Query 003629
Match_columns 806
No_of_seqs 280 out of 2323
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 17:37:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003629.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1680-1684//hhsearch_pdb/003629hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olq_A Universal stress protei 1.0 1 1 206.9 15.0 293 461-801 7-311 (319)
2 3mt0_A Uncharacterized protein 1.0 1 1 204.9 19.8 268 461-801 7-282 (290)
3 3loq_A Universal stress protei 1.0 1 1 196.3 16.9 269 461-797 22-292 (294)
4 3cis_A Uncharacterized protein 1.0 1 1 194.8 21.0 281 458-796 16-307 (309)
5 1zcd_A Na(+)/H(+) antiporter 1 1.0 1 1 191.3 11.4 302 88-433 58-383 (388)
6 3ab8_A Putative uncharacterize 1.0 1 1 182.4 19.5 261 463-794 2-268 (268)
7 3s3t_A Nucleotide-binding prot 1.0 1 1 115.3 10.0 137 461-620 5-145 (146)
8 3hgm_A Universal stress protei 1.0 1 1 114.0 6.6 140 462-620 3-147 (147)
9 3fg9_A Protein of universal st 1.0 1 1 112.4 7.3 139 459-620 13-155 (156)
10 3dlo_A Universal stress protei 1.0 1 1 111.3 11.0 131 460-620 23-154 (155)
No 1
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=1.00 E-value=1 Score=206.93 Aligned_cols=293 Identities=11% Similarity=0.043 Sum_probs=196.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 72489974299984568999986305899973389999854069884025665421079985311124788602799999
Q 003629 461 EFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540 (806)
Q Consensus 461 e~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~ 540 (806)
-.+||||+|+++++..++..+..++ ++.++.++++|+++....................... +..++.++.+
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 78 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIV--QRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVI------NQKTAWIKQQ 78 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHH--HHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHCCCEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHH
T ss_conf 1639999789756589999999999--9729928999972364432212367345899999999------9999999999
Q ss_pred HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 99741573499974765169965898999987238659996265444479972112456240899999861099845999
Q 003629 541 EAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 541 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~V~il 620 (806)
.......++.++..+... ++..+.|++.|++.++||||||+|++.+.++. .+|++..+|+++++|||+++
T Consensus 79 ~~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~--------~~Gs~~~~vl~~~~~PVlvv 148 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSL--------IFTPLDWQLLRKCPAPVWMV 148 (319)
T ss_dssp HHHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSC--------BCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCHHHCC--------CCCCCHHHHHHCCCCCEEEE
T ss_conf 998750598389999965--98599999999852999899926767622200--------00664788974599878996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 827899887744467889988449998158921-------899999999974189--84999999662688775578655
Q 003629 621 VDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPD-------DRRALDLGGRMAENS--GVKVTLVRFVHQASGAATGGIAE 691 (806)
Q Consensus 621 vdrg~~~~~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAl~~a~~la~~~--~~~ltlv~v~~~~~~~~~~~~~~ 691 (806)
+... .....+|+++++|+++ ++.|+++|.++++.. +++++++++.++..... ...
T Consensus 149 --~~~~-----------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~---~~~ 212 (319)
T 3olq_A 149 --KDKE-----------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI---AIE 212 (319)
T ss_dssp --ESSC-----------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC---CTT
T ss_pred --CCCC-----------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH---HCC
T ss_conf --3765-----------666780899978987433688998999999999997456897089999615853544---314
Q ss_pred CCCCC--CCCCCCCCHHHHHHHHHHHCCC-CCEEEEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 55566--7873200107999999875189-95799999927937899994014899689985699996433333445898
Q 003629 692 RATSD--ISTENGISLDEAAVDDFMRKCD-GSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPE 768 (806)
Q Consensus 692 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~-~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivG~~~~~~~~~~Gl~~~w~e 768 (806)
....+ ...++.++..++.++++.++.. ..+.+ ....++..+.+....+..++||+|||+++ ++|+.+ |
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~g~~~~~I~~~a~~~~~dLiV~G~~g-----~~~~~~-~-- 283 (319)
T 3olq_A 213 LPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKT-HVKEGLPEQVIPQVCEELNAGIVVLGILG-----RTGLSA-A-- 283 (319)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGE-EEEESCHHHHHHHHHHHTTEEEEEEECCS-----CCSTHH-H--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCHHHHHHHHHHHCCCEEEEECCC-----CCCCCC-C--
T ss_conf 88545789999999999999999999828995617-98348808999999987389999995057-----667764-0--
Q ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 864441112121389998300898952065621
Q 003629 769 NVGLGPIGNILASSDHGILASVLVIQQHNAADI 801 (806)
Q Consensus 769 ~~~lG~igd~las~~~~~~~svlvvqq~~~~~~ 801 (806)
.+|++.+.+..+ +++|||||+.+....|
T Consensus 284 --~~Gsv~~~vl~~---~~~pVLvv~~~~~~~p 311 (319)
T 3olq_A 284 --FLGNTAEQLIDH---IKCDLLAIKPDGFTCP 311 (319)
T ss_dssp --HHHHHHHHHHTT---CCSEEEEECCTTCCCC
T ss_pred --CCCHHHHHHHHH---CCCCEEEECCCCCCCC
T ss_conf --021799999851---8998899898888799
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=204.87 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=193.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 72489974299984568999986305899973389999854069884025665421079985311124788602799999
Q 003629 461 EFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540 (806)
Q Consensus 461 e~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~ 540 (806)
-.+||+|+|+++.+..++..+..++ ++.+++++++|+++ + . + .++.++.+
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~-~---------~----~--------------~~~~l~~~ 56 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIA--GVTQSHLHLLVCEK-R---------R----D--------------HSAALNDL 56 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHH--HHHCCEEEEEEECS-S---------S----C--------------CHHHHHHH
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHH--HHCCCEEEEEEEEC-C---------H----H--------------HHHHHHHH
T ss_conf 2059999589856469999999999--85298499999608-4---------8----8--------------99999999
Q ss_pred HHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 99741573499974765169965898999987238659996265444479972112456240899999861099845999
Q 003629 541 EAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVAVL 620 (806)
Q Consensus 541 ~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~V~il 620 (806)
.+.....++.++..+..+ ++.++.|++.|++.++|+||||+|+++++++. .+|++.++++++++|||+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~--------~~gs~~~~vl~~~~~PVlvv 126 (290)
T 3mt0_A 57 AQELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA--------ILTPDDWKLLRFAPCPVLMT 126 (290)
T ss_dssp HHHHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT--------SCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHCCCEEEEEEEEC--CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHC--------CCCHHHHHHHHCCCCCEEEE
T ss_conf 998762797589999967--98799999999845999999914568732210--------21777899986399878995
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 827899887744467889988449998158921-------8999999999741898499999966268877557865555
Q 003629 621 VDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPD-------DRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERA 693 (806)
Q Consensus 621 vdrg~~~~~~~~~~~~~~~~~~~I~v~f~Gg~d-------dreAl~~a~~la~~~~~~ltlv~v~~~~~~~~~~~~~~~~ 693 (806)
+.... . ...+|+++++|+++ ++.|+++|.++++..+++++++++.++..... .. .
T Consensus 127 --~~~~~----------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~~---~- 188 (290)
T 3mt0_A 127 --KTARP----------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS-AD---P- 188 (290)
T ss_dssp --CCCSC----------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--------------
T ss_pred --CCCCC----------C-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-CC---C-
T ss_conf --27877----------7-78839999778876504667899999999999987398699999966764334-57---2-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC-CCCCEEEEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56678732001079999998751-89957999999279378999940148996899856999964333334458988644
Q 003629 694 TSDISTENGISLDEAAVDDFMRK-CDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGL 772 (806)
Q Consensus 694 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivG~~~~~~~~~~Gl~~~w~e~~~l 772 (806)
.....+...+..++.++++.++ ....+. .....++..+.+....+..++||+|||+++ ++|+.+ | .+
T Consensus 189 -~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g-----~~~~~~-~----~~ 256 (290)
T 3mt0_A 189 -TFQLSETIEARYREACRTFQAEYGFSDEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA-----RTGLSG-A----LI 256 (290)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCCTTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS-----SCCGGG-C----CS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCHHHHHHHHHHHCCCCEEEECCCC-----CCCCCC-E----EC
T ss_conf -25789999999999999999981999436-999335888999999876299999978888-----767755-3----43
Q ss_pred CCCHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf 41112121389998300898952065621
Q 003629 773 GPIGNILASSDHGILASVLVIQQHNAADI 801 (806)
Q Consensus 773 G~igd~las~~~~~~~svlvvqq~~~~~~ 801 (806)
|++.+.+..+ +++|||||+.+....|
T Consensus 257 Gsv~~~vl~~---~~~pVLvv~~~~~~~p 282 (290)
T 3mt0_A 257 GNTAEVVLDT---LESDVLVLKPDDIIAH 282 (290)
T ss_dssp CHHHHHHHTT---CSSEEEEECCHHHHHH
T ss_pred CHHHHHHHHC---CCCCEEEECCCCCCCC
T ss_conf 5589999962---8998899898778885
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=196.31 Aligned_cols=269 Identities=10% Similarity=0.064 Sum_probs=190.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 72489974299984568999986305899973389999854069884025665421079985311124788602799999
Q 003629 461 EFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVASL 540 (806)
Q Consensus 461 e~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~ 540 (806)
-.|||||+|+++.+..++..+..++ ++.+++++++|+++.+...... . ........+.. .+..++.++.+
T Consensus 22 ~~~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~---~--~~~~~~~~~~~---~~~~~~~l~~~ 91 (294)
T 3loq_A 22 SNAMLLPTDLSENSFKVLEYLGDFK--KVGVEEIGVLFVINLTKLSTVS---G--GIDIDHYIDEM---SEKAEEVLPEV 91 (294)
T ss_dssp TCEEEEECCSCTGGGGGGGGHHHHH--HTTCCEEEEECCEECTTC----------CCCTTHHHHHH---HHHHHHHHHHH
T ss_pred HCCEEEECCCCHHHHHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCCC---C--CCCHHHHHHHH---HHHHHHHHHHH
T ss_conf 5308995179888999999999987--5169889999982476644445---5--64689999999---99999999999
Q ss_pred HHHHHCCCEEEEE-EEE-ECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 9974157349997-476-51699658989999872386599962654444799721124562408999998610998459
Q 003629 541 EAYNQLRRVTVRH-STA-ISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVA 618 (806)
Q Consensus 541 ~~~~~~~~v~v~~-~~~-vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~V~ 618 (806)
.+.....++.++. .+. . +++.+.| .+++.++|+||||+|+++++.+. .+|++.++|+++++|||+
T Consensus 92 ~~~~~~~g~~~~~~~v~~~---g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~--------~~Gs~~~~vl~~~~~PVl 158 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFPA---GDPVVEI--IKASENYSFIAMGSRGASKFKKI--------LLGSVSEGVLHDSKVPVY 158 (294)
T ss_dssp HHHHHHTTCEEEECSSCCE---ECHHHHH--HHHHTTSSEEEEECCCCCHHHHH--------HHCCHHHHHHHHCSSCEE
T ss_pred HHHHHHCCCCCCEEEEECC---CCHHHHE--EECCCCCCEEEECCCCCCCCCCE--------EECCHHHHHHHCCCCCEE
T ss_conf 9999976998504676135---7803712--55458999999847987653145--------644278999745799889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99827899887744467889988449998158921899999999974189849999996626887755786555556678
Q 003629 619 VLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSDIS 698 (806)
Q Consensus 619 ilvdrg~~~~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~~la~~~~~~ltlv~v~~~~~~~~~~~~~~~~~~~~~ 698 (806)
++ +.... . .....+|+++++|++++++|+++|.++++..+++++++++.++.
T Consensus 159 vv--~~~~~---~------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~----------------- 210 (294)
T 3loq_A 159 IF--KHDMV---V------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG----------------- 210 (294)
T ss_dssp EE--CCCTT---T------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSS-----------------
T ss_pred EE--CCCCC---C------CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-----------------
T ss_conf 96--67556---6------76677799997898799999999999763039989999974580-----------------
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 73200107999999875189957999999279378999940148996899856999964333334458988644411121
Q 003629 699 TENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIGNI 778 (806)
Q Consensus 699 ~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivG~~~~~~~~~~Gl~~~w~e~~~lG~igd~ 778 (806)
. ..+..+++.+.+.+ ....+.+ ....++..+.+....+..++||+|||+++ ++++.+ | .+|++.+.
T Consensus 211 ~--~~~~l~~~~~~l~~-~~~~~~~-~~~~g~~~~~I~~~a~~~~~dLlV~G~~~-----~~~~~~-~----~~Gs~~~~ 276 (294)
T 3loq_A 211 D--KTADLRVMEEVIGA-EGIEVHV-HIESGTPHKAILAKREEINATTIFMGSRG-----AGSVMT-M----ILGSTSES 276 (294)
T ss_dssp C--CHHHHHHHHHHHHH-TTCCEEE-EEECSCHHHHHHHHHHHTTCSEEEEECCC-----CSCHHH-H----HHHCHHHH
T ss_pred H--HHHHHHHHHHHHHH-CCCCEEE-EEECCCHHHHHHHHHHHCCCCEEEEECCC-----CCCCCC-E----EECCHHHH
T ss_conf 3--89999999999987-6995799-99369878999999976595999995799-----987653-5----62768999
Q ss_pred HHCCCCCCCCCEEEEEECC
Q ss_conf 2138999830089895206
Q 003629 779 LASSDHGILASVLVIQQHN 797 (806)
Q Consensus 779 las~~~~~~~svlvvqq~~ 797 (806)
+..+ +++|||+|++..
T Consensus 277 vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 277 VIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp HHHH---CSSCEEEECSCT
T ss_pred HHHC---CCCCEEEECCCC
T ss_conf 9964---999899978999
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=1.00 E-value=1 Score=194.80 Aligned_cols=281 Identities=12% Similarity=0.076 Sum_probs=189.1
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCH-HHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9987248997429998456899998630589997338999985406988402-566542107998531112478860279
Q 003629 458 SKDEFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSI-LTVQKTRKNGLPLVNRFRRAGMSHDQI 536 (806)
Q Consensus 458 ~~~e~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~i 536 (806)
.....+||||+|+++.+..+++.+..++ ++.+++++++|+++......+. ....+..+. .. +..++.
T Consensus 16 ~~~~~~ILv~~D~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~ 83 (309)
T 3cis_A 16 GNSSLGIIVGIDDSPAAQVAVRWAARDA--ELRKIPLTLVHAVSPEVATWLEVPLPPGVLRW----QQ------DHGRHL 83 (309)
T ss_dssp --CTTEEEEECCSSHHHHHHHHHHHHHH--HHHTCCEEEEEECCCCCCCTTCCCCCHHHHHH----HH------HHHHHH
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHH--HHCCCCEEEEEEECCCCCCCCCCCCCCHHHHH----HH------HHHHHH
T ss_conf 6778708999799877999999999999--86699299999965754445667788205689----99------999999
Q ss_pred HHHHHHHH-HC----CCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999974-15----73499974765169965898999987238659996265444479972112456240899999861
Q 003629 537 VASLEAYN-QL----RRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLL 611 (806)
Q Consensus 537 ~~~~~~~~-~~----~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~ 611 (806)
++.+.+.. .. .++.++..+.. +++.+.|++.|+ ++|+||||+|+++++.+. .+|++.++|++
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~--------~~Gs~~~~vl~ 150 (309)
T 3cis_A 84 IDDALKVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGR--------LLGSVSSGLLR 150 (309)
T ss_dssp HHHHHHHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTC--------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEC---CCHHHHHHHHHC--CCCEEEECCCCCCCCCCC--------CCCCHHHHHHH
T ss_conf 99999999873156889538999944---898999998725--899999878998654443--------05747999998
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 09984599982789988774446788998844999815892189999999997418984999999662688775578655
Q 003629 612 NAPCSVAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAE 691 (806)
Q Consensus 612 ~ApC~V~ilvdrg~~~~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~~la~~~~~~ltlv~v~~~~~~~~~~~~~~ 691 (806)
+++|||+++ +....... .....+|+++++|+++++.|+++|.++++..+++++++++.++..... .
T Consensus 151 ~~~~PVlvv--~~~~~~~~-------~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~--- 216 (309)
T 3cis_A 151 HAHCPVVII--HDEDSVMP-------HPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE--W--- 216 (309)
T ss_dssp HCSSCEEEE--CTTCCCSC-------SSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT--C---
T ss_pred HCCCCEEEE--CCCCCCCC-------CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC--C---
T ss_conf 489978997--47766677-------777873999927986899999999999875699899999961654467--7---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHC-----CCCCEEEEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5556678732001079999998751-----89957999999279378999940148996899856999964333334458
Q 003629 692 RATSDISTENGISLDEAAVDDFMRK-----CDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQ 766 (806)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivG~~~~~~~~~~Gl~~~w 766 (806)
.....++..+..++.+++...+ ....+.+. ...++..+ .+++.++++||+|||+++ ++++.+ |
T Consensus 217 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~I~~~a~~adliV~G~~~-----~~~~~~-~ 284 (309)
T 3cis_A 217 ---PGIDWPATQSMAEQVLAERLAGWQERYPNVAITRV-VVRDQPAR--QLVQRSEEAQLVVVGSRG-----RGGYAG-M 284 (309)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEE-EESSCHHH--HHHHHHTTCSEEEEESSC-----SSCCTT-C
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHH--HHHHHHCCCCEEEECCCC-----CCCCCC-C
T ss_conf ---85457889999999999999998864899718999-97179899--999863779999988899-----877641-3
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 988644411121213899983008989520
Q 003629 767 PENVGLGPIGNILASSDHGILASVLVIQQH 796 (806)
Q Consensus 767 ~e~~~lG~igd~las~~~~~~~svlvvqq~ 796 (806)
.+|++.+.+..+ ++++||||..+
T Consensus 285 ----l~Gsv~~~vl~~---~~~pVlvv~~~ 307 (309)
T 3cis_A 285 ----LVGSVGETVAQL---ARTPVIVARES 307 (309)
T ss_dssp ----SSCHHHHHHHHH---CSSCEEEECC-
T ss_pred ----CCCCHHHHHHHC---CCCCEEEECCC
T ss_conf ----327489999856---99888995798
No 5
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=1.00 E-value=1 Score=191.27 Aligned_cols=302 Identities=20% Similarity=0.214 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHH----HHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 799999999899999999532790479----74260--267999999999999999999997632037777762479999
Q 003629 88 PILESVASIGLLFFLFLVGLELDLSSI----RQNGK--SAFKIALAGITLPFLLGAGVSLFLQKAVDGESKVGYGQFIIF 161 (806)
Q Consensus 88 ~~~~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 161 (806)
....-+.+-.+.++||.+|+|+|.+.+ ++..| .+...++.++++|+++.. .+.... +.+..
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~~---------~~~~~ 124 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYAD---------PITRE 124 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCSS---------TTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCC---------HHHHH
T ss_conf 69999865749999999999821998431122245678999999998999999999----981487---------25655
Q ss_pred HHHHHHHCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999842328999999976162-488047999999999879999999999998413699988898637999999999999
Q 003629 162 IGVSLSITAFPVLARILADLKL-LTTQVGQTAMAAAAFNDIAAWILLALAVSLAGKASGTESHHPSSLISIWVLISGVAF 240 (806)
Q Consensus 162 l~~~~s~ts~~vv~~il~el~l-l~s~~g~l~l~~a~~~D~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (806)
...+.+.|+.+....++..++. .++..++.+++.+++||+.+|++++++.. ++.+.. +. ...+++
T Consensus 125 gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----------~~~~~~---~l-~~~~~~ 190 (388)
T 1zcd_A 125 GWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----------NDLSMA---SL-GVAAVA 190 (388)
T ss_dssp HTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----------CCCCHH---HH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHH---HH-HHHHHH
T ss_conf 5699999799999999999974276179999999999999999999987774----------875389---99-999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC----CHHHHHHHH
Q ss_conf 9999999889999999880789998743799999999999999999976147699999886358998----706899998
Q 003629 241 VAFMLIVVRPIMDWVARQCSSDNDLVDDAYICLTLVGVMVSGFLTDLIGIHAIFGAFVFGLTIPKGG----DFVVRLMKK 316 (806)
Q Consensus 241 ~~~~~~v~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~g~~~~lgafiaGl~~~~~~----~~~~~l~~~ 316 (806)
.+. . ++.+|. . .+....+..+ . +...+.++..|+|..+|+|++|+++|+.+ +..++++++
T Consensus 191 ~~~--------~-~~l~r~--~---v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~ 254 (388)
T 1zcd_A 191 IAV--------L-AVLNLC--G---ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHV 254 (388)
T ss_dssp HHH--------H-HHHHHT--T---CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHH
T ss_pred HHH--------H-HHHHHH--C---CHHHHHHHHH-H-HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 999--------9-999886--5---3458999999-9-999999998285299999999985467776678989999999
Q ss_pred HHHHHHHHHHHHH-HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHH
Q ss_conf 8897886556899-98750244501120113579999999999999999999999980----------999478999999
Q 003629 317 IQDFVSGLLLPLY-FASSGLKTDVAKIRGVEAWGLLVLVISTACAGKILGTFVMALLC----------MIPVRESLALGV 385 (806)
Q Consensus 317 l~~~~~~~~~plf-F~~~G~~i~~~~l~~~~~~~~~~~~~~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl 385 (806)
+++++..+++|+| |+..|.++|......... .....+.+..+++|+++++..++.. +++|+|...+|+
T Consensus 255 l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~ 333 (388)
T 1zcd_A 255 LHPWVAYLILPLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGI 333 (388)
T ss_dssp HHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHH
T ss_pred HHHHHHHHHHHHHHHHHCCEEECCCCHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 89989999999999984582423650664117-39999999999999999999999999966676999998999999999
Q ss_pred HHHCCHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 862011378999873013677--897789999999999999569999998
Q 003629 386 LMNTKGLVELIVLNIGREKKV--LNDEMFAILVVMALFTTFMTTPMVMAI 433 (806)
Q Consensus 386 ~l~~kG~~~l~~~~~~~~~~~--i~~~~~~~lv~~~iv~t~i~~pl~~~~ 433 (806)
+++.++++++.+++.+++.+. ..++.+..+++++++++++.+.++++.
T Consensus 334 L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~ 383 (388)
T 1zcd_A 334 LCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR 383 (388)
T ss_dssp HTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82420589999999862588155676599999999999999999999986
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=1.00 E-value=1 Score=182.41 Aligned_cols=261 Identities=14% Similarity=0.110 Sum_probs=179.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 489974299984568999986305899973389999854069884025665421079985-----311124788602799
Q 003629 463 KIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPL-----VNRFRRAGMSHDQIV 537 (806)
Q Consensus 463 riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~i~ 537 (806)
|||+|+|+++.+..+++.+..++ ++.+++++++|+++.+..............+.... .+.. .+..++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l 76 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLA--YKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERAL---ALRGEAVL 76 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHH--HHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHH---HHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHH--HHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_conf 28998478777899999999999--97099399999950577665543470677899887778888999---99999999
Q ss_pred HHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99999741573499974765169965898999987238659996265444-47997211245624089999986109984
Q 003629 538 ASLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQR-RGEGEEEIDSVSHGWREVNRTVLLNAPCS 616 (806)
Q Consensus 538 ~~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~-~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~ 616 (806)
+.+.+..+..++.++..+..+ ++.+.|++. +.++|+||||+|+++ ++.+. .+|++.++|+++++||
T Consensus 77 ~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~--------~~Gs~~~~v~~~a~~P 143 (268)
T 3ab8_A 77 ERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFG--------GLGSTADRVLRASPVP 143 (268)
T ss_dssp HHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCC--------SCCHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCEEEEEECC---CHHHHHHHH--CCCCCEEEEECCCCCCCCCCC--------CCCHHHHHHHHHCCCC
T ss_conf 999999985799718987069---878999961--469988999266787653334--------5466699999847998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 59998278998877444678899884499981589218999999999741898499999966268877557865555566
Q 003629 617 VAVLVDRGFGCGAHLTVAEPAATVPKRVCIVFLGGPDDRRALDLGGRMAENSGVKVTLVRFVHQASGAATGGIAERATSD 696 (806)
Q Consensus 617 V~ilvdrg~~~~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAl~~a~~la~~~~~~ltlv~v~~~~~~~~~~~~~~~~~~~ 696 (806)
|+++ |... . ...+|+++++|+++++.|+++|.++++..+++++++++.++.
T Consensus 144 Vlvv--~~~~-----------~-~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~--------------- 194 (268)
T 3ab8_A 144 VLLA--PGEP-----------V-ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP--------------- 194 (268)
T ss_dssp EEEE--CSSC-----------C-CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH---------------
T ss_pred EEEE--CCCC-----------C-CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCH---------------
T ss_conf 8997--8887-----------8-777899997898789999999999652079879999972847---------------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 78732001079999998751899579999992793789999401489968998569999643333344589886444111
Q 003629 697 ISTENGISLDEAAVDDFMRKCDGSVECEEKVMGTVKDEVLKIGQSRDYELVVAGKGRFPSTALAELADHQPENVGLGPIG 776 (806)
Q Consensus 697 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~e~~v~~~~~~~~~l~~~~~~DLiivG~~~~~~~~~~Gl~~~w~e~~~lG~ig 776 (806)
+...+..++..+.+.+ ..-.+.+. ...++..+ .+++..+++||+|||+ + +.+ | .+|++.
T Consensus 195 ---~~~~~~l~~~~~~l~~-~~~~~~~~-~~~g~~~~--~i~~~a~~~dliV~G~-~--------~~~-~----~~Gs~~ 253 (268)
T 3ab8_A 195 ---ARAEAWALEAEAYLRD-HGVEASAL-VLGGDAAD--HLLRLQGPGDLLALGA-P--------VRR-L----VFGSTA 253 (268)
T ss_dssp ---HHHHHHHHHHHHHHHH-TTCCEEEE-EECSCHHH--HHHHHCCTTEEEEEEC-C--------CSC-C----SSCCHH
T ss_pred ---HHHHHHHHHHHHHHHH-CCCCEEEE-EECCCHHH--HHHHHHHHCCEEEECC-C--------CCC-C----EECCHH
T ss_conf ---8899999999999987-59946999-91798599--9999997699999998-6--------132-6----866279
Q ss_pred HHHHCCCCCCCCCEEEEE
Q ss_conf 212138999830089895
Q 003629 777 NILASSDHGILASVLVIQ 794 (806)
Q Consensus 777 d~las~~~~~~~svlvvq 794 (806)
+.+..+ +++|||||+
T Consensus 254 ~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 254 ERVIRN---AQGPVLTAR 268 (268)
T ss_dssp HHHHHH---CSSCEEEEC
T ss_pred HHHHHC---CCCCEEEEC
T ss_conf 999855---999889939
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=115.30 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 72489974299984568999986305899973389999854069884025--6654210799853111247886027999
Q 003629 461 EFKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSIL--TVQKTRKNGLPLVNRFRRAGMSHDQIVA 538 (806)
Q Consensus 461 e~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~i~~ 538 (806)
-.|||+|+|+++.+..++..+..++ ++.+++++++|+++.+....... ...+..+. .+ +..++.++
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~l~ 72 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIA--QRHQANLTALYVVDDSAYHTPALDPVLSELLDA-----EA-----AHAKDAMR 72 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHH--HHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHH-----HH-----HHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHH-----HH-----HHHHHHHH
T ss_conf 6669997479988999999999999--861998999999627544554444240899999-----99-----99999999
Q ss_pred HHHHHHHCCCE-EEEEEEEECCCCCHHHHHHH-HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99997415734-99974765169965898999-98723865999626544447997211245624089999986109984
Q 003629 539 SLEAYNQLRRV-TVRHSTAISALSTMHEDIFH-VAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCS 616 (806)
Q Consensus 539 ~~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~-~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~ 616 (806)
.+.+.....++ .++..+..+ ++.+.|++ .|++.++||||||.|+++++.+. .+|++.++|++++|||
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~--------~~Gs~~~~vl~~~~~p 141 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRV--------AVGSTTSYVVDHAPCN 141 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTC--------SSCHHHHHHHHHCSSE
T ss_pred HHHHHHHHCCCCCEEEEEECC---CHHHHHHHHHHHHCCCCEEEECCCCCCCCCEE--------EECCHHHHHHCCCCCC
T ss_conf 999999865975259999538---84899999988653999999889999876127--------8734588996149999
Q ss_pred EEEE
Q ss_conf 5999
Q 003629 617 VAVL 620 (806)
Q Consensus 617 V~il 620 (806)
|+++
T Consensus 142 VlvV 145 (146)
T 3s3t_A 142 VIVI 145 (146)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 8984
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=1.00 E-value=1 Score=114.03 Aligned_cols=140 Identities=13% Similarity=0.092 Sum_probs=98.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHH--HHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 2489974299984568999986305899973389999854069884025--66542107998531112478860279999
Q 003629 462 FKIQACVHGPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSIL--TVQKTRKNGLPLVNRFRRAGMSHDQIVAS 539 (806)
Q Consensus 462 ~riLv~i~~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~i~~~ 539 (806)
.|||+|+|+++.+..++..+..++ ++.+++++++|+++.+....... ......++...... +..++.++.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 74 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQ--QLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALK------DYATEIAVQ 74 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHH--HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHH------HHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH------HHHHHHHHH
T ss_conf 429998589777899999999999--754998999999457554431001367035666799999------999999999
Q ss_pred HHHHHHCCCEEE---EEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 999741573499---97476516996589899998723865999626544447997211245624089999986109984
Q 003629 540 LEAYNQLRRVTV---RHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCS 616 (806)
Q Consensus 540 ~~~~~~~~~v~v---~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~ 616 (806)
+.+..+..++.+ +..+..+ ++.+.|++.|++.++|+||||.|+++++.+. .+|++.++|++++|||
T Consensus 75 ~~~~~~~~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~--------~~Gs~~~~vl~~~~~p 143 (147)
T 3hgm_A 75 AKTRATELGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSL--------LLGSVAQRVAGSAHCP 143 (147)
T ss_dssp HHHHHHHTTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCC--------CCCHHHHHHHHHCSSC
T ss_pred HHHHHHHCCCCCCCEEEEEECC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCE--------EECCHHHHHHHHCCCC
T ss_conf 9999986699865317899548---8799999999980999999937987653022--------5533899999628998
Q ss_pred EEEE
Q ss_conf 5999
Q 003629 617 VAVL 620 (806)
Q Consensus 617 V~il 620 (806)
|+++
T Consensus 144 VlvV 147 (147)
T 3hgm_A 144 VLVV 147 (147)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 8979
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=1.00 E-value=1 Score=112.39 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=99.3
Q ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98724899742--9998456899998630589997338999985406988402566542107998531112478860279
Q 003629 459 KDEFKIQACVH--GPENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQI 536 (806)
Q Consensus 459 ~~e~riLv~i~--~~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i 536 (806)
..-.|||+|+| +++.+..+++.+..++ ++.+++++++|+++.+..........+..+. .+ +..++.
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la--~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~ 80 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLA--HDYDVPLGICSVLESEDINIFDSLTPSKIQA-----KR-----KHVEDV 80 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHH--HHHTCCEEEEEEECCCCTTCCCSSHHHHHHH-----HH-----HHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH--HHCCCEEEEEEEEECCCCCCCCCCCHHHHHH-----HH-----HHHHHH
T ss_conf 56754999978999989999999999999--7659989999997378756544479789999-----99-----999999
Q ss_pred HHHHHHHHHCCCE-EEEEEEEECCCCCHHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9999997415734-999747651699658989999-87238659996265444479972112456240899999861099
Q 003629 537 VASLEAYNQLRRV-TVRHSTAISALSTMHEDIFHV-AEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAP 614 (806)
Q Consensus 537 ~~~~~~~~~~~~v-~v~~~~~vs~~~~~~~~I~~~-A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~Ap 614 (806)
++.+.+..+..++ .++..+..+ +++.+.|++. |++.++||||||.|++++++ . .+|++.++|++++|
T Consensus 81 l~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~--------~~Gs~~~~vl~~a~ 149 (156)
T 3fg9_A 81 VAEYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-K--------IAGAIGPRLARKAP 149 (156)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-S--------SCSCHHHHHHHHCS
T ss_pred HHHHHHHHHHCCCCCEEEEEEEC--CCHHHHHHHHHHHHCCCCEEEECCCCCCCCC-E--------EECCHHHHHHHHCC
T ss_conf 99999999876997468999848--9878999998887659899998888998600-0--------44234899997099
Q ss_pred CCEEEE
Q ss_conf 845999
Q 003629 615 CSVAVL 620 (806)
Q Consensus 615 C~V~il 620 (806)
|||+++
T Consensus 150 ~PVlvV 155 (156)
T 3fg9_A 150 ISVIVV 155 (156)
T ss_dssp SEEEEE
T ss_pred CCEEEE
T ss_conf 998995
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=1.00 E-value=1 Score=111.31 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=98.2
Q ss_pred CCCEEEEEECC-CCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 87248997429-99845689999863058999733899998540698840256654210799853111247886027999
Q 003629 460 DEFKIQACVHG-PENVPALINLTELIRTTEGSTLKLYVMRLVELTDRSSSILTVQKTRKNGLPLVNRFRRAGMSHDQIVA 538 (806)
Q Consensus 460 ~e~riLv~i~~-~~~~~~~l~la~~la~~~~~~~~v~~Lhliel~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~ 538 (806)
.-.+||+|+|+ ++.+..++..+..++ +..+++++++|+++.+...... .. +..++.++
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la--~~~~a~l~llhV~~~~~~~~~~-----~~--------------~~~~~~l~ 81 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEA--RLRGVPVYVVHSLPGGGRTKDE-----DI--------------IEAKETLS 81 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHH--HHHTCCEEEEEEECCSTTSCHH-----HH--------------HHHHHHHH
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHH--HHCCCEEEEEEEECCCCCCCHH-----HH--------------HHHHHHHH
T ss_conf 668299997899977999999999999--8659989999997688765489-----99--------------99999999
Q ss_pred HHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 99997415734999747651699658989999872386599962654444799721124562408999998610998459
Q 003629 539 SLEAYNQLRRVTVRHSTAISALSTMHEDIFHVAEEKRVAMIVLPFHKQRRGEGEEEIDSVSHGWREVNRTVLLNAPCSVA 618 (806)
Q Consensus 539 ~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIilg~h~~~~~~~~~~~~~~~~~~~~v~~~Vl~~ApC~V~ 618 (806)
.+.+..+..++.++..+.+ ..+++.+.|++.|++.++||||||.|+++++.+. .+|++.++|++++||||+
T Consensus 82 ~~~~~~~~~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--------~lGSv~~~vl~~a~~PVL 152 (155)
T 3dlo_A 82 WAVSIIRKEGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL--------IFGSVARDVILKANKPVI 152 (155)
T ss_dssp HHHHHHHHTTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE--------ECCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHCCCCCEEEEEE-CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCE--------EECCHHHHHHHHCCCCEE
T ss_conf 9999998539972599996-2799799999999871989999878998888777--------856189999983999889
Q ss_pred EE
Q ss_conf 99
Q 003629 619 VL 620 (806)
Q Consensus 619 il 620 (806)
++
T Consensus 153 vV 154 (155)
T 3dlo_A 153 CI 154 (155)
T ss_dssp EE
T ss_pred EE
T ss_conf 95
Done!