Query 003629
Match_columns 806
No_of_seqs 325 out of 2323
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-144 3E-149 1293.2 83.3 763 10-799 24-798 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 2E-117 3E-122 1043.4 56.5 754 8-798 2-767 (769)
3 PRK03562 glutathione-regulated 100.0 6.7E-49 1.4E-53 458.8 51.7 487 28-580 4-494 (621)
4 PRK10669 putative cation:proto 100.0 4.2E-48 9.2E-53 451.1 52.1 424 30-485 7-437 (558)
5 PRK03659 glutathione-regulated 100.0 8.6E-48 1.9E-52 449.0 52.7 485 29-578 5-492 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 1.1E-44 2.3E-49 401.7 44.8 381 28-438 5-388 (397)
7 PRK05326 potassium/proton anti 100.0 1E-39 2.2E-44 380.3 40.6 386 27-439 4-392 (562)
8 COG4651 RosB Kef-type K+ trans 100.0 1.3E-35 2.8E-40 296.5 30.2 382 32-439 9-392 (408)
9 TIGR00932 2a37 transporter, mo 100.0 7.2E-35 1.6E-39 310.3 31.7 271 39-338 2-273 (273)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 3.1E-39 6.6E-44 361.0 -4.0 374 36-434 3-378 (380)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.1E-27 2.5E-32 275.3 39.4 373 17-406 3-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 8.2E-27 1.8E-31 268.3 38.1 334 35-399 4-363 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 9.9E-25 2.1E-29 244.2 39.6 351 29-402 6-368 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 4.8E-23 1E-27 236.8 36.8 384 31-434 11-416 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1E-23 2.2E-28 221.4 28.3 380 27-436 5-387 (574)
16 PRK11175 universal stress prot 99.8 7.6E-18 1.7E-22 182.6 20.4 285 462-795 4-300 (305)
17 KOG1965 Sodium/hydrogen exchan 99.7 1.7E-16 3.7E-21 175.5 22.4 390 29-438 35-458 (575)
18 PRK14853 nhaA pH-dependent sod 99.7 7.7E-15 1.7E-19 160.2 33.7 270 90-403 63-363 (423)
19 KOG4505 Na+/H+ antiporter [Ino 99.7 1.3E-15 2.8E-20 155.4 24.9 355 33-402 18-382 (467)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 3.1E-12 6.7E-17 137.2 22.3 269 89-403 52-344 (373)
21 cd01988 Na_H_Antiporter_C The 99.4 3.7E-12 8E-17 119.7 13.3 131 463-620 1-131 (132)
22 KOG1966 Sodium/hydrogen exchan 99.3 3.2E-12 7E-17 140.9 6.7 377 39-434 52-448 (670)
23 PRK14856 nhaA pH-dependent sod 99.2 2.5E-09 5.5E-14 116.7 25.7 268 89-403 68-398 (438)
24 PRK09560 nhaA pH-dependent sod 99.1 2.4E-08 5.3E-13 107.6 25.4 268 90-402 60-352 (389)
25 PRK14854 nhaA pH-dependent sod 99.1 1.7E-08 3.7E-13 108.1 23.2 269 90-403 57-348 (383)
26 PRK09561 nhaA pH-dependent sod 99.1 3.7E-08 7.9E-13 106.0 24.9 268 90-403 60-351 (388)
27 PRK14855 nhaA pH-dependent sod 99.1 3.9E-08 8.4E-13 107.1 25.3 264 90-403 64-383 (423)
28 cd01989 STK_N The N-terminal d 99.0 8.7E-09 1.9E-13 98.8 12.9 140 463-620 1-143 (146)
29 PF06965 Na_H_antiport_1: Na+/ 98.9 2.5E-09 5.4E-14 114.9 9.0 272 88-404 54-352 (378)
30 PRK15456 universal stress prot 98.9 7.5E-09 1.6E-13 98.8 9.8 134 462-620 3-141 (142)
31 cd01989 STK_N The N-terminal d 98.9 1.3E-08 2.8E-13 97.6 10.9 139 643-795 1-145 (146)
32 cd01987 USP_OKCHK USP domain i 98.9 1.3E-08 2.9E-13 94.5 10.6 122 463-620 1-123 (124)
33 PRK15005 universal stress prot 98.9 1.9E-08 4.1E-13 96.1 11.3 136 462-620 3-143 (144)
34 cd01988 Na_H_Antiporter_C The 98.8 5.4E-08 1.2E-12 91.2 13.0 129 643-794 1-132 (132)
35 COG3004 NhaA Na+/H+ antiporter 98.8 8.1E-07 1.8E-11 91.7 22.1 258 98-404 71-355 (390)
36 PF00582 Usp: Universal stress 98.8 2E-08 4.3E-13 94.3 9.1 133 462-620 3-139 (140)
37 PRK09982 universal stress prot 98.8 2.3E-08 5E-13 95.5 9.6 136 641-795 3-139 (142)
38 PRK15005 universal stress prot 98.8 8.2E-08 1.8E-12 91.7 12.6 136 642-794 3-144 (144)
39 PRK15118 universal stress glob 98.8 3.7E-08 8.1E-13 94.2 9.8 134 462-620 4-137 (144)
40 PRK09982 universal stress prot 98.7 4.2E-08 9.2E-13 93.7 9.3 133 462-620 4-137 (142)
41 PF00582 Usp: Universal stress 98.7 1.1E-07 2.4E-12 89.1 10.5 133 642-794 3-140 (140)
42 cd01987 USP_OKCHK USP domain i 98.7 9.7E-08 2.1E-12 88.7 9.8 121 643-793 1-123 (124)
43 PRK15456 universal stress prot 98.7 2.1E-07 4.4E-12 88.9 11.8 134 641-794 2-142 (142)
44 PRK10116 universal stress prot 98.6 1.6E-07 3.5E-12 89.5 9.8 137 641-795 3-139 (142)
45 PRK10116 universal stress prot 98.6 2.6E-07 5.6E-12 88.1 11.1 134 462-620 4-137 (142)
46 cd00293 USP_Like Usp: Universa 98.6 3.6E-07 7.9E-12 84.6 11.8 130 463-620 1-130 (130)
47 PRK15118 universal stress glob 98.6 1.7E-07 3.8E-12 89.6 9.7 137 641-795 3-139 (144)
48 PRK11175 universal stress prot 98.5 3.3E-07 7.2E-12 99.3 10.5 143 462-625 153-303 (305)
49 cd00293 USP_Like Usp: Universa 98.2 1.6E-05 3.5E-10 73.4 11.4 127 643-793 1-130 (130)
50 COG0589 UspA Universal stress 98.0 6.6E-05 1.4E-09 71.8 11.7 142 462-620 6-150 (154)
51 PRK12460 2-keto-3-deoxyglucona 98.0 0.0015 3.3E-08 69.0 22.2 255 98-438 51-308 (312)
52 PRK12652 putative monovalent c 97.8 0.0001 2.2E-09 80.7 11.4 102 640-753 4-123 (357)
53 PF05684 DUF819: Protein of un 97.7 0.1 2.2E-06 58.0 32.4 310 52-409 24-352 (378)
54 COG0786 GltS Na+/glutamate sym 97.6 0.018 3.9E-07 62.3 23.3 158 242-400 170-360 (404)
55 TIGR00698 conserved hypothetic 97.6 0.12 2.6E-06 56.2 29.7 143 48-212 26-173 (335)
56 PF03390 2HCT: 2-hydroxycarbox 97.5 0.067 1.4E-06 59.1 26.0 334 30-408 30-394 (414)
57 COG0589 UspA Universal stress 97.4 0.0028 6.1E-08 60.4 13.5 142 640-795 4-152 (154)
58 PF03812 KdgT: 2-keto-3-deoxyg 97.4 0.025 5.5E-07 59.6 20.3 85 97-182 50-134 (314)
59 TIGR00210 gltS sodium--glutama 97.3 0.17 3.8E-06 56.4 26.8 96 289-387 244-342 (398)
60 PF03616 Glt_symporter: Sodium 97.2 0.27 6E-06 54.5 28.0 93 290-388 247-345 (368)
61 COG0385 Predicted Na+-dependen 97.2 0.34 7.4E-06 51.9 27.0 148 90-259 36-191 (319)
62 COG3493 CitS Na+/citrate sympo 97.1 0.14 3E-06 55.0 22.7 294 81-408 94-413 (438)
63 PF03601 Cons_hypoth698: Conse 96.9 0.31 6.7E-06 52.5 24.1 140 49-211 22-166 (305)
64 PRK12652 putative monovalent c 96.9 0.011 2.5E-07 64.8 13.0 132 461-618 5-147 (357)
65 COG0798 ACR3 Arsenite efflux p 96.7 0.92 2E-05 48.6 25.2 181 55-259 19-202 (342)
66 TIGR00793 kdgT 2-keto-3-deoxyg 96.6 0.11 2.3E-06 54.7 17.1 90 98-189 51-140 (314)
67 PRK03562 glutathione-regulated 96.5 0.074 1.6E-06 63.4 17.3 117 271-391 10-127 (621)
68 TIGR00932 2a37 transporter, mo 96.4 0.12 2.5E-06 55.1 16.3 132 278-415 4-137 (273)
69 PF13593 DUF4137: SBF-like CPA 96.3 1.5 3.2E-05 47.7 24.6 151 91-259 30-188 (313)
70 PRK03659 glutathione-regulated 96.1 0.18 3.8E-06 60.0 17.7 115 271-389 10-125 (601)
71 PRK10669 putative cation:proto 96.1 0.18 3.8E-06 59.6 17.6 133 273-411 13-146 (558)
72 TIGR00783 ccs citrate carrier 96.1 1.4 3.1E-05 47.8 22.6 260 107-408 40-327 (347)
73 PF03601 Cons_hypoth698: Conse 96.1 0.19 4.1E-06 54.1 16.0 127 273-402 5-137 (305)
74 PRK10490 sensor protein KdpD; 96.0 0.038 8.2E-07 68.8 11.8 124 460-621 249-373 (895)
75 TIGR00832 acr3 arsenical-resis 96.0 2.9 6.2E-05 45.8 24.9 102 96-210 47-152 (328)
76 COG0475 KefB Kef-type K+ trans 95.9 0.25 5.4E-06 55.6 16.9 137 271-415 11-153 (397)
77 PF03956 DUF340: Membrane prot 95.6 0.14 2.9E-06 51.2 11.5 130 57-212 2-136 (191)
78 COG2855 Predicted membrane pro 95.6 0.18 3.8E-06 54.1 12.7 112 284-398 31-142 (334)
79 PRK05326 potassium/proton anti 95.4 0.37 8.1E-06 56.9 16.4 116 274-392 14-132 (562)
80 PF05145 AmoA: Putative ammoni 95.4 5.2 0.00011 43.6 27.0 126 272-404 158-286 (318)
81 PF06826 Asp-Al_Ex: Predicted 95.0 0.63 1.4E-05 45.6 13.7 124 38-180 6-136 (169)
82 PRK10490 sensor protein KdpD; 94.9 0.13 2.9E-06 64.0 11.0 124 640-793 249-372 (895)
83 COG2855 Predicted membrane pro 94.8 7.2 0.00016 42.1 25.2 101 49-168 33-133 (334)
84 TIGR00698 conserved hypothetic 94.7 0.95 2.1E-05 49.3 15.8 123 273-398 9-139 (335)
85 PRK05274 2-keto-3-deoxyglucona 94.6 4.8 0.0001 43.8 20.6 46 99-144 54-99 (326)
86 PF01758 SBF: Sodium Bile acid 94.5 2.9 6.4E-05 41.7 17.9 104 96-215 2-112 (187)
87 TIGR00841 bass bile acid trans 94.5 8 0.00017 41.4 27.4 103 95-212 11-118 (286)
88 PLN03159 cation/H(+) antiporte 94.4 0.92 2E-05 55.9 16.5 115 639-753 456-580 (832)
89 PRK03818 putative transporter; 94.2 1.3 2.8E-05 52.0 16.4 130 32-181 9-143 (552)
90 COG3180 AbrB Putative ammonia 93.5 14 0.0003 40.3 30.5 101 30-145 7-110 (352)
91 TIGR00844 c_cpa1 na(+)/h(+) an 93.0 2.7 5.9E-05 50.6 16.3 69 322-392 75-145 (810)
92 COG2205 KdpD Osmosensitive K+ 93.0 0.46 1E-05 56.3 9.8 129 459-623 246-374 (890)
93 PF03616 Glt_symporter: Sodium 92.7 0.58 1.2E-05 52.0 9.9 116 322-438 66-187 (368)
94 TIGR00831 a_cpa1 Na+/H+ antipo 92.7 1.4 3E-05 51.6 13.4 116 274-394 6-123 (525)
95 COG1346 LrgB Putative effector 92.5 11 0.00023 38.4 17.4 111 310-433 61-171 (230)
96 TIGR03802 Asp_Ala_antiprt aspa 92.5 1 2.2E-05 53.0 12.0 93 36-144 13-113 (562)
97 TIGR03082 Gneg_AbrB_dup membra 92.5 7 0.00015 37.7 15.9 121 275-402 4-127 (156)
98 TIGR01625 YidE_YbjL_dupl AspT/ 92.1 0.81 1.8E-05 44.0 8.7 113 53-182 21-139 (154)
99 TIGR03802 Asp_Ala_antiprt aspa 91.0 1.8 3.9E-05 51.0 11.9 115 50-181 412-531 (562)
100 PRK04972 putative transporter; 90.8 1.7 3.7E-05 51.1 11.5 120 33-179 16-140 (558)
101 TIGR03082 Gneg_AbrB_dup membra 90.7 2.4 5.1E-05 41.0 10.5 97 36-146 2-100 (156)
102 PRK04288 antiholin-like protei 90.1 19 0.00042 37.0 16.8 109 311-432 65-173 (232)
103 COG0786 GltS Na+/glutamate sym 89.9 1.4 3E-05 48.2 8.8 116 322-438 68-188 (404)
104 TIGR00946 2a69 he Auxin Efflux 89.0 9.1 0.0002 41.7 14.7 134 51-208 180-314 (321)
105 cd01984 AANH_like Adenine nucl 88.0 1.2 2.6E-05 38.0 5.6 49 562-618 35-84 (86)
106 COG2205 KdpD Osmosensitive K+ 87.5 2.8 6.1E-05 50.0 9.7 116 641-782 248-363 (890)
107 COG2985 Predicted permease [Ge 87.2 1.3 2.9E-05 49.4 6.6 103 95-208 62-173 (544)
108 TIGR00808 malonate_madM malona 87.2 7.4 0.00016 38.5 10.9 108 32-146 16-133 (254)
109 PF03547 Mem_trans: Membrane t 86.8 5.9 0.00013 44.3 11.9 135 294-436 10-147 (385)
110 TIGR02432 lysidine_TilS_N tRNA 86.7 4 8.6E-05 40.6 9.4 37 643-679 1-37 (189)
111 PRK04972 putative transporter; 85.6 8.4 0.00018 45.4 12.6 131 34-180 386-525 (558)
112 PRK12460 2-keto-3-deoxyglucona 85.5 5.7 0.00012 42.5 10.0 49 96-144 196-244 (312)
113 COG4651 RosB Kef-type K+ trans 85.1 4.3 9.4E-05 42.7 8.6 131 271-409 11-144 (408)
114 PF03956 DUF340: Membrane prot 83.9 10 0.00022 38.0 10.5 49 351-399 58-106 (191)
115 PRK10711 hypothetical protein; 83.6 46 0.001 34.3 15.2 82 347-432 87-168 (231)
116 TIGR00659 conserved hypothetic 83.4 58 0.0013 33.5 16.5 82 347-432 86-167 (226)
117 COG0025 NhaP NhaP-type Na+/H+ 82.8 10 0.00022 43.2 11.4 70 323-394 64-135 (429)
118 PF00999 Na_H_Exchanger: Sodiu 82.5 0.37 8E-06 53.9 -0.3 112 276-391 6-123 (380)
119 PF01171 ATP_bind_3: PP-loop f 82.0 11 0.00023 37.4 10.0 93 643-753 1-106 (182)
120 TIGR00210 gltS sodium--glutama 81.7 30 0.00064 38.9 14.3 166 32-210 222-393 (398)
121 PRK03818 putative transporter; 81.0 45 0.00097 39.3 16.2 105 56-177 403-513 (552)
122 COG1346 LrgB Putative effector 80.9 44 0.00095 34.1 13.6 149 34-203 11-164 (230)
123 PF05145 AmoA: Putative ammoni 78.9 15 0.00033 39.9 10.7 101 32-146 155-257 (318)
124 COG2431 Predicted membrane pro 78.7 41 0.00089 35.2 12.8 78 55-145 108-189 (297)
125 cd01992 PP-ATPase N-terminal d 75.6 18 0.0004 35.5 9.5 37 643-679 1-37 (185)
126 PRK03359 putative electron tra 75.1 8.7 0.00019 40.3 7.2 105 651-778 35-149 (256)
127 cd01993 Alpha_ANH_like_II This 72.1 25 0.00053 34.5 9.5 37 643-679 1-39 (185)
128 PRK09903 putative transporter 71.8 64 0.0014 34.9 13.4 115 51-187 171-286 (314)
129 PF03977 OAD_beta: Na+-transpo 71.3 64 0.0014 34.9 12.3 163 272-442 5-182 (360)
130 PF04172 LrgB: LrgB-like famil 70.1 1.3E+02 0.0029 30.7 15.1 82 347-432 76-157 (215)
131 PRK04288 antiholin-like protei 70.1 1.3E+02 0.0028 31.1 13.9 103 87-206 64-166 (232)
132 COG2086 FixA Electron transfer 69.9 12 0.00027 39.2 6.8 105 651-780 36-150 (260)
133 TIGR03136 malonate_biotin Na+- 69.9 17 0.00037 39.6 7.8 137 319-468 101-237 (399)
134 COG3263 NhaP-type Na+/H+ and K 68.2 51 0.0011 37.0 11.1 73 317-390 59-131 (574)
135 COG3180 AbrB Putative ammonia 66.4 1.6E+02 0.0035 32.3 14.4 121 271-399 11-135 (352)
136 COG0679 Predicted permeases [G 65.2 1.3E+02 0.0028 32.6 14.0 140 292-439 11-152 (311)
137 cd01984 AANH_like Adenine nucl 63.6 8.8 0.00019 32.6 3.6 33 644-677 1-33 (86)
138 COG3329 Predicted permease [Ge 62.1 2E+02 0.0043 30.8 13.5 119 290-414 16-137 (372)
139 COG2985 Predicted permease [Ge 61.3 36 0.00078 38.5 8.6 109 53-177 395-507 (544)
140 PF05684 DUF819: Protein of un 61.2 1E+02 0.0023 34.4 12.5 97 316-417 51-151 (378)
141 TIGR00659 conserved hypothetic 61.1 2E+02 0.0044 29.6 13.3 95 97-206 66-160 (226)
142 TIGR01625 YidE_YbjL_dupl AspT/ 61.0 34 0.00073 33.0 7.4 91 293-385 24-120 (154)
143 PF04172 LrgB: LrgB-like famil 60.6 1.1E+02 0.0024 31.2 11.4 90 102-206 61-150 (215)
144 COG0037 MesJ tRNA(Ile)-lysidin 60.5 55 0.0012 35.0 10.0 57 642-718 22-78 (298)
145 TIGR00930 2a30 K-Cl cotranspor 58.5 4.8E+02 0.01 33.1 39.9 133 458-624 572-709 (953)
146 PRK12342 hypothetical protein; 57.8 26 0.00056 36.8 6.5 29 651-680 34-62 (254)
147 PF05982 DUF897: Domain of unk 56.8 54 0.0012 35.4 8.7 78 56-146 183-263 (327)
148 PRK09903 putative transporter 56.3 2.8E+02 0.006 30.0 14.7 134 292-434 174-310 (314)
149 PRK15475 oxaloacetate decarbox 56.1 26 0.00056 38.2 6.1 113 320-440 131-251 (433)
150 PRK15476 oxaloacetate decarbox 55.6 27 0.00058 38.1 6.1 113 320-440 131-251 (433)
151 PRK15477 oxaloacetate decarbox 55.6 27 0.00058 38.1 6.1 113 320-440 131-251 (433)
152 KOG2310 DNA repair exonuclease 54.3 17 0.00037 41.4 4.6 83 563-654 40-131 (646)
153 TIGR00783 ccs citrate carrier 54.2 93 0.002 34.2 10.1 95 42-146 192-293 (347)
154 PF13593 DUF4137: SBF-like CPA 52.7 2E+02 0.0043 31.3 12.6 92 293-387 7-99 (313)
155 PRK04125 murein hydrolase regu 52.4 1.3E+02 0.0028 28.6 9.5 99 28-136 7-109 (141)
156 COG3371 Predicted membrane pro 51.8 83 0.0018 30.9 8.3 87 21-122 47-133 (181)
157 PRK10660 tilS tRNA(Ile)-lysidi 51.6 59 0.0013 37.1 8.7 61 642-720 16-77 (436)
158 TIGR01109 Na_pump_decarbB sodi 51.0 1E+02 0.0023 33.2 9.6 172 273-450 4-191 (354)
159 PRK06806 fructose-bisphosphate 50.8 71 0.0015 34.1 8.6 112 547-672 16-131 (281)
160 PRK10711 hypothetical protein; 50.7 2.7E+02 0.0058 28.8 12.3 94 97-206 67-161 (231)
161 TIGR00840 b_cpa1 sodium/hydrog 49.8 2.4E+02 0.0052 33.4 13.5 72 322-395 69-149 (559)
162 TIGR02057 PAPS_reductase phosp 49.6 1.2E+02 0.0026 31.2 9.8 33 642-677 26-58 (226)
163 COG3969 Predicted phosphoadeno 47.6 38 0.00083 36.5 5.8 38 641-678 27-65 (407)
164 KOG1650 Predicted K+/H+-antipo 47.5 2.2E+02 0.0048 35.1 13.1 85 95-189 313-399 (769)
165 PRK12737 gatY tagatose-bisphos 46.5 61 0.0013 34.6 7.3 71 547-626 16-86 (284)
166 COG2035 Predicted membrane pro 46.4 3.8E+02 0.0083 28.3 14.7 41 25-67 57-97 (276)
167 TIGR03869 F420-0_ABCperm propo 46.0 4.3E+02 0.0094 28.8 15.8 58 46-104 47-104 (325)
168 TIGR00946 2a69 he Auxin Efflux 44.8 4.3E+02 0.0094 28.5 27.0 136 290-433 181-319 (321)
169 TIGR02039 CysD sulfate adenyly 44.8 66 0.0014 34.5 7.2 36 643-678 21-56 (294)
170 PRK05253 sulfate adenylyltrans 44.4 63 0.0014 34.9 7.0 37 642-678 28-64 (301)
171 PRK12857 fructose-1,6-bisphosp 44.2 68 0.0015 34.3 7.2 71 547-626 16-86 (284)
172 PRK01658 holin-like protein; V 43.9 2.2E+02 0.0048 26.2 9.6 99 28-137 4-107 (122)
173 PF01012 ETF: Electron transfe 43.6 93 0.002 30.0 7.6 28 651-678 14-41 (164)
174 PF02040 ArsB: Arsenical pump 43.0 5.5E+02 0.012 29.2 22.3 37 171-207 117-153 (423)
175 PRK10696 tRNA 2-thiocytidine b 41.5 2.1E+02 0.0046 29.9 10.5 38 641-678 29-68 (258)
176 PRK12563 sulfate adenylyltrans 41.2 59 0.0013 35.1 6.2 35 643-677 39-73 (312)
177 PRK01821 hypothetical protein; 41.1 2E+02 0.0044 26.9 9.0 27 28-54 9-35 (133)
178 COG1646 Predicted phosphate-bi 40.5 69 0.0015 32.8 6.1 60 551-620 16-76 (240)
179 COG1570 XseA Exonuclease VII, 40.3 37 0.0008 38.2 4.6 60 706-771 149-215 (440)
180 PF03547 Mem_trans: Membrane t 40.1 2.3E+02 0.005 31.4 11.2 87 291-378 244-335 (385)
181 COG3748 Predicted membrane pro 39.8 2.6E+02 0.0057 30.1 10.3 40 322-362 226-265 (407)
182 TIGR02359 thiW thiW protein. L 39.6 3.6E+02 0.0079 26.1 12.2 48 55-107 34-84 (160)
183 TIGR01858 tag_bisphos_ald clas 39.0 92 0.002 33.2 7.2 70 548-626 15-84 (282)
184 COG5505 Predicted integral mem 38.7 5.3E+02 0.012 27.8 29.8 86 318-408 272-357 (384)
185 PRK08185 hypothetical protein; 36.7 83 0.0018 33.6 6.4 111 547-672 11-125 (283)
186 cd01713 PAPS_reductase This do 36.0 91 0.002 29.6 6.3 34 643-677 1-34 (173)
187 PRK05274 2-keto-3-deoxyglucona 35.6 3.3E+02 0.0072 29.7 10.9 46 98-143 205-250 (326)
188 PRK09195 gatY tagatose-bisphos 35.6 1.1E+02 0.0023 32.8 7.0 71 547-626 16-86 (284)
189 PF03812 KdgT: 2-keto-3-deoxyg 35.4 1.4E+02 0.0031 32.1 7.8 74 57-143 175-248 (314)
190 KOG1965 Sodium/hydrogen exchan 34.7 1.3E+02 0.0027 35.3 7.7 69 322-394 102-179 (575)
191 cd00947 TBP_aldolase_IIB Tagat 33.9 1.1E+02 0.0024 32.6 6.8 71 547-626 11-81 (276)
192 PF02601 Exonuc_VII_L: Exonucl 32.8 55 0.0012 35.5 4.5 48 706-753 28-85 (319)
193 PRK12738 kbaY tagatose-bisphos 32.5 1.4E+02 0.003 32.0 7.3 70 548-626 17-86 (286)
194 cd01995 ExsB ExsB is a transcr 32.5 1.9E+02 0.004 27.9 7.8 32 643-678 1-32 (169)
195 PRK09196 fructose-1,6-bisphosp 32.1 1.3E+02 0.0029 33.0 7.1 71 547-626 16-87 (347)
196 TIGR01520 FruBisAldo_II_A fruc 32.1 1.8E+02 0.004 32.0 8.2 89 534-626 13-111 (357)
197 PRK01663 C4-dicarboxylate tran 31.9 8.1E+02 0.018 27.9 13.8 36 110-145 66-101 (428)
198 TIGR01521 FruBisAldo_II_B fruc 31.7 1.4E+02 0.0031 32.7 7.3 71 547-626 14-85 (347)
199 TIGR02185 Trep_Strep conserved 31.4 5.4E+02 0.012 25.6 15.9 24 351-374 161-184 (189)
200 PF06181 DUF989: Protein of un 31.3 6.7E+02 0.015 26.8 13.7 40 322-362 229-268 (300)
201 PRK13399 fructose-1,6-bisphosp 31.2 1.5E+02 0.0033 32.6 7.4 71 547-626 16-87 (347)
202 KOG2563 Permease of the major 29.8 9E+02 0.02 27.8 14.8 33 32-64 87-121 (480)
203 PRK06801 hypothetical protein; 29.2 1.7E+02 0.0036 31.4 7.3 112 547-672 16-131 (286)
204 TIGR00793 kdgT 2-keto-3-deoxyg 29.0 3E+02 0.0064 29.6 8.8 74 57-143 175-248 (314)
205 PF01507 PAPS_reduct: Phosphoa 28.7 1.6E+02 0.0034 28.3 6.6 26 643-668 1-26 (174)
206 cd01986 Alpha_ANH_like Adenine 28.4 1.9E+02 0.0042 25.3 6.5 33 644-680 1-33 (103)
207 KOG2722 Predicted membrane pro 27.5 1.1E+02 0.0024 33.5 5.5 93 311-406 40-136 (408)
208 PF01032 FecCD: FecCD transpor 27.4 7.2E+02 0.016 26.9 12.0 63 42-105 32-94 (311)
209 COG1883 OadB Na+-transporting 27.2 29 0.00064 36.4 1.1 132 322-468 83-214 (375)
210 COG3493 CitS Na+/citrate sympo 27.1 7.9E+02 0.017 27.4 11.6 58 323-382 114-171 (438)
211 PF09605 Trep_Strep: Hypotheti 26.9 6.3E+02 0.014 25.0 16.4 127 242-374 38-181 (186)
212 PRK05835 fructose-bisphosphate 26.6 2E+02 0.0043 31.1 7.2 111 547-671 15-130 (307)
213 PF03686 UPF0146: Uncharacteri 26.4 1E+02 0.0022 28.6 4.3 35 554-588 74-108 (127)
214 TIGR00167 cbbA ketose-bisphosp 26.0 2.2E+02 0.0047 30.5 7.4 71 547-626 16-89 (288)
215 cd00946 FBP_aldolase_IIA Class 26.0 2.5E+02 0.0054 30.9 7.9 77 547-626 14-99 (345)
216 PRK09535 btuC corrinoid ABC tr 25.8 9.5E+02 0.021 26.7 16.4 25 46-70 89-113 (366)
217 cd04734 OYE_like_3_FMN Old yel 25.7 4.7E+02 0.01 28.7 10.3 136 595-757 187-323 (343)
218 PRK07998 gatY putative fructos 24.6 2E+02 0.0044 30.7 6.8 69 549-626 18-86 (283)
219 PRK04148 hypothetical protein; 24.5 92 0.002 29.2 3.8 35 554-588 81-115 (134)
220 TIGR03248 galactar-dH20 galact 24.4 2E+02 0.0044 33.2 7.1 111 652-791 173-303 (507)
221 cd01994 Alpha_ANH_like_IV This 24.0 3.9E+02 0.0085 26.7 8.5 22 643-664 1-22 (194)
222 PF02568 ThiI: Thiamine biosyn 23.6 2.4E+02 0.0052 28.4 6.8 36 641-680 3-38 (197)
223 PRK09197 fructose-bisphosphate 23.4 2.8E+02 0.006 30.6 7.6 77 547-626 19-104 (350)
224 PRK10440 iron-enterobactin tra 23.2 1E+03 0.022 26.1 16.7 59 47-106 54-112 (330)
225 KOG4050 Glutamate transporter 22.5 5.1E+02 0.011 25.0 8.1 27 294-320 130-166 (188)
226 COG3264 Small-conductance mech 22.4 1.5E+03 0.033 27.9 19.5 22 561-585 784-805 (835)
227 TIGR02069 cyanophycinase cyano 22.4 1.7E+02 0.0037 30.7 5.7 21 655-675 14-34 (250)
228 PRK00536 speE spermidine synth 22.2 2.4E+02 0.0053 29.7 6.8 28 642-676 74-101 (262)
229 cd01712 ThiI ThiI is required 21.5 6.5E+02 0.014 24.3 9.5 34 643-680 1-34 (177)
230 PF14362 DUF4407: Domain of un 21.3 8.4E+02 0.018 26.0 11.1 84 351-436 19-108 (301)
231 PRK15052 D-tagatose-1,6-bispho 21.2 6.3E+02 0.014 28.5 9.8 107 554-680 16-126 (421)
232 PRK14853 nhaA pH-dependent sod 21.1 7.4E+02 0.016 28.2 10.6 26 314-339 59-84 (423)
233 COG2248 Predicted hydrolase (m 20.8 1E+02 0.0022 32.1 3.4 51 601-670 12-68 (304)
234 PRK10415 tRNA-dihydrouridine s 20.8 7.3E+02 0.016 26.9 10.5 155 562-763 78-238 (321)
235 cd01985 ETF The electron trans 20.6 3.4E+02 0.0074 26.5 7.3 25 651-676 18-42 (181)
236 TIGR02810 agaZ_gatZ D-tagatose 20.5 7.1E+02 0.015 28.0 10.1 107 554-680 15-125 (420)
237 PF06939 DUF1286: Protein of u 20.2 2E+02 0.0043 25.9 4.6 57 12-69 53-110 (114)
238 COG1301 GltP Na+/H+-dicarboxyl 20.2 1.3E+03 0.028 26.2 15.2 37 110-146 67-103 (415)
239 PRK14854 nhaA pH-dependent sod 20.1 6.1E+02 0.013 28.3 9.4 26 316-341 55-80 (383)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.3e-144 Score=1293.16 Aligned_cols=763 Identities=48% Similarity=0.827 Sum_probs=683.9
Q ss_pred ccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHH
Q 003629 10 NTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPI 89 (806)
Q Consensus 10 ~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~ 89 (806)
+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.++.+.+.+||.++.+.
T Consensus 24 ~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~ 103 (832)
T PLN03159 24 MITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMV 103 (832)
T ss_pred CccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999888889999888889
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhc
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSIT 169 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~T 169 (806)
+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|++++++++++++... ........++++|+++|.|
T Consensus 104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~---~~~~~~~~~l~~g~alS~T 180 (832)
T PLN03159 104 LETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVS---RNVHQGTFILFLGVALSVT 180 (832)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887774321 1122234578999999999
Q ss_pred cHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003629 170 AFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVR 249 (806)
Q Consensus 170 s~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 249 (806)
|+||++++|+|+|+++++.||+++++++++|+++|++++++..+...+ ......+|.++..+++++++.+++|
T Consensus 181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-------~~~~~~l~~~l~~~~f~~~~~~v~r 253 (832)
T PLN03159 181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-------STSLASLWVLLSSVAFVLFCFYVVR 253 (832)
T ss_pred hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877665421 2223456677777788888889999
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHH
Q 003629 250 PIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLY 329 (806)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plf 329 (806)
|++.|+.||+ +++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+ +++++++.+|++++++++|+|+|
T Consensus 254 ~~~~~~~r~~-~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlF 331 (832)
T PLN03159 254 PGIWWIIRRT-PEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLF 331 (832)
T ss_pred HHHHHHHHhC-cCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 888888899999999999999999999999999999999999997 78999999999999999999999
Q ss_pred HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH
Q 003629 330 FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND 409 (806)
Q Consensus 330 F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~ 409 (806)
|+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||++++++++++++.|++++
T Consensus 332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~ 411 (832)
T PLN03159 332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD 411 (832)
T ss_pred HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence 99999999998887644566667777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEecCCCChhhHHHHHHhhhcCCC
Q 003629 410 EMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEG 489 (806)
Q Consensus 410 ~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~ 489 (806)
+.|++++++++++|.+++|++.++|+|++|+..|++|++|+ .++++|+|+|+|+|+++++++++||+++++++++
T Consensus 412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~-----~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~ 486 (832)
T PLN03159 412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQR-----SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKR 486 (832)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccccc-----CCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999998 6889999999999999999999999999999999
Q ss_pred CCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHHHhhc-CceEEEEeEeeccCCchHHHHH
Q 003629 490 STLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQL-RRVTVRHSTAISALSTMHEDIF 568 (806)
Q Consensus 490 ~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~~~~dI~ 568 (806)
+|+++|+|||+|+++|+++.+++|+.++++.+..++. ...+|+++++|++|+++ ++|+++++|++|||++||+|||
T Consensus 487 sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~---~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc 563 (832)
T PLN03159 487 SPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRT---QAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVC 563 (832)
T ss_pred CCceEEEEEEEeecCCCccceeeeecccccccccccc---cccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHH
Confidence 9999999999999999999999998765543322211 14579999999999976 5899999999999999999999
Q ss_pred HHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCCCCCCCceEEEEe
Q 003629 569 HVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVF 648 (806)
Q Consensus 569 ~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~~~~~~~~i~v~~ 648 (806)
+.|+|+++++||+||||+|+.||+ ++++++.+|.+|++||++|||||||+||||..+..+... ....+||+++|
T Consensus 564 ~~A~d~~~slIilpfhk~~~~dg~--~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~----~~~~~~v~~~F 637 (832)
T PLN03159 564 NLAEDKRVSLIIIPFHKQQTVDGG--MEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLAS----NQVSHHVAVLF 637 (832)
T ss_pred HHHHhcCCCEEEECCCCccCCCCC--ccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccc----cccceeEEEEe
Confidence 999999999999999999999999 899999999999999999999999999999764322222 45678999999
Q ss_pred cCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCC----cccc-c--cccCCCccccchHHHHHHHHHhc--CCC
Q 003629 649 LGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGG----IAER-A--TSDISTENGISLDEAAVDDFMRK--CDG 719 (806)
Q Consensus 649 ~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~----~~~~-~--~~~~~~~~~~~~d~~~l~~~~~~--~~~ 719 (806)
+|||||||||+||+|||+||++++||+||++.++...... ..+. . .....++.|+++||++++||+++ .++
T Consensus 638 ~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~ 717 (832)
T PLN03159 638 FGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNE 717 (832)
T ss_pred cCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999997541111000 0000 0 11122456888999999999998 468
Q ss_pred cEEEEEEEeCChHHHHHHhcccCC-CcEEEEccCCC-CccccccccccCCCCcccccchhhhhcCCCCCcccEEEEeecc
Q 003629 720 SVECEEKVMGTVKDEVLKIGQSRD-YELVVAGKGRF-PSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQHN 797 (806)
Q Consensus 720 ~v~~~e~~v~~~~~~~~~i~~~~~-~DLiivG~~~~-~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq~~ 797 (806)
++.|.|++|+|++|++..+|++++ |||+||||+|+ +|++++||+| |+||||||+|||+|||+||.+++||||||||.
T Consensus 718 ~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~-w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 718 SIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTD-WSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred ceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccc-cccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 999999999999999999999998 99999999984 6999999999 99999999999999999999999999999996
Q ss_pred cc
Q 003629 798 AA 799 (806)
Q Consensus 798 ~~ 799 (806)
..
T Consensus 797 ~~ 798 (832)
T PLN03159 797 GT 798 (832)
T ss_pred cC
Confidence 43
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-117 Score=1043.37 Aligned_cols=754 Identities=45% Similarity=0.754 Sum_probs=679.7
Q ss_pred CcccCCCCcccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCch
Q 003629 8 SINTSSDGAWQGDNPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWST 87 (806)
Q Consensus 8 ~~~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~ 87 (806)
.++.++.|.|.|+||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|+++.+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc---hhHHHHHHHH
Q 003629 88 PILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVG---YGQFIIFIGV 164 (806)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~l~lg~ 164 (806)
..+++++.+|+.+++|+.|+|+|.+.+||++|++..+|+.++++|++.|+++...+..... ...+. ...+..++..
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKA-DKEDGALFLPFEILFILS 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhcccccc-ccccccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887777643221 11111 1114577888
Q ss_pred HHhhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 003629 165 SLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFM 244 (806)
Q Consensus 165 ~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (806)
+.|.|+||+++++|.|+|++++++||+++++++++|+.+|.++++...+.... ..+.....|.+...+++++++
T Consensus 161 ~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~ 234 (769)
T KOG1650|consen 161 AQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL------KLSPLRSVWDLVLVIGFVLFL 234 (769)
T ss_pred HhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC------CCcchHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999999999999999999888777766542 223556788888889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHc-hhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 003629 245 LIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIG-IHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSG 323 (806)
Q Consensus 245 ~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g-~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~ 323 (806)
.++++|.+.|+.||+ |++++.++.|+..++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.++
T Consensus 235 ~~v~~p~~~wi~kr~-pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~ 313 (769)
T KOG1650|consen 235 FFVVRPLMKWIIKRT-PEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSG 313 (769)
T ss_pred eeehhhhHHHHhhcC-CCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHH
Confidence 999999999999998 99999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred hhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcc
Q 003629 324 LLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGRE 403 (806)
Q Consensus 324 ~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~ 403 (806)
+|+|+||+.+|+++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+++.+++.+.+
T Consensus 314 ~llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~ 390 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLD 390 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 999999999999999999875 77778888888999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEecCCCChhhHHHHHHh
Q 003629 404 KKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTEL 483 (806)
Q Consensus 404 ~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v~~~~~~~~li~l~~~ 483 (806)
.++++++.|++++++++++|.+++|++..+|+|.+++..|++|++++ .+++.++|++.|+|++++++++++++|+
T Consensus 391 ~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~-----~~~~~~Lril~cl~~~~~is~~i~~le~ 465 (769)
T KOG1650|consen 391 RKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQH-----LKPNSELRILTCLHGPENISGIINLLEL 465 (769)
T ss_pred cCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhh-----cCCCCceEEEEEecCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 6889999999999999999999999999
Q ss_pred hhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHHHhhc--CceEEEEeEeeccCC
Q 003629 484 IRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQL--RRVTVRHSTAISALS 561 (806)
Q Consensus 484 ~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~ 561 (806)
+++++++|.+++++|++|+.+|+.|.+++|+.++++... + +...++++..+|+.|++. ..|.++++|+++|+.
T Consensus 466 ~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~-~----~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~ 540 (769)
T KOG1650|consen 466 SSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVE-S----RSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEK 540 (769)
T ss_pred cCCCCCCCcceeeeeeeecccccchhhhhhhhccccccc-c----ccccchhhHHHHHHHHHhcCCcEEEEeehhhCChh
Confidence 998877799999999999999999999999887764221 1 124467999999999984 579999999999999
Q ss_pred chHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCCCCCCC
Q 003629 562 TMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVP 641 (806)
Q Consensus 562 ~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~~~~~~ 641 (806)
+||+|||..|.++++++|++|||++|+.++. +|+.++.+|++|++|+++|||||||+|||| ....... ++....
T Consensus 541 ~m~edic~la~~~~~~liilpfhk~~~~~~~--~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~---~~~~~~ 614 (769)
T KOG1650|consen 541 LMHEDICTLALDKGVSLIILPFHKHWSDGGT--LESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVT---QKRGSS 614 (769)
T ss_pred hchhhhhHHHHhhCCcEEEeehhhhccCCCc--eecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccce---ecccce
Confidence 9999999999999999999999999995556 999999999999999999999999999998 2211111 113467
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHH-Hhc--CC
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDF-MRK--CD 718 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~--~~ 718 (806)
++|++.|.||+||||||+++.||++||++++||+|++++++... .....++++.+|++..+++ +.. .+
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~ 685 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYN---------RKVLVEVGKMLDQEGLEDFVKSTRESN 685 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhc---------ccccchhhhhhhhhHHHHHHHHhhhch
Confidence 89999999999999999999999999999999999997652221 0012467788888888888 533 55
Q ss_pred CcEEEE-EEEeCChHHHHHHhcccCC-CcEEEEccCC-CCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEee
Q 003629 719 GSVECE-EKVMGTVKDEVLKIGQSRD-YELVVAGKGR-FPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQ 795 (806)
Q Consensus 719 ~~v~~~-e~~v~~~~~~~~~i~~~~~-~DLiivG~~~-~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq 795 (806)
.++.|. |+.++|+.||.++++++.+ |||++|||++ .+++.++|+++ |+||||||+|||.|+|+||.++.||||+||
T Consensus 686 ~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~-W~e~pELg~IGd~las~~~~~~~svlvvqq 764 (769)
T KOG1650|consen 686 LDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSE-WSECPELGVIGDLLASSDFSSKVSVLVVQQ 764 (769)
T ss_pred hhhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchh-cccCccccccCccccccccCccceEEEEEe
Confidence 678888 6999999999999999998 9999999999 59999999999 999999999999999999999999999999
Q ss_pred ccc
Q 003629 796 HNA 798 (806)
Q Consensus 796 ~~~ 798 (806)
|..
T Consensus 765 ~~~ 767 (769)
T KOG1650|consen 765 QLY 767 (769)
T ss_pred eec
Confidence 864
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=6.7e-49 Score=458.84 Aligned_cols=487 Identities=20% Similarity=0.283 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003629 28 PLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGL 107 (806)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 107 (806)
..++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.+++ .+.++.++++|++++||.+|+
T Consensus 4 ~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~----------~~~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 4 SHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD----------VESILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC----------HHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999999999997542 356889999999999999999
Q ss_pred cCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCc
Q 003629 108 ELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQ 187 (806)
Q Consensus 108 e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 187 (806)
|+|++.+|+.+|+++.++..++++++++++.++++++..+ ..++++|.+++.||++++.++|+|+|+++++
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~---------~~al~ig~~la~SStaiv~~~L~e~~~l~t~ 144 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW---------QVALLIGLGLALSSTAIAMQAMNERNLMVTQ 144 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 9999999999999999999999999988887777665433 5678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003629 188 VGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLIS----GVAFVAFMLIVVRPIMDWVARQCSSDN 263 (806)
Q Consensus 188 ~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~l~~~~~~~~ 263 (806)
.||.++++++++|+.+|++++++..+...+ ...+.....+..+. .++++++..++.+|+++|+.++.
T Consensus 145 ~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~---- 215 (621)
T PRK03562 145 MGRSAFAILLFQDIAAIPLVAMIPLLAASG-----ASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG---- 215 (621)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 999999999999999999998776554321 11111111111222 22222233445556666554443
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhc
Q 003629 264 DLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR 343 (806)
Q Consensus 264 ~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~ 343 (806)
.+|.+...++.++++++++++.+|+|+++|||++|+++++ .+++++++++++++ .++|+|+||+.+||++|+..+.
T Consensus 216 --~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~ 291 (621)
T PRK03562 216 --LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL 291 (621)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH
Confidence 3677888888899999999999999999999999999997 78899999999999 7999999999999999998876
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHH
Q 003629 344 GVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTT 423 (806)
Q Consensus 344 ~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t 423 (806)
. .|+.++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|
T Consensus 292 ~--~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS 368 (621)
T PRK03562 292 E--NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALS 368 (621)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHH
Confidence 5 3444555666789999999999999999999999999999999999999999999999999999999998755 556
Q ss_pred HhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeec
Q 003629 424 FMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELT 503 (806)
Q Consensus 424 ~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~ 503 (806)
++.+|++..++++..... .++.. +. + ..++.+.|+++|.++. ..+ .+++.+.. ..+++. ++|
T Consensus 369 ~~~tP~l~~~~~~~~~~~-~~~~~-~~---~-~~~~~~~~vII~G~Gr--~G~--~va~~L~~---~g~~vv---vID-- 430 (621)
T PRK03562 369 MAATPLLLVLLDRLEQSR-TEEAR-EA---D-EIDEQQPRVIIAGFGR--FGQ--IVGRLLLS---SGVKMT---VLD-- 430 (621)
T ss_pred HHHHHHHHHhhhHHHHHH-hhhcc-cc---c-ccccccCcEEEEecCh--HHH--HHHHHHHh---CCCCEE---EEE--
Confidence 777777777765532211 11111 11 0 1122356899998776 443 23455542 233333 333
Q ss_pred CCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEE
Q 003629 504 DRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIV 580 (806)
Q Consensus 504 ~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIi 580 (806)
++... .++.++.|.++. ||+....+++++..- .+ .+......+.+.....+|..|++...++-|
T Consensus 431 -~d~~~--v~~~~~~g~~v~----~GDat~~~~L~~agi----~~--A~~vvv~~~d~~~n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 431 -HDPDH--IETLRKFGMKVF----YGDATRMDLLESAGA----AK--AEVLINAIDDPQTSLQLVELVKEHFPHLQI 494 (621)
T ss_pred -CCHHH--HHHHHhcCCeEE----EEeCCCHHHHHhcCC----Cc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeE
Confidence 33332 244555555443 566777777665311 11 111222333345566788888887665433
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=4.2e-48 Score=451.05 Aligned_cols=424 Identities=21% Similarity=0.273 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcC
Q 003629 30 LIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLEL 109 (806)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (806)
++..+.++++++.+++.++||+|+|.++|||++|+++||+++|..+ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3457788899999999999999999999999999999999998643 235688999999999999999999
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchH
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVG 189 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g 189 (806)
|++.+|+.++.....++.++++|+++++++++.++..+ ..++++|+++|.||++++.++++|+|+++++.|
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL---------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRG 147 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcch
Confidence 99999999887777788888889888887766664332 567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003629 190 QTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSS----LISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDL 265 (806)
Q Consensus 190 ~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 265 (806)
|+++++++++|+++|++++++..+.....+ +..+. ....+.++..++++++..++.|++..|+.++. ++.+
T Consensus 148 ~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~- 222 (558)
T PRK10669 148 QIAIGWLIVEDLVMVLTLVLLPAVAGMMEQ---GDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARS-AATG- 222 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC-
Confidence 999999999999999988876654431100 11111 11234455666677777888899999999988 5544
Q ss_pred CchHHHHHHHHHHHHHHHH-HHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcc
Q 003629 266 VDDAYICLTLVGVMVSGFL-TDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRG 344 (806)
Q Consensus 266 ~~e~~~~~~l~~~l~~~~~-a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~ 344 (806)
.+|.++..+++.++++++. ++.+|+|+++|||++|+++++ .+.++++.+...++ .++|+|+||+++|+++|+..+.+
T Consensus 223 ~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~ 300 (558)
T PRK10669 223 SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ 300 (558)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH
Confidence 5778887788888877764 699999999999999999997 67888888877777 78999999999999999988765
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHH
Q 003629 345 VEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTF 424 (806)
Q Consensus 345 ~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~ 424 (806)
.+...+.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++
T Consensus 301 --~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~ 378 (558)
T PRK10669 301 --QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIM 378 (558)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 344445566778899999999999999999999999999999999999999999999999999999999888887777
Q ss_pred hhHHHHHHHhccccccCcccccccccCCCC--CCCCCCCceEEEEecCCCChhhHHHHHHhhh
Q 003629 425 MTTPMVMAIYKPLRRLTPQNQQGLERQSPS--SKNSKDEFKIQACVHGPENVPALINLTELIR 485 (806)
Q Consensus 425 i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~--~~~~~~e~riLv~v~~~~~~~~li~l~~~~~ 485 (806)
++|.+.++..+..++..+.+.+..++..++ ..+.+-+.|+++|.+++ +.+ ++++.+.
T Consensus 379 ~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hiiI~G~G~--~G~--~la~~L~ 437 (558)
T PRK10669 379 LNPVLFTLLERYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGR--VGS--LLGEKLL 437 (558)
T ss_pred HHHHHHHHhhHHHHHhhhccccccccccccccccccccCCCEEEECCCh--HHH--HHHHHHH
Confidence 766666665443333221111101110000 01223357899997776 333 4666665
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=8.6e-48 Score=449.00 Aligned_cols=485 Identities=20% Similarity=0.320 Sum_probs=354.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003629 29 LLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLE 108 (806)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 108 (806)
.++.++.+++.++.+...+++|+|+|+++||+++|+++||+++|.+++ .+.++.++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999999999999999999999999999997642 3457899999999999999999
Q ss_pred CCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCch
Q 003629 109 LDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQV 188 (806)
Q Consensus 109 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 188 (806)
+|++.+|+.+|+++.++..++++|+++++.+.++++..+ ..++++|++++.||++++.++|+|+|+++++.
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~---------~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~ 145 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW---------QAAVVGGIGLAMSSTAMALQLMREKGMNRSES 145 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHHHHHHHHHHHHHHcccccCch
Confidence 999999999999999999999999887776655543322 56788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Q 003629 189 GQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHP-SSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVD 267 (806)
Q Consensus 189 g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~ 267 (806)
||++++..+++|+.++++++++..+...+ ... ......+.++..++++++..++.+|+++|+.+. +.+
T Consensus 146 G~~~l~vll~~Di~~i~ll~l~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 214 (601)
T PRK03659 146 GQLGFSVLLFQDLAVIPALALVPLLAGSA-----DEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS------GVR 214 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCc
Confidence 99999999999999999988776554321 111 111111112222222222334455555554333 246
Q ss_pred hHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhh
Q 003629 268 DAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEA 347 (806)
Q Consensus 268 e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 347 (806)
|.++..++.++++++++++.+|+|+++|||++|+++++ .+++++++++++++ .++|+|+||+.+||++|+..+.+ .
T Consensus 215 e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~ 290 (601)
T PRK03659 215 EVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--H 290 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--h
Confidence 78888888899999999999999999999999999997 78999999999999 79999999999999999988865 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhH
Q 003629 348 WGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTT 427 (806)
Q Consensus 348 ~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~ 427 (806)
|..++.++++.+++|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+
T Consensus 291 ~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~t 369 (601)
T PRK03659 291 LLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTT 369 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHH
Confidence 55566667778899999999999999999999999999999999999999999999999999999999666655 55778
Q ss_pred HHHHHHhccc--cccCcccccccccCCCCCCCCCCCceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCC
Q 003629 428 PMVMAIYKPL--RRLTPQNQQGLERQSPSSKNSKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDR 505 (806)
Q Consensus 428 pl~~~l~~~~--~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r 505 (806)
|++..++++. +++. +.+.+.. ++ ...+.+.|+++|.+++ ..+ ++++.+.. ++.|+. ++| +
T Consensus 370 P~l~~~~~~~~~~~~~---~~~~~~~-~~-~~~~~~~~vII~G~Gr--~G~--~va~~L~~-~g~~vv-----vID---~ 431 (601)
T PRK03659 370 PLLMKLIDKWLARRLN---GPEEEDE-KP-WVEDDKPQVIIVGFGR--FGQ--VIGRLLMA-NKMRIT-----VLE---R 431 (601)
T ss_pred HHHHHHhHHHHHHhhc---ccccccc-cc-ccccccCCEEEecCch--HHH--HHHHHHHh-CCCCEE-----EEE---C
Confidence 8887776652 2221 1101000 00 1122356899987766 433 24444442 123333 333 2
Q ss_pred CcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccE
Q 003629 506 SSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAM 578 (806)
Q Consensus 506 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~l 578 (806)
+... .++.++.|.++. ||+...++++++..- . ..+......+.+.....+|..+++...+.
T Consensus 432 d~~~--v~~~~~~g~~v~----~GDat~~~~L~~agi----~--~A~~vv~~~~d~~~n~~i~~~~r~~~p~~ 492 (601)
T PRK03659 432 DISA--VNLMRKYGYKVY----YGDATQLELLRAAGA----E--KAEAIVITCNEPEDTMKIVELCQQHFPHL 492 (601)
T ss_pred CHHH--HHHHHhCCCeEE----EeeCCCHHHHHhcCC----c--cCCEEEEEeCCHHHHHHHHHHHHHHCCCC
Confidence 2222 133444554433 455666666654311 1 11112222232344445666666665553
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=401.66 Aligned_cols=381 Identities=31% Similarity=0.539 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003629 28 PLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGL 107 (806)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 107 (806)
...+.++.++++++.+.++++||+|+|.++||+++|+++||..++.. .+..+.++.++++|++++||.+|+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999544432 345788999999999999999999
Q ss_pred cCCchHHHhccch-hHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccC
Q 003629 108 ELDLSSIRQNGKS-AFKIALAGITLPFLLGAGVSLF-LQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLT 185 (806)
Q Consensus 108 e~d~~~l~~~~~~-~~~ia~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 185 (806)
|+|++++||++|+ +...+..++..|+.++....+. ++..+ ..++++|.+++.||.++++++++|+|+++
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~---------~~al~lg~~l~~sS~~i~~~iL~e~~~~~ 146 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL---------IAALFLGAALALSSTAIVLKILMELGLLK 146 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999 8888888888888887654443 43332 55899999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003629 186 TQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDL 265 (806)
Q Consensus 186 s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 265 (806)
++.|++++++++++|+.++++++++..+...+ ...............++.++..+..+++.+|+.|+. ++..
T Consensus 147 ~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g------~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~--~~~~ 218 (397)
T COG0475 147 TREGQLILGALVFDDIAAILLLAIVPALAGGG------SGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRV--AKTE 218 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhcc
Confidence 99999999999999999999999888876542 122222344455555666666665677788888877 2224
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChh-HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcc
Q 003629 266 VDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFV-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRG 344 (806)
Q Consensus 266 ~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~ 344 (806)
.+|..+..++++++++++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|+..+..
T Consensus 219 ~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~ 297 (397)
T COG0475 219 SSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE 297 (397)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc
Confidence 5788899999999999999999999999999999999997 5556 7999999999777999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHH
Q 003629 345 VEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTF 424 (806)
Q Consensus 345 ~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~ 424 (806)
.+..+.+++.+..++|.+++++.++..|++.|++...|+.+.++|+++++.++.+.. +.++++.++..+++++++|.
T Consensus 298 --~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~ 374 (397)
T COG0475 298 --NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTP 374 (397)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHH
Confidence 445567778888999999999999999999999999999999999999999988876 57888888888777777777
Q ss_pred hhHHHHHHHhcccc
Q 003629 425 MTTPMVMAIYKPLR 438 (806)
Q Consensus 425 i~~pl~~~l~~~~~ 438 (806)
+.+.+.+.++++..
T Consensus 375 i~~~~~~~~~~~~~ 388 (397)
T COG0475 375 ILPLLTPILLKRLL 388 (397)
T ss_pred HHHHHHHHHHHHhh
Confidence 76666666655433
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1e-39 Score=380.33 Aligned_cols=386 Identities=19% Similarity=0.174 Sum_probs=316.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 003629 27 FPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVG 106 (806)
Q Consensus 27 l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 106 (806)
+..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.+.. ++.+..+.++++|+++++|..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCc
Confidence 34678899999999999999999999999999999999999999986431 2346789999999999999999
Q ss_pred hcCCchHHHhccchhHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccc-c
Q 003629 107 LELDLSSIRQNGKSAFKIALAGITLPFLLGAGVS-LFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKL-L 184 (806)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l 184 (806)
+|+|++.+|+++++++.+++.++++|++++..++ ++++.++ ..++++|+++++||++++.++++|+|+ +
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~---------~~alllgai~s~Td~a~v~~iL~~~~l~l 146 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW---------LEGLLLGAIVGSTDAAAVFSLLRGKGLNL 146 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHHhhhhccCchHHHHHHHhccCCCc
Confidence 9999999999999999999999999988755444 3443322 678999999999999999999999995 7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003629 185 TTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDND 264 (806)
Q Consensus 185 ~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 264 (806)
+++++++++++|.+||.++++++.++..+...+ ........++.++..+++.++.++++++++.|+.+|. +.
T Consensus 147 ~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~-~~-- 218 (562)
T PRK05326 147 KERVASTLEIESGSNDPMAVFLTITLIELITGG-----ETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRI-AL-- 218 (562)
T ss_pred chhHHhHhhhhhhcccHHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC--
Confidence 999999999999999999999888776655432 1111122334455566677777888899999999987 32
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcc
Q 003629 265 LVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRG 344 (806)
Q Consensus 265 ~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~ 344 (806)
..++.+..++++++++++++++.+|.|+++|+|++|++++|.++..+...+++.+...+++.|+||+++|+.+|++.+.+
T Consensus 219 ~~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~ 298 (562)
T PRK05326 219 PAEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD 298 (562)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 12456778889999999999999999999999999999998654544555566555588999999999999999988764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH-HHHHHHHHHHHHHH
Q 003629 345 VEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND-EMFAILVVMALFTT 423 (806)
Q Consensus 345 ~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~-~~~~~lvl~v~v~t 423 (806)
..+..+++.+++.+++|+++++++.+.+++++||+..+|| .++||.++++++..+...++.+. ..|+++.+++++++
T Consensus 299 -~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~ 376 (562)
T PRK05326 299 -IALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSL 376 (562)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHH
Confidence 2333333444567889999999999999999999999999 48999999999999999898864 56788878888888
Q ss_pred HhhHHHHHHHhccccc
Q 003629 424 FMTTPMVMAIYKPLRR 439 (806)
Q Consensus 424 ~i~~pl~~~l~~~~~~ 439 (806)
++.++.+.++.++.+-
T Consensus 377 ~i~g~tl~~~a~~l~l 392 (562)
T PRK05326 377 LLQGTTLPWAARKLGV 392 (562)
T ss_pred HHHHhhHHHHHHHcCC
Confidence 8888888877765444
No 8
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=296.48 Aligned_cols=382 Identities=23% Similarity=0.344 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCc
Q 003629 32 IQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDL 111 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 111 (806)
-.+..-+.++++++.+..|+|+|+.+||++||++.||..-|... +......++++|++++||-+|++.++
T Consensus 9 ~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgvGLhfsl 78 (408)
T COG4651 9 TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGVGLHFSL 78 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhcchheeH
Confidence 34555677889999999999999999999999999998777543 23455689999999999999999999
Q ss_pred hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHH
Q 003629 112 SSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQT 191 (806)
Q Consensus 112 ~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l 191 (806)
+++...+.-+..-++.++.+....+.++...+++++ ...+.+|.++|..|..|..|-|+|+++.+++.||+
T Consensus 79 kdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~---------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~i 149 (408)
T COG4651 79 KDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF---------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRI 149 (408)
T ss_pred HHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc---------ccceeeeehhhhHHHHHHHHHHHHhccccccCceE
Confidence 999876665655666666666666666666665543 34588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHH
Q 003629 192 AMAAAAFNDIAAWILLALAVSLAGKASG-TESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAY 270 (806)
Q Consensus 192 ~l~~a~i~D~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~ 270 (806)
+++.-+++|+..++.+.+...+++.-.. +.+..+-.....+.+.+...|..++.++.|++..|+..+....| .+|.+
T Consensus 150 AiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG--srElf 227 (408)
T COG4651 150 AIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG--SRELF 227 (408)
T ss_pred EEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHHHH
Confidence 9999999999999888777666543211 11111111123345568889999999999999999999973334 48999
Q ss_pred HHHHHHHHHHHHH-HHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHH
Q 003629 271 ICLTLVGVMVSGF-LTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWG 349 (806)
Q Consensus 271 ~~~~l~~~l~~~~-~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 349 (806)
...+++.+++.++ .++.+|+|+.+|||++|+++.+ ++..++..+..-++ .+.|.-+||+.+||..|+..+.+ +.+.
T Consensus 228 ~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~-~pl~ 304 (408)
T COG4651 228 TLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQ-QPLA 304 (408)
T ss_pred HHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhc-chHH
Confidence 9999999998876 5778999999999999999996 88888888888888 89999999999999999988876 2343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHH
Q 003629 350 LLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPM 429 (806)
Q Consensus 350 ~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl 429 (806)
+...+.+.+.+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++ .-.-++++..+.+++..|+
T Consensus 305 -vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~-~gr~LvlagailsIl~nPl 382 (408)
T COG4651 305 -VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPE-AGRDLVLAGAILSILLNPL 382 (408)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcH-HHHHHHHHHHHHHHHHhHH
Confidence 45566677889999999999999999999999999999999999999999999999984 4555557777778888998
Q ss_pred HHHHhccccc
Q 003629 430 VMAIYKPLRR 439 (806)
Q Consensus 430 ~~~l~~~~~~ 439 (806)
.....++.++
T Consensus 383 lf~~~dr~~~ 392 (408)
T COG4651 383 LFALLDRYQR 392 (408)
T ss_pred HHHHHHHHhh
Confidence 8776665444
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=7.2e-35 Score=310.31 Aligned_cols=271 Identities=28% Similarity=0.478 Sum_probs=229.5
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhcc
Q 003629 39 LTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNG 118 (806)
Q Consensus 39 ~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 118 (806)
+++.+.+.++||+|+|.+++++++|+++||+.+|.+++ .+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46788899999999999999999999999999886542 35789999999999999999999999999999
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHHHHH
Q 003629 119 KSAFKIALAGITLP-FLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAA 197 (806)
Q Consensus 119 ~~~~~ia~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~ 197 (806)
|++..+++.++++| +++++.++++++.++ ..++++|++++.||++++.++++|+|+.+++.|++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~ 142 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLAL---------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILL 142 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHH
Confidence 99999999999999 666766666654332 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHH
Q 003629 198 FNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVG 277 (806)
Q Consensus 198 i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~ 277 (806)
+||+++++++.+....... .+.+.....+.+...+++.++.+++.++...|+.|+. ++++. .|.+...++.+
T Consensus 143 ~~D~~~i~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~ 214 (273)
T TIGR00932 143 FQDIAVVPLLALLPLLATS------ASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLT-AELRP-SELFTAGSLLL 214 (273)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC-chHHHHHHHHH
Confidence 9999999999887765432 1122222334444455555566677888899999887 54433 57778888999
Q ss_pred HHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccc
Q 003629 278 VMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTD 338 (806)
Q Consensus 278 ~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~id 338 (806)
++.+++++|.+|.|+.+|||++|+++++ .+.++++.++++++. ++|.|+||+++|+++|
T Consensus 215 ~~~~~~la~~~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 215 MFGSAYFADLLGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 9999999999999999999999999998 555788999999997 9999999999999987
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.1e-39 Score=361.04 Aligned_cols=374 Identities=29% Similarity=0.522 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 003629 36 LVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIR 115 (806)
Q Consensus 36 lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 115 (806)
++++.+.+.+.++||+++|.+++|+++|+++||..++..++ + ....+.++++|+.++||.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34455667777899999999999999999999998884332 1 35678899999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHH-HHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHH
Q 003629 116 QNGKSAFKIALAGITLPFLL-GAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMA 194 (806)
Q Consensus 116 ~~~~~~~~ia~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~ 194 (806)
|++|+++.+++.++++|+++ ++.+.+++. .. +++. ..++++|.+++.||++++.++++|.+..+++.++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~-~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~ 147 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-IL----GLSW-AEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLS 147 (380)
T ss_dssp ----------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-cc----hhhh-HHHhhhHHhhhcccccchhhhhhhhhcccccccchhhh
Confidence 99999999999999999988 666554321 11 2222 56899999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHH
Q 003629 195 AAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLT 274 (806)
Q Consensus 195 ~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~ 274 (806)
++++||+++++++.+.......+ ...+.......++.. ++.+.+.+....|+.++..+..++.++.+..++
T Consensus 148 ~~~i~d~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (380)
T PF00999_consen 148 ESVINDIIAIILLSILISLAQAS-----GQSSLGQLLLSFLWI----ILIGIVIGLLFGWLLRRLIRRASPSSEIFILLV 218 (380)
T ss_dssp TTTTTTTTTTTTT-------------------------------------------------------------------
T ss_pred hchhhccchhhhhhhhhhhhccc-----ccccccchhcchhhh----hhhheeeecccchHHHHhhhhccccchhhHHHH
Confidence 99999999999888777665211 111111112222222 333333344444444443111124466778899
Q ss_pred HHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhc-chhhHHHHHH
Q 003629 275 LVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR-GVEAWGLLVL 353 (806)
Q Consensus 275 l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~-~~~~~~~~~~ 353 (806)
++.++.+++++|.+|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. +...|...+.
T Consensus 219 l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~ 297 (380)
T PF00999_consen 219 LALILLLYGLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLL 297 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhccccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHH
Confidence 9999999999999999999999999999995 7777889999999977999999999999999998884 2235666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003629 354 VISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAI 433 (806)
Q Consensus 354 ~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l 433 (806)
+++..+++|++++++.+++.|+++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+
T Consensus 298 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l 377 (380)
T PF00999_consen 298 LLIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPL 377 (380)
T ss_dssp -------------------------HHHHTTTTSS--HHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHH
Confidence 67777799999999999999999999999999999999999999999999999999999999888888887777777655
Q ss_pred h
Q 003629 434 Y 434 (806)
Q Consensus 434 ~ 434 (806)
.
T Consensus 378 ~ 378 (380)
T PF00999_consen 378 L 378 (380)
T ss_dssp -
T ss_pred h
Confidence 4
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=1.1e-27 Score=275.33 Aligned_cols=373 Identities=13% Similarity=0.183 Sum_probs=264.8
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHhh-hccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHH
Q 003629 17 WQGDNPLNFAFPLLIIQTALVLLTSHCLAFLI-KPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVAS 95 (806)
Q Consensus 17 ~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~-~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~ 95 (806)
|..-++-...+. +..++..+++..++..++ +|+.+|..+.++++|+++||.++|..++.. +.......++ +++
T Consensus 3 w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-Ite 76 (810)
T TIGR00844 3 WEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISR 76 (810)
T ss_pred cccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHH
Confidence 554444443332 333444444444444444 499999999999999999999988654320 0001223344 999
Q ss_pred HHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHH
Q 003629 96 IGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLA 175 (806)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~ 175 (806)
+++++.+|.+|++++.+.+|+.|+.++.+++.++.+++++++++++++...+ + +..++++|+++++|++....
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL----~---~~~ALLLGAILAPTDPVLAs 149 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL----N---FPASLLMGACITATDPVLAQ 149 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----C---HHHHHHHHhhhcCCcHHHHH
Confidence 9999999999999999999999999999999999999998888777663222 1 26789999999999998777
Q ss_pred HHHH---hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 176 RILA---DLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIM 252 (806)
Q Consensus 176 ~iL~---el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 252 (806)
.+++ ..+ ++.++..++.+++.+||.++++++.+...+..... . +...........++..++++++++++++.+.
T Consensus 150 sV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~-~-g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~ 226 (810)
T TIGR00844 150 SVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPG-R-GGEIVKDWICVTILWECIFGSILGCIIGYCG 226 (810)
T ss_pred HHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccC-c-cccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 234 68899999999999999999987766554443210 0 0111101122334445555566666666666
Q ss_pred HHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHH-HHHHHHHHHHhhhhHHHHH
Q 003629 253 DWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVR-LMKKIQDFVSGLLLPLYFA 331 (806)
Q Consensus 253 ~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~-l~~~l~~~~~~~~~plfF~ 331 (806)
.|+.++.........+.++.+.++++++++.+++.+|.++++++|++|+++.+......+ -...+......++..++|+
T Consensus 227 ~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFV 306 (810)
T TIGR00844 227 RKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFV 306 (810)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHH
Confidence 666655411111234556777888888888999999999999999999999975432222 2334555667888999999
Q ss_pred Hhccccchhhhcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhcchhHHHHHHHhhcccC
Q 003629 332 SSGLKTDVAKIRG----VEAWGLLVLVISTACAGKILGTFVMALLC--MIPVRESLALGVLMNTKGLVELIVLNIGREKK 405 (806)
Q Consensus 332 ~~G~~idl~~l~~----~~~~~~~~~~i~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ 405 (806)
++|+.+....+.. ...|..+++.+++.++.|+.++++...+. ..+++|++++|| +++||..++.++.++++.+
T Consensus 307 lLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~ 385 (810)
T TIGR00844 307 YLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQL 385 (810)
T ss_pred HHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhh
Confidence 9999998776642 12466666677777888988888765443 478999999999 8999999999998887664
Q ss_pred C
Q 003629 406 V 406 (806)
Q Consensus 406 i 406 (806)
.
T Consensus 386 ~ 386 (810)
T TIGR00844 386 E 386 (810)
T ss_pred h
Confidence 4
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=8.2e-27 Score=268.31 Aligned_cols=334 Identities=18% Similarity=0.137 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 003629 35 ALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSI 114 (806)
Q Consensus 35 ~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 114 (806)
.++++++.....+++|+++|.+++++++|+++||..++... +.+ -+.+..+++..++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~----~~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLD----REIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCC----HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 44555666778899999999999999999999986543211 111 1234558999999999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHH
Q 003629 115 RQNGKSAFKIALAGITLPFLLGAGVSLFL-QKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAM 193 (806)
Q Consensus 115 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l 193 (806)
|++++.+..+++.++++|++++..+.+++ +.+ +..++++|+++|+||++++.+++++.+ +++++.+++.
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~---------~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~ 142 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILGIP---------LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLE 142 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHh
Confidence 99999999999999999988766555543 222 267899999999999999999999988 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHH
Q 003629 194 AAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICL 273 (806)
Q Consensus 194 ~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~ 273 (806)
++|++||..+++++.+...+..+. +..+.....+.++..++.+++.++++..+..|+.|+. .+ + ......+
T Consensus 143 gESllND~~alvlf~~~~~~~~~~-----~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~-~~-~--~~~~~~l 213 (525)
T TIGR00831 143 GESLLNDGAALVVFAIAVAVALGK-----GVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK-ID-D--PLVEIAL 213 (525)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-c--cHHHHHH
Confidence 999999999999998877665421 1122223333444444555666666677777777654 22 2 2344678
Q ss_pred HHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh------hHHHHHHHHHHHHhhhhHHHHHHhccccchhhhc--c-
Q 003629 274 TLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF------VVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIR--G- 344 (806)
Q Consensus 274 ~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~------~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~--~- 344 (806)
++++++++++++|.+|.|+++++|++|+++++..+. .+...+.++.....++.+++|+++|+++...... .
T Consensus 214 ~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~ 293 (525)
T TIGR00831 214 TILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKE 293 (525)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 888999999999999999999999999999874332 1222345555668899999999999998642111 0
Q ss_pred hh-h-----HHH---HHHHHHHHHHHHHHHHHHHH--HH-----hCCChHHHHHHHHHhhcchhHHHHHHH
Q 003629 345 VE-A-----WGL---LVLVISTACAGKILGTFVMA--LL-----CMIPVRESLALGVLMNTKGLVELIVLN 399 (806)
Q Consensus 345 ~~-~-----~~~---~~~~i~~~~~~K~~~~~l~~--~~-----~~~~~~~~~~lgl~m~~rG~v~l~~~~ 399 (806)
.. . +.. .+++....+..|++.++... ++ .+++||+.+.++| .+.||.++++++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 294 ILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHH
Confidence 00 0 100 11111222345554433221 11 2578999999999 6999999998775
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.9e-25 Score=244.19 Aligned_cols=351 Identities=19% Similarity=0.171 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003629 29 LLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLE 108 (806)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 108 (806)
..+++..+++.++.+...+.+|+..|.+..+++.|++.||.+++.... +....-+.+..+.+..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 457788889999999999999999999999999999999988876543 111223334499999999999999
Q ss_pred CCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCch
Q 003629 109 LDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQV 188 (806)
Q Consensus 109 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 188 (806)
+|.+.+||+++....+++.+++++.+....+.+++.. +++. ..++.+|+++|+|++.++.+++++.+ .++++
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~------~i~~-~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri 149 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP------GIPL-AAAFLLGAILSPTDPVAVSPIFKRVR-VPKRI 149 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC------ChhH-HHHHHHhHHhcCCCchhhHHHHhcCC-CCHHH
Confidence 9999999999999999999999988777666666622 2222 68899999999999999999999977 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCch
Q 003629 189 GQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDD 268 (806)
Q Consensus 189 g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e 268 (806)
.++..++|++||..+++++.+...+...+ +..+.......++..+..++.++++++.+..|+.++....+.....
T Consensus 150 ~~iL~gESl~ND~~giv~f~~~l~~~~~~-----~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~ 224 (429)
T COG0025 150 RTILEGESLLNDGVGIVLFKVALAALLGT-----GAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPL 224 (429)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcc-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchH
Confidence 99999999999999999998888776632 1222223344455555555666666666666666665111111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcC-----CCCChh-HHHHHHHHHHHHhhhhHHHHHHhccccchhhh
Q 003629 269 AYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIP-----KGGDFV-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKI 342 (806)
Q Consensus 269 ~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~-----~~~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l 342 (806)
....+.+...+..+.++|.+|.|++++++++|+... +..+.. +...+.++.....++.-+.|++.|++++...+
T Consensus 225 ~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~ 304 (429)
T COG0025 225 LETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL 304 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 457889999999999999999999999999998773 112222 33444566666889999999999999999887
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHhhcchhHHHHHHHhhc
Q 003629 343 RGVEAWGLLVLVISTACAGKILGTFVMALLCM------IPVRESLALGVLMNTKGLVELIVLNIGR 402 (806)
Q Consensus 343 ~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~------~~~~~~~~lgl~m~~rG~v~l~~~~~~~ 402 (806)
.. ..+...++.++..+++|++++++..+..+ .+++|+++++| -++||.++++++....
T Consensus 305 ~~-~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 305 LA-LGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred HH-hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHch
Confidence 65 24666777778889999999999998853 79999999999 6999999998886543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.93 E-value=4.8e-23 Score=236.77 Aligned_cols=384 Identities=14% Similarity=0.119 Sum_probs=259.7
Q ss_pred HHHHHHHHHHHHHHHHhh-hcc-CCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003629 31 IIQTALVLLTSHCLAFLI-KPL-RQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLE 108 (806)
Q Consensus 31 l~~i~lil~~~~~~~~l~-~rl-~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 108 (806)
+.-..++..++.+...+. ++. ++|..+..++.|+++|+...+... .+... -.-+.+-.+.+..++|..|++
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~~~-l~~~lf~~~~LPpIlFe~g~~ 83 (559)
T TIGR00840 11 FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDPPT-LDSSYFFLYLLPPIVLDAGYF 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------CccCC-cCHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444444 344 599999999999999986433210 00000 112456667888999999999
Q ss_pred CCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCc
Q 003629 109 LDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVD-GESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQ 187 (806)
Q Consensus 109 ~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 187 (806)
+|.+.++++.+.++.+|+.+++++.++.....+++..... +..+.+. ..++++|+++|+|+|.++..++++.+ .+.+
T Consensus 84 l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~-~~allfGAiiSaTDPVAVlai~~~~~-v~~~ 161 (559)
T TIGR00840 84 MPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGL-LDNLLFGSLISAVDPVAVLAVFEEYH-VNEK 161 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCH-HHHHHHhHHhcCCchHHHHHHHHhcC-CCcc
Confidence 9999999999999999999999987766555554322110 0012233 67899999999999999999999999 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003629 188 VGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSL---ISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDND 264 (806)
Q Consensus 188 ~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~ 264 (806)
+-.++.++|++||.++++++.++..+...+. +..+.. .....+....+.+++++++++.+..++.|+. ...+
T Consensus 162 L~~ll~gESllNDavaIVLf~~~~~~~~~~~----~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~-~~~~ 236 (559)
T TIGR00840 162 LYIIIFGESLLNDAVTVVLYNTFIKFHKTAD----EPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFT-HHIR 236 (559)
T ss_pred hhhheehhhhhhccHHHHHHHHHHHHHhcCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 9999999999999999999987776654210 111111 1112222222335666777777788888887 3222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCC-----CChhHHHHHHHHHHHHhhhhHHHHHHhccccch
Q 003629 265 LVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-----GDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDV 339 (806)
Q Consensus 265 ~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~-----~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl 339 (806)
.....+++++++++++++|.+|.|++++++++|+++.+. .+..+.-.+.+......+...+.|+++|+.+-.
T Consensus 237 ---~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~ 313 (559)
T TIGR00840 237 ---QIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVT 313 (559)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334667888888999999999999999999999998642 222233334455555788899999999997632
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHH
Q 003629 340 AKIRGVEAWGLLVLVISTACAGKILGTFVMALL------CMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFA 413 (806)
Q Consensus 340 ~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~ 413 (806)
.. . ...|..+++.+++.+++|+++++..++. .+++++|.+.++| .+.||.++++++....+.+.-..+.+.
T Consensus 314 ~~-~-~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~ 390 (559)
T TIGR00840 314 EN-H-EWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFV 390 (559)
T ss_pred ch-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHH
Confidence 21 1 1245555555566678999998877654 3579999999999 699999999888654433333333333
Q ss_pred HHH-----HHHHHHHHhhHHHHHHHh
Q 003629 414 ILV-----VMALFTTFMTTPMVMAIY 434 (806)
Q Consensus 414 ~lv-----l~v~v~t~i~~pl~~~l~ 434 (806)
.++ +++++....++|+++++.
T Consensus 391 ~~t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 391 TTTLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred HHHHeeehHHHHHHHhhHHHHHHHhC
Confidence 333 334444444566666553
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1e-23 Score=221.41 Aligned_cols=380 Identities=17% Similarity=0.179 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 003629 27 FPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVG 106 (806)
Q Consensus 27 l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 106 (806)
...+++.-.+++.++.+.+.+..|+|.|..+-++..|++.|--++|.++- ++.+....++++++++++|..|
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCc
Confidence 33445555577788889999999999999999999999999999987642 3467788899999999999999
Q ss_pred hcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccC
Q 003629 107 LELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFL-QKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLT 185 (806)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 185 (806)
+..+++.+|...++++.++..+++++-.+..+++.|+ +.++ ..++++|+++.+|+.+.+..+|.+++ +|
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~w---------le~~LiGAiVgSTDAAAVF~lL~~~n-l~ 146 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDW---------LEGLLIGAIVGSTDAAAVFSLLGGKN-LN 146 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHH---------HHHHHHHHhhccccHHHHHHHHccCC-hh
Confidence 9999999999999999999999999876665555554 4433 67899999999999999999999888 79
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003629 186 TQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDL 265 (806)
Q Consensus 186 s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 265 (806)
.+.+.+..-+|--||.+++++..-++.+...+ .++-....+..++...+++++.++..+.+..|+++|. .-+
T Consensus 147 erv~stLEiESGtNDPmAvfLTitlieli~~g-----et~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~-nLd-- 218 (574)
T COG3263 147 ERVASTLEIESGSNDPMAVFLTITLIELIAGG-----ETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRI-NLD-- 218 (574)
T ss_pred hhhhhhEEeecCCCCceeeehhHHHHHHHhcc-----ccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh-ccc--
Confidence 99999999999999999998765555555432 1111122333466778888899999999999999998 322
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh-hHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcc
Q 003629 266 VDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF-VVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRG 344 (806)
Q Consensus 266 ~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~-~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~ 344 (806)
+..|..++++..++++.+++.+|-|++++.+++|+++.|.+-. ++.+.+..+.+ .++..-+.|...|+.++++.+..
T Consensus 219 -~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~ 296 (574)
T COG3263 219 -SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLP 296 (574)
T ss_pred -cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhH
Confidence 5567888999999999999999999999999999999984432 35566666777 78888899999999999999876
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHH-HHHHHHHHHHHH
Q 003629 345 VEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEM-FAILVVMALFTT 423 (806)
Q Consensus 345 ~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~-~~~lvl~v~v~t 423 (806)
...+.+++.+...+++|++++|+...-+++++||.++++| -+-||.+.++++....-.|.-+.+. |++..+.++++-
T Consensus 297 -iavPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSl 374 (574)
T COG3263 297 -IAIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSL 374 (574)
T ss_pred -hhHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHH
Confidence 4566677777888999999999999999999999999999 6999999999998888777766654 455444444444
Q ss_pred HhhHHHHHHHhcc
Q 003629 424 FMTTPMVMAIYKP 436 (806)
Q Consensus 424 ~i~~pl~~~l~~~ 436 (806)
.+.+..+.+..++
T Consensus 375 liQG~tl~~~a~~ 387 (574)
T COG3263 375 LIQGSTLPWAAKK 387 (574)
T ss_pred HHccCcchHHHHh
Confidence 4445555554443
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.78 E-value=7.6e-18 Score=182.61 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=177.4
Q ss_pred ceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHH-HH
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVA-SL 540 (806)
Q Consensus 462 ~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~-af 540 (806)
.|||+|++..+.....++.+-.++ +..+.+++++|+++-.....+.......+.+...... ...++.++ ..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~ 75 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA--QRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVI------SQRTAWIREQA 75 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH--HhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHH------HHHHHHHHHHH
Confidence 369999999999999888888887 3456788999988632211111000000000000000 00111122 22
Q ss_pred HHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 541 EAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 541 ~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
+.+ +..+++++...... .+.++.|++.|+++++||||+|+|++.+..+. .+|++.+++++++||||.++
T Consensus 76 ~~~-~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~--------~~gs~~~~l~~~~~~pvlvv 144 (305)
T PRK11175 76 KPY-LDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV--------IFTPTDWHLLRKCPCPVLMV 144 (305)
T ss_pred HHH-hhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh--------ccChhHHHHHhcCCCCEEEe
Confidence 222 22456665544332 57899999999999999999999998666655 68999999999999999987
Q ss_pred EcCCCCCCCCccccCCCCCCCceEEEEecCCccH-------HHHHHHHHHHhhCC-CeEEEEEEeeecCCCCccCCcccc
Q 003629 621 VDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDD-------RRALDLGGRMAENS-GVKVTLVRFVHQASGAATGGIAER 692 (806)
Q Consensus 621 vdrg~~~~~~~~~~~~~~~~~~~i~v~~~Gg~dd-------reaL~~a~~ma~~~-~~~ltvv~~~~~~~~~~~~~~~~~ 692 (806)
-++ . .....+|+++.+|++.+ +.|+++|.++|+.. +++++++|+.+...... . .+.
T Consensus 145 ~~~--~-----------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~-~--~~~ 208 (305)
T PRK11175 145 KDQ--D-----------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI-A--IEL 208 (305)
T ss_pred ccc--c-----------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc-c--ccc
Confidence 322 1 11246899999998753 67999999999987 99999999986431010 0 000
Q ss_pred ccccCCCccc---cchHHHHHHHHHhcCCCcEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCC
Q 003629 693 ATSDISTENG---ISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPEN 769 (806)
Q Consensus 693 ~~~~~~~~~~---~~~d~~~l~~~~~~~~~~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~ 769 (806)
.... .++.+ ++..++.++++.++.+.+.........+..+.+....+..++||+|||+++ .+|+.+ |
T Consensus 209 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~-----~~~~~~-~--- 278 (305)
T PRK11175 209 PEFD-PSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVG-----RTGLSA-A--- 278 (305)
T ss_pred cccc-hhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCc-----cCCCcc-e---
Confidence 0000 01111 111223445554443222211222235566655444444459999999998 667766 4
Q ss_pred cccccchhhhhcCCCCCcccEEEEee
Q 003629 770 VGLGPIGNILASSDHGILASVLVIQQ 795 (806)
Q Consensus 770 ~elG~igd~las~d~~~~~svlvvqq 795 (806)
-+|...+-++.. .+|+||||..
T Consensus 279 -llGS~a~~v~~~---~~~pVLvv~~ 300 (305)
T PRK11175 279 -FLGNTAEHVIDH---LNCDLLAIKP 300 (305)
T ss_pred -eecchHHHHHhc---CCCCEEEEcC
Confidence 589999999998 8999999974
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.7e-16 Score=175.50 Aligned_cols=390 Identities=15% Similarity=0.132 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC---CChhHHHHHHHhhcCcccCCCchhh-----hcccCCCCchHHHHHHHHHHHHH
Q 003629 29 LLIIQTALVLLTSHCLAFLIKPLR---QPKVIAEILGGILLGPSALGRNKEY-----LHLMFPSWSTPILESVASIGLLF 100 (806)
Q Consensus 29 ~~l~~i~lil~~~~~~~~l~~rl~---~P~iv~~ilaGillGP~~lg~~~~~-----~~~lfp~~~~~~l~~l~~lgl~~ 100 (806)
.-++-++++++++.+.++++++-| +|.-+.-++-|+++|-......... ....|.+ +.+-.+-+--
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPp 108 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPP 108 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhch
Confidence 345566677778889999999988 9999999999999985432211110 0011111 1233444556
Q ss_pred HHHHHhhcCCchHHHhccchhHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHH
Q 003629 101 FLFLVGLELDLSSIRQNGKSAFKIALAGITLPFL-LGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILA 179 (806)
Q Consensus 101 llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 179 (806)
+.|..|.+++-+.++++......+++.|..++.. +|.++.++..... ..++++ ..++++|+++|.|+|..+..++.
T Consensus 109 iif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~--~~~~~f-~d~L~fGaliSATDPVtvLaIfn 185 (575)
T KOG1965|consen 109 IIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLL--IYDLSF-KDCLAFGALISATDPVTVLAIFN 185 (575)
T ss_pred hhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccc--cccccH-HHHHHHhhHhcccCchHHHHHHH
Confidence 8899999999999999999999999998877644 4554444322111 234444 68899999999999999999999
Q ss_pred hccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 180 DLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLI---SIWVLISGVAFVAFMLIVVRPIMDWVA 256 (806)
Q Consensus 180 el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~l~ 256 (806)
|++ ...++-.++.+++++||.++++++..+....... .+... .+..++.....-..++...+.+-..+.
T Consensus 186 el~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~-------~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~l 257 (575)
T KOG1965|consen 186 ELG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGS-------LNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVL 257 (575)
T ss_pred HhC-CCcceeeeeecchhccchhHHHHHHHHHHHccCC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 7889999999999999999999998777665431 11111 222222222222222223333333334
Q ss_pred HHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCC-----CChhHHHHHHHHHHHHhhhhHHHHH
Q 003629 257 RQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-----GDFVVRLMKKIQDFVSGLLLPLYFA 331 (806)
Q Consensus 257 ~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~-----~~~~~~l~~~l~~~~~~~~~plfF~ 331 (806)
|.. .-+ ........+.+.+....+++||++|+++++..++.|+++++. .+..+.-.+.+..+...+...+-|+
T Consensus 258 K~~-~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~ 335 (575)
T KOG1965|consen 258 KFL-YLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFI 335 (575)
T ss_pred HHH-Hhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 111 112344678888999999999999999999999999999852 3333444445555557888888999
Q ss_pred Hhccc-cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHhhcchhHHHHHHHh
Q 003629 332 SSGLK-TDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMI----------PVRESLALGVLMNTKGLVELIVLNI 400 (806)
Q Consensus 332 ~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~----------~~~~~~~lgl~m~~rG~v~l~~~~~ 400 (806)
++|+. ++...... .....+....++.+++|..-.+-.+.+.+. +.++-..++|.=.-||.++++++..
T Consensus 336 Y~Gl~~f~~~k~~~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 336 YLGLSAFDFQKHVY-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred HHhHHHhcccceee-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 99963 34333322 112345556667788898887777766543 3344455666434799999888743
Q ss_pred hc-cc-----CCCCHHHHHHHHHHHHHHHHhhHHHHHHHhcccc
Q 003629 401 GR-EK-----KVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLR 438 (806)
Q Consensus 401 ~~-~~-----~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~ 438 (806)
-. +. +.+-..+..++++++++....+.|+++++.....
T Consensus 415 ~~~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~ 458 (575)
T KOG1965|consen 415 DFTDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVG 458 (575)
T ss_pred hccccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccc
Confidence 21 11 2232333444556666666778899888764433
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.73 E-value=7.7e-15 Score=160.16 Aligned_cols=270 Identities=19% Similarity=0.269 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIG 163 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg 163 (806)
.+-+.+--+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-+. +.... . ...-.+|
T Consensus 63 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~---~-----~~~~GW~ 130 (423)
T PRK14853 63 GTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAG---G-----GALRGWA 130 (423)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCc---h-----hhhhhhh
Confidence 44455566778899999999654432 122222 35677888888764433 22111 0 1112222
Q ss_pred HHHhhccHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q 003629 164 VSLSITAFPVLARILADLKL-LTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVA 242 (806)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el~l-l~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (806)
+ -+.||.+....+|..+|. .++.++..+++.+++||+.++++++++. + ++.+. .+.......+
T Consensus 131 I-p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t-------~~i~~---~~L~~a~~~~-- 194 (423)
T PRK14853 131 I-PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---T-------SELNL---EALLLALVPL-- 194 (423)
T ss_pred h-hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---C-------CCCCH---HHHHHHHHHH--
Confidence 2 344788888999999874 4889999999999999999999998765 1 12222 2222211111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCC-----------ChhH
Q 003629 243 FMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG-----------DFVV 311 (806)
Q Consensus 243 ~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~-----------~~~~ 311 (806)
++ .|+.+|. + +++.+.++++ .+.+.+..+..|+|+.+|+|++|+++|..+ +..+
T Consensus 195 ~~--------l~~l~~~-~----V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~ 259 (423)
T PRK14853 195 AL--------FWLLVQK-R----VRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAE 259 (423)
T ss_pred HH--------HHHHHHc-C----CchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHH
Confidence 11 1333343 1 2333444444 335667899999999999999999999411 2357
Q ss_pred HHHHHHHHHHHhhhhHHH-HHHhccccch-hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHH
Q 003629 312 RLMKKIQDFVSGLLLPLY-FASSGLKTDV-AKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRE 379 (806)
Q Consensus 312 ~l~~~l~~~~~~~~~plf-F~~~G~~idl-~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~ 379 (806)
++++++++++..+++|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++
T Consensus 260 rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~ 339 (423)
T PRK14853 260 HLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWID 339 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHH
Confidence 899999999999999999 9999999986 4342211112456677888999999988887763 468888
Q ss_pred HHHHHHHhhcch-hHHHHHHHhhcc
Q 003629 380 SLALGVLMNTKG-LVELIVLNIGRE 403 (806)
Q Consensus 380 ~~~lgl~m~~rG-~v~l~~~~~~~~ 403 (806)
-..+|+ ++..| ++++.+++.+.+
T Consensus 340 l~gv~~-L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 340 VFGVAL-LAGIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhcC
Confidence 888888 56666 677888888883
No 19
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.3e-15 Score=155.39 Aligned_cols=355 Identities=16% Similarity=0.205 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCch
Q 003629 33 QTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLS 112 (806)
Q Consensus 33 ~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~ 112 (806)
.-+.+.+++...-++-+++-+..-+--.+.|+++||+.+++.++.. . .+.......++.+-+-.=.|.++.|+.-.
T Consensus 18 ~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~---w-gn~d~it~ei~RvvLcvqvfava~eLPr~ 93 (467)
T KOG4505|consen 18 SGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS---W-GNKDYITYEISRVVLCVQVFAVAMELPRA 93 (467)
T ss_pred HhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc---c-cCcchhhhhhhhhhHhHHHHHHHHhccHH
Confidence 3344555556666666777777777778999999999988754310 0 11234556678888888899999999999
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhc---cccCCchH
Q 003629 113 SIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADL---KLLTTQVG 189 (806)
Q Consensus 113 ~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~ll~s~~g 189 (806)
.+.++|+..+.+-+--++.-+++.+++.|.+... .++ ..++.++..++.|+|.....+..+. |..+.++.
T Consensus 94 Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~------lnf-~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR 166 (467)
T KOG4505|consen 94 YMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN------LNF-LTSLLIAACITATDPILSSSIVGGGKFAKRVPERIR 166 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccH-HHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHH
Confidence 9999999888777666666666666666665432 233 5679999999999987666666644 33567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchH
Q 003629 190 QTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDA 269 (806)
Q Consensus 190 ~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~ 269 (806)
.+..+++-.||.+++.++-+.+.+....... ..+..+ ....++--+.|..+.+.+++.+.+..+|...+++-...|+
T Consensus 167 ~lL~AESGcNDGMaipflflai~Ll~h~~~r--~~~rdw-v~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eS 243 (467)
T KOG4505|consen 167 NLLAAESGCNDGMAIPFLFLAIDLLRHKPRR--KAGRDW-VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRES 243 (467)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHhcCchh--ccCCce-ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 9999999999999999887777665432100 001111 1122333344445555555555555444432223445788
Q ss_pred HHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHH-HHHHHHHHhhhhHHHHHHhccccchhhhcch---
Q 003629 270 YICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLM-KKIQDFVSGLLLPLYFASSGLKTDVAKIRGV--- 345 (806)
Q Consensus 270 ~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~-~~l~~~~~~~~~plfF~~~G~~idl~~l~~~--- 345 (806)
|..+-+++.+.+..+.+.+|++-.+-.|.||.+++.+.-+..+.. .++..+...++.-.||++.|..++.+.++..
T Consensus 244 fl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~g 323 (467)
T KOG4505|consen 244 FLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEG 323 (467)
T ss_pred HHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccC
Confidence 999999999999999999999999999999999997666654443 3666776777888999999999999887653
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHhhcchhHHHHHHHhhc
Q 003629 346 -EAWGLLVLVISTACAGKILGTFVMALLCM--IPVRESLALGVLMNTKGLVELIVLNIGR 402 (806)
Q Consensus 346 -~~~~~~~~~i~~~~~~K~~~~~l~~~~~~--~~~~~~~~lgl~m~~rG~v~l~~~~~~~ 402 (806)
..|..+++.+.+.+.-|+-.+++.-.+.- .+|||++++|. .+|.|.-++..+..+.
T Consensus 324 l~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 324 LPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred chHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 25666666666666666666655433321 48999999999 8999987776655543
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.49 E-value=3.1e-12 Score=137.24 Aligned_cols=269 Identities=22% Similarity=0.305 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCchhHHHHH
Q 003629 89 ILESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVD-GESKVGYGQFIIF 161 (806)
Q Consensus 89 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~ 161 (806)
..+-+.+.-+.++.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++-.. +....+ ...+|.. +.+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~----~n~~~~~~~~GW~I-P~A-- 124 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLA----FNANDPITREGWAI-PAA-- 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eecCCCcccCcccc-ccH--
Confidence 344455566778899999999877764 333333 34566778888654332 211110 0123332 222
Q ss_pred HHHHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHH
Q 003629 162 IGVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAF 240 (806)
Q Consensus 162 lg~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (806)
|+.+-...++.=+ +..+..+....++-+++||+.++++.++..+ ++- ...+...+..++
T Consensus 125 -------TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----------~~i---~~~~L~~a~~~~ 184 (373)
T TIGR00773 125 -------TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----------NDL---SMAALLVAAVAI 184 (373)
T ss_pred -------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----------CCC---CHHHHHHHHHHH
Confidence 2222222222222 2367888999999999999999988886542 111 222332222211
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh----hHHHHHH
Q 003629 241 VAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF----VVRLMKK 316 (806)
Q Consensus 241 ~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~----~~~l~~~ 316 (806)
. ..++.+|. . .++...+..+. ++..+++ ...|+|+.+|+|++|+++|+..+. .+++++.
T Consensus 185 ~----------~l~~~~~~-~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~ 247 (373)
T TIGR00773 185 A----------VLAVLNRC-G----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHV 247 (373)
T ss_pred H----------HHHHHHHc-C----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHH
Confidence 1 11333444 1 12222333333 3333333 799999999999999999974332 3567777
Q ss_pred HHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 003629 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGV 385 (806)
Q Consensus 317 l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl 385 (806)
+++.+..+++|+| |+..|.++|...+.. ........+++..+++|.+|++..++.. +++|++-.-+|+
T Consensus 248 L~p~v~~lilPlFAFanAGv~l~~~~~~~-~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~ 326 (373)
T TIGR00773 248 LHPWVAYLILPLFAFANAGVSLQGVSLNG-LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV 326 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCeeeecCcchh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 7788889999999 999999998755433 2233466778888999999999998764 468888888887
Q ss_pred Hhhcch-hHHHHHHHhhcc
Q 003629 386 LMNTKG-LVELIVLNIGRE 403 (806)
Q Consensus 386 ~m~~rG-~v~l~~~~~~~~ 403 (806)
++..| ++++.+.+.+.+
T Consensus 327 -L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 327 -LCGIGFTMSIFIASLAFG 344 (373)
T ss_pred -HHHHHHHHHHHHHHHhcC
Confidence 55555 677777777774
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.39 E-value=3.7e-12 Score=119.68 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=103.0
Q ss_pred eEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHH
Q 003629 463 KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEA 542 (806)
Q Consensus 463 riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~ 542 (806)
|||+|+++.++...+++.+..++. ..+.+++++|+++.+....... . . . . ....++.++.+.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~--~~~~~v~ll~v~~~~~~~~~~~--~-~-~------~-----~~~~~~~~~~~~~ 63 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALAR--AQNGEIIPLNVIEVPNHSSPSQ--L-E-V------N-----VQRARKLLRQAER 63 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhh--cCCCeEEEEEEEecCCCCCcch--h-H-H------H-----HHHHHHHHHHHHH
Confidence 699999999999999999999994 4678999999999765443210 0 0 0 0 0224566666666
Q ss_pred HhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 543 YNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 543 ~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
.....++.++..+..+ .+..++||+.|+++++|+|+||+|+++...+. .+|+++++|++++||||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~--------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR--------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce--------ecCchHHHHHhcCCCCEEEe
Confidence 6555667777777666 57999999999999999999999998877555 68999999999999999976
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.29 E-value=3.2e-12 Score=140.88 Aligned_cols=377 Identities=13% Similarity=0.117 Sum_probs=237.3
Q ss_pred HHHHHHHHhhhccC--CChhHHHHHHHhhcCcccCCC--chhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 003629 39 LTSHCLAFLIKPLR--QPKVIAEILGGILLGPSALGR--NKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSI 114 (806)
Q Consensus 39 ~~~~~~~~l~~rl~--~P~iv~~ilaGillGP~~lg~--~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 114 (806)
.++.+..-+..+++ +|.-...|+.|+++|-.+.+. ..+ +..++ +.+--.-+--++|.+|.-|.-+.+
T Consensus 52 sLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~-----~~L~s----~vFFlyLLPPIvlDAGYfMp~r~F 122 (670)
T KOG1966|consen 52 SLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP-----FFLES----DVFFLYLLPPIVLDAGYFMPNRAF 122 (670)
T ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc-----ccccc----cchhhhhcCHHHhcccccCccHHH
Confidence 33444444444544 688777888888888544321 111 00000 011111122378999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHH
Q 003629 115 RQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMA 194 (806)
Q Consensus 115 ~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~ 194 (806)
..|...++..|.+|.+.-.+...+..|.+..........+. ...+++|...|..+|..+..+.+|.. .|.-+=-++.+
T Consensus 123 f~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~gl-ld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFG 200 (670)
T KOG1966|consen 123 FENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGL-LDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFG 200 (670)
T ss_pred HhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchH-HHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeeh
Confidence 99999999999999887544332222222221100112222 45688999999999999999999999 78888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHH
Q 003629 195 AAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLT 274 (806)
Q Consensus 195 ~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~ 274 (806)
++++||.+.+++.-+..++..-++..... .+.......++.+.+++++++.++..+.....|.+ .+-.+-| -+++
T Consensus 201 ESLlNDaVTVVLY~~f~sf~~ig~~n~~~-~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft--~~vrvie--Pvfi 275 (670)
T KOG1966|consen 201 ESLLNDAVTVVLYNMFISFVEIGSDNLTT-IDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT--KHVRVLE--PVFI 275 (670)
T ss_pred hhhhcCceEEehHHHHHHHHHhcccceeE-eeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh--cceeeec--chhh
Confidence 99999999999998777766542110000 00011112222233344455555555555556665 2222222 4678
Q ss_pred HHHHHHHHHHHHHHchhHhHHHHHHHhhcCC-----CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHH
Q 003629 275 LVGVMVSGFLTDLIGIHAIFGAFVFGLTIPK-----GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWG 349 (806)
Q Consensus 275 l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~-----~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 349 (806)
+.+...+|..+|.+++|++++-.+.|+++.. .......-.+.+-...+..-.++-|++.|.++--. ...++|.
T Consensus 276 f~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~ 353 (670)
T KOG1966|consen 276 FLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFA 353 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehh
Confidence 8899999999999999999999999999874 22222222333333345667788899999876433 3335677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH-----HHHHHHHHH
Q 003629 350 LLVLVISTACAGKILGTFVMALLC------MIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND-----EMFAILVVM 418 (806)
Q Consensus 350 ~~~~~i~~~~~~K~~~~~l~~~~~------~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~-----~~~~~lvl~ 418 (806)
++.+-++.+.+.|.+++...+++. +++..|.+.++.+ +-||.+++.+...--...+-.. .++.++.++
T Consensus 354 Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFT 432 (670)
T KOG1966|consen 354 FICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFT 432 (670)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeee
Confidence 777777888889999988888775 4577788777764 6688766544433222333223 333344455
Q ss_pred HHHHHHhhHHHHHHHh
Q 003629 419 ALFTTFMTTPMVMAIY 434 (806)
Q Consensus 419 v~v~t~i~~pl~~~l~ 434 (806)
+.+..+.+-|+++|+-
T Consensus 433 VflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 433 VFLQGITIKPLVKFLK 448 (670)
T ss_pred eeecccchHHHHHHHc
Confidence 5566666788888875
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.24 E-value=2.5e-09 Score=116.74 Aligned_cols=268 Identities=22% Similarity=0.287 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHH
Q 003629 89 ILESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFI 162 (806)
Q Consensus 89 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~l 162 (806)
..+-+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-.. +....+...+|.. +.+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~----~n~~~~~~~GWgI-PmA--- 139 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFF----LNADTPSQHGFGI-PMA--- 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhh----eecCCCccCcccc-ccH---
Confidence 344566666778999999999877664 233333 34567778888654332 2211111123322 111
Q ss_pred HHHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHH
Q 003629 163 GVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFV 241 (806)
Q Consensus 163 g~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (806)
|+.+-...++.=+ +..++.+....++-+++||+.+++++++..+ ++ ....+...+..+++
T Consensus 140 ------TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~---i~~~~L~~a~~~~~ 200 (438)
T PRK14856 140 ------TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----------TN---LKFAWLLGALGVVL 200 (438)
T ss_pred ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----------CC---CcHHHHHHHHHHHH
Confidence 2322223332222 2267788899999999999999998886552 11 22333333322221
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh------------
Q 003629 242 AFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF------------ 309 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~------------ 309 (806)
+ .++.+|. . .+....++++.. ...+.....|+|+.++..+.|+++|..++.
T Consensus 201 ~----------l~~ln~~-~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~ 263 (438)
T PRK14856 201 V----------LAVLNRL-N----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGK 263 (438)
T ss_pred H----------HHHHHHc-C----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhh
Confidence 1 1233443 1 122223333333 334456679999999999999999953221
Q ss_pred --------------------------------hHHHHHHHHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHH
Q 003629 310 --------------------------------VVRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVIS 356 (806)
Q Consensus 310 --------------------------------~~~l~~~l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~ 356 (806)
.+++++.+.+.+..+.+|+| |+..|..++...... .-.....+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~ 341 (438)
T PRK14856 264 RYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVIL 341 (438)
T ss_pred hhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHH
Confidence 13566778888888999999 899999998543221 1234455677
Q ss_pred HHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHhhcch-hHHHHHHHhhcc
Q 003629 357 TACAGKILGTFVMALLC----------MIPVRESLALGVLMNTKG-LVELIVLNIGRE 403 (806)
Q Consensus 357 ~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~m~~rG-~v~l~~~~~~~~ 403 (806)
..+++|.+|.+..++.. +++|++-.-.|+ ++..| ++++.+++.+.+
T Consensus 342 GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 342 GLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 78899999998887763 468888888887 56666 677778887773
No 24
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.11 E-value=2.4e-08 Score=107.56 Aligned_cols=268 Identities=19% Similarity=0.235 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIG 163 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg 163 (806)
.+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-+.+.. +... ...+|.. +.+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~-~~~GWgI-PmA---- 131 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE-TLRGWAI-PAA---- 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-ccCcccc-ccH----
Confidence 34455556678899999999877764 233333 34567778888654332211 1100 0123432 222
Q ss_pred HHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q 003629 164 VSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVA 242 (806)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (806)
|+.+-...++.=+ +..+..+....++-+++||+.++++.++..+ ++- ...|...+..++.+
T Consensus 132 -----TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----------~~i---~~~~L~~a~~~~~~ 193 (389)
T PRK09560 132 -----TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----------SDL---SLPALALAAIAIAV 193 (389)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----------CCC---CHHHHHHHHHHHHH
Confidence 2322222332222 2267788899999999999999988886542 112 22333332221111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh------hHHHHHH
Q 003629 243 FMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF------VVRLMKK 316 (806)
Q Consensus 243 ~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~------~~~l~~~ 316 (806)
.++.+|. . .+....+..+.. ...+.....|+|+.++..++|+.+|...+. .++++++
T Consensus 194 ----------l~~ln~~-~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~ 256 (389)
T PRK09560 194 ----------LFLLNRL-G----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHA 256 (389)
T ss_pred ----------HHHHHHc-C----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHH
Confidence 1223443 1 122223333333 334455678999999999999999953221 3578899
Q ss_pred HHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHH
Q 003629 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGV 385 (806)
Q Consensus 317 l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl 385 (806)
+++.+..+.+|+| |+..|..++-..+.. ..-.....+++..+++|.+|.++.++.. +.+|++-..+|+
T Consensus 257 L~p~v~~~IlPlFAlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~ 335 (389)
T PRK09560 257 LHPWVAFAILPLFAFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV 335 (389)
T ss_pred hhhhhhhhhHHHHHhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 9999888889999 888898884322322 1122445567777899999988887763 468888888887
Q ss_pred Hhhcch-hHHHHHHHhhc
Q 003629 386 LMNTKG-LVELIVLNIGR 402 (806)
Q Consensus 386 ~m~~rG-~v~l~~~~~~~ 402 (806)
++..| ++++.+++.+.
T Consensus 336 -L~GIGFTmSLFIa~LAF 352 (389)
T PRK09560 336 -LCGIGFTMSLFIGSLAF 352 (389)
T ss_pred -HHHHHHHHHHHHHHhhc
Confidence 45555 67777778777
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.09 E-value=1.7e-08 Score=108.10 Aligned_cols=269 Identities=17% Similarity=0.227 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIG 163 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg 163 (806)
.+-+.+.=+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +.. ...+|.. +.+
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~--~~~GW~I-P~A---- 127 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIK--VINGWAI-PSA---- 127 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCc--ccCcccc-ccH----
Confidence 34455555677899999999877664 233333 34567788888764443221 111 0123332 222
Q ss_pred HHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q 003629 164 VSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVA 242 (806)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (806)
|+.+-...++.=+ +..+..+.-..++-+++||+.++++.++..+ ++- ...+...+...+
T Consensus 128 -----TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----------~~i---~~~~L~~A~~~~-- 187 (383)
T PRK14854 128 -----TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----------KSL---SLLSLSLGTLFI-- 187 (383)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----------CCc---cHHHHHHHHHHH--
Confidence 2222222222222 2367888889999999999999988886541 111 122222221111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCC----hhHHHHHHHH
Q 003629 243 FMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGD----FVVRLMKKIQ 318 (806)
Q Consensus 243 ~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~----~~~~l~~~l~ 318 (806)
...+ .+.|+. + .+....+.++. +...+.....|+|+.++..+.|+++|...+ -.++++++++
T Consensus 188 ~~l~-------~~nr~~---~--v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~ 253 (383)
T PRK14854 188 LAMI-------ICNRIF---K--INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLH 253 (383)
T ss_pred HHHH-------HHHHhc---C--CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhh
Confidence 1111 122221 0 12222333333 333445667999999999999999996321 1357889999
Q ss_pred HHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHh
Q 003629 319 DFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGVLM 387 (806)
Q Consensus 319 ~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~m 387 (806)
+.+..+.+|+| |+..|..++-..+.. ..-.....+++..+++|.+|.+..++.. +.+|++-..+|+ +
T Consensus 254 p~v~~~IlPlFA~aNAGV~l~~~~~~~-~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L 331 (383)
T PRK14854 254 PWIIYFILPVFAFANAGISFSGISFSI-LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-L 331 (383)
T ss_pred chHHHhhHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-H
Confidence 99999999999 888898884222221 1123345566777899999988887763 467888888888 5
Q ss_pred hcch-hHHHHHHHhhcc
Q 003629 388 NTKG-LVELIVLNIGRE 403 (806)
Q Consensus 388 ~~rG-~v~l~~~~~~~~ 403 (806)
+..| ++++.+++.+.+
T Consensus 332 ~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 332 CGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 5555 677788888774
No 26
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.07 E-value=3.7e-08 Score=105.97 Aligned_cols=268 Identities=21% Similarity=0.265 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCCchhHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDG-ESKVGYGQFIIFI 162 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~l 162 (806)
.+-+.+.-+.++.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-.. +....+. ..+|.. +.+
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~----~n~~~~~~~~GWaI-P~A--- 131 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLL----FNYADPVTREGWAI-PAA--- 131 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhh----eecCCCcccCcccc-ccH---
Confidence 34455555678899999999887774 233333 34566778888654332 2211100 123332 222
Q ss_pred HHHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHH
Q 003629 163 GVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFV 241 (806)
Q Consensus 163 g~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (806)
|+.+-...++.=+ +..+..+....++-+++||+.++++.++..+ ++- ...+...+...+
T Consensus 132 ------TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~i---~~~~L~~a~~~~- 191 (388)
T PRK09561 132 ------TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----------SDL---SMVSLGVAAVAI- 191 (388)
T ss_pred ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----------CCc---cHHHHHHHHHHH-
Confidence 2222222222222 2367788899999999999999998886541 111 122222222111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCC----hhHHHHHHH
Q 003629 242 AFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGD----FVVRLMKKI 317 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~----~~~~l~~~l 317 (806)
.. .++.+|. . .+....+.++.. ...+.....|+|+.++..+.|+.+|...+ -.+++++++
T Consensus 192 -~~--------l~~ln~~-~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L 255 (388)
T PRK09561 192 -AV--------LAVLNLC-G----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGL 255 (388)
T ss_pred -HH--------HHHHHHc-C----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHh
Confidence 11 1233443 1 122223333333 33445667999999999999999996322 136788999
Q ss_pred HHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHH
Q 003629 318 QDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGVL 386 (806)
Q Consensus 318 ~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~ 386 (806)
++.+..+.+|+| |+..|..++-..+.. ..-.....+++..+++|.+|.+..++.. +++|++-.-+|+
T Consensus 256 ~p~v~~~IlPlFAfaNAGV~l~~~~~~~-~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~- 333 (388)
T PRK09561 256 HPWVAFLILPLFAFANAGVSLQGVTLDG-LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV- 333 (388)
T ss_pred hhhhhheeHHHHHhhcCCeeeccCcHHh-hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-
Confidence 999999999999 888888883222211 1122344566777899999988887763 468888888887
Q ss_pred hhcch-hHHHHHHHhhcc
Q 003629 387 MNTKG-LVELIVLNIGRE 403 (806)
Q Consensus 387 m~~rG-~v~l~~~~~~~~ 403 (806)
++..| ++++.+++.+.+
T Consensus 334 L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 334 LCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 55555 577777777774
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=3.9e-08 Score=107.15 Aligned_cols=264 Identities=22% Similarity=0.267 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIG 163 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg 163 (806)
.+-+.+--+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-.. +....+...+|.. +.+
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~~~~~~GWgI-PmA---- 134 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAGGPGASGWGV-PMA---- 134 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecCCCccCcccc-ccH----
Confidence 34455556678899999999887764 233433 34566777888654332 2211111123322 111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q 003629 164 VSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVA 242 (806)
Q Consensus 164 ~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (806)
|+.+-...++.=+ +..+..+....++-+++||+.++++.++..+ ++-+ ..+...+.+++.+
T Consensus 135 -----TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----------~~i~---~~~L~~a~~~~~~ 196 (423)
T PRK14855 135 -----TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----------SGLN---LLALLLAALTWAL 196 (423)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----------CCCC---HHHHHHHHHHHHH
Confidence 3333333333223 2256778899999999999999988886552 1122 2233222221111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCC-Ch------------
Q 003629 243 FMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG-DF------------ 309 (806)
Q Consensus 243 ~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~-~~------------ 309 (806)
.++.+|. . ++....++.+.. ...+.....|+|+.++..+.|+++|..+ +.
T Consensus 197 ----------l~~ln~~-~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~ 259 (423)
T PRK14855 197 ----------ALLAGRL-G----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAA 259 (423)
T ss_pred ----------HHHHHHc-C----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhh
Confidence 1233443 1 122223333333 3344566799999999999999998631 10
Q ss_pred ------------------------hHHHHHHHHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 003629 310 ------------------------VVRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKIL 364 (806)
Q Consensus 310 ------------------------~~~l~~~l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~ 364 (806)
.+++++.+++.+..+.+|+| |+..|..++-.. .. .....+++..+++|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~l 334 (423)
T PRK14855 260 PGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPL 334 (423)
T ss_pred cccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchH
Confidence 24577888899888999999 888898885333 22 2344566777889999
Q ss_pred HHHHHHHHh----------CCChHHHHHHHHHhhcch-hHHHHHHHhhcc
Q 003629 365 GTFVMALLC----------MIPVRESLALGVLMNTKG-LVELIVLNIGRE 403 (806)
Q Consensus 365 ~~~l~~~~~----------~~~~~~~~~lgl~m~~rG-~v~l~~~~~~~~ 403 (806)
|.++.++.. +++|++-.-.|+ ++..| ++++.+++.+.+
T Consensus 335 GI~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 335 GVVGGAWLAVRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 998887763 568888888888 55555 677778888774
No 28
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.95 E-value=8.7e-09 Score=98.79 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=91.4
Q ss_pred eEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHH
Q 003629 463 KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEA 542 (806)
Q Consensus 463 riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~ 542 (806)
.||+|+++.++....++.+-.+. +....+++++|+++.+.......-.....+. ..+.. .+..++.++.+..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a--~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~l~~~~~ 72 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNL--ATKGQTIVLVHVHPPITSIPSSSGKLEVASA---YKQEE---DKEAKELLLPYRC 72 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhc--cCCCCcEEEEEeccCcccCCCCccchHHHHH---HHHHH---HHHHHHHHHHHHH
Confidence 48999999999999999998877 3467899999998754221110000000000 00000 0112333333322
Q ss_pred HhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchH-HHHHHHhhcCC--CceEE
Q 003629 543 YNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWR-EVNRTVLLNAP--CSVAV 619 (806)
Q Consensus 543 ~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~-~v~~~vl~~ap--c~V~i 619 (806)
..+..++.++..+... .+.++.|++.|++.++|+|+||.|++.+..+. .++ ++.++|+++|| |||.+
T Consensus 73 ~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~--------~~gssva~~Vi~~a~~~c~Vlv 142 (146)
T cd01989 73 FCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMK--------FKKSDVASSVLKEAPDFCTVYV 142 (146)
T ss_pred HHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeec--------ccCCchhHHHHhcCCCCceEEE
Confidence 2222456665544433 47899999999999999999999999877655 566 69999999999 99996
Q ss_pred E
Q 003629 620 L 620 (806)
Q Consensus 620 l 620 (806)
+
T Consensus 143 v 143 (146)
T cd01989 143 V 143 (146)
T ss_pred E
Confidence 6
No 29
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.93 E-value=2.5e-09 Score=114.91 Aligned_cols=272 Identities=20% Similarity=0.322 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHH
Q 003629 88 PILESVASIGLLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIF 161 (806)
Q Consensus 88 ~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (806)
...+-+.+--+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++-.. +.... + ...--
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~----~n~~~---~-----~~~~G 121 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA----FNAGG---P-----EAAHG 121 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G--SS---T-----THHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe----eecCC---C-----CcCce
Confidence 3445556666778899999999877664 333433 34456777777653221 21111 0 01112
Q ss_pred HHHHHhhccHHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHH
Q 003629 162 IGVSLSITAFPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAF 240 (806)
Q Consensus 162 lg~~ls~Ts~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (806)
+|+-+ .|+.+-...++.=+ +..+..+....++-+++||+.++++.++..+ ++ ....+......++
T Consensus 122 W~IP~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----------~~---i~~~~L~~a~~~~ 187 (378)
T PF06965_consen 122 WAIPM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----------DG---ISLLWLLLAAAAL 187 (378)
T ss_dssp TSSSS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------------HHHHHHHHHHH
T ss_pred EEecc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----------CC---CCHHHHHHHHHHH
Confidence 22211 23433334444333 2356778899999999999999998886652 11 1222322222211
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChh--------HH
Q 003629 241 VAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFV--------VR 312 (806)
Q Consensus 241 ~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~--------~~ 312 (806)
++ .+..+|. . .+....+..+. +...+.....|+|+.++..+.|+.+|..++.. ++
T Consensus 188 -~~---------l~~l~r~-~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~r 250 (378)
T PF06965_consen 188 -LL---------LFVLNRL-G----VRSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLER 250 (378)
T ss_dssp -HH---------HHHHHHT-T-------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHH
T ss_pred -HH---------HHHHHHC-C----CceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHH
Confidence 11 1233443 1 11122333333 23344556789999999999999999644432 47
Q ss_pred HHHHHHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHH
Q 003629 313 LMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESL 381 (806)
Q Consensus 313 l~~~l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~ 381 (806)
+++++++.++.+.+|+| |+..|..++-..+... .-.....+++..+++|.+|.+..++.. +++|++-.
T Consensus 251 le~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~ 329 (378)
T PF06965_consen 251 LEHALHPWVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLY 329 (378)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGT
T ss_pred HHHHhhhhhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHH
Confidence 88999999999999999 8999999886654431 223334466777899999988887653 45777777
Q ss_pred HHHHHhhcch-hHHHHHHHhhccc
Q 003629 382 ALGVLMNTKG-LVELIVLNIGREK 404 (806)
Q Consensus 382 ~lgl~m~~rG-~v~l~~~~~~~~~ 404 (806)
..|+ ++..| ++++.+++.+.+.
T Consensus 330 gv~~-LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 330 GVGL-LAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp THHH-HTT--HHHHHHHHHHHSTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCC
Confidence 7777 45555 6778888888875
No 30
>PRK15456 universal stress protein UspG; Provisional
Probab=98.88 E-value=7.5e-09 Score=98.83 Aligned_cols=134 Identities=10% Similarity=0.091 Sum_probs=86.8
Q ss_pred ceEEEEecCCC--ChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHH
Q 003629 462 FKIQACVHGPE--NVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVAS 539 (806)
Q Consensus 462 ~riLv~v~~~~--~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~a 539 (806)
.|||+|+++.+ +....++.+..++. .. ..++++|+++-..... . .........+ + ....++..+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~--~~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~-~-----~~~~~~~~~~ 69 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQ--DD-GVIHLLHVLPGSASLS-L---HRFAADVRRF-E-----EHLQHEAEER 69 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHh--cC-CeEEEEEEecCccccc-c---cccccchhhH-H-----HHHHHHHHHH
Confidence 37999999984 78888888877763 33 4799999987432111 0 0000000000 0 0111222223
Q ss_pred HHHHhh---cCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCc
Q 003629 540 LEAYNQ---LRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCS 616 (806)
Q Consensus 540 f~~~~~---~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~ 616 (806)
++.+.+ ..++.++..+.. .+..+.|++.|++.++||||||.|++. ..+. .+|++.++|++++|||
T Consensus 70 l~~~~~~~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~--------llGS~a~~v~~~a~~p 137 (142)
T PRK15456 70 LQTMVSHFTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-ISTH--------LLGSNASSVIRHANLP 137 (142)
T ss_pred HHHHHHHhCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-ccce--------ecCccHHHHHHcCCCC
Confidence 333322 244566655544 478999999999999999999999964 5444 6899999999999999
Q ss_pred eEEE
Q 003629 617 VAVL 620 (806)
Q Consensus 617 V~il 620 (806)
|.|+
T Consensus 138 VLvV 141 (142)
T PRK15456 138 VLVV 141 (142)
T ss_pred EEEe
Confidence 9976
No 31
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.87 E-value=1.3e-08 Score=97.56 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=90.1
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcC-CCcE
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKC-DGSV 721 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v 721 (806)
+|+++++|++..+.|+++|.+++...+.+++++|++++..... .............++.++..++.++++.+.. ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIP-SSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4899999999999999999999999999999999986531110 0000000000000112233445555554431 2233
Q ss_pred EEEEEEe--CChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccc-cchhhhhcCCCCCc--ccEEEEee
Q 003629 722 ECEEKVM--GTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLG-PIGNILASSDHGIL--ASVLVIQQ 795 (806)
Q Consensus 722 ~~~e~~v--~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG-~igd~las~d~~~~--~svlvvqq 795 (806)
.+....+ ++..+++....+..++||||||+|+ ++|+.+ + -+| .+.+.++.. .+ |+|||||.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g-----~~~l~~-~----~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS-----DNHFSM-K----FKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC-----CCceee-c----ccCCchhHHHHhc---CCCCceEEEEeC
Confidence 4443333 3667765555555559999999999 677766 3 456 699999998 78 99999985
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.87 E-value=1.3e-08 Score=94.53 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=90.9
Q ss_pred eEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHH
Q 003629 463 KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEA 542 (806)
Q Consensus 463 riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~ 542 (806)
|||+|+++.+....+++.+..++. +.+..++++|+++-... .. + ...++.++.+.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~~--~~--------------~------~~~~~~l~~~~~ 56 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLAD--RLKAPWYVVYVETPRLN--RL--------------S------EAERRRLAEALR 56 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHH--HhCCCEEEEEEecCccc--cC--------------C------HHHHHHHHHHHH
Confidence 689999999999999999988883 46779999999863211 00 0 112344444444
Q ss_pred HhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcC-CCceEEE
Q 003629 543 YNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNA-PCSVAVL 620 (806)
Q Consensus 543 ~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~a-pc~V~il 620 (806)
..+..++.. .+..+ .+..+.|++.|++.++|+|+||+|++....+. .+|++.++|+++| ||+|.|.
T Consensus 57 ~~~~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~--------~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 57 LAEELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL--------FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH--------hcccHHHHHHHhCCCCeEEEe
Confidence 443334433 23334 57899999999999999999999998877766 7899999999999 9999875
No 33
>PRK15005 universal stress protein F; Provisional
Probab=98.85 E-value=1.9e-08 Score=96.14 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=85.6
Q ss_pred ceEEEEecCCCC--hhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHH
Q 003629 462 FKIQACVHGPEN--VPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVAS 539 (806)
Q Consensus 462 ~riLv~v~~~~~--~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~a 539 (806)
.+||+|+++.++ ....++.+..++ +..+.+++++|+++........ ........+..+ ...++..+.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la--~~~~~~l~ll~v~~~~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~ 71 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEA--KIDDAEVHFLTVIPSLPYYASL---GLAYSAELPAMD------DLKAEAKSQ 71 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHH--hccCCeEEEEEEEccCcccccc---cccccccchHHH------HHHHHHHHH
Confidence 369999999987 456777777776 3467789999999853221100 000000000000 011222223
Q ss_pred HHHHhhc---CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCc
Q 003629 540 LEAYNQL---RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCS 616 (806)
Q Consensus 540 f~~~~~~---~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~ 616 (806)
++++.+. .++.++..+.. .+..+.|++.|++.++||||||.|+ .+..+. .+|++..+|++++|||
T Consensus 72 l~~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~--------llGS~a~~vl~~a~cp 139 (144)
T PRK15005 72 LEEIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTY--------LLGSNAAAVVRHAECS 139 (144)
T ss_pred HHHHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchhe--------eecchHHHHHHhCCCC
Confidence 3333222 33444444432 5789999999999999999999984 445555 6899999999999999
Q ss_pred eEEE
Q 003629 617 VAVL 620 (806)
Q Consensus 617 V~il 620 (806)
|.++
T Consensus 140 VlvV 143 (144)
T PRK15005 140 VLVV 143 (144)
T ss_pred EEEe
Confidence 9976
No 34
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.82 E-value=5.4e-08 Score=91.21 Aligned_cols=129 Identities=13% Similarity=0.179 Sum_probs=87.1
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhc---CCC
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRK---CDG 719 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~ 719 (806)
+|++|.+|+++++.++++|.+||+.++.+++++|+++..... .. . ..+...+..++.++.+.+. .+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~--~~----~----~~~~~~~~~~~~~~~~~~~~~~~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHS--SP----S----QLEVNVQRARKLLRQAERIAASLGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCC--Cc----c----hhHHHHHHHHHHHHHHHHHhhhcCC
Confidence 589999999999999999999999999999999999753111 00 0 0111122233444444333 233
Q ss_pred cEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEe
Q 003629 720 SVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQ 794 (806)
Q Consensus 720 ~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvq 794 (806)
.+.+....-.+..+.+....+..++||+|||+++ .+++. ..-+|...+.+... ++++||||+
T Consensus 71 ~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~-----~~~~~-----~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 71 PVHTIIRIDHDIASGILRTAKERQADLIIMGWHG-----STSLR-----DRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred ceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC-----CCCcc-----ceecCchHHHHHhc---CCCCEEEeC
Confidence 4444444334666655554444459999999998 33332 34789999999988 899999985
No 35
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.81 E-value=8.1e-07 Score=91.72 Aligned_cols=258 Identities=20% Similarity=0.287 Sum_probs=156.4
Q ss_pred HHHHHHHHhhcCCchHHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCchhHHHHHHHHHHhhcc
Q 003629 98 LLFFLFLVGLELDLSSIR---QNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVD-GESKVGYGQFIIFIGVSLSITA 170 (806)
Q Consensus 98 l~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~l~lg~~ls~Ts 170 (806)
..++.+.+|+|+..+.+. ++++++ ..-++.|+++|.++-. .+....+ ...+|.. +. .|+
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~----~~n~~~p~~~~GWaI-P~---------ATD 136 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYL----ALNAGDPATLEGWAI-PM---------ATD 136 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhh----eeecCChhhhcCcCc-cc---------HHH
Confidence 345778899999988875 344443 3345666777754322 2222110 0123322 11 233
Q ss_pred HHHHHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003629 171 FPVLARILADL-KLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVR 249 (806)
Q Consensus 171 ~~vv~~iL~el-~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 249 (806)
.+-...++.=+ +..++.+.-..++-+++||+-++++.++... .+-+ ..+...+.++. ...
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----------~~Ls---~~al~~a~~~i--~vL---- 197 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----------TDLS---MAALGIAALAI--AVL---- 197 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----------CCcc---HHHHHHHHHHH--HHH----
Confidence 33333333333 3478889999999999999999988886552 1122 22222221111 111
Q ss_pred HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCC----ChhHHHHHHHHHHHHhhh
Q 003629 250 PIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG----DFVVRLMKKIQDFVSGLL 325 (806)
Q Consensus 250 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~----~~~~~l~~~l~~~~~~~~ 325 (806)
..++| .. ++....+++...++.. .-...|+|..++..+.|+.+|-.. +--+++++.+.+.+..+.
T Consensus 198 ~~lN~---~~------v~~l~~Y~~~gviLW~--~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~I 266 (390)
T COG3004 198 AVLNR---LG------VRRLSPYLLVGVILWI--AVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFI 266 (390)
T ss_pred HHHHH---hC------chhhhHHHHHHHHHHH--HHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHH
Confidence 11222 21 1111133444444433 345789999999999999999422 223678889999999999
Q ss_pred hHHH-HHHhccccc---hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHhhcch
Q 003629 326 LPLY-FASSGLKTD---VAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGVLMNTKG 391 (806)
Q Consensus 326 ~plf-F~~~G~~id---l~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~m~~rG 391 (806)
+|+| |...|.+++ ...+.+ .+...+++..+++|.++.+..++.. +.+|++-...++ ++..|
T Consensus 267 lPlFaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIG 341 (390)
T COG3004 267 LPLFAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIG 341 (390)
T ss_pred HHHHHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhh
Confidence 9999 889998887 444443 3345667788999999998888763 567888777777 55555
Q ss_pred -hHHHHHHHhhccc
Q 003629 392 -LVELIVLNIGREK 404 (806)
Q Consensus 392 -~v~l~~~~~~~~~ 404 (806)
++++.+...+.+.
T Consensus 342 FTMSlFI~~LAf~~ 355 (390)
T COG3004 342 FTMSLFIASLAFGS 355 (390)
T ss_pred HHHHHHHHHHhcCC
Confidence 5677777777654
No 36
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.79 E-value=2e-08 Score=94.28 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=91.6
Q ss_pred ceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHH
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLE 541 (806)
Q Consensus 462 ~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~ 541 (806)
.|||+|+++.++...+++.+..++ +..+..++++|+++................ ...+.......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la--~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 67 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA--KRSGAEITLLHVIPPPPQYSFSAAEDEESE-------------EEAEEEEQARQ 67 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEESCHCHHHHHHHHHHHH-------------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH--HhhCCeEEEEEeeccccccccccccccccc-------------cccchhhhhhh
Confidence 489999999999999999998887 347789999999997665443211110000 00011111100
Q ss_pred ---HH-hhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCce
Q 003629 542 ---AY-NQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSV 617 (806)
Q Consensus 542 ---~~-~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V 617 (806)
.. ............ .+ .+..+.|++.+++.++|+||||.|++....+. .++++.+++++++||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~--------~~gs~~~~l~~~~~~pV 136 (140)
T PF00582_consen 68 AEAEEAEAEGGIVIEVVI-ES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERL--------LFGSVAEKLLRHAPCPV 136 (140)
T ss_dssp HHHHHHHHHTTSEEEEEE-EE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTS--------SSHHHHHHHHHHTSSEE
T ss_pred HHHHHHhhhccceeEEEE-Ee--eccchhhhhccccccceeEEEeccCCCCccCC--------CcCCHHHHHHHcCCCCE
Confidence 11 111223332222 33 58999999999999999999999997777776 79999999999999999
Q ss_pred EEE
Q 003629 618 AVL 620 (806)
Q Consensus 618 ~il 620 (806)
.|+
T Consensus 137 lvv 139 (140)
T PF00582_consen 137 LVV 139 (140)
T ss_dssp EEE
T ss_pred EEe
Confidence 976
No 37
>PRK09982 universal stress protein UspD; Provisional
Probab=98.79 E-value=2.3e-08 Score=95.53 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=88.2
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCC-C
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCD-G 719 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~ 719 (806)
.++|++|.+|+++++.|++.|.++|+.++++++++|++++..... ......... ...+..++..++.++++.++.. .
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELY-PGIYFPATE-DILQLLKNKSDNKLYKLTKNIQWP 80 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhc-hhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 368999999999999999999999999999999999986531110 000000000 0011122333345555554422 2
Q ss_pred cEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEee
Q 003629 720 SVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQ 795 (806)
Q Consensus 720 ~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq 795 (806)
.+.+.- ...+..+++....+..++||||||+|+ +|+.+ |- | +.+-+... ++++||||.-
T Consensus 81 ~~~~~v-~~G~p~~~I~~~A~~~~aDLIVmG~~~------~~~~~-~~-----~-va~~V~~~---s~~pVLvv~~ 139 (142)
T PRK09982 81 KTKLRI-ERGEMPETLLEIMQKEQCDLLVCGHHH------SFINR-LM-----P-AYRGMINK---MSADLLIVPF 139 (142)
T ss_pred cceEEE-EecCHHHHHHHHHHHcCCCEEEEeCCh------hHHHH-HH-----H-HHHHHHhc---CCCCEEEecC
Confidence 233222 346777766666655569999999754 77877 42 5 77777777 8999999964
No 38
>PRK15005 universal stress protein F; Provisional
Probab=98.76 E-value=8.2e-08 Score=91.71 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=86.7
Q ss_pred ceEEEEecCCcc--HHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCC--CccccchHHHHHHHHHhcC
Q 003629 642 KRVCIVFLGGPD--DRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDIS--TENGISLDEAAVDDFMRKC 717 (806)
Q Consensus 642 ~~i~v~~~Gg~d--dreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~~~ 717 (806)
++|++|.+|+++ ++.|+++|.++|+..+++++++|++++.... .. ......... .++.++..++.++++.++.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYY--AS-LGLAYSAELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccc--cc-ccccccccchHHHHHHHHHHHHHHHHHHHh
Confidence 579999999998 4799999999999999999999999753111 00 000000000 0112223334555555442
Q ss_pred C-CcEEEEE-EEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEe
Q 003629 718 D-GSVECEE-KVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQ 794 (806)
Q Consensus 718 ~-~~v~~~e-~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvq 794 (806)
. ..+.+.. ....+..+.+....+..++||||||+|+ .|+.+ | -+|...+.+... ++|+||||+
T Consensus 80 ~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~------~~~~~-~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 80 KLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR------PDITT-Y----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC------CCchh-e----eecchHHHHHHh---CCCCEEEeC
Confidence 2 2222222 2235566655544444459999999886 46655 3 579999999998 999999984
No 39
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.75 E-value=3.7e-08 Score=94.20 Aligned_cols=134 Identities=7% Similarity=0.018 Sum_probs=84.3
Q ss_pred ceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHH
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLE 541 (806)
Q Consensus 462 ~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~ 541 (806)
.|||+|+++.++....++.+..++ +..+.+++++|+.+-........ . .....-.. ....++..+.++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~----~-~~~~~~~~-----~~~~~~~~~~l~ 71 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA--RPYNAKVSLIHVDVNYSDLYTGL----I-DVNLGDMQ-----KRISEETHHALT 71 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH--HhhCCEEEEEEEccChhhhhhhh----h-hcchHHHH-----HHHHHHHHHHHH
Confidence 479999999999888888887777 33567899999843111100000 0 00000000 011233334445
Q ss_pred HHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 542 AYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 542 ~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
.+.+..++.+...... ..+.++.|++.|++.++||||||.|++ +. . .++++.++|+++|||||.++
T Consensus 72 ~~~~~~~~~~~~~~~~--~G~p~~~I~~~a~~~~~DLIV~Gs~~~----~~---~----~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 72 ELSTNAGYPITETLSG--SGDLGQVLVDAIKKYDMDLVVCGHHQD----FW---S----KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHhCCCCceEEEEE--ecCHHHHHHHHHHHhCCCEEEEeCccc----HH---H----HHHHHHHHHHhhCCCCEEEe
Confidence 5444444443222222 257899999999999999999999963 11 1 26799999999999999987
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=98.73 E-value=4.2e-08 Score=93.72 Aligned_cols=133 Identities=9% Similarity=0.105 Sum_probs=83.7
Q ss_pred ceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHH
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLE 541 (806)
Q Consensus 462 ~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~ 541 (806)
.+||+|+++.++....++-+..++ ++.+.+++++|+++......+.. .....+. ..+ ...++..+.++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~--~~~~~~~--~~~------~~~~~~~~~l~ 71 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGI--YFPATED--ILQ------LLKNKSDNKLY 71 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhh--hccchHH--HHH------HHHHHHHHHHH
Confidence 479999999999999888888877 45778999999987432111000 0000000 000 01122222233
Q ss_pred HHhhc-CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 542 AYNQL-RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 542 ~~~~~-~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
...+. ....++..+.. .+.++.|++.|++.++||||||.| +.+..+ .++ +.++|+++|+|||.|+
T Consensus 72 ~~~~~~~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~---------~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 72 KLTKNIQWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFINR---------LMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHHhcCCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHHHH---------HHH-HHHHHHhcCCCCEEEe
Confidence 33222 22233333333 589999999999999999999976 443333 344 9999999999999987
No 41
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.68 E-value=1.1e-07 Score=89.14 Aligned_cols=133 Identities=22% Similarity=0.294 Sum_probs=92.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHH-----HHHhc
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVD-----DFMRK 716 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~~~ 716 (806)
+||+++++|+++++.|+++|.++|...+.+++++|+.+.. ..... .... ........++.... +....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~--~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPP--PQYSF--SAAE---DEESEEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESC--HCHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccc--ccccc--cccc---ccccccccchhhhhhhHHHHHHhh
Confidence 6899999999999999999999999999999999999764 21000 0000 00000000000000 11111
Q ss_pred CCCcEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEe
Q 003629 717 CDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQ 794 (806)
Q Consensus 717 ~~~~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvq 794 (806)
.+....+......++.+.+....+..++|++|||+++ ..++.+ | -+|...+-++.. ++++||||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~-----~~~~~~-~----~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 76 EGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG-----RSGLER-L----LFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp HTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS-----TTSTTT-S----SSHHHHHHHHHH---TSSEEEEEE
T ss_pred hccceeEEEEEeeccchhhhhccccccceeEEEeccC-----CCCccC-C----CcCCHHHHHHHc---CCCCEEEeC
Confidence 3456677777788888877777777679999999998 455555 3 489999999998 899999984
No 42
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.68 E-value=9.7e-08 Score=88.72 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=84.9
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcC-CCcE
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKC-DGSV 721 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v 721 (806)
||++|++|++.+++|+++|.++|++.+.+++++|+.++. .. ...+..++.++++++.. ...+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~--~~---------------~~~~~~~~~l~~~~~~~~~~~~ 63 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPR--LN---------------RLSEAERRRLAEALRLAEELGA 63 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCc--cc---------------cCCHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999998754 10 01111233444444331 1123
Q ss_pred EEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCC-cccEEEE
Q 003629 722 ECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGI-LASVLVI 793 (806)
Q Consensus 722 ~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~-~~svlvv 793 (806)
.+......|..+.+....+..++|++|+|+++ .+++.+ + -+|...+-++.. . ++.|||+
T Consensus 64 ~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~-----~~~~~~-~----~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 64 EVVTLPGDDVAEAIVEFAREHNVTQIVVGKSR-----RSRWRE-L----FRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred EEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCC-----CchHHH-H----hcccHHHHHHHh---CCCCeEEEe
Confidence 34443345666655555555559999999998 555665 3 779999999987 5 8899986
No 43
>PRK15456 universal stress protein UspG; Provisional
Probab=98.66 E-value=2.1e-07 Score=88.89 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=85.4
Q ss_pred CceEEEEecCCc--cHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccC--CCccccchHHHHHHHHHhc
Q 003629 641 PKRVCIVFLGGP--DDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDI--STENGISLDEAAVDDFMRK 716 (806)
Q Consensus 641 ~~~i~v~~~Gg~--ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~~ 716 (806)
.++|++|.+|++ .++.|+++|.++|+.. .+++++|++++.... .. .....+. ..+..++..++.++++.++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASL--SL--HRFAADVRRFEEHLQHEAEERLQTMVSH 76 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccc--cc--cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 368999999995 7999999999999875 599999998753110 00 0000000 0112233344556666544
Q ss_pred CC-C--cEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003629 717 CD-G--SVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVI 793 (806)
Q Consensus 717 ~~-~--~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvv 793 (806)
.. . ++...- ...+..+++....+..++||||||+|+ . |+.+ | -+|...+-++.. ++|+||||
T Consensus 77 ~~~~~~~v~~~v-~~G~~~~~I~~~a~~~~~DLIVmG~~g-----~-~~~~-~----llGS~a~~v~~~---a~~pVLvV 141 (142)
T PRK15456 77 FTIDPSRIKQHV-RFGSVRDEVNELAEELGADVVVIGSRN-----P-SIST-H----LLGSNASSVIRH---ANLPVLVV 141 (142)
T ss_pred hCCCCcceEEEE-cCCChHHHHHHHHhhcCCCEEEEcCCC-----C-Cccc-e----ecCccHHHHHHc---CCCCEEEe
Confidence 21 2 233222 234556655444444459999999998 3 4544 2 579999999998 99999998
Q ss_pred e
Q 003629 794 Q 794 (806)
Q Consensus 794 q 794 (806)
+
T Consensus 142 ~ 142 (142)
T PRK15456 142 R 142 (142)
T ss_pred C
Confidence 4
No 44
>PRK10116 universal stress protein UspC; Provisional
Probab=98.62 E-value=1.6e-07 Score=89.48 Aligned_cols=137 Identities=12% Similarity=0.170 Sum_probs=84.5
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCc
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGS 720 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 720 (806)
.++|+++++++++++.||++|.++|+..++++++++++++.. .. .. ..........+..++..++.++++..+.+..
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPE-MY-NQ-FAAPMLEDLRSVMQEETQSFLDKLIQDADYP 79 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcc-cc-hh-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999999999985420 10 00 0000000001111122234455544433222
Q ss_pred EEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEee
Q 003629 721 VECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQ 795 (806)
Q Consensus 721 v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq 795 (806)
..-......+..+++....+..++||+|+|+++ .+++.+ | +..++-++.. ++++||||.-
T Consensus 80 ~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~-----~~~~~~-~------~s~a~~v~~~---~~~pVLvv~~ 139 (142)
T PRK10116 80 IEKTFIAYGELSEHILEVCRKHHFDLVICGNHN-----HSFFSR-A------SCSAKRVIAS---SEVDVLLVPL 139 (142)
T ss_pred eEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc-----chHHHH-H------HHHHHHHHhc---CCCCEEEEeC
Confidence 222222345556644443333359999999999 666766 4 2357778887 9999999963
No 45
>PRK10116 universal stress protein UspC; Provisional
Probab=98.62 E-value=2.6e-07 Score=88.05 Aligned_cols=134 Identities=11% Similarity=0.116 Sum_probs=87.2
Q ss_pred ceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHH
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLE 541 (806)
Q Consensus 462 ~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~ 541 (806)
.+||++++..++....++.+..++ ++.+..++++|+++...... .+ ..... +. .. ....++..+.++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~-~~-~~~~~-~~---~~-----~~~~~~~~~~l~ 70 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA--RPVNGKISLITLASDPEMYN-QF-AAPML-ED---LR-----SVMQEETQSFLD 70 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH--HHhCCEEEEEEEccCcccch-hh-hHHHH-HH---HH-----HHHHHHHHHHHH
Confidence 479999999999888888888887 33566889999986532111 10 00000 00 00 011223334444
Q ss_pred HHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 542 AYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 542 ~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
.+.+..+++...... ...+..+.|++.|++.++||||||.|++.+..+. .++..+|++++||||.++
T Consensus 71 ~~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~----------~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 71 KLIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA----------SCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HHHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH----------HHHHHHHHhcCCCCEEEE
Confidence 444444444322222 3478899999999999999999999987544332 367889999999999988
No 46
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.62 E-value=3.6e-07 Score=84.57 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=91.9
Q ss_pred eEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHHHH
Q 003629 463 KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASLEA 542 (806)
Q Consensus 463 riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af~~ 542 (806)
++|+|+.+.+....+++.+..++ +..+.+++++|+.+-.+...... .+. .. ...++.++.+..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a--~~~~~~i~~l~v~~~~~~~~~~~--~~~--------~~-----~~~~~~l~~~~~ 63 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA--RRLGAELVLLHVVDPPPSSAAEL--AEL--------LE-----EEARALLEALRE 63 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH--HhcCCEEEEEEEecCCCCcchhH--HHH--------HH-----HHHHHHHHHHHH
Confidence 58999999999999999999988 44678999999987544332210 000 00 112333333333
Q ss_pred HhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 543 YNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 543 ~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
.....+++++.....+ +..++|++.+++.++|++|+|++++....+. .+++..+++++++||||.++
T Consensus 64 ~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~--------~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 64 ALAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL--------LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee--------eeccHHHHHHhCCCCCEEeC
Confidence 3233566666655444 3489999999999999999999988665554 68889999999999999863
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.61 E-value=1.7e-07 Score=89.57 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=84.1
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCc
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGS 720 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 720 (806)
.++|++|.+|+++++.||++|..+|+..+++++++|+.++..... ....... .....+..++..++.++++..+.+..
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLY-TGLIDVN-LGDMQKRISEETHHALTELSTNAGYP 80 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhh-hhhhhcc-hHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999999999999853210010 0000000 00000111112223344444332223
Q ss_pred EEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEEee
Q 003629 721 VECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVIQQ 795 (806)
Q Consensus 721 v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvvqq 795 (806)
+........+..+++....+..++||||+|+|+ .++ + .+|-..+-+... ++|+||||+.
T Consensus 81 ~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~------~~~-~------~lgSva~~v~~~---a~~pVLvv~~ 139 (144)
T PRK15118 81 ITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ------DFW-S------KLMSSARQLINT---VHVDMLIVPL 139 (144)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc------cHH-H------HHHHHHHHHHhh---CCCCEEEecC
Confidence 222223346676655555544459999999997 222 2 267888888888 9999999986
No 48
>PRK11175 universal stress protein UspE; Provisional
Probab=98.54 E-value=3.3e-07 Score=99.34 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=90.7
Q ss_pred ceEEEEecCCCCh-------hhHHHHHHhhhcCCCC-CceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcc
Q 003629 462 FKIQACVHGPENV-------PALINLTELIRTTEGS-TLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSH 533 (806)
Q Consensus 462 ~riLv~v~~~~~~-------~~li~l~~~~~~~~~~-p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~ 533 (806)
.+||++++..+.. ..+++.+..++. .. ...++++|+.+........-... .. + +. +.....
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~--~~~~a~l~ll~v~~~~~~~~~~~~~~---~~--~--~~--~~~~~~ 221 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAE--QLNHAEVHLVNAYPVTPINIAIELPE---FD--P--SV--YNDAIR 221 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHh--hCcCCceEEEEEecCcchhccccccc---cc--h--hh--HHHHHH
Confidence 5899999987543 357777777763 33 56899999987443211000000 00 0 00 000112
Q ss_pred hHHHHHHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcC
Q 003629 534 DQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNA 613 (806)
Q Consensus 534 ~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~a 613 (806)
++..+.++.+.+..+++........ .+..+.|++.|+++++|+|+||.|++.+..+. .+|++.++|++++
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~--------llGS~a~~v~~~~ 291 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAA--------FLGNTAEHVIDHL 291 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCcce--------eecchHHHHHhcC
Confidence 2333444444443344332222222 57889999999999999999999999888777 7999999999999
Q ss_pred CCceEEEEcCCC
Q 003629 614 PCSVAVLVDRGF 625 (806)
Q Consensus 614 pc~V~ilvdrg~ 625 (806)
||||.++..+|+
T Consensus 292 ~~pVLvv~~~~~ 303 (305)
T PRK11175 292 NCDLLAIKPDGY 303 (305)
T ss_pred CCCEEEEcCCCC
Confidence 999998844443
No 49
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.18 E-value=1.6e-05 Score=73.42 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=83.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhc---CCC
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRK---CDG 719 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~ 719 (806)
+|++++.+++..+.++++|.++|+..+.+++++++.++.+... . ...+...+..++.++++... .+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~--~--------~~~~~~~~~~~~~l~~~~~~~~~~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA--A--------ELAELLEEEARALLEALREALAEAGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc--h--------hHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999999986541110 0 00112333445666666654 233
Q ss_pred cEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003629 720 SVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVI 793 (806)
Q Consensus 720 ~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvv 793 (806)
++.+.-.. .+..+.+....+..++|++|+|+++ ..++.+ .-.|.+.+.|... ++++||++
T Consensus 71 ~~~~~~~~-~~~~~~i~~~~~~~~~dlvvig~~~-----~~~~~~-----~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 71 KVETVVLE-GDPAEAILEAAEELGADLIVMGSRG-----RSGLRR-----LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred ceEEEEec-CCCHHHHHHHHHHcCCCEEEEcCCC-----CCccce-----eeeccHHHHHHhC---CCCCEEeC
Confidence 44444332 3334444433333349999999998 222222 3568899999987 78888875
No 50
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.98 E-value=6.6e-05 Score=71.82 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=89.1
Q ss_pred ceEEEEec-CCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHH
Q 003629 462 FKIQACVH-GPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540 (806)
Q Consensus 462 ~riLv~v~-~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af 540 (806)
.+++++++ +.+......+.+..... .....++++++++..+........... .. ....... .....++..+..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~ 79 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAK--RLGAPLILLVVIDPLEPTALVSVALAD-AP-IPLSEEE--LEEEAEELLAEA 79 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHH--hcCCeEEEEEEeccccccccccccccc-ch-hhhhHHH--HHHHHHHHHHHH
Confidence 47889888 88777777777766663 345566677777755533322100000 00 0000000 012234555555
Q ss_pred HHHhhcCceE-EEEeEeeccCCch-HHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceE
Q 003629 541 EAYNQLRRVT-VRHSTAISALSTM-HEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVA 618 (806)
Q Consensus 541 ~~~~~~~~v~-v~~~~~vs~~~~~-~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ 618 (806)
+...+...+. ++....-. +. .+.|+..|.+.++|+|+||.+++++.++. .+|++.++|++++||||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~--------llGsvs~~v~~~~~~pVl 148 (154)
T COG0589 80 KALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL--------LLGSVAEKVLRHAPCPVL 148 (154)
T ss_pred HHHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce--------eeehhHHHHHhcCCCCEE
Confidence 5544444443 23333333 44 69999999999999999999988877765 799999999999999999
Q ss_pred EE
Q 003629 619 VL 620 (806)
Q Consensus 619 il 620 (806)
++
T Consensus 149 vv 150 (154)
T COG0589 149 VV 150 (154)
T ss_pred EE
Confidence 87
No 51
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.97 E-value=0.0015 Score=69.02 Aligned_cols=255 Identities=13% Similarity=0.102 Sum_probs=142.3
Q ss_pred HHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHH
Q 003629 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARI 177 (806)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 177 (806)
+..++|-.|-++|++...+..||...+-+.-+.+.++++..++.+++... -...+.+.+-.+++.+.-..=..+
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g------~~Gls~laiiaa~~~~Ng~ly~al 124 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG------IFGLSGLAIVAAMSNSNGGLYAAL 124 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc------ccchHHHHHHHHHhcCcHHHHHHH
Confidence 45688999999999999888888888888888888888888887776421 112345556666666666677778
Q ss_pred HHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 178 LADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVAR 257 (806)
Q Consensus 178 L~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 257 (806)
..|++ -+++.|-. .+++ +. .++. ..++. +.. .++ .
T Consensus 125 ~~~yG-~~~d~gA~-------------~~~s----l~----------~GPf---~tm~a---Lga----------~gL-A 159 (312)
T PRK12460 125 MGEFG-DERDVGAI-------------SILS----LN----------DGPF---FTMLA---LGA----------AGL-A 159 (312)
T ss_pred HHHcC-CHhhhhHH-------------hhhh----hc----------cCcH---HHHHH---HHH----------HHH-h
Confidence 88888 45455522 2221 11 1111 11111 000 011 1
Q ss_pred HcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhcccc
Q 003629 258 QCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKT 337 (806)
Q Consensus 258 ~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~i 337 (806)
+. | ....+. .+=+++.|+++.|-. +.+.+.+++- ..+.+|+|-+..|.++
T Consensus 160 ~i-p---------~~~lv~----------------lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~l 209 (312)
T PRK12460 160 NI-P---------IMALVA----------------ALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGI 209 (312)
T ss_pred cC-C---------hHHHHH----------------HHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCe
Confidence 11 1 000000 223456667776622 2233444444 3458899999999999
Q ss_pred chhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH--HHhhcchhHHHHHHHhhcccCCCCHHHHHHH
Q 003629 338 DVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALG--VLMNTKGLVELIVLNIGREKKVLNDEMFAIL 415 (806)
Q Consensus 338 dl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--l~m~~rG~v~l~~~~~~~~~~ii~~~~~~~l 415 (806)
|++++.+. .+.- +++.+..++.-...+++..+++|.+.+.+..+| .+-+.-|- + +++......+- -.+.-+..
T Consensus 210 nl~~I~~~-G~~G-IlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgp-A-AVaAadP~~~~-~~~~Ataq 284 (312)
T PRK12460 210 NLSMLLQA-GLAG-ILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATP-L-AIAAADPSLAP-VAAAATAQ 284 (312)
T ss_pred eHHHHHHh-ChHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHH-H-HHHHhchhHHH-HHHHHHHH
Confidence 99998762 3332 223333344455666667788898888877777 43222222 1 22222111111 12345555
Q ss_pred HHHHHHHHHhhHHHH-HHHhcccc
Q 003629 416 VVMALFTTFMTTPMV-MAIYKPLR 438 (806)
Q Consensus 416 vl~v~v~t~i~~pl~-~~l~~~~~ 438 (806)
+.++++.|.+..|++ .|.+|+.+
T Consensus 285 vaa~vivTail~P~~t~~~~k~~~ 308 (312)
T PRK12460 285 VAASVIVTAILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666666655 56665543
No 52
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.85 E-value=0.0001 Score=80.68 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=67.0
Q ss_pred CCceEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhc-
Q 003629 640 VPKRVCIVFLGGPDDRRALDLGGRMAENS--GVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRK- 716 (806)
Q Consensus 640 ~~~~i~v~~~Gg~ddreaL~~a~~ma~~~--~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~- 716 (806)
..+||++|++|++.++.|+++|..+|+.. +++++++|+++...... . .+...+..++.+++.++.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~--~----------~~~~~~~~eelle~~~~~~ 71 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP--E----------GQDELAAAEELLERVEVWA 71 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc--c----------hhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999884 69999999997541110 0 011112222233333322
Q ss_pred ---C---CCcEEEEEEEe---------CChHHHHHHhcccCCCcEEEEccCC
Q 003629 717 ---C---DGSVECEEKVM---------GTVKDEVLKIGQSRDYELVVAGKGR 753 (806)
Q Consensus 717 ---~---~~~v~~~e~~v---------~~~~~~~~~i~~~~~~DLiivG~~~ 753 (806)
. ...+.+...++ .+.++++...++..++||||||..-
T Consensus 72 ~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 72 TEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred HHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 1 12344444443 4778877666666669999999985
No 53
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.71 E-value=0.1 Score=58.03 Aligned_cols=310 Identities=19% Similarity=0.185 Sum_probs=148.5
Q ss_pred CCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHH
Q 003629 52 RQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITL 131 (806)
Q Consensus 52 ~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 131 (806)
.+|.++-.++.|+++... |.++ ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+..=+.+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsnl--gli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNL--GLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHHC--CCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 478888888888988863 4331 1223456677888777777778878999999999988776433333 34
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHh-hccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003629 132 PFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLS-ITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALA 210 (806)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls-~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~ 210 (806)
..++|..+++.+.....+...|. ..+.+.|.-.. ..-+..+... ++ .+ ..+.-+....|.++.-+.+.++
T Consensus 94 g~viG~~va~~l~~~~l~~~~wk--~ag~l~gsyiGGs~N~~Av~~a---l~---~~-~~~~~a~~aaDnv~~~~~~~~l 164 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPEGWK--IAGMLAGSYIGGSVNFVAVAEA---LG---VS-DSLFAAALAADNVVMALWFAFL 164 (378)
T ss_pred HHHHHHHHHHHHHhhcccchHHH--HHHHHHhcccCchhHHHHHHHH---HC---CC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556656655533210011111 11122221111 1112222332 33 12 2333344444555554444444
Q ss_pred HHHhhccC----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCchHHHHHHHHHHHHHHHHH
Q 003629 211 VSLAGKAS----GTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQC-SSDNDLVDDAYICLTLVGVMVSGFLT 285 (806)
Q Consensus 211 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~~~~e~~~~~~l~~~l~~~~~a 285 (806)
..+..... ....++.. .... -.-..+.. .++.++.. ..+...+...+....++
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s 222 (378)
T PF05684_consen 165 LALPPFARKFDRWTKADTSS-IEAL--------------------EEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALS 222 (378)
T ss_pred HHHhhhhHHhhhccCCCccc-cchh--------------------hhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHH
Confidence 44332000 00000000 0000 00000000 00001111 11222222222222222
Q ss_pred HHHch-------------hHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHH
Q 003629 286 DLIGI-------------HAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLV 352 (806)
Q Consensus 286 ~~~g~-------------~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~ 352 (806)
+.++- -.++-....|++... +|..+.+ ..-+.+ ..+++-+||+.+|++.|+..+.+.+ ..+
T Consensus 223 ~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap---~~~ 296 (378)
T PF05684_consen 223 HALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAP---SLF 296 (378)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhH---HHH
Confidence 21111 012223334444432 4444443 444555 5677788999999999999987622 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH
Q 003629 353 LVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND 409 (806)
Q Consensus 353 ~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~ 409 (806)
++.++.+..-.+..+..++++|+|+.+-..-+-. |.-|-........++...+..+
T Consensus 297 l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A-nIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 297 LFGFIILAIHLLLMLILGKLFKIDLFELLVASNA-NIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc-ccCCcchHHHHHHhcCCccHHH
Confidence 3444556677888889999999999887766652 4444433333333444444433
No 54
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.60 E-value=0.018 Score=62.31 Aligned_cols=158 Identities=14% Similarity=0.216 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCch------------------------HH-HHHHHHHHHHHHHHHHHHc-----hh
Q 003629 242 AFMLIVVRPIMDWVARQCSSDNDLVDD------------------------AY-ICLTLVGVMVSGFLTDLIG-----IH 291 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~~~~~~~~~e------------------------~~-~~~~l~~~l~~~~~a~~~g-----~~ 291 (806)
+..+.+..|+.+|+.+|+.-+.++.++ .. +.++...+.+.+++.++++ +.
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 444566789999999886211111111 01 2223333333445677665 56
Q ss_pred HhHHHHHHHhhcCCCCChh--HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003629 292 AIFGAFVFGLTIPKGGDFV--VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVM 369 (806)
Q Consensus 292 ~~lgafvaGl~l~~~~~~~--~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~ 369 (806)
...++++.|+++.|.-+.. .++.++.-+...++-+-+|.+..=|++.+..+.+ ...++.+++.+-..+--+.+.+..
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lpl~viL~vQ~i~m~lfa~fvt 328 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALPLLVILAVQTIVMALFAIFVT 328 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999998632211 1133333333467888888888889999888875 234444444444444455566667
Q ss_pred HHHhCCChHHHHHHHHHhhc-chhHHHHHHHh
Q 003629 370 ALLCMIPVRESLALGVLMNT-KGLVELIVLNI 400 (806)
Q Consensus 370 ~~~~~~~~~~~~~lgl~m~~-rG~v~l~~~~~ 400 (806)
.+..|-++..+...+.-++. -|...-+++++
T Consensus 329 fr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 329 FRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 77888776666543332222 23444455554
No 55
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.57 E-value=0.12 Score=56.18 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=79.0
Q ss_pred hhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchH-HHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHH
Q 003629 48 IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTP-ILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIAL 126 (806)
Q Consensus 48 ~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 126 (806)
+++.+++..+--++.|+++|+......+. .. .+..+ .-+.+-++|++ +.|.++++.++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~--~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EK--KRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hc--cchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 34568999998899999999754211111 01 01111 23456667766 56999999999999998877777
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhcCCCCCchhHHHHHHHHH--Hh-hccHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Q 003629 127 AGITLPFLLGAGVS-LFLQKAVDGESKVGYGQFIIFIGVS--LS-ITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIA 202 (806)
Q Consensus 127 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~lg~~--ls-~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~ 202 (806)
..+...+.+++.++ ..++.+. ..++++++- .+ .++...+.+.+ | .+.+--..+++.-.+=+.+
T Consensus 97 ~~v~~~~~~~~~~g~k~l~l~~---------~~~~Lia~GtsICGaSAi~A~a~~i---~-A~~~~~a~ava~V~lfgt~ 163 (335)
T TIGR00698 97 LILTSTFFLTVFLGSSRLKLDK---------QMSILLGAGSSICGAAAVAAIEPVI---K-AEKEKVSVAIAIVVIFGTT 163 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHcchhHHHHHHHHHhcccc---C-CCccceeeeehHHHHHHHH
Confidence 66666666655554 3443321 233444332 22 23333333333 2 2333334455555555555
Q ss_pred HHHHHHHHHH
Q 003629 203 AWILLALAVS 212 (806)
Q Consensus 203 ~~~ll~~~~~ 212 (806)
+.+++-.+..
T Consensus 164 am~l~P~l~~ 173 (335)
T TIGR00698 164 GIFLYPSIYH 173 (335)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 56
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=97.46 E-value=0.067 Score=59.12 Aligned_cols=334 Identities=17% Similarity=0.221 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhh---cCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHH-
Q 003629 30 LIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGIL---LGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLV- 105 (806)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGil---lGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~- 105 (806)
++..++++.+++.+++++=+|+ |-+=-|+=+|.+ ++|+.+-. ..++|++..+..+.+-+-.=.+.+|.+
T Consensus 30 m~g~~a~~~v~G~~l~~IG~ri--Pi~k~yiGGg~il~~f~ps~Lv~-----~~~ip~~~~~~v~~fm~~~~Fl~ffIa~ 102 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRI--PILKDYIGGGAILCIFVPSALVY-----FGLIPESVVEAVTNFMKGSNFLYFFIAA 102 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC--hhhhccCChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHhccCChHHHHHHH
Confidence 3445556666666777666653 333333333322 34544321 124454444444333322111122222
Q ss_pred ---h--hcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHh-----hccHHHHH
Q 003629 106 ---G--LELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLS-----ITAFPVLA 175 (806)
Q Consensus 106 ---G--le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls-----~Ts~~vv~ 175 (806)
| +.||.+.+.|...|-+...+.+.+..++++.+++..++..+ ....+.+..-+. .-+.|...
T Consensus 103 LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~--------~~~i~~i~lPIMgGG~GaGavPLS~ 174 (414)
T PF03390_consen 103 LIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF--------KDAIFYIVLPIMGGGMGAGAVPLSQ 174 (414)
T ss_pred HHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHhhhcCCCccccHhHHHH
Confidence 3 48999999999999888888888888888888888887654 122222322221 12233222
Q ss_pred HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCC------C---C----chHHHHHHHHHHHHHH
Q 003629 176 RILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASG-TESH------H---P----SSLISIWVLISGVAFV 241 (806)
Q Consensus 176 ~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~-~~~~------~---~----~~~~~~~~~~~~~~~~ 241 (806)
-.=+-.+.-.++.-..++.+.++..+++++.-+++-.+...... ++.+ + . .....-..-...-.+.
T Consensus 175 ~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Glll 254 (414)
T PF03390_consen 175 IYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLL 254 (414)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHH
Confidence 22222343455666677888889999999888766654321100 0000 0 0 0000011122223344
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q 003629 242 AFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFV 321 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~ 321 (806)
++.+|.++.++..+. . .+. +.+.++ ...+...+|+ +| +.-++-..++..+.
T Consensus 255 a~~~y~~G~ll~~~i-~-------ih~-~a~mIi-----~~~i~K~~~l------------vP---~~~e~~a~~~~~f~ 305 (414)
T PF03390_consen 255 ACSFYILGVLLSKLI-G-------IHA-YAWMII-----LVAIVKAFGL------------VP---ESLEEGAKQWYKFF 305 (414)
T ss_pred HHHHHHHHHHHHHhc-C-------CcH-HHHHHH-----HHHHHHHhCc------------CC---HHHHHHHHHHHHHH
Confidence 455555555555444 1 121 222222 2223333443 33 23333445555555
Q ss_pred HhhhhHHHHHHhccc-cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhhcchh-HHHHHH
Q 003629 322 SGLLLPLYFASSGLK-TDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRES-LALGVLMNTKGL-VELIVL 398 (806)
Q Consensus 322 ~~~~~plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~-~~lgl~m~~rG~-v~l~~~ 398 (806)
..-+.+-..+-+|+. +|++.+.+..++.. +++++..+++-.+++++..++.|+-+-|+ +..|++|+.+|. -+++++
T Consensus 306 ~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVL 384 (414)
T PF03390_consen 306 SKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVL 384 (414)
T ss_pred HHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchhe
Confidence 666666677788988 99998887556654 44556667778889999999999877765 778878888764 557777
Q ss_pred HhhcccCCCC
Q 003629 399 NIGREKKVLN 408 (806)
Q Consensus 399 ~~~~~~~ii~ 408 (806)
+.+...+++.
T Consensus 385 sAa~RM~Lmp 394 (414)
T PF03390_consen 385 SAANRMELMP 394 (414)
T ss_pred ehhhhccccc
Confidence 6666665554
No 57
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.41 E-value=0.0028 Score=60.40 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=89.1
Q ss_pred CCceEEEEec-CCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCcccccccc--CCCccccchHHHHHHHHHhc
Q 003629 640 VPKRVCIVFL-GGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSD--ISTENGISLDEAAVDDFMRK 716 (806)
Q Consensus 640 ~~~~i~v~~~-Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~~~~ 716 (806)
...+|+++++ |.+..+.|++.+...+...+..++++++.+...... .......... .......+..++.+++.+..
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTA-LVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccc-ccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3468999999 999999999999999999999999888875431110 0000000000 00011133334555555443
Q ss_pred ---CCCcEEEEEEEeCCh-HHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEE
Q 003629 717 ---CDGSVECEEKVMGTV-KDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLV 792 (806)
Q Consensus 717 ---~~~~v~~~e~~v~~~-~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlv 792 (806)
......-.+....++ .+++.......++||+|||.++ .+++.+ --+|...+.++.. ++++|||
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g-----~~~l~~-----~llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 83 AEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG-----RSGLSR-----LLLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred HHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC-----Cccccc-----eeeehhHHHHHhc---CCCCEEE
Confidence 222211223334455 4655555555569999999987 344433 5789999999998 9999999
Q ss_pred Eee
Q 003629 793 IQQ 795 (806)
Q Consensus 793 vqq 795 (806)
++.
T Consensus 150 v~~ 152 (154)
T COG0589 150 VRS 152 (154)
T ss_pred Ecc
Confidence 986
No 58
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.35 E-value=0.025 Score=59.61 Aligned_cols=85 Identities=20% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHH
Q 003629 97 GLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLAR 176 (806)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 176 (806)
-+..++|-.|-++|++...+..||...+-+.-+++.++++.+++.+++.... ..+.-...+.+.+-++++.+....=..
T Consensus 50 iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi-~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 50 IIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGI-QSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcccc-ccccccchHHHHHHHHHhcCCHHHHHH
Confidence 3556889999999999999999999988888898888888888877754310 000012234566666666677777777
Q ss_pred HHHhcc
Q 003629 177 ILADLK 182 (806)
Q Consensus 177 iL~el~ 182 (806)
+..|++
T Consensus 129 L~~~yG 134 (314)
T PF03812_consen 129 LMGQYG 134 (314)
T ss_pred HHHHhC
Confidence 777777
No 59
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.25 E-value=0.17 Score=56.42 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=58.3
Q ss_pred chhHhHHHHHHHhhcCCCCChh--HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHH-HH
Q 003629 289 GIHAIFGAFVFGLTIPKGGDFV--VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKI-LG 365 (806)
Q Consensus 289 g~~~~lgafvaGl~l~~~~~~~--~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~-~~ 365 (806)
.+....+|++.|+++.+-.+.. .++.++.-+...++.+-+|.+..=+++++..+.+ .+.-++++++..++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999998622211 1122223333366677788888888999999876 44444444444444444 44
Q ss_pred HHHHHHHhCCChHHHHHHHHHh
Q 003629 366 TFVMALLCMIPVRESLALGVLM 387 (806)
Q Consensus 366 ~~l~~~~~~~~~~~~~~lgl~m 387 (806)
.++..+..|-+ .|+..++-..
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ag~ 342 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLCAGH 342 (398)
T ss_pred HHHhHHhccch-HHHHHHhccc
Confidence 45666667766 7776644433
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.23 E-value=0.27 Score=54.50 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=54.8
Q ss_pred hhHhHHHHHHHhhcCCCC------ChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 003629 290 IHAIFGAFVFGLTIPKGG------DFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKI 363 (806)
Q Consensus 290 ~~~~lgafvaGl~l~~~~------~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~ 363 (806)
+....++++.|+++.+.. +..++..+++ .++.+-+|.+..=+++++..+.+ ...++++++++-.++.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 457799999999987521 1233334444 45555666677777888888876 233333333333334444
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhh
Q 003629 364 LGTFVMALLCMIPVRESLALGVLMN 388 (806)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~lgl~m~ 388 (806)
...++..+..|-++ |+..++.+..
T Consensus 322 f~~fv~fr~~gkdy-daavm~~G~~ 345 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVMSAGFC 345 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHHhhhhh
Confidence 55566677777775 6666555433
No 61
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.20 E-value=0.34 Score=51.88 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHhcc---chhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH
Q 003629 90 LESVASIGLLFFLFLVGLELDLSSIRQNG---KSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSL 166 (806)
Q Consensus 90 l~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~l 166 (806)
++..-.+.+.++||..|+.+..+++++.. |........++++--+++++++..+.. +.-+..|..+
T Consensus 36 ~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l-----------~~~l~~Gl~l 104 (319)
T COG0385 36 LGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPL-----------PPELAVGLLL 104 (319)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CHHHHHhHHh
Confidence 44345788999999999999999998644 444444444444433445554444431 1124444444
Q ss_pred hh-----ccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHH
Q 003629 167 SI-----TAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFV 241 (806)
Q Consensus 167 s~-----Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (806)
.. |+. .+...+..- + --+.++.+.++-+++.++.-++..+..++ +.+.+.....+.++..+..=
T Consensus 105 l~~~Pggv~S-~~~t~lAkG-----n-ValsV~~tsvStll~~f~tPllv~l~~~~----~v~~~~~~m~~~i~~~vllP 173 (319)
T COG0385 105 LGCCPGGVAS-NAMTYLAKG-----N-VALSVCSTSVSTLLGPFLTPLLVGLLAGG----GVPVDVGGMFLSILLQVLLP 173 (319)
T ss_pred eeeCCCchhH-HHHHHHhcC-----c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHHHHH
Confidence 22 233 333333321 1 24556667778888887776655554321 01223344555556666666
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 003629 242 AFMLIVVRPIMDWVARQC 259 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~ 259 (806)
++.+.++|+......++.
T Consensus 174 ~~LG~~~r~~~~~~~~~~ 191 (319)
T COG0385 174 FVLGQLLRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777788777666665
No 62
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=97.11 E-value=0.14 Score=54.98 Aligned_cols=294 Identities=16% Similarity=0.174 Sum_probs=143.2
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHhh------cCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 003629 81 MFPSWSTPILESVASIGLLFFLFLVGL------ELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVG 154 (806)
Q Consensus 81 lfp~~~~~~l~~l~~lgl~~llF~~Gl------e~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (806)
++|++..+....+-+=.=.+.+|.+++ .||.+.+-|..++-+...+.+++...+.+.+++..++.++. +.-
T Consensus 94 llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~---d~~ 170 (438)
T COG3493 94 LLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQ---DTM 170 (438)
T ss_pred cCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChH---Hee
Confidence 344444333333322222334555554 78888888888888877788887777777777777765431 000
Q ss_pred hhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCch-------
Q 003629 155 YGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSS------- 227 (806)
Q Consensus 155 ~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~------- 227 (806)
.....-.+|-=...-+.|.---.-+-.+.-+.+.=..++.+..+..+++++.-+++--+-.. ...-.+++..
T Consensus 171 m~~vlPIM~GG~GaGavPLS~iYs~itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K-~psltGnG~Lv~~~~~~ 249 (438)
T COG3493 171 MYVVLPIMGGGMGAGAVPLSEIYSSITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKK-KPSLTGNGELVRSKSKE 249 (438)
T ss_pred eeEEeeeccCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCccCCceEEeccccc
Confidence 00000000000111111211111111233345666677888888899888877765443211 0000000000
Q ss_pred --H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHH
Q 003629 228 --L-------ISIWVLISGVAFVAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFV 298 (806)
Q Consensus 228 --~-------~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafv 298 (806)
. ..-......-.......+....++..+.. . | .+ + +...+...+-...++
T Consensus 250 ~~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~-~-P-----~~--v----a~MIil~a~lk~~nl-------- 308 (438)
T COG3493 250 ATEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG-L-P-----GP--V----AFMIILVAILKAANL-------- 308 (438)
T ss_pred hhhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc-C-C-----ch--H----HHHHHHHHHHHHhCc--------
Confidence 0 00001112222233334444444443332 2 2 11 1 111111222222222
Q ss_pred HHhhcCCCCChhHHHHHHHHHH-HHhhhhHHHHHHhccc-cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 003629 299 FGLTIPKGGDFVVRLMKKIQDF-VSGLLLPLYFASSGLK-TDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIP 376 (806)
Q Consensus 299 aGl~l~~~~~~~~~l~~~l~~~-~~~~~~plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~ 376 (806)
+|+ .-++=..++..+ .+.+.-|+. +.+|.. +|+..+.+..+|..+ ++.+..+++-..+.++.+++.|+-
T Consensus 309 ----vp~---~i~~GA~~l~~F~sk~~t~~Lm-~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~Y 379 (438)
T COG3493 309 ----VPK---EIEEGAKQLSQFFSKNLTWPLM-AGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFY 379 (438)
T ss_pred ----CCH---HHHHHHHHHHHHHHHhhHHHHH-HhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 332 112222233333 233444444 455766 888888776566654 344555677788999999999987
Q ss_pred hHHH-HHHHHHhhcchh-HHHHHHHhhcccCCCC
Q 003629 377 VRES-LALGVLMNTKGL-VELIVLNIGREKKVLN 408 (806)
Q Consensus 377 ~~~~-~~lgl~m~~rG~-v~l~~~~~~~~~~ii~ 408 (806)
+-|+ +.-|++|+.+|. -++.++..+-..++++
T Consensus 380 PVEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 380 PVEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred chHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 7666 555699988874 4566666655555554
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.92 E-value=0.31 Score=52.49 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=82.3
Q ss_pred hccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHH-HHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHH
Q 003629 49 KPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPI-LESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALA 127 (806)
Q Consensus 49 ~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~-l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 127 (806)
+...++..+--++.|+++|+..++..+.+. +..+. -+.+-++|.+ +.|.++++.++.+.+.+.......
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~------~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK------PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH------hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 346788888889999999973344322210 11222 2466677766 579999999999999988888888
Q ss_pred HHHHHHHHHHHHH-HHHhhhhcCCCCCchhHHHHHHHHHHhh---ccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Q 003629 128 GITLPFLLGAGVS-LFLQKAVDGESKVGYGQFIIFIGVSLSI---TAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAA 203 (806)
Q Consensus 128 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~lg~~ls~---Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~ 203 (806)
.+.+.+.+++.++ ..++.+. ..+.++++-.|+ ++...+.+.++- +.+--..+++...+=..++
T Consensus 92 ~v~~~~~~~~~lg~r~~~l~~---------~~~~Lia~GtsICG~SAi~A~a~~i~a----~~~~~a~ava~V~lfg~va 158 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFGLDR---------KLAILIAAGTSICGASAIAATAPVIKA----KEEDVAYAVATVFLFGTVA 158 (305)
T ss_pred HHHHHHHHHHHHHHHHhCCCH---------HHHHHHHhhcccchHHHHHHHcccccC----CCCceeeeehHHHHHHHHH
Confidence 7777777777666 5554432 334555443332 333333444332 2233334444444445555
Q ss_pred HHHHHHHH
Q 003629 204 WILLALAV 211 (806)
Q Consensus 204 ~~ll~~~~ 211 (806)
++++-.+.
T Consensus 159 m~~~P~l~ 166 (305)
T PF03601_consen 159 MFLYPLLG 166 (305)
T ss_pred HHHHHHHH
Confidence 55554443
No 64
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.89 E-value=0.011 Score=64.77 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=82.9
Q ss_pred CceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHHH
Q 003629 461 EFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540 (806)
Q Consensus 461 e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~af 540 (806)
-.|||+|+++.++....++-+-.++.....+.+++++|+++........ ... ....+++.+..
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~---~~~--------------~~~~eelle~~ 67 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEG---QDE--------------LAAAEELLERV 67 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccch---hHH--------------HHHHHHHHHHH
Confidence 3579999999999999888887777321135799999999843211110 000 01123444444
Q ss_pred HHHhhc------CceEEEEeEeec-----cCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHH
Q 003629 541 EAYNQL------RRVTVRHSTAIS-----ALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTV 609 (806)
Q Consensus 541 ~~~~~~------~~v~v~~~~~vs-----~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~v 609 (806)
+...+. .+++++..+... ...+.++.|+++|++.++|+|||+-.-+. ++. .+.++.+- .=
T Consensus 68 ~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~--~~~------~~~~~~~~-~~ 138 (357)
T PRK12652 68 EVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP--GGT------APMLQPLE-RE 138 (357)
T ss_pred HHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC--CCC------CcccchHH-HH
Confidence 444322 467777655442 11589999999999999999999965443 222 22566665 44
Q ss_pred hhcCCCceE
Q 003629 610 LLNAPCSVA 618 (806)
Q Consensus 610 l~~apc~V~ 618 (806)
|.++-|++-
T Consensus 139 ~~~~~~~~~ 147 (357)
T PRK12652 139 LARAGITYE 147 (357)
T ss_pred HHhcCCcee
Confidence 566666643
No 65
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.92 Score=48.60 Aligned_cols=181 Identities=18% Similarity=0.211 Sum_probs=92.1
Q ss_pred hhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccch---hHHHHHHHHHH
Q 003629 55 KVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKS---AFKIALAGITL 131 (806)
Q Consensus 55 ~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~~~ 131 (806)
-+.-.+++|+.+|-..-+.... .+ .-+...++.--.+|+.+.|+-.=+++|.+++++..|. ....-...+++
T Consensus 19 wv~l~i~~Gi~lG~~~p~~~~~-l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii 93 (342)
T COG0798 19 WVFLAIAIGILLGVHFPGLAQL-LG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWII 93 (342)
T ss_pred HHHHHHHHHHHHHhcccchhhh-cc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3556678888888554331110 00 0122334556678888888888899999999865544 22222333333
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 132 PFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAV 211 (806)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~ 211 (806)
--++.+.+++++.... + ....-.+++|.+=++ |-..+-. ++.+.+ -..++....+||++.+++++...
T Consensus 94 ~P~lm~~la~~fl~~~----p-ey~~GlILlglApC~-aMVivw~-----~La~Gd-~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 94 GPLLMFALAWFFLPDE----P-EYRAGLILLGLAPCI-AMVIVWS-----GLAKGD-RELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHhCCC----H-HHHHHHHHHHhhhhH-HHHHHHH-----hhccCc-HhhhhHHHHHHHHHHHHHHHHHH
Confidence 2223334444443221 0 111222333333222 2222222 322222 24555566789999998886554
Q ss_pred HHhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003629 212 SLAGKASGTESHHPSSLISIWVLISGVAFVAFMLIVVRPIMDWVARQC 259 (806)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~ 259 (806)
.+.-+. .+.....+.++..+.+.+.+-++.+.+.++...|.
T Consensus 162 ~~~l~v-------~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 162 KFFLGV-------ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHHhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433221 11112345555555555666666666677777666
No 66
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.64 E-value=0.11 Score=54.70 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHH
Q 003629 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARI 177 (806)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i 177 (806)
+..++|-.|-++|++...+..||...+-+.-+.+.++++..++.+++.... ..+.-...+.+.+-.+++.+--..=+.+
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi-~~g~~~GlS~LAiiaA~~nsNggLY~aL 129 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGV-EVGFFAGLSTLALVAAMDMTNGGLYASI 129 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCc-cccceeccHHHHHHHHHhCCcHHHHHHH
Confidence 456789999999999988888888878788888888888888877763210 0000112334444455555555555566
Q ss_pred HHhccccCCchH
Q 003629 178 LADLKLLTTQVG 189 (806)
Q Consensus 178 L~el~ll~s~~g 189 (806)
..|++ -+++.|
T Consensus 130 ~~qyG-d~~D~g 140 (314)
T TIGR00793 130 MQQYG-TKEEAG 140 (314)
T ss_pred HHHcC-CHhhhh
Confidence 66666 333444
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.51 E-value=0.074 Score=63.36 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHH
Q 003629 271 ICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPK-GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWG 349 (806)
Q Consensus 271 ~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~-~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 349 (806)
+.+.++.+.+...++..+|+++++|=.++|+++.. ...... -.+.++.+ .++-+.++.+.+|+.+|+..+... ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 44566666677778889999999999999999853 111111 12335555 567777888899999999988642 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcch
Q 003629 350 LLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKG 391 (806)
Q Consensus 350 ~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG 391 (806)
.++.+-...++.-.+..+..++++++++..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222222222222333445566778999999998888765443
No 68
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.37 E-value=0.12 Score=55.12 Aligned_cols=132 Identities=13% Similarity=0.212 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHchhHhHHHHHHHhhcCCC-CChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHH
Q 003629 278 VMVSGFLTDLIGIHAIFGAFVFGLTIPKG-GDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVIS 356 (806)
Q Consensus 278 ~l~~~~~a~~~g~~~~lgafvaGl~l~~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~ 356 (806)
....+.+++.++++..++-.++|+++... ...-+ -.+.++.+ ..+-+.++....|+++|++.+.+ .+.....+..
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~-~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~~ 79 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS-NVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVGV 79 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC-ChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHHH
Confidence 44556788899999999999999998641 11001 11234555 56667778888999999998875 3333333333
Q ss_pred HHHHHH-HHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHH
Q 003629 357 TACAGK-ILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAIL 415 (806)
Q Consensus 357 ~~~~~K-~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~l 415 (806)
..++.= ++.++...++++.++.+++.+|..+++-. .-++..+..+.+..+.+.-..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~ 137 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTV 137 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHH
Confidence 333333 44445567778999999999999877653 2344455566666554444333
No 69
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.33 E-value=1.5 Score=47.69 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHhccc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHh
Q 003629 91 ESVASIGLLFFLFLVGLELDLSSIRQNGK---SAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLS 167 (806)
Q Consensus 91 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls 167 (806)
+.....++..++|..|+.++.+++++..+ .....-...+++.-++++++........ + ..+..|..+.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~----~-----~~l~~Gl~~~ 100 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL----P-----PELALGLLIL 100 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC----C-----HHHHHHHHHH
Confidence 46777888899999999999999986443 3333333333333334444444442211 1 1133333332
Q ss_pred hc-----cHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCchHHHHHHHHHHHHHHH
Q 003629 168 IT-----AFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAFVA 242 (806)
Q Consensus 168 ~T-----s~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (806)
.. +..++.. .. .+.+ -..++..+.++.++++++.-+...+..+++ +.+.+....+..+...+..=.
T Consensus 101 ~~lPtTv~S~v~~T---~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~---~~~~~~~~~~~~L~~~vllP~ 171 (313)
T PF13593_consen 101 ACLPTTVSSSVVLT---RL--AGGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGS---SVSIDYASVLIKLVLTVLLPL 171 (313)
T ss_pred hhCCchhhHHHHHH---HH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHHH
Confidence 21 2222222 21 1222 245666677888888877765555444210 011222222333333444444
Q ss_pred HHHHHHHHHHHHHHHHc
Q 003629 243 FMLIVVRPIMDWVARQC 259 (806)
Q Consensus 243 ~~~~v~~~~~~~l~~~~ 259 (806)
+.+-+.|+...+..+|.
T Consensus 172 ~~Gq~~r~~~~~~~~~~ 188 (313)
T PF13593_consen 172 VLGQLLRRWVPKWVARH 188 (313)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555665555444444
No 70
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.14 E-value=0.18 Score=60.05 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCC-CChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHH
Q 003629 271 ICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKG-GDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWG 349 (806)
Q Consensus 271 ~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~-~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~ 349 (806)
..+.++.+.++..++..+|+++++|=.++|+++... ...-. -.+.++.+ ..+-+.++.+.+|+.+|+..+......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~- 86 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRS- 86 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHH-
Confidence 344555555666788889999999999999998631 11111 11334555 566667777888999999888652211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 003629 350 LLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNT 389 (806)
Q Consensus 350 ~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (806)
++.+....++.-.+..+...+++++++..++.+|..+..
T Consensus 87 -~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 87 -IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111111112222222233445578899888888875543
No 71
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.12 E-value=0.18 Score=59.59 Aligned_cols=133 Identities=16% Similarity=0.217 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHH
Q 003629 273 LTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG-DFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLL 351 (806)
Q Consensus 273 ~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~-~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~ 351 (806)
.++..++++..++..++++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++...+|+++|++.+.+. ....
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~--~~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV--KSIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH--hhHH
Confidence 34555566677788889999999999999986321 11111 1234444 566666777888999999887542 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHH
Q 003629 352 VLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEM 411 (806)
Q Consensus 352 ~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~ 411 (806)
....+..++.=++.++...+.+++++.+++.+|..++.-.. .++.....+.|.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 11112222223334445566788999999999987766332 34555666667665543
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.10 E-value=1.4 Score=47.80 Aligned_cols=260 Identities=15% Similarity=0.172 Sum_probs=134.4
Q ss_pred hcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH-----hhccHHHHHHHHH-h
Q 003629 107 LELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSL-----SITAFPVLARILA-D 180 (806)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~-e 180 (806)
+.||.+.+.|...|-+...+.+.+..++++..++..++..+. ...+.+..-+ ..-+.|. ..+-+ -
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~--------~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~ 110 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD--------HSLMYIVMPIMAGGVGAGIVPL-SIIYSAI 110 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--------HhhheeeehhcCCCcccchhhH-HHHHHHH
Confidence 489999999999888888888888888888888877765430 1111111111 0111221 11111 1
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCC------Cc---------hHHHHHHHHHHHHHHHHH
Q 003629 181 LKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAGK-ASGTESHH------PS---------SLISIWVLISGVAFVAFM 244 (806)
Q Consensus 181 l~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~-~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~ 244 (806)
++.-.+..-..++.+.++..+++++.-+++--+-.. .+=++.+. .. ....-......-.+..+.
T Consensus 111 ~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~ 190 (347)
T TIGR00783 111 TGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVA 190 (347)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHHHHHHHHHHHH
Confidence 233344455556666677777777666655433211 00000000 00 000000001111111122
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHH---H
Q 003629 245 LIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDF---V 321 (806)
Q Consensus 245 ~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~---~ 321 (806)
+|.++.+.. .. .++|+..-..++|.++....-..++++++...+ .
T Consensus 191 ~y~~g~l~~----~~----------------------------~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~ 238 (347)
T TIGR00783 191 LFMAGGLLK----SF----------------------------PGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFI 238 (347)
T ss_pred HHHHHHHHH----hc----------------------------ccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 222221111 11 144555555555555553333334455554443 2
Q ss_pred HhhhhHHHHHHhccc-cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhhcchh-HHHHHH
Q 003629 322 SGLLLPLYFASSGLK-TDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRES-LALGVLMNTKGL-VELIVL 398 (806)
Q Consensus 322 ~~~~~plfF~~~G~~-idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~-~~lgl~m~~rG~-v~l~~~ 398 (806)
..-+.+..++-+|+. +|++.+.+..+|. .+++++..+++=.+++++.+++.|+-+-|+ +..|++|+.+|. -+++++
T Consensus 239 ~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavL 317 (347)
T TIGR00783 239 SKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVL 317 (347)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeee
Confidence 333344444555766 7888887643444 345566667788899999999999877665 666788888764 456666
Q ss_pred HhhcccCCCC
Q 003629 399 NIGREKKVLN 408 (806)
Q Consensus 399 ~~~~~~~ii~ 408 (806)
..+...+++.
T Consensus 318 sAa~RM~Lmp 327 (347)
T TIGR00783 318 SASNRMNLIP 327 (347)
T ss_pred ehhhhccccc
Confidence 6666555553
No 73
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.08 E-value=0.19 Score=54.10 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHH----HHchhHhHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhh
Q 003629 273 LTLVGVMVSGFLTD----LIGIHAIFGAFVFGLTIPK-GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEA 347 (806)
Q Consensus 273 ~~l~~~l~~~~~a~----~~g~~~~lgafvaGl~l~~-~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 347 (806)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+....-++.. ...++.+=-++.|.++++..+.+ ..
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~-~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILA-LG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHH-hC
Confidence 44444555555555 3678888999999999997 444455555555544 56778888899999999999876 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHhhcchhHHHHHHHhhc
Q 003629 348 WGLLVLVISTACAGKILGTFVMA-LLCMIPVRESLALGVLMNTKGLVELIVLNIGR 402 (806)
Q Consensus 348 ~~~~~~~i~~~~~~K~~~~~l~~-~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~ 402 (806)
+...+..++.. ..-+..++..+ +.+|++.+.+..++.+.+--|.-+++...-..
T Consensus 83 ~~~~~~~~~~v-~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i 137 (305)
T PF03601_consen 83 WKGLLIIIIVV-ILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVI 137 (305)
T ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence 43333333333 33344444444 99999999999999988888876654444333
No 74
>PRK10490 sensor protein KdpD; Provisional
Probab=96.02 E-value=0.038 Score=68.82 Aligned_cols=124 Identities=10% Similarity=0.067 Sum_probs=85.9
Q ss_pred CCceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHHH
Q 003629 460 DEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVAS 539 (806)
Q Consensus 460 ~e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~a 539 (806)
...|||||+.+..+...+|+-+..++. +.+...+++|+..-..+..+ . ...+++.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~--~~~a~~~~l~V~~~~~~~~~----~-----------------~~~~~l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAA--RLGSVWHAVYVETPRLHRLP----E-----------------KKRRAILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHH--hcCCCEEEEEEecCCcCcCC----H-----------------HHHHHHHHH
Confidence 456899999999999999999998883 46788999997642111100 0 112445455
Q ss_pred HHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCC-CceE
Q 003629 540 LEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP-CSVA 618 (806)
Q Consensus 540 f~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ap-c~V~ 618 (806)
++ .+++-+..+... ..+++++.|.++|++++++.||||-.++.++ . ..+++.+++++++| -+|-
T Consensus 306 ~~-lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~--------~~~s~~~~l~r~~~~idi~ 370 (895)
T PRK10490 306 LR-LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW--W--------RRESFADRLARLGPDLDLV 370 (895)
T ss_pred HH-HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--c--------cCCCHHHHHHHhCCCCCEE
Confidence 43 444433333221 2378999999999999999999998876543 2 24578999999998 5777
Q ss_pred EEE
Q 003629 619 VLV 621 (806)
Q Consensus 619 ilv 621 (806)
|+-
T Consensus 371 iv~ 373 (895)
T PRK10490 371 IVA 373 (895)
T ss_pred EEe
Confidence 663
No 75
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.00 E-value=2.9 Score=45.79 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCchHHHhccchh---HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHH
Q 003629 96 IGLLFFLFLVGLELDLSSIRQNGKSA---FKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFP 172 (806)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~ 172 (806)
++++++||-.|++++++++++..|+. ..--+.++++-=+++++++..+.... ..+.+|..+-...|.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~----------p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL----------FEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHhcch
Confidence 45668999999999999998755543 32223334332234555554431110 114444443322222
Q ss_pred -HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 003629 173 -VLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALA 210 (806)
Q Consensus 173 -vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~ 210 (806)
+.+.++..+- +.+.. +.++...++-+++.++....
T Consensus 117 g~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l 152 (328)
T TIGR00832 117 IAMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPL 152 (328)
T ss_pred HHHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 1223333332 33333 55666677777777666443
No 76
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.25 Score=55.55 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCC-CCC---hhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchh
Q 003629 271 ICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPK-GGD---FVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVE 346 (806)
Q Consensus 271 ~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~-~~~---~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~ 346 (806)
+..++..+....++.+.+|+++++|=.++|+++.+ +.. ..++..+-+. ++=.-++...+|+.+|+..+.+..
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~la----elGvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLA----ELGVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHH----HHhHHHHHHHHHHCcCHHHHHHhc
Confidence 44556666666789999999999999999999986 211 1233333344 444445667889999999987632
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHH
Q 003629 347 AWGLLVLVISTACAGKILGT--FVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAIL 415 (806)
Q Consensus 347 ~~~~~~~~i~~~~~~K~~~~--~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~l 415 (806)
... ........+..=++.. +... .+++++.+++.+|..+..-.. -+.+.+..|.|..+++.-..+
T Consensus 87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~ 153 (397)
T COG0475 87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLI 153 (397)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHH
Confidence 221 2222222222222222 2223 589999999999988766532 144445556666655555444
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.58 E-value=0.14 Score=51.24 Aligned_cols=130 Identities=26% Similarity=0.410 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCc-----hHHHhccchhHHHHHHHHHH
Q 003629 57 IAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDL-----SSIRQNGKSAFKIALAGITL 131 (806)
Q Consensus 57 v~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~ 131 (806)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-- +++|+.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45577888888533221 1223668889999999999998854 45677888999999988888
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 132 PFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAV 211 (806)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~ 211 (806)
+++.+.+++.+++.+. ..++.++.-+.= ......++.|++ +.+.|.++.-+=++-+++++++.-++.
T Consensus 69 Sllgg~l~~~ll~~~~---------~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL---------KESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred HHHHHHHHHHHhcCCH---------HHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777774433 334444433211 112223344444 679999999999999998888776554
Q ss_pred H
Q 003629 212 S 212 (806)
Q Consensus 212 ~ 212 (806)
-
T Consensus 136 r 136 (191)
T PF03956_consen 136 R 136 (191)
T ss_pred H
Confidence 3
No 78
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.56 E-value=0.18 Score=54.08 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=81.0
Q ss_pred HHHHHchhHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 003629 284 LTDLIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKI 363 (806)
Q Consensus 284 ~a~~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~ 363 (806)
..+..|.++..=|.+.|+++....+...+...-++.. ...++.+=.++.|++++++++.+ ..+. .+.+.+..+..-+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~-~G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIAD-VGGS-GVLIIAITLSSTF 107 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHH-cCcc-HHHHHHHHHHHHH
Confidence 3444566688889999999986555555555555555 56777778889999999999876 2333 2334455556677
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHH
Q 003629 364 LGTFVMALLCMIPVRESLALGVLMNTKGLVELIVL 398 (806)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~ 398 (806)
+.+++..+++|++++.+..+|.+-+--|.-+++..
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~ 142 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAAT 142 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHh
Confidence 78888888999999999999998777776554333
No 79
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.40 E-value=0.37 Score=56.92 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCCh--hHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHH
Q 003629 274 TLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDF--VVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLL 351 (806)
Q Consensus 274 ~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~--~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~ 351 (806)
++.+...+..+++.+|++.+++-.++|+++...... ...-.+..+.+ ..+.+++.....|+++|+..+.. .+...
T Consensus 14 ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~~ 90 (562)
T PRK05326 14 LLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGPA 90 (562)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHHH
Confidence 334444455667778888888888888888642111 00111233444 67888888999999999999875 44444
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhCCChHHHHHHHHHhhcchh
Q 003629 352 VLVISTACAGKI-LGTFVMALLCMIPVRESLALGVLMNTKGL 392 (806)
Q Consensus 352 ~~~i~~~~~~K~-~~~~l~~~~~~~~~~~~~~lgl~m~~rG~ 392 (806)
..+....++.-. +.++...++++++|.+++.+|..+++-..
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 333333333333 33455567789999999999988776543
No 80
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.38 E-value=5.2 Score=43.56 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHch--hHhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchh-hH
Q 003629 272 CLTLVGVMVSGFLTDLIGI--HAIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVE-AW 348 (806)
Q Consensus 272 ~~~l~~~l~~~~~a~~~g~--~~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~-~~ 348 (806)
.+.+..+...+++.+.+++ ..++|+++.+.++.-.......+-+.+... ..-+.=..+|.+++...+.+.. .+
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~----aqv~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA----AQVLIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHHHHccccHHHHHHHHHHH
Confidence 4444555566677777776 467787777776653211111111122222 1223347789999887765522 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhccc
Q 003629 349 GLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREK 404 (806)
Q Consensus 349 ~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~ 404 (806)
+..++..+..+..-.+.+++.+++.++++.+.+. .+.|-|.-++.+.....+.
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence 4444555555666777888889999998887763 3588898888777665544
No 81
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.97 E-value=0.63 Score=45.57 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=78.9
Q ss_pred HHHHHHHHHhh--hccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH-
Q 003629 38 LLTSHCLAFLI--KPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSI- 114 (806)
Q Consensus 38 l~~~~~~~~l~--~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l- 114 (806)
+.+..+++.+- +++++-...|-+++|+++|-. +...+.. . .....+.+.++|+.+|++.+|++--++.+
T Consensus 6 i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~ 77 (169)
T PF06826_consen 6 IALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGFFS 77 (169)
T ss_pred HHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444332 556666777899999999842 2111110 1 23556789999999999999998886654
Q ss_pred --HhccchhHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHHHHHHh
Q 003629 115 --RQNGKSAFKIALAGITLPFLLGAGVSLF-LQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLARILAD 180 (806)
Q Consensus 115 --~~~~~~~~~ia~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~e 180 (806)
|+.+.+...+++.-.++|.++++.++++ ++.+ .....|.. =+.|++|.+....+.
T Consensus 78 ~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-----------~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 78 SLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLN-----------PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------HHHHHHHHHccccCcHHHHHHHHh
Confidence 5666677777777777788777777763 3322 12344443 356787877666554
No 82
>PRK10490 sensor protein KdpD; Provisional
Probab=94.88 E-value=0.13 Score=64.04 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=87.5
Q ss_pred CCceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCC
Q 003629 640 VPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDG 719 (806)
Q Consensus 640 ~~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 719 (806)
...||+|...|+|.++..++.|.|||..-++.+++++|..+.... .++.+++...+.+ ++.++.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-------------~~~~~~~~l~~~~-~lA~~lGa 314 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-------------LPEKKRRAILSAL-RLAQELGA 314 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-------------CCHHHHHHHHHHH-HHHHHcCC
Confidence 346899999999999999999999999999999999987543101 1222232233334 36655555
Q ss_pred cEEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEEEE
Q 003629 720 SVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVLVI 793 (806)
Q Consensus 720 ~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svlvv 793 (806)
. +....-+|.++++....+..+.+-||||++++ . . | . -.|.+.|.|.... .+--|.||
T Consensus 315 ~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~-----~---~-~--~-~~~s~~~~l~r~~--~~idi~iv 372 (895)
T PRK10490 315 E--TATLSDPAEEKAVLRYAREHNLGKIIIGRRAS-----R---R-W--W-RRESFADRLARLG--PDLDLVIV 372 (895)
T ss_pred E--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCC-----C---C-C--c-cCCCHHHHHHHhC--CCCCEEEE
Confidence 5 44555688999888888887899999999981 1 2 5 1 2367777777763 44577777
No 83
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.80 E-value=7.2 Score=42.08 Aligned_cols=101 Identities=25% Similarity=0.264 Sum_probs=66.5
Q ss_pred hccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHH
Q 003629 49 KPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAG 128 (806)
Q Consensus 49 ~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~ 128 (806)
...++|..+--|+-|+++|.. ...+.. .. ..-.-.-..+-++|++ +.|.++++.++...+.+.+.+-...
T Consensus 33 ~~~~l~al~lAIllGi~l~~l--~~~~~~---~~-~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~~ 102 (334)
T COG2855 33 IHLGLSALTLAILLGILLGIL--PQIPAQ---TS-AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAIT 102 (334)
T ss_pred hhcCchHHHHHHHHHHHHhcc--ccchhh---hc-cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHHH
Confidence 346789999999999999932 222210 00 0011123345566665 5688999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhh
Q 003629 129 ITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSI 168 (806)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~ 168 (806)
+..++++++.++.+++.+. ..++++|+-.|+
T Consensus 103 l~~t~~~~~~lg~~lgld~---------~~a~Lia~GssI 133 (334)
T COG2855 103 LSSTFLFAYFLGKLLGLDK---------KLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHhCCCH---------HHHHHHHccchh
Confidence 8888888877777665432 445666554443
No 84
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.75 E-value=0.95 Score=49.34 Aligned_cols=123 Identities=12% Similarity=0.123 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHH-----HchhHhHHHHHHHhhcCCCC--ChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcch
Q 003629 273 LTLVGVMVSGFLTDL-----IGIHAIFGAFVFGLTIPKGG--DFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGV 345 (806)
Q Consensus 273 ~~l~~~l~~~~~a~~-----~g~~~~lgafvaGl~l~~~~--~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~ 345 (806)
+.+.+.+.+.++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=-++.|+++++.++.+
T Consensus 9 l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~- 86 (335)
T TIGR00698 9 QMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD- 86 (335)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-
Confidence 334444445555554 47788888999999998722 22232232333 2245566667788999999999865
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChHHHHHHHHHhhcchhHHHHHH
Q 003629 346 EAWGLLVLVISTACAGKILG-TFVMALLCMIPVRESLALGVLMNTKGLVELIVL 398 (806)
Q Consensus 346 ~~~~~~~~~i~~~~~~K~~~-~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~ 398 (806)
..+... ...+..+..-+.. .++..+.+|++++.+..++.+-+--|.-+++..
T Consensus 87 ~G~~~l-~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~ 139 (335)
T TIGR00698 87 VGPNEI-VADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAI 139 (335)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHh
Confidence 233322 2233333334444 444458999999999999988777776554443
No 85
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.60 E-value=4.8 Score=43.78 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003629 99 LFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQ 144 (806)
Q Consensus 99 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 144 (806)
..++|-.|-.+|++...+..||...+.+.-+.+.++++.+++.+++
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g 99 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIG 99 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcch
Confidence 3688999999999998888888888877777777777776665554
No 86
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.55 E-value=2.9 Score=41.65 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCchHHHhccchhHHH--HH-HHHHHHHHHHHHHH-HHHhhhhcCCCCCchhHHHHHHHHHH---hh
Q 003629 96 IGLLFFLFLVGLELDLSSIRQNGKSAFKI--AL-AGITLPFLLGAGVS-LFLQKAVDGESKVGYGQFIIFIGVSL---SI 168 (806)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~~~i--a~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~lg~~l---s~ 168 (806)
+.+.+.||..|++++++++++..|+...+ ++ ..+++.-+++++++ .++... .....|..+ ++
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~-----------~~~~~Gl~l~~~~P 70 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS-----------PALALGLLLVAACP 70 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT-------------HHHHHHHHHHHHS-
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHhcCC
Confidence 45778999999999999999877664432 22 23333333344444 222211 112333322 22
Q ss_pred ccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003629 169 TAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVSLAG 215 (806)
Q Consensus 169 Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~ 215 (806)
.+ ..+.....+- +.+. .+..+...++.+.+.++.-+...+..
T Consensus 71 ~~--~~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 71 GG--PASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp B---THHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 22 2333333332 2232 26666677777777777665555443
No 87
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.53 E-value=8 Score=41.42 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhcCCchHHHhccch--hHHHHHH-HHH-HHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHh-hc
Q 003629 95 SIGLLFFLFLVGLELDLSSIRQNGKS--AFKIALA-GIT-LPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLS-IT 169 (806)
Q Consensus 95 ~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls-~T 169 (806)
-..+.+.||..|+.++.+++++..++ ....++. .++ .|.+ +++++..++.+. ....|..+. ..
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~~-----------~~~~glvL~~~~ 78 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLPP-----------ELAVGVLIVGCC 78 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCCH-----------HHHHHHHheeeC
Confidence 33488899999999999999886653 3333333 343 3543 344444443211 123333332 22
Q ss_pred cHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 170 AFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLALAVS 212 (806)
Q Consensus 170 s~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~~~~~ 212 (806)
..++.+.++.++---| ..++.+...++-+.+.+.+.+...
T Consensus 79 P~~~~s~v~t~~~~gn---~~la~~~~~~stlls~vt~Pl~l~ 118 (286)
T TIGR00841 79 PGGTASNVFTYLLKGD---MALSISMTTCSTLLALGMMPLLLY 118 (286)
T ss_pred CCchHHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222333444432123 344555555666666666554443
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.42 E-value=0.92 Score=55.95 Aligned_cols=115 Identities=10% Similarity=0.152 Sum_probs=59.9
Q ss_pred CCCceEEEEecCCccHHHHHHHHHHH--hhCCCeEEEEEEeeecC-CCCccCCcccccc-ccCCCccccchHHHHHHHHH
Q 003629 639 TVPKRVCIVFLGGPDDRRALDLGGRM--AENSGVKVTLVRFVHQA-SGAATGGIAERAT-SDISTENGISLDEAAVDDFM 714 (806)
Q Consensus 639 ~~~~~i~v~~~Gg~ddreaL~~a~~m--a~~~~~~ltvv~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~~ 714 (806)
+...||++++-+..+-+..+.++... .+.+...+.++|+++-. .+...-...+... ++...+++...-|+.++.|+
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~ 535 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 535 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHH
Confidence 34569999999877778888887765 34566899999998632 0010000000000 00000111122335555553
Q ss_pred hc--CCCcEEEE--EEEe--CChHHHHHHhcccCCCcEEEEccCC
Q 003629 715 RK--CDGSVECE--EKVM--GTVKDEVLKIGQSRDYELVVAGKGR 753 (806)
Q Consensus 715 ~~--~~~~v~~~--e~~v--~~~~~~~~~i~~~~~~DLiivG~~~ 753 (806)
.- .+..+.-. ..+. ++-.|.+..+++-...|+||++=|.
T Consensus 536 ~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk 580 (832)
T PLN03159 536 NYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHK 580 (832)
T ss_pred HHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCC
Confidence 31 11223332 3322 2555555555544449999999996
No 89
>PRK03818 putative transporter; Validated
Probab=94.19 E-value=1.3 Score=51.99 Aligned_cols=130 Identities=18% Similarity=0.299 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhh-hccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q 003629 32 IQTALVLLTSHCLAFLI-KPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELD 110 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~-~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d 110 (806)
+.+++.+.++.+++.+- +.+++- +.|-+++|+++|-.. . .+ +.-. .......+.++|+.+|+|.+|++--
T Consensus 9 ~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~--~--~~-~~~~---~~~~~~~~~~~gl~lFv~~vGl~~G 79 (552)
T PRK03818 9 SILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV--S--QF-GLTL---DSDMLHFIQEFGLILFVYTIGIQVG 79 (552)
T ss_pred HHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc--c--cc-Cccc---ChHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444444321 223333 478899999998521 0 00 0001 2345677999999999999999999
Q ss_pred chHH---HhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHHHHHHhc
Q 003629 111 LSSI---RQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLARILADL 181 (806)
Q Consensus 111 ~~~l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el 181 (806)
+..+ |+.+.+...+++.-.+++.++++.+.++++.+. ....|+. =+.|++|.+.......
T Consensus 80 p~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tp~l~aa~~~~ 143 (552)
T PRK03818 80 PGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL-----------PVMLGIFSGAVTNTPALGAGQQIL 143 (552)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccccccHHHHHHHHHH
Confidence 8765 455556666676666677777666554444321 2344443 3567777776655433
No 90
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=93.48 E-value=14 Score=40.34 Aligned_cols=101 Identities=26% Similarity=0.404 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCh--hHH-HHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 003629 30 LIIQTALVLLTSHCLAFLIKPLRQPK--VIA-EILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVG 106 (806)
Q Consensus 30 ~l~~i~lil~~~~~~~~l~~rl~~P~--iv~-~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 106 (806)
...+.++.++++...++++..+++|. +.| -+++|++.+-.... .-.| ..+..+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-------l~~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-------LPLP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-------ccCC-------hHHHHHHHHHHHHHHh
Confidence 35678888899999999999988864 556 66777777622111 0111 3456666666777899
Q ss_pred hcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 003629 107 LELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQK 145 (806)
Q Consensus 107 le~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~ 145 (806)
..+..+.+... ++.+.+.....+++...+...+|++..
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r 110 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKR 110 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877532 223334444444555556656666543
No 91
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.00 E-value=2.7 Score=50.59 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=51.2
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChHHHHHHHHHhhcchh
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL--CMIPVRESLALGVLMNTKGL 392 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~--~~~~~~~~~~lgl~m~~rG~ 392 (806)
..+.+.+-.+..|++++...+.. .|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++++-.-
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 56777788888899999998876 56655555555555555555555553 49999999999999988764
No 92
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=92.99 E-value=0.46 Score=56.29 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=84.0
Q ss_pred CCCceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHHH
Q 003629 459 KDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVA 538 (806)
Q Consensus 459 ~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~~ 538 (806)
....|||||+.+......+++-+..++. +.....+++|+..-.....+. ...+++.+
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~--~~~a~~~av~v~~~~~~~~~~---------------------~~~~~l~~ 302 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLAS--RLHAKWTAVYVETPELHRLSE---------------------KEARRLHE 302 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHH--HhCCCeEEEEEeccccccccH---------------------HHHHHHHH
Confidence 3456999999999999999999988884 356677888875532211110 11233333
Q ss_pred HHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceE
Q 003629 539 SLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVA 618 (806)
Q Consensus 539 af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ 618 (806)
.++--++.+. .+ .+-.+ .++.++|.++|+++++.-||+|-+.+.++... ..+++.+++.+++|-==.
T Consensus 303 ~~~Lae~lGa-e~--~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~--------~~~~l~~~L~~~~~~idv 369 (890)
T COG2205 303 NLRLAEELGA-EI--VTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRL--------FKGSLADRLAREAPGIDV 369 (890)
T ss_pred HHHHHHHhCC-eE--EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH--------hcccHHHHHHhcCCCceE
Confidence 3332233332 11 11223 78999999999999999999998887655433 347889999998875333
Q ss_pred EEEcC
Q 003629 619 VLVDR 623 (806)
Q Consensus 619 ilvdr 623 (806)
.+|..
T Consensus 370 ~ii~~ 374 (890)
T COG2205 370 HIVAL 374 (890)
T ss_pred EEeeC
Confidence 34443
No 93
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.74 E-value=0.58 Score=51.98 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=67.7
Q ss_pred HhhhhHHHHHHhccccchhhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHh-hcchhHHHHHH
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEA-WGLLVLVISTACAGKILGTFVMALLCMIPVRESLALG-VLM-NTKGLVELIVL 398 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~-~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg-l~m-~~rG~v~l~~~ 398 (806)
..+++-.||..+|+..++..+.+... ......+.....+...+.....+..++.++.-.+..| ..| ...|. +.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHH
Confidence 45677789999999999888765321 1112222223345566666666777888877665443 222 22333 34555
Q ss_pred Hhhccc-CCCCHHHHHH--HHHHHHHHHHhhHHHHHHHhcccc
Q 003629 399 NIGREK-KVLNDEMFAI--LVVMALFTTFMTTPMVMAIYKPLR 438 (806)
Q Consensus 399 ~~~~~~-~ii~~~~~~~--lvl~v~v~t~i~~pl~~~l~~~~~ 438 (806)
....+. |.-+.....+ ..+..+...++..|+.+|+.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555 6655444333 233444456777899999886654
No 94
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.70 E-value=1.4 Score=51.61 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChh-HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHH
Q 003629 274 TLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFV-VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLV 352 (806)
Q Consensus 274 ~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~-~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~ 352 (806)
.++.+.+...+++.+++++.++-+++|+++...+... -.+.. + ....+++|......|+++|...+.. ++..+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i~ 80 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLRELRE--NFRPIA 80 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH
Confidence 3444444556677778888888888888776311110 00111 1 2245788888899999999999876 444444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhCCChHHHHHHHHHhhcchhHH
Q 003629 353 LVISTACAG-KILGTFVMALLCMIPVRESLALGVLMNTKGLVE 394 (806)
Q Consensus 353 ~~i~~~~~~-K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~ 394 (806)
.+.+..++. -.+.++...+..++|+..++.+|.++++-.-+.
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 443333333 333344444467999999999999998877544
No 95
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.51 E-value=11 Score=38.39 Aligned_cols=111 Identities=12% Similarity=0.187 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 003629 310 VVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNT 389 (806)
Q Consensus 310 ~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~ 389 (806)
++.+..-+++-+-.+-.|+| =++..+.+ +|..+..-++++.+.-++.+++.++++|.+. .+..+ +.|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~--~~~~S--l~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSP--ELILS--LLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHH--hcc
Confidence 34455556666556667766 23344443 6777777777777888899999999999864 34443 578
Q ss_pred chhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003629 390 KGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAI 433 (806)
Q Consensus 390 rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l 433 (806)
|....-+...+..+.|-+.+-+-..++++-++...+.+++++.+
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887777788888888876555555556555555555665543
No 96
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.48 E-value=1 Score=53.03 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhc-----cCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCC
Q 003629 36 LVLLTSHCLAFLIKP-----LRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELD 110 (806)
Q Consensus 36 lil~~~~~~~~l~~r-----l~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d 110 (806)
+.++++..+++++-| +++-.+.|-+++|+++|..... . -+.+.++|+++|+|.+|++.-
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~G 76 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVG 76 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccC
Confidence 344444455555544 5567788999999999964321 1 123778999999999999999
Q ss_pred chHHHhccc---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 003629 111 LSSIRQNGK---SAFKIALAGITLPFLLGAGVSLFLQ 144 (806)
Q Consensus 111 ~~~l~~~~~---~~~~ia~~~~~~~~~~~~~~~~~l~ 144 (806)
+..++.-+| +-..+++.-+++.++++++++++++
T Consensus 77 p~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g 113 (562)
T TIGR03802 77 PQFFASLKKDGLREIILALVFAVSGLITVYALAKIFG 113 (562)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887764444 4444444444444444444444443
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.48 E-value=7 Score=37.74 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHchh--HhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchh-hHHHH
Q 003629 275 LVGVMVSGFLTDLIGIH--AIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVE-AWGLL 351 (806)
Q Consensus 275 l~~~l~~~~~a~~~g~~--~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~-~~~~~ 351 (806)
+......+++.+.+|+. .++|+++++.++.-.....-+.-+.+... -.-+.=..+|.+++...+.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34445556677888875 88899988888763221111122222222 2223447889999987776533 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhc
Q 003629 352 VLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGR 402 (806)
Q Consensus 352 ~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~ 402 (806)
+...+..++.-.+.+++..+..++++.+++ ++ ..|-|.-++.......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 555556666778888889999999998886 33 4788877776655433
No 98
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.05 E-value=0.81 Score=44.03 Aligned_cols=113 Identities=21% Similarity=0.233 Sum_probs=64.8
Q ss_pred CChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH---hcc-chhHHHHHHH
Q 003629 53 QPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIR---QNG-KSAFKIALAG 128 (806)
Q Consensus 53 ~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~-~~~~~ia~~~ 128 (806)
+-...|-+++|+++|-. +...+.... .| ......+.++|+.+|++.+|++--...+. +.+ .....++..-
T Consensus 21 LG~~~G~L~vgL~~G~~--~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHF--GATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHhc--cccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 33477889999999953 332221111 12 23567799999999999999999876654 333 1223333344
Q ss_pred HHHHHHHHHHHHHH-HhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHHHHHHhcc
Q 003629 129 ITLPFLLGAGVSLF-LQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLARILADLK 182 (806)
Q Consensus 129 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el~ 182 (806)
.++|.+++..+..+ ++.+ .....|+. =+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKLLRIN-----------YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHhCCC-----------HHHHHHHHhccccChHHHHHHHHHhc
Confidence 44444444444433 2221 12444443 46788888777655443
No 99
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.02 E-value=1.8 Score=50.95 Aligned_cols=115 Identities=20% Similarity=0.354 Sum_probs=74.2
Q ss_pred ccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH---HhccchhHHHHH
Q 003629 50 PLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSI---RQNGKSAFKIAL 126 (806)
Q Consensus 50 rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~ 126 (806)
++.+-...|.+++|+++|- ++...+... -.| ......+.++|+.+|++.+|++--+..+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFG-NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcce-ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3445566788999999985 332221110 122 3456679999999999999998887654 566666677777
Q ss_pred HHHHHHHHHHHHHHHH-HhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHHHHHHhc
Q 003629 127 AGITLPFLLGAGVSLF-LQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLARILADL 181 (806)
Q Consensus 127 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el 181 (806)
+-.++|.++++.++++ ++.+ .....|+. =+.|++|.+.......
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKYD-----------PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 7777777777777743 3332 23445543 4678888877765543
No 100
>PRK04972 putative transporter; Provisional
Probab=90.85 E-value=1.7 Score=51.06 Aligned_cols=120 Identities=22% Similarity=0.357 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHh-hhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCc
Q 003629 33 QTALVLLTSHCLAFL-IKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDL 111 (806)
Q Consensus 33 ~i~lil~~~~~~~~l-~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 111 (806)
.+.+.+.++++++.+ ++.+++-...|-+++|+++|..... .| ..+.++|+.+|+|.+|++--+
T Consensus 16 ~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp 79 (558)
T PRK04972 16 LLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGP 79 (558)
T ss_pred HHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhH
Confidence 334444444444443 2446677778999999999963321 11 124689999999999999987
Q ss_pred hHH---HhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHHHHHH
Q 003629 112 SSI---RQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLARILA 179 (806)
Q Consensus 112 ~~l---~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~ 179 (806)
..+ |+.+.+...++++..++++++++.++++++.+. ....|+. =+.|++|.+.....
T Consensus 80 ~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 80 NFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI-----------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHHhhccccCcHHHHHHHH
Confidence 765 455556666676666667666666665544322 2333333 35677777666544
No 101
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.70 E-value=2.4 Score=41.03 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhhccCCC--hhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchH
Q 003629 36 LVLLTSHCLAFLIKPLRQP--KVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSS 113 (806)
Q Consensus 36 lil~~~~~~~~l~~rl~~P--~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~ 113 (806)
+.+.++.+.+.+++++|+| .++|-++++.++.- .|..+ ...-..+.+++.+++--.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE-----------ITLPPWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHH
Confidence 3456778889999999998 56666666666552 12111 011234667777788889999999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003629 114 IRQNGKSAFKIALAGITLPFLLGAGVSLFLQKA 146 (806)
Q Consensus 114 l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 146 (806)
+++..+... ..+...++....+.+.++++...
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 987665433 34445555556666666666554
No 102
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=90.13 E-value=19 Score=36.98 Aligned_cols=109 Identities=11% Similarity=0.115 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcc
Q 003629 311 VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTK 390 (806)
Q Consensus 311 ~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~r 390 (806)
+.+..-+.+-+-.+-.|+| =+.+.+.+ .|..++.-++++.+.-++++++.++++|.+. .+.. .|.+|
T Consensus 65 ~~l~~lLgPAtVALAvPLY-------~q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~--~~~~--Sl~pK 131 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLY-------KKRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDN--AVMA--SMLPQ 131 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HHhhH
Confidence 3344445555555666665 23344443 5666666666777778888889999999864 3333 35889
Q ss_pred hhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Q 003629 391 GLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMA 432 (806)
Q Consensus 391 G~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~ 432 (806)
....-+...+..+.|-+.+-.-...+++-++..++.++++++
T Consensus 132 SVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~ 173 (232)
T PRK04288 132 AATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKL 173 (232)
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887767777777777765444444444444444455555544
No 103
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=89.89 E-value=1.4 Score=48.16 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=68.7
Q ss_pred HhhhhHHHHHHhccccchhhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-Hhh-cchhHHHHHH
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEA-WGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGV-LMN-TKGLVELIVL 398 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~-~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl-~m~-~rG~v~l~~~ 398 (806)
.+.|+-+||..+|+.-++..+..... ......................+.+.+.++.-++..|- .|. ..| .+.+.+
T Consensus 68 ~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHG-taAA~~ 146 (404)
T COG0786 68 QDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHG-TAAAWG 146 (404)
T ss_pred ccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCc-hHHHHH
Confidence 67889999999999999999876321 11111122222334445555566777887666665532 221 123 344666
Q ss_pred HhhcccCCCCHHHHHH--HHHHHHHHHHhhHHHHHHHhcccc
Q 003629 399 NIGREKKVLNDEMFAI--LVVMALFTTFMTTPMVMAIYKPLR 438 (806)
Q Consensus 399 ~~~~~~~ii~~~~~~~--lvl~v~v~t~i~~pl~~~l~~~~~ 438 (806)
....+.|.-+.....+ ..+..+...++.+|+.+|+.++.+
T Consensus 147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~ 188 (404)
T COG0786 147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNK 188 (404)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcC
Confidence 6667777666544333 234444555677899999886543
No 104
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.98 E-value=9.1 Score=41.69 Aligned_cols=134 Identities=17% Similarity=0.254 Sum_probs=79.5
Q ss_pred cCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHH
Q 003629 51 LRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGIT 130 (806)
Q Consensus 51 l~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 130 (806)
++.|.+++.++ |+++...... +|..-.+.++.+++...-+-||..|+.++.+.+++.++......+.-++
T Consensus 180 ~~nP~iia~i~-Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPLL-SVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHHH-HHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 57888887654 4666643221 3333467899999999999999999999998888777777666666665
Q ss_pred H-HHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Q 003629 131 L-PFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILLA 208 (806)
Q Consensus 131 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll~ 208 (806)
+ |.+. +++...++.+ .........++...+++...++.+.--.+. +.+-+...++-+++++.+.
T Consensus 250 l~P~i~-~~~~~~~~l~----------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 250 VQPAVM-AGISKLIGLR----------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHH-HHHHHHhCCC----------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 4 4433 4444444321 112344445555555556666655432332 3444444444444544443
No 105
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=88.03 E-value=1.2 Score=38.04 Aligned_cols=49 Identities=14% Similarity=0.039 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhcCccEEEecccccccCCCCccccccccchH-HHHHHHhhcCCCceE
Q 003629 562 TMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWR-EVNRTVLLNAPCSVA 618 (806)
Q Consensus 562 ~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~-~v~~~vl~~apc~V~ 618 (806)
.+++.+.+.|++.+++.|++|.|+....+.. ..+ +...++.++++|+|.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~--------~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRR--------LGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc--------cCchhhhhhcccccCCcee
Confidence 7889999999999999999999987665554 344 566788999999975
No 106
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=87.49 E-value=2.8 Score=50.01 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCc
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGS 720 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 720 (806)
..||+|...|+|..+..++.|.|+|+.-++..|++++..+. .. . ..+.+++.-++ -.++.++.+..
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~--~~--~---------~~~~~~~~l~~-~~~Lae~lGae 313 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPE--LH--R---------LSEKEARRLHE-NLRLAEELGAE 313 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccc--cc--c---------ccHHHHHHHHH-HHHHHHHhCCe
Confidence 46999999999999999999999999999999999987554 21 0 01122222212 12333334333
Q ss_pred EEEEEEEeCChHHHHHHhcccCCCcEEEEccCCCCccccccccccCCCCcccccchhhhhcC
Q 003629 721 VECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNILASS 782 (806)
Q Consensus 721 v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~ 782 (806)
.......|.++++....+..+.--||+|+++. ++ |-+.-. |.+.|-|++.
T Consensus 314 --~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~--------~r-w~~~~~-~~l~~~L~~~ 363 (890)
T COG2205 314 --IVTLYGGDVAKAIARYAREHNATKIVIGRSRR--------SR-WRRLFK-GSLADRLARE 363 (890)
T ss_pred --EEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcc--------hH-HHHHhc-ccHHHHHHhc
Confidence 33334578888877777777788999999981 12 533222 7788888776
No 107
>COG2985 Predicted permease [General function prediction only]
Probab=87.21 E-value=1.3 Score=49.39 Aligned_cols=103 Identities=26% Similarity=0.319 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcCCchH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH-HHhhcc
Q 003629 95 SIGLLFFLFLVGLELDLSS---IRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGV-SLSITA 170 (806)
Q Consensus 95 ~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~-~ls~Ts 170 (806)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+...++.++..+ +++. .+..|. +=+.||
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~----~~~~---~~~~Gm~sGAlTs 130 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLF----GIDL---GLIAGMFSGALTS 130 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhc----CCCH---HHhhhhhcccccC
Confidence 8999999999999998765 467777766666543 334444455555443 3322 222222 224455
Q ss_pred HHHH---HHHHHhccccCCchHHHHHHH--HHHHHHHHHHHHH
Q 003629 171 FPVL---ARILADLKLLTTQVGQTAMAA--AAFNDIAAWILLA 208 (806)
Q Consensus 171 ~~vv---~~iL~el~ll~s~~g~l~l~~--a~i~D~~~~~ll~ 208 (806)
+|.. ..+|+|++....-.-+..++- +.---++++++.+
T Consensus 131 TP~L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~ 173 (544)
T COG2985 131 TPGLGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGA 173 (544)
T ss_pred CchhHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 5554 456777774322233333333 3344445554443
No 108
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=87.19 E-value=7.4 Score=38.54 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhhcc---CCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHH-------HH
Q 003629 32 IQTALVLLTSHCLAFLIKPL---RQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLL-------FF 101 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl---~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~l 101 (806)
..+.++=++.++.+++.||+ |++.----|+.|+++.-.. |.... -.+....+..++-+|++ |-
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfA 88 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLA 88 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHH
Confidence 34444444555555555555 5555555566777765221 11110 01223334444444432 22
Q ss_pred HHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003629 102 LFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKA 146 (806)
Q Consensus 102 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 146 (806)
.-.-..|.|.+++||.+..-..--+.+.++||+.+..+++.+++.
T Consensus 89 IvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 89 IVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345678999999999998877777889999999999999998775
No 109
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=86.79 E-value=5.9 Score=44.27 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHH-HhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 294 FGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFA-SSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL 372 (806)
Q Consensus 294 lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~-~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~ 372 (806)
+...++|.+..+..-+.++-.+.+..++..+++|.+.+ .++-..+...+.+ ++.+.+...+..+.-++..++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555444456677788999999999998844 4444444444433 3333333333334445556666777
Q ss_pred hCCChHHHH--HHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Q 003629 373 CMIPVRESL--ALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKP 436 (806)
Q Consensus 373 ~~~~~~~~~--~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~ 436 (806)
++.+.+++. .++..++.-|.+.+-+....... +.....++..++..++.-++...+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~~ 147 (385)
T PF03547_consen 87 FRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLES 147 (385)
T ss_pred cCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhcc
Confidence 777766653 33333444555555444433322 222333333334444444444444443
No 110
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=86.68 E-value=4 Score=40.63 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeee
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVH 679 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~ 679 (806)
||++.+.||.|+--++.++.+.++..+.++.++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999998877777888888753
No 111
>PRK04972 putative transporter; Provisional
Probab=85.60 E-value=8.4 Score=45.39 Aligned_cols=131 Identities=17% Similarity=0.240 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhhhc-----cCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 003629 34 TALVLLTSHCLAFLIKP-----LRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLE 108 (806)
Q Consensus 34 i~lil~~~~~~~~l~~r-----l~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 108 (806)
+++-++++.+++.+-=+ +++-.--|.+++|+++|- ++...+.... .| .....++.++|+.+|+..+|+.
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~-~p---~~a~~~l~~~GL~lFla~vGl~ 459 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGY-IP---QGALNMVKEFGLMVFMAGVGLS 459 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCcee-eC---HHHHHHHHHHhHHHHHHHHHHh
Confidence 44444445555554433 344556688999999984 3333222111 22 3456789999999999999998
Q ss_pred CCchH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH-HHhhccHHHHHHHHHh
Q 003629 109 LDLSS---IRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGV-SLSITAFPVLARILAD 180 (806)
Q Consensus 109 ~d~~~---l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 180 (806)
--... +++.+.+.+.++.+-.++|.++++.+++++... .....+|+ +=+.|++|.+....+.
T Consensus 460 aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~----------~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 460 AGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM----------NRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 77654 455666777777777778888888777554321 12344554 4467888877665443
No 112
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.49 E-value=5.7 Score=42.50 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003629 96 IGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQ 144 (806)
Q Consensus 96 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~ 144 (806)
+++.+..|..|.++|+..+.+.+.+.+.+++..+.+++.+++.+..+++
T Consensus 196 f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg 244 (312)
T PRK12460 196 LLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVG 244 (312)
T ss_pred EeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3788899999999999999999999999999888888888887776663
No 113
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.13 E-value=4.3 Score=42.72 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCC-h--hHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhh
Q 003629 271 ICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGD-F--VVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEA 347 (806)
Q Consensus 271 ~~~~l~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~-~--~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~ 347 (806)
+..-+.++|+.+.+++.+.++|.+|-.++|.......| + ...+...+..++ ..+....+|+++.+..+.....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 45567778888889999999999999999999874333 2 244555555553 3344567899999888876444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCH
Q 003629 348 WGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLND 409 (806)
Q Consensus 348 ~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~ 409 (806)
|.+-..+.-++ .-..-.+..++..|+++...+..|+.++...++ ++.....+.+.+|.
T Consensus 87 iAipgAl~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV--vllraLqEr~lidt 144 (408)
T COG4651 87 IAIPGALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTV--VLLRALEERQLIDT 144 (408)
T ss_pred HhcchHHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHH--HHHHHHHHhccccc
Confidence 43322111111 111223344667788888889889888776654 33333334444443
No 114
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.89 E-value=10 Score=37.98 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHH
Q 003629 351 LVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLN 399 (806)
Q Consensus 351 ~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~ 399 (806)
.+.+.+..+++-++++++.+++.+++++|++.++.+++.-..-+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4456666778899999999999999999999999988777666655543
No 115
>PRK10711 hypothetical protein; Provisional
Probab=83.61 E-value=46 Score=34.28 Aligned_cols=82 Identities=10% Similarity=0.144 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhh
Q 003629 347 AWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMT 426 (806)
Q Consensus 347 ~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~ 426 (806)
.|..+++-+.++.+.-++++++.++.+|.+.. +.. .|.+|....-+...+..+.|-+.+-.-...+++-++..++.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~~--Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE--IAA--SILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 55556666667777788888899999998643 333 35789877766667777777654333333334444444444
Q ss_pred HHHHHH
Q 003629 427 TPMVMA 432 (806)
Q Consensus 427 ~pl~~~ 432 (806)
++++++
T Consensus 163 ~~llk~ 168 (231)
T PRK10711 163 HTLLNA 168 (231)
T ss_pred HHHHHH
Confidence 455543
No 116
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=83.36 E-value=58 Score=33.45 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhh
Q 003629 347 AWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMT 426 (806)
Q Consensus 347 ~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~ 426 (806)
+|..++..+.++.+.-+.++++.++.+|.+ +.... .+.+|....-+...+..+.|-..+-.-...+++-++...+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~--~~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLG--PEIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcC--HHHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 455555555566667778888889999987 33334 35889877666666777776654333333444444444444
Q ss_pred HHHHHH
Q 003629 427 TPMVMA 432 (806)
Q Consensus 427 ~pl~~~ 432 (806)
++++++
T Consensus 162 ~~ll~~ 167 (226)
T TIGR00659 162 PMVLRY 167 (226)
T ss_pred HHHHHH
Confidence 555544
No 117
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=82.81 E-value=10 Score=43.20 Aligned_cols=70 Identities=21% Similarity=0.390 Sum_probs=51.0
Q ss_pred hhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhcchhHH
Q 003629 323 GLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC--MIPVRESLALGVLMNTKGLVE 394 (806)
Q Consensus 323 ~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~m~~rG~v~ 394 (806)
.+++|+-....|+++|...+.+ .|..+..+.....+...++.....++. ++|+..++.+|.++++-.-+.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~--~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~ 135 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRR--VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVA 135 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchh
Confidence 6677777777899999999876 455555555555556666666666555 888889999999888876544
No 118
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.50 E-value=0.37 Score=53.86 Aligned_cols=112 Identities=18% Similarity=0.329 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHchhHhHHHHHHHhhcCCCCChh--HHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHH
Q 003629 276 VGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGGDFV--VRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVL 353 (806)
Q Consensus 276 ~~~l~~~~~a~~~g~~~~lgafvaGl~l~~~~~~~--~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~ 353 (806)
+.++....+.+.++++..+|-.++|+++.... .. +.-.+..+.+ ..+.+++.....|.++|...+.. .+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence 33444445788999999999999999998632 22 1112344555 67788888889999999999876 4444444
Q ss_pred HHHHHHHHHHHH-HHHHHH---HhCCChHHHHHHHHHhhcch
Q 003629 354 VISTACAGKILG-TFVMAL---LCMIPVRESLALGVLMNTKG 391 (806)
Q Consensus 354 ~i~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lgl~m~~rG 391 (806)
..+..++.-.+. ++.... ..++++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 444444444444 444443 47889999999998876654
No 119
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=82.03 E-value=11 Score=37.39 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=54.2
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCcEE
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVE 722 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~ 722 (806)
+|+|.+.||+|+-..|.++.++....+.+++++++.+.- ..+...+.++++++.++.+-+..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~------------------~~~s~~~~~~v~~~~~~~~i~~~ 62 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGL------------------REESDEEAEFVEEICEQLGIPLY 62 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-ST------------------SCCHHHHHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCC------------------CcccchhHHHHHHHHHhcCCceE
Confidence 589999999999999999999999999999999987542 12233456777777776543433
Q ss_pred EEEEEe-----CChHHHHHH--------hcccCCCcEEEEccCC
Q 003629 723 CEEKVM-----GTVKDEVLK--------IGQSRDYELVVAGKGR 753 (806)
Q Consensus 723 ~~e~~v-----~~~~~~~~~--------i~~~~~~DLiivG~~~ 753 (806)
+.+... .+.++.... +....+||.+++|-+.
T Consensus 63 ~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 63 IVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp EEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred EEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 333321 122222221 2222238999999885
No 120
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=81.73 E-value=30 Score=38.89 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcC
Q 003629 32 IQTALVLLTSHCLAFLIKP--LRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLEL 109 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~~r--l~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (806)
..+.+.+.+++.+...++. +.+|..++.+++|+++.+.. ... +. . .-..+.++.++++.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~----~~-~-~~~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFK----KF-P-WVAERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHh----Cc-c-ccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555566666666664 77999999999999998632 111 00 0 01234889999999999999888899
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHH-HHHhhhhcCCCCCchh-HHHHHHHHHHhhccHHHH-HH-HHHhccccC
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVS-LFLQKAVDGESKVGYG-QFIIFIGVSLSITAFPVL-AR-ILADLKLLT 185 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~-~~~l~lg~~ls~Ts~~vv-~~-iL~el~ll~ 185 (806)
++..+....-....+.+.+.++..+....+. ..++..+ +.. ..+-..|..+..|..++. ++ +-++.|-.+
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~y------daaV~~ag~~G~~lGatptaianm~av~~~yg~s~ 368 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDY------DAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSH 368 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchH------HHHHHhcccccccccchHHHHHHHHHHHhccCCCC
Confidence 9999999999999888888887765544333 3333322 100 111234445544444322 23 334445323
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q 003629 186 TQVGQTAMAAAAFNDIAAWILLALA 210 (806)
Q Consensus 186 s~~g~l~l~~a~i~D~~~~~ll~~~ 210 (806)
+-.=-+=+-.+.+-|++...+....
T Consensus 369 ~af~ivPlvgaf~id~~n~~~i~~f 393 (398)
T TIGR00210 369 QAFIVVPLVGAFFIDIINALVIKQF 393 (398)
T ss_pred cceehhhhHHHHHHHHhhHHHHHHH
Confidence 3222333455777777766655543
No 121
>PRK03818 putative transporter; Validated
Probab=81.02 E-value=45 Score=39.31 Aligned_cols=105 Identities=20% Similarity=0.337 Sum_probs=68.1
Q ss_pred hHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHh----ccchhHHHHHHHHHH
Q 003629 56 VIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQ----NGKSAFKIALAGITL 131 (806)
Q Consensus 56 iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~~ 131 (806)
--|.+++|+++|- ++...+... -.| ......+.++|+.+|+..+|++--...+.. .+.+...+++.-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYW-FMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCcee-ecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4678999999984 233222111 123 244677899999999999999887766543 355666677777777
Q ss_pred HHHHHHHHHHHH-hhhhcCCCCCchhHHHHHHHH-HHhhccHHHHHHH
Q 003629 132 PFLLGAGVSLFL-QKAVDGESKVGYGQFIIFIGV-SLSITAFPVLARI 177 (806)
Q Consensus 132 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 177 (806)
|.++++.++.++ +.+ ....+|. +=+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~~-----------~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKMN-----------YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHhccCCCcHHHHHH
Confidence 888777776443 332 2344554 3467888877665
No 122
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=80.88 E-value=44 Score=34.14 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhhccCC----ChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcC
Q 003629 34 TALVLLTSHCLAFLIKPLRQ----PKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLEL 109 (806)
Q Consensus 34 i~lil~~~~~~~~l~~rl~~----P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (806)
+.+-++.-.+.-++.||.|- |-+++.++...++-. +|. +|.++. ++.++++.+ +|-.-.-|..-+--
T Consensus 11 l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i--~Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYk 81 (230)
T COG1346 11 LLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI--SYEDYM---KGGQWINFL--LGPATVALAVPLYK 81 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC--CHHHHh---cccHHHHHH--HHHHHHHHhhHHHH
Confidence 33333334444556666663 555555444433321 111 121111 233444444 33344455666667
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH-hhccHHHHHHHHHhccccCCch
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSL-SITAFPVLARILADLKLLTTQV 188 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~l-s~Ts~~vv~~iL~el~ll~s~~ 188 (806)
+++.+||+|+....-...+..+.+..+..++.+++.+. .+..+..- |+| .|+.+.+-+++|-.+.-.
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~-----------~~~~Sl~PkSvT-TpiAm~vs~~iGGip~lt 149 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP-----------ELILSLLPKSVT-TPIAMEVSESIGGIPALT 149 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----------HHHHHhcccccc-cHHHHHHHHhcCCchHHH
Confidence 88999999999888778888877777777777775432 12222222 333 356777777776444333
Q ss_pred HHHHHHHHHHHHHHH
Q 003629 189 GQTAMAAAAFNDIAA 203 (806)
Q Consensus 189 g~l~l~~a~i~D~~~ 203 (806)
.-.++-.+++.-+++
T Consensus 150 av~Vi~tGi~Gavlg 164 (230)
T COG1346 150 AVFVILTGILGAVLG 164 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 123
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.86 E-value=15 Score=39.92 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCh--hHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcC
Q 003629 32 IQTALVLLTSHCLAFLIKPLRQPK--VIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLEL 109 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~~P~--iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 109 (806)
..+.+++.++...+++++|+|+|. ++|-++++.++.-.. ..+ .-.| . .+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~--~~~----~~~P----~---~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFG--GPS----FSLP----P---WLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh--CCC----CCCC----H---HHHHHHHHHHHHHHHccc
Confidence 356677778899999999999874 666666666655321 111 0112 2 345555666677999999
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKA 146 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 146 (806)
+.+.+|+..| ....++...++-+.++.+.++.+...
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~ 257 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRL 257 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887664 44445555555555566566655443
No 124
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.72 E-value=41 Score=35.25 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=49.8
Q ss_pred hhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCC---chHHH-hccchhHHHHHHHHH
Q 003629 55 KVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELD---LSSIR-QNGKSAFKIALAGIT 130 (806)
Q Consensus 55 ~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 130 (806)
.+.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ...-+ .--|+.+..++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56777888888884322211 11455788899999999999887 22111 122667777777666
Q ss_pred HHHHHHHHHHHHHhh
Q 003629 131 LPFLLGAGVSLFLQK 145 (806)
Q Consensus 131 ~~~~~~~~~~~~l~~ 145 (806)
-..+-|.+.++.++.
T Consensus 175 ssliGG~iaa~~l~l 189 (297)
T COG2431 175 SSLIGGLIAAFLLDL 189 (297)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666666666655553
No 125
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=75.59 E-value=18 Score=35.54 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=31.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeee
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVH 679 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~ 679 (806)
++++.+.||.|+--++.++.+...+.+.+++++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999988876677888888753
No 126
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.13 E-value=8.7 Score=40.34 Aligned_cols=105 Identities=10% Similarity=0.180 Sum_probs=62.4
Q ss_pred CccHHHHHHHHHHHhhCCC-eEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCcEEEEEEE--
Q 003629 651 GPDDRRALDLGGRMAENSG-VKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEEKV-- 727 (806)
Q Consensus 651 g~ddreaL~~a~~ma~~~~-~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~e~~-- 727 (806)
.|.|+-|++.|.|+.++.+ .++|++.+=++. . .+++.+++-....-++....+-.
T Consensus 35 N~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~--a--------------------~~~~~lr~aLAmGaD~avli~d~~~ 92 (256)
T PRK03359 35 SQYDLNAIEAACQLKQQAAEAQVTALSVGGKA--L--------------------TNAKGRKDVLSRGPDELIVVIDDQF 92 (256)
T ss_pred ChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc--h--------------------hhHHHHHHHHHcCCCEEEEEecCcc
Confidence 6999999999999998754 899999875543 1 02233444433322222222211
Q ss_pred -eCChHHHHHHhcccC---CCcEEEEccCC--CCcccccc-ccccCCCCcccccchhh
Q 003629 728 -MGTVKDEVLKIGQSR---DYELVVAGKGR--FPSTALAE-LADHQPENVGLGPIGNI 778 (806)
Q Consensus 728 -v~~~~~~~~~i~~~~---~~DLiivG~~~--~~~~~~~g-l~~~w~e~~elG~igd~ 778 (806)
-.|...|...|+..- +||||+-|++. .++-+... +.+ |-..|-+..+-++
T Consensus 93 ~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe-~Lg~P~vt~v~~l 149 (256)
T PRK03359 93 EQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGE-ILNIPAINGVSKI 149 (256)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHH-HhCCCceeeEEEE
Confidence 134545544444432 29999999997 34443333 445 5566777666664
No 127
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=72.11 E-value=25 Score=34.52 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=30.8
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEeee
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENS--GVKVTLVRFVH 679 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~--~~~ltvv~~~~ 679 (806)
||+|.+.||.|+--++.++.+...+. +.+++.+++..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998877654 77888888754
No 128
>PRK09903 putative transporter YfdV; Provisional
Probab=71.79 E-value=64 Score=34.94 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=65.1
Q ss_pred cCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHH
Q 003629 51 LRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGIT 130 (806)
Q Consensus 51 l~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ 130 (806)
++-|.+++.+++ +++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.-.+
T Consensus 171 ~~nP~iia~~~g-l~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVLA-TILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHHH-HHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 456888886554 54442 222 1344446788999999999999999999877665443 344433444444
Q ss_pred -HHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCCc
Q 003629 131 -LPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADLKLLTTQ 187 (806)
Q Consensus 131 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~ 187 (806)
.|++. .+....++.+ ....-....++...+++.+.++.+.--.+.+
T Consensus 240 ~~P~i~-~~~~~~~~l~----------~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~ 286 (314)
T PRK09903 240 LMPLAL-LLVGMACHLN----------SEHLQMMVLAGALPPAFSGIIIASRFNVYTR 286 (314)
T ss_pred HHHHHH-HHHHHHcCCC----------cHHHHHHHHHHcccHHHHHHHHHHHHcccHH
Confidence 35543 3222222211 1223455556666666667776654323433
No 129
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=71.32 E-value=64 Score=34.89 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHchhHh-HHHHHHHhhcCCCCChhHH----------HHHHHHHHH--HhhhhHHHHHHhccccc
Q 003629 272 CLTLVGVMVSGFLTDLIGIHAI-FGAFVFGLTIPKGGDFVVR----------LMKKIQDFV--SGLLLPLYFASSGLKTD 338 (806)
Q Consensus 272 ~~~l~~~l~~~~~a~~~g~~~~-lgafvaGl~l~~~~~~~~~----------l~~~l~~~~--~~~~~plfF~~~G~~id 338 (806)
...+.+.+..-|++-.-+.+|. +=+.-+|+++.|-+..+-. ....+-.+. ++++=|+-|.-+|..+|
T Consensus 5 ~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtD 84 (360)
T PF03977_consen 5 IVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTD 84 (360)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHh
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhccc--CCCCHHHHHHHH
Q 003629 339 VAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREK--KVLNDEMFAILV 416 (806)
Q Consensus 339 l~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~--~ii~~~~~~~lv 416 (806)
+..+...+...+.....=.+ ...+++.+...|++.+|+..+|.+=..-|-.++.+....-.. +-+.-..|+-|
T Consensus 85 FgpllanP~~~llGaaAQ~G----if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LAp~LlgpIaVaAYsYM- 159 (360)
T PF03977_consen 85 FGPLLANPKTLLLGAAAQFG----IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLAPHLLGPIAVAAYSYM- 159 (360)
T ss_pred hHHHHhCHHHHHHHHHHHHh----HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhhHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHhhHHHHHHHhccccccCc
Q 003629 417 VMALFTTFMTTPMVMAIYKPLRRLTP 442 (806)
Q Consensus 417 l~v~v~t~i~~pl~~~l~~~~~~~~~ 442 (806)
-+.-.+.||+.+.+-.+++|..+
T Consensus 160 ---aLvPiiqPpimklLttkkeR~I~ 182 (360)
T PF03977_consen 160 ---ALVPIIQPPIMKLLTTKKERKIR 182 (360)
T ss_pred ---HHHhhhhhHHHHHhcCHHHHhcc
No 130
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=70.15 E-value=1.3e+02 Score=30.65 Aligned_cols=82 Identities=12% Similarity=0.252 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhh
Q 003629 347 AWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMT 426 (806)
Q Consensus 347 ~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~ 426 (806)
+|..++..++.+.+.-++++++.++.+|.+.. ...+ +.+|....-+...+..+.|-..+-.-...+++-++..++.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~S--l~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IILS--LAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHH--HHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 56556666666777778888888999998643 3333 4788876666666666666654433333444444444444
Q ss_pred HHHHHH
Q 003629 427 TPMVMA 432 (806)
Q Consensus 427 ~pl~~~ 432 (806)
++++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 555544
No 131
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=70.09 E-value=1.3e+02 Score=31.10 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH
Q 003629 87 TPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSL 166 (806)
Q Consensus 87 ~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~l 166 (806)
.+.+..+ +|-.-.-|..-+--+.+.+||+++....-.+.+.++.++.+..++.+++.+. .+..+.+-
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~-----------~~~~Sl~p 130 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN-----------AVMASMLP 130 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHhh
Confidence 3444443 3333344455555678899999998887777888877777777777775432 13333332
Q ss_pred hhccHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Q 003629 167 SITAFPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWIL 206 (806)
Q Consensus 167 s~Ts~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~l 206 (806)
=+...|+...+-++.|-. -.++....+++.+++.++
T Consensus 131 KSVTtPIAm~is~~iGG~----psLtA~~ViitGi~Gai~ 166 (232)
T PRK04288 131 QAATTAIALPVSAGIGGI----KEITSFAVIFNAVIIYAL 166 (232)
T ss_pred HhhhHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHHHH
Confidence 223345677776666632 233334444444444433
No 132
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=69.90 E-value=12 Score=39.22 Aligned_cols=105 Identities=16% Similarity=0.092 Sum_probs=66.4
Q ss_pred CccHHHHHHHHHHHhh-CCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCcEEEEE---E
Q 003629 651 GPDDRRALDLGGRMAE-NSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEE---K 726 (806)
Q Consensus 651 g~ddreaL~~a~~ma~-~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~e---~ 726 (806)
.|.|+-|++.|.|+.+ ..+.++|++++=|+. .++.+.+-....-++..-.+ .
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------------------------a~~~lr~aLAmGaDraili~d~~~ 91 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------------------------AEEALREALAMGADRAILITDRAF 91 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecchh------------------------hHHHHHHHHhcCCCeEEEEecccc
Confidence 6999999999999999 799999999875543 22334443333222322222 1
Q ss_pred EeCChHHHHHHhccc---CCCcEEEEccCC--CCcccccc-ccccCCCCcccccchhhhh
Q 003629 727 VMGTVKDEVLKIGQS---RDYELVVAGKGR--FPSTALAE-LADHQPENVGLGPIGNILA 780 (806)
Q Consensus 727 ~v~~~~~~~~~i~~~---~~~DLiivG~~~--~~~~~~~g-l~~~w~e~~elG~igd~la 780 (806)
.-.|...+...|.+. .++|||+.|+.. .++.++.. +.+ |-..|....+-++-.
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe-~Lg~P~~t~v~~i~~ 150 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAE-LLGWPQVTYVSKIEI 150 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHH-HhCCceeeeEEEEEE
Confidence 123455555555553 339999999998 34444444 446 666677777766653
No 133
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=69.85 E-value=17 Score=39.55 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHH
Q 003629 319 DFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVL 398 (806)
Q Consensus 319 ~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~ 398 (806)
.+.++++=|+-|.-+|..+|+..+.. +-...++.-..+-++-+. +++.+...|++.+|+..+|.+=..-|-.+ ++.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgplla--nP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTa-If~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILA--RPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMV-LFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHh--ChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHH-HHH
Q ss_pred HhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEe
Q 003629 399 NIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACV 468 (806)
Q Consensus 399 ~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v 468 (806)
+.-+.-+++.+-....--.++ +.-.+.||+.+.+-.+++|.. +.+.+. .+-....|++-|+
T Consensus 177 s~kLAp~Llg~IaVAAYsYMa-LVPiiqPpimklLttkkER~I---~M~~~~-----r~VSk~eKilFpi 237 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYLS-LTYAGYPYLIKLLVPKKYRGL---EVEMEF-----PDVSQRAKFVFTI 237 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHHH-HHhcccchHHHhhcCHHHHcc---cCccCC-----CCCCccchhHHHH
No 134
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=68.22 E-value=51 Score=36.96 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=50.4
Q ss_pred HHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcc
Q 003629 317 IQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTK 390 (806)
Q Consensus 317 l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~r 390 (806)
+..++..+.+.+...-.|++++++.+.. ..|+...+..+...+.-.+....+.+.++++|-|++.+|-+.+..
T Consensus 59 ~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 59 FAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 3344455555566667799999988875 245544444455555566667778889999999999999876544
No 135
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=66.44 E-value=1.6e+02 Score=32.35 Aligned_cols=121 Identities=12% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHch--hHhHH-HHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchh-
Q 003629 271 ICLTLVGVMVSGFLTDLIGI--HAIFG-AFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVE- 346 (806)
Q Consensus 271 ~~~~l~~~l~~~~~a~~~g~--~~~lg-afvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~- 346 (806)
.+..+.+.+..+++.+..|+ ..++| +.++|++..- ....-.+-..+... -.-+-=..+|.++..+.+....
T Consensus 11 w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~-~~~~l~~P~~l~~~----~q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 11 WFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGL-RGLTLPLPRGLFKA----GQVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-ccccccCChHHHHH----HHHHHHHHHhhhcCHHHHHHHHH
Confidence 44555555566777777776 46678 6666666542 11111111111111 1123336678888877765533
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHH
Q 003629 347 AWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLN 399 (806)
Q Consensus 347 ~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~ 399 (806)
.|....++++..+..-.+..|+..++.+.|..+++. +..|-|.-++....
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA 135 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA 135 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH
Confidence 577777777777778888888888888777666653 34676666655544
No 136
>COG0679 Predicted permeases [General function prediction only]
Probab=65.18 E-value=1.3e+02 Score=32.56 Aligned_cols=140 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 292 AIFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMAL 371 (806)
Q Consensus 292 ~~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~ 371 (806)
+++.-...|..+.+.....++-.+.++.++..+.+|..++..=.+.+.+.. . .+...+...+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-A--DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-h--hHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhCCChHHH--HHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhccccc
Q 003629 372 LCMIPVRES--LALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRR 439 (806)
Q Consensus 372 ~~~~~~~~~--~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~ 439 (806)
..+.+.+++ ...+...+.-|-..+-++.. ..+++.....++...+.+....-+..+...+.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~-----~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~ 152 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVALS-----LFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGG 152 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHHH-----HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 137
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=63.60 E-value=8.8 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.7
Q ss_pred EEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEe
Q 003629 644 VCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRF 677 (806)
Q Consensus 644 i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~ 677 (806)
|++++.||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 34556666654
No 138
>COG3329 Predicted permease [General function prediction only]
Probab=62.06 E-value=2e+02 Score=30.77 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=65.2
Q ss_pred hhHhHHHHHHHhhcCC---CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 003629 290 IHAIFGAFVFGLTIPK---GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGT 366 (806)
Q Consensus 290 ~~~~lgafvaGl~l~~---~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~ 366 (806)
++|.+.-|+.|++++- +-.+.+.+.+.+. -.++--.=..-|+.+.-+.+.. ....++.-+.+.++.-++..
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888773 1111122222211 1111111122344454444433 33334444455555666777
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHH
Q 003629 367 FVMALLCMIPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAI 414 (806)
Q Consensus 367 ~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~ 414 (806)
++..++-+++..|+...+-..+.-..+.++.+...++..-+..+-|..
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 777888899999999988776666666666665555544444454444
No 139
>COG2985 Predicted permease [General function prediction only]
Probab=61.32 E-value=36 Score=38.53 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=67.6
Q ss_pred CChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchH---HHhccchhHHHHHHHH
Q 003629 53 QPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSS---IRQNGKSAFKIALAGI 129 (806)
Q Consensus 53 ~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~ 129 (806)
+-..-|.+++|+++|- +|.+.+.+ +..|+ .....+.++|+++||=.+|++---+. +-..+-..+..+..-.
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl~-w~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit 468 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPLT-WFMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVT 468 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCceE-EEcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHH
Confidence 3345677888888883 45554432 23343 45678999999987777777654333 2244555566666667
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH-HHhhccHHHHHHH
Q 003629 130 TLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGV-SLSITAFPVLARI 177 (806)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 177 (806)
++|.+.++.++.++.+. .+..+.|+ +=+.|++|...-.
T Consensus 469 ~vp~i~~~llg~~v~km----------n~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 469 LVPVIIVFLLGRYVLKM----------NWLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHHHhc----------cHHHHhhHHhcCCCChHHHHHH
Confidence 78888888877766432 22344444 4477998865443
No 140
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=61.23 E-value=1e+02 Score=34.35 Aligned_cols=97 Identities=26% Similarity=0.338 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHH-HHHHhh--cch
Q 003629 316 KIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIP-VRESLA-LGVLMN--TKG 391 (806)
Q Consensus 316 ~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~-~~~~~~-lgl~m~--~rG 391 (806)
.+.+.++..++|+-..+.=++.|+..+.. .. +..++..+++.++-.+++.+..+.++.. -.|.+. .|.... .-|
T Consensus 51 ~~y~~v~~~~vPlai~LlLl~~Dlr~i~~-~g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGG 128 (378)
T PF05684_consen 51 PVYDFVWTYLVPLAIPLLLLSADLRRILR-LG-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGG 128 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCc
Confidence 34455577778887777788899988875 23 3455566666777778887777777644 233332 222221 235
Q ss_pred hHHHHHHHhhcccCCCCHHHHHHHHH
Q 003629 392 LVELIVLNIGREKKVLNDEMFAILVV 417 (806)
Q Consensus 392 ~v~l~~~~~~~~~~ii~~~~~~~lvl 417 (806)
.+-++....++ + .+++.+...+.
T Consensus 129 s~N~~Av~~al--~-~~~~~~~a~~a 151 (378)
T PF05684_consen 129 SVNFVAVAEAL--G-VSDSLFAAALA 151 (378)
T ss_pred hhHHHHHHHHH--C-CCHHHHHHHHH
Confidence 55555444444 3 34566665433
No 141
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=61.15 E-value=2e+02 Score=29.57 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHH
Q 003629 97 GLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLAR 176 (806)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 176 (806)
|-...-|..-+--+.+.+||+++....-...+.++.+..+..++..++.+. .+..+.+-=+...|+...
T Consensus 66 gPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~-----------~i~~Sl~pkSvTtpiAm~ 134 (226)
T TIGR00659 66 GPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP-----------EIIASLLPKSVTTPIAMH 134 (226)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHhhhHHhhHHHHHH
Confidence 333334445555678889999988877777777777777777776665432 122233222233456777
Q ss_pred HHHhccccCCchHHHHHHHHHHHHHHHHHH
Q 003629 177 ILADLKLLTTQVGQTAMAAAAFNDIAAWIL 206 (806)
Q Consensus 177 iL~el~ll~s~~g~l~l~~a~i~D~~~~~l 206 (806)
+-+++|- .-.++....+++.+++-++
T Consensus 135 vs~~iGG----~~sLta~~vvitGi~Ga~~ 160 (226)
T TIGR00659 135 VSEMIGG----IPAVTAVFVILTGLLGTVF 160 (226)
T ss_pred HHHHhCC----hHHHHHHHHHHHHHHHHHH
Confidence 7666662 2234444444555444433
No 142
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=61.02 E-value=34 Score=32.99 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=54.7
Q ss_pred hHHHHHHHhhcCCCC---ChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcch--hh-HHHHHHHHHHHHHHHHHHH
Q 003629 293 IFGAFVFGLTIPKGG---DFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGV--EA-WGLLVLVISTACAGKILGT 366 (806)
Q Consensus 293 ~lgafvaGl~l~~~~---~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~--~~-~~~~~~~i~~~~~~K~~~~ 366 (806)
.-|+++.|+++.+-. |....+......+..++.+-+|...+|++.-.+.+..- .. +....+..++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 457778888776532 33334444556666788889999999999875444321 12 2223233334444446666
Q ss_pred HHHHHHhCCChHHHHHHHH
Q 003629 367 FVMALLCMIPVRESLALGV 385 (806)
Q Consensus 367 ~l~~~~~~~~~~~~~~lgl 385 (806)
++..+++|+++. ...|.
T Consensus 104 ~~~~~~~~~~~~--~~~G~ 120 (154)
T TIGR01625 104 VALIKLLRINYA--LTAGM 120 (154)
T ss_pred HHHHHHhCCCHH--HHHHH
Confidence 677788999865 34444
No 143
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=60.61 E-value=1.1e+02 Score=31.18 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=52.8
Q ss_pred HHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHHHHHHHHHhc
Q 003629 102 LFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFPVLARILADL 181 (806)
Q Consensus 102 lF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 181 (806)
-+-.-+-=+.+.+||+++....-...+.++.++.+..++.+++.+. .+..+.+-=+...|+...+-+++
T Consensus 61 ALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~-----------~~~~Sl~pkSVTtpiAi~is~~i 129 (215)
T PF04172_consen 61 ALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP-----------EIILSLAPKSVTTPIAIEISEQI 129 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHHHHHhhHHHHHHHHHHh
Confidence 3344444567889999988887777777777777777676665432 23344433333446777777777
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHH
Q 003629 182 KLLTTQVGQTAMAAAAFNDIAAWIL 206 (806)
Q Consensus 182 ~ll~s~~g~l~l~~a~i~D~~~~~l 206 (806)
+-. ..++....+++.+++.++
T Consensus 130 GG~----~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 130 GGI----PSLTAVFVVITGILGAVL 150 (215)
T ss_pred CCh----HHHHHHHHHHHhhHHHHh
Confidence 722 234444444444444433
No 144
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=60.47 E-value=55 Score=34.98 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=43.6
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCC
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCD 718 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (806)
.+|+|.+.||+|+--+|.++.++..+ .++.++||.+.- . ...+.+.+..+++..+.+
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~--~----------------~~~~~~~~~~~~~~~~~~ 78 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGL--R----------------GYSDQEAELVEKLCEKLG 78 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCC--C----------------CccchHHHHHHHHHHHhC
Confidence 68999999999999999999999888 899999986542 1 112446667777776644
No 145
>TIGR00930 2a30 K-Cl cotransporter.
Probab=58.52 E-value=4.8e+02 Score=33.09 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCCceEEEEecCCCChhhHHHHHHhhhcCCCCCceEEEEEEeeecCCCcchhhhhhhhcCCCCcccccccCCCcchHHH
Q 003629 458 SKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIV 537 (806)
Q Consensus 458 ~~~e~riLv~v~~~~~~~~li~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~i~ 537 (806)
.+-..++|+.+.+|++-+.+++++..+. +... -..+.|+++-+.+... ++.++ ..++..
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~--~~~g-l~i~~~v~~~~~~~~~----~~~~~--------------~~~~~~ 630 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFT--KGKG-LMICGSVIQGPRLECV----KEAQA--------------AEAKIQ 630 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhc--cCCc-EEEEEEEecCchhhhH----HHHHH--------------HHHHHH
Confidence 3445689999999999999999999998 3233 4566788875432111 11100 011221
Q ss_pred HHHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHh-----cCccEEEecccccccCCCCccccccccchHHHHHHHhhc
Q 003629 538 ASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEE-----KRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLN 612 (806)
Q Consensus 538 ~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~-----~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ 612 (806)
+-+ +..+++- +..+.--.++.+++-++.+. -+.+.++|+|..+|+.+.. .+ -. .|-++.+.. -+
T Consensus 631 ~~~----~~~~~~~--f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~--~~-~~-~y~~~i~~a-~~ 699 (953)
T TIGR00930 631 TWL----EKNKVKA--FYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEP--RA-WE-TYIGIIHDA-FD 699 (953)
T ss_pred HHH----HHhCCCe--EEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccc--hh-HH-HHHHHHHHH-HH
Confidence 112 1222322 32222236899999998887 4579999999988875443 11 11 233444343 35
Q ss_pred CCCceEEEEcCC
Q 003629 613 APCSVAVLVDRG 624 (806)
Q Consensus 613 apc~V~ilvdrg 624 (806)
+...|.|+ |+
T Consensus 700 ~~~~v~i~--r~ 709 (953)
T TIGR00930 700 AHLAVVVV--RN 709 (953)
T ss_pred cCCcEEEE--cc
Confidence 55676666 65
No 146
>PRK12342 hypothetical protein; Provisional
Probab=57.76 E-value=26 Score=36.77 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 003629 651 GPDDRRALDLGGRMAENSGVKVTLVRFVHQ 680 (806)
Q Consensus 651 g~ddreaL~~a~~ma~~~~~~ltvv~~~~~ 680 (806)
.|.|+-|++.|.|+.+ .+.++|++.+=++
T Consensus 34 Np~D~~AlE~AlrLk~-~g~~Vtvls~Gp~ 62 (254)
T PRK12342 34 SQFDLNAIEAASQLAT-DGDEIAALTVGGS 62 (254)
T ss_pred ChhhHHHHHHHHHHhh-cCCEEEEEEeCCC
Confidence 7999999999999995 5889999987544
No 147
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=56.77 E-value=54 Score=35.41 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=40.1
Q ss_pred hHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHH-
Q 003629 56 VIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFL- 134 (806)
Q Consensus 56 iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~- 134 (806)
++|-++.|.+-||.....+.+++..+| .=-+.+||...|++- -+++++.+|..+.+...+++.|.+
T Consensus 183 LlGgliIG~~~g~~g~~~i~pf~~~lF------------~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKPFFVDLF------------KGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLIN 249 (327)
T ss_pred HHHHHHHhheeCccchhhccchhhccH------------HHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHH
Confidence 344455555556655544444433332 223566777888754 233444444455555666667765
Q ss_pred --HHHHHHHHHhhh
Q 003629 135 --LGAGVSLFLQKA 146 (806)
Q Consensus 135 --~~~~~~~~l~~~ 146 (806)
++..++++++.+
T Consensus 250 a~ig~~lg~~~gls 263 (327)
T PF05982_consen 250 ALIGIGLGWLLGLS 263 (327)
T ss_pred HHHHHHHHHHhCCC
Confidence 444455555443
No 148
>PRK09903 putative transporter YfdV; Provisional
Probab=56.27 E-value=2.8e+02 Score=29.97 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=71.7
Q ss_pred HhHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 292 AIFGAFVFGLTIPK-GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMA 370 (806)
Q Consensus 292 ~~lgafvaGl~l~~-~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~ 370 (806)
|.+-+.++|+++.- +-+..+.+.+-++.+ .....|+-...+|+++....+.. .+.. ....+...+.-++.++...
T Consensus 174 P~iia~~~gl~~~l~~i~lP~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~~~--~~~~-~~~~~~Kli~~P~i~~~~~ 249 (314)
T PRK09903 174 PVVWAPVLATILVLVGVKIPAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKFEF--SAEI-AYNTFLKLILMPLALLLVG 249 (314)
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccc--cHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44444444443321 122334566666666 68889999999999986654432 2221 1222334444455556666
Q ss_pred HHhCCChHHHHHHHHHh--hcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 003629 371 LLCMIPVRESLALGVLM--NTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAIY 434 (806)
Q Consensus 371 ~~~~~~~~~~~~lgl~m--~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~ 434 (806)
..++++..+. ....++ .|-+....+ ++.+.|. |++..+..++...+.++++-|+.-++.
T Consensus 250 ~~~~l~~~~~-~v~vl~aa~P~a~~~~i---~A~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 250 MACHLNSEHL-QMMVLAGALPPAFSGII---IASRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHcCCCcHHH-HHHHHHHcccHHHHHHH---HHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677764433 222222 233333333 3344443 556656666666666777778877654
No 149
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=56.09 E-value=26 Score=38.16 Aligned_cols=113 Identities=18% Similarity=0.238 Sum_probs=63.6
Q ss_pred HHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHhhcchhH
Q 003629 320 FVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL------CMIPVRESLALGVLMNTKGLV 393 (806)
Q Consensus 320 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~m~~rG~v 393 (806)
+.++++=|+-|.-+|..+|+..+...+.. +++-..+-++-+. +++.+.. .|++.+|+..+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34678889999999999999888753221 1122222222222 2233332 389999999999865566666
Q ss_pred HHHHHHh-hcc-cCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhcccccc
Q 003629 394 ELIVLNI-GRE-KKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRL 440 (806)
Q Consensus 394 ~l~~~~~-~~~-~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~ 440 (806)
++.+... +.+ .|-+.-..|+-| + +.-++.||+.+.+-.+++|.
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER~ 251 (433)
T PRK15475 207 AIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTETERK 251 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHhC
Confidence 5544432 211 122222233333 2 23456788888776554443
No 150
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=55.65 E-value=27 Score=38.08 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=63.4
Q ss_pred HHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHhhcchhH
Q 003629 320 FVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL------CMIPVRESLALGVLMNTKGLV 393 (806)
Q Consensus 320 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~m~~rG~v 393 (806)
+.++++=|+-|.-+|..+|+..+...+.. +++-..+-++-+. +++.+.. .|++.+|+..+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34678889999999999999888753221 1122222222222 2233332 389999999999865566666
Q ss_pred HHHHHHh-hcc-cCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhcccccc
Q 003629 394 ELIVLNI-GRE-KKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRL 440 (806)
Q Consensus 394 ~l~~~~~-~~~-~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~ 440 (806)
++.+... +.+ .|-+.-..|+-| + +.-++.||+.+.+-.+++|.
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER~ 251 (433)
T PRK15476 207 AIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHhC
Confidence 5544432 111 122222233333 2 23456788888776554443
No 151
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=55.58 E-value=27 Score=38.07 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHhhcchhH
Q 003629 320 FVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL------CMIPVRESLALGVLMNTKGLV 393 (806)
Q Consensus 320 ~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~------~~~~~~~~~~lgl~m~~rG~v 393 (806)
+.++++=|+-|.-+|..+|+..+...+.. +++-..+-++-+. +++.+.. .|++.+|+..+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34678888999999999999888753221 1122222222222 2233332 389999999999865566666
Q ss_pred HHHHHHh-hcc-cCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhcccccc
Q 003629 394 ELIVLNI-GRE-KKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRL 440 (806)
Q Consensus 394 ~l~~~~~-~~~-~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~ 440 (806)
++.+... +.+ .|-+.-..|+-| + +.-++.||+.+.+-.+++|.
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---a-LVPiIQPpimklLTTkkER~ 251 (433)
T PRK15477 207 AIYLSGKLAPELLGAIAVAAYSYM---A-LVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---H-HHhcccchHHHhccCHHHhC
Confidence 5544432 111 122222233333 2 23456788888776554443
No 152
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=54.29 E-value=17 Score=41.43 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCccEEEec---ccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC-CCC---CccccC
Q 003629 563 MHEDIFHVAEEKRVAMIVLP---FHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG-CGA---HLTVAE 635 (806)
Q Consensus 563 ~~~dI~~~A~~~~~~lIil~---~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~-~~~---~~~~~~ 635 (806)
-.++||++|+++++|+|++| ||......-. -+..++.+-+.-+..-||..-++-|.+.. +.. .+.-
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~-----L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY-- 112 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKT-----LHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNY-- 112 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHH-----HHHHHHHHHHHccCCCceeeEEecccceeccccccceecc--
Confidence 35799999999999999999 4544322111 11234555556667889999999888643 111 1111
Q ss_pred CCCCCCceEEEEecC--CccH
Q 003629 636 PAATVPKRVCIVFLG--GPDD 654 (806)
Q Consensus 636 ~~~~~~~~i~v~~~G--g~dd 654 (806)
.+...+|.+|.++ |-||
T Consensus 113 --~DpNlNIsIPVFsIHGNHD 131 (646)
T KOG2310|consen 113 --EDPNLNISIPVFSIHGNHD 131 (646)
T ss_pred --cCCCcceeeeeEEeecCCC
Confidence 2234578888875 5444
No 153
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=54.18 E-value=93 Score=34.15 Aligned_cols=95 Identities=18% Similarity=0.094 Sum_probs=54.4
Q ss_pred HHHHHhhhcc-CCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchH---HHH-HHHHHHHHHHHHHHhhc-CCchHHH
Q 003629 42 HCLAFLIKPL-RQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTP---ILE-SVASIGLLFFLFLVGLE-LDLSSIR 115 (806)
Q Consensus 42 ~~~~~l~~rl-~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~---~l~-~l~~lgl~~llF~~Gle-~d~~~l~ 115 (806)
+.++.+++.+ ++|..+-+++.|+++-- +|..++ +..+ ... ++..--...+|+-.|+. .|++++.
T Consensus 192 y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~--------~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~ 261 (347)
T TIGR00783 192 FMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPK--------EIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLV 261 (347)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHH
Confidence 3344445544 68999999999999874 444432 2222 222 33333333445557876 8999998
Q ss_pred hcc-chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003629 116 QNG-KSAFKIALAGITLPFLLGAGVSLFLQKA 146 (806)
Q Consensus 116 ~~~-~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 146 (806)
+.. ..-+.+.+.+++--.+.++.++.++++.
T Consensus 262 ~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~Y 293 (347)
T TIGR00783 262 AALSWQFVVICLSVVVAMILGGAFLGKLMGMY 293 (347)
T ss_pred HHhchhHhhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 877 3344444444444445555666666543
No 154
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=52.66 E-value=2e+02 Score=31.27 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred hHHHHHHHhhcCCCCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003629 293 IFGAFVFGLTIPKGGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGV-EAWGLLVLVISTACAGKILGTFVMAL 371 (806)
Q Consensus 293 ~lgafvaGl~l~~~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~-~~~~~~~~~i~~~~~~K~~~~~l~~~ 371 (806)
++.+.++|...|.-...+..+. .|.. ..+.+.+.|...|++++...+.+. .+|...+......++.=.+.++....
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888886333222221 1223 233356677778999999888653 35665555555555555555555555
Q ss_pred HhCCChHHHHHHHHHh
Q 003629 372 LCMIPVRESLALGVLM 387 (806)
Q Consensus 372 ~~~~~~~~~~~lgl~m 387 (806)
..+-...+.+..|+..
T Consensus 84 l~~~~~~~~l~~Gl~~ 99 (313)
T PF13593_consen 84 LFPAFLPPELALGLLI 99 (313)
T ss_pred HhhccCCHHHHHHHHH
Confidence 5532223446666543
No 155
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=52.37 E-value=1.3e+02 Score=28.55 Aligned_cols=99 Identities=16% Similarity=0.043 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHHHHhhcCcccCCCchhhhcccCCCCch-HHHHHHHHHHHHHHHH
Q 003629 28 PLLIIQTALVLLTSHCLAFLIKPLRQPK---VIAEILGGILLGPSALGRNKEYLHLMFPSWST-PILESVASIGLLFFLF 103 (806)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~-~~l~~l~~lgl~~llF 103 (806)
..++.|+++++.+..+...+.+-+++|- ++|+++-=+.+. ++.... ..-. ..--.++++++.|+==
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~---~~~vk~-------~~v~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLC---TKVVKL-------EQVESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH---hCCcCH-------HHHHHHHHHHHHHHHHHHhhh
Confidence 4567888898888888888888777653 344432211111 121110 0000 0112234444444444
Q ss_pred HHhhcCCchHHHhccchhHHHHHHHHHHHHHHH
Q 003629 104 LVGLELDLSSIRQNGKSAFKIALAGITLPFLLG 136 (806)
Q Consensus 104 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~ 136 (806)
.+|+=..++.+++++.......+.+.++.++.+
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vt 109 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACT 109 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666555544444444444433
No 156
>COG3371 Predicted membrane protein [Function unknown]
Probab=51.77 E-value=83 Score=30.95 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHH
Q 003629 21 NPLNFAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLF 100 (806)
Q Consensus 21 ~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~ 100 (806)
+++-|+..+++..+..++.......- |.+-+.-.-++++|+.+.- .| +||++. ..+.+..+...+
T Consensus 47 ~~~ifN~glIl~Gll~i~~s~~l~r~---k~~~~g~~ll~is~lfLaL--VG--------VFpEgt--~pH~~vs~~ffl 111 (181)
T COG3371 47 YGWIFNTGLILLGLLVILFSILLIRN---KIENYGGALLIISGLFLAL--VG--------VFPEGT--PPHVFVSILFFL 111 (181)
T ss_pred cceEEechHHHHHHHHHHHHHHHHHH---HhhhcchHHHHHHHHHHHh--ee--------eCCCCC--CchHHHHHHHHH
Confidence 34555555555554444333222211 5565665667777776652 22 566543 467788888889
Q ss_pred HHHHHhhcCCchHHHhccchhH
Q 003629 101 FLFLVGLELDLSSIRQNGKSAF 122 (806)
Q Consensus 101 llF~~Gle~d~~~l~~~~~~~~ 122 (806)
++|.+.+-+..+..+++++...
T Consensus 112 l~fi~~~i~si~~~~~~~~~~~ 133 (181)
T COG3371 112 LSFIAMLIYSIGRLLRNRSGFG 133 (181)
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999998888777555443
No 157
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=51.61 E-value=59 Score=37.09 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=44.2
Q ss_pred ceEEEEecCCccHHHHHHHHHHHh-hCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCc
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMA-ENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGS 720 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma-~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ 720 (806)
.+|+|.+.||+|+--.|.+..++. ..++.+++++|+.+.- . .+.+.++++.+++.++.+-+
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhgl-----------------r-~~s~~~~~~~~~~~~~l~i~ 77 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGL-----------------S-PNADSWVKHCEQVCQQWQVP 77 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCC-----------------C-cchHHHHHHHHHHHHHcCCc
Confidence 689999999999998888888776 4568899999986432 1 12233557778887765433
No 158
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=51.04 E-value=1e+02 Score=33.19 Aligned_cols=172 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHchhHh-HHHHHHHhhcCCCCChhH------HHHH--HHHHHHHhhhhHHHHHHhccccchhhhc
Q 003629 273 LTLVGVMVSGFLTDLIGIHAI-FGAFVFGLTIPKGGDFVV------RLMK--KIQDFVSGLLLPLYFASSGLKTDVAKIR 343 (806)
Q Consensus 273 ~~l~~~l~~~~~a~~~g~~~~-lgafvaGl~l~~~~~~~~------~l~~--~l~~~~~~~~~plfF~~~G~~idl~~l~ 343 (806)
+.+.+.+..-|++-.-+.++. +=+.-+|+++.|-+.-+- .+.+ .-..+.++++=|+-|.-+|..+|+..+.
T Consensus 4 vMi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpll 83 (354)
T TIGR01109 4 IMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLL 83 (354)
T ss_pred ehHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHH
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHH
Q 003629 344 GVEAWGLLVLVISTACAGKILGTFVMALLCMI------PVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVV 417 (806)
Q Consensus 344 ~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~------~~~~~~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl 417 (806)
..+...+.....=.+ ...+++.+...|+ +.+|+..+|.+=..-|-.+ ++.+.-+.-+++.+-....-..
T Consensus 84 anP~~~llGaaAQ~G----iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~-If~s~~lap~Llg~IaVAAYsY 158 (354)
T TIGR01109 84 ANPRTLLLGAAAQFG----IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA-IYLSGKLAPELLAAIAVAAYSY 158 (354)
T ss_pred hChHHHHHHHHHHhh----HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh-hhhHhhhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHhccccccCc-cccccccc
Q 003629 418 MALFTTFMTTPMVMAIYKPLRRLTP-QNQQGLER 450 (806)
Q Consensus 418 ~v~v~t~i~~pl~~~l~~~~~~~~~-~~~r~i~~ 450 (806)
++ +.-.+.||+.+.+-.+++|..+ ++.|++.+
T Consensus 159 Ma-LvPiiqPpimklLttkkeR~I~M~~~r~Vsk 191 (354)
T TIGR01109 159 MA-LVPIIQPPIMKALTSEKERKIRMKQLRTVSK 191 (354)
T ss_pred HH-HHhcccchHHHhhcChHHhccccCCCCCcCc
No 159
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.85 E-value=71 Score=34.08 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=69.8
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
+..-|-.+.... ..+.+.|++.|++.++..||.-..+.-...+. ..+........+++++||.+--|+|.+
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~-------~~~~~~~~~~a~~~~vpv~lHlDH~~~ 86 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPL-------HLIGPLMVAAAKQAKVPVAVHFDHGMT 86 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCCh-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444444555554 57899999999999999999887654333222 146677778899999999999999854
Q ss_pred CCCCccccCCCCCCCceEEEEecC-CccHHHHHHHHHH---HhhCCCeEE
Q 003629 627 CGAHLTVAEPAATVPKRVCIVFLG-GPDDRRALDLGGR---MAENSGVKV 672 (806)
Q Consensus 627 ~~~~~~~~~~~~~~~~~i~v~~~G-g~ddreaL~~a~~---ma~~~~~~l 672 (806)
.. ....+ -...... +=+++ ..+++|-++.+++ +++..++.+
T Consensus 87 ~e-~i~~A---l~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 87 FE-KIKEA---LEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred HH-HHHHH---HHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 11 10000 0001122 22344 3467888877774 455555553
No 160
>PRK10711 hypothetical protein; Provisional
Probab=50.72 E-value=2.7e+02 Score=28.81 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHH-HhhccHHHHH
Q 003629 97 GLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVS-LSITAFPVLA 175 (806)
Q Consensus 97 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~ 175 (806)
|-.-.-|..-+--+.+.+||+++....-...+.++.++.+..++.+++.+. .+..+.. -|+| .|+..
T Consensus 67 gPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~-----------~~~~Sl~pkSVT-tPIAm 134 (231)
T PRK10711 67 QPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATP-----------EIAASILPKSVT-TPIAM 134 (231)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH-----------HHHHHHhhhhhh-HHHHH
Confidence 333344455555678889999988877667777777777777776665432 1233332 2333 45667
Q ss_pred HHHHhccccCCchHHHHHHHHHHHHHHHHHH
Q 003629 176 RILADLKLLTTQVGQTAMAAAAFNDIAAWIL 206 (806)
Q Consensus 176 ~iL~el~ll~s~~g~l~l~~a~i~D~~~~~l 206 (806)
.+-++.+-. -.++....+++.+++.++
T Consensus 135 ~is~~iGG~----~sLta~~ViitGi~Ga~~ 161 (231)
T PRK10711 135 AVGGSIGGI----PAISAVCVIFVGILGAVF 161 (231)
T ss_pred HHHHHhCCc----HHHHHHHHHHHHHHHHHH
Confidence 776666622 234444444454444443
No 161
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=49.81 E-value=2.4e+02 Score=33.39 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=47.5
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHhhcchh
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALL---------CMIPVRESLALGVLMNTKGL 392 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lgl~m~~rG~ 392 (806)
..+++|....-.|+.++...+.. +++.++.+.+.+++.-.+.+....++ .++++.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 45688888888899999998876 45544444444443333333222221 25699999999999888876
Q ss_pred HHH
Q 003629 393 VEL 395 (806)
Q Consensus 393 v~l 395 (806)
+..
T Consensus 147 VAV 149 (559)
T TIGR00840 147 VAV 149 (559)
T ss_pred HHH
Confidence 543
No 162
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=49.56 E-value=1.2e+02 Score=31.24 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=25.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEe
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRF 677 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~ 677 (806)
.++++.+.||+|+--.|.++.+.. +++ +.|+.+
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~--i~vv~v 58 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPM--IPVIFI 58 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCC--CCEEEE
Confidence 468999999999999999999876 233 445543
No 163
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=47.56 E-value=38 Score=36.51 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=31.9
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCe-EEEEEEee
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGV-KVTLVRFV 678 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~-~ltvv~~~ 678 (806)
..+|||-|.||+|+--.|.++.+.++..+- +++|++..
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 468999999999999999999999876555 78888653
No 164
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=47.54 E-value=2.2e+02 Score=35.09 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHhhccHH--
Q 003629 95 SIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIFIGVSLSITAFP-- 172 (806)
Q Consensus 95 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~lg~~ls~Ts~~-- 172 (806)
++-+-++....|++.|+..+.+ +.............-++.+.+.+++...++ ..++.+|.+++.-..-
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~---------~~~l~l~~lm~~kgl~el 382 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL---------RDSLALGLLMSTKGLVEL 382 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch---------hHHHHHHHHHHhhhHHHH
Confidence 4556677788899999999998 332332333333334444555555443332 4567788777764432
Q ss_pred HHHHHHHhccccCCchH
Q 003629 173 VLARILADLKLLTTQVG 189 (806)
Q Consensus 173 vv~~iL~el~ll~s~~g 189 (806)
++...-.|.|..+++.-
T Consensus 383 ~~~~~~~~~~~~~~~~f 399 (769)
T KOG1650|consen 383 IVLNTGLDRKILSDEGF 399 (769)
T ss_pred HHHHHHhhcCCcccchH
Confidence 23334455555554433
No 165
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=46.46 E-value=61 Score=34.61 Aligned_cols=71 Identities=11% Similarity=-0.013 Sum_probs=53.2
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
++.-|-.+.... ..+...+++.|++.++..||.-..+.-...|. ..+....+...+++++||++--|.|.+
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-------~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAGT-------DYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444444555555 57899999999999999999876654333332 147778889999999999999999864
No 166
>COG2035 Predicted membrane protein [Function unknown]
Probab=46.41 E-value=3.8e+02 Score=28.32 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhccCCChhHHHHHHHhhcC
Q 003629 25 FAFPLLIIQTALVLLTSHCLAFLIKPLRQPKVIAEILGGILLG 67 (806)
Q Consensus 25 ~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGillG 67 (806)
|=.|+..--+..+..+++++.++++. .|..+-...+|+++|
T Consensus 57 fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~ 97 (276)
T COG2035 57 FLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILG 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHH
Confidence 33566666667778888888888887 566666677898887
No 167
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=45.97 E-value=4.3e+02 Score=28.83 Aligned_cols=58 Identities=22% Similarity=0.129 Sum_probs=34.4
Q ss_pred HhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHH
Q 003629 46 FLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFL 104 (806)
Q Consensus 46 ~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 104 (806)
.+...+|+|+++.-+++|..+|-++.=...-..+.+ -+++.--++.-+.+|.++.+|.
T Consensus 47 ~ii~~~RlPRil~a~lvG~~La~sG~i~Q~l~rNpL-a~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 47 AIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPL-ADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999854421100000111 1223344555667777776665
No 168
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=44.82 E-value=4.3e+02 Score=28.50 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=80.3
Q ss_pred hhHhHHHHHHHhhcCC-CCChhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q 003629 290 IHAIFGAFVFGLTIPK-GGDFVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFV 368 (806)
Q Consensus 290 ~~~~lgafvaGl~l~~-~~~~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l 368 (806)
.+|.+=|.++|+++.- +-+....+.+-++.+ .....|+-...+|+.++...... .+.......++..+.-++.++.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~ 257 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAG 257 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777662 122335566666666 68899999999999998877643 3444444555566666666677
Q ss_pred HHHHhCCChHHH--HHHHHHhhcchhHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003629 369 MALLCMIPVRES--LALGVLMNTKGLVELIVLNIGREKKVLNDEMFAILVVMALFTTFMTTPMVMAI 433 (806)
Q Consensus 369 ~~~~~~~~~~~~--~~lgl~m~~rG~v~l~~~~~~~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l 433 (806)
....++.+.... ..+-.. .|-+....+ ++.+.|. +++..+..++...+.++++-|+..++
T Consensus 258 ~~~~~~l~~~~~~~~vl~aa-~P~a~~~~i---~A~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 258 ISKLIGLRGLELSVAILQAA-LPGGAVAAV---LATEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHHhCCChHHHHHHHHHHc-CChhhHHHH---HHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765443 222221 233333323 3334443 45555555555556667776766554
No 169
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=44.82 E-value=66 Score=34.53 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFV 678 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~ 678 (806)
+.++.|.||+|+--.|.++.+.-...+..+.++|+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 456789999999999999998765435667788764
No 170
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=44.41 E-value=63 Score=34.89 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.3
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFV 678 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~ 678 (806)
.++++.|.||+|+--.|.++.+.-...+..+.++|+.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 3689999999999999999987655445567777764
No 171
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=44.18 E-value=68 Score=34.30 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=53.1
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
++.-|-.+.... ..+...+++.|++.++..||.-..+.-...|. ..+..+.....+++++||.+--|.|.+
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~-------~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGI-------EYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 333344555555 57899999999999999999887655433333 146777788999999999999999863
No 172
>PRK01658 holin-like protein; Validated
Probab=43.93 E-value=2.2e+02 Score=26.22 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCh---hHHHHH--HHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHH
Q 003629 28 PLLIIQTALVLLTSHCLAFLIKPLRQPK---VIAEIL--GGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFL 102 (806)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P~---iv~~il--aGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~ll 102 (806)
..++.|+.+++.+..+...+.+-+++|- ++|.++ ..+..|..-..++. ...--.++++++.|+=
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~-----------~~a~~Ll~~m~llFVP 72 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIE-----------LGAETLLAELPLFFIP 72 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 3567788888888777777777666653 444432 11212211111111 0111223444544444
Q ss_pred HHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHH
Q 003629 103 FLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGA 137 (806)
Q Consensus 103 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~ 137 (806)
=.+|+=-..+.+++++-+.....+.+.++.++.+.
T Consensus 73 a~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 73 SAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666665555555555554444433
No 173
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=43.63 E-value=93 Score=29.96 Aligned_cols=28 Identities=36% Similarity=0.378 Sum_probs=24.4
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEEEee
Q 003629 651 GPDDRRALDLGGRMAENSGVKVTLVRFV 678 (806)
Q Consensus 651 g~ddreaL~~a~~ma~~~~~~ltvv~~~ 678 (806)
.+.|+|+|+.|+++++..+.+++++-+=
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 4889999999999999999999998554
No 174
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=43.00 E-value=5.5e+02 Score=29.18 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Q 003629 171 FPVLARILADLKLLTTQVGQTAMAAAAFNDIAAWILL 207 (806)
Q Consensus 171 ~~vv~~iL~el~ll~s~~g~l~l~~a~i~D~~~~~ll 207 (806)
+|++..+.+.+|+.+.+.--.+.+++.+.|..+.++-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 5788888888886555555788899999999888643
No 175
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=41.48 E-value=2.1e+02 Score=29.93 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=29.7
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCC--CeEEEEEEee
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENS--GVKVTLVRFV 678 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~--~~~ltvv~~~ 678 (806)
..+|+|.+.||+|+--.|.++.++.+.. +.++..+|+.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 3589999999999998888888876543 4577777764
No 176
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=41.18 E-value=59 Score=35.14 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.3
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEe
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRF 677 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~ 677 (806)
++++.|.||+|+--.|.++.+.....+..+.++++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~V 73 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHV 73 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEe
Confidence 56889999999999999999886544556777775
No 177
>PRK01821 hypothetical protein; Provisional
Probab=41.12 E-value=2e+02 Score=26.92 Aligned_cols=27 Identities=11% Similarity=-0.047 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCC
Q 003629 28 PLLIIQTALVLLTSHCLAFLIKPLRQP 54 (806)
Q Consensus 28 ~~~l~~i~lil~~~~~~~~l~~rl~~P 54 (806)
..++.|+++++.+..+...+.+-+++|
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lp 35 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPIT 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346778888888877777777777765
No 178
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=40.50 E-value=69 Score=32.85 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=48.0
Q ss_pred EEEeEeeccCC-chHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEE
Q 003629 551 VRHSTAISALS-TMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 551 v~~~~~vs~~~-~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~il 620 (806)
..++|.+.|.+ ...++|.+.+.+-++|.|++| |..+.... ....+..++-++..-||.++
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--GS~gvt~~--------~~~~~v~~ik~~~~lPvilf 76 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--GSDGVTEE--------NVDNVVEAIKERTDLPVILF 76 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--CcccccHH--------HHHHHHHHHHhhcCCCEEEe
Confidence 44688999999 999999999999999999999 33222222 57788888887999998877
No 179
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=40.32 E-value=37 Score=38.23 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCC-CcEEEEEEEe---CChHHHHHHhcccCC---CcEEEEccCCCCccccccccccCCCCcc
Q 003629 706 DEAAVDDFMRKCD-GSVECEEKVM---GTVKDEVLKIGQSRD---YELVVAGKGRFPSTALAELADHQPENVG 771 (806)
Q Consensus 706 d~~~l~~~~~~~~-~~v~~~e~~v---~~~~~~~~~i~~~~~---~DLiivG~~~~~~~~~~gl~~~w~e~~e 771 (806)
-.+.+..++.|.. -++.+....| +.+.|.+..|+.++. +|++||||+| ..++|-|+=+.|
T Consensus 149 irDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG------GSiEDLW~FNdE 215 (440)
T COG1570 149 LRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG------GSIEDLWAFNDE 215 (440)
T ss_pred HHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc------chHHHHhccChH
Confidence 3455666666643 4455544444 556677777777765 9999999999 456655764443
No 180
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.14 E-value=2.3e+02 Score=31.41 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=52.1
Q ss_pred hHhHHHHHHHhhcCCCCC-----hhHHHHHHHHHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHH
Q 003629 291 HAIFGAFVFGLTIPKGGD-----FVVRLMKKIQDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILG 365 (806)
Q Consensus 291 ~~~lgafvaGl~l~~~~~-----~~~~l~~~l~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~ 365 (806)
++.+=+.++|+++.--++ ....+.+-++.+ .....|+-.+.+|..+..........+......+++.++.-++.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 455555555555542111 124555666666 67889999999999887544332123333333456666666777
Q ss_pred HHHHHHHhCCChH
Q 003629 366 TFVMALLCMIPVR 378 (806)
Q Consensus 366 ~~l~~~~~~~~~~ 378 (806)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777886544
No 181
>COG3748 Predicted membrane protein [Function unknown]
Probab=39.83 E-value=2.6e+02 Score=30.06 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=27.5
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHH
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGK 362 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 362 (806)
+.+-+|..|+.+--+..+..-.. .+|.+..++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt~-fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGTQ-FNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccccCc-hhHHHHHHHHHHHHHHH
Confidence 56789999998877776644333 57877666666665555
No 182
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=39.58 E-value=3.6e+02 Score=26.13 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=26.8
Q ss_pred hhHHHHHHHhhcCccc---CCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhh
Q 003629 55 KVIAEILGGILLGPSA---LGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGL 107 (806)
Q Consensus 55 ~iv~~ilaGillGP~~---lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 107 (806)
.-+..+++|+++||.. .+...+..+.+++.. . .++-.|.++--|.+|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g--~---~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLG--T---VLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCC--c---hHHHHHHHHHHHHHHH
Confidence 4678899999999953 222233333333211 1 1223366667777887
No 183
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=39.00 E-value=92 Score=33.25 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=53.0
Q ss_pred ceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 548 RVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 548 ~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
.--|-.+.... ..+...|++.|++.++..||.-..+.-...+. ..+....+...++++.||.+--|+|.+
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~-------~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 15 GYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAGT-------EYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 33344455554 57899999999999999999887665433332 147778889999999999999999864
No 184
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=38.67 E-value=5.3e+02 Score=27.76 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=56.5
Q ss_pred HHHHHhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHH
Q 003629 318 QDFVSGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIV 397 (806)
Q Consensus 318 ~~~~~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~ 397 (806)
+++ ..+++=.|++.++..-|+..+...+.|.+ ..+...+...+..+..++.++.++-+-...++ -|.-|-.+.-.
T Consensus 272 ~el-gtv~lY~~v~vias~Ad~~~i~taP~~i~---~gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~ 346 (384)
T COG5505 272 QEL-GTVLLYLFVVVIASPADLRLIVTAPLIIL---FGFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPA 346 (384)
T ss_pred hhh-hHHHHHHHHHHhccchhHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhH
Confidence 344 35566688999999999998876444332 33333445666677788999988877666655 36666666666
Q ss_pred HHhhcccCCCC
Q 003629 398 LNIGREKKVLN 408 (806)
Q Consensus 398 ~~~~~~~~ii~ 408 (806)
...+.+...+.
T Consensus 347 ~A~A~nr~lv~ 357 (384)
T COG5505 347 MAIAKNRELVA 357 (384)
T ss_pred HHhhcCchhcc
Confidence 66666554444
No 185
>PRK08185 hypothetical protein; Provisional
Probab=36.72 E-value=83 Score=33.61 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=71.0
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
+.--|-.+.... ..+...+++.|++.++.+||.-..+.-...|. .+....+...++++.||.+--|.|.+
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~--------~~~~~~~~~a~~~~vPV~lHLDHg~~ 80 (283)
T PRK08185 11 HQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLGD--------NFFAYVRERAKRSPVPFVIHLDHGAT 80 (283)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhccH--------HHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 333444455554 57899999999999999999887765433333 37777888999999999999999863
Q ss_pred CCCCccccCCCCCCCceEEEEecCCc-cHHHHHHHHHHHh---hCCCeEE
Q 003629 627 CGAHLTVAEPAATVPKRVCIVFLGGP-DDRRALDLGGRMA---ENSGVKV 672 (806)
Q Consensus 627 ~~~~~~~~~~~~~~~~~i~v~~~Gg~-ddreaL~~a~~ma---~~~~~~l 672 (806)
... ...+ -..... -+-++|+. +.+|=++.++++. ...++.+
T Consensus 81 ~e~-i~~a---i~~Gf~-SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 81 IED-VMRA---IRCGFT-SVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHH-HHHH---HHcCCC-EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 100 0000 000011 25567764 4666666666554 6566665
No 186
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=36.04 E-value=91 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.4
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEe
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRF 677 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~ 677 (806)
++++.|.||+|+--.|.++.+...+. -++.++++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~ 34 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFL 34 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEe
Confidence 47899999999999988888765432 34566654
No 187
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=35.64 E-value=3.3e+02 Score=29.74 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 003629 98 LLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFL 143 (806)
Q Consensus 98 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l 143 (806)
+-+..|..|..+++..+.+.+-....+++..++++..+++....++
T Consensus 205 Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 205 IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhhee
Confidence 4456777999999999999988888888887777766666555544
No 188
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=35.55 E-value=1.1e+02 Score=32.77 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=52.7
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
+.--|-.+.... ..+...|++.|++.++.+||.-..+.-...|. ..+........++++.||++--|.|.+
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~-------~~~~~~~~~~A~~~~VPV~lHLDHg~~ 86 (284)
T PRK09195 16 GGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAGT-------EYLLAIVSAAAKQYHHPLALHLDHHEK 86 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 333344455554 57899999999999999999876654333332 146778889999999999999999854
No 189
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=35.37 E-value=1.4e+02 Score=32.08 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=48.4
Q ss_pred HHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHH
Q 003629 57 IAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLG 136 (806)
Q Consensus 57 v~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~ 136 (806)
+-.++.|+++|+. ++++.+.+- .-..+-..|+-|..|-.+|+..+.+.+-.-..+++..+++.....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~---------~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLA---------PGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHh---------cCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3346788888852 232222222 222334567889999999999999999988888887776665555
Q ss_pred HHHHHHH
Q 003629 137 AGVSLFL 143 (806)
Q Consensus 137 ~~~~~~l 143 (806)
+.+-.++
T Consensus 242 ~~~dr~i 248 (314)
T PF03812_consen 242 YLADRLI 248 (314)
T ss_pred HHHHHHH
Confidence 5444443
No 190
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=34.74 E-value=1.3e+02 Score=35.25 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=38.7
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHH---------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchh
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVIS---------TACAGKILGTFVMALLCMIPVRESLALGVLMNTKGL 392 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~---------~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~ 392 (806)
..+++|---.-.|.+++-..+.. +.+-+....+ ++...|+.+. ....++++++|++.+|-+++.---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~--n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFR--NIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhh--hhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 44566665566799998776654 3322222211 1222222222 223457899999999998776544
Q ss_pred HH
Q 003629 393 VE 394 (806)
Q Consensus 393 v~ 394 (806)
|.
T Consensus 178 Vt 179 (575)
T KOG1965|consen 178 VT 179 (575)
T ss_pred hH
Confidence 43
No 191
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=33.94 E-value=1.1e+02 Score=32.58 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=52.8
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
++-.|-.+.... .++...+++.|++.++.+||--..+.-...+. ..+....+...++++.||.+--|.|.+
T Consensus 11 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~-------~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 11 GGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAGL-------ELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 333444455554 47899999999999999999876654333332 147778888999999999999999864
No 192
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.79 E-value=55 Score=35.55 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCC-CcEEEEEEEe---CChHHHHHHhcccC------CCcEEEEccCC
Q 003629 706 DEAAVDDFMRKCD-GSVECEEKVM---GTVKDEVLKIGQSR------DYELVVAGKGR 753 (806)
Q Consensus 706 d~~~l~~~~~~~~-~~v~~~e~~v---~~~~~~~~~i~~~~------~~DLiivG~~~ 753 (806)
-.++++.++.+.. .++.+....| +...+.+..|+.+. +||+||++|+|
T Consensus 28 ~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 28 IQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 3466666666632 4566666655 55666777777665 38999999999
No 193
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=32.52 E-value=1.4e+02 Score=31.96 Aligned_cols=70 Identities=11% Similarity=0.005 Sum_probs=51.3
Q ss_pred ceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 548 RVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 548 ~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
.--|-.+.... ..+...|++.|++.++..||.-..+.-...+. ..+........++++.||.+--|.|.+
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~-------~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 17 GYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIAL-------EEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 33334455554 57899999999999999999865544322222 146777888999999999999999854
No 194
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=32.48 E-value=1.9e+02 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=24.0
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEee
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFV 678 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~ 678 (806)
++++.|.||.|+--++.++.+. +.++..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 4789999999999988887763 3346666664
No 195
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.11 E-value=1.3e+02 Score=33.01 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=54.1
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCC-CceEEEEcCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP-CSVAVLVDRGF 625 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ap-c~V~ilvdrg~ 625 (806)
+..-|-.+.... ..+...|++.|++.++.+||.-..+.....|. ..+..+.+...++++ .||++-.|.|.
T Consensus 16 ~~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~-------~~~~~~~~~~a~~~~~VPValHLDHg~ 86 (347)
T PRK09196 16 HGYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAGE-------PFLRHLILAAVEEYPHIPVVMHQDHGN 86 (347)
T ss_pred cCceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCCH-------HHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 334444565555 57899999999999999999887765443333 157888888889997 89999999985
Q ss_pred C
Q 003629 626 G 626 (806)
Q Consensus 626 ~ 626 (806)
+
T Consensus 87 ~ 87 (347)
T PRK09196 87 S 87 (347)
T ss_pred C
Confidence 4
No 196
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=32.08 E-value=1.8e+02 Score=31.98 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhcCceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccC-CCCccccc---------cccchH
Q 003629 534 DQIVASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRG-EGEEEIDS---------VSHGWR 603 (806)
Q Consensus 534 ~~i~~af~~~~~~~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~-~~~~~~~~---------~~~~~~ 603 (806)
+++.+.++. ++++.--|-.+.... ..+...+++.|++.++.+||.-..+.... .|.. ++. ....+.
T Consensus 13 ~~~~~lL~~-A~~~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 13 DDVHKLFQY-AKENNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKG-VKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcc-cccccchhhhhhhHHHHH
Confidence 445554443 333444444555555 57899999999999999999887665332 2210 000 001266
Q ss_pred HHHHHHhhcCCCceEEEEcCCCC
Q 003629 604 EVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 604 ~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
...+...+++++||++--|.|..
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 77888999999999999999865
No 197
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=31.95 E-value=8.1e+02 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=22.6
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQK 145 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~ 145 (806)
|.++++|.+.+.+..-+....+..++|..++..+..
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~p 101 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQP 101 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 666677766666655555666666666666655543
No 198
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=31.71 E-value=1.4e+02 Score=32.70 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=54.0
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCC-CceEEEEcCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP-CSVAVLVDRGF 625 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ap-c~V~ilvdrg~ 625 (806)
+.--|-.+.... ..+...|++.|++.++.+||.-..+.....|. ..+..+.+...++++ .||++--|.|.
T Consensus 14 ~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~-------~~~~~~~~~~ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 14 FGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAGA-------PFLRHLILAAIEEYPHIPVVMHQDHGN 84 (347)
T ss_pred cCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCH-------HHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 333444555555 57899999999999999999987765443333 157888889999998 99999999985
Q ss_pred C
Q 003629 626 G 626 (806)
Q Consensus 626 ~ 626 (806)
.
T Consensus 85 ~ 85 (347)
T TIGR01521 85 S 85 (347)
T ss_pred C
Confidence 4
No 199
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=31.36 E-value=5.4e+02 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 003629 351 LVLVISTACAGKILGTFVMALLCM 374 (806)
Q Consensus 351 ~~~~i~~~~~~K~~~~~l~~~~~~ 374 (806)
..+.++..+++=++|+++..+..|
T Consensus 161 ~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 161 AVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677888888887765
No 200
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.35 E-value=6.7e+02 Score=26.76 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=24.5
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHH
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGK 362 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K 362 (806)
+.+-+|+.|..+--+-.+..-. ..+|.++.++.+.+...|
T Consensus 229 ~ylTlPvLf~MiSnHyp~~y~~-~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 229 NYLTLPVLFLMISNHYPMTYGH-PYNWLILALIMLAGALIR 268 (300)
T ss_pred ceeHHHHHHHHHhccCcccccc-chhHHHHHHHHHHHHHHH
Confidence 4577899998876555543333 357876666555555555
No 201
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=31.17 E-value=1.5e+02 Score=32.58 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=54.0
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCC-CceEEEEcCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP-CSVAVLVDRGF 625 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ap-c~V~ilvdrg~ 625 (806)
+..-|-.+.... ..+...|++.|++.++.+||.-..+.....|. ..+..+.+...++++ .||++--|.|.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~-------~~~~~~v~~~ae~~~~VPVaLHLDHg~ 86 (347)
T PRK13399 16 NGYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAGD-------AMLRHMVLAAAEMYPDIPICLHQDHGN 86 (347)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCH-------HHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 334444555554 57899999999999999999987765444443 157888888999997 99999999986
Q ss_pred C
Q 003629 626 G 626 (806)
Q Consensus 626 ~ 626 (806)
+
T Consensus 87 ~ 87 (347)
T PRK13399 87 S 87 (347)
T ss_pred C
Confidence 4
No 202
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=29.81 E-value=9e+02 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhccC--CChhHHHHHHHh
Q 003629 32 IQTALVLLTSHCLAFLIKPLR--QPKVIAEILGGI 64 (806)
Q Consensus 32 ~~i~lil~~~~~~~~l~~rl~--~P~iv~~ilaGi 64 (806)
+...+-+.+++..-|++.+.| .+..++-.+.++
T Consensus 87 Iym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i 121 (480)
T KOG2563|consen 87 IYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI 121 (480)
T ss_pred HHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence 344445566777888888854 566666655554
No 203
>PRK06801 hypothetical protein; Provisional
Probab=29.24 E-value=1.7e+02 Score=31.38 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=72.2
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
+..-|-.+.... ..+...|++.|++.++.+||.-..+.....+. ..+....+...++++-||++--|.|..
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~-------~~~~~~~~~~a~~~~vpV~lHlDH~~~ 86 (286)
T PRK06801 16 HGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYISL-------ESLVEAVKFEAARHDIPVVLNLDHGLH 86 (286)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCH-------HHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 444444555554 57899999999999999999887765443332 157888889999999999999999854
Q ss_pred CCCCccccCCCCCCCceEEEEecCCcc-HHHHHHHHHH---HhhCCCeEE
Q 003629 627 CGAHLTVAEPAATVPKRVCIVFLGGPD-DRRALDLGGR---MAENSGVKV 672 (806)
Q Consensus 627 ~~~~~~~~~~~~~~~~~i~v~~~Gg~d-dreaL~~a~~---ma~~~~~~l 672 (806)
... ...+ ....... +=|+|+.. .+|-++.+++ +|+..++.+
T Consensus 87 ~e~-i~~A--i~~GftS--Vm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 87 FEA-VVRA--LRLGFSS--VMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHH-HHHH--HHhCCcE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 100 0000 0001112 23477644 4787777664 466677653
No 204
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=29.01 E-value=3e+02 Score=29.63 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=47.7
Q ss_pred HHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHhccchhHHHHHHHHHHHHHHH
Q 003629 57 IAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRQNGKSAFKIALAGITLPFLLG 136 (806)
Q Consensus 57 v~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~ 136 (806)
+-.++.|+++|+. .+++.+.+-| -..+-..|+-|..|-.+|++.+.+.+-.-..+++...+++....
T Consensus 175 ilPlliG~ilGNL----D~~~r~fl~~---------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 175 VLPFLVGFALGNL----DPELRDFFSK---------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHhcc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3346788888852 2222222211 12233567889999999999999988888888887766666555
Q ss_pred HHHHHHH
Q 003629 137 AGVSLFL 143 (806)
Q Consensus 137 ~~~~~~l 143 (806)
+....++
T Consensus 242 ~~~dr~~ 248 (314)
T TIGR00793 242 ILADKFI 248 (314)
T ss_pred HHHHHHh
Confidence 5444444
No 205
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=28.68 E-value=1.6e+02 Score=28.29 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.0
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCC
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENS 668 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~ 668 (806)
++++.|.||+|+.-.|.++.+...+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~ 26 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV 26 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999888773
No 206
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=28.37 E-value=1.9e+02 Score=25.26 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=25.0
Q ss_pred EEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 003629 644 VCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQ 680 (806)
Q Consensus 644 i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~ 680 (806)
+++.+.||.|+--.+..+.+... ++..+++.+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCC
Confidence 47889999999998888887632 5777776543
No 207
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=27.45 E-value=1.1e+02 Score=33.52 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhhhhHHH-HHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HH-HHh
Q 003629 311 VRLMKKIQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLA-LG-VLM 387 (806)
Q Consensus 311 ~~l~~~l~~~~~~~~~plf-F~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~-lg-l~m 387 (806)
++-.+.++.++..+|.|.. |.-.|=.+++..+.+ |+++=+-+++.++.-.+..|+..+.++-|.+..-+ ++ ...
T Consensus 40 ~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~ 116 (408)
T KOG2722|consen 40 RDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAF 116 (408)
T ss_pred HHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhcCeEEEEeec
Confidence 4445556666678899976 889999999998875 44444455555566667778889999988877532 21 112
Q ss_pred hcchhHHHHHH-HhhcccCC
Q 003629 388 NTKGLVELIVL-NIGREKKV 406 (806)
Q Consensus 388 ~~rG~v~l~~~-~~~~~~~i 406 (806)
+.-|...+++. .+..+.+.
T Consensus 117 GN~gnlpL~Lv~alc~~~~~ 136 (408)
T KOG2722|consen 117 GNSGNLPLILVPALCDEDGI 136 (408)
T ss_pred CCcCCcHHHHhHHHhcccCC
Confidence 33455555444 34444443
No 208
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=27.43 E-value=7.2e+02 Score=26.87 Aligned_cols=63 Identities=27% Similarity=0.277 Sum_probs=35.7
Q ss_pred HHHHHhhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHH
Q 003629 42 HCLAFLIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLV 105 (806)
Q Consensus 42 ~~~~~l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~ 105 (806)
..-..+...+|+|+++.-+++|..++-++.=. ...++.=+-+++.--+..-+.+|.++.++..
T Consensus 32 ~~~~~ii~~~RlPR~l~a~l~G~~La~sG~~l-Q~~~rNpLA~P~iLGissgA~lg~~~~~~~~ 94 (311)
T PF01032_consen 32 SIAQFIIWDLRLPRILAAILVGAALALSGALL-QTLTRNPLADPSILGISSGASLGAVLAILLF 94 (311)
T ss_dssp HHHHHHHCCTCHHHHHHHHHHHHHHHHHHHHH-HHHTT-TT--TTTTTHHHHHHHHHHHHHHCC
T ss_pred chhhhhhhHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCCCccccccchHhHHHHHHHHHHHHHh
Confidence 34455677899999999999999988443110 0000000112223345566777777666553
No 209
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=27.20 E-value=29 Score=36.40 Aligned_cols=132 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHHHHHHhh
Q 003629 322 SGLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVELIVLNIG 401 (806)
Q Consensus 322 ~~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l~~~~~~ 401 (806)
++++=++.|..+|..+|+..+...+.-.+.....=.+ +..+++.+...|+..+|+..+|.+=+.-|-.++.+.+.
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~G----IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~- 157 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQFG----IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNK- 157 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHHhhhHHHhc----hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccc-
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHhhHHHHHHHhccccccCcccccccccCCCCCCCCCCCceEEEEe
Q 003629 402 REKKVLNDEMFAILVVMALFTTFMTTPMVMAIYKPLRRLTPQNQQGLERQSPSSKNSKDEFKIQACV 468 (806)
Q Consensus 402 ~~~~ii~~~~~~~lvl~v~v~t~i~~pl~~~l~~~~~~~~~~~~r~i~~~~~~~~~~~~e~riLv~v 468 (806)
+.-.++..-....--.++++ -++.+|+.+.+-.+.+|..+-++-..-+ ...||+.|+
T Consensus 158 LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkIrM~qlR~Vs---------k~EkIlFPi 214 (375)
T COG1883 158 LAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKIRMTQLRTVS---------KREKILFPI 214 (375)
T ss_pred cCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHhhhhcccccc---------chhhhhhhH
No 210
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=27.14 E-value=7.9e+02 Score=27.38 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=38.5
Q ss_pred hhhhHHHHHHhccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 003629 323 GLLLPLYFASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCMIPVRESLA 382 (806)
Q Consensus 323 ~~~~plfF~~~G~~idl~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~ 382 (806)
+++++...+-+=+.+|-..+.+ ...-.+..++++.++-.....+....+|.++.|.+.
T Consensus 114 ~fyIA~LI~GSILgmnRklLIk--~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m 171 (438)
T COG3493 114 DFYIAALIVGSILGMNRKLLIK--SLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMM 171 (438)
T ss_pred HHHHHHHHHhhhhhccHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeee
Confidence 5666666655555566555554 333344455666777777888888999999999754
No 211
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.88 E-value=6.3e+02 Score=25.02 Aligned_cols=127 Identities=15% Similarity=0.255 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHH--HHchhHhHHHHHHHhhcCCCCChhHHHHHHHHH
Q 003629 242 AFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTD--LIGIHAIFGAFVFGLTIPKGGDFVVRLMKKIQD 319 (806)
Q Consensus 242 ~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~--~~g~~~~lgafvaGl~l~~~~~~~~~l~~~l~~ 319 (806)
.+..++.+++.-.+..|. |+ +....+..+...+......+ ..-...+++++++=++... .++++.-...+..
T Consensus 38 ~i~ali~g~vyml~~~KV-~K----~G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay 111 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKV-PK----RGAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAY 111 (186)
T ss_pred HHHHHHHHHHHHHHHHHc-Cc----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 344455667777777887 43 11122222222111111121 2334566677777777754 3333222222111
Q ss_pred -----HHHhhhhHHHHHHhccc---------cc-hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003629 320 -----FVSGLLLPLYFASSGLK---------TD-VAKIRGVEAWGLLVLVISTACAGKILGTFVMALLCM 374 (806)
Q Consensus 320 -----~~~~~~~plfF~~~G~~---------id-l~~l~~~~~~~~~~~~i~~~~~~K~~~~~l~~~~~~ 374 (806)
...+-+.|++|..=... -+ .+.+.+..+.+...+.++..+++=++|+++..+..|
T Consensus 112 ~vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 112 AVFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11256677776543333 11 111211112233455566667778888888877664
No 212
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=26.57 E-value=2e+02 Score=31.12 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=68.7
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCC-CceEEEEcCCC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP-CSVAVLVDRGF 625 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~ap-c~V~ilvdrg~ 625 (806)
+.-.|-.+.... -.+...|++.|++.++.+||.-..+.....|. ..+..+.+...++++ .||++--|.|.
T Consensus 15 ~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~-------~~~~~~~~~~a~~~~~VPValHLDHg~ 85 (307)
T PRK05835 15 EGYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMGI-------DMAVGMVKIMCERYPHIPVALHLDHGT 85 (307)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCCh-------HHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 333444555555 57899999999999999999977665333332 146778888889998 99999999986
Q ss_pred CCCCCccccCCCCCCCceEEEEecCCc-cHHHHHHHHH---HHhhCCCeE
Q 003629 626 GCGAHLTVAEPAATVPKRVCIVFLGGP-DDRRALDLGG---RMAENSGVK 671 (806)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~i~v~~~Gg~-ddreaL~~a~---~ma~~~~~~ 671 (806)
+...-.... ...... |=|+|+. +.+|=++..+ ++|...++.
T Consensus 86 ~~e~i~~ai---~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~ 130 (307)
T PRK05835 86 TFESCEKAV---KAGFTS--VMIDASHHAFEENLELTSKVVKMAHNAGVS 130 (307)
T ss_pred CHHHHHHHH---HcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 411000000 000112 4567875 4555555544 445555554
No 213
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=26.43 E-value=1e+02 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=26.0
Q ss_pred eEeeccCCchHHHHHHHHHhcCccEEEeccccccc
Q 003629 554 STAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRR 588 (806)
Q Consensus 554 ~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~ 588 (806)
.-++-|...||..|.++|++.++|++|-|..++..
T Consensus 74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAKKVGADLIIRPLGGESP 108 (127)
T ss_dssp EEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB--
T ss_pred EEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCCC
Confidence 44677778999999999999999999999987653
No 214
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=25.98 E-value=2.2e+02 Score=30.55 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=52.4
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccC-CCCccccccccchHHHHHHHhhcC--CCceEEEEcC
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRG-EGEEEIDSVSHGWREVNRTVLLNA--PCSVAVLVDR 623 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~-~~~~~~~~~~~~~~~v~~~vl~~a--pc~V~ilvdr 623 (806)
+..-|-.+.... ..+...|++.|++.++.+||.-..+.-.. .|. ..+....+...+++ ..||.+--|+
T Consensus 16 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~-------~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 16 EGYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYIAGL-------GAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhccCCH-------HHHHHHHHHHHHhccCCCcEEEECCC
Confidence 333444555555 57899999999999999999876654333 332 14777888889999 8999999999
Q ss_pred CCC
Q 003629 624 GFG 626 (806)
Q Consensus 624 g~~ 626 (806)
|.+
T Consensus 87 g~~ 89 (288)
T TIGR00167 87 GAS 89 (288)
T ss_pred CCC
Confidence 864
No 215
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.98 E-value=2.5e+02 Score=30.94 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=51.9
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccC-CCCccccccc--------cchHHHHHHHhhcCCCce
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRG-EGEEEIDSVS--------HGWREVNRTVLLNAPCSV 617 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~-~~~~~~~~~~--------~~~~~v~~~vl~~apc~V 617 (806)
+.--|-.+.... ..+.+.|++.|++.++..||.-..+.... .+.+ ++..+ ..+....+...+++++||
T Consensus 14 ~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPV 90 (345)
T cd00946 14 NGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKG-LKNEKQKASIAGAIAAAHHVRSMAEHYGVPV 90 (345)
T ss_pred CCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCcc-ccccchhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 333343455444 57899999999999999999887653322 1110 11000 036677788999999999
Q ss_pred EEEEcCCCC
Q 003629 618 AVLVDRGFG 626 (806)
Q Consensus 618 ~ilvdrg~~ 626 (806)
++-.|.|..
T Consensus 91 alHLDHg~~ 99 (345)
T cd00946 91 VLHTDHCAK 99 (345)
T ss_pred EEECCCCCC
Confidence 999999864
No 216
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=25.80 E-value=9.5e+02 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=20.0
Q ss_pred HhhhccCCChhHHHHHHHhhcCccc
Q 003629 46 FLIKPLRQPKVIAEILGGILLGPSA 70 (806)
Q Consensus 46 ~l~~rl~~P~iv~~ilaGillGP~~ 70 (806)
.+...+|+|+++.-+++|..++-++
T Consensus 89 ~iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 89 TIVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999988543
No 217
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=25.71 E-value=4.7e+02 Score=28.75 Aligned_cols=136 Identities=11% Similarity=-0.030 Sum_probs=70.2
Q ss_pred ccccccchHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCCCCCCCceEEEEecCCccHHHHHHHHHHHhhCCCeEEEE
Q 003629 595 IDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTL 674 (806)
Q Consensus 595 ~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~~~~~~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltv 674 (806)
++..-....++.+.|-+..+.++-|-+.-+.. . .+.||.+-+|++++++++.+...+. .
T Consensus 187 lenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~------------~-------~~~~G~~~~e~~~~~~~l~~~G~vd--~ 245 (343)
T cd04734 187 LENRMRFLLEVLAAVRAAVGPDFIVGIRISGD------------E-------DTEGGLSPDEALEIAARLAAEGLID--Y 245 (343)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh------------h-------ccCCCCCHHHHHHHHHHHHhcCCCC--E
Confidence 44443456778888877766665444332211 0 1246888899999999998765322 2
Q ss_pred EEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhcCCCcEEEEEEEeCChHHHHHHhcccCCCcEEEEccCC-
Q 003629 675 VRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGR- 753 (806)
Q Consensus 675 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~- 753 (806)
+++.... ... ......... ..........++.+.+++..+.+|...=. +.+.++....+++ .++|+|.+||.-
T Consensus 246 i~vs~g~-~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ik~~~~ipvi~~G~-i~~~~~~~~~l~~-~~~D~V~~gR~~l 319 (343)
T cd04734 246 VNVSAGS-YYT-LLGLAHVVP--SMGMPPGPFLPLAARIKQAVDLPVFHAGR-IRDPAEAEQALAA-GHADMVGMTRAHI 319 (343)
T ss_pred EEeCCCC-CCc-ccccccccC--CCCCCcchhHHHHHHHHHHcCCCEEeeCC-CCCHHHHHHHHHc-CCCCeeeecHHhH
Confidence 3322111 000 000000000 00111122345667777655545444332 3456666666643 349999999997
Q ss_pred CCcc
Q 003629 754 FPST 757 (806)
Q Consensus 754 ~~~~ 757 (806)
.++-
T Consensus 320 adP~ 323 (343)
T cd04734 320 ADPH 323 (343)
T ss_pred hCcc
Confidence 3443
No 218
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.57 E-value=2e+02 Score=30.69 Aligned_cols=69 Identities=12% Similarity=0.037 Sum_probs=51.7
Q ss_pred eEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccCCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCC
Q 003629 549 VTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFG 626 (806)
Q Consensus 549 v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~ 626 (806)
--|-.+.... ..+...+++.|++.++.+||.-..+.-...|. ..+....+...+++..||.+--|+|..
T Consensus 18 yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~-------~~~~~~~~~~A~~~~vPV~lHLDH~~~ 86 (283)
T PRK07998 18 VLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQLSGY-------DYIYEIVKRHADKMDVPVSLHLDHGKT 86 (283)
T ss_pred CEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHhhCCH-------HHHHHHHHHHHHHCCCCEEEECcCCCC
Confidence 3343455444 46899999999999999999876654333332 157778889999999999999999853
No 219
>PRK04148 hypothetical protein; Provisional
Probab=24.49 E-value=92 Score=29.24 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.2
Q ss_pred eEeeccCCchHHHHHHHHHhcCccEEEeccccccc
Q 003629 554 STAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRR 588 (806)
Q Consensus 554 ~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~ 588 (806)
.-++-|..+|+..|.++|++.++|++|-|..++..
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 34566778999999999999999999999988653
No 220
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=24.41 E-value=2e+02 Score=33.22 Aligned_cols=111 Identities=13% Similarity=0.020 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHHHhhCCCeEE--EEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhc-CCCcEEEEEEEe
Q 003629 652 PDDRRALDLGGRMAENSGVKV--TLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRK-CDGSVECEEKVM 728 (806)
Q Consensus 652 ~ddreaL~~a~~ma~~~~~~l--tvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~e~~v 728 (806)
+|.+...+....++.||++-- .|+-. -.. ...-+.+.++.+.+ ...++.+....-
T Consensus 173 ~d~~~~~r~L~g~~~hPNvgg~vLvvgL-GCE---------------------~~~~~~l~~~i~~~~~~~~v~~l~iQ~ 230 (507)
T TIGR03248 173 PDAIVPIRTLRNIALNPNFGGEAMVVGL-GCE---------------------KLQPERLLPEDTSPAGLGDAGVYRLQD 230 (507)
T ss_pred cHHHHHHHHHHHhccCCccCCEEEEEEe-Ccc---------------------cCCHHHHHHhhccccCCCceEEEEEEc
Confidence 444555677888999999973 43421 011 00123445555323 335666665543
Q ss_pred CC--h----HHHHHHhcccC-------C--CcE--EEEccCCCCccccccccccCCCCcccccchhhhhcCCCCCcccEE
Q 003629 729 GT--V----KDEVLKIGQSR-------D--YEL--VVAGKGRFPSTALAELADHQPENVGLGPIGNILASSDHGILASVL 791 (806)
Q Consensus 729 ~~--~----~~~~~~i~~~~-------~--~DL--iivG~~~~~~~~~~gl~~~w~e~~elG~igd~las~d~~~~~svl 791 (806)
.. . ++.+..++++. . .++ .+||-.-+.|.-++|++- +|-+|...|.|++. .-++||
T Consensus 231 ~g~g~~~ti~~g~~~~~~l~~~a~~~~R~~~pls~L~vGl~CGGSD~~SGitA----NPavG~~sD~LV~~---GGt~il 303 (507)
T TIGR03248 231 ERHGFAAMIEAIMEMAERRLAKLNRRRRETVPASELVVGMQCGGSDAFSGVTA----NPAVGFAADLLVRA---GATVMF 303 (507)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhhhCCcccCCHHHcEEEeecCCCCCcccccc----ChHHHHHHHHHHHc---CCeEEe
Confidence 22 2 12222222221 1 332 566666556666788877 99999999999996 544544
No 221
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=24.01 E-value=3.9e+02 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.2
Q ss_pred eEEEEecCCccHHHHHHHHHHH
Q 003629 643 RVCIVFLGGPDDRRALDLGGRM 664 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~m 664 (806)
++++.|.||.|+--|+..+.+.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~ 22 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE 22 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc
Confidence 4789999999999999888883
No 222
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=23.56 E-value=2.4e+02 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=25.8
Q ss_pred CceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 003629 641 PKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQ 680 (806)
Q Consensus 641 ~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~ 680 (806)
..++++.|.||-|+ .+|..|....++.++-+||..+
T Consensus 3 ~gk~l~LlSGGiDS----pVAa~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 3 QGKALALLSGGIDS----PVAAWLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp T-EEEEE-SSCCHH----HHHHHHHHCBT-EEEEEEEE-T
T ss_pred CceEEEEecCCccH----HHHHHHHHHCCCEEEEEEEECC
Confidence 35899999999999 4555555566999999999843
No 223
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=23.35 E-value=2.8e+02 Score=30.59 Aligned_cols=77 Identities=9% Similarity=0.010 Sum_probs=52.4
Q ss_pred CceEEEEeEeeccCCchHHHHHHHHHhcCccEEEecccccccC-CCCcccc--------ccccchHHHHHHHhhcCCCce
Q 003629 547 RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRG-EGEEEID--------SVSHGWREVNRTVLLNAPCSV 617 (806)
Q Consensus 547 ~~v~v~~~~~vs~~~~~~~dI~~~A~~~~~~lIil~~h~~~~~-~~~~~~~--------~~~~~~~~v~~~vl~~apc~V 617 (806)
+..-|-.+.... ..+...|++.|++.++.+||.-..+.... .|.. ++ .+...+....+...+++++||
T Consensus 19 ~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPV 95 (350)
T PRK09197 19 NGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKG-VKDDGQGAAVLGAIAGAKHVHEVAEHYGVPV 95 (350)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCcc-ccccchhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 444444565555 57899999999999999999876654332 2210 00 000015567788999999999
Q ss_pred EEEEcCCCC
Q 003629 618 AVLVDRGFG 626 (806)
Q Consensus 618 ~ilvdrg~~ 626 (806)
++--|+|..
T Consensus 96 alHLDHg~~ 104 (350)
T PRK09197 96 ILHTDHCAK 104 (350)
T ss_pred EEECCCCCC
Confidence 999999864
No 224
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=23.16 E-value=1e+03 Score=26.07 Aligned_cols=59 Identities=24% Similarity=0.257 Sum_probs=33.5
Q ss_pred hhhccCCChhHHHHHHHhhcCcccCCCchhhhcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 003629 47 LIKPLRQPKVIAEILGGILLGPSALGRNKEYLHLMFPSWSTPILESVASIGLLFFLFLVG 106 (806)
Q Consensus 47 l~~rl~~P~iv~~ilaGillGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 106 (806)
+...+|+|+++.-+++|..++-++.=. ...++.=+-+++.--++.-+.+|..+.++..|
T Consensus 54 ii~~~RlPRil~a~l~G~~LalsG~ll-Q~l~rNpLa~P~iLGissGA~lg~~~~~~~~~ 112 (330)
T PRK10440 54 VVTEWRLPRVLMALLIGAALGVSGAIF-QSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFG 112 (330)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcHhhHHHHHHHHHHHHHHHHh
Confidence 566779999999999999998544211 00111001122333455556677666554433
No 225
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.51 E-value=5.1e+02 Score=24.98 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCC----------CCChhHHHHHHHHHH
Q 003629 294 FGAFVFGLTIPK----------GGDFVVRLMKKIQDF 320 (806)
Q Consensus 294 lgafvaGl~l~~----------~~~~~~~l~~~l~~~ 320 (806)
.-.|++++.+|- -.....++++++|++
T Consensus 130 vlv~~F~il~Pv~L~lvHASLRLRnikNkleN~iEsi 166 (188)
T KOG4050|consen 130 VLVFAFAILFPVLLVLVHASLRLRNIKNKLENKIESI 166 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 455667777662 123445666777766
No 226
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=22.42 E-value=1.5e+03 Score=27.94 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHhcCccEEEecccc
Q 003629 561 STMHEDIFHVAEEKRVAMIVLPFHK 585 (806)
Q Consensus 561 ~~~~~dI~~~A~~~~~~lIil~~h~ 585 (806)
++++..|++..+|+++++ ||..
T Consensus 784 ~~l~~~I~~~fre~gI~i---pfpq 805 (835)
T COG3264 784 SELNRAILDRFRENGIEI---PFPQ 805 (835)
T ss_pred HHHHHHHHHHHHHcCCCC---CCch
Confidence 467888888999988886 7755
No 227
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=22.38 E-value=1.7e+02 Score=30.66 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhCCCeEEEEE
Q 003629 655 RRALDLGGRMAENSGVKVTLV 675 (806)
Q Consensus 655 reaL~~a~~ma~~~~~~ltvv 675 (806)
.+.++...+++..++.++.++
T Consensus 14 ~~i~~~~~~lag~~~~rI~~i 34 (250)
T TIGR02069 14 REILREFVSRAGGEDAIIVII 34 (250)
T ss_pred HHHHHHHHHHhCCCCceEEEE
Confidence 456677778888888777755
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=22.21 E-value=2.4e+02 Score=29.72 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=14.8
Q ss_pred ceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEE
Q 003629 642 KRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVR 676 (806)
Q Consensus 642 ~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~ 676 (806)
+||++. ||-|- ..++.+.+|+. +++++-
T Consensus 74 k~VLIi--GGGDG----g~~REvLkh~~-~v~mVe 101 (262)
T PRK00536 74 KEVLIV--DGFDL----ELAHQLFKYDT-HVDFVQ 101 (262)
T ss_pred CeEEEE--cCCch----HHHHHHHCcCC-eeEEEE
Confidence 456554 55553 23344445554 777763
No 229
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=21.54 E-value=6.5e+02 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=27.5
Q ss_pred eEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeec
Q 003629 643 RVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQ 680 (806)
Q Consensus 643 ~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~ 680 (806)
++++.|.||.|+--++.++.+. +.+++.++|...
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 4789999999998888888763 677888888643
No 230
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.29 E-value=8.4e+02 Score=26.03 Aligned_cols=84 Identities=18% Similarity=0.329 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhcchhHHH---HHHHhhcccCCCCHHHHHH---HHHHHHHHHH
Q 003629 351 LVLVISTACAGKILGTFVMALLCMIPVRESLALGVLMNTKGLVEL---IVLNIGREKKVLNDEMFAI---LVVMALFTTF 424 (806)
Q Consensus 351 ~~~~i~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~m~~rG~v~l---~~~~~~~~~~ii~~~~~~~---lvl~v~v~t~ 424 (806)
...+++.++++=+.++|.....++.++.-++..|++++. .++.+ ++.+.....+ ...+.... +++++++..+
T Consensus 19 G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl-~I~~lDR~ivss~~~~~~-~~~~~~~~~~R~~lAvliaiv 96 (301)
T PF14362_consen 19 GAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGL-VIFNLDRFIVSSIRKSDG-SRKRLLQALPRLLLAVLIAIV 96 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-HHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777788777666666654321 11111 2222222222 11222222 4466666667
Q ss_pred hhHHHHHHHhcc
Q 003629 425 MTTPMVMAIYKP 436 (806)
Q Consensus 425 i~~pl~~~l~~~ 436 (806)
++.|+.-.++++
T Consensus 97 Is~pl~l~iF~~ 108 (301)
T PF14362_consen 97 ISEPLELKIFEK 108 (301)
T ss_pred HHHHHHHHHHHH
Confidence 778888888765
No 231
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=21.22 E-value=6.3e+02 Score=28.47 Aligned_cols=107 Identities=6% Similarity=0.006 Sum_probs=67.8
Q ss_pred eEeeccCC-chHHHHHHHHHhcCccEEEecccccccCCCC-ccccccccchHHHHHHHhhcCCCce-EEEEcCCCCCCCC
Q 003629 554 STAISALS-TMHEDIFHVAEEKRVAMIVLPFHKQRRGEGE-EEIDSVSHGWREVNRTVLLNAPCSV-AVLVDRGFGCGAH 630 (806)
Q Consensus 554 ~~~vs~~~-~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~-~~~~~~~~~~~~v~~~vl~~apc~V-~ilvdrg~~~~~~ 630 (806)
..+|+|-+ .+-+..++.|++++..++|.....+-..+|. +.|.- ..|+....++.++.-++. -++.-+.+.++..
T Consensus 16 i~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP--~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~ 93 (421)
T PRK15052 16 ICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTP--ADFREFVYGIADKVGFPRERIILGGDHLGPNC 93 (421)
T ss_pred eeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCH--HHHHHHHHHHHHHcCCChhcEEeecCCCCCcc
Confidence 34565433 5667777789999999999988766544433 22221 148888889999988886 3332222223222
Q ss_pred ccccCCCCCCCceEEEEecCCccHHHHHHHHHHHhhC-CCeEEEEEEeeec
Q 003629 631 LTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAEN-SGVKVTLVRFVHQ 680 (806)
Q Consensus 631 ~~~~~~~~~~~~~i~v~~~Gg~ddreaL~~a~~ma~~-~~~~ltvv~~~~~ 680 (806)
++ ....+||++.|.+|... -.+--+.+|+..+
T Consensus 94 -Wq-----------------~~pa~eAM~~A~~li~ayV~AGF~kIHLD~S 126 (421)
T PRK15052 94 -WQ-----------------QEPADAAMEKSVELVKAYVRAGFSKIHLDAS 126 (421)
T ss_pred -cc-----------------CCCHHHHHHHHHHHHHHHHHcCCceEEecCC
Confidence 22 12789999999999755 4555677776543
No 232
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.10 E-value=7.4e+02 Score=28.15 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhHHHHHHhccccch
Q 003629 314 MKKIQDFVSGLLLPLYFASSGLKTDV 339 (806)
Q Consensus 314 ~~~l~~~~~~~~~plfF~~~G~~idl 339 (806)
...++..+++.++.+||..+|+.+.-
T Consensus 59 ~~~l~~wiNDgLMaiFFf~vGLEiKr 84 (423)
T PRK14853 59 SLSLGTWAADGLLAIFFFVVGLELKR 84 (423)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHhH
Confidence 34566677899999999999999964
No 233
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=20.78 E-value=1e+02 Score=32.10 Aligned_cols=51 Identities=31% Similarity=0.459 Sum_probs=32.7
Q ss_pred chHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCCCCCCCceEEEEecCCccHHH------HHHHHHHHhhCCCe
Q 003629 601 GWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRR------ALDLGGRMAENSGV 670 (806)
Q Consensus 601 ~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~~~~~~~~i~v~~~Gg~ddre------aL~~a~~ma~~~~~ 670 (806)
..||++ ..++. |+|+|+||.|.. -..+|--+| |++|| +.+-.+++|...++
T Consensus 12 GVRSmA-t~vet--~dv~ILiDpGVs------------LaPkRy~LP----Ph~~E~erl~~~r~~i~~~ak~a~V 68 (304)
T COG2248 12 GVRSMA-TFVET--KDVGILIDPGVS------------LAPKRYGLP----PHQRELERLRQAREKIQRYAKKADV 68 (304)
T ss_pred chhhhh-heeec--CCeeEEECCccc------------cCccccCCC----CCHHHHHHHHHHHHHHHHHHhhCCE
Confidence 466666 44454 999999999863 233455556 88887 33444577766554
No 234
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.76 E-value=7.3e+02 Score=26.94 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=81.5
Q ss_pred chHHHHHHHHHhcCccEEEecccccc----c-CCCCccccccccchHHHHHHHhhcCCCceEEEEcCCCCCCCCccccCC
Q 003629 562 TMHEDIFHVAEEKRVAMIVLPFHKQR----R-GEGEEEIDSVSHGWREVNRTVLLNAPCSVAVLVDRGFGCGAHLTVAEP 636 (806)
Q Consensus 562 ~~~~dI~~~A~~~~~~lIil~~h~~~----~-~~~~~~~~~~~~~~~~v~~~vl~~apc~V~ilvdrg~~~~~~~~~~~~ 636 (806)
.+++.. +.+.+..+|.|=+-.+=.. . -.|.. +..+-....++.+.|.+...++|.+-+..|..
T Consensus 78 ~~~~aa-~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~-ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~---------- 145 (321)
T PRK10415 78 EMADAA-RINVESGAQIIDINMGCPAKKVNRKLAGSA-LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA---------- 145 (321)
T ss_pred HHHHHH-HHHHHCCCCEEEEeCCCCHHHHcCCCcccH-HhcCHHHHHHHHHHHHHhcCCceEEEEEcccc----------
Confidence 444333 3445677888877554211 0 01110 11111245666666666556666654333321
Q ss_pred CCCCCceEEEEecCCccHHHHHHHHHHHhhCCCeEEEEEEeeecCCCCccCCccccccccCCCccccchHHHHHHHHHhc
Q 003629 637 AATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDISTENGISLDEAAVDDFMRK 716 (806)
Q Consensus 637 ~~~~~~~i~v~~~Gg~ddreaL~~a~~ma~~~~~~ltvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 716 (806)
+++.++.+++.++.+..--.+|+ | ..+.. +......|-+++++++++
T Consensus 146 ---------------~~~~~~~~~a~~le~~G~d~i~v-h---~rt~~--------------~~~~G~a~~~~i~~ik~~ 192 (321)
T PRK10415 146 ---------------PEHRNCVEIAQLAEDCGIQALTI-H---GRTRA--------------CLFNGEAEYDSIRAVKQK 192 (321)
T ss_pred ---------------CCcchHHHHHHHHHHhCCCEEEE-e---cCccc--------------cccCCCcChHHHHHHHHh
Confidence 23356778888876664333432 2 11000 011112345788888876
Q ss_pred CCCcEEEEEEEeCChHHHHHHhcccCCCcEEEEccCC-CCcccccccc
Q 003629 717 CDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGR-FPSTALAELA 763 (806)
Q Consensus 717 ~~~~v~~~e~~v~~~~~~~~~i~~~~~~DLiivG~~~-~~~~~~~gl~ 763 (806)
.+-+|.+.=- +.+.++....+++ .++|.+++||.- .|+-+...+.
T Consensus 193 ~~iPVI~nGg-I~s~~da~~~l~~-~gadgVmiGR~~l~nP~if~~~~ 238 (321)
T PRK10415 193 VSIPVIANGD-ITDPLKARAVLDY-TGADALMIGRAAQGRPWIFREIQ 238 (321)
T ss_pred cCCcEEEeCC-CCCHHHHHHHHhc-cCCCEEEEChHhhcCChHHHHHH
Confidence 5555544433 5567776666654 349999999998 4665555543
No 235
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.57 E-value=3.4e+02 Score=26.45 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHhhCCCeEEEEEE
Q 003629 651 GPDDRRALDLGGRMAENSGVKVTLVR 676 (806)
Q Consensus 651 g~ddreaL~~a~~ma~~~~~~ltvv~ 676 (806)
.|.|.|+++.|.+|++ .+.+++++-
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~ 42 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALV 42 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEE
Confidence 5889999999999987 455666663
No 236
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=20.54 E-value=7.1e+02 Score=28.05 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=67.3
Q ss_pred eEeeccCC-chHHHHHHHHHhcCccEEEecccccccCCCC-ccccccccchHHHHHHHhhcCCCce-EEEEcCCCCCCCC
Q 003629 554 STAISALS-TMHEDIFHVAEEKRVAMIVLPFHKQRRGEGE-EEIDSVSHGWREVNRTVLLNAPCSV-AVLVDRGFGCGAH 630 (806)
Q Consensus 554 ~~~vs~~~-~~~~dI~~~A~~~~~~lIil~~h~~~~~~~~-~~~~~~~~~~~~v~~~vl~~apc~V-~ilvdrg~~~~~~ 630 (806)
..+|+|-+ .+-+..++.|++++..++|.....+-..+|. +.|.- ..|+....++.++.-++. -++.-+.+.++..
T Consensus 15 I~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP--~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~ 92 (420)
T TIGR02810 15 IYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTP--ADFRDFVETIADRIGFPRDRLILGGDHLGPNP 92 (420)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCH--HHHHHHHHHHHHHcCCChhcEEeecCCCCCcc
Confidence 45565433 5667777789999999999988766544433 22221 148888889999988886 3332222222211
Q ss_pred ccccCCCCCCCceEEEEecCCccHHHHHHHHHHHhhC-CCeEEEEEEeeec
Q 003629 631 LTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAEN-SGVKVTLVRFVHQ 680 (806)
Q Consensus 631 ~~~~~~~~~~~~~i~v~~~Gg~ddreaL~~a~~ma~~-~~~~ltvv~~~~~ 680 (806)
+ + --..+||++.|.+|... -.+--+.+|+..+
T Consensus 93 W-q-----------------~lpa~eAM~~A~~li~ayV~AGF~kIHLD~S 125 (420)
T TIGR02810 93 W-Q-----------------HLPADEAMAKAAALVDAYVEAGFTKIHLDAS 125 (420)
T ss_pred c-c-----------------CCCHHHHHHHHHHHHHHHHHcCCceEEecCC
Confidence 1 1 24689999999999755 4555677776543
No 237
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=20.24 E-value=2e+02 Score=25.95 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCCCcccCCCCCCccHHHHHHHHHHHHH-HHHHHHHhhhccCCChhHHHHHHHhhcCcc
Q 003629 12 SSDGAWQGDNPLNFAFPLLIIQTALVLL-TSHCLAFLIKPLRQPKVIAEILGGILLGPS 69 (806)
Q Consensus 12 ~~~g~~~~~~pl~~~l~~~l~~i~lil~-~~~~~~~l~~rl~~P~iv~~ilaGillGP~ 69 (806)
+.+|.-.-..|+++++|--+.-=.+..+ +..++. .+....--.+.-.++.|++.||+
T Consensus 53 ~~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~-~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 53 TRYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLY-YYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred cCCCcceecCCCccCcchhhHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHhhhccchH
Confidence 3455556688999998753332111111 111111 12222333456678899999996
No 238
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=20.20 E-value=1.3e+03 Score=26.18 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=27.1
Q ss_pred CchHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003629 110 DLSSIRQNGKSAFKIALAGITLPFLLGAGVSLFLQKA 146 (806)
Q Consensus 110 d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~ 146 (806)
|.+.+.|.+.+..........+..++|..++..+...
T Consensus 67 ~~k~~gr~g~ktl~yf~~tt~~A~~iGl~~~~~~~Pg 103 (415)
T COG1301 67 DLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPG 103 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4777888888888777777777777777777776543
No 239
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.13 E-value=6.1e+02 Score=28.31 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhHHHHHHhccccchhh
Q 003629 316 KIQDFVSGLLLPLYFASSGLKTDVAK 341 (806)
Q Consensus 316 ~l~~~~~~~~~plfF~~~G~~idl~~ 341 (806)
.++..+++.++.+||..+|+.+.-..
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~ 80 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREI 80 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666789999999999999997443
Done!