BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003629
         (806 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PYX|A Chain A, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
 pdb|2PYX|B Chain B, Crystal Structure Of Tryptophan Halogenase (Yp_750003.1)
           From Shewanella Frigidimarina Ncimb 400 At 1.50 A
           Resolution
          Length = 526

 Score = 31.6 bits (70), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 662 GRMAENSGVKVTLVRFVHQASGAATGGIAERA-TSDISTENGISLDEAAVDDFMRKCDGS 720
           G +A +  + +TL+    ++   AT G+ E    S  ST + I +DE   +DF+R+CD S
Sbjct: 35  GVLAHSPKLNITLI----ESPDVATIGVGEGTWPSXRSTLSKIGIDE---NDFIRQCDAS 87

Query: 721 VECEEKVMGTVKDEVLKIGQS 741
            +   + +   KD    +  S
Sbjct: 88  FKQGSRFINWCKDPQSNVADS 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,024,593
Number of Sequences: 62578
Number of extensions: 805602
Number of successful extensions: 1623
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1623
Number of HSP's gapped (non-prelim): 7
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)