-..+|.+-+.- -|++++.|...|.+++.+..+| ++..+..-..|.+ ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We-~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE-AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee-hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4578889999999988884 544322 1222333332222 4788999999999999999997 5555554443332 23
Q ss_pred eCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 141 LDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 141 ~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.+++ +..+.+|+.||+....|..
T Consensus 101 ~d~~-----~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 101 CDFD-----GGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred EcCC-----CceEEEecCCCcEEEeccc
Confidence 4566 7899999999999877654
No 379
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.91 E-value=0.89 Score=42.53 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhc-hHHHHHHhhcCC-CCCHHHHHHHHhcCCchhH----HHHHHhhcC-Ch
Q 003625 634 LHLYLHALFEVNPHAGKDFHDMQVELYADYD-LKMLLPFLRSSQ-HYTLEKAYEICVKRDLLRE----QVFILGRMG-NT 706 (807)
Q Consensus 634 ~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~-~~kl~~fL~~~~-~y~~~~al~~~~~~~~~~e----~~~L~~r~g-~~ 706 (807)
+.+|+..+...+-.....++..++.+.++.. ...|..||+... .=+.+-|..++.....++. ..=.+.|+| .|
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~ 92 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY 92 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH
Confidence 4479999888887788889999999998765 457777777754 2245556666665444433 455788999 88
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhc
Q 003625 707 KHALAVIINKLGDIEEAVEFVNMQ 730 (807)
Q Consensus 707 ~~Al~~~i~~l~d~~~A~~~~~~~ 730 (807)
++.+++++.+ |++-.|..|+++.
T Consensus 93 ~~iievLL~~-g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSK-GQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHc
Confidence 8888899986 9999999999874
No 380
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.90 E-value=6.7 Score=42.33 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=59.7
Q ss_pred EecCCEEEEE---------ecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE-
Q 003625 61 AVAERMIALG---------THAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF- 130 (807)
Q Consensus 61 s~~~~~la~g---------s~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~- 130 (807)
||+++++++. +..+.+.++|+....+..+......+....|||+|+.++.+. ++.+.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 4666666653 334678899997766666655567788899999999998886 57899998877654433
Q ss_pred -ecC-----------------CceEEEEeCCCCCCcCCCEEEEec
Q 003625 131 -DYH-----------------RPMKAISLDPDYTRKMSRRFVAGG 157 (807)
Q Consensus 131 -~~~-----------------~~v~~v~~~p~~~~~~~~~l~~g~ 157 (807)
.+. ..-.++-|+|+ ++.|+...
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-----~~~la~~~ 119 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-----SKYLAFLR 119 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TT-----SSEEEEEE
T ss_pred cccceeEEcCccceeccccccccccceEECCC-----CCEEEEEE
Confidence 220 11246789999 67666653
No 381
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.90 E-value=0.35 Score=53.18 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=86.1
Q ss_pred EEEecCCEEEEE---ecC-CeEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEe-CCCc--EEEEeccCCcee
Q 003625 59 CVAVAERMIALG---THA-GTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGS--VVINSLFTDEKM 128 (807)
Q Consensus 59 ~~s~~~~~la~g---s~d-g~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~--v~iwd~~~~~~~ 128 (807)
+|++++..++.- ... ..+.+++++... +..+.++.. .-+|+|||++|+-++ .||. |.+.|+.++...
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~ 275 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP 275 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCCcce
Confidence 588887765543 222 468888985433 334444543 347999999877554 4665 556677776655
Q ss_pred EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEe--CCc--
Q 003625 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWAN--DAG-- 201 (807)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~--d~~-- 201 (807)
.+.... .-..-.|+|+ +...+.+.+..|.-.+|...+.+.....+....+.-..-.|+ |+.++..+ +|.
T Consensus 276 ~Lt~~~gi~~~Ps~spd----G~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 276 RLTNGFGINTSPSWSPD----GSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred ecccCCccccCccCCCC----CCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCcee
Confidence 544433 2235567777 334445556667767776666665544444333322255666 67777653 444
Q ss_pred EEEEEcCCCce
Q 003625 202 VKVYDAANDQR 212 (807)
Q Consensus 202 v~iwd~~~~~~ 212 (807)
|.+.|+.++..
T Consensus 352 i~~~~~~~~~~ 362 (425)
T COG0823 352 IDKNDLASGGK 362 (425)
T ss_pred eEEeccCCCCc
Confidence 66666665553
No 382
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.88 E-value=0.68 Score=46.32 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=82.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeccC------CceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC
Q 003625 98 DLSFDVDGEYVGSCSDDGSVVINSLFT------DEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL 170 (807)
Q Consensus 98 ~l~~s~~g~~l~s~~~Dg~v~iwd~~~------~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~ 170 (807)
.++.+.+|+.||.. .|..|.|-..+. +++..-+... .-+-++|+|+ +..+|.+...|+|.++|..
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD-----~tlLa~a~S~G~i~vfdl~-- 73 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD-----CTLLAYAESTGTIRVFDLM-- 73 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC-----CcEEEEEcCCCeEEEEecc--
Confidence 35677888877665 566777776554 2232222222 6678999999 8999999999999999863
Q ss_pred CccceEeec-------CCcCeEEEEEe---------CCEEEEEeCCcEEEEEcCCC-----ceEEeeeCCCCCCCCCCCC
Q 003625 171 GYRDQVLHS-------GEGPVHVVKWR---------TSLIAWANDAGVKVYDAAND-----QRITFIERPRGSPRPELLL 229 (807)
Q Consensus 171 ~~~~~~~~~-------~~~~V~~l~~~---------~~~la~~~d~~v~iwd~~~~-----~~~~~i~~~~~~~~~~~~~ 229 (807)
|.....+.. -..+|.++.|- -.+++....|.++-|-+..+ +....+... .....-+
T Consensus 74 g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~---~~yp~Gi 150 (282)
T PF15492_consen 74 GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS---SHYPHGI 150 (282)
T ss_pred cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec---ccCCCce
Confidence 433333322 13456777665 25677777888887776432 122222221 1112236
Q ss_pred CeeeeeCC-CEEEEE
Q 003625 230 PHLVWQDD-TLLVIG 243 (807)
Q Consensus 230 ~~l~~~~~-~~l~~g 243 (807)
+++.+.++ ++|++|
T Consensus 151 ~~~vy~p~h~LLlVg 165 (282)
T PF15492_consen 151 NSAVYHPKHRLLLVG 165 (282)
T ss_pred eEEEEcCCCCEEEEe
Confidence 67777644 566665
No 383
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.84 E-value=7.6 Score=45.27 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHhCcccHHHHHhHhhHhhccC---hhhHHHHHHHHhhcC
Q 003625 433 YLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAHLR 472 (807)
Q Consensus 433 ~~~~l~~~~~~~~A~~~~~~~~~~~---~~~we~~i~~F~~~~ 472 (807)
.+++||..|+++.|..+|..++..+ ..+|...-..|.+.|
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG 187 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG 187 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc
Confidence 3566777777777777777777643 234555555554443
No 384
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.83 E-value=13 Score=44.99 Aligned_cols=155 Identities=10% Similarity=0.019 Sum_probs=85.4
Q ss_pred CChhhHHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccC---hhhHHHHHHHHhh
Q 003625 394 RDAEDHIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS---ASAWERWVFHFAH 470 (807)
Q Consensus 394 ~~~~d~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~---~~~we~~i~~F~~ 470 (807)
.-..|.++.+.-.|++++|+.++.........-.......+..+...+++++|..++.+.+..+ ...|-.....+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3456778888899999999998875442111112345556777788999999999998877643 3344444555555
Q ss_pred cCCCCcccccCcCC---CCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHH
Q 003625 471 LRQLPVLVPYMPTE---NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEA 547 (807)
Q Consensus 471 ~~~l~~L~~yl~~~---~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (807)
.++...-..++... .|.-.. +..+-..+... .+. ...+..+++.+...+........
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~-g~~-----------------~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRA-GRH-----------------WDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHC-CCH-----------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 55433322222111 121112 11111111111 122 23333344444444445555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q 003625 548 LAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 548 l~~ly~~~~~~~~al~~~~~~ 568 (807)
++.++...++.++|+..+-+.
T Consensus 156 la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhC
Confidence 777777788888888766543
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.74 E-value=0.098 Score=37.37 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc
Q 003625 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE 126 (807)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~ 126 (807)
...|.+++|+|....||.|+.+|.|.++.+...+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4469999999999999999999999999985443
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=2.1 Score=42.91 Aligned_cols=181 Identities=12% Similarity=0.121 Sum_probs=98.7
Q ss_pred EEEecCCEEEEE-----ecCCeEEEEecCC--CeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEE------------
Q 003625 59 CVAVAERMIALG-----THAGTVHILDFLG--NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVI------------ 119 (807)
Q Consensus 59 ~~s~~~~~la~g-----s~dg~I~i~d~~~--~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~i------------ 119 (807)
+|+++|.+|... ...|.|=|||... ..+..+..|.-.-..+.|.+||+.++.+.. -|..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 588899888654 2348899999852 336677888777788999999999887643 2322
Q ss_pred --------EeccCCcee---EEe--cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE----EEEcccCCccceEeecC-
Q 003625 120 --------NSLFTDEKM---KFD--YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY----LNSKKWLGYRDQVLHSG- 180 (807)
Q Consensus 120 --------wd~~~~~~~---~~~--~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~----l~~~~~~~~~~~~~~~~- 180 (807)
.|..++.+. ++. .+. .|..++..++ +...+-+-..|.-. +.-..-.+.....+.-.
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d-----gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD-----GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC-----CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence 222222221 111 122 5666666666 33322221111100 00000001111111111
Q ss_pred ------CcCeEEEEEe---CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEE
Q 003625 181 ------EGPVHVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKI 250 (807)
Q Consensus 181 ------~~~V~~l~~~---~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~v 250 (807)
...|-+|+.+ +-+.+++ ..+...+||..++..+.....+. .+.+.-..+.+.+++.+|.+.+
T Consensus 273 e~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d--------aaGva~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 273 EQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD--------AAGVAAAKGGFAVSSGQGRIIF 344 (366)
T ss_pred HHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc--------cccceeccCceEEecCCceEEe
Confidence 1346667766 3344445 46678899999999877543332 2333334566667778888887
Q ss_pred EEEe
Q 003625 251 ASIK 254 (807)
Q Consensus 251 w~~~ 254 (807)
+.-.
T Consensus 345 ~s~~ 348 (366)
T COG3490 345 YSRA 348 (366)
T ss_pred cccc
Confidence 7443
No 387
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.57 E-value=1.9 Score=41.77 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=86.2
Q ss_pred EEEecC-CEEEEEecCCeEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCCC------cEEEE---eccC-
Q 003625 59 CVAVAE-RMIALGTHAGTVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDG------SVVIN---SLFT- 124 (807)
Q Consensus 59 ~~s~~~-~~la~gs~dg~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg------~v~iw---d~~~- 124 (807)
+++..| ..|.++...+.|.+|++.+.. ..++. --+.|..+.++..|++++|--.+. .+|+| ....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 344445 566666788899999986322 34443 337899999999999999965432 45553 3221
Q ss_pred --Cce-----------------------eEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc---cceE
Q 003625 125 --DEK-----------------------MKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY---RDQV 176 (807)
Q Consensus 125 --~~~-----------------------~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~---~~~~ 176 (807)
..+ ..+...+++.|++-.|. .|+ +++|+.+ .+.+|....... ....
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~----tG~-LlVg~~~-~l~lf~l~~~~~~~~~~~~ 174 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPV----TGN-LLVGCGN-KLVLFTLKYQTIQSEKFSF 174 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCC----CCC-EEEEcCC-EEEEEEEEEEEEecccccE
Confidence 111 11122226678888887 344 4444443 788886543221 1111
Q ss_pred e--------ecCCcCeEEEEEeCCEEEEEeCCcEEEEEcC
Q 003625 177 L--------HSGEGPVHVVKWRTSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 177 ~--------~~~~~~V~~l~~~~~~la~~~d~~v~iwd~~ 208 (807)
+ ....-....+++.+.++|..++..+++..+.
T Consensus 175 lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 175 LDFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred EechhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 1 1112346778888999999999998887653
No 388
>PHA02713 hypothetical protein; Provisional
Probab=94.57 E-value=1.1 Score=51.55 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=92.8
Q ss_pred EEecCCEEEEEecC------CeEEEEecCCCeeEEecCCCcce-eEEEEcCCCCEEEEEeCCC-----cEEEEeccCCce
Q 003625 60 VAVAERMIALGTHA------GTVHILDFLGNQVKEFPAHTAAV-NDLSFDVDGEYVGSCSDDG-----SVVINSLFTDEK 127 (807)
Q Consensus 60 ~s~~~~~la~gs~d------g~I~i~d~~~~~~~~~~~h~~~V-~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~~~~ 127 (807)
...++...++|+.+ ..+..||...+.-.....-..+. ......-+|...+.||.+| .+..||..+..-
T Consensus 300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 33467777888754 34677887544322221111111 1111233577777787764 377888776543
Q ss_pred eEE---ecCC-ceEEEEeCCCCCCcCCCEEEEecCCC-----------------------eEEEEEcccCC-ccceEeec
Q 003625 128 MKF---DYHR-PMKAISLDPDYTRKMSRRFVAGGLAG-----------------------HLYLNSKKWLG-YRDQVLHS 179 (807)
Q Consensus 128 ~~~---~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg-----------------------~v~l~~~~~~~-~~~~~~~~ 179 (807)
... ...+ ....++. + ++..++||.++ .+..|+...+. .....+..
T Consensus 380 ~~~~~mp~~r~~~~~~~~--~-----g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVL--D-----QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred EECCCCCcccccccEEEE--C-----CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 222 2222 2222222 3 57888887653 24555543111 11111111
Q ss_pred CCcCeEEEEEeCCEEEEE-eC------CcEEEEEcCC-CceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCC--cE
Q 003625 180 GEGPVHVVKWRTSLIAWA-ND------AGVKVYDAAN-DQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGT--YI 248 (807)
Q Consensus 180 ~~~~V~~l~~~~~~la~~-~d------~~v~iwd~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~--~i 248 (807)
.......+.+.|.+.+.| .+ ..+..||..+ .+....-..+. ......++-.++.+.++| .++ ++
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-----~r~~~~~~~~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-----RLSALHTILHDNTIMMLHCYESYMLQ 527 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-----ccccceeEEECCEEEEEeeecceeeh
Confidence 122222344456655555 22 2366788887 55443211111 112233444588888888 666 67
Q ss_pred EEEEEeeCCCc
Q 003625 249 KIASIKTNQSN 259 (807)
Q Consensus 249 ~vw~~~~~~~~ 259 (807)
..||+.+++..
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88888777644
No 389
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.49 E-value=7.5 Score=42.43 Aligned_cols=158 Identities=21% Similarity=0.154 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHccCcc--hhhHhhhccchHHHHHHHHHH-HhcChhHHHHHhhhcCCCCChH--
Q 003625 541 TDALKEALAELYVIDGHYEKAFSLYADLMKPY--IFDFIENHNLHDAIREKVVQL-MLLDCKRAVSLLIQNKDLITPS-- 615 (807)
Q Consensus 541 ~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~l-~~~~~~~~~~ll~~~~~~~~~~-- 615 (807)
....+..++.+|...|++++|+.++.++.... .... .........+..+ -.-+.++++..|-+-.. ..|.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~ 214 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQALARGDLDAARALLKKALA-ADPQCV 214 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-HCcCCH
Confidence 34466778889999999999998887653211 0000 0000001111111 12344555555543111 1111
Q ss_pred ---HHH-HHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh-chHHHHHHhhcCCCCCHHHHHHHHhcC
Q 003625 616 ---EVV-TQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-DLKMLLPFLRSSQHYTLEKAYEICVKR 690 (807)
Q Consensus 616 ---~vi-~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~-~~~kl~~fL~~~~~y~~~~al~~~~~~ 690 (807)
..+ ..+... +.......+++.+...++.......+.++..|++. +.++...+++. +++.-+..
T Consensus 215 ~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~--------~~~~~p~~ 282 (389)
T PRK11788 215 RASILLGDLALAQ----GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR--------ALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHHHC----CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHhCCCc
Confidence 111 112111 23444556777777666544345567777777753 34444554443 22222222
Q ss_pred CchhHHHHHHhhcCChHHHHHHHHH
Q 003625 691 DLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 691 ~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
......+-++.+.|++++|+..+-.
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2334567778888888888887754
No 390
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.46 E-value=5.4 Score=50.68 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=37.9
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhcc
Q 003625 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~ 456 (807)
..++++|+|++|+..++.... .+.. .......++-+...|++++|.+.+.+.+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTD-SYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 346789999999999875432 1111 123334466678889999999998888753
No 391
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.28 E-value=0.12 Score=33.83 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=28.0
Q ss_pred EEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 129 KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 129 ~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
.+..+. .|.++.|+|. +..+++|+.||.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~-----~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPD-----GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCC-----CCEEEEecCCCeEEEcC
Confidence 345556 8999999998 78999999999999984
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.97 E-value=3.7 Score=45.50 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=72.8
Q ss_pred CCCcceeEEEEcCC----CCEEEEEeCCCcEEEEeccC-----Cce-eE--EecCC--c--eEEEEeCCCCCCcCCCEEE
Q 003625 91 AHTAAVNDLSFDVD----GEYVGSCSDDGSVVINSLFT-----DEK-MK--FDYHR--P--MKAISLDPDYTRKMSRRFV 154 (807)
Q Consensus 91 ~h~~~V~~l~~s~~----g~~l~s~~~Dg~v~iwd~~~-----~~~-~~--~~~~~--~--v~~v~~~p~~~~~~~~~l~ 154 (807)
+.-..|..++|.|- ...+++......|.||.+.- ++. .. -.... | ...+.|||. ...++
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-----~~iL~ 128 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-----KAILT 128 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-----CceEE
Confidence 33346899999985 33677788889999998862 221 11 11111 2 357889998 55555
Q ss_pred EecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE--eCCcEEEEEcC
Q 003625 155 AGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAA 208 (807)
Q Consensus 155 ~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~--~d~~v~iwd~~ 208 (807)
+-.....-.+++...++..++.--...|-|.|.+|. |+.++.+ +.=.-.|||-.
T Consensus 129 VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 129 VLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 555444445566666666665555678999999999 7766666 33345778754
No 393
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=93.87 E-value=14 Score=41.76 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=51.9
Q ss_pred HHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHH
Q 003625 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERW 464 (807)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~ 464 (807)
+++.+.+.|+|++||+..+......--...+...-++.++.-|++++|...+..++..++..|.+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 356788999999999998765442111245777888999999999999999999998887777654
No 394
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.85 E-value=17 Score=42.62 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 542 DALKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 542 ~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
...+..+..+|...|++++|+.++-+.
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667788888899999999888764
No 395
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.60 E-value=1.8 Score=47.20 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=79.7
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE-EEEcccC--
Q 003625 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY-LNSKKWL-- 170 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~-l~~~~~~-- 170 (807)
.|++++|+++..-++.|...|.|.+|.....+... .... +-....+.+- -.....+.+. +-++.-.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF---------SLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-----------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc---------cccCCCcceEEehhhCCccc
Confidence 58999999998899999999999999876533221 0000 1111111111 0111112221 1111000
Q ss_pred --C-ccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEEEcCCCceEEeeeCCC--CCCCCCCCCCeeeee------CC
Q 003625 171 --G-YRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVYDAANDQRITFIERPR--GSPRPELLLPHLVWQ------DD 237 (807)
Q Consensus 171 --~-~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~--~~~~~~~~~~~l~~~------~~ 237 (807)
+ .+...++...++|++++.+ =-|+|.+ .+|.+.|.|++....+..-.... .......++.++.|. ++
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 1 2334455568999999998 3677777 68999999999887776522222 223334456678785 22
Q ss_pred ---CEEEEE-eCCcEEEEEEee
Q 003625 238 ---TLLVIG-WGTYIKIASIKT 255 (807)
Q Consensus 238 ---~~l~~g-~d~~i~vw~~~~ 255 (807)
-.+.+| ..|.+.+|.+..
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEec
Confidence 467787 789999999864
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.50 E-value=3.7 Score=44.43 Aligned_cols=134 Identities=13% Similarity=0.057 Sum_probs=77.2
Q ss_pred EecCCeEEEEec-CCCeeEEecCCCcceeEEEEcCCC--------CEEEEEeCCCcEEEEeccC--CceeEEecCCceEE
Q 003625 70 GTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDG--------EYVGSCSDDGSVVINSLFT--DEKMKFDYHRPMKA 138 (807)
Q Consensus 70 gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~l~~s~~g--------~~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~~v~~ 138 (807)
|+....++-.|+ .|+.+..+.-|...| +.+.|.. ..|+..|..+ |.--|.+- .++........++-
T Consensus 486 g~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccc-eEEecccccCCceeeeeehhcccc
Confidence 444455555566 366677777776653 5677742 3344444444 33334433 33333222222222
Q ss_pred EEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcC
Q 003625 139 ISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 139 v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~ 208 (807)
-.|+...+ ..+.++++|+..|.|++||+. ..+..+.+.+-...|..|..+ |.++.++..+.+-+.|++
T Consensus 563 n~Fss~~t-TesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 563 NKFSSGMT-TESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccccc-ccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 23332211 124799999999999999874 223444556656678777776 777777666777788876
No 397
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.42 E-value=30 Score=44.07 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=88.8
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccC--cch------hhHhhhccchHHHHHHHHHHHhcC
Q 003625 526 PVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMK--PYI------FDFIENHNLHDAIREKVVQLMLLD 597 (807)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~--~~~------~~~i~~~~~~~~~~~~~~~l~~~~ 597 (807)
..+..+++.+...+.....+..|+.+|...|++++|+.++.+.-. ++- ..++.....+..+..--..+-.-+
T Consensus 287 ~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 287 KAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 333444444444555666778889999999999999998876421 211 111111111111111111223345
Q ss_pred hhHHHHHhhhcCCCCChH--HHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHHHHhhcC
Q 003625 598 CKRAVSLLIQNKDLITPS--EVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLRSS 675 (807)
Q Consensus 598 ~~~~~~ll~~~~~~~~~~--~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~~fL~~~ 675 (807)
.++++..+-+-.. +.|. ...-.|-..-...+.......+++..+..++... ..+..+..+|....+++.+.|++.-
T Consensus 367 ~~eA~~~~~~Al~-~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQ-VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 5666666544111 1121 1111111100011234555577888887777543 4455666677766777777777652
Q ss_pred CCCCHH---HHHHHHhcCCchhHHHHHHhhcCChHHHHHH
Q 003625 676 QHYTLE---KAYEICVKRDLLREQVFILGRMGNTKHALAV 712 (807)
Q Consensus 676 ~~y~~~---~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~ 712 (807)
..-... ....... ...+...+-++...|++++|+..
T Consensus 445 ~~~~~~~~~~~~~~l~-~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 445 SASQRRSIDDIERSLQ-NDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred CHHHHHHHHHHHHHhh-hhHHHHHHHHHHHCCCHHHHHHH
Confidence 211111 0011110 12233455556666666666654
No 398
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.25 E-value=3.5 Score=46.78 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=54.1
Q ss_pred CcEEEEeccC----C-cee-EEecCCceEEEEeCCCCCCcCCCE-EEEecCCCeEEEEEcccCCc-----------cceE
Q 003625 115 GSVVINSLFT----D-EKM-KFDYHRPMKAISLDPDYTRKMSRR-FVAGGLAGHLYLNSKKWLGY-----------RDQV 176 (807)
Q Consensus 115 g~v~iwd~~~----~-~~~-~~~~~~~v~~v~~~p~~~~~~~~~-l~~g~~dg~v~l~~~~~~~~-----------~~~~ 176 (807)
+.|.+.|..+ + .+. .+...+....++++|+ +++ ++++..+++|.+.|..-... ....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD-----GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD-----GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCC-----CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 4477777766 2 222 3555567789999999 665 45556688899987642111 0111
Q ss_pred eecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCC
Q 003625 177 LHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 177 ~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~ 209 (807)
..-..+|. ..+|+ |...++- -|..|..|++.+
T Consensus 371 vevGlGPL-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPL-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcc-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 22234443 45677 4444444 699999999876
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.16 E-value=0.24 Score=35.42 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=27.5
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
+|.+++|+|. ...+|.|+.+|.|.++...|
T Consensus 13 ~v~~~~w~P~-----mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 13 RVSCMSWCPT-----MDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cEEEEEECCC-----CCEEEEEECCCeEEEEECCC
Confidence 7999999999 79999999999999997754
No 400
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.14 E-value=4.5 Score=41.77 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=87.5
Q ss_pred cCCCCEEEEEeCCCcEEEEeccC-CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccce----E
Q 003625 102 DVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQ----V 176 (807)
Q Consensus 102 s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~----~ 176 (807)
...++.|+.|..+| +.+++... ..........+|..+...|+ -+.+++-+ ||.+.+++......... .
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~-----~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPE-----LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecc-----cCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 44688999999988 89998833 33333333336999999998 34444443 38999997543221110 0
Q ss_pred ---------eecCCcCeEEEEE----e-CCEEEEEeCCcEEEEEcCCC-----ceEEeeeCCCCCCCCCCCCCeeeeeCC
Q 003625 177 ---------LHSGEGPVHVVKW----R-TSLIAWANDAGVKVYDAAND-----QRITFIERPRGSPRPELLLPHLVWQDD 237 (807)
Q Consensus 177 ---------~~~~~~~V~~l~~----~-~~~la~~~d~~v~iwd~~~~-----~~~~~i~~~~~~~~~~~~~~~l~~~~~ 237 (807)
.......+...+- . +..++.+..+.|.+|..... ...+.+..+. .+..++|. +
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~-------~~~~i~~~-~ 148 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD-------PPSSIAFL-G 148 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC-------CcEEEEEe-C
Confidence 1111223444441 1 35677777779999988753 3444554443 35678887 6
Q ss_pred CEEEEEeCCcEEEEEEeeCCC
Q 003625 238 TLLVIGWGTYIKIASIKTNQS 258 (807)
Q Consensus 238 ~~l~~g~d~~i~vw~~~~~~~ 258 (807)
..+++|..+...+.|+.++..
T Consensus 149 ~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 149 NKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred CEEEEEeCCceEEEecCCCCc
Confidence 677788677788889886653
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.12 E-value=13 Score=38.88 Aligned_cols=152 Identities=13% Similarity=0.159 Sum_probs=73.9
Q ss_pred cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeEE--ecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc
Q 003625 90 PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF--DYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (807)
Q Consensus 90 ~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~--~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (807)
..-.+.+..+.-+++|+++++++......-|+--...-..+ ...+.|.++.|.|+ +...+++ ..|.+++-+.
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-----~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-----GNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-----S-EEEEE-TTTEEEEEE-
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-----CCEEEEe-CCcEEEEccC
Confidence 44556788888999999888776555556777543322333 33349999999999 5555544 7788877651
Q ss_pred ccCCcc--ceEe--ecCCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEE
Q 003625 168 KWLGYR--DQVL--HSGEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLL 240 (807)
Q Consensus 168 ~~~~~~--~~~~--~~~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l 240 (807)
.-.... .... ....-.+..++|. +.+.+++..+++ +.....++.=....... ....-...+.| .++.-+
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~---~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGE---NVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGT---TSSS---EEEEEETTEEE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECcccc---CCCCceEEEEEcCCCceE
Confidence 101111 0001 1122237888998 466666666654 55555554333221111 00112345666 466889
Q ss_pred EEEeCCcEEEE
Q 003625 241 VIGWGTYIKIA 251 (807)
Q Consensus 241 ~~g~d~~i~vw 251 (807)
++|.+|.+--|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 99999887544
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.09 E-value=0.2 Score=48.43 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=63.0
Q ss_pred EEEEeCCCcEEEEeccCCce--eEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCe
Q 003625 108 VGSCSDDGSVVINSLFTDEK--MKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPV 184 (807)
Q Consensus 108 l~s~~~Dg~v~iwd~~~~~~--~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V 184 (807)
+...+.||.|+-++++..+. ..-..+. ...-+.+ +..+++|+.+|.|.+|.....+.....+.....+|
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~--------~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA--------SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc--------CceEEeecccceEEEecCCccchHHHhhhcccccc
Confidence 45567788888887765332 1222222 1111122 46799999999999997654444444444444444
Q ss_pred EEEEEe---CCEEEEE-eCCcEEEEEcCCCceEEeeeCCC
Q 003625 185 HVVKWR---TSLIAWA-NDAGVKVYDAANDQRITFIERPR 220 (807)
Q Consensus 185 ~~l~~~---~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~ 220 (807)
.+.--. +.+..++ .|+.|+.|++.-++.+..+..+.
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 444333 2344444 79999999999888877655443
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=20 Score=41.10 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=48.8
Q ss_pred EEEecCCEEEEEecC----------CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce
Q 003625 59 CVAVAERMIALGTHA----------GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 127 (807)
Q Consensus 59 ~~s~~~~~la~gs~d----------g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (807)
+++|.|.-||+.-++ -.|+||+..|..+.++.-..+.+-.+.|+.+. .|++...||+++++++....+
T Consensus 39 a~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 39 ACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred EecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhh
Confidence 455555555554433 45899999999876665544477789999765 466778999999999876443
No 404
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=18 Score=40.38 Aligned_cols=127 Identities=15% Similarity=0.222 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHH-HHhhcCC-CCc-ccccCcCCCCCCCHHHHHHHHHH-Hh-c
Q 003625 428 EVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVF-HFAHLRQ-LPV-LVPYMPTENPRLRDTAYEVALVA-LA-T 502 (807)
Q Consensus 428 ~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~-~F~~~~~-l~~-L~~yl~~~~~~l~~~~~~~~L~~-~~-~ 502 (807)
.+...+++.++..++|++|...|..+..++....+.-++ -|+.+.. +.. +.. ..|..+..-|+.+.+. |. -
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q----~v~~v~e~syel~yN~Ac~~i 186 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ----SVPEVPEDSYELLYNTACILI 186 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH----hccCCCcchHHHHHHHHHHHH
Confidence 366778888999999999999998887766555554333 3332221 111 111 1222334567777662 21 1
Q ss_pred CCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCCh-H-------HHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 503 NPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMT-D-------ALKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 503 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-------~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
.. .++-+.++.. .+....+++.+...... + ...=.|++.+...|+-++|..+|...
T Consensus 187 ~~---gky~qA~elL-------~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 187 EN---GKYNQAIELL-------EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred hc---ccHHHHHHHH-------HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11 1222222221 23334445555433322 1 12335888999999999999998874
No 405
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.80 E-value=1.4 Score=46.92 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCceEEEEecCCEEEEEecCCeEEEEecCCCe-eEEecCCCc--ceeEEEEcCCCCEEEEEeCCCcEEEEeccC--Ccee
Q 003625 54 NDAASCVAVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTA--AVNDLSFDVDGEYVGSCSDDGSVVINSLFT--DEKM 128 (807)
Q Consensus 54 ~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~--~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~--~~~~ 128 (807)
+++++++++-+..+++|. ++.|.+|++.... +.....+.. .++++. ..+++++.|.....+.++..+. ....
T Consensus 88 ~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~ 164 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLI 164 (321)
T ss_dssp SS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EE
T ss_pred cCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEE
Confidence 355788777666665554 4889999995444 333323333 455444 4477999999888888875543 3333
Q ss_pred EE--ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 129 KF--DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 129 ~~--~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.+ .... .++++.+-++ ++.+++++.+|.+.++...
T Consensus 165 ~va~d~~~~~v~~~~~l~d-----~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 165 LVARDYQPRWVTAAEFLVD-----EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEESS-BEEEEEEEE-S-----SSEEEEEETTSEEEEEEE-
T ss_pred EEEecCCCccEEEEEEecC-----CcEEEEEcCCCeEEEEEEC
Confidence 33 3333 7899999877 4699999999999988653
No 406
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.80 E-value=22 Score=40.94 Aligned_cols=163 Identities=14% Similarity=0.083 Sum_probs=93.7
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce---eEEecCC---ceEEEEeCCCCC-CcCCCEEEEecC-CC---e
Q 003625 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK---MKFDYHR---PMKAISLDPDYT-RKMSRRFVAGGL-AG---H 161 (807)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~---~~~~~~~---~v~~v~~~p~~~-~~~~~~l~~g~~-dg---~ 161 (807)
.+.|.++.|.+++..+++...+|.|.+||...+.. ....... -+.+ .|-+++. ..+..++++-+. ++ .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 56788999999999999999999999999933221 1121111 2222 4444433 112344444333 32 2
Q ss_pred EEEEEcccCCccceEeec---CCcCeEEEEE--e-CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee
Q 003625 162 LYLNSKKWLGYRDQVLHS---GEGPVHVVKW--R-TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ 235 (807)
Q Consensus 162 v~l~~~~~~~~~~~~~~~---~~~~V~~l~~--~-~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~ 235 (807)
.+++.......+...+.. +........| . |.+..- .++.|.+|++..-+...++..+..........-++.-.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 455554222333333331 1122233333 3 554444 78899999999888888877763221111122233334
Q ss_pred CCCEEEEEeCCcEEEEEEeeCC
Q 003625 236 DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 236 ~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
...+++.+.+++|++.|+.-..
T Consensus 287 s~nRvLLs~~nkIyLld~~~~s 308 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFES 308 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhh
Confidence 6778888999999999987544
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.44 E-value=5.2 Score=44.38 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=95.2
Q ss_pred ceeEEEEcCCCCEE-EEEe--CCCcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC
Q 003625 95 AVNDLSFDVDGEYV-GSCS--DDGSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (807)
Q Consensus 95 ~V~~l~~s~~g~~l-~s~~--~Dg~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (807)
+|..++|. ||+.+ +|.- .+|.++.- ....+..-.-|.++.|.|-.......++|+- ....|.+|......
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfG-----ds~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFG-----DSKVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPST 93 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccC-----CccEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCc
Confidence 78899997 55544 3332 23333322 2222332337899999997443333455554 45689999754322
Q ss_pred -ccceEeec----C--CcC--eEEEEEeC--CEEEEEeCCcE-EEEEcCC--CceEEeeeCCCCCCCCCCCCCeeeee-C
Q 003625 172 -YRDQVLHS----G--EGP--VHVVKWRT--SLIAWANDAGV-KVYDAAN--DQRITFIERPRGSPRPELLLPHLVWQ-D 236 (807)
Q Consensus 172 -~~~~~~~~----~--~~~--V~~l~~~~--~~la~~~d~~v-~iwd~~~--~~~~~~i~~~~~~~~~~~~~~~l~~~-~ 236 (807)
...+.+.. . .-+ -.++.|++ .+++.-+...+ .+++++. .+....++.. ..+.|.+|. +
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~-------G~IhCACWT~D 166 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS-------GLIHCACWTKD 166 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-------ceEEEEEecCc
Confidence 11111111 0 111 24567884 45554432222 3455543 2332333222 357889995 8
Q ss_pred CCEEEEEeCCc--EEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCc-eEEEE
Q 003625 237 DTLLVIGWGTY--IKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDC-LVVLA 299 (807)
Q Consensus 237 ~~~l~~g~d~~--i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~-l~vl~ 299 (807)
|+.|+++-+.. -++||-..... .....-..|..+..||.|....|. ++|.+
T Consensus 167 G~RLVVAvGSsLHSyiWd~~qKtL------------~~CsfcPVFdv~~~Icsi~AT~dsqVAvaT 220 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQKTL------------HRCSFCPVFDVGGYICSIEATVDSQVAVAT 220 (671)
T ss_pred CCEEEEEeCCeEEEEEecCchhhh------------hhCCcceeecCCCceEEEEEeccceEEEEe
Confidence 99999996666 46776443220 011234467777888888887744 44443
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.30 E-value=4.9 Score=46.27 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=107.5
Q ss_pred cCCEEEEEecCC------eEEEEecCCCeeEEecC--CCcceeEEEEcCCCCEEEEEeCC-C-----cEEEEeccCCcee
Q 003625 63 AERMIALGTHAG------TVHILDFLGNQVKEFPA--HTAAVNDLSFDVDGEYVGSCSDD-G-----SVVINSLFTDEKM 128 (807)
Q Consensus 63 ~~~~la~gs~dg------~I~i~d~~~~~~~~~~~--h~~~V~~l~~s~~g~~l~s~~~D-g-----~v~iwd~~~~~~~ 128 (807)
.+..+++|+.++ .+..+|...+.-..... +...-.+++.. +|...++||.| | ++..||..++.-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 356778888774 67778875442111111 11222333333 46777888888 3 4667777765422
Q ss_pred E---EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe-----EEEEEcccCC-ccceEeecCCcCeEEEEEeCCEEEEE-
Q 003625 129 K---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-----LYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSLIAWA- 197 (807)
Q Consensus 129 ~---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-----v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~~~~la~~- 197 (807)
. +...+ ....+.+ +|...++||.||. +..||...+. ...............+.+.|.+.+.+
T Consensus 363 ~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcC
Confidence 2 23333 2222222 2689999999985 4445443111 11111111223344455557766655
Q ss_pred eC------CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCc-----EEEEEEeeCCCcCCCCcc
Q 003625 198 ND------AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY-----IKIASIKTNQSNVANGTY 265 (807)
Q Consensus 198 ~d------~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~-----i~vw~~~~~~~~~~~~~~ 265 (807)
.+ .++..||..++.....-+-.... ....++.-++.+.++| .++. |..||..+++....
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-----~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---- 506 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRR-----SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV---- 506 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCccccc-----ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEc----
Confidence 23 34788888887655432111111 1112344477777777 5542 66677666553211
Q ss_pred ccCCcceEEEEEEeeeceEEEeeeecCCceEEEEe
Q 003625 266 RHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY 300 (807)
Q Consensus 266 ~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~vl~~ 300 (807)
........-.|++..++.+.+++.
T Consensus 507 -----------~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 507 -----------APMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -----------ccCccccccccEEEECCEEEEEec
Confidence 112223344567777777766664
No 409
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.17 E-value=6 Score=45.65 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=82.9
Q ss_pred cceeEEEEcCCCCEEEEEe------CCCcEEEE--eccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCe-EEE
Q 003625 94 AAVNDLSFDVDGEYVGSCS------DDGSVVIN--SLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGH-LYL 164 (807)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~------~Dg~v~iw--d~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~-v~l 164 (807)
..+.+.+++|+|+.++... .|+.-.+| +.. +....+......+.-.|+|+ ++.+.+...... +++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~~t~PsWspD-----G~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHSLTRPSWSLD-----ADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCCCCCceECCC-----CCceEEEecCcceEEE
Confidence 3678889999999987765 24444444 542 22233322235778899998 676666543212 222
Q ss_pred EEcc---------cCCccceEeecCCcCeEEEEEe--CCEEEEEeCCcEEE---EEcCCCceEEeeeCCCC-CCCCCCCC
Q 003625 165 NSKK---------WLGYRDQVLHSGEGPVHVVKWR--TSLIAWANDAGVKV---YDAANDQRITFIERPRG-SPRPELLL 229 (807)
Q Consensus 165 ~~~~---------~~~~~~~~~~~~~~~V~~l~~~--~~~la~~~d~~v~i---wd~~~~~~~~~i~~~~~-~~~~~~~~ 229 (807)
.... ..+..... ...+.|..+.|+ |..++...++.|.+ -....|. ..+..+.. ........
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCcc
Confidence 1110 01111111 235679999999 78777776676655 3323333 12211110 11112224
Q ss_pred CeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 230 PHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 230 ~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
..+.|.++..|+++ .++...+|.+.-.+
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCC
Confidence 67889766656676 44445567666554
No 410
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=91.95 E-value=15 Score=37.08 Aligned_cols=160 Identities=11% Similarity=0.103 Sum_probs=80.0
Q ss_pred EecCCCcceeEEEEcCCCCE-EEEEeCCCcEEEEeccCCceeEEecC--CceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 88 EFPAHTAAVNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMKFDYH--RPMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 88 ~~~~h~~~V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~~~~~--~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
.+.+-...++.++|+|++.. +++....+.|...+..+..+.++... .-.-.|++..+ +.++++.-.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~-----~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGN-----GRYVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-ST-----TEEEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECC-----CEEEEEEcCCCcEEE
Confidence 45555556999999998665 55555677787778754434444443 37788888766 566666666888887
Q ss_pred EEcccCCcc-----ceEee-----cCCcCeEEEEEe---CCEEEEEeCCcEEEEEcCC---CceEEeeeCC--CCCCCCC
Q 003625 165 NSKKWLGYR-----DQVLH-----SGEGPVHVVKWR---TSLIAWANDAGVKVYDAAN---DQRITFIERP--RGSPRPE 226 (807)
Q Consensus 165 ~~~~~~~~~-----~~~~~-----~~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~---~~~~~~i~~~--~~~~~~~ 226 (807)
++..-.+.. ...+. .++..+-+++|+ ++++++-......+|.+.. ...+...... .......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 765322211 11111 245568999999 3555555566667777654 2222211110 0001111
Q ss_pred CCCCeeeee--CCCEEEEE-eCCcEEEEE
Q 003625 227 LLLPHLVWQ--DDTLLVIG-WGTYIKIAS 252 (807)
Q Consensus 227 ~~~~~l~~~--~~~~l~~g-~d~~i~vw~ 252 (807)
.-+..+++. .+++++.+ .+..+-++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 123455554 45566666 555666665
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.85 E-value=6.1 Score=45.54 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=93.6
Q ss_pred EEEecCCEEEEEecC-C-----eEEEEecCCCe---eEEecCCCcceeEEEEcCCCCEEEEEeCCCc-----EEEEeccC
Q 003625 59 CVAVAERMIALGTHA-G-----TVHILDFLGNQ---VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGS-----VVINSLFT 124 (807)
Q Consensus 59 ~~s~~~~~la~gs~d-g-----~I~i~d~~~~~---~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~-----v~iwd~~~ 124 (807)
....++...++|+.+ | ++..||..... +..+.......... .-+|...+.||.||. |-.||..+
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCC
Confidence 344577788899998 3 56677775443 11111121122111 235888899999875 66677766
Q ss_pred CceeEE---ecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe------EEEEEcccCC-ccceEeecCCcCeEEEEEeCCE
Q 003625 125 DEKMKF---DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH------LYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTSL 193 (807)
Q Consensus 125 ~~~~~~---~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~------v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~~~~ 193 (807)
.+-... ...+ ....+.+ ++...++||.+|. +..||...+. .....+............++.+
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~-------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~i 478 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVL-------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKI 478 (571)
T ss_pred CcccccCCCCcceeeeEEEEE-------CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEE
Confidence 443322 2222 2222333 2688899987664 3444433111 1111111112222234444666
Q ss_pred EEEE-eCC-----cEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCc-----EEEEEEeeCC
Q 003625 194 IAWA-NDA-----GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY-----IKIASIKTNQ 257 (807)
Q Consensus 194 la~~-~d~-----~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~-----i~vw~~~~~~ 257 (807)
.+.+ .|+ +|..||..+.+....-. .........++-.++...++| ++|. |..||..++.
T Consensus 479 YvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-----m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDPETNQWTMVAP-----MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEECCccCCCccceEEEEcCCCCceeEccc-----CccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 6655 343 37788888877654311 111111222333467777777 5543 6677666555
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.75 E-value=2.3 Score=48.57 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=65.9
Q ss_pred ecCCEEEEEecCCeEEEEecCCCee---EEecCCCcceeEEEEc--CCCCEEEEEeCCCcEEEEeccC------C----c
Q 003625 62 VAERMIALGTHAGTVHILDFLGNQV---KEFPAHTAAVNDLSFD--VDGEYVGSCSDDGSVVINSLFT------D----E 126 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~~~~~~---~~~~~h~~~V~~l~~s--~~g~~l~s~~~Dg~v~iwd~~~------~----~ 126 (807)
..++..++.+....+.|||..+... ..+ ...+.|.++.|. |+|+.+++.|-.+.|.++.-.. + .
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3555555666667899999976553 222 346789999986 7899999999999999986421 1 1
Q ss_pred eeE--EecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc
Q 003625 127 KMK--FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (807)
Q Consensus 127 ~~~--~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (807)
+.. +..++ +|.+..|.++ |. +++|+++ .+.+++.
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~-----G~-LvV~sGN-qlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKD-----GT-LVVGSGN-QLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecC-----Ce-EEEEeCC-EEEEECC
Confidence 222 23333 8999999998 44 4444432 6777755
No 413
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.72 E-value=20 Score=42.12 Aligned_cols=57 Identities=7% Similarity=-0.094 Sum_probs=37.7
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChh
Q 003625 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~ 459 (807)
..+++.|+|++|+...+.... .++ ......-+.-++..++|++|...|.+.+..++.
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 457889999999999865332 112 112223344456679999999999888865443
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.66 E-value=5.1 Score=45.91 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=66.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee---EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc-cC
Q 003625 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM---KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK-WL 170 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~---~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~-~~ 170 (807)
..+-+.-|.-++..+.-+....+.|||...+... .+..+.+|.++.|.... +++.+++.|-.+.|.++... .+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEccchh
Confidence 4455555554554444444457999999987643 23334599999996531 26777777777888888542 11
Q ss_pred ----Cc---cceE--eecCC-cCeEEEEEe-CCEEEEEeCCcEEEEEc
Q 003625 171 ----GY---RDQV--LHSGE-GPVHVVKWR-TSLIAWANDAGVKVYDA 207 (807)
Q Consensus 171 ----~~---~~~~--~~~~~-~~V~~l~~~-~~~la~~~d~~v~iwd~ 207 (807)
+. .... +..++ .+|.+..|- +..++.++++.+.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 11 1111 22333 678888888 45555566677777764
No 415
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.56 E-value=3.4 Score=40.56 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=78.1
Q ss_pred HHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCc
Q 003625 400 IAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPV 476 (807)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~ 476 (807)
-.-++++|+|.+|+...+.... .+..........+...+..++|+.|...+..++..-+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----------------- 74 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----------------- 74 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------------
Confidence 3568899999999988754221 22233445556677788999999998886665542111
Q ss_pred ccccCcCCCCCCCHHHHHHHHHHHhcC------CCC-------hHHHHHHhhcCCcCCCC--hHHHHHHHHHhhhcCCCh
Q 003625 477 LVPYMPTENPRLRDTAYEVALVALATN------PSF-------HKYLLSTVKSWPPVIYS--ALPVISAIEPQLNSSSMT 541 (807)
Q Consensus 477 L~~yl~~~~~~l~~~~~~~~L~~~~~~------~~~-------~~~~~~~i~~~~~~l~~--~~~~~~~~~~~~~~~~~~ 541 (807)
++..+...|...+.+|-.. ..| ...|..+|+++|..-|- +...+..+.+++
T Consensus 75 --------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l------ 140 (203)
T PF13525_consen 75 --------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL------ 140 (203)
T ss_dssp ---------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH------
T ss_pred --------CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH------
Confidence 1222233333333322110 001 24678888999876665 223344555554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003625 542 DALKEALAELYVIDGHYEKAFSLYA 566 (807)
Q Consensus 542 ~~~~~~l~~ly~~~~~~~~al~~~~ 566 (807)
...--..+.+|.+.|.|..|+..+-
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3344567889999999999998654
No 416
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.50 E-value=14 Score=40.61 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=22.3
Q ss_pred CceEEEEe-cCCEEEEEecCCeEEEEecCCCe
Q 003625 55 DAASCVAV-AERMIALGTHAGTVHILDFLGNQ 85 (807)
Q Consensus 55 ~~i~~~s~-~~~~la~gs~dg~I~i~d~~~~~ 85 (807)
+.+.++.+ +...|++-..||.++++|..|..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 45656555 34466677899999999997665
No 417
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.42 E-value=12 Score=37.82 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=85.1
Q ss_pred HHHHHHhcccHHHHHHHHHhcCC---CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhH--HHHHHHHhhcC-
Q 003625 399 HIAWLLEHGWHEKALAAVEAGQG---RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAW--ERWVFHFAHLR- 472 (807)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~---~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~w--e~~i~~F~~~~- 472 (807)
...-++++|+|++|+...+.... ............+.-++..++|+.|+..+.+++...+... +++...-.-+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34668889999999998865422 2222233344556677889999999988777765332211 22222211111
Q ss_pred C--CCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChH--HHHHHHHHhhhcCCChHHHHHHH
Q 003625 473 Q--LPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSAL--PVISAIEPQLNSSSMTDALKEAL 548 (807)
Q Consensus 473 ~--l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l 548 (807)
. ...+.+|.+......+....... .+.|.++|+..|..-|-.+ ..+..+.+++ ....-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A----------~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l------a~~e~~i 181 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAA----------FRDFSKLVRGYPNSQYTTDATKRLVFLKDRL------AKYELSV 181 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHH----------HHHHHHHHHHCcCChhHHHHHHHHHHHHHHH------HHHHHHH
Confidence 0 01123333333222222211111 1457778888887666533 3334555555 3344478
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 003625 549 AELYVIDGHYEKAFSLYA 566 (807)
Q Consensus 549 ~~ly~~~~~~~~al~~~~ 566 (807)
+.+|.+.|.|..|+.-+-
T Consensus 182 a~~Y~~~~~y~AA~~r~~ 199 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVE 199 (243)
T ss_pred HHHHHHcCchHHHHHHHH
Confidence 889999999998887543
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=91.12 E-value=9.5 Score=43.11 Aligned_cols=180 Identities=13% Similarity=0.077 Sum_probs=84.4
Q ss_pred ecCCEEEEEecCC-----eEEEEecCCCeeEEecC---CCcceeEEEEcCCCCEEEEEeCCC--cEEEEeccCCceeE--
Q 003625 62 VAERMIALGTHAG-----TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMK-- 129 (807)
Q Consensus 62 ~~~~~la~gs~dg-----~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~-- 129 (807)
.++..+++|+.++ .+..||...+.-..... .......+ .-+|...+.||.++ .+..||..++.-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 4566778887653 46677775433212111 11111112 23577777777543 47777765543322
Q ss_pred -EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe---EEEEEcccCCcc-ceEeecCCcCeEEEEEeCCEEEEEeCCcEE
Q 003625 130 -FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH---LYLNSKKWLGYR-DQVLHSGEGPVHVVKWRTSLIAWANDAGVK 203 (807)
Q Consensus 130 -~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~---v~l~~~~~~~~~-~~~~~~~~~~V~~l~~~~~~la~~~d~~v~ 203 (807)
+...+ ....++. + ++..++||.++. +..|+...+... ...+.........+.+.|.+.+.| |.+-
T Consensus 348 ~l~~~r~~~~~~~~--~-----g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e 418 (480)
T PHA02790 348 SLLKPRCNPAVASI--N-----NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAE 418 (480)
T ss_pred CCCCCCcccEEEEE--C-----CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceE
Confidence 22222 2222222 2 578888886643 556654311100 001111111223334456666655 3467
Q ss_pred EEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eC-----CcEEEEEEeeCC
Q 003625 204 VYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WG-----TYIKIASIKTNQ 257 (807)
Q Consensus 204 iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d-----~~i~vw~~~~~~ 257 (807)
+||..+++....-+.+ ......+++-.++.+.++| .+ +++.+||..++.
T Consensus 419 ~ydp~~~~W~~~~~m~-----~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSNTWTLIDDPI-----YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCCcEeEcCCCC-----CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8888876654321111 1112223344467777776 22 235556555443
No 419
>PHA03098 kelch-like protein; Provisional
Probab=90.97 E-value=13 Score=42.86 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=86.7
Q ss_pred EEEecCCEEEEEecCC------eEEEEecCCCeeEEecC---CCcceeEEEEcCCCCEEEEEeCCC-----cEEEEeccC
Q 003625 59 CVAVAERMIALGTHAG------TVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDDG-----SVVINSLFT 124 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg------~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~Dg-----~v~iwd~~~ 124 (807)
+...++..+++|+.++ .+..||.....-..... .......+ .-+|...+.||.++ .+..||..+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 3445677778887643 46677775443222221 11112222 23567777777653 466777766
Q ss_pred CceeE---EecCCceEEEEeCCCCCCcCCCEEEEecCC------CeEEEEEcc---cCCccceEeecCCcCeEEEEEeCC
Q 003625 125 DEKMK---FDYHRPMKAISLDPDYTRKMSRRFVAGGLA------GHLYLNSKK---WLGYRDQVLHSGEGPVHVVKWRTS 192 (807)
Q Consensus 125 ~~~~~---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~d------g~v~l~~~~---~~~~~~~~~~~~~~~V~~l~~~~~ 192 (807)
+.-.. +...+.-.+++.. + ++.++.||.+ ..+..|+.. |... ..+........++...+.
T Consensus 368 ~~W~~~~~lp~~r~~~~~~~~-~-----~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~ 439 (534)
T PHA03098 368 SKWREEPPLIFPRYNPCVVNV-N-----NLIYVIGGISKNDELLKTVECFSLNTNKWSKG--SPLPISHYGGCAIYHDGK 439 (534)
T ss_pred CceeeCCCcCcCCccceEEEE-C-----CEEEEECCcCCCCcccceEEEEeCCCCeeeec--CCCCccccCceEEEECCE
Confidence 44322 1222211122221 2 5777888742 246666643 2211 111111111223333455
Q ss_pred EEEEEe-C--------CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEe-C-----CcEEEEEEeeCC
Q 003625 193 LIAWAN-D--------AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGW-G-----TYIKIASIKTNQ 257 (807)
Q Consensus 193 ~la~~~-d--------~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~-d-----~~i~vw~~~~~~ 257 (807)
+.+.|+ + ..+.+||..+++....-..+ .+ ....+++..++.++++|. + +.+.+||..++.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FP---RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCC--cc---cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 555442 1 12788898877654321111 11 111222223667777762 2 357777776654
No 420
>PHA02713 hypothetical protein; Provisional
Probab=90.92 E-value=14 Score=42.56 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=82.8
Q ss_pred CCCEEEEEeCC------CcEEEEeccCCceeE---EecCC-ceEEEEeCCCCCCcCCCEEEEecCCCe-----EEEEEcc
Q 003625 104 DGEYVGSCSDD------GSVVINSLFTDEKMK---FDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGH-----LYLNSKK 168 (807)
Q Consensus 104 ~g~~l~s~~~D------g~v~iwd~~~~~~~~---~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~-----v~l~~~~ 168 (807)
++...+.||.+ ..+..||..++.-.. +...+ ....+++ + ++..+.||.+|. +..|+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~-----g~IYviGG~~~~~~~~sve~Ydp~ 375 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--D-----DTIYAIGGQNGTNVERTIECYTMG 375 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--C-----CEEEEECCcCCCCCCceEEEEECC
Confidence 56667777753 236677776654322 22222 2222222 2 578888887653 6667654
Q ss_pred cCC-ccceEeecCCcCeEEEEEeCCEEEEE-eC-----------------------CcEEEEEcCCCceEEeeeCCCCCC
Q 003625 169 WLG-YRDQVLHSGEGPVHVVKWRTSLIAWA-ND-----------------------AGVKVYDAANDQRITFIERPRGSP 223 (807)
Q Consensus 169 ~~~-~~~~~~~~~~~~V~~l~~~~~~la~~-~d-----------------------~~v~iwd~~~~~~~~~i~~~~~~~ 223 (807)
.+. .....+.........+...|.+.+.| .+ ..+..||..+++....-..+
T Consensus 376 ~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~---- 451 (557)
T PHA02713 376 DDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW---- 451 (557)
T ss_pred CCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC----
Confidence 211 11111111112222334456665554 22 24667887776554321111
Q ss_pred CCCCCCCeeeeeCCCEEEEE-eC------CcEEEEEEee-CCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCce
Q 003625 224 RPELLLPHLVWQDDTLLVIG-WG------TYIKIASIKT-NQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCL 295 (807)
Q Consensus 224 ~~~~~~~~l~~~~~~~l~~g-~d------~~i~vw~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l 295 (807)
......+++-.++.+.++| .+ ..+..||..+ +.... ...+.......|++.+++.+
T Consensus 452 -~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~---------------~~~m~~~r~~~~~~~~~~~i 515 (557)
T PHA02713 452 -TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL---------------ITTTESRLSALHTILHDNTI 515 (557)
T ss_pred -cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE---------------ccccCcccccceeEEECCEE
Confidence 1111223333467777776 33 2356676665 34221 11122233457788888888
Q ss_pred EEEEee
Q 003625 296 VVLAYI 301 (807)
Q Consensus 296 ~vl~~~ 301 (807)
.++|..
T Consensus 516 yv~Gg~ 521 (557)
T PHA02713 516 MMLHCY 521 (557)
T ss_pred EEEeee
Confidence 888753
No 421
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.54 E-value=0.34 Score=37.73 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChh
Q 003625 403 LLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (807)
Q Consensus 403 ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~ 459 (807)
|++.|+|++|+.+.+........-..+...++.-++..|++++|...+.++...++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 678999999999987543211112346678899999999999999998887765443
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.33 E-value=5.2 Score=43.40 Aligned_cols=145 Identities=11% Similarity=0.167 Sum_probs=78.1
Q ss_pred CCCCEEE-EEeCCCcEEEEeccCCcee-EEecCCceEEEEeCCCCCC--cCCCEEEEecCCCeEEEEEcccCCccceEee
Q 003625 103 VDGEYVG-SCSDDGSVVINSLFTDEKM-KFDYHRPMKAISLDPDYTR--KMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH 178 (807)
Q Consensus 103 ~~g~~l~-s~~~Dg~v~iwd~~~~~~~-~~~~~~~v~~v~~~p~~~~--~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~ 178 (807)
.+...|. .|+....++-.|+..|++. .+..+..| -|.|.|.+.. .....-++|-++..|.-.|.+-.|.+..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3444443 4555566777788778776 57777755 5788886421 1112334444444554445555555544433
Q ss_pred cCCcCeEEEEEe------CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEEEEeCCcEEE
Q 003625 179 SGEGPVHVVKWR------TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLVIGWGTYIKI 250 (807)
Q Consensus 179 ~~~~~V~~l~~~------~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~~g~d~~i~v 250 (807)
. ...++.=.|+ ..++|.+ ..|-|++||.-..+....++.- +..+-.+.- .+|.++++...+.+-+
T Consensus 556 s-KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l------G~aIk~idvta~Gk~ilaTCk~yllL 628 (776)
T COG5167 556 S-KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL------GDAIKHIDVTANGKHILATCKNYLLL 628 (776)
T ss_pred e-hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc------ccceeeeEeecCCcEEEEeecceEEE
Confidence 2 2223333333 2455554 6888999996433222222211 112223333 3777777778888888
Q ss_pred EEEee
Q 003625 251 ASIKT 255 (807)
Q Consensus 251 w~~~~ 255 (807)
.+++.
T Consensus 629 ~d~~i 633 (776)
T COG5167 629 TDVPI 633 (776)
T ss_pred Eeccc
Confidence 88764
No 423
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.21 E-value=13 Score=33.18 Aligned_cols=111 Identities=11% Similarity=0.134 Sum_probs=70.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeccC---------CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 99 LSFDVDGEYVGSCSDDGSVVINSLFT---------DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 99 l~~s~~g~~l~s~~~Dg~v~iwd~~~---------~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
-.|+....-|++++.-|+|.|.+... ..+..++..+.|++++-.|--.......++.|+.. ++..||..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~- 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE- 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc-
Confidence 35666666788888889999998653 23455677778888765442112234677777765 67778764
Q ss_pred CCccceEeecCCcCeEEEEEe------CCEEEEEeCCcEEEEEcCCCce
Q 003625 170 LGYRDQVLHSGEGPVHVVKWR------TSLIAWANDAGVKVYDAANDQR 212 (807)
Q Consensus 170 ~~~~~~~~~~~~~~V~~l~~~------~~~la~~~d~~v~iwd~~~~~~ 212 (807)
.......+.-...|.++.+- +.++..+.+..|.-||....+.
T Consensus 82 -~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 -NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred -cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 22222233344567777664 4666677777787777665443
No 424
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=90.21 E-value=0.93 Score=43.98 Aligned_cols=93 Identities=12% Similarity=0.235 Sum_probs=54.7
Q ss_pred cCCEEEEEecCCeEEEEecC--CCeeEEecCCCccee-EEEEcCCCCEEEEEeCCCcEEEEeccCCceeEEecCCceEEE
Q 003625 63 AERMIALGTHAGTVHILDFL--GNQVKEFPAHTAAVN-DLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKFDYHRPMKAI 139 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~--~~~~~~~~~h~~~V~-~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~~v~~v 139 (807)
-+..+++|+.+|.|.+|+.+ |.....+..-...|. .+.--.++.+..+++.||.|+.|+..-.+..-..++ .
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~-----h 143 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ-----H 143 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecc-----c
Confidence 45678899999999999986 222111111222232 222233556788999999999999876554432221 1
Q ss_pred EeCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 140 SLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 140 ~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
.+.| +..+++.+.++.+.+|+
T Consensus 144 ~~~~------~e~~ivv~sd~~i~~a~ 164 (238)
T KOG2444|consen 144 NFES------GEELIVVGSDEFLKIAD 164 (238)
T ss_pred cCCC------cceeEEecCCceEEeec
Confidence 2222 34555555666666664
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=22 Score=42.80 Aligned_cols=90 Identities=12% Similarity=0.032 Sum_probs=62.9
Q ss_pred ceeEEEEcCCCC-EEEEEeCCCcEEEEeccC--CceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC
Q 003625 95 AVNDLSFDVDGE-YVGSCSDDGSVVINSLFT--DEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG 171 (807)
Q Consensus 95 ~V~~l~~s~~g~-~l~s~~~Dg~v~iwd~~~--~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~ 171 (807)
-..++.|+|.=. ..+.+..|+.+++..+.- ..+..+.....++||+|+|. |+.+++|...|++.-|... .
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSpr-----GKQl~iG~nnGt~vQy~P~--l 229 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPR-----GKQLFIGRNNGTEVQYEPS--L 229 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccc-----cceeeEecCCCeEEEeecc--c
Confidence 345677887533 356677888888877654 33344455558999999999 9999999999999887543 2
Q ss_pred ccceEeec----CCcCeEEEEEeC
Q 003625 172 YRDQVLHS----GEGPVHVVKWRT 191 (807)
Q Consensus 172 ~~~~~~~~----~~~~V~~l~~~~ 191 (807)
.....+++ ....|.+|+|-+
T Consensus 230 eik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 230 EIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred ceeecccCCCcCCCcceeEEEEec
Confidence 22233332 247899999994
No 426
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.10 E-value=2.6 Score=41.79 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=45.7
Q ss_pred cccCCCceEEEEecCCEEEEEecCCeEEEEecCCCee-E-E------ec-------CCCcceeEEEEcCCCCEEEEEeCC
Q 003625 50 SLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQV-K-E------FP-------AHTAAVNDLSFDVDGEYVGSCSDD 114 (807)
Q Consensus 50 ~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~-~-~------~~-------~h~~~V~~l~~s~~g~~l~s~~~D 114 (807)
.+.-++.++.+..+++++++-+.+|.+++||+..... . . +. .....|..+.++.+|.-+++-+ +
T Consensus 8 ~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 8 PIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred cEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C
Confidence 3334455677888999999999999999999954431 1 0 11 2334566666666666555443 3
Q ss_pred CcEEEEecc
Q 003625 115 GSVVINSLF 123 (807)
Q Consensus 115 g~v~iwd~~ 123 (807)
|..+.|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 555555543
No 427
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.01 E-value=12 Score=41.35 Aligned_cols=73 Identities=8% Similarity=-0.025 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCCCCh--hHHHHHHHHHHH-hchHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHH
Q 003625 636 LYLHALFEVNPHAGK--DFHDMQVELYAD-YDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAV 712 (807)
Q Consensus 636 ~yLe~l~~~~~~~~~--~~~~~l~~ly~~-~~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~ 712 (807)
..++......| .+. .++..|..+|.. .+.++-.++++.-. +++.-+...-....+-++.++|++++|.++
T Consensus 320 ~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~------a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 320 KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVA------ACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhH------HhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55666566665 444 678888888764 35667777777310 111111111223557888899999998777
Q ss_pred HHH
Q 003625 713 IIN 715 (807)
Q Consensus 713 ~i~ 715 (807)
+=.
T Consensus 393 ~~~ 395 (409)
T TIGR00540 393 RQD 395 (409)
T ss_pred HHH
Confidence 654
No 428
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=89.70 E-value=55 Score=39.56 Aligned_cols=74 Identities=11% Similarity=-0.071 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhhCCCCChhHHHHHHHHHHH-hchHHHHHHhhcCCCCCHHHHHHHHhc-CCchhHHHHHHhhcCChHH
Q 003625 631 RYFLHLYLHALFEVNPHAGKDFHDMQVELYAD-YDLKMLLPFLRSSQHYTLEKAYEICVK-RDLLREQVFILGRMGNTKH 708 (807)
Q Consensus 631 ~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~-~~~~kl~~fL~~~~~y~~~~al~~~~~-~~~~~e~~~L~~r~g~~~~ 708 (807)
.......|+.+....|.. ...+..+..+|.. .++.+.+..|+ +|+.+-+. ..+.-..++++.+.|++++
T Consensus 375 ~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~--------~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 375 LPQAEMRARELAYNAPGN-QGLRIDYASVLQARGWPRAAENELK--------KAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 344456778877777754 5677777777754 34455444433 34443333 2455577888888888888
Q ss_pred HHHHH
Q 003625 709 ALAVI 713 (807)
Q Consensus 709 Al~~~ 713 (807)
|..++
T Consensus 446 A~~~~ 450 (765)
T PRK10049 446 MDVLT 450 (765)
T ss_pred HHHHH
Confidence 77665
No 429
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.49 E-value=13 Score=43.29 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHh
Q 003625 680 LEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKL 717 (807)
Q Consensus 680 ~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l 717 (807)
+..|-+.|+..+.++..+.||.-.|+|+.|+.++-..|
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L 454 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555668889999999999999999999999998875
No 430
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.29 E-value=38 Score=37.19 Aligned_cols=170 Identities=9% Similarity=0.056 Sum_probs=92.3
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcch-----hh---------Hhh---hcc----------------
Q 003625 535 LNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYI-----FD---------FIE---NHN---------------- 581 (807)
Q Consensus 535 ~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~-----~~---------~i~---~~~---------------- 581 (807)
....+++......+..+|...|+|++|+.++-++..... .. .+. +..
T Consensus 180 ~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~ 259 (398)
T PRK10747 180 LEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT 259 (398)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 334455666788888999999999999977777653211 11 010 000
Q ss_pred --chHHHHHHHHHHHhc-ChhHHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHH
Q 003625 582 --LHDAIREKVVQLMLL-DCKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVE 658 (807)
Q Consensus 582 --~~~~~~~~~~~l~~~-~~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ 658 (807)
..+....++..++.. +++++..++.+.-..-+-..++..+..... +.+.-....++.+....| .+...+-.+..
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~--~~~~~al~~~e~~lk~~P-~~~~l~l~lgr 336 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKT--NNPEQLEKVLRQQIKQHG-DTPLLWSTLGQ 336 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccC--CChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 111122223333333 345566665542221111222222222111 234445577888887777 56678888888
Q ss_pred HHHHh-chHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHH
Q 003625 659 LYADY-DLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIIN 715 (807)
Q Consensus 659 ly~~~-~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~ 715 (807)
+++.. +.++-.++++.+ +.+-+...-+-..+-++.++|++++|.+++-.
T Consensus 337 l~~~~~~~~~A~~~le~a--------l~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAA--------LKQRPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHCCCHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88754 345555555443 22223322334678889999999999777654
No 431
>PRK02888 nitrous-oxide reductase; Validated
Probab=89.17 E-value=4.1 Score=46.26 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=68.8
Q ss_pred cCCEEEEEecCCeEEEEecCC-----CeeEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEEeccCCc----------
Q 003625 63 AERMIALGTHAGTVHILDFLG-----NQVKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDE---------- 126 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~-----~~~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~---------- 126 (807)
+|++..+ .++.|.++|... ..+..+-.-....+.+.++|||+++++++ .+++|.|.|+.+.+
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 4555544 256788999854 33333333444667899999999877665 58999999998733
Q ss_pred ---eeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 127 ---KMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 127 ---~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.............+|+++ |+.+.+-..|..|..|+..
T Consensus 365 ~~vvaevevGlGPLHTaFDg~-----G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 365 DAVVAEPELGLGPLHTAFDGR-----GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred ceEEEeeccCCCcceEEECCC-----CCEEEeEeecceeEEEehH
Confidence 112233334456789888 7888888999999999854
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.12 E-value=0.48 Score=54.35 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=81.4
Q ss_pred CeEEEEec---CCCe-----eEEecCCCcceeEEEEcC---CCCEEEEEeCCCcEEEEeccCCceeEEecCC-ceEEE--
Q 003625 74 GTVHILDF---LGNQ-----VKEFPAHTAAVNDLSFDV---DGEYVGSCSDDGSVVINSLFTDEKMKFDYHR-PMKAI-- 139 (807)
Q Consensus 74 g~I~i~d~---~~~~-----~~~~~~h~~~V~~l~~s~---~g~~l~s~~~Dg~v~iwd~~~~~~~~~~~~~-~v~~v-- 139 (807)
|...+|++ +|+. ++........+.-+.|.| +.-++..+-.+|.+++.+.++.....+..|. .+..+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 66788987 3544 223333444555566664 6677888888999998776653322222233 33322
Q ss_pred ---------EeCCCCCCcCCCEEEEecCCCeEEEEEcccCCc----cceEeecCC-cCeEEEEEe---------C--CEE
Q 003625 140 ---------SLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGY----RDQVLHSGE-GPVHVVKWR---------T--SLI 194 (807)
Q Consensus 140 ---------~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~----~~~~~~~~~-~~V~~l~~~---------~--~~l 194 (807)
.++|| |..|+..+.||.+..|..-..+. +....+.|+ ++-.|..++ | .++
T Consensus 233 ~~~g~~~l~~lSpD-----Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~ 307 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPD-----GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLR 307 (1283)
T ss_pred HhhchhhheeeCCC-----CcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEE
Confidence 26888 99999999999999997654442 222233444 333232233 1 344
Q ss_pred EEE--eCCcEEEEEcCCCceE
Q 003625 195 AWA--NDAGVKVYDAANDQRI 213 (807)
Q Consensus 195 a~~--~d~~v~iwd~~~~~~~ 213 (807)
+++ .++.+++|.....+|+
T Consensus 308 Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 308 ITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EecccCCcceeEeeccchhhh
Confidence 444 3677999998877766
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.01 E-value=14 Score=38.49 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred EecCCEEEEEecCCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEecc-CCcee-E--Ee--cC
Q 003625 61 AVAERMIALGTHAGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLF-TDEKM-K--FD--YH 133 (807)
Q Consensus 61 s~~~~~la~gs~dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~-~~~~~-~--~~--~~ 133 (807)
+++|+++++++......-|+.-... ...-+.-...|.++.|+|++...+.+ ..|.++.=+.. ..... . .. ..
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence 3577777777655555566653222 22223355789999999998876654 88888887722 11111 1 11 22
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee---cCCcCeEEEEEe--CCEEEEEeCCcEEEE
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH---SGEGPVHVVKWR--TSLIAWANDAGVKVY 205 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~---~~~~~V~~l~~~--~~~la~~~d~~v~iw 205 (807)
. .+..++|.++ +...++|+. |.+.+- .-.|+.-+... .-.+....+.|. .+-++.+.+|.+--|
T Consensus 232 ~~~~ld~a~~~~-----~~~wa~gg~-G~l~~S--~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 232 GYGILDLAYRPP-----NEIWAVGGS-GTLLVS--TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -S-EEEEEESSS-----S-EEEEEST-T-EEEE--SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ceeeEEEEecCC-----CCEEEEeCC-ccEEEe--CCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 2 6889999988 566666554 555432 11233322222 223457788887 356677777766444
No 434
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.56 E-value=59 Score=38.44 Aligned_cols=63 Identities=11% Similarity=0.033 Sum_probs=44.1
Q ss_pred eCChhhHHHHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChh
Q 003625 393 PRDAEDHIAWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSAS 459 (807)
Q Consensus 393 ~~~~~d~i~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~ 459 (807)
.-.+.+.+.-++.+|++..|+.+++.. +.+.+.+..++.. ++..|++++|...+.+.+..++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~----~l~~g~~~~A~~~l~~~l~~~P~ 108 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVIS----PLASSQPDAVLQVVNKLLAVNVC 108 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhh----HhhcCCHHHHHHHHHHHHHhCCC
Confidence 345567788899999999999998643 2344444444433 34589999999998888765443
No 435
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.34 E-value=8.5 Score=42.01 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=29.4
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEeccC-CceeEEecCC-ceEEEEe
Q 003625 95 AVNDLSFDVDGEYVGSCSDDGSVVINSLFT-DEKMKFDYHR-PMKAISL 141 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~-~~~~~~~~~~-~v~~v~~ 141 (807)
.|..+..++.|..++-+|.+|.+.++=.+. |+-..+...+ .|+|=.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~ 153 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTT 153 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEee
Confidence 466778899999999999999877654222 3333343333 3444333
No 436
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.33 E-value=10 Score=39.72 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=68.8
Q ss_pred CeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeC-CCcEEEEeccC--Cce------eEEecCC-ceEEEEeCC
Q 003625 74 GTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSD-DGSVVINSLFT--DEK------MKFDYHR-PMKAISLDP 143 (807)
Q Consensus 74 g~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~-Dg~v~iwd~~~--~~~------~~~~~~~-~v~~v~~~p 143 (807)
|.++.++..+..++.+..+-..-+.|+|||||+.+..+.. .+.+..|++.. +.+ ....... ..=.++.+.
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 4455555555656666666666688999999987766654 46777777652 111 1111212 344455666
Q ss_pred CCCCcCCCEEEEecCCC-eEEEEEcccCCccceEeecCCcCeEEEEEeC
Q 003625 144 DYTRKMSRRFVAGGLAG-HLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT 191 (807)
Q Consensus 144 ~~~~~~~~~l~~g~~dg-~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~ 191 (807)
+ |.+.+++..+| .|..|+.. +.....+.-....+++++|-|
T Consensus 223 d-----G~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 223 D-----GNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred C-----CCEEEecccCCceEEEECCC--CcEEEEEECCCCCCccceEeC
Confidence 6 66665555444 77777664 666666666657788888884
No 437
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.96 E-value=1.4 Score=33.85 Aligned_cols=58 Identities=21% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccC
Q 003625 400 IAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS 457 (807)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~ 457 (807)
-..+++.|+|++|+...+........-.......+.-++..|++++|...+.+.+..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4568999999999999986544222234577777888889999999999987776543
No 438
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=87.94 E-value=5.3 Score=44.10 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=94.0
Q ss_pred HHHHHhcccHHHHHHHHHhcCC--CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhcc---ChhhHH-----HH---HH
Q 003625 400 IAWLLEHGWHEKALAAVEAGQG--RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG---SASAWE-----RW---VF 466 (807)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~--~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~---~~~~we-----~~---i~ 466 (807)
.+.+++.|+|+.|+..++.... +.+ ..+....+.-+...|+|++|..+++.+... +...+. -+ +.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~--~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRH--KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5778889999999988875433 222 246777888889999999999988887743 222231 11 21
Q ss_pred HHhhcCCCCccccc---CcCCCCCCCHHHHHHHHHHHhcCCCChHH----HHHHhhc-CCcC--------------CCCh
Q 003625 467 HFAHLRQLPVLVPY---MPTENPRLRDTAYEVALVALATNPSFHKY----LLSTVKS-WPPV--------------IYSA 524 (807)
Q Consensus 467 ~F~~~~~l~~L~~y---l~~~~~~l~~~~~~~~L~~~~~~~~~~~~----~~~~i~~-~~~~--------------l~~~ 524 (807)
.-......+.|..+ +|... +-++..+..+-..+.... +.+. +.+.+++ |++. .-+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~-~~~~~l~~~~a~~l~~~g-~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHR-RHNIALKIALAEHLIDCD-DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHH-hCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 11222222233322 23211 123333333333333221 2222 2222232 2211 0123
Q ss_pred HHHHHHHHHhhhcCCChH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 003625 525 LPVISAIEPQLNSSSMTD--ALKEALAELYVIDGHYEKAFSLYA 566 (807)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~--~~~~~l~~ly~~~~~~~~al~~~~ 566 (807)
......++..+...+.++ .+...++.++...|+|++|.+++-
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 455666667777777777 889999999999999999999776
No 439
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.89 E-value=67 Score=38.31 Aligned_cols=152 Identities=21% Similarity=0.201 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHccCc--c--hh-------hHhhhccchHHHHHHHHHHHhc-ChhHHHHHhhhcCCCC
Q 003625 545 KEALAELYVIDGHYEKAFSLYADLMKP--Y--IF-------DFIENHNLHDAIREKVVQLMLL-DCKRAVSLLIQNKDLI 612 (807)
Q Consensus 545 ~~~l~~ly~~~~~~~~al~~~~~~~~~--~--~~-------~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~ll~~~~~~~ 612 (807)
+-.++.=|...|+|++|..+|++-... + ++ -+|.+..+-..+.-+-..+... +.-+++.||=
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG------ 383 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG------ 383 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH------
Confidence 345677788999999999999985331 1 22 2233333332222222211111 1122333332
Q ss_pred ChHHHHHHHhccc-ccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHhchHHHHHHhh-------cCCCCCHHHHH
Q 003625 613 TPSEVVTQLLNAR-DKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADYDLKMLLPFLR-------SSQHYTLEKAY 684 (807)
Q Consensus 613 ~~~~vi~~l~~~~-~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~~~~kl~~fL~-------~~~~y~~~~al 684 (807)
.|-... ...........+|.......+... +-.-.+..||...++.+-+.++. +....-+..
T Consensus 384 -------~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~-~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E-- 453 (1018)
T KOG2002|consen 384 -------CLYAHSAKKQEKRDKASNVLGKVLEQTPVDS-EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPE-- 453 (1018)
T ss_pred -------hHHHhhhhhhHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHH--
Confidence 111100 000122333455666555554333 34445666676666554444443 322222222
Q ss_pred HHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCC
Q 003625 685 EICVKRDLLREQVFILGRMGNTKHALAVIINKLGD 719 (807)
Q Consensus 685 ~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d 719 (807)
+..-.+-++-++|+.++|...+..-++.
T Consensus 454 -------~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 454 -------VLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred -------HHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 2235677888999999988877665443
No 440
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=87.74 E-value=73 Score=38.55 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCCChhHHHHHHHHHHH-h-chHHHHHHhhcCC---C-CCHHHHHHHHhcCC
Q 003625 633 FLHLYLHALFEVNPHAGKDFHDMQVELYAD-Y-DLKMLLPFLRSSQ---H-YTLEKAYEICVKRD 691 (807)
Q Consensus 633 ~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~-~-~~~kl~~fL~~~~---~-y~~~~al~~~~~~~ 691 (807)
-.+.+|..+++.++......++ +++-|.+ | ++..+-.||+-|. + =++..++...+.+=
T Consensus 241 ~~i~iLK~iL~~~~~n~~a~~~-l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 241 EVIYILKKILEHDNKNNKAREE-LIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred HHHHHHHHHHhcCCcchhhHHH-HHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHe
Confidence 4457888888888866655444 4555543 3 4667888888863 3 45677888777543
No 441
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.73 E-value=27 Score=36.12 Aligned_cols=219 Identities=15% Similarity=0.214 Sum_probs=101.3
Q ss_pred EEeCChhhHH---HHHHhcccHHHHHHHHHh----cCCCchh----HhHHHHHHHHH------------HhCcccH-HHH
Q 003625 391 AKPRDAEDHI---AWLLEHGWHEKALAAVEA----GQGRSEL----LDEVGSRYLDH------------LIVERKY-AEA 446 (807)
Q Consensus 391 ~~~~~~~d~i---~~ll~~~~~~~Al~~~~~----~~~~~~~----~~~i~~~~~~~------------l~~~~~~-~~A 446 (807)
..+.+.+-++ ..+-.+|..+.|+.+=+. ...+.++ +.++++-|+-. |...++| +.|
T Consensus 64 ~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 64 EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 4555666666 345679999999987543 2223332 34555555432 2232222 234
Q ss_pred HhHhhHhhccChhhHHHHHHHHhhcCCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHH
Q 003625 447 ASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALP 526 (807)
Q Consensus 447 ~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 526 (807)
.+....++.. ..+|++.|..-..- ..+.+.-|...+.+|.-..... ...+ -+.+.
T Consensus 144 lqqLl~IYQ~-treW~KAId~A~~L--------------~k~~~q~~~~eIAqfyCELAq~-----~~~~-----~~~d~ 198 (389)
T COG2956 144 LQQLLNIYQA-TREWEKAIDVAERL--------------VKLGGQTYRVEIAQFYCELAQQ-----ALAS-----SDVDR 198 (389)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHH--------------HHcCCccchhHHHHHHHHHHHH-----Hhhh-----hhHHH
Confidence 4444445543 57899888765321 0122223333333332210000 0000 01122
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHccCcchhhHhhhcc--chHHHHHHHHHHHh--cChhHHH
Q 003625 527 VISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADLMKPYIFDFIENHN--LHDAIREKVVQLML--LDCKRAV 602 (807)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~--~~~~~~~ 602 (807)
....+...+..+.+..----.+..++..+|+|.+|++.|-.. .+++ ....|.+.+..-.. -.++.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v---------~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV---------LEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH---------HHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 233333333322221112235778899999999999976543 2222 22222222221111 1344555
Q ss_pred HHhhh---cCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCC
Q 003625 603 SLLIQ---NKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNP 646 (807)
Q Consensus 603 ~ll~~---~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~ 646 (807)
..|.. ......+..++..+.... +-+.....||-..+...|
T Consensus 270 ~fL~~~~~~~~g~~~~l~l~~lie~~---~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 270 NFLRRAMETNTGADAELMLADLIELQ---EGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHHh---hChHHHHHHHHHHHhhCC
Confidence 55554 222344555555543211 123444567777777776
No 442
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=87.41 E-value=0.27 Score=47.69 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=68.0
Q ss_pred CCcccccCcCC-CCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 003625 474 LPVLVPYMPTE-NPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELY 552 (807)
Q Consensus 474 l~~L~~yl~~~-~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly 552 (807)
++.|.|||..+ ...++|.+...++.+|.+.. ..+.+.++|-..+....|++.++..|.++. +++++.++|
T Consensus 5 le~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~-~~~~lE~lI~~LD~~~LDidq~i~lC~~~~--------LydalIYv~ 75 (196)
T PF12816_consen 5 LECLEPFILSGKIKSLPPEVFKALVEHYASKG-RLERLEQLILHLDPSSLDIDQVIKLCKKHG--------LYDALIYVW 75 (196)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHhCCHHhcCHHHHHHHHHHCC--------CCCeeeeee
Confidence 45678888776 34689999999999998764 778999999999999999999999999988 888888888
Q ss_pred Hh-cCCHHHHHHHHH
Q 003625 553 VI-DGHYEKAFSLYA 566 (807)
Q Consensus 553 ~~-~~~~~~al~~~~ 566 (807)
.+ .++|-.=|.-++
T Consensus 76 n~~l~DYvTPL~~ll 90 (196)
T PF12816_consen 76 NRALNDYVTPLEELL 90 (196)
T ss_pred eccccCCcHHHHHHH
Confidence 44 377655554433
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.19 E-value=31 Score=40.15 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=85.3
Q ss_pred eEEEEecCCEEEEEecCCeEEEEecCCCee-------EEec----------------CCCcceeEEEEcC--CCCEEEEE
Q 003625 57 ASCVAVAERMIALGTHAGTVHILDFLGNQV-------KEFP----------------AHTAAVNDLSFDV--DGEYVGSC 111 (807)
Q Consensus 57 i~~~s~~~~~la~gs~dg~I~i~d~~~~~~-------~~~~----------------~h~~~V~~l~~s~--~g~~l~s~ 111 (807)
.+|++. +++++++. .+.|.||+.++-.. ..+. .....|+.|.... +.+.|+.|
T Consensus 43 Ltalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c 120 (717)
T PF08728_consen 43 LTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLC 120 (717)
T ss_pred eeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEE
Confidence 445544 77777755 68999999843211 0000 0111344444332 44578999
Q ss_pred eCCCcEEEEeccC-------C----c----------eeEEecCCceEEEEeC--CCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 112 SDDGSVVINSLFT-------D----E----------KMKFDYHRPMKAISLD--PDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 112 ~~Dg~v~iwd~~~-------~----~----------~~~~~~~~~v~~v~~~--p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
.+||.|.+|.+.+ . + -..+.....+++++++ .. .+++|+++....|.+|--.
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~-----~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK-----SRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc-----ceEEEEecCCceEEEEEEe
Confidence 9999999997532 0 0 0122333378899998 55 6899999999999988543
Q ss_pred cCCccceE--eecCCcCeEEEEEe-------CC-EEEEE-eCCcEEEEEcC
Q 003625 169 WLGYRDQV--LHSGEGPVHVVKWR-------TS-LIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 169 ~~~~~~~~--~~~~~~~V~~l~~~-------~~-~la~~-~d~~v~iwd~~ 208 (807)
....+... -..+..-|-+|+|- |. .++++ -.|.+-+|++.
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 22111111 11244557888887 22 44444 48888887773
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.78 E-value=0.19 Score=57.42 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred EEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEE-----------EcCCCCEEEEEeCCCcEEEEeccC-Cce
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLS-----------FDVDGEYVGSCSDDGSVVINSLFT-DEK 127 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~-----------~s~~g~~l~s~~~Dg~v~iwd~~~-~~~ 127 (807)
+.++..+++.|-.+|+|++.+.+.....-+.+|...++.++ .||||+.+++++.||.++.|.+.- ++.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 44467788899999999998876544444555765555443 689999999999999999987653 322
Q ss_pred ----e-EEecCC--ceEEEEeCCCCCC----cCCCEEEEecCCC-eEEEEEcc-cCC------ccceEeecCCcCeEEEE
Q 003625 128 ----M-KFDYHR--PMKAISLDPDYTR----KMSRRFVAGGLAG-HLYLNSKK-WLG------YRDQVLHSGEGPVHVVK 188 (807)
Q Consensus 128 ----~-~~~~~~--~v~~v~~~p~~~~----~~~~~l~~g~~dg-~v~l~~~~-~~~------~~~~~~~~~~~~V~~l~ 188 (807)
. .++.|. +-.|.-++.+-.. ..-.+.++++.-| .+++|... |.. ....++..|.+.|+...
T Consensus 271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~ 350 (1283)
T KOG1916|consen 271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLS 350 (1283)
T ss_pred cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeecCCCccccchh
Confidence 1 233333 2222223322000 0013455555444 48888532 221 22334445666666644
Q ss_pred Ee----CCEEEEEeCCcEEEEEcC
Q 003625 189 WR----TSLIAWANDAGVKVYDAA 208 (807)
Q Consensus 189 ~~----~~~la~~~d~~v~iwd~~ 208 (807)
.+ -+.+...-+++|.+|.-+
T Consensus 351 ~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 351 MCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred hhHHHHHHHHHhhhHHHHHHhhcc
Confidence 33 122222347888888644
No 445
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.60 E-value=93 Score=38.57 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=75.0
Q ss_pred HHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhcc---ChhhHHHHHHHHhhcCC--
Q 003625 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG---SASAWERWVFHFAHLRQ-- 473 (807)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~---~~~~we~~i~~F~~~~~-- 473 (807)
-++|+++++.|..|.++-. .. +.+.. ...++ ..+...+.+.+|++..-..+.. +...-++..+.-++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~--~~~r~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLA-TL-PANEM--LEERY-AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHHhccHHHHHHHHhc-CC-CcchH--HHHHH-hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHH
Confidence 3689999999998887733 22 22221 11121 1233444555555444444443 22222333333333332
Q ss_pred -----CCcccccCcCCCCCCCHHHHHHHHHHHhcCCC--ChHHHHHHhh--------cCCcCCCChHHHHHHHHHhhhcC
Q 003625 474 -----LPVLVPYMPTENPRLRDTAYEVALVALATNPS--FHKYLLSTVK--------SWPPVIYSALPVISAIEPQLNSS 538 (807)
Q Consensus 474 -----l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~--~~~~~~~~i~--------~~~~~l~~~~~~~~~~~~~~~~~ 538 (807)
++...+. ....+++..+.+-+...|..++. ...+.+.+.. .|...+-+.......+...+...
T Consensus 394 ~a~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 471 (987)
T PRK09782 394 EAADLLLQRYPF--QGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM 471 (987)
T ss_pred HHHHHHHHhcCC--CcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence 2222222 22345556666566666654421 1233333322 12222222222333333333322
Q ss_pred CC--hHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 539 SM--TDALKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 539 ~~--~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
+. ....+..++.++.. +++.+|+.++.+.
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 33 45566667777766 7888899877653
No 446
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=86.60 E-value=7.9 Score=40.91 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=102.5
Q ss_pred HHHHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhcc----C-------hhhHHHHHHH
Q 003625 399 HIAWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG----S-------ASAWERWVFH 467 (807)
Q Consensus 399 ~i~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~----~-------~~~we~~i~~ 467 (807)
+.+.++.+++|+.|.+-...-......-.++.+...+.++..|+|...-.+.+++-.. + ...|+-+...
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 5578899999999997665432211112346667777888889999888877665321 1 2345555566
Q ss_pred HhhcCCCCcccccC---cCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHh-----hcCCcCC---------CChHHHHHH
Q 003625 468 FAHLRQLPVLVPYM---PTENPRLRDTAYEVALVALATNPSFHKYLLSTV-----KSWPPVI---------YSALPVISA 530 (807)
Q Consensus 468 F~~~~~l~~L~~yl---~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i-----~~~~~~l---------~~~~~~~~~ 530 (807)
-.+.+..+.|..+. |+.. +-.+++--.+-.+++.-. +++.-.+.+ +.|++.| -+....+..
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~-~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~ 316 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLG-DHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKA 316 (400)
T ss_pred HhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHH
Confidence 66666666666654 3321 122333333333333221 222222222 1243322 234577778
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003625 531 IEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (807)
Q Consensus 531 ~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (807)
++.++....+++.++..|..||.+++.|.+|-..+-.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888889999999999999999999887653
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.57 E-value=50 Score=39.13 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=45.9
Q ss_pred EEEecCCEEEEEecCCeEEE-----EecCC-----Ce---eEEe--------cCCCcceeEEEEcCC---CCEEEEEeCC
Q 003625 59 CVAVAERMIALGTHAGTVHI-----LDFLG-----NQ---VKEF--------PAHTAAVNDLSFDVD---GEYVGSCSDD 114 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i-----~d~~~-----~~---~~~~--------~~h~~~V~~l~~s~~---g~~l~s~~~D 114 (807)
.++++|.++|..|..|...+ |-.+| .. .+++ ..+...|..+.|+|. +.+|+.-..|
T Consensus 91 ~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsd 170 (717)
T PF10168_consen 91 SLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSD 170 (717)
T ss_pred EECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecC
Confidence 36678999998888775544 21111 11 1221 124457889999996 5789999999
Q ss_pred CcEEEEeccC
Q 003625 115 GSVVINSLFT 124 (807)
Q Consensus 115 g~v~iwd~~~ 124 (807)
+++|+||+..
T Consensus 171 n~lR~y~~~~ 180 (717)
T PF10168_consen 171 NTLRLYDISD 180 (717)
T ss_pred CEEEEEecCC
Confidence 9999999975
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.56 E-value=35 Score=33.60 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=71.6
Q ss_pred cceeEEEEcCCCCEEEEEeCC---------CcEEEEeccCCceeEEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEE
Q 003625 94 AAVNDLSFDVDGEYVGSCSDD---------GSVVINSLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYL 164 (807)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~D---------g~v~iwd~~~~~~~~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l 164 (807)
.+.+.-..+|+|++.+-.-.| |.++.|-.....-..+..-.--+.++|+.+ ...+..+-+.+-.|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d----~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD----AKKFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccccc----CcEEEEEccCceEEee
Confidence 355666779999995543333 334444332211111111113467888876 2345556666667777
Q ss_pred EEcccCC---ccceE-e--e-----cCCcC-eEEEEEeCCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCe
Q 003625 165 NSKKWLG---YRDQV-L--H-----SGEGP-VHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPH 231 (807)
Q Consensus 165 ~~~~~~~---~~~~~-~--~-----~~~~~-V~~l~~~~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~ 231 (807)
|+-...+ ....+ + . ++..| =.+|.-.|.+.+++ +.++|.-.|..+|+.+..+..|.. .+++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~------qits 258 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP------QITS 258 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC------ceEE
Confidence 7633222 11111 1 1 11111 12233336666555 888999999999999998887742 2556
Q ss_pred eeee
Q 003625 232 LVWQ 235 (807)
Q Consensus 232 l~~~ 235 (807)
++|-
T Consensus 259 ccFg 262 (310)
T KOG4499|consen 259 CCFG 262 (310)
T ss_pred EEec
Confidence 6664
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=86.51 E-value=49 Score=35.30 Aligned_cols=147 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEE-EeccCCc-eeEEecC-C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcc
Q 003625 93 TAAVNDLSFDVDGEYVGSCSDDGSVVI-NSLFTDE-KMKFDYH-R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~i-wd~~~~~-~~~~~~~-~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~ 168 (807)
...+.++.+.|++.+++++ ..|.+.. ++ ..+. -...... . .++++++.|+ ++.+++| ..|.+.+-...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~-----g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPD-----GNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCC-----CCEEEEe-cCCEEEEccCC
Confidence 4578899999988766554 4555443 22 2222 2223222 2 8999999998 6666665 45776542111
Q ss_pred cCCccceEeec----CCcCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeee-eCCCEEE
Q 003625 169 WLGYRDQVLHS----GEGPVHVVKWR--TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVW-QDDTLLV 241 (807)
Q Consensus 169 ~~~~~~~~~~~----~~~~V~~l~~~--~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~-~~~~~l~ 241 (807)
.+..-..... ....+.++.+. +.+++++.+|.+. .....++.-..+..+...+ .....+.+ +++..++
T Consensus 244 -~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~---~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 244 -DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVP---SNFYKIVFLDPEKGFV 318 (334)
T ss_pred -CCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCC---cceEEEEEeCCCceEE
Confidence 2222121111 12346777777 5677777766553 4444444333322111110 11233444 4677788
Q ss_pred EEeCCcEEEEE
Q 003625 242 IGWGTYIKIAS 252 (807)
Q Consensus 242 ~g~d~~i~vw~ 252 (807)
+|..|.|--++
T Consensus 319 ~G~~G~il~~~ 329 (334)
T PRK13684 319 LGQRGVLLRYV 329 (334)
T ss_pred ECCCceEEEec
Confidence 88888875553
No 450
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.22 E-value=33 Score=34.39 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=82.2
Q ss_pred hHHHHHHhcccHHHHHHHHHhc----CCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccC--hhhHHHHHHHHhhc
Q 003625 398 DHIAWLLEHGWHEKALAAVEAG----QGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGS--ASAWERWVFHFAHL 471 (807)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~----~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~--~~~we~~i~~F~~~ 471 (807)
....-.+++|+|++|....+.- +..+-. +.....-+...+.+++|+.|....-+++..- +..=+++..
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y----- 112 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY----- 112 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH-----
Confidence 4557789999999999887542 222221 2333334444577889999977644444311 111111111
Q ss_pred CCCCcccccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChH--HHHHHHHHhhhcCCChHHHHHHHH
Q 003625 472 RQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSAL--PVISAIEPQLNSSSMTDALKEALA 549 (807)
Q Consensus 472 ~~l~~L~~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 549 (807)
|..|+.|.+-..+.-++..... -...|.++|+++|..-|-.+ ..+..+.+++ ..+--..+
T Consensus 113 --lkgLs~~~~i~~~~rDq~~~~~----------A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L------A~~Em~Ia 174 (254)
T COG4105 113 --LKGLSYFFQIDDVTRDQSAARA----------AFAAFKELVQRYPNSRYAPDAKARIVKLNDAL------AGHEMAIA 174 (254)
T ss_pred --HHHHHHhccCCccccCHHHHHH----------HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH------HHHHHHHH
Confidence 1111222222211111111111 12568889999998777643 4445555665 44666788
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003625 550 ELYVIDGHYEKAFSLYAD 567 (807)
Q Consensus 550 ~ly~~~~~~~~al~~~~~ 567 (807)
.+|.++|.|..|..-...
T Consensus 175 ryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 175 RYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHhcChHHHHHHHHH
Confidence 899999999999986553
No 451
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.94 E-value=42 Score=34.18 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=77.3
Q ss_pred EEEEecCCEEEEEe---cCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEe-ccCCc--eeEEe
Q 003625 58 SCVAVAERMIALGT---HAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINS-LFTDE--KMKFD 131 (807)
Q Consensus 58 ~~~s~~~~~la~gs---~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd-~~~~~--~~~~~ 131 (807)
.+++++++.+|.-+ ....++++...+.......+. .++.-+|+++|...+....++..+++. ..++. .....
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~ 106 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVD 106 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEec
Confidence 36888998776655 445666666554443333333 678889999987776666666777764 22332 22232
Q ss_pred c--CC-ceEEEEeCCCCCCcCCCEEEEec---CCCeEEEEEcccC--C------ccceEeecCCcCeEEEEEe--CCEEE
Q 003625 132 Y--HR-PMKAISLDPDYTRKMSRRFVAGG---LAGHLYLNSKKWL--G------YRDQVLHSGEGPVHVVKWR--TSLIA 195 (807)
Q Consensus 132 ~--~~-~v~~v~~~p~~~~~~~~~l~~g~---~dg~v~l~~~~~~--~------~~~~~~~~~~~~V~~l~~~--~~~la 195 (807)
. .. .|.+++++|+ |..++.-. .++.|.+--..-. + ............++.+.|. +.+++
T Consensus 107 ~~~~~~~I~~l~vSpD-----G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 107 WPGLRGRITALRVSPD-----GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred ccccCCceEEEEECCC-----CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2 22 7999999999 66544443 3456655432111 2 1111122234678899998 45555
Q ss_pred EE
Q 003625 196 WA 197 (807)
Q Consensus 196 ~~ 197 (807)
.+
T Consensus 182 ~~ 183 (253)
T PF10647_consen 182 LG 183 (253)
T ss_pred Ee
Confidence 55
No 452
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.52 E-value=5.8 Score=42.25 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHHHHHHccC---cchhhHhhhccchHHHHHHHHHHHhcChhHHHHHhhhcCCCCCh-HHHHHHHhc-c
Q 003625 550 ELYVIDGHYEKAFSLYADLMK---PYIFDFIENHNLHDAIREKVVQLMLLDCKRAVSLLIQNKDLITP-SEVVTQLLN-A 624 (807)
Q Consensus 550 ~ly~~~~~~~~al~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~~~~~~-~~vi~~l~~-~ 624 (807)
.-|+..|+.++||+|++++.- ..+--+.+-.++++ ++ .||.++|+++++-...+|- ..|++.|.+ +
T Consensus 532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye--------~l-ed~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE--------LL-EDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------Hh-hCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 347899999999999998752 11111111111222 22 5899999999986454443 366776654 1
Q ss_pred cccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh-chHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhc
Q 003625 625 RDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-DLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRM 703 (807)
Q Consensus 625 ~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~-~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~ 703 (807)
+...+......-|.+... -.| ..-+..+-|...|++. -.+|-+.|++.-....|.. .+..--.+-.+.|.
T Consensus 603 dqegdksqafq~~ydsyr-yfp-~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-------~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR-YFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-------SKWQLMIASCFRRS 673 (840)
T ss_pred hcccchhhhhhhhhhccc-ccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH-------HHHHHHHHHHHHhc
Confidence 122223332222222211 112 2335566777778753 2456666666532111111 01111234457889
Q ss_pred CChHHHHHHHHHH
Q 003625 704 GNTKHALAVIINK 716 (807)
Q Consensus 704 g~~~~Al~~~i~~ 716 (807)
|+|+.|+++|-+-
T Consensus 674 gnyqka~d~yk~~ 686 (840)
T KOG2003|consen 674 GNYQKAFDLYKDI 686 (840)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999888653
No 453
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.50 E-value=0.12 Score=55.11 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=97.4
Q ss_pred EEEEecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEE-EeCCCcEEEEeccCCceeEEecCC--
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGS-CSDDGSVVINSLFTDEKMKFDYHR-- 134 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s-~~~Dg~v~iwd~~~~~~~~~~~~~-- 134 (807)
..|.+.+.-+++++.+..+..||-.|+...... .++....++|+.+|..++. +-..+.+.+|++.+.....+....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 357787777889999999999998887654443 3344556889988886544 556789999999886554443222
Q ss_pred ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEe-CCEEEEE-eCCcEEEE
Q 003625 135 PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR-TSLIAWA-NDAGVKVY 205 (807)
Q Consensus 135 ~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~-~~~la~~-~d~~v~iw 205 (807)
.-.-..|++. ....+.|...|.+.++..+ ..+...+...|...+++++|. ..+.+.+ .|..+.+-
T Consensus 119 s~sll~wsKg-----~~el~ig~~~gn~viynhg-tsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 119 SKSLLAWSKG-----TPELVIGNNAGNIVIYNHG-TSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred hHHHHhhccC-----CccccccccccceEEEecc-chhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 2223788887 7888999999999999775 234444444488889999998 3444433 45554433
No 454
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=85.15 E-value=60 Score=36.77 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=42.9
Q ss_pred cCCEEEEEecCCeEEEEec-CCCeeEEecCCCc------cee--EEEEcCCCCEEEEEeCCCcEEEEeccCCcee
Q 003625 63 AERMIALGTHAGTVHILDF-LGNQVKEFPAHTA------AVN--DLSFDVDGEYVGSCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~------~V~--~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~ 128 (807)
.+..+.+++.+|.++-+|. +|+.+.++..... .+. .+... ++..++.++.+|.|+-+|..+++..
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe
Confidence 4566778888999999998 5665554433221 110 11111 2267888889999999999998765
No 455
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.04 E-value=66 Score=35.45 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=78.0
Q ss_pred EEEEecCCEEEEE-ecCC----eEEEEecCCCe-eE-EecCCCcceeEEEEcCCCCEEEEEeCCC-----------cEEE
Q 003625 58 SCVAVAERMIALG-THAG----TVHILDFLGNQ-VK-EFPAHTAAVNDLSFDVDGEYVGSCSDDG-----------SVVI 119 (807)
Q Consensus 58 ~~~s~~~~~la~g-s~dg----~I~i~d~~~~~-~~-~~~~h~~~V~~l~~s~~g~~l~s~~~Dg-----------~v~i 119 (807)
.+++|+|+++|.+ +..| .++++|+.++. +. .+... ....+.|.++|+.|+....+. .|+.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 4577899998876 3333 59999995443 32 11211 123389999998876665433 2778
Q ss_pred EeccCCc---eeEEecCC--c-eEEEEeCCCCCCcCCCEEEEecCCC-e---EEEEEcccC---CccceEeecCC-cCeE
Q 003625 120 NSLFTDE---KMKFDYHR--P-MKAISLDPDYTRKMSRRFVAGGLAG-H---LYLNSKKWL---GYRDQVLHSGE-GPVH 185 (807)
Q Consensus 120 wd~~~~~---~~~~~~~~--~-v~~v~~~p~~~~~~~~~l~~g~~dg-~---v~l~~~~~~---~~~~~~~~~~~-~~V~ 185 (807)
|.+.+.. ...+.... . ...+..+++ +++++.....+ . +.+.+..-. ......+.... +...
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-----~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-----GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-----SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCc-----ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 8887743 23444433 3 567888888 67766543332 2 444444311 12334444433 3334
Q ss_pred EEEEeC-CEEEEEe----CCcEEEEEcCCCc
Q 003625 186 VVKWRT-SLIAWAN----DAGVKVYDAANDQ 211 (807)
Q Consensus 186 ~l~~~~-~~la~~~----d~~v~iwd~~~~~ 211 (807)
.+...+ .+.+.++ .+.|...++....
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 444444 4555443 3445556666543
No 456
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.96 E-value=9.5 Score=45.64 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=84.3
Q ss_pred ceeEEEEcCCCCEEEE--EeCCCcEEEEeccCCc------eeEE-----ecCC--ceEEEEeCCCCCCcCCCEEEEecCC
Q 003625 95 AVNDLSFDVDGEYVGS--CSDDGSVVINSLFTDE------KMKF-----DYHR--PMKAISLDPDYTRKMSRRFVAGGLA 159 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s--~~~Dg~v~iwd~~~~~------~~~~-----~~~~--~v~~v~~~p~~~~~~~~~l~~g~~d 159 (807)
+|..+...+|+...++ .+.+-.|..+|+.+-. ...+ .... -..++.|.|.+ ...+++...|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v----p~n~av~l~d 177 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV----PLNSAVDLSD 177 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc----cchhhhhccc
Confidence 5666677778776443 3444478889987511 1111 1112 45688999985 4567788888
Q ss_pred CeEEEEEcccCCccceEeecCCcCeEEEEEe--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeC
Q 003625 160 GHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQD 236 (807)
Q Consensus 160 g~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 236 (807)
+.|.+............ ..-...+++++|+ |.-++.+ +.|++.-|... .+....+..+.... ...+.+++|-.
T Consensus 178 lsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred cchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC--CcceeEEEEec
Confidence 88887654322222222 1234568999999 6666666 78888777754 45555555554322 45678899975
Q ss_pred CCEEEE
Q 003625 237 DTLLVI 242 (807)
Q Consensus 237 ~~~l~~ 242 (807)
.+.+++
T Consensus 254 t~eflv 259 (1405)
T KOG3630|consen 254 TQEFLV 259 (1405)
T ss_pred ceeEEE
Confidence 544443
No 457
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.63 E-value=47 Score=33.71 Aligned_cols=154 Identities=14% Similarity=0.046 Sum_probs=87.6
Q ss_pred ceeEEEEcCCCCEEEEEeCCC--cEEEEeccCCceeE-EecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEccc
Q 003625 95 AVNDLSFDVDGEYVGSCSDDG--SVVINSLFTDEKMK-FDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 95 ~V~~l~~s~~g~~l~s~~~Dg--~v~iwd~~~~~~~~-~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~ 169 (807)
-...+.|..+|..+-|+|.-| .|+.+|+.++++.. ..... ---.++...+ +.+...=.+|...+||..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d------~l~qLTWk~~~~f~yd~~- 118 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD------KLYQLTWKEGTGFVYDPN- 118 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT------EEEEEESSSSEEEEEETT-
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC------EEEEEEecCCeEEEEccc-
Confidence 346778877888889988877 58889999987653 33332 2334444443 566666677778788775
Q ss_pred CCccceEeecCCcCeEEEEEeCCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCc
Q 003625 170 LGYRDQVLHSGEGPVHVVKWRTSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTY 247 (807)
Q Consensus 170 ~~~~~~~~~~~~~~V~~l~~~~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~ 247 (807)
+-.....+. ..+.=++++..+..+..+ ....+.++|..+.+....+..... ..+....+-+.|.+|.+.+-- ..+.
T Consensus 119 tl~~~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 119 TLKKIGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp TTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE---EEEEEEETTEEEEEETTSSE
T ss_pred cceEEEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 223333332 234556777776555544 678899999888777776554421 111223445666666555544 3455
Q ss_pred EEEEEEeeCC
Q 003625 248 IKIASIKTNQ 257 (807)
Q Consensus 248 i~vw~~~~~~ 257 (807)
|-..|..+|.
T Consensus 197 I~~Idp~tG~ 206 (264)
T PF05096_consen 197 IVRIDPETGK 206 (264)
T ss_dssp EEEEETTT-B
T ss_pred EEEEeCCCCe
Confidence 5555555443
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.59 E-value=3.2 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=26.2
Q ss_pred cceeEEEEcCCC---CEEEEEeCCCcEEEEeccC
Q 003625 94 AAVNDLSFDVDG---EYVGSCSDDGSVVINSLFT 124 (807)
Q Consensus 94 ~~V~~l~~s~~g---~~l~s~~~Dg~v~iwd~~~ 124 (807)
++|.++.|||+. ..|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5888888889999999985
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.84 E-value=76 Score=34.44 Aligned_cols=183 Identities=9% Similarity=0.093 Sum_probs=106.1
Q ss_pred cCCEEEEEecCCeEEEEecCCCe---eEEe-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCce-----eEEecC
Q 003625 63 AERMIALGTHAGTVHILDFLGNQ---VKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK-----MKFDYH 133 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~~~~---~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~-----~~~~~~ 133 (807)
|.+....+...|.+.=|-..|.. ..++ ....++|.++.||+|.+.+|.--.+..|-.++...... .+.+..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 44444455555556666654321 2233 23566999999999999999999999999998854221 123344
Q ss_pred C-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeecCCcCeEEEEEeC--C--EEEEE-eCCcEEEEEc
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--S--LIAWA-NDAGVKVYDA 207 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~~~~~V~~l~~~~--~--~la~~-~d~~v~iwd~ 207 (807)
. .|.+..|+.+ +-++.-+..| +-+|......+..+.+..+...|.--.|+. + +++++ ..+++.=+.+
T Consensus 112 ~~~IlGF~W~~s------~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 112 NANILGFCWTSS------TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred cceeEEEEEecC------eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 4 6999999876 5566666555 445555444566677777877777777772 2 33344 3455555566
Q ss_pred CCCceEEe----eeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCcEEEEEEeeCC
Q 003625 208 ANDQRITF----IERPRGSPRPELLLPHLVWQDDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 208 ~~~~~~~~----i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~i~vw~~~~~~ 257 (807)
+++...+. +..+. ......+.+ +.+..-.+.--|.+++.-++...
T Consensus 185 ~~~~v~kLPkfe~~~p~---~~~~~kp~l--se~d~~L~tVYG~lyvL~l~~~s 233 (657)
T KOG2377|consen 185 RAGTMSKLPKFEIELPA---APKSTKPSL--SERDIALATVYGQLYVLFLRHHS 233 (657)
T ss_pred eeceeeeccceeecCCC---CccCCCCcc--cccceEEEEEeeEEEEEEEeccC
Confidence 65543331 11111 111112222 23443333366777777776554
No 460
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.43 E-value=64 Score=38.75 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCcEEEEeccC-CceeEEecCC--ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCC-ccceEeecCCcCeEEEEE
Q 003625 114 DGSVVINSLFT-DEKMKFDYHR--PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG-YRDQVLHSGEGPVHVVKW 189 (807)
Q Consensus 114 Dg~v~iwd~~~-~~~~~~~~~~--~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~-~~~~~~~~~~~~V~~l~~ 189 (807)
+|.++.|++-. ++-..+-.+. +-.-.|..|. ...+.+|-. ..+++|+..... -.....+.-...|+.+.|
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f-----~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPF-----QGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEecc-----CCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 45566666543 4433332222 2222456676 445555443 489999865221 001111223567899999
Q ss_pred eCCEEEEE-eCCcE--EEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEE-eCCcEEEEEEeeCC
Q 003625 190 RTSLIAWA-NDAGV--KVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 190 ~~~~la~~-~d~~v--~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g-~d~~i~vw~~~~~~ 257 (807)
.+..++.+ ...+| ..|+-..++.+.....+- ..++..+..-+...++.| .-|.+.+..+....
T Consensus 985 ~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~-----pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 985 YGARIVVGDIQESVHFVRYRREDNQLIVFADDPV-----PRHVTALELLDYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred cceEEEEeeccceEEEEEEecCCCeEEEEeCCCc-----cceeeEEEEecCCceeeccccCcEEEEECCCcc
Confidence 97777766 34444 445544555444433221 124555656677778777 67777776665443
No 461
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=82.39 E-value=19 Score=39.54 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 525 LPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
...+..++..+...+++..++-+++.++...++|++|.+.+-+.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555666677777778888888888888887776553
No 462
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.12 E-value=16 Score=37.85 Aligned_cols=56 Identities=25% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHHHHHHhcCC-C-chhHhHHHHHHHHHHhCcccHHHHHhHhhHhhcc
Q 003625 401 AWLLEHGWHEKALAAVEAGQG-R-SELLDEVGSRYLDHLIVERKYAEAASLCPKLLRG 456 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~-~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~ 456 (807)
..++++|+|++|+++.+.... . ...-....+.+++-....++++.|.+.+.+++..
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~ 73 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS 73 (280)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457889999999999854321 1 1112345566666667788899999888877764
No 463
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=82.08 E-value=67 Score=35.12 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=60.7
Q ss_pred CcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCc------eeEEec--CC-ceEEEEeCCCCCCcCCCEEEEecCCCeEE
Q 003625 93 TAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDE------KMKFDY--HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLY 163 (807)
Q Consensus 93 ~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~------~~~~~~--~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~ 163 (807)
...++++.|.++|..++++ .+|.+.. ....+. ...... .. .+.++.|.++ +. ++.++..|.+.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d-----~~-~~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSK-----KE-AWAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCC-----Cc-EEEEECCCcEE
Confidence 4568899999999887665 4555443 333332 222222 22 5889999887 44 45555667765
Q ss_pred EEEcccCCccceEee---cCCcCeEEEEEe--CCEEEEEeCCcEEEE
Q 003625 164 LNSKKWLGYRDQVLH---SGEGPVHVVKWR--TSLIAWANDAGVKVY 205 (807)
Q Consensus 164 l~~~~~~~~~~~~~~---~~~~~V~~l~~~--~~~la~~~d~~v~iw 205 (807)
.... .+..-.... .-......+.|. ++..+.+.+|.|--|
T Consensus 352 ~s~D--~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 352 RSTD--GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EeCC--CCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 5422 233323322 223567788886 577777777776443
No 464
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=81.42 E-value=0.41 Score=38.97 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=1.4
Q ss_pred cccccccCCCceeeee
Q 003625 28 EEEEEEEEEPRLKYQR 43 (807)
Q Consensus 28 ~~~~~~~~~~~l~~~~ 43 (807)
++++++++.|..+|-.
T Consensus 33 dddee~de~p~p~fge 48 (101)
T PF09026_consen 33 DDDEEEDEVPVPEFGE 48 (101)
T ss_dssp -------------HHH
T ss_pred ccccccccccchhHHH
Confidence 3344445667666543
No 465
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=80.65 E-value=3.5 Score=40.06 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHHhch-HHHHHHhhc--CCCCCHHHHHHHHhcCCchhHHHHHHhhc-CChHHHHHHHHHHh
Q 003625 647 HAGKDFHDMQVELYADYDL-KMLLPFLRS--SQHYTLEKAYEICVKRDLLREQVFILGRM-GNTKHALAVIINKL 717 (807)
Q Consensus 647 ~~~~~~~~~l~~ly~~~~~-~kl~~fL~~--~~~y~~~~al~~~~~~~~~~e~~~L~~r~-g~~~~Al~~~i~~l 717 (807)
...+.+...+++.|.+..+ +.+-+.+-+ .+..|++.++++|++++++++.+|++.|. |+|-.=|.-++..+
T Consensus 19 ~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~ll~~i 93 (196)
T PF12816_consen 19 SLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEELLELI 93 (196)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHHHHHH
Confidence 5677888888888876543 455555555 35789999999999999999999999665 99988888877764
No 466
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=80.44 E-value=4.4 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.6
Q ss_pred CceEEEEecCCEEEEEecCCeEEEEe
Q 003625 55 DAASCVAVAERMIALGTHAGTVHILD 80 (807)
Q Consensus 55 ~~i~~~s~~~~~la~gs~dg~I~i~d 80 (807)
+.+.|++...++++++++.+.+++|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 35778888999999999999999984
No 467
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.39 E-value=71 Score=32.77 Aligned_cols=163 Identities=10% Similarity=0.119 Sum_probs=0.0
Q ss_pred ecCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE---EecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEE
Q 003625 89 FPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK---FDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLN 165 (807)
Q Consensus 89 ~~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~---~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~ 165 (807)
+.+-.+.|+++.|+|+.+.|.+....+.-.||=...|++.. +.+-...-++.+..+ +++.++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-----n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-----NQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-----CEEEEEehhcceEEEE
Q ss_pred EcccCC---------ccceEeecCCcCeEEEEEe---CCEEEEEeCCcEEEEEcCCCceEEeeeCCCCCCCC----CCCC
Q 003625 166 SKKWLG---------YRDQVLHSGEGPVHVVKWR---TSLIAWANDAGVKVYDAANDQRITFIERPRGSPRP----ELLL 229 (807)
Q Consensus 166 ~~~~~~---------~~~~~~~~~~~~V~~l~~~---~~~la~~~d~~v~iwd~~~~~~~~~i~~~~~~~~~----~~~~ 229 (807)
...-++ -+.......+..-.+++|+ +.+++.-.-+-+.||.+.................. -.-+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Q ss_pred Ceeeee--CCCEEEEE-eCCcEEEEEEeeC
Q 003625 230 PHLVWQ--DDTLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 230 ~~l~~~--~~~~l~~g-~d~~i~vw~~~~~ 256 (807)
..+.+. .+.+++.+ .++.+.-.+....
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCC
No 468
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=80.18 E-value=95 Score=33.83 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=92.5
Q ss_pred EEEEecCCEEEEEec---CCeEEEEecCCCe-eEEecCCCcceeEEEEcCCCCEEEEEe-CCCcEEEEeccCCceeE---
Q 003625 58 SCVAVAERMIALGTH---AGTVHILDFLGNQ-VKEFPAHTAAVNDLSFDVDGEYVGSCS-DDGSVVINSLFTDEKMK--- 129 (807)
Q Consensus 58 ~~~s~~~~~la~gs~---dg~I~i~d~~~~~-~~~~~~h~~~V~~l~~s~~g~~l~s~~-~Dg~v~iwd~~~~~~~~--- 129 (807)
..++++++.+.++.. ++++.+.|..+.. ..+...-..+ ..++++|+|..+..+. .++.+.+.|..+..+..
T Consensus 121 ~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 121 LAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred EEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 467778877666655 6888888886444 3443322234 7889999999766655 78899999977755553
Q ss_pred ---EecCCceEEEEeCCCCCCcCCC-EEEEecCC--CeEEEEEcccCCccceE-eecCCcCeEEEEEe--CCEEEEE--e
Q 003625 130 ---FDYHRPMKAISLDPDYTRKMSR-RFVAGGLA--GHLYLNSKKWLGYRDQV-LHSGEGPVHVVKWR--TSLIAWA--N 198 (807)
Q Consensus 130 ---~~~~~~v~~v~~~p~~~~~~~~-~l~~g~~d--g~v~l~~~~~~~~~~~~-~~~~~~~V~~l~~~--~~~la~~--~ 198 (807)
.........++++|+ +. ..++...+ +.+...+.. .+..... .......-..+..+ |..+... .
T Consensus 200 ~~~~~~~~~P~~i~v~~~-----g~~~yV~~~~~~~~~v~~id~~-~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 200 GSLVGVGTGPAGIAVDPD-----GNRVYVANDGSGSNNVLKIDTA-TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccccccCCCCceEEECCC-----CCEEEEEeccCCCceEEEEeCC-CceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 222335567889998 55 44444443 466655543 1111111 11111122334444 6666555 3
Q ss_pred CCcEEEEEcCCCceEEeeeCC
Q 003625 199 DAGVKVYDAANDQRITFIERP 219 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~~ 219 (807)
.+.+.+.|..+......+...
T Consensus 274 ~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 274 GGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCeEEEEeCCCCceeeeeccc
Confidence 578888888887777765444
No 469
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=79.93 E-value=84 Score=33.02 Aligned_cols=130 Identities=14% Similarity=0.060 Sum_probs=76.1
Q ss_pred cceeEEEEcCCCCEEEEEeC-----C----CcEEEEecc-CCceeEE-ecCC-ceEEEEeCCCCCCcCCCEEEEecC-CC
Q 003625 94 AAVNDLSFDVDGEYVGSCSD-----D----GSVVINSLF-TDEKMKF-DYHR-PMKAISLDPDYTRKMSRRFVAGGL-AG 160 (807)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~-----D----g~v~iwd~~-~~~~~~~-~~~~-~v~~v~~~p~~~~~~~~~l~~g~~-dg 160 (807)
..-+.+...|+|.+.++... . ..-.+|-+. .+...++ ..+- .-+.++|||+ ++.+..... .+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpD-----g~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPD-----GKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCC-----CCEEEEEeCCCC
Confidence 35577888999998766544 1 112344444 3444443 3323 6789999999 666666554 35
Q ss_pred eEEEEEcc-cCC----ccceEee-cCCcCeEEEEEe--CCEEEEE-eCC-cEEEEEcCCCceEEeeeCCCCCCCCCCCCC
Q 003625 161 HLYLNSKK-WLG----YRDQVLH-SGEGPVHVVKWR--TSLIAWA-NDA-GVKVYDAANDQRITFIERPRGSPRPELLLP 230 (807)
Q Consensus 161 ~v~l~~~~-~~~----~~~~~~~-~~~~~V~~l~~~--~~~la~~-~d~-~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~ 230 (807)
.+.-++.. ..+ ....... ...+..-+++.. |.+-+++ .++ .|.+|+.. ++.+..+..|.. .++
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~------~~t 258 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK------RPT 258 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC------CCc
Confidence 56555432 111 1112222 234555566666 6777555 343 89999988 888888877742 355
Q ss_pred eeeee
Q 003625 231 HLVWQ 235 (807)
Q Consensus 231 ~l~~~ 235 (807)
+++|-
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 66664
No 470
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=79.73 E-value=96 Score=33.61 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=39.9
Q ss_pred hHHHHHHhcccHHHHHHHHHhcCCCc----hhHhHHHHHHHHHHhCcccHHHHHhHhhHhhc
Q 003625 398 DHIAWLLEHGWHEKALAAVEAGQGRS----ELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (807)
Q Consensus 398 d~i~~ll~~~~~~~Al~~~~~~~~~~----~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~ 455 (807)
.....+..+|+|++|+.+.+...... ..........+..++..|+|+.|...+.+.+.
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 45577888999999998876543311 11223445556677788999999888877765
No 471
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.60 E-value=3.5 Score=32.43 Aligned_cols=57 Identities=21% Similarity=0.110 Sum_probs=43.3
Q ss_pred HHHHhcccHHHHHHHHHhcCC-CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccCh
Q 003625 401 AWLLEHGWHEKALAAVEAGQG-RSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSA 458 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~ 458 (807)
..++++++|++|+..++.... .++ -......++.-++..|+|.+|...+...+..++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467899999999999976543 222 234667788889999999999999888776433
No 472
>PRK11189 lipoprotein NlpI; Provisional
Probab=78.82 E-value=8.6 Score=40.29 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 544 LKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
-+..++..|...|++++|+.++-+-
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667889999999999999998764
No 473
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.74 E-value=10 Score=37.66 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=23.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEeccCCce
Q 003625 101 FDVDGEYVGSCSDDGSVVINSLFTDEK 127 (807)
Q Consensus 101 ~s~~g~~l~s~~~Dg~v~iwd~~~~~~ 127 (807)
+..+++++++...+|.+++||+.++++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~ 44 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKA 44 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCee
Confidence 456789999999999999999998665
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.66 E-value=7 Score=44.71 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=70.1
Q ss_pred CceeeeecCCCCccccCCCceEEEEecCCEEEEEec----CCeEEEEecCCCeeEEecCCCcceeEEEEcCCCCEEEEEe
Q 003625 37 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTH----AGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCS 112 (807)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~----dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g~~l~s~~ 112 (807)
|.+.|.-..|.+..+..+..+.||--+..+.++|.. .+.+++|...|..-.....-++-=+.++|-|+|..++|-+
T Consensus 186 ptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~ 265 (1243)
T COG5290 186 PTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIG 265 (1243)
T ss_pred CCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeec
Confidence 444444444555555555556677666677777654 2456777766554222222333335589999999999988
Q ss_pred CCCc-----EEEEeccC---Ccee-EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE
Q 003625 113 DDGS-----VVINSLFT---DEKM-KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS 166 (807)
Q Consensus 113 ~Dg~-----v~iwd~~~---~~~~-~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~ 166 (807)
.||. |..+.-++ |+.. .......+..++|+-. +..++.+ ....+.+|.
T Consensus 266 td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~-----s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 266 TDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLL-----STVLAVA-EGNLLKLWT 322 (1243)
T ss_pred cCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHH-----HHHHHHh-hcceEEEEE
Confidence 6653 55554332 3331 2222236677788766 3333333 334788885
No 475
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.39 E-value=1.1e+02 Score=33.55 Aligned_cols=187 Identities=15% Similarity=0.075 Sum_probs=0.0
Q ss_pred ecCCEEEEEecCCeEEEEecCCCeeEEecCCCcceeEEEEcCCC---------CEEEEEeCCCcEEEEe-----------
Q 003625 62 VAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDG---------EYVGSCSDDGSVVINS----------- 121 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~l~~s~~g---------~~l~s~~~Dg~v~iwd----------- 121 (807)
++...+++|..+|.|++|..+|..+..-.-|.++|..+.+.... +-|..... +.|.+.|
T Consensus 77 ~dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL~~~L~~~ 155 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSLFSVLRAC 155 (415)
T ss_pred CCcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHHHHHHHHH
Q ss_pred ----------------ccCCceeEEecCC--ceEEEEeCCCC----------------------CCcCCCEEEEecCCCe
Q 003625 122 ----------------LFTDEKMKFDYHR--PMKAISLDPDY----------------------TRKMSRRFVAGGLAGH 161 (807)
Q Consensus 122 ----------------~~~~~~~~~~~~~--~v~~v~~~p~~----------------------~~~~~~~l~~g~~dg~ 161 (807)
...-...++.... .+..+++.--. .......++++|.+-.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~G~~P~ 235 (415)
T PF14655_consen 156 RNQVARGAASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITVGSSPF 235 (415)
T ss_pred HHhhhhhhhcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCCcceEEEEEecCCce
Q ss_pred EEEEE----------------------------------------------------cccCCccceEeecCCcCeEEEEE
Q 003625 162 LYLNS----------------------------------------------------KKWLGYRDQVLHSGEGPVHVVKW 189 (807)
Q Consensus 162 v~l~~----------------------------------------------------~~~~~~~~~~~~~~~~~V~~l~~ 189 (807)
+-.+. ..........+......+.++..
T Consensus 236 v~f~~~~e~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~ 315 (415)
T PF14655_consen 236 VSFYYASEGSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICL 315 (415)
T ss_pred EEEEEccCCCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEE
Q ss_pred e--CCEEEEE-eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-------C--------------CCEEEEE--
Q 003625 190 R--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-------D--------------DTLLVIG-- 243 (807)
Q Consensus 190 ~--~~~la~~-~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-------~--------------~~~l~~g-- 243 (807)
+ +++.|++ +=|.|.++|+.++..++.++.-.+. .+.|- . ...|++=
T Consensus 316 sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--------qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 316 SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--------QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--------eEEEEEeecccccccccccccCCCCcceEEEEEEec
Q ss_pred eCCcEEEEEEeeCC
Q 003625 244 WGTYIKIASIKTNQ 257 (807)
Q Consensus 244 ~d~~i~vw~~~~~~ 257 (807)
.-|.|.||.++.+.
T Consensus 388 rRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 388 RRGILEVWSMRQGP 401 (415)
T ss_pred cCCeEEEEecCCCC
No 476
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=78.26 E-value=96 Score=38.42 Aligned_cols=74 Identities=8% Similarity=-0.090 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhhCCCCChhHHHHHHHHHHHh-chHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHH
Q 003625 631 RYFLHLYLHALFEVNPHAGKDFHDMQVELYADY-DLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHA 709 (807)
Q Consensus 631 ~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly~~~-~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~A 709 (807)
...++..|+.|.+..+ .+......|.++|+.. ..+++..+.+ . .++ ....++-..+-.|-+.|++++|
T Consensus 198 w~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~~~a~al~~-~-------~lk--~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 198 WSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLDDRLLALQS-Q-------GIF--TDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCHHHHHHHhc-h-------hcc--cCHHHHHHHHHHHHHCCCHHHH
Confidence 3446678888888876 5567777888888873 5555555521 1 222 3334445666667777777777
Q ss_pred HHHHHH
Q 003625 710 LAVIIN 715 (807)
Q Consensus 710 l~~~i~ 715 (807)
.+++-.
T Consensus 267 ~~~L~~ 272 (987)
T PRK09782 267 QHYLIE 272 (987)
T ss_pred HHHHHh
Confidence 776665
No 477
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.31 E-value=25 Score=35.65 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=41.6
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEeccCC--ceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecC
Q 003625 100 SFDVDGEYVGSCSDD-----GSVVINSLFTD--EKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGL 158 (807)
Q Consensus 100 ~~s~~g~~l~s~~~D-----g~v~iwd~~~~--~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~ 158 (807)
.|||||.+|...-.| |.|-|||.+.+ ++-.+..+. ....+.|.++ |+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-----GrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-----GRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-----CcEEEEeCC
Confidence 589999998876554 67889999863 344567777 7788999999 888877653
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.86 E-value=1.2e+02 Score=33.27 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=78.3
Q ss_pred CCEEEEEecCCeEEEEecCCCe-----eEEecCCCcceeEEEEcC----CCCEEEEEeCCCcEEEEeccC--Cc------
Q 003625 64 ERMIALGTHAGTVHILDFLGNQ-----VKEFPAHTAAVNDLSFDV----DGEYVGSCSDDGSVVINSLFT--DE------ 126 (807)
Q Consensus 64 ~~~la~gs~dg~I~i~d~~~~~-----~~~~~~h~~~V~~l~~s~----~g~~l~s~~~Dg~v~iwd~~~--~~------ 126 (807)
...|++|+..|.++||+..+.. +.--..-..+|..+..-. .....++.-.-..+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 3589999999999999984322 111122445777776432 122233334556777777632 21
Q ss_pred --ee---EEecCCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEee--cCCcCeEEEEEeCCEEEEEeC
Q 003625 127 --KM---KFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLH--SGEGPVHVVKWRTSLIAWAND 199 (807)
Q Consensus 127 --~~---~~~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~--~~~~~V~~l~~~~~~la~~~d 199 (807)
+. .....+....+++-|--..++...+++-+.||.+.+++..-.. -...+. -.+||+.-+.-...+++++++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 11 1222233344444332111123678889999999999764111 011111 235565444433566666677
Q ss_pred CcEEEEEcC
Q 003625 200 AGVKVYDAA 208 (807)
Q Consensus 200 ~~v~iwd~~ 208 (807)
..+.-|...
T Consensus 196 ~~l~~Yky~ 204 (418)
T PF14727_consen 196 WTLECYKYQ 204 (418)
T ss_pred eeEEEecHH
Confidence 788777653
No 479
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.65 E-value=59 Score=34.97 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=46.4
Q ss_pred EEEEecCCEEEEEec-C--CeEEEEecCCCeeEEecCCCc-ceeEEEEcCCCCEEEEEeCCCcEEEEeccCCcee-EEec
Q 003625 58 SCVAVAERMIALGTH-A--GTVHILDFLGNQVKEFPAHTA-AVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDY 132 (807)
Q Consensus 58 ~~~s~~~~~la~gs~-d--g~I~i~d~~~~~~~~~~~h~~-~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~-~~~~ 132 (807)
.||..+|+.|+.++. + ..+++.|+.+..+.++....+ ......++|+++.++-...+..++--|+.+.+.. .+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 378888987666655 4 467777887777777765442 2335667899998877766778888899986654 3455
Q ss_pred CC-ceEEEEeC
Q 003625 133 HR-PMKAISLD 142 (807)
Q Consensus 133 ~~-~v~~v~~~ 142 (807)
.. .+-...|.
T Consensus 121 p~~~~g~gt~v 131 (386)
T PF14583_consen 121 PDDWKGYGTWV 131 (386)
T ss_dssp -TTEEEEEEEE
T ss_pred Cccccccccee
Confidence 55 44445554
No 480
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=76.27 E-value=1.4e+02 Score=33.82 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003625 539 SMTDALKEALAELYVIDGHYEKAFSLYA 566 (807)
Q Consensus 539 ~~~~~~~~~l~~ly~~~~~~~~al~~~~ 566 (807)
......+..|+.+|...|++++|-.++-
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e 307 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCE 307 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 3445678889999999999999988753
No 481
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=15 Score=41.49 Aligned_cols=129 Identities=17% Similarity=0.282 Sum_probs=85.7
Q ss_pred hccchHHHHHHHHHHHhcChh-HHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCC-CChhHHHHH
Q 003625 579 NHNLHDAIREKVVQLMLLDCK-RAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPH-AGKDFHDMQ 656 (807)
Q Consensus 579 ~~~~~~~~~~~~~~l~~~~~~-~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~-~~~~~~~~l 656 (807)
+..+.+++++-++..++++.+ +|+++|++-.. .+.++++... ++-.-.+.||..+..--|. .+..+-.+-
T Consensus 174 ~~dl~~l~~~iV~f~mkHNAE~eAiDlL~Eve~---id~l~~~Vd~-----~n~~RvclYl~sc~~~lP~Pdd~~ll~~a 245 (878)
T KOG2005|consen 174 KADLLDLVQEIVPFHMKHNAEFEAIDLLMEVEG---IDLLLDYVDE-----HNYQRVCLYLTSCVPLLPGPDDVALLRTA 245 (878)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHhhh---HhHHHHHhhh-----hhHHHHHHHHHHHhhcCCCchhhHHHHHH
Confidence 345778888899999999965 69999997422 3566666654 2344556899998765543 233477888
Q ss_pred HHHHHHhc--hHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChH-----HHHHHHHH
Q 003625 657 VELYADYD--LKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTK-----HALAVIIN 715 (807)
Q Consensus 657 ~~ly~~~~--~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~-----~Al~~~i~ 715 (807)
..+|++|. ++.|.--++-.+-=-+.+...-|...-+...++|+++|.|-+- +++.-++.
T Consensus 246 ~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~s 311 (878)
T KOG2005|consen 246 LKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILS 311 (878)
T ss_pred HHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHc
Confidence 88899885 3344333333332224455556667778899999999999764 44555554
No 482
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.67 E-value=22 Score=39.19 Aligned_cols=106 Identities=21% Similarity=0.241 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHhcChh-HHHHHhhhcCCCCChHHHHHHHhcccccCchhhHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 003625 582 LHDAIREKVVQLMLLDCK-RAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNPHAGKDFHDMQVELY 660 (807)
Q Consensus 582 ~~~~~~~~~~~l~~~~~~-~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~~~~yLe~l~~~~~~~~~~~~~~l~~ly 660 (807)
+.+...+-++.+++++.+ .|+++|++-.. .++|+++..- ++-.-.+.||+.++.-.|.
T Consensus 179 t~~l~l~ivpfflkHNaE~dAiDlL~Evg~---Iekv~~fVd~-----~n~~RvclYl~~cv~llp~------------- 237 (881)
T COG5110 179 TRDLGLEIVPFFLKHNAEFDAIDLLVEVGG---IEKVLDFVDT-----HNYNRVCLYLEDCVPLLPP------------- 237 (881)
T ss_pred HHHHHHHHhHHHHhcccchHHHHHHHHhcc---hhhhhhhhcc-----cchhHHHHHHHHhhccCCC-------------
Confidence 445566677788888865 58888887422 3667766654 2344456788877654441
Q ss_pred HHhchHHHHHHhhcCCCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCChhH
Q 003625 661 ADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDDEL 735 (807)
Q Consensus 661 ~~~~~~kl~~fL~~~~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~~l 735 (807)
..-..|| +-.--+|-|||++.+|+..+|. +++-+++++||+...|+.+
T Consensus 238 -----pedVa~l---------------------~ta~~IYlk~~~lt~av~~aiR-l~~~~~i~e~~~a~~Dp~~ 285 (881)
T COG5110 238 -----PEDVALL---------------------ETALKIYLKMGDLTRAVVGAIR-LQKSKEIIEYVRAIEDPDY 285 (881)
T ss_pred -----hHHHHHH---------------------HHHHHHHHhhhHHHHHHHHHHh-cccHHHHHHHHHhccChHH
Confidence 1111111 2223368899999999999996 6999999999998887744
No 483
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.54 E-value=72 Score=36.94 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=41.4
Q ss_pred hHHHHHHhhcC---CCCCHHHHHHHHhcCCchhHHHHHHhhcCChHHHHHHHHHHhCCHHHHHHHHhhcCCh
Q 003625 665 LKMLLPFLRSS---QHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDIEEAVEFVNMQHDD 733 (807)
Q Consensus 665 ~~kl~~fL~~~---~~y~~~~al~~~~~~~~~~e~~~L~~r~g~~~~Al~~~i~~l~d~~~A~~~~~~~~~~ 733 (807)
+..+-.+|..- +.-++++++++|.+.++.+...-++..+|+.- +.+ |++-.|+.++.+.+|.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~------~~~-~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL------LKE-GRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH------HHH-HHHHHHHHHHH-----
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HHC-CCHHHHHHHHHHCCCH
Confidence 56666777662 45689999999999999999888887777652 222 5677777777777655
No 484
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=75.50 E-value=9.5 Score=26.56 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=23.7
Q ss_pred cCeEEEEEe---C--CEEEEE-eCCcEEEEEcCC
Q 003625 182 GPVHVVKWR---T--SLIAWA-NDAGVKVYDAAN 209 (807)
Q Consensus 182 ~~V~~l~~~---~--~~la~~-~d~~v~iwd~~~ 209 (807)
|.|.+++|+ + .+++++ ..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578899999 2 699999 578899999985
No 485
>PHA03098 kelch-like protein; Provisional
Probab=75.10 E-value=56 Score=37.55 Aligned_cols=147 Identities=14% Similarity=0.032 Sum_probs=68.5
Q ss_pred EEEecCCEEEEEecC-----CeEEEEecCCCeeEEecC---CCcceeEEEEcCCCCEEEEEeCC------CcEEEEeccC
Q 003625 59 CVAVAERMIALGTHA-----GTVHILDFLGNQVKEFPA---HTAAVNDLSFDVDGEYVGSCSDD------GSVVINSLFT 124 (807)
Q Consensus 59 ~~s~~~~~la~gs~d-----g~I~i~d~~~~~~~~~~~---h~~~V~~l~~s~~g~~l~s~~~D------g~v~iwd~~~ 124 (807)
+...++...+.|+.+ ..+..||.....-..... ..... ++ ..-+|...+.||.+ ..+..||..+
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 344577788888865 346677775433211111 11111 11 12356666777632 3477888776
Q ss_pred CceeEE---ecCCceEEEEeCCCCCCcCCCEEEEecCCC--------eEEEEEcccCC-ccceEeecCCcCeEEEEEeCC
Q 003625 125 DEKMKF---DYHRPMKAISLDPDYTRKMSRRFVAGGLAG--------HLYLNSKKWLG-YRDQVLHSGEGPVHVVKWRTS 192 (807)
Q Consensus 125 ~~~~~~---~~~~~v~~v~~~p~~~~~~~~~l~~g~~dg--------~v~l~~~~~~~-~~~~~~~~~~~~V~~l~~~~~ 192 (807)
+.-... ...+.-.+++.. + +..++.||.++ .+..||..... ...............+.+.+.
T Consensus 416 ~~W~~~~~~p~~r~~~~~~~~-~-----~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 489 (534)
T PHA03098 416 NKWSKGSPLPISHYGGCAIYH-D-----GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNK 489 (534)
T ss_pred CeeeecCCCCccccCceEEEE-C-----CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCE
Confidence 443322 111211122222 2 46778877542 25566543111 011111111112223334466
Q ss_pred EEEEEe------CCcEEEEEcCCCceE
Q 003625 193 LIAWAN------DAGVKVYDAANDQRI 213 (807)
Q Consensus 193 ~la~~~------d~~v~iwd~~~~~~~ 213 (807)
+.+.|+ .+.+.+||..+++..
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 655552 236788888776654
No 486
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.01 E-value=1.5e+02 Score=33.49 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=41.5
Q ss_pred ecCCEEEEEecCC------------------eEEEEec-CCCeeEEecC--CCc----ceeEEEE----cCCCC---EEE
Q 003625 62 VAERMIALGTHAG------------------TVHILDF-LGNQVKEFPA--HTA----AVNDLSF----DVDGE---YVG 109 (807)
Q Consensus 62 ~~~~~la~gs~dg------------------~I~i~d~-~~~~~~~~~~--h~~----~V~~l~~----s~~g~---~l~ 109 (807)
+.+..+++|+.+| .|.-+|. +|+....++. |.. ......+ .-+|. .++
T Consensus 226 ~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~ 305 (488)
T cd00216 226 PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIV 305 (488)
T ss_pred CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEE
Confidence 3467788887765 7888888 4666555432 210 0000011 12343 577
Q ss_pred EEeCCCcEEEEeccCCcee
Q 003625 110 SCSDDGSVVINSLFTDEKM 128 (807)
Q Consensus 110 s~~~Dg~v~iwd~~~~~~~ 128 (807)
.++.+|.+...|..+++..
T Consensus 306 ~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 306 HAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EECCCceEEEEECCCCcEe
Confidence 8888999999999998764
No 487
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=74.48 E-value=1.1e+02 Score=33.47 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=70.8
Q ss_pred EEecCCEEEEE--e----cCCeEEEEecCCC-eeEEecCC---CcceeEEEEcCCCCEEEEEeC----------------
Q 003625 60 VAVAERMIALG--T----HAGTVHILDFLGN-QVKEFPAH---TAAVNDLSFDVDGEYVGSCSD---------------- 113 (807)
Q Consensus 60 ~s~~~~~la~g--s----~dg~I~i~d~~~~-~~~~~~~h---~~~V~~l~~s~~g~~l~s~~~---------------- 113 (807)
+-|+|++++++ . .-|-+.++|-++. ....+... ..--+.+-|.|..+.++|..-
T Consensus 137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 44678777764 2 2356777777633 33444332 223456778888888877652
Q ss_pred ----CCcEEEEeccCCcee-EEecCC---ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc----ccCCccceEeecC-
Q 003625 114 ----DGSVVINSLFTDEKM-KFDYHR---PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK----KWLGYRDQVLHSG- 180 (807)
Q Consensus 114 ----Dg~v~iwd~~~~~~~-~~~~~~---~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~----~~~~~~~~~~~~~- 180 (807)
..++.+||+.+.+.. ++.... .+..|.|..+.. ...-|+.+...++|..|-. .|..+++-.+...
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~--~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD--ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCC--ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 246999999997765 455543 455676654411 2345666666667776644 2322332222210
Q ss_pred ----------------CcCeEEEEEe--CCEEEEE--eCCcEEEEEcCC
Q 003625 181 ----------------EGPVHVVKWR--TSLIAWA--NDAGVKVYDAAN 209 (807)
Q Consensus 181 ----------------~~~V~~l~~~--~~~la~~--~d~~v~iwd~~~ 209 (807)
.+-|+.|..+ .++|..+ ..|.|+.||+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 2346788787 6777766 599999999985
No 488
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=74.36 E-value=17 Score=37.65 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc
Q 003625 544 LKEALAELYVIDGHYEKAFSLYADL 568 (807)
Q Consensus 544 ~~~~l~~ly~~~~~~~~al~~~~~~ 568 (807)
+...++..|...|++++|+.++.+.
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccccc
Confidence 6677777888888888888877764
No 489
>PHA02790 Kelch-like protein; Provisional
Probab=74.32 E-value=74 Score=35.96 Aligned_cols=168 Identities=8% Similarity=-0.037 Sum_probs=79.7
Q ss_pred CCCEEEEEeCCC-----cEEEEeccCCceeEE---ecCC-ceEEEEeCCCCCCcCCCEEEEecCCC--eEEEEEcccCC-
Q 003625 104 DGEYVGSCSDDG-----SVVINSLFTDEKMKF---DYHR-PMKAISLDPDYTRKMSRRFVAGGLAG--HLYLNSKKWLG- 171 (807)
Q Consensus 104 ~g~~l~s~~~Dg-----~v~iwd~~~~~~~~~---~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg--~v~l~~~~~~~- 171 (807)
++..++.||.++ .+..||..++.-... ...+ ....++. + +...++||.++ .+..|+.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~-----~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--N-----NKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--C-----CEEEEECCcCCCCceEEEECCCCeE
Confidence 355567777543 355677766543322 2222 2222222 3 57888888644 46666643111
Q ss_pred ccceEeecCCcCeEEEEEeCCEEEEE-eC---CcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeeeCCCEEEEEeCCc
Q 003625 172 YRDQVLHSGEGPVHVVKWRTSLIAWA-ND---AGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLLVIGWGTY 247 (807)
Q Consensus 172 ~~~~~~~~~~~~V~~l~~~~~~la~~-~d---~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~l~~g~d~~ 247 (807)
.....+.........+...|.+.+.| .+ ..+-.||..+++....-..+ . .....+++-.++.+.++| |.
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~--~---~r~~~~~~~~~~~IYv~G--G~ 416 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY--Y---PHYKSCALVFGRRLFLVG--RN 416 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC--C---ccccceEEEECCEEEEEC--Cc
Confidence 11111111112223344446665554 22 35778888776654321111 0 111122322366666666 45
Q ss_pred EEEEEEeeCCCcCCCCccccCCcceEEEEEEeeeceEEEeeeecCCceEEEEe
Q 003625 248 IKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY 300 (807)
Q Consensus 248 i~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~gi~~~~~~l~vl~~ 300 (807)
+.+||..++..... .+++ ....-.|++.+++.+.++|.
T Consensus 417 ~e~ydp~~~~W~~~----~~m~-----------~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 417 AEFYCESSNTWTLI----DDPI-----------YPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred eEEecCCCCcEeEc----CCCC-----------CCccccEEEEECCEEEEECC
Confidence 66777765542211 1111 11222456777788877775
No 490
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=74.26 E-value=55 Score=31.81 Aligned_cols=55 Identities=13% Similarity=-0.119 Sum_probs=36.5
Q ss_pred HHHHhcccHHHHHHHHHhcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhc
Q 003625 401 AWLLEHGWHEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLR 455 (807)
Q Consensus 401 ~~ll~~~~~~~Al~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~ 455 (807)
..++..|+|++|+..++................+..++..+++++|...+.+.+.
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5577899999999988653221111122444456667788999999888766654
No 491
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=73.73 E-value=2.1e+02 Score=34.47 Aligned_cols=186 Identities=11% Similarity=0.078 Sum_probs=100.4
Q ss_pred EEecCCEEEEEecCCeEEEEecCCCeeEEec--CCCcceeEEEEcCCC------CEEEEEeCCCcEEEEeccC-CceeE-
Q 003625 60 VAVAERMIALGTHAGTVHILDFLGNQVKEFP--AHTAAVNDLSFDVDG------EYVGSCSDDGSVVINSLFT-DEKMK- 129 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~--~h~~~V~~l~~s~~g------~~l~s~~~Dg~v~iwd~~~-~~~~~- 129 (807)
++.+...+++++.++.+...+.....++... .....|.|+.++|-| ++++.|..+..+.+--... .....
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 4445567777777777777777422233222 234579999999742 2677887776665543332 22221
Q ss_pred --Eec---CCceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccC-C--ccceEeecCCcCeEEEEEe---CCEEEEEe
Q 003625 130 --FDY---HRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWL-G--YRDQVLHSGEGPVHVVKWR---TSLIAWAN 198 (807)
Q Consensus 130 --~~~---~~~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~-~--~~~~~~~~~~~~V~~l~~~---~~~la~~~ 198 (807)
+.. ++.|--.++--+ ..++.++..||.+..+..... + ...+..+-+..|+.=-.|+ ++.+.+++
T Consensus 575 ~~l~~~~iPRSIl~~~~e~d-----~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s 649 (1096)
T KOG1897|consen 575 EQLSGEIIPRSILLTTFEGD-----IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS 649 (1096)
T ss_pred eccCCCccchheeeEEeecc-----ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC
Confidence 122 223434444444 579999999999887754311 1 1111122234556555666 46677778
Q ss_pred CCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEEeCCcEEEEEEee
Q 003625 199 DAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKT 255 (807)
Q Consensus 199 d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~i~vw~~~~ 255 (807)
|+-.-+|..+..-+...+..+. ...+|.+.-+ -+..++++..+.+++..+..
T Consensus 650 drP~viY~~n~kLv~spls~ke-----v~~~c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 650 DRPTVIYSSNGKLVYSPLSLKE-----VNHMCPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred CCCEEEEecCCcEEEeccchHH-----hhhhcccccccCCceEEEecCCceEEEEecc
Confidence 8888888866543333322221 0112222111 23456666666666665543
No 492
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=72.91 E-value=34 Score=39.89 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred cCCEEEEEecCCeEEEEecC--------C----C---------eeEEecCCCcceeEEEEc--CCCCEEEEEeCCCcEEE
Q 003625 63 AERMIALGTHAGTVHILDFL--------G----N---------QVKEFPAHTAAVNDLSFD--VDGEYVGSCSDDGSVVI 119 (807)
Q Consensus 63 ~~~~la~gs~dg~I~i~d~~--------~----~---------~~~~~~~h~~~V~~l~~s--~~g~~l~s~~~Dg~v~i 119 (807)
+...|++|+.||.|.+|... . . +...+. -..++++++++ ...+.||.++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 45689999999999999641 1 0 001111 23478999998 77888888888888888
Q ss_pred EeccC--CceeE---EecCCceEEEEeCCCCCCcCCC-EEEEecCCCeEEEEEccc
Q 003625 120 NSLFT--DEKMK---FDYHRPMKAISLDPDYTRKMSR-RFVAGGLAGHLYLNSKKW 169 (807)
Q Consensus 120 wd~~~--~~~~~---~~~~~~v~~v~~~p~~~~~~~~-~l~~g~~dg~v~l~~~~~ 169 (807)
|-... .+... ......|-+|+|-++.....|. .+++++-.|.+.+|+..|
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~~ 247 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIKF 247 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEEE
Confidence 86544 22211 1222278899998773222233 788899999998887753
No 493
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=72.73 E-value=43 Score=37.74 Aligned_cols=55 Identities=18% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHHHhcccHHHHHHHHHhcCC--------CchhHhHHHHHHHHHHhCcccHHHHHhHhhHhh
Q 003625 400 IAWLLEHGWHEKALAAVEAGQG--------RSELLDEVGSRYLDHLIVERKYAEAASLCPKLL 454 (807)
Q Consensus 400 i~~ll~~~~~~~Al~~~~~~~~--------~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~ 454 (807)
...+..+|+|+.|..+++.... ....+......++..+.+.++|.+|+.++.+.+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3678889999999999865432 122334455568888999999999988766544
No 494
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.53 E-value=2.1e+02 Score=34.00 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=50.8
Q ss_pred cceeEEEEcCCCCEEEEEeCCCcEEE-----Eecc----CCc----eeEE--------ecCC-ceEEEEeCCCCCCcCCC
Q 003625 94 AAVNDLSFDVDGEYVGSCSDDGSVVI-----NSLF----TDE----KMKF--------DYHR-PMKAISLDPDYTRKMSR 151 (807)
Q Consensus 94 ~~V~~l~~s~~g~~l~s~~~Dg~v~i-----wd~~----~~~----~~~~--------~~~~-~v~~v~~~p~~~~~~~~ 151 (807)
-.|..|.++|+|++++-.|..|.+.+ |... .++ |.++ .... .|..+.|||.-. ++.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--SDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC--CCC
Confidence 36788999999999999998776544 2111 111 2222 1223 889999999721 247
Q ss_pred EEEEecCCCeEEEEEcc
Q 003625 152 RFVAGGLAGHLYLNSKK 168 (807)
Q Consensus 152 ~l~~g~~dg~v~l~~~~ 168 (807)
.+++=+.|+++++|+..
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 88888889999999985
No 495
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=72.36 E-value=22 Score=42.17 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=53.6
Q ss_pred EEEEEe-cCCeEEEEecCCCeeEEe-cCCCcceeEEEEcCCCCEEEE-EeCCC-----cEEEEeccC--CceeEEecCC-
Q 003625 66 MIALGT-HAGTVHILDFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGS-CSDDG-----SVVINSLFT--DEKMKFDYHR- 134 (807)
Q Consensus 66 ~la~gs-~dg~I~i~d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s-~~~Dg-----~v~iwd~~~--~~~~~~~~~~- 134 (807)
.||.-. ..|.+.+-|.+|...+.+ ..++.+|.+-+|||||++|+- .+..+ .|++-++.+ ....++....
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 344444 446888999988776666 567889999999999999987 45444 488888887 3344555444
Q ss_pred ceEEEEeCCC
Q 003625 135 PMKAISLDPD 144 (807)
Q Consensus 135 ~v~~v~~~p~ 144 (807)
.|..-...++
T Consensus 400 aiprwrv~e~ 409 (912)
T TIGR02171 400 AIPRWRVLEN 409 (912)
T ss_pred cccceEecCC
Confidence 4444444444
No 496
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=71.66 E-value=73 Score=29.01 Aligned_cols=119 Identities=22% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHhcccHHHHHHHHH----hcCCCchhHhHHHHHHHHHHhCcccHHHHHhHhhHhhccChhhHHHHHHHHhhcCCCCccc
Q 003625 403 LLEHGWHEKALAAVE----AGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLV 478 (807)
Q Consensus 403 ll~~~~~~~Al~~~~----~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~we~~i~~F~~~~~l~~L~ 478 (807)
.+..+....+-..++ .++... .-.......+..++..|+|++|...+..++.....
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------------- 80 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANAPD------------------- 80 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------------------
Confidence 345666666655332 222221 12234444677788999999999997777663211
Q ss_pred ccCcCCCCCCCHHHHHHHHHHHhcCCCChHHHHHHhhcCCcCCCChHHHHHHHHHhhhcCCChHHHHHHHHHHHHhcCCH
Q 003625 479 PYMPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHY 558 (807)
Q Consensus 479 ~yl~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 558 (807)
+.+.+...-.+-..++... +.+.-+..+..-++.- -.....+....+|...|++
T Consensus 81 -------~~l~~~a~l~LA~~~~~~~-~~d~Al~~L~~~~~~~------------------~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 81 -------PELKPLARLRLARILLQQG-QYDEALATLQQIPDEA------------------FKALAAELLGDIYLAQGDY 134 (145)
T ss_pred -------HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHhccCcc------------------hHHHHHHHHHHHHHHCCCH
Confidence 1111111111112222221 3333333333322211 1234667789999999999
Q ss_pred HHHHHHHHH
Q 003625 559 EKAFSLYAD 567 (807)
Q Consensus 559 ~~al~~~~~ 567 (807)
++|...|-+
T Consensus 135 ~~A~~~y~~ 143 (145)
T PF09976_consen 135 DEARAAYQK 143 (145)
T ss_pred HHHHHHHHH
Confidence 999998754
No 497
>PRK13684 Ycf48-like protein; Provisional
Probab=71.36 E-value=1.4e+02 Score=31.79 Aligned_cols=135 Identities=11% Similarity=0.046 Sum_probs=71.0
Q ss_pred ecCCEEEEEecCCeEEEE-ecCCCeeEEe-cCCCcceeEEEEcCCCCEEEEEeCCCcEEEEeccCCceeE-Eec----CC
Q 003625 62 VAERMIALGTHAGTVHIL-DFLGNQVKEF-PAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMK-FDY----HR 134 (807)
Q Consensus 62 ~~~~~la~gs~dg~I~i~-d~~~~~~~~~-~~h~~~V~~l~~s~~g~~l~s~~~Dg~v~iwd~~~~~~~~-~~~----~~ 134 (807)
+++.++++| ..|.+..- +-.+..-... ..-...++++.+.++++.++.| ..|.+++=+.+.+...+ ... ..
T Consensus 182 ~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~ 259 (334)
T PRK13684 182 PDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNG 259 (334)
T ss_pred CCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccc
Confidence 455455444 44555432 2222222122 2334578999999999876654 55766543344444322 111 12
Q ss_pred -ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEcccCCccceEeec---CCcCeEEEEEe--CCEEEEEeCCcEEEEE
Q 003625 135 -PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHS---GEGPVHVVKWR--TSLIAWANDAGVKVYD 206 (807)
Q Consensus 135 -~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~~~~~~~~~~~~~---~~~~V~~l~~~--~~~la~~~d~~v~iwd 206 (807)
.+.++++.|+ +..++ ++.+|.+..- .. .+..-..... -......+.|. +..++++..|.|-.|+
T Consensus 260 ~~l~~v~~~~~-----~~~~~-~G~~G~v~~S-~d-~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 260 YGYLDLAYRTP-----GEIWA-GGGNGTLLVS-KD-GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred cceeeEEEcCC-----CCEEE-EcCCCeEEEe-CC-CCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 5788999887 55555 4556766432 11 2333333321 12346666665 5667777777776654
No 498
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.27 E-value=51 Score=40.58 Aligned_cols=131 Identities=16% Similarity=0.301 Sum_probs=76.5
Q ss_pred ecCCeEEEEecC-CCeeEEecCCCcceeEEEE--------cCCCCEEEEEeCCCcEEEEeccC----Cce------eEEe
Q 003625 71 THAGTVHILDFL-GNQVKEFPAHTAAVNDLSF--------DVDGEYVGSCSDDGSVVINSLFT----DEK------MKFD 131 (807)
Q Consensus 71 s~dg~I~i~d~~-~~~~~~~~~h~~~V~~l~~--------s~~g~~l~s~~~Dg~v~iwd~~~----~~~------~~~~ 131 (807)
+.|..+.+|+.+ ++....+.+-+..|..+.. .|.=++++..+.--.|.++-+.- +.. .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 567889999994 4656666665555655542 33334444444444566665432 111 2233
Q ss_pred cCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEE------cccCCccce-----------------Eee-cCCcCeEE
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNS------KKWLGYRDQ-----------------VLH-SGEGPVHV 186 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~------~~~~~~~~~-----------------~~~-~~~~~V~~ 186 (807)
... .|+|++...+ |+.|.+|-.+ .+ |. ..|.+++.. .+. ++..+|..
T Consensus 176 ~dg~~V~~I~~t~n-----GRIF~~G~dg-~l--yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 176 VDGVSVNCITYTEN-----GRIFFAGRDG-NL--YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cCCceEEEEEeccC-----CcEEEeecCC-CE--EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 334 8899996666 7777766554 33 53 345543111 112 35678999
Q ss_pred EEEe-CC-EE-EEEeCCcEEEEEcCC
Q 003625 187 VKWR-TS-LI-AWANDAGVKVYDAAN 209 (807)
Q Consensus 187 l~~~-~~-~l-a~~~d~~v~iwd~~~ 209 (807)
+..+ .+ ++ +-+..++|.+||+..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 9888 32 33 333688999999986
No 499
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=70.78 E-value=12 Score=40.38 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=42.4
Q ss_pred cCCCCEEEEEeC---------CCcEEEEeccCCceeEEecCC-ceEEEEeCCCCCCcCCCEEEEecCCCeEEEEEc
Q 003625 102 DVDGEYVGSCSD---------DGSVVINSLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSK 167 (807)
Q Consensus 102 s~~g~~l~s~~~---------Dg~v~iwd~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~v~l~~~ 167 (807)
||||++++.... .+.+.++|+.++....+.... .+....|+|+ |+.++.... +.|.+.+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~-----g~~~~~v~~-~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPD-----GKYIAFVRD-NNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SS-----STEEEEEET-TEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecC-----CCeeEEEec-CceEEEEC
Confidence 578887766332 356889999998877665444 8899999999 788887764 57877753
No 500
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=70.35 E-value=1.7e+02 Score=31.91 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCE-EEEEeCCCcEEEEeccCCceeE-EecCCceEEEEeCCCCCCcCCCEEEEecC---CCeEEEEEcccC
Q 003625 96 VNDLSFDVDGEY-VGSCSDDGSVVINSLFTDEKMK-FDYHRPMKAISLDPDYTRKMSRRFVAGGL---AGHLYLNSKKWL 170 (807)
Q Consensus 96 V~~l~~s~~g~~-l~s~~~Dg~v~iwd~~~~~~~~-~~~~~~v~~v~~~p~~~~~~~~~l~~g~~---dg~v~l~~~~~~ 170 (807)
-..++.++.+.. .++...++.|.+.|..+..+.. .........++++|+ +..+.++.. ++.+.+.+..+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~-----~~~vYV~n~~~~~~~vsvid~~t- 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPD-----GKYVYVANAGNGNNTVSVIDAAT- 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCC-----CCEEEEEecccCCceEEEEeCCC-
Confidence 346678888885 4455556899999977755543 333336678999999 554444433 56777776653
Q ss_pred CccceEeecCCcCeEEEEEe--CCEEEEE--eCCcEEEEEcCCCceEEeeeCCCCCCCCCCCCCeeeee-CCCEEEEE-e
Q 003625 171 GYRDQVLHSGEGPVHVVKWR--TSLIAWA--NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-W 244 (807)
Q Consensus 171 ~~~~~~~~~~~~~V~~l~~~--~~~la~~--~d~~v~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~ 244 (807)
............+ ..++++ |..+..+ .++.+.+.|..+..... ............++.+.++ ++..+.+. .
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCCCceEEECCCCCEEEEEec
Confidence 2333334444455 778888 6655554 58899999976655443 2211112222234455553 55555555 2
Q ss_pred -C--CcEEEEEEeeCC
Q 003625 245 -G--TYIKIASIKTNQ 257 (807)
Q Consensus 245 -d--~~i~vw~~~~~~ 257 (807)
+ +.+...+..++.
T Consensus 227 ~~~~~~v~~id~~~~~ 242 (381)
T COG3391 227 GSGSNNVLKIDTATGN 242 (381)
T ss_pred cCCCceEEEEeCCCce
Confidence 2 366666665543
Done!