Query 003628
Match_columns 807
No_of_seqs 470 out of 3911
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 18:41:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003628.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1675-1679//hhsearch_pdb/003628hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 403.9 15.1 261 481-759 41-320 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 402.3 11.8 261 481-759 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 397.4 12.9 258 481-756 26-304 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 394.2 16.0 265 480-762 35-304 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 388.5 12.1 271 471-758 54-347 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 383.6 13.7 251 480-751 23-276 (350)
7 4fie_A Serine/threonine-protei 1.0 1 1 382.3 16.9 250 480-751 150-400 (423)
8 3hmm_A TGF-beta receptor type- 1.0 1 1 381.9 13.0 272 481-758 3-297 (303)
9 4fih_A Serine/threonine-protei 1.0 1 1 381.5 15.2 249 481-751 74-323 (346)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 379.8 15.2 266 479-768 56-326 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.88 Aligned_cols=261 Identities=27% Similarity=0.433 Sum_probs=218.9
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 38764585443797138999935------995999999155472058999999999983368834678638873886799
Q 003628 481 NNFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKML 554 (807)
Q Consensus 481 ~~f~~~~~Lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 554 (807)
++|.+.++||+|+||.||+|++. ++..||||++........++|.+|+++|++++|||||+++|+|.+....+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCCCCCCCCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCC
Q ss_conf 9982489981100038888------------8778902268899998966576540588848907789998242589981
Q 003628 555 IYEYMPNRSLDALLFDPLK------------KERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNP 622 (807)
Q Consensus 555 V~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~ 622 (807)
||||+++|+|.++++.... ...++|.++++|+.||++||+|||+.+ |+||||||+||||+.++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCCE
T ss_conf 9982799939999986075410012211245788999999999999999999984088---4226666764898899968
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2211466201389998642110222678558111125988965545502587899784-998987667730154444330
Q 003628 623 KISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAWKL 701 (807)
Q Consensus 623 kI~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~ellt-G~~p~~~~~~~~~l~~~~~~~ 701 (807)
||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||........+. .
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~-~---- 272 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAID-C---- 272 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHH-H----
T ss_pred EECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-H----
T ss_conf 97666033365678753004764556566582654479999663001057899999828999999989999999-9----
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 0122210002765557843189999999999765548858999988999997202378
Q 003628 702 WNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRD 759 (807)
Q Consensus 702 ~~~~~~~~~~d~~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~~ 759 (807)
...+. .+ +.+..++.++.+|+.+||+.||++||||.||+++|+.+.+.
T Consensus 273 i~~g~-----~~-----~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 273 ITQGR-----EL-----ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHHTC-----CC-----CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHCCC-----CC-----CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 98089-----89-----98644639999999997475965792999999999987458
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=402.28 Aligned_cols=261 Identities=28% Similarity=0.464 Sum_probs=218.5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEE
Q ss_conf 38764585443797138999935------995999999155472058999999999983368834678638873886799
Q 003628 481 NNFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKML 554 (807)
Q Consensus 481 ~~f~~~~~Lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 554 (807)
++|.+.++||+|+||.||+|++. ++..||||+++....+..++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCCCCCCCCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEE
Q ss_conf 99824899811000388----------88877890226889999896657654058884890778999824258998122
Q 003628 555 IYEYMPNRSLDALLFDP----------LKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKI 624 (807)
Q Consensus 555 V~e~~~~gsL~~~l~~~----------~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~kI 624 (807)
||||+++|+|.++|+.. .....++|.++++++.||++||.|||+++ |+||||||+||||+.++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEE
T ss_conf 99858999689999860864211123577788999999999999999999997599---046765776389879986898
Q ss_pred ECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 11466201389998642110222678558111125988965545502587899784-99898766773015444433001
Q 003628 625 SDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAWKLWN 703 (807)
Q Consensus 625 ~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~ellt-G~~p~~~~~~~~~l~~~~~~~~~ 703 (807)
+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||...+....... ..
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~-----i~ 244 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIEC-----IT 244 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH-----HH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-----HH
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899999999-----98
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 22210002765557843189999999999765548858999988999997202378
Q 003628 704 ENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRD 759 (807)
Q Consensus 704 ~~~~~~~~d~~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~~ 759 (807)
.+.. .+.+..++.++.+++.+||+.||++|||+++|++.|+.+.+.
T Consensus 245 ~~~~----------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 245 QGRV----------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCC----------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 0898----------899741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=397.36 Aligned_cols=258 Identities=28% Similarity=0.438 Sum_probs=213.3
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC------CCCEEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEE
Q ss_conf 38764585443797138999935------99599999915547-205899999999998336883467863887388679
Q 003628 481 NNFQLSSKLGQGGFGPVYWGRLK------DGQEIAVKRLSKAS-GQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKM 553 (807)
Q Consensus 481 ~~f~~~~~Lg~G~~g~Vy~~~~~------~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 553 (807)
.++++.++||+|+||.||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+....+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCCCCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC
Q ss_conf 99982489981100038888-------------87789022688999989665765405888489077899982425899
Q 003628 554 LIYEYMPNRSLDALLFDPLK-------------KERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEEL 620 (807)
Q Consensus 554 lV~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~ 620 (807)
+||||+++|+|.++|..... ...++|.++++|+.|||+||+|||+.+ |+||||||+||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCHHHHHHH
Q ss_conf 812211466201389998642110222678558111125988965545502587899784-9989876677301544443
Q 003628 621 NPKISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSFFEDDLTILGYAW 699 (807)
Q Consensus 621 ~~kI~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~ellt-G~~p~~~~~~~~~l~~~~~ 699 (807)
.+||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||........ ...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~-~~~-- 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV-VEM-- 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHH-HHH--
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHH--
T ss_conf 78988760202336777404734512577656989982799996300015799999999689999999899999-999--
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 300122210002765557843189999999999765548858999988999997202
Q 003628 700 KLWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSE 756 (807)
Q Consensus 700 ~~~~~~~~~~~~d~~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~ 756 (807)
...+.. .+.+.+++.++.+++.+||+.||++||+|.||++.|+..
T Consensus 260 --i~~~~~----------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 --IRNRQV----------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp --HHTTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --HHCCCC----------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf --981998----------999620369999999997587965792999999999853
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.25 Aligned_cols=265 Identities=28% Similarity=0.462 Sum_probs=213.7
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 2387645854437971389999359959999991554--72058999999999983368834678638873886799998
Q 003628 480 TNNFQLSSKLGQGGFGPVYWGRLKDGQEIAVKRLSKA--SGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYE 557 (807)
Q Consensus 480 ~~~f~~~~~Lg~G~~g~Vy~~~~~~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e 557 (807)
.+++.+.++||+|+||.||+|++. ..||||.++.. ..+..+.|.+|++++++++|||||+++|++.+ +..+||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 799498449820888689999989--968999997268999999999999999985899887469999978-95899997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCC
Q ss_conf 24899811000388888778902268899998966576540588848907789998242589981221146620138999
Q 003628 558 YMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQ 637 (807)
Q Consensus 558 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~kI~DFGla~~~~~~~ 637 (807)
|+++|+|.++|+. ....+++.++++|+.|||+||+|||+.+ |+||||||+||||++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCCHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 4899878898752--4899999999999999999999997799---5278557899788899908994415754246677
Q ss_pred CCCCCCEEECCCCCCCHHHHCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8642110222678558111125---9889655455025878997849989876677301544443300122210002765
Q 003628 638 DQADTGRVVGTFGYMSPEYAME---GRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPF 714 (807)
Q Consensus 638 ~~~~~~~~~gt~~y~APE~~~~---~~~s~~sDV~SlGvil~elltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 714 (807)
........+||+.|||||++.. ..|+.++|||||||++|||+||+.||........+...... + ...|.
T Consensus 187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~----~----~~~p~ 258 (307)
T 3omv_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR----G----YASPD 258 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHT----T----CCCCC
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC----C----CCCCC
T ss_conf 640315644687724987861468998786877572899999999788998999969999999965----8----88887
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 557843189999999999765548858999988999997202378999
Q 003628 715 LSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRDLPY 762 (807)
Q Consensus 715 l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~~~~~ 762 (807)
+. ..+.+++..+.+++.+||+.||++||||.||++.|+.+...+|.
T Consensus 259 ~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 259 LS--KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp ST--TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred CC--CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 20--03544569999999997577976890989999999997450789
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=388.50 Aligned_cols=271 Identities=27% Similarity=0.358 Sum_probs=219.8
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECC------CCEEEEEEECCCCC-CCHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 4988999972387645854437971389999359------95999999155472-058999999999983368-834678
Q 003628 471 FQFEELATATNNFQLSSKLGQGGFGPVYWGRLKD------GQEIAVKRLSKASG-QGLEEFMNEVMVISKLQH-RNLVRL 542 (807)
Q Consensus 471 ~~~~~l~~~~~~f~~~~~Lg~G~~g~Vy~~~~~~------g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H-~niv~l 542 (807)
+...+.+...++|++.+.||+|+||.||+|+... ++.||||.+..... ...+.|.+|+++|.++.| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CEEEEEEEECCCCCCCCCCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 6388738-86799998248998110003888-------------887789022688999989665765405888489077
Q 003628 543 LGCCVEG-EEKMLIYEYMPNRSLDALLFDPL-------------KKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRD 608 (807)
Q Consensus 543 ~g~~~~~-~~~~lV~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~D 608 (807)
+|+|.+. ...++|||||++|+|.++|+... ....+++.+++.++.|||+||+|||+++ |+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCC
T ss_conf 899994697799999838989799999743566654333410110356899999999999999987676278---43574
Q ss_pred CCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 899982425899812211466201389998642110222678558111125988965545502587899784-9989876
Q 003628 609 LKASNILLDEELNPKISDFGMAKIFGGNQDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVS-GRKNTSF 687 (807)
Q Consensus 609 Ikp~NIll~~~~~~kI~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~ellt-G~~p~~~ 687 (807)
|||+|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 67730154444330012221000276555784318999999999976554885899998899999720237
Q 003628 688 FEDDLTILGYAWKLWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIR 758 (807)
Q Consensus 688 ~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~ 758 (807)
......+.... .++.. +. .+...+.++.+++.+||+.||++|||+.||++.|+.+++
T Consensus 291 ~~~~~~~~~~i----~~g~~-----~~-----~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 291 VKIDEEFCRRL----KEGTR-----MR-----APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp CCCSHHHHHHH----HHTCC-----CC-----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HCCCC-----CC-----CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 89899999999----73898-----88-----886578999999999768696679399999999999998
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=383.57 Aligned_cols=251 Identities=22% Similarity=0.356 Sum_probs=208.9
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEE
Q ss_conf 238764585443797138999935-9959999991554--7205899999999998336883467863887388679999
Q 003628 480 TNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKA--SGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIY 556 (807)
Q Consensus 480 ~~~f~~~~~Lg~G~~g~Vy~~~~~-~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 556 (807)
.++|++.++||+|+||.||+++.. +++.||||++.+. .....+.+.+|++++++++|||||++++++.+.+..++||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCC
Q ss_conf 82489981100038888877890226889999896657654058884890778999824258998122114662013899
Q 003628 557 EYMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGN 636 (807)
Q Consensus 557 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~kI~DFGla~~~~~~ 636 (807)
||+++|+|.+++... ....+++.++..++.||+.||.|||+++ |+||||||+||||+.++.+||+|||+++.+...
T Consensus 103 Ey~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred ECCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 488998399999973-8999978999999999999999999899---151359789979878999897646521440688
Q ss_pred CCCCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98642110222678558111125988965545502587899784998987667730154444330012221000276555
Q 003628 637 QDQADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLS 716 (807)
Q Consensus 637 ~~~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~elltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~ 716 (807)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||...+....+.. ... +.. +
T Consensus 179 --~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~----i~~-~~~-----~--- 243 (350)
T 4b9d_A 179 --VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLK----IIS-GSF-----P--- 243 (350)
T ss_dssp --HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH----HHH-TCC-----C---
T ss_pred --CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----HHC-CCC-----C---
T ss_conf --5410145788360399998799989599999999999999978799899699999999----980-899-----9---
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 78431899999999997655488589999889999
Q 003628 717 ESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVS 751 (807)
Q Consensus 717 ~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~ 751 (807)
+.+...+.++.+++.+||+.||++|||+.|+++
T Consensus 244 --~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 --PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp --CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf --997557999999999985589667908999963
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=382.31 Aligned_cols=250 Identities=22% Similarity=0.319 Sum_probs=210.3
Q ss_pred HCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEE
Q ss_conf 238764585443797138999935-9959999991554720589999999999833688346786388738867999982
Q 003628 480 TNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEY 558 (807)
Q Consensus 480 ~~~f~~~~~Lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e~ 558 (807)
.+.|++.++||+|+||.||+|+.. +|+.||||++........+.+.+|+.+|++++|||||++++++.+.+..+|||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCC
Q ss_conf 48998110003888887789022688999989665765405888489077899982425899812211466201389998
Q 003628 559 MPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQD 638 (807)
Q Consensus 559 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~kI~DFGla~~~~~~~~ 638 (807)
+++|+|.+++. ...+++.++..++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+++.+.....
T Consensus 230 ~~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~ 302 (423)
T 4fie_A 230 LEGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 302 (423)
T ss_dssp CTTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred CCCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCCC
T ss_conf 89982898876----169899999999999999999999889---04465787778985899989803726547778876
Q ss_pred CCCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 64211022267855811112598896554550258789978499898766773015444433001222100027655578
Q 003628 639 QADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLSES 718 (807)
Q Consensus 639 ~~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~elltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 718 (807)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||........+.. +.....+.+.
T Consensus 303 --~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~----------i~~~~~~~~~-- 368 (423)
T 4fie_A 303 --RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM----------IRDNLPPRLK-- 368 (423)
T ss_dssp --CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH----------HHHSCCCCCS--
T ss_pred --CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----------HHCCCCCCCC--
T ss_conf --43466647472799997799999689999999999999978799898699999999----------9727998876--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 431899999999997655488589999889999
Q 003628 719 SFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVS 751 (807)
Q Consensus 719 ~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~ 751 (807)
.......++.+++.+||+.||++|||+.|+++
T Consensus 369 -~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 369 -NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -50129999999999986789568909999960
No 8
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=381.85 Aligned_cols=272 Identities=21% Similarity=0.275 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEEE
Q ss_conf 3876458544379713899993599599999915547205899999999998336883467863887388----679999
Q 003628 481 NNFQLSSKLGQGGFGPVYWGRLKDGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGE----EKMLIY 556 (807)
Q Consensus 481 ~~f~~~~~Lg~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lV~ 556 (807)
+++.+.++||+|+||.||+|++. |+.||||++...... ...+..|+..+.+++||||++++|++.+.+ ..+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-989999998831336-6999999999860899988709999984688723788775
Q ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEECCCCCCCEEECCCCCCEEECCCCCC
Q ss_conf 8248998110003888887789022688999989665765405-----88848907789998242589981221146620
Q 003628 557 EYMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRD-----SRLRIIHRDLKASNILLDEELNPKISDFGMAK 631 (807)
Q Consensus 557 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~-----~~~~ivH~DIkp~NIll~~~~~~kI~DFGla~ 631 (807)
||+++|+|.++++ ...++|..+.+++.|+++||+|||++ ..++|+||||||+||||+.++.+||+|||+++
T Consensus 81 Ey~~~gsL~~~l~----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred CCCCCCCHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 1789996899997----579998999999999999999999852400478987624678420899889978998479874
Q ss_pred CCCCCCCCC--CCCEEECCCCCCCHHHHCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCC-HHHHH-----
Q ss_conf 138999864--21102226785581111259------88965545502587899784998987667730-15444-----
Q 003628 632 IFGGNQDQA--DTGRVVGTFGYMSPEYAMEG------RFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDL-TILGY----- 697 (807)
Q Consensus 632 ~~~~~~~~~--~~~~~~gt~~y~APE~~~~~------~~s~~sDV~SlGvil~elltG~~p~~~~~~~~-~l~~~----- 697 (807)
......... .....+||+.|+|||++.+. .++.++|||||||++|||+||+.|+....+.. .....
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 55677773221046424664626988845654556776570676664799999998789987766522353100254543
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 4330012221000276555784318999999999976554885899998899999720237
Q 003628 698 AWKLWNENKILALVDPFLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIR 758 (807)
Q Consensus 698 ~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~ 758 (807)
.............++|.+.......+.+..+.+++.+||+.||++||||.||+++|+.+.+
T Consensus 237 ~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~ 297 (303)
T 3hmm_A 237 SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 0999999875025799887655665899999999999760597579599999999998898
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=381.55 Aligned_cols=249 Identities=22% Similarity=0.320 Sum_probs=209.9
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEEC
Q ss_conf 38764585443797138999935-99599999915547205899999999998336883467863887388679999824
Q 003628 481 NNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYEYM 559 (807)
Q Consensus 481 ~~f~~~~~Lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e~~ 559 (807)
+.|++.++||+|+||.||+|+.. +|+.||||++........+.+.+|+++|++++|||||++++++.+++..+|||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89981100038888877890226889999896657654058884890778999824258998122114662013899986
Q 003628 560 PNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMAKIFGGNQDQ 639 (807)
Q Consensus 560 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~~~kI~DFGla~~~~~~~~~ 639 (807)
++|+|.+++. ...+++.++..++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+++.+.....
T Consensus 154 ~gg~L~~~l~----~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~- 225 (346)
T 4fih_A 154 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP- 225 (346)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC-
T ss_pred CCCCHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCC-
T ss_conf 9980899987----189899999999999999999999888---35562788997887999889902757536678877-
Q ss_pred CCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 42110222678558111125988965545502587899784998987667730154444330012221000276555784
Q 003628 640 ADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDPFLSESS 719 (807)
Q Consensus 640 ~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~elltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 719 (807)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||...+....+.. +.....+.+.
T Consensus 226 -~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~----------i~~~~~~~~~--- 291 (346)
T 4fih_A 226 -RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKM----------IRDNLPPRLK--- 291 (346)
T ss_dssp -CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH----------HHHSSCCCCS---
T ss_pred -CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----------HHCCCCCCCC---
T ss_conf -53465627582799997799999689999999999999978799898599999999----------9717999887---
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 31899999999997655488589999889999
Q 003628 720 FQLDMIIRCIHVGLLCVQELVKDRPNMSTVVS 751 (807)
Q Consensus 720 ~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~ 751 (807)
.....+.++.+++.+||+.||++|||+.|+++
T Consensus 292 ~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 292 NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 50229999999999986799568909999960
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=379.80 Aligned_cols=266 Identities=21% Similarity=0.239 Sum_probs=214.8
Q ss_pred HHCCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEE
Q ss_conf 7238764585443797138999935-995999999155472058999999999983368834678638873886799998
Q 003628 479 ATNNFQLSSKLGQGGFGPVYWGRLK-DGQEIAVKRLSKASGQGLEEFMNEVMVISKLQHRNLVRLLGCCVEGEEKMLIYE 557 (807)
Q Consensus 479 ~~~~f~~~~~Lg~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~e 557 (807)
..+.|.+.++||+|+||.||+++.. +++.||||++..... ..+|+.++++++|||||++++++.+++..+||||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 53351768685138780999999889998999999788886-----9999999985799899939999998999999996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CCEEECCCCCCCCCCC
Q ss_conf 248998110003888887789022688999989665765405888489077899982425899-8122114662013899
Q 003628 558 YMPNRSLDALLFDPLKKERLDWRKRFNIIEGISRGLLYLHRDSRLRIIHRDLKASNILLDEEL-NPKISDFGMAKIFGGN 636 (807)
Q Consensus 558 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~~L~yLH~~~~~~ivH~DIkp~NIll~~~~-~~kI~DFGla~~~~~~ 636 (807)
|+++|+|.+++. +.+.+++.++..++.||+.||+|||+++ |+||||||+||||+.++ .+||+|||+++.+...
T Consensus 131 y~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 131 LLEGGSLGQLIK---QMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCCCHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 659986999998---7699999999999999999999999889---0426167788799589997999627877685678
Q ss_pred CCC---CCCCEEECCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 986---42110222678558111125988965545502587899784998987667730154444330012221000276
Q 003628 637 QDQ---ADTGRVVGTFGYMSPEYAMEGRFSEKSDVFSFGVLLLEIVSGRKNTSFFEDDLTILGYAWKLWNENKILALVDP 713 (807)
Q Consensus 637 ~~~---~~~~~~~gt~~y~APE~~~~~~~s~~sDV~SlGvil~elltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~d~ 713 (807)
... ......+||+.|||||++.+..++.++||||+||++|||++|+.||............. ....
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~----~~~~------- 273 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIA----SEPP------- 273 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHH----HSCC-------
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH----CCCC-------
T ss_conf 76540221785455802008999889998908999999999999997869989989999999998----0899-------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5557843189999999999765548858999988999997202378999999985
Q 003628 714 FLSESSFQLDMIIRCIHVGLLCVQELVKDRPNMSTVVSMLNSEIRDLPYPKEPAF 768 (807)
Q Consensus 714 ~l~~~~~~~~~~~~l~~ii~~Cl~~dP~~RPt~~evl~~L~~~~~~~~~p~~p~~ 768 (807)
.. ...+...+..+.+++.+||+.||++|||+.|+++.|...+.+...-..|-.
T Consensus 274 ~~--~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~ 326 (336)
T 4g3f_A 274 PI--REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK 326 (336)
T ss_dssp GG--GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred CC--HHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 80--025866799999999997628976895999999999999754432169876
Done!