Query 003625
Match_columns 807
No_of_seqs 551 out of 3667
Neff 9.6
Searched_HMMs 29240
Date Tue Mar 26 17:53:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003625.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1675-1679//hhsearch_pdb/003625hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvg_A Clathrin heavy chain 1; 1.0 1 1 207.6 -14.4 357 409-794 41-412 (624)
2 1vyh_C Platelet-activating fac 1.0 1 1 200.4 33.5 226 59-335 115-370 (410)
3 1vyh_C Platelet-activating fac 1.0 1 1 193.6 29.0 190 56-257 152-371 (410)
4 3dm0_A Maltose-binding peripla 1.0 1 1 191.3 29.2 228 57-336 385-634 (694)
5 2ynn_A Coatomer subunit beta'; 1.0 1 1 190.3 32.0 204 37-257 5-219 (304)
6 3dm0_A Maltose-binding peripla 1.0 1 1 188.9 29.6 189 58-257 436-634 (694)
7 4e54_B DNA damage-binding prot 1.0 1 1 186.5 22.5 191 57-257 122-329 (435)
8 3frx_A Guanine nucleotide-bind 1.0 1 1 186.0 32.7 186 59-257 24-229 (319)
9 2ymu_A WD-40 repeat protein; u 1.0 1 1 185.3 25.6 194 41-253 12-250 (577)
10 4gqb_B Methylosome protein 50; 1.0 1 1 185.2 26.0 185 60-256 90-290 (344)
No 1
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=1.00 E-value=1 Score=207.64 Aligned_cols=357 Identities=16% Similarity=0.124 Sum_probs=277.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999935998145759999999997270109999867057531480317999999952599784344576889999
Q 003625 409 HEKALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRL 488 (807)
Q Consensus 409 ~~~Al~l~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~e~~i~~f~~~~~l~~L~~yl~~~~~~l 488 (807)
-++|.+.|+.-. ..+....+|+++++. ++-.+|+..+.+ .+++..|.+||.....++..+.|.+||.+.+..+
T Consensus 41 ldRa~eyA~~~n-~p~VWs~LgkAqL~~----~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ 113 (624)
T 3lvg_A 41 LDRAYEFAERCN-EPAVWSQLAKAQLQK----GMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 113 (624)
T ss_dssp STTTTTSSSSCC-CCCCSSSHHHHTTTS----SSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC
T ss_pred CHHHHHHHHHHC-CCCHHHHHHHHHHCC----CCHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 288999999809-800899999999756----926799999994--7885889999999986798899999999999874
Q ss_pred CHHHHH-HHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 778999-9999996499776889987312896787937899998776402988189999999999824998999999998
Q 003625 489 RDTAYE-VALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSMTDALKEALAELYVIDGHYEKAFSLYAD 567 (807)
Q Consensus 489 ~~~~~~-~~L~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~al~~~~~ 567 (807)
+....+ .++.+|.+.. ....+.+|+.. ++.-++..+.+.|=+.. +|+++.+||....+|.+...++++
T Consensus 114 ke~~IDteLi~ayAk~~-rL~elEefl~~--~N~A~iq~VGDrcf~e~--------lYeAAKilys~isN~akLAstLV~ 182 (624)
T 3lvg_A 114 RESYVETELIFALAKTN-RLAELEEFING--PNNAHIQQVGDRCYDEK--------MYDAAKLLYNNVSNFGRLASTLVH 182 (624)
T ss_dssp CSTTTTHHHHHHHHTSC-SSSTTTSTTSC--CSSSCTHHHHHHHHHSC--------CSTTSSTTGGGSCCCTTTSSSSSS
T ss_pred CCCCCHHHHHHHHHHHC-CHHHHHHHHCC--CCCCCHHHHHHHHHHCC--------CHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 54401899999998617-57899999759--98243888999998836--------889999999967638999999999
Q ss_pred CCCCC-HHHHHHHCC---CHHHHHHHHHHHHHCC--HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 06960-356763036---3599999999988059--46788875402787793799999860645576346899999998
Q 003625 568 LMKPY-IFDFIENHN---LHDAIREKVVQLMLLD--CKRAVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHAL 641 (807)
Q Consensus 568 ~~~~~-~~~~i~~~~---~~~~v~~~~~~l~~~~--~~~~~~ll~~~~~~~~~~~vi~~l~~~~~~~~~~~~l~~yL~~l 641 (807)
+++.. |.+..++.+ .|+.|..-|.+--+.. ...++.|++...+. +.+|..+++.+ .-..|+.-||.
T Consensus 183 L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL---~elv~~YE~~G----~f~ELIsLlEa- 254 (624)
T 3lvg_A 183 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL---EELINYYQDRG----YFEELITMLEA- 254 (624)
T ss_dssp CSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC---SGGGSSSSTTC----CCTTSTTTHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHCCCHHHH---HHHHHHHHHCC----CHHHHHHHHHH-
T ss_conf 98889999999864890279999999847318899998263202358889---99999999679----88999999997-
Q ss_pred HHHCCCCCHHH---HHHHHHHHHHHCHHHHHHHHHC-CCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH-
Q ss_conf 84199999357---9999999897116888998520-899998899999713796167999974128949999999998-
Q 003625 642 FEVNPHAGKDF---HDMQVELYADYDLKMLLPFLRS-SQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINK- 716 (807)
Q Consensus 642 ~~~~~~~~~~~---~~~l~~ly~~~~~~kl~~~L~~-~~~y~~~~~l~~~~~~~~~~e~~~l~~~~g~~~~Al~~~~~~- 716 (807)
.....+++ -|.|.-||++|.|+|++++|+. .+..+..++++.|++..+|.|.+|||.+..+++.|...+|.+
T Consensus 255 ---glglErAHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~ 331 (624)
T 3lvg_A 255 ---ALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 331 (624)
T ss_dssp ---HTTSTTCCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCH
T ss_pred ---HHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf ---74787306789999999998258899999999999750478999999997628999999961013789999998088
Q ss_pred --HCCHHHHHHHHHHCCCHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --1997899999840499058999999944-9906899999840599998879840999976000899999999635678
Q 003625 717 --LGDIEEAVEFVNMQHDDELWEELIKQCL-NKPEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIITDYRTE 793 (807)
Q Consensus 717 --l~d~~~a~~~~~~~~~~~lw~~ll~~~~-~~~~~~~~lL~~~~~~~~~~~vl~~lp~~~~i~~i~~~l~~~l~~~~~~ 793 (807)
.-|...-++.+.++.+.++++..+.+|+ .+|..+.+||......+|+.+|++.+.....|+.||+||..+...++..
T Consensus 332 ~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~a 411 (624)
T 3lvg_A 332 TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKS 411 (624)
T ss_dssp HHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHH
T ss_pred HHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 53205789999999710389999999999984848899999860213780999999996488366499999999863799
Q ss_pred H
Q ss_conf 9
Q 003625 794 T 794 (807)
Q Consensus 794 ~ 794 (807)
+
T Consensus 412 V 412 (624)
T 3lvg_A 412 V 412 (624)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=200.43 Aligned_cols=226 Identities=19% Similarity=0.311 Sum_probs=179.9
Q ss_pred EEEECCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE-EEECCC-C
Q ss_conf 99855979999956884999924-99815785278765448998489999999948996999806589556-774699-6
Q 003625 59 CVAVAERMIALGTHAGTVHILDF-LGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYHR-P 135 (807)
Q Consensus 59 ~~s~~~~~la~gs~dg~I~i~d~-~~~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~~-~ 135 (807)
+|+|++.++++|+.||.|++||. ++.....+.+|.+.|++++|+|+|.++++|+.||+|++||+.+..+. .+.+|. .
T Consensus 115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 194 (410)
T 1vyh_C 115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194 (410)
T ss_dssp EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 99699998999938985999989999377888166786878998599999999918981999958998266998289997
Q ss_pred EEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEE--CCEEEEE-ECCCEEEEECCCCCE
Q ss_conf 4899948987786887899952898099997024775333842498674999993--9899999-189499998389916
Q 003625 136 MKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQR 212 (807)
Q Consensus 136 v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~--~~~la~~-~d~~i~iwd~~~~~~ 212 (807)
|.+++|+|+ +..+++|+.||.|++|+.. .+.....+.+|...|.++.|+ +.+++++ .|+.|++||+.++.+
T Consensus 195 V~~v~~~p~-----~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 195 VSSVSIMPN-----GDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp EEEEEECSS-----SSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEEECC-----CCEEEEEECCCEEEEEECC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCE
T ss_conf 789999679-----9999999689969999899-9948999927886289999989999999991899099998989743
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEC---------------------CCEEEEE-ECCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 886509999999988888034317---------------------9779999-389199999940897677885345786
Q 003625 213 ITFIERPRGSPRPELLLPHLVWQD---------------------DTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGM 270 (807)
Q Consensus 213 ~~~i~~~~~~~~~~~~~~~l~~~~---------------------~~~l~~g-~d~~I~iw~~~~~~~~~~~~~~~~~~~ 270 (807)
...+..+. ..+.++.|+. +..+++| .|+.|++|+++++.
T Consensus 269 ~~~~~~h~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~------------- 329 (410)
T 1vyh_C 269 KAELREHR------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM------------- 329 (410)
T ss_dssp EEEECCCS------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-------------
T ss_pred EEEECCCC------CEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC-------------
T ss_conf 66733787------45899998586554310121255555667888899999389849999889996-------------
Q ss_pred CEEEEEEEEE-ECEEEEEEEECC-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 1489999755-061899411308-9359999536998873333579876568899990899505886
Q 003625 271 NQVDIVASFQ-TSYYISGIAPFG-DCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNND 335 (807)
Q Consensus 271 ~~~~~~~~~~-~~~~i~gis~~~-~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~ 335 (807)
+...+. -+..|.++++.. ..+++.+.. ...+++.+..+.
T Consensus 330 ----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----------------------D~~i~vwd~~~~ 370 (410)
T 1vyh_C 330 ----CLMTLVGHDNWVRGVLFHSGGKFILSCAD----------------------DKTLRVWDYKNK 370 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECSSSSCEEEEET----------------------TTEEEEECCTTS
T ss_pred ----EEEEEECCCCCEEEEEECCCCCEEEEEEC----------------------CCEEEEEECCCC
T ss_conf ----69999778885899999499899999959----------------------792999989999
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=193.60 Aligned_cols=190 Identities=12% Similarity=0.171 Sum_probs=147.2
Q ss_pred CEEE--EEECCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE-EEE
Q ss_conf 3499--98559799999568849999249-9815785278765448998489999999948996999806589556-774
Q 003625 56 AASC--VAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFD 131 (807)
Q Consensus 56 ~i~~--~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~~-~~~ 131 (807)
.+.+ |+++++++++|+.||+|++||.. +..+..+.+|...|++++|+|++.++++|+.|+.|++||+.++.+. .+.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEE
T ss_conf 68789985999999999189819999589982669982899977899996799999999689969999899994899992
Q ss_pred CCC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEEC-------------------
Q ss_conf 699-648999489877868878999528980999970247753338424986749999939-------------------
Q 003625 132 YHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT------------------- 191 (807)
Q Consensus 132 ~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~~------------------- 191 (807)
+|. .|.+++++|+ +..+++|+.||.|++|+.. .+.....+.+|...|.++.|++
T Consensus 232 ~h~~~v~~~~~~~~-----g~~l~s~s~D~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 232 GHREWVRMVRPNQD-----GTLIASCSNDQTVRVWVVA-TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp CCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred CCCCCEEEEEECCC-----CCEEEEECCCCEEEEEECC-CCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCC
T ss_conf 78862899999899-----9999999189909999898-97436673378745899998586554310121255555667
Q ss_pred ---CEEEEE-ECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE-CCCEEEEE-ECCCEEEEEEEECC
Q ss_conf ---899999-18949999838991688650999999998888803431-79779999-38919999994089
Q 003625 192 ---SLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 192 ---~~la~~-~d~~i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~I~iw~~~~~~ 257 (807)
.+++++ .|+.|++||++++.++..+..+. ..+.+++|+ ++..+++| .|+.|++|++..+.
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCS------SCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEECCC------CCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 888899999389849999889996699997788------858999994998999999597929999899990
No 4
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=191.29 Aligned_cols=228 Identities=15% Similarity=0.187 Sum_probs=171.1
Q ss_pred EEE--EEEC-CCEEEEEECCCEEEEEECCC------CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 499--9855-97999995688499992499------81578527876544899848999999994899699980658955
Q 003625 57 ASC--VAVA-ERMIALGTHAGTVHILDFLG------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEK 127 (807)
Q Consensus 57 i~~--~s~~-~~~la~gs~dg~I~i~d~~~------~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~ 127 (807)
|.| ++++ ++++++|+.||+|++|+... .....+.+|...|++++|+|+|+++++|+.||.|++||+.++..
T Consensus 385 V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 69998669988889998089948999756887555533324258888479999979999999980899289997999951
Q ss_pred E-EEECCC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEE----ECCCCCEEEEEEEC----CEEEEE
Q ss_conf 6-774699-6489994898778688789995289809999702477533384----24986749999939----899999
Q 003625 128 M-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL----HSGEGPVHVVKWRT----SLIAWA 197 (807)
Q Consensus 128 ~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~----~~~~~~V~~i~~~~----~~la~~ 197 (807)
. .+.+|. .|.+++|+|+ ++.+++|+.||.|++|+.. +.....+ .+|...|.+++|++ ..++++
T Consensus 465 ~~~~~~h~~~v~~~~~s~~-----~~~l~s~s~D~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 465 TRRFVGHTKDVLSVAFSLD-----NRQIVSASRDRTIKLWNTL--GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp EEEEECCSSCEEEEEECTT-----SSCEEEEETTSCEEEECTT--SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred EEEEECCCCCEEEEEEECC-----CCEEEEEECCCEEEEEECC--CCCCEEECCCCCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 3688679998899999089-----9989999488979999789--98540430377888786799999179886559999
Q ss_pred -ECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE-CCCEEEEE-ECCCEEEEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf -18949999838991688650999999998888803431-79779999-3891999999408976778853457861489
Q 003625 198 -NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQSNVANGTYRHVGMNQVD 274 (807)
Q Consensus 198 -~d~~i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~I~iw~~~~~~~~~~~~~~~~~~~~~~~ 274 (807)
.|+.|++||+++.+....+..|. ..+.+++|+ ++..+++| .|+.|++|++.++..
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h~------~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~---------------- 595 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGHT------GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK---------------- 595 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS------SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE----------------
T ss_pred ECCCEEEEEECCCCCEEEEECCCC------CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCE----------------
T ss_conf 689859999899992789986788------8888999918989899995899499998899956----------------
Q ss_pred EEEEEEECEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 99975506189941130893599995369988733335798765688999908995058862
Q 003625 275 IVASFQTSYYISGIAPFGDCLVVLAYIPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDE 336 (807)
Q Consensus 275 ~~~~~~~~~~i~gis~~~~~l~vl~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~iv~~~~~~ 336 (807)
...+..+..+..+++..+...+.+.. ...+++++..+..
T Consensus 596 -~~~~~~~~~v~~~~~sp~~~~l~~~~----------------------~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 596 -LYSLEANSVIHALCFSPNRYWLCAAT----------------------EHGIKIWDLESKS 634 (694)
T ss_dssp -EECCBCSSCEEEEEECSSSSEEEEEE----------------------TTEEEEEETTTTE
T ss_pred -EEEECCCCCEEEEEECCCCCEEEEEC----------------------CCCEEEEECCCCC
T ss_conf -78833899478999859986899976----------------------9978999899998
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=1.00 E-value=1 Score=190.34 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=164.5
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 8501463289874125898349998559799999568849999249-981578527876544899848999999994899
Q 003625 37 PRLKYQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDG 115 (807)
Q Consensus 37 ~~l~~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg 115 (807)
....+..+.+.+..+ +|+|+++++++|+.||.|++||.. +..+..+..|..+|.+++|+|+++++++|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~-------~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGI-------DFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CEEEEEEECSCEEEE-------EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred EEEEECCCCCCEEEE-------EECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC
T ss_conf 677010788856899-------9899998799982799699987888826677605677488999968999899988999
Q ss_pred CEEEEECCCCCEE-EEECCC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEE---
Q ss_conf 6999806589556-774699-64899948987786887899952898099997024775333842498674999993---
Q 003625 116 SVVINSLFTDEKM-KFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--- 190 (807)
Q Consensus 116 ~v~iwd~~~~~~~-~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~--- 190 (807)
.|++||+.++... .+.+|. .|.+++|+|+ +..+++|+.||.|++|+..........+.+|...|.+++|+
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSS-----SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCC-----CCEEEEECCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCC
T ss_conf 7999999999678998079980899999599-----99999987998199998999922310105668957999988899
Q ss_pred CCEEEEE-ECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE---CCCEEEEE-ECCCEEEEEEEECC
Q ss_conf 9899999-18949999838991688650999999998888803431---79779999-38919999994089
Q 003625 191 TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ---DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 191 ~~~la~~-~d~~i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~---~~~~l~~g-~d~~I~iw~~~~~~ 257 (807)
+.+++++ .|+.|++||++.......+.... ...+..+.|. ++..+++| .|++|++|+++++.
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-----ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEEECCC-----TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred CCEEEEEECCCEEEEEECCCCCCCCEECCCC-----CCCEEEEEEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 9989999189839999899997663321687-----475778999986999999998699919999678986
No 6
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=188.92 Aligned_cols=189 Identities=19% Similarity=0.252 Sum_probs=156.3
Q ss_pred EEEEECCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE----EC
Q ss_conf 9998559799999568849999249-981578527876544899848999999994899699980658955677----46
Q 003625 58 SCVAVAERMIALGTHAGTVHILDFL-GNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKMKF----DY 132 (807)
Q Consensus 58 ~~~s~~~~~la~gs~dg~I~i~d~~-~~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~~~~----~~ 132 (807)
.+|+++++++++|+.||.|++||.. +.....+.+|...|++++|+|+++++++|+.|++|++||........+ ..
T Consensus 436 v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 515 (694)
T 3dm0_A 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEECCCCCC
T ss_conf 99979999999980899289997999951368867999889999908999899994889799997899854043037788
Q ss_pred CC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEE--CCEEEEE-ECCCEEEEECC
Q ss_conf 99-64899948987786887899952898099997024775333842498674999993--9899999-18949999838
Q 003625 133 HR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAA 208 (807)
Q Consensus 133 ~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~--~~~la~~-~d~~i~iwd~~ 208 (807)
|. .|.+++|+|+. ....+++|+.||.|++|+.. .+.....+.+|.+.|++++|+ +.+++++ .|+.|++||++
T Consensus 516 h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~-~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 516 HRDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLS-NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp CSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CCCCEEEEEEECCC---CCCEEEEEECCCEEEEEECC-CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 87867999991798---86559999689859999899-992789986788888899991898989999589949999889
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEE-CCCEEEEEECCCEEEEEEEECC
Q ss_conf 991688650999999998888803431-7977999938919999994089
Q 003625 209 NDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIGWGTYIKIASIKTNQ 257 (807)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g~d~~I~iw~~~~~~ 257 (807)
+++.+..+..+ ..+.+++|+ ++..++++.++.|++|++.++.
T Consensus 592 ~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 592 EGKKLYSLEAN-------SVIHALCFSPNRYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp TTEEEECCBCS-------SCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred CCCEEEEECCC-------CCEEEEEECCCCCEEEEECCCCEEEEECCCCC
T ss_conf 99567883389-------94789998599868999769978999899998
No 7
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=186.51 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=152.1
Q ss_pred EEE--EEE-CCCEEEEEECCCEEEEEECCC-CE--EEEECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 499--985-597999995688499992499-81--578527876544899848-99999999489969998065895567
Q 003625 57 ASC--VAV-AERMIALGTHAGTVHILDFLG-NQ--VKEFPAHTAAVNDLSFDV-DGEYVGSCSDDGSVVINSLFTDEKMK 129 (807)
Q Consensus 57 i~~--~s~-~~~~la~gs~dg~I~i~d~~~-~~--~~~~~~h~~~V~~i~~s~-~g~~l~s~s~Dg~v~iwd~~~~~~~~ 129 (807)
|+| |+| ++++||+|+.||.|++||... .. ...+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++....
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 99999918999999999188979999798997136897368999888999907999999999589979996456772258
Q ss_pred EECC---C-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEE---CCEEEEE-ECCC
Q ss_conf 7469---9-64899948987786887899952898099997024775333842498674999993---9899999-1894
Q 003625 130 FDYH---R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWR---TSLIAWA-NDAG 201 (807)
Q Consensus 130 ~~~~---~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~---~~~la~~-~d~~ 201 (807)
+..+ . .+.+++|+|+ +..+++|+.||.|++|+.. +.....+.+|.++|++++|+ +.+++++ .|+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~-----~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 202 FASSDTINIWFCSLDVSAS-----SRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp EECCSSCSCCCCCEEEETT-----TTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred EECCCCCCCCEEEEEECCC-----CCEEEEEECCCCEEEECCC--CCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCE
T ss_conf 8616777753799998999-----9999999589967663267--50568984134337753333777449998337640
Q ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE-CCCEEEEE-ECCCEEEEEEEECC
Q ss_conf 9999838991688650999999998888803431-79779999-38919999994089
Q 003625 202 VKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 202 i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~I~iw~~~~~~ 257 (807)
|++||+++......+.. ...|...+.+++|+ ++..|++| .|+.|++|++..+.
T Consensus 275 v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLY---SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp CCEEETTTCCSSSCCSB---CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred EEEEECCCCCCCCEEEE---EEECCCCCCCEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 25886344666524787---42024654213389999824877599979999899996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=1.00 E-value=1 Score=186.05 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=156.8
Q ss_pred EEEEC-CCEEEEEECCCEEEEEECCC------CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE-EE
Q ss_conf 99855-97999995688499992499------815785278765448998489999999948996999806589556-77
Q 003625 59 CVAVA-ERMIALGTHAGTVHILDFLG------NQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KF 130 (807)
Q Consensus 59 ~~s~~-~~~la~gs~dg~I~i~d~~~------~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~~-~~ 130 (807)
+++++ ++++++|+.||+|++|+..+ ..+..+.+|...|++++|+|+|.++++|+.|++|++||+.++... .+
T Consensus 24 ~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 24 ATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF 103 (319)
T ss_dssp EECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE
T ss_conf 80699964899826886299953778875235232697078002789998799999999938998999989989704897
Q ss_pred ECCC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEEC--------CEEEEE-ECC
Q ss_conf 4699-648999489877868878999528980999970247753338424986749999939--------899999-189
Q 003625 131 DYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSGEGPVHVVKWRT--------SLIAWA-NDA 200 (807)
Q Consensus 131 ~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~V~~i~~~~--------~~la~~-~d~ 200 (807)
.+|. +|.+++|+|+ +..+++|+.||.+++|+.. +.....+.+|.+.|.++.|.+ ..++++ .|+
T Consensus 104 ~~h~~~v~~~~~~~~-----~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~ 176 (319)
T 3frx_A 104 VGHKSDVMSVDIDKK-----ASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176 (319)
T ss_dssp ECCSSCEEEEEECTT-----SCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTS
T ss_pred CCCCCCEEEEEECCC-----CCEEEEEECCCEEEEEECC--CCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCC
T ss_conf 367996899999699-----9999999489929999779--980899842678589789826888888855999990899
Q ss_pred CEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE-CCCEEEEE-ECCCEEEEEEEECC
Q ss_conf 49999838991688650999999998888803431-79779999-38919999994089
Q 003625 201 GVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-DDTLLVIG-WGTYIKIASIKTNQ 257 (807)
Q Consensus 201 ~i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~~~l~~g-~d~~I~iw~~~~~~ 257 (807)
.|++||+++.+....+..+. ..+.+++|+ ++..+++| .|+.|++|++..+.
T Consensus 177 ~i~~wd~~~~~~~~~~~~h~------~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 177 MVKAWNLNQFQIEADFIGHN------SNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp CEEEEETTTTEEEEEECCCC------SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEEEECCCCHHHEEECCCC------CCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 79998898642010244777------857999996999999998589969999999995
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=185.31 Aligned_cols=194 Identities=17% Similarity=0.205 Sum_probs=143.1
Q ss_pred EEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 46328987412589834999855979999956884999924998157852787654489984899999999489969998
Q 003625 41 YQRMGGSLPSLLANDAASCVAVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN 120 (807)
Q Consensus 41 ~~~~~~~~~~~~~~~~i~~~s~~~~~la~gs~dg~I~i~d~~~~~~~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iw 120 (807)
+.+|++.+..+ +|+|+|++||+|+.||.|++||.++..+.++.+|.+.|++++|+|+|++|++++.|+.|++|
T Consensus 12 L~GH~~~V~~~-------a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 12 LEAHSSSVRGV-------AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp ECCCSSCEEEE-------EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ECCCCCCEEEE-------EECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 87899857999-------99899899999938998999979997899996898998999998999999999698979999
Q ss_pred ECCCCCEEEEECCC-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCC----------------------------
Q ss_conf 06589556774699-6489994898778688789995289809999702477----------------------------
Q 003625 121 SLFTDEKMKFDYHR-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLG---------------------------- 171 (807)
Q Consensus 121 d~~~~~~~~~~~~~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~---------------------------- 171 (807)
|..+..+..+.+|. +|.+++|+|+ ++.+++++.|+.+++|+.....
T Consensus 85 d~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 159 (577)
T 2ymu_A 85 NRNGQLLQTLTGHSSSVRGVAFSPD-----GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred ECCCCEEEEEECCCCCEEEEEECCC-----CCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECCC
T ss_conf 8999789999789998899999899-----99899980798335202355200110477774355542037763200255
Q ss_pred -----------CCCEEEECCCCCEEEEEEE--CCEEEEE-ECCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEE-C
Q ss_conf -----------5333842498674999993--9899999-18949999838991688650999999998888803431-7
Q 003625 172 -----------YRDQVLHSGEGPVHVVKWR--TSLIAWA-NDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQ-D 236 (807)
Q Consensus 172 -----------~~~~~~~~~~~~V~~i~~~--~~~la~~-~d~~i~iwd~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~ 236 (807)
........+.+.|.++.++ +.+++++ .|+.|++|+.. ++....+..+. ..+.+++|+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~------~~v~~~~~s~d 232 (577)
T 2ymu_A 160 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS------SSVRGVAFSPD 232 (577)
T ss_dssp TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCS------SCEEEEEECTT
T ss_pred CCCEECCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEEECCC------CCEEEEEECCC
T ss_conf 531000000000000026877635665416997789998599989999499-96899994688------98899999799
Q ss_pred CCEEEEE-ECCCEEEEEE
Q ss_conf 9779999-3891999999
Q 003625 237 DTLLVIG-WGTYIKIASI 253 (807)
Q Consensus 237 ~~~l~~g-~d~~I~iw~~ 253 (807)
+..++++ .++.|++|+.
T Consensus 233 g~~l~~~~~d~~i~~w~~ 250 (577)
T 2ymu_A 233 GQTIASASDDKTVKLWNR 250 (577)
T ss_dssp SSCEEEEETTSCEEEECT
T ss_pred CCEEEEEECCCEEEEEEC
T ss_conf 999999918998999959
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=185.17 Aligned_cols=185 Identities=12% Similarity=0.137 Sum_probs=107.6
Q ss_pred EEECCCEEEEEECCCEEEEEECC-CCEE----EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE-EEECC
Q ss_conf 98559799999568849999249-9815----785278765448998489999999948996999806589556-77469
Q 003625 60 VAVAERMIALGTHAGTVHILDFL-GNQV----KEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVINSLFTDEKM-KFDYH 133 (807)
Q Consensus 60 ~s~~~~~la~gs~dg~I~i~d~~-~~~~----~~~~~h~~~V~~i~~s~~g~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~ 133 (807)
|+++ +.+++|+.||+|++||.. +... ....+|.+.|++++|+|+|++|++|+.||+|++||+.++.+. .+.+|
T Consensus 90 ~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 168 (344)
T 4gqb_B 90 WVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168 (344)
T ss_dssp EETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EECC-CEEEEEECCCEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 9299-829999897989999653887435860134678997899999899899999949893999999999699997576
Q ss_pred C-CEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEE--ECCCCCEEEEEEE---CCEEEEE-ECCCEEEEE
Q ss_conf 9-6489994898778688789995289809999702477533384--2498674999993---9899999-189499998
Q 003625 134 R-PMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVL--HSGEGPVHVVKWR---TSLIAWA-NDAGVKVYD 206 (807)
Q Consensus 134 ~-~v~~v~~~p~~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~~~~--~~~~~~V~~i~~~---~~~la~~-~d~~i~iwd 206 (807)
. .|.+++|+|+ +...+++|+.||.|++|+.. .+.....+ ..+...+.++.|+ +.+++++ .|+.|++||
T Consensus 169 ~~~V~~~~~~~~----~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 169 AAQVTCVAASPH----KDSVFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SSCEEEEEECSS----CTTEEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCC----CCCCEEEECCCCCCCCCCCC-CCCEEEEEECCEEECCCEEEEECCCCCCCEEEECCCCCEEEEE
T ss_conf 885578886589----99740110344355102344-5520011101000012123566179996058861587189898
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEEE-CC-CEEEEE-ECCCEEEEEEEEC
Q ss_conf 38991688650999999998888803431-79-779999-3891999999408
Q 003625 207 AANDQRITFIERPRGSPRPELLLPHLVWQ-DD-TLLVIG-WGTYIKIASIKTN 256 (807)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~~-~~-~~l~~g-~d~~I~iw~~~~~ 256 (807)
+++++++..+..+. ..+.+++|+ ++ .++++| .|++|++||+.++
T Consensus 244 ~~~~~~~~~~~~h~------~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 244 TKSTSCVLSSAVHS------QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp SCC--CCEEEECCS------SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred CCCCCEEEEECCCC------CCEEEEEECCCCCEEEEEEECCCEEEEEECCCC
T ss_conf 99995989983788------998899992699909999938994999999999
Done!