Query 003627
Match_columns 807
No_of_seqs 157 out of 182
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 18:25:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003627.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1675-1679//hhsearch_pdb/003627hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swh_A MUNC13-1, protein UNC-1 1.0 1 1 374.5 20.4 301 403-750 6-337 (341)
2 2fji_1 Exocyst complex compone 1.0 1 1 84.9 20.2 332 405-792 6-355 (399)
3 2a2f_X Exocyst complex compone 1.0 1 1 40.5 14.4 248 440-738 68-317 (325)
4 3hr0_A COG4; conserved oligome 1.0 1 1 30.5 10.4 218 551-793 21-255 (263)
5 2ob9_A Tail assembly chaperone 1.0 1 1 15.3 3.8 39 663-702 61-99 (130)
6 1nrj_A Signal recognition part 1.0 1 1 15.2 2.1 25 128-152 98-122 (158)
7 4dmb_A HD domain-containing pr 1.0 1 1 15.0 3.9 77 346-427 118-195 (204)
8 3fx7_A Putative uncharacterize 1.0 1 1 14.9 3.1 24 591-614 49-72 (94)
9 1orj_A Flagellar protein FLIS; 1.0 1 1 14.8 2.9 38 110-147 84-121 (130)
10 2dky_A RHO-GTPase-activating p 1.0 1 1 14.0 -2.3 23 97-119 25-49 (91)
No 1
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=374.47 Aligned_cols=301 Identities=17% Similarity=0.286 Sum_probs=238.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC---CCHHH
Q ss_conf 14567699999999999978999998543046442179---9988877599999989999999966999862---02048
Q 003627 403 EAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARA---NKESIAPSAVEVLRTIDETMEAFFMLPIPMH---SVLLP 476 (807)
Q Consensus 403 ~ie~~~~~~v~~Wi~e~~~k~~ewv~rai~~E~W~P~s---~~e~~S~SVVDiFrii~etid~ff~L~~p~~---~~~l~ 476 (807)
+++.||.|+|++|+++..+++.+||++|++.|+|+|.. ++.+||+||||+|++++|+++.+.+|+||++ ..+++
T Consensus 6 ~~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t 85 (341)
T 3swh_A 6 EYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMR 85 (341)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 73788999999999998999999999998621358755355676565559999999999999999779998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 89977999999999999811388878899996321132587411233101221000136777778888888865312211
Q 003627 477 ELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRI 556 (807)
Q Consensus 477 ~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrL 556 (807)
.|++.|.+++..||+.+.. +|..+..+. +...+||.+
T Consensus 86 ~l~~~i~~~~~~Y~~~l~~----------------------~~~~~~~~e---------------------~~~~~Cv~l 122 (341)
T 3swh_A 86 RFAKTISNVLLQYADIVSK----------------------DFASYCSKE---------------------KEKVPCILM 122 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------HHHHHCCTT---------------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH---------------------CCCCHHHHC
T ss_conf 9999999999999999999----------------------987652332---------------------124645641
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------CCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHEEECCHHHH
Q ss_conf 21999999999999998613013777877--------77420145432555-9999999999999840133111321465
Q 003627 557 NTFQHIRKELEVLEKKTVHQLRSSHSTRT--------DNITNGIEKRFELS-AASSVEAIQQLSEAIAYKVIFHDLSHVL 627 (807)
Q Consensus 557 NnL~yi~~qL~~Lek~i~~~~~~~~s~~~--------~~~~d~l~~~F~~s-~~~~~~ai~~l~e~ia~rvVF~Dl~~~l 627 (807)
||++|+|.+|+++.+.++..-.+.+.+.. +.+.+++...|... +..|..+++||+..+. ++.+- ..+
T Consensus 123 NNie~lR~~L~~l~~~l~~~~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~-~i~~~---~~~ 198 (341)
T 3swh_A 123 NNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILS-QVKGT---GNV 198 (341)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TCC--------
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC---CCC
T ss_conf 61999999999988861643578999999999999999999999999999988889999999999997-61055---667
Q ss_pred HHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HCCCCCCCCC
Q ss_conf 631--04687775450655998897899999552576677999999999999999999------------2699999889
Q 003627 628 WDG--LYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVL------------LAGGPSRAFT 693 (807)
Q Consensus 628 ~~~--LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~l~kA~~~~~l~VL------------L~GGpsR~Fs 693 (807)
-.+ .-.....+++|+|+|+|||++|.+++++|++++++|+++++|++++++|+.++ ++||+.|.|+
T Consensus 199 ~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~ 278 (341)
T 3swh_A 199 PASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLT 278 (341)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 84323543346788999999999999999999987888999999999999999999973662245667664045567999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--HHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 20537999999999975200999985888988--5886864102333585899999999
Q 003627 694 HQDSDIIEEDFKFLCDLFWSNGDGLPADLIDK--FSTSVRSILPLYHNDTESLIEEFKR 750 (807)
Q Consensus 694 ~~D~~iiEeDl~~Lk~~F~A~GeGLp~~~vek--~~~~v~~vL~L~~~~Td~LIe~f~~ 750 (807)
++++++++++|+.|++||||+|+|||.+++|+ +++.++++|+||+++|++||+.|..
T Consensus 279 ~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~ 337 (341)
T 3swh_A 279 PKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQ 337 (341)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999998645999999788704766999999998864998999999985
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=84.88 Aligned_cols=332 Identities=14% Similarity=0.164 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC-----CCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-CCCCH
Q ss_conf 567699999999999978999998543046--442-----179--99888775999999899999999669998-62020
Q 003627 405 EAAIGNLAKSWINIRVDRLKEWVCRNLQQE--VWN-----ARA--NKESIAPSAVEVLRTIDETMEAFFMLPIP-MHSVL 474 (807)
Q Consensus 405 e~~~~~~v~~Wi~e~~~k~~ewv~rai~~E--~W~-----P~s--~~e~~S~SVVDiFrii~etid~ff~L~~p-~~~~~ 474 (807)
++....++..|++....++.+|++|++++| .|. |.. +...+++.++|||+|++|.++.-....-. .-..+
T Consensus 6 ~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v 85 (399)
T 2fji_1 6 DKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGV 85 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 54599999999999999999999999999999988468999869998852886479999999999999847973009999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 48899779999999999998113888788999963211325874112331012210001367777788888888653122
Q 003627 475 LPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCC 554 (807)
Q Consensus 475 l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCV 554 (807)
+......+..-...|...+.+.+ +.+ .. .|++ .++.. .+.+ ++. . ...-++..+|.
T Consensus 86 ~~~~~~~L~~f~~~~~~~l~~~~---~~~------~~-~~~~----~~~~~-~~~~-~~~-~-------~~~~~~e~liA 141 (399)
T 2fji_1 86 VERFSDLLTKRQKNWISKISEEI---KKQ------IN-YNHK----YDIDP-ESIT-PED-E-------CPGGLVEYLIA 141 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHH------HH-HHHT----TTTGG-GSCC-TTT-C-------CCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH------HC-CCCC----CCCCC-CCCC-CCC-C-------CCCCHHHHHHH
T ss_conf 99999999999999999999999---987------52-0100----01242-2247-654-5-------65418786566
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHEEECCHHHHHHH
Q ss_conf 11219999999999999986130137778777742014543255599----99999999999840133111321465631
Q 003627 555 RINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAA----SSVEAIQQLSEAIAYKVIFHDLSHVLWDG 630 (807)
Q Consensus 555 rLNnL~yi~~qL~~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s~~----~~~~ai~~l~e~ia~rvVF~Dl~~~l~~~ 630 (807)
-+||-......++.|.+.+...+... ..+.+...|+.... -.+.|++++++. ||.|++..| ..
T Consensus 142 ~~Nn~~~~~e~~~~l~~~~~~~~~~~-------~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~-----if~dl~p~~-~~ 208 (399)
T 2fji_1 142 VSNDQMKAADYAVAISSKYGKLVSKV-------YEKQITNHLEGTLDGFAEVAQCSSLGLITL-----MFDDLRKPY-QE 208 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-----HHHTTHHHH-TT
T ss_pred HHCCHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-HH
T ss_conf 55448889999999999999862677-------888889999999999999999999999999-----999889999-98
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 04687-77545065599889789999955257667799999999999999999926999998892053799999999997
Q 003627 631 LYVGE-VSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCD 709 (807)
Q Consensus 631 LY~g~-V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~iiEeDl~~Lk~ 709 (807)
++... ..+.-++.+...++..+.-+...+++.....++.++...++-.++..++.+..-|.....-..-|..|.+.|++
T Consensus 209 lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~ 288 (399)
T 2fji_1 209 IFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQ 288 (399)
T ss_dssp TTSGGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 57703008767999999999999999998086999999999999999999999846777784059999999999999999
Q ss_pred HCCCCCCCCC--HHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 5200999985--8889885886864102333585-899999999877640799887788999899989999764111002
Q 003627 710 LFWSNGDGLP--ADLIDKFSTSVRSILPLYHNDT-ESLIEEFKRLTLESYGSSAKSRLPLPPTSGQWNPTEPNTVLRVLC 786 (807)
Q Consensus 710 ~F~A~GeGLp--~~~vek~~~~v~~vL~L~~~~T-d~LIe~f~~~~~~~~g~~~~~~lp~p~t~~~w~~~d~ntiLRVLc 786 (807)
||-.-+.+-. ...++.....+..+.. ...++ +.+.+.+..... .+ |+ -.++.+-.||.
T Consensus 289 ~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~-~y----------------pD-~~~~~V~aiL~ 349 (399)
T 2fji_1 289 LFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLE-VY----------------WD-SRIDLLVGILK 349 (399)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHT-TC----------------TT-CCSHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHH-HC----------------CC-CCHHHHHHHHH
T ss_conf 9998556532025778779999999997-368957779999999998-68----------------99-99999999998
Q ss_pred CCCCHH
Q ss_conf 569814
Q 003627 787 YRSDET 792 (807)
Q Consensus 787 hR~D~~ 792 (807)
-|.|-.
T Consensus 350 ~R~D~~ 355 (399)
T 2fji_1 350 CRKDVS 355 (399)
T ss_dssp TCTTCC
T ss_pred HCCCCC
T ss_conf 254899
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=40.51 Aligned_cols=248 Identities=15% Similarity=0.099 Sum_probs=144.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99988877599999989999999966999862020488997799999999999981138887889999632113258741
Q 003627 440 ANKESIAPSAVEVLRTIDETMEAFFMLPIPMHSVLLPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKF 519 (807)
Q Consensus 440 s~~e~~S~SVVDiFrii~etid~ff~L~~p~~~~~l~~L~~gi~~~lq~Y~~~v~~~~g~ke~~iP~~P~LTR~~~~~~f 519 (807)
...-|||+.|.++.+.++..++.++..--.. ..-..-++..+.+|.+.+.... - .
T Consensus 68 P~~lPFS~~vP~~c~~ir~fi~~~~~F~~~~-----~~~~~eidd~lrks~d~LL~~~----------------v--~-- 122 (325)
T 2a2f_X 68 PKKFPFSRMVPEVYHQAKEFMYACMKFAEEL-----TLSPNEVAAMVRKAANLLLTRS----------------F--S-- 122 (325)
T ss_dssp CCCSSSBTHHHHHHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHHH----------------H--H--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHH----------------H--H--
T ss_conf 8125760788999999999999999998733-----6672138899999999999999----------------9--9--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 12331012210001367777788888888653122112199999999999999861301377787777420145432555
Q 003627 520 GAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELS 599 (807)
Q Consensus 520 ~~~Kkk~~p~~~~~~~~~~~~~~~~~s~~~~~lCVrLNnL~yi~~qL~~Lek~i~~~~~~~~s~~~~~~~d~l~~~F~~s 599 (807)
...++++. +.+.+..++.=.+=|++|...-...+++-+... +.++++. .......|..+
T Consensus 123 ~~L~~~i~----------------~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~~~-~~~~~~~----~l~a~~~f~~~ 181 (325)
T 2a2f_X 123 GCLSVVFR----------------QPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHM-TNTERSV----SQTPSAMFHVA 181 (325)
T ss_dssp HHHHHHHT----------------CTTSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HTCCC-----------CCSCCC
T ss_pred HHHHHHHH----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCC----CHHHHHHHHHH
T ss_conf 99999985----------------447869999999997999999999999999998-2887533----11178999999
Q ss_pred HHHHHHHHHHHHHHHHHHHE-EECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998401331-11321465631046877754506559988978999995525766779999999999999
Q 003627 600 AASSVEAIQQLSEAIAYKVI-FHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEG 678 (807)
Q Consensus 600 ~~~~~~ai~~l~e~ia~rvV-F~Dl~~~l~~~LY~g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~l~kA~~~~ 678 (807)
+.++.+.| .+.+..|+- |.++-+.=|..--..+-++.=|..+..||+...+. -..+...++..+..+.|+..=+.
T Consensus 182 r~~Ae~~I---~~~v~~KIDdfl~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~ 257 (325)
T 2a2f_X 182 RQDAEKQV---GLRICSKIDEFFELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEK 257 (325)
T ss_dssp TTHHHHHH---HHHHHHHHHHHHTTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999---999998999998760368878889998568999999999999999-87399999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999926999998892053799999999997520099-99858889885886864102333
Q 003627 679 FLLVLLAGGPSRAFTHQDSDIIEEDFKFLCDLFWSNG-DGLPADLIDKFSTSVRSILPLYH 738 (807)
Q Consensus 679 ~l~VLL~GGpsR~Fs~~D~~iiEeDl~~Lk~~F~A~G-eGLp~~~vek~~~~v~~vL~L~~ 738 (807)
++-.|++ ..-|.++..-+.-++-|++.+.+|=-+++ .|+....+...-..+|+.++|+-
T Consensus 258 l~~~Ll~-~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~ 317 (325)
T 2a2f_X 258 IYSIMYD-EDVKQISTGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLI 317 (325)
T ss_dssp HHHHHTC-------CCTTHHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHH
T ss_pred HHHHHCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9998648-61143299999989999999999987278887552269999899999999987
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=30.50 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=133.3
Q ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-C-C-------CCCCHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHH-
Q ss_conf 312211219999999999999986130137778-7-7-------774201454325-55999999999999-9840133-
Q 003627 551 QLCCRINTFQHIRKELEVLEKKTVHQLRSSHST-R-T-------DNITNGIEKRFE-LSAASSVEAIQQLS-EAIAYKV- 618 (807)
Q Consensus 551 ~lCVrLNnL~yi~~qL~~Lek~i~~~~~~~~s~-~-~-------~~~~d~l~~~F~-~s~~~~~~ai~~l~-e~ia~rv- 618 (807)
..||-|||++-...-+.+|-+.+...+...=+. . + .+...++.. |. ..+..++++|+++. .++.-|+
T Consensus 21 ~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~-~~~k~~~ll~~gi~~Lf~~~ikprLr 99 (263)
T 3hr0_A 21 SFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAA-VSNKFRDLLQEGLTELNSTAIKPQVQ 99 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67302265999999999999999888998689864106789999999999999-99999999999999999997698899
Q ss_pred ----EEECCHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ----111321465631046-877754506559988978999995525766779999999999999999992699999889
Q 003627 619 ----IFHDLSHVLWDGLYV-GEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFT 693 (807)
Q Consensus 619 ----VF~Dl~~~l~~~LY~-g~V~~~RI~plL~~Ld~~L~~l~~~l~d~~r~~vi~~l~kA~~~~~l~VLL~GGpsR~Fs 693 (807)
.|.|.++.+-+.-|. .+..+.-++-+...+++.|.-+..+++....++++.-+....-..++..++. ..|+
T Consensus 100 ~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~----~~fn 175 (263)
T 3hr0_A 100 PWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK----STFN 175 (263)
T ss_dssp HHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT----CCBC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH----CCCC
T ss_conf 999987253356777677551016689999999999999999987185799999999999999999999982----7707
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 20537999999999975200999985888988588686410233358589999999987764079988778899989998
Q 003627 694 HQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLTLESYGSSAKSRLPLPPTSGQW 773 (807)
Q Consensus 694 ~~D~~iiEeDl~~Lk~~F~A~GeGLp~~~vek~~~~v~~vL~L~~~~Td~LIe~f~~~~~~~~g~~~~~~lp~p~t~~~w 773 (807)
.--.--+|.|++.|-.+|+.-|+ ..+-|+. ..+.+++.++..+...=+.+| ..+..| ...|
T Consensus 176 ~lGal~LdrDvr~li~~~~~~~~---~~lRekF-~RL~QI~~lLnle~~eev~d~---~~~~~~------------~~~W 236 (263)
T 3hr0_A 176 RLGGLQFDKELRSLIAYLTTVTT---WTIRDKF-ARLSQMATILNLERVTEILDY---WGPNSG------------PLTW 236 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC---TTHHHHT-HHHHHHHHHHTCSSGGGGGGT---SGGGGT------------TCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC---HHHHHHH-HHHHHHHHHHCCCCHHHHHHH---HCCCCC------------CCCC
T ss_conf 05589999999999999970466---1166899-999999999847976899987---334678------------8533
Q ss_pred CCCCCCCEEEECCCCCCHHH
Q ss_conf 99997641110025698148
Q 003627 774 NPTEPNTVLRVLCYRSDETA 793 (807)
Q Consensus 774 ~~~d~ntiLRVLchR~D~~A 793 (807)
.-+|+-+-|||..|.|-..
T Consensus 237 -~Ls~~E~r~il~lRvDf~~ 255 (263)
T 3hr0_A 237 -RLTPAEVRQVLALRIDFRS 255 (263)
T ss_dssp -CSCHHHHHHHHTTBTTSCH
T ss_pred -CCCHHHHHHHHHHHCCCCH
T ss_conf -4799999999985636989
No 5
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=1.00 E-value=1 Score=15.31 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 6779999999999999999992699999889205379999
Q 003627 663 VRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEE 702 (807)
Q Consensus 663 ~r~~vi~~l~kA~~~~~l~VLL~GGpsR~Fs~~D~~iiEe 702 (807)
++...+ .-++|.+-.|..||++-+..|.|++.|.+.+-+
T Consensus 61 ~~ek~~-rn~rA~~vlf~~vL~DE~g~rvFsd~D~~~v~~ 99 (130)
T 2ob9_A 61 VSEKAH-RNLCADVVLFIDVLCDTDKQPVFSVDEEEQVRE 99 (130)
T ss_dssp HHHHHH-HHHHHHHHHHHHHEECTTSCBSSCGGGHHHHHT
T ss_pred HHHHHH-HHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 899988-740113888889883578863578879999999
No 6
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=1.00 E-value=1 Score=15.22 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 1564999999688655521565477
Q 003627 128 VIEEVDEVLELIKKTWEILGVNQML 152 (807)
Q Consensus 128 v~~E~dE~lel~k~tW~~LGI~~~~ 152 (807)
+-.|++++|.+..+.|--||+|+.+
T Consensus 98 Ln~Eae~~L~l~~~LWdSL~Ln~~i 122 (158)
T 1nrj_A 98 LNQETQQTLALVLKLWNSLHLSESI 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 4828999999999999861731888
No 7
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=15.02 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHC-CCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9769998852210-284678641105799999998754325667889554344589741456769999999999997899
Q 003627 346 GNELRQFVSGITE-LTPDAIQVLLAADKLEKNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLK 424 (807)
Q Consensus 346 g~dLk~~L~~~~~-lt~~~~~vl~aAd~LEk~L~~i~~e~s~~~~dggk~~ir~l~Py~ie~~~~~~v~~Wi~e~~~k~~ 424 (807)
+.++...+..-+. -|++ .+..+++|+|+.+|...-.+...+... -.++.+..-...+.-+.++.|+++-...=.
T Consensus 118 ~~e~~~Lw~Eye~~~t~E-a~~vK~aDkle~llqa~ey~~~Gn~~~----~l~~ff~~~~~~~~~~~~~~~~~~l~~~r~ 192 (204)
T 4dmb_A 118 RKELYELWEEYETQSSAE-AKFVKQLDQCEMILQASEYEDLEHKPG----RLQDFYDSTAGKFNHPEIVQLVSELEAERS 192 (204)
T ss_dssp HHHHHHHHHHHHHTCSHH-HHHHHHHHHHHHHHHHHHHHHHHTCTT----TTHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 999999999987379899-999999999879999999998289776----799999998877089899999999999999
Q ss_pred HHH
Q ss_conf 999
Q 003627 425 EWV 427 (807)
Q Consensus 425 ewv 427 (807)
...
T Consensus 193 ~~~ 195 (204)
T 4dmb_A 193 TNI 195 (204)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 987
No 8
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=1.00 E-value=1 Score=14.93 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 145432555999999999999984
Q 003627 591 GIEKRFELSAASSVEAIQQLSEAI 614 (807)
Q Consensus 591 ~l~~~F~~s~~~~~~ai~~l~e~i 614 (807)
.....|+...+.++..++...+.+
T Consensus 49 kFee~fe~l~s~l~~f~e~a~e~v 72 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNEFDEAAQEQI 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998537776
No 9
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=1.00 E-value=1 Score=14.81 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999998511578996415649999996886555215
Q 003627 110 RIYRILLEACFDVNEPTSVIEEVDEVLELIKKTWEILG 147 (807)
Q Consensus 110 ~ly~~LL~~~FD~~de~~v~~E~dE~lel~k~tW~~LG 147 (807)
.||.-...-+-.+..+...+|||..+|+-++.+|...+
T Consensus 84 ~LY~y~~~~LAn~~~d~~~l~ev~~ll~~lreaW~~i~ 121 (130)
T 1orj_A 84 TIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEVK 121 (130)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985414999999999999999999999988
No 10
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=1.00 E-value=1 Score=13.96 Aligned_cols=23 Identities=39% Similarity=0.849 Sum_probs=0.0
Q ss_pred CCCCC--CCCCCCCHHHHHHHHHHH
Q ss_conf 74424--568857299999999851
Q 003627 97 EKCHW--AEGFPLNLRIYRILLEAC 119 (807)
Q Consensus 97 e~chW--adg~plN~~ly~~LL~~~ 119 (807)
|+|-| |.|||=-..|||...+-|
T Consensus 25 eAC~WLRaaGFPQYAqlyed~~FPI 49 (91)
T 2dky_A 25 EACDWLRATGFPQYAQLYEDFLFPI 49 (91)
T ss_dssp HHHHHHHHHTCTTHHHHHHTTCCSC
T ss_pred HHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 9999999837707888631660422
Done!