BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003630
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 486 bits (1252), Expect = e-137, Method: Compositional matrix adjust.
Identities = 305/838 (36%), Positives = 433/838 (51%), Gaps = 73/838 (8%)
Query: 8 DIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKE 67
DI+HY++ I P +++NR+I+ ++ ++ G R P +DG K++YTA PLP +
Sbjct: 55 DIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDK 114
Query: 68 FIIELXXXXXXXXXXXXXXXXXQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGV 127
+E+ F+V I+ S L L L R P++ IQ L V
Sbjct: 115 VELEVTLPGEGKDRI--------FKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDV 166
Query: 128 ILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSF 187
++ S ++T VGRSFF G LG G E W G+ QS+R + + LNIDVSA +F
Sbjct: 167 VMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAF 226
Query: 188 YEPILVTEFVQNYCRNLS--------RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRI 238
Y+ V EFV C L +PL+D R+K KE+KG+KV +TH + +R+
Sbjct: 227 YKAQPVIEFV---CEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRV 283
Query: 239 TGISSQPMSQLAF----TDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPM 294
++ +P S F G +V QYF++R+ + L++ LP L G E + YLP+
Sbjct: 284 CNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPL 343
Query: 295 ELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQ 354
E+ IVAGQR ++L + Q + +++AT + +R++ I + R+ ++N D V +EFGI
Sbjct: 344 EVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYV-REFGIM 402
Query: 355 VADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFS-T 413
V D++T V R+L P + Y + A P G W+M NK+ G ++VW F+
Sbjct: 403 VKDEMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQ 461
Query: 414 RLNRDVPFQ-FCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTXXXXXX 472
R +V + F + L + GM QP + + +E + N
Sbjct: 462 RQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVV 521
Query: 473 XXXXXXXPDVS-----GSYV-----------------PRFLVKID-RFASLVGGRNTVLV 509
P + G V P+ L + + +GG N +L+
Sbjct: 522 VILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILL 581
Query: 510 DAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPH 569
Q R P V +P I GADVTHP G PSIAAVV SMD +Y V Q
Sbjct: 582 P--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 637
Query: 570 EEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLH 629
+EIIQDL M+RELLI F +ST FKP RIIFYRDGV E QF QVL H
Sbjct: 638 QEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH 684
Query: 630 EMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEI 689
E+ AIR+AC LE+ Y P +TF+VVQKR TRLF + N + +SGNI GT VDT+I
Sbjct: 685 ELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVDTKI 742
Query: 690 CHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIV 749
HPTEFDFYL SHAGIQGTSRP+ YHVL+D+NRF++D LQ+LT LC+TY RCTRSVSI
Sbjct: 743 THPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP 802
Query: 750 PPXXXXXXXXXXXXXXI---EDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMF 804
P + E +++ G T G + + + + V +D ++ + F
Sbjct: 803 APAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 860
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 303/838 (36%), Positives = 431/838 (51%), Gaps = 73/838 (8%)
Query: 8 DIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKE 67
DI+HY++ I P +++NR+I+ ++ ++ G R P +DG K++YTA PLP +
Sbjct: 53 DIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDK 112
Query: 68 FIIELXXXXXXXXXXXXXXXXXQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGV 127
+E+ F+V I+ S L L L R P++ IQ L V
Sbjct: 113 VELEVTLPGEGKDRI--------FKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDV 164
Query: 128 ILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSF 187
++ S ++T VGRSFF G LG G E W G+ QS+R + + LNIDVSA +F
Sbjct: 165 VMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAF 224
Query: 188 YEPILVTEFVQNYCRNLS--------RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRI 238
Y+ V EFV C L +PL+D R+K KE+KG+KV +TH + +R+
Sbjct: 225 YKAQPVIEFV---CEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRV 281
Query: 239 TGISSQPMSQLAF----TDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPM 294
++ +P S F G +V QYF++R+ + L++ LP L G E + YLP+
Sbjct: 282 CNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPL 341
Query: 295 ELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQ 354
E+ IVAGQR ++L + Q + +++AT + +R++ I + R+ +N D V +EFGI
Sbjct: 342 EVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSADFNTDPYV-REFGIM 400
Query: 355 VADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFS-T 413
V D++T V R+L P + Y + A P G W+M NK+ G ++VW F+
Sbjct: 401 VKDEMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQ 459
Query: 414 RLNRDVPFQ-FCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTXXXXXX 472
R +V + F + L + GM QP + + +E + N
Sbjct: 460 RQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVV 519
Query: 473 XXXXXXXPDVS-----GSYVPRFLVKIDRFASL------------------VGGRNTVLV 509
P + G V + + ++ +GG N +L+
Sbjct: 520 VILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILL 579
Query: 510 DAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPH 569
Q R P V +P I GADVTHP G PSIAAVV SMD +Y V Q
Sbjct: 580 P--QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHR 635
Query: 570 EEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLH 629
+EIIQDL M+RELLI F +ST FKP RIIFYRDGV E QF QVL H
Sbjct: 636 QEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHH 682
Query: 630 EMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEI 689
E+ AIR+AC LE+ Y P +TF+VVQKR TRLF + N + +SGNI GT VDT+I
Sbjct: 683 ELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKN--ERVGKSGNIPAGTTVDTKI 740
Query: 690 CHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIV 749
HPTEFDFYL SHAGIQGTSRP+ YHVL+D+NRF++D LQ+LT LC+TY RCTRSVSI
Sbjct: 741 THPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIP 800
Query: 750 PPXXXXXXXXXXXXXXI---EDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMF 804
P + E +++ G T G + + + + V +D ++ + F
Sbjct: 801 APAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYF 858
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 160/328 (48%), Gaps = 43/328 (13%)
Query: 500 LVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTH-PQPWGGTSPSIAAVVASMDWPEVAK 558
L+G +++ ++ + I ++ P ++ G+DVTH P+ SIA++V S D + +
Sbjct: 739 LLGSNHSLSIENNKLLIDKESNLPILVLGSDVTHYPE---KDQNSIASLVGSYD-DKFTQ 794
Query: 559 YRGLVSAQ-APHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFK-PHRIIFYRD 616
+ G Q P EEII ++ G ++ L +++ N K P +I+++RD
Sbjct: 795 FPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKIMYFRD 841
Query: 617 GVGERQFSQVLLHEMNAIRQAC----ASLEEG--YAPPVTFVVVQKRCRTRLFPAEHNRC 670
GV QFSQV+ E+ +I+++ L G Y PPVT + KR + R P + N
Sbjct: 842 GVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAK 901
Query: 671 DLTDRS------GNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFT 724
+ GN++PGTVVD I FDF++ SH ++GT P Y LYDEN+ T
Sbjct: 902 NEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQST 961
Query: 725 ADGLQVLTNNLCYTYARCTRSVSIVPPXXXXXXXXXXXXXXIEDETSAGGSTDGNRSTAE 784
+D LQ + NNLCY + R T SV + P + AG + ++ E
Sbjct: 962 SDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFK----AGFELNMAQAPKE 1017
Query: 785 RNLAIRP-------LPVIKDNVKDVMFY 805
+ +P LP + DN+K VM+Y
Sbjct: 1018 KGSKDQPTVSKNVLLPQVNDNIKSVMYY 1045
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 14/145 (9%)
Query: 258 SMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTAL 317
+++ I YF+ +Y+I L++ + + G + +P E IV GQ+ ++ + +
Sbjct: 421 NINTIDYFKRKYDITLKYPDMKLVNLGGKND--VVPPECLTIVPGQKLKGQIFDTKTYID 478
Query: 318 LQATCQRPREREDYIRMMARANAYNEDTLVNKEFGI---QVADDLTSVDARILPAPMLKY 374
A RP E+ D I ++ T KE A V +RIL AP++++
Sbjct: 479 FSAI--RPTEKFDLISRLSMPAIKRGLTDSEKEESSAPHNSAYQFMRVPSRILDAPVVQF 536
Query: 375 HETGQE-------ASVNPGFGQWNM 392
E+ E G WNM
Sbjct: 537 KESTFEYKDKSYGTKHEESKGNWNM 561
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 512 VQKRIPLVTDRPTIIFGADVTHPQPWG-----GTSPSIAAVVASMD-----WPEVAKYRG 561
++ IPL+ T++ G DVTHP ++PSI +V+++D WP A
Sbjct: 145 IKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWP--AMVWN 202
Query: 562 LVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGER 621
Q E D +K+ EL + + P I+ +RDGV E
Sbjct: 203 NPHGQESMTEQFTDKFKTRL-------------ELWRSNPANNRSLPENILIFRDGVSEG 249
Query: 622 QFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNIL 680
QF V+ E+ +R AC + G P +T +V KR +TR FP + +S
Sbjct: 250 QFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHIHFKSKSPK-- 307
Query: 681 PGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDE------NRFTADGLQVLTNN 734
GTVVD + + +DF+L +HA +QGT+R Y VL DE AD L+ LT++
Sbjct: 308 EGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHD 367
Query: 735 LCYTYARCTRSVSIVPP 751
+CY + R T++VSI PP
Sbjct: 368 MCYLFGRATKAVSICPP 384
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 394 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQ 453
+KKM NG +V WTCV+FSTR++R +P +FC+ L+ MC SKGM F PQP IP S P
Sbjct: 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 454 IEKALVDVHNRTTXXXXXXXXXXXXXPDVSGSY 486
IE+AL+D+H R PDV+GSY
Sbjct: 62 IEEALLDIHKRAP----GLQLLIVILPDVTGSY 90
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex Of
Deoxynucleotide Overhang
Length = 149
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 206 RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRITGISSQPMSQLAF----TDGSATSMS 260
+PL+D R++ KE+KG+KV +TH + +R+ ++ +P S F G +
Sbjct: 26 KPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECT 85
Query: 261 VIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQA 320
V QYF+++YN+ L++ LP L G E + YLP+E+ IVAGQR ++L + Q + +++A
Sbjct: 86 VAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKA 145
Query: 321 T 321
T
Sbjct: 146 T 146
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In
Complex With A 9-Mer Sirna-Like Duplex
Length = 149
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 206 RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRITGISSQPMSQLAF----TDGSATSMS 260
+PL+D R++ KE+KG+KV +TH + +R+ ++ +P S F G +
Sbjct: 26 KPLTDSQRVRFTKEIKGLKVEVTHCGQXKRKYRVCNVTRRPASHQTFPLQLESGQTVECT 85
Query: 261 VIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQA 320
V QYF+++YN+ L++ LP L G E + YLP+E+ IVAGQR ++L + Q + ++A
Sbjct: 86 VAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTXIKA 145
Query: 321 T 321
T
Sbjct: 146 T 146
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz
Domain
Length = 169
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 206 RPLSDQVRLKVKKELKGIKVVLTHL-ETSNSHRITGISSQPMSQLAF----TDGSATSMS 260
+PL+D R+K KE+KG+K+ +TH + +R+ ++ +P +F +G +
Sbjct: 28 KPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECT 87
Query: 261 VIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQA 320
V +YF ++Y + L++ LP L G E + YLP+E+ IVAGQR ++L + Q + +++A
Sbjct: 88 VAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKA 147
Query: 321 TCQRPREREDYIRMMARANAYN 342
T + +RE I + + +N
Sbjct: 148 TARSAPDREREINNLVKRADFN 169
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 393 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPN 452
+NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP+PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 453 QIEKAL 458
Q+EK L
Sbjct: 61 QVEKVL 66
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 393 INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPN 452
+NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP+PV+P S+ P
Sbjct: 1 MNKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPE 60
Query: 453 QIEKAL 458
Q+EK L
Sbjct: 61 QVEKVL 66
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 394 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQ 453
NKKM NGG V W C+NFS ++ ++ FCQ L MC GM FNP+PV+P S+ P Q
Sbjct: 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQ 61
Query: 454 IEKAL 458
+EK L
Sbjct: 62 VEKVL 66
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 394 NKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQ 453
NKK NGG V W C+NFS ++ ++ FCQ L C G FNP+PV+P S+ P Q
Sbjct: 2 NKKXINGGTVNNWICINFSRQVQDNLARTFCQELAQXCYVSGXAFNPEPVLPPVSARPEQ 61
Query: 454 IEKAL 458
+EK L
Sbjct: 62 VEKVL 66
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 71/251 (28%)
Query: 512 VQKRIPLVTDRPTIIFGADVTHPQPWG-----GTSPSIAAVVASMD-----WPEVAKYRG 561
++ IPL+ T++ G DVTHP ++PSI +V+++D WP A
Sbjct: 145 IKTPIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQHLGQWP--AMVWN 202
Query: 562 LVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGER 621
Q E D +K+ EL + + P I+ +RDGV E
Sbjct: 203 NPHGQESMTEQFTDKFKT-------------RLELWRSNPANNRSLPENILIFRDGVSEG 249
Query: 622 QFSQVLLHEMNAIRQACASL-EEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNIL 680
QF V+ E+ +R AC + G P +T +V K + +
Sbjct: 250 QFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKGSGSAHY----------------- 292
Query: 681 PGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYA 740
TV+ EI D AD L+ LT+++CY +
Sbjct: 293 --TVLVDEIFRA--------------------------DYGNKAADTLEQLTHDMCYLFG 324
Query: 741 RCTRSVSIVPP 751
R T++VSI PP
Sbjct: 325 RATKAVSICPP 335
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 180 IDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKE-----LKGIKVVLTHLETSN 234
+D+S +SF + + E+++ + L +++ L + L+GI VV T ++
Sbjct: 374 VDISHKSFPISMPMIEYLERFS--LKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQ 431
Query: 235 S----HRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPI 290
S +R+ G+S P S F + +++ YF R N L+F L L GS + I
Sbjct: 432 SAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYFHSR-NYPLKFPQLHCLNVGSSIKSI 489
Query: 291 YLPMELSRIVAGQRYTQR 308
LP+EL I GQ ++
Sbjct: 490 LLPIELCSIEEGQALNRK 507
>pdb|1VYN|A Chain A, Structure And Nucleic Acid Binding Of The Drosophila
Argonaute2 Paz Domain
Length = 143
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 210 DQVRLKVKKELKGIKVVLTHLETSNS----HRITGISSQPMSQLAFTDGSATSMSVIQYF 265
D R ++ L+GI VV T ++ S +R+ G+S P S F + +++ YF
Sbjct: 27 DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYF 85
Query: 266 RERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQ 319
R N L+F L L GS + I LP+EL I GQ ++ QV +++
Sbjct: 86 HSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIK 138
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex
With 3'-End 2'-O-Methylated Rna
Length = 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 210 DQVRLKVKKELKGIKVVLTHLETSNS----HRITGISSQPMSQLAFTDGSATSMSVIQYF 265
D R ++ L+GI VV T ++ S +R+ G+S P S F + +++ YF
Sbjct: 25 DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYF 83
Query: 266 RERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQ 303
R N L+F L L GS + I LP+EL I GQ
Sbjct: 84 HSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQ 120
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
pdb|1T2S|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids
By The Drosophila Argonaute 2 Paz Domain
Length = 123
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 210 DQVRLKVKKELKGIKVVLTHLETSNS----HRITGISSQPMSQLAFTDGSATSMSVIQYF 265
D R ++ L+GI VV T ++ S +R+ G+S P S F + +++ YF
Sbjct: 27 DYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVTIASYF 85
Query: 266 RERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQ 303
R N L+F L L GS + I LP+EL I GQ
Sbjct: 86 HSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQ 122
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain
pdb|2L5D|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain With
Ssrna (5'- Pugaca)
Length = 134
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 191 ILVTEFVQNYCRNLSRPLSD-QVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQL 249
+L +E V ++ N + + + +V KEL G+ VVLT + ++R+ I +
Sbjct: 8 VLRSETVLDFMFNFYHQTEEHKFQEQVSKELIGL-VVLTKY-NNKTYRVDDIDWDQNPKS 65
Query: 250 AFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSEAR 288
F + +S ++Y+R++YN + P L++ + R
Sbjct: 66 TFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRR 104
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Oh At Its 3'-End
Length = 124
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 215 KVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQ 274
+V KEL G+ VVLT + ++R+ I + F + +S ++Y+R++YN +
Sbjct: 23 QVSKELIGL-VVLTKY-NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 80
Query: 275 FTSLPALLAGSEAR 288
P L++ + R
Sbjct: 81 DLKQPVLVSQPKRR 94
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 300 VAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDL 359
V G + Q+LN++ + +Q+ Q P R+D+ ++ RA+ D L+ K + V L
Sbjct: 260 VPGTEFVQKLNDKAAKSYIQSLPQTP--RKDFTQLFPRASPQAAD-LLEKMLELDVDKRL 316
Query: 360 TSVDARILP 368
T+ A P
Sbjct: 317 TAAQALTHP 325
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 300 VAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDL 359
V G + Q+LN++ + +Q+ Q P R+D+ ++ RA+ D L+ K + V L
Sbjct: 242 VPGTEFVQKLNDKAAKSYIQSLPQTP--RKDFTQLFPRASPQAAD-LLEKMLELDVDKRL 298
Query: 360 TSVDARILP 368
T+ A P
Sbjct: 299 TAAQALTHP 307
>pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To
Methylated Single Stranded Rna
Length = 150
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 215 KVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQ 274
+V KEL G+ +VLT + ++R+ I + F + +S ++Y+R++YN +
Sbjct: 24 QVSKELIGL-IVLTKY-NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 81
Query: 275 FTSLPALLAGSEAR 288
P L++ + R
Sbjct: 82 DLKQPVLVSQPKRR 95
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 215 KVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQ 274
+V KEL G+ VVLT + ++R+ I + F + +S ++Y+R++YN +
Sbjct: 23 QVSKELIGL-VVLTKY-NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 80
Query: 275 FTSLPALLAGSEAR 288
P L++ + R
Sbjct: 81 DLKQPVLVSQPKRR 94
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain
(Residues 277-399) In Complex With 14-Mer Rna (12-Bp +
2-Nt Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 215 KVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQ 274
+V KEL G+ VVLT + ++R+ I + F + +S ++Y+R++YN +
Sbjct: 23 QVSKELIGL-VVLTKY-NNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT 80
Query: 275 FTSLPALLAGSEAR 288
P L++ + R
Sbjct: 81 DLKQPXLVSQPKRR 94
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP+++Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVEYREEELKSLRGNGTGE 176
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP+++Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVEYREEELKSLRGNGTGE 176
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP+++Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVEYREEELKSLRGNGTGE 176
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP+++Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVEYREEELKSLRGNGTGE 176
>pdb|3CBU|A Chain A, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
pdb|3CBU|B Chain B, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
Length = 214
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 486 YVPRFLVKIDRFASLVGGRNTVLVD-AVQKRIPLVTDRPTIIFGADVTHPQP 536
YVP F K+ +F+ V G L D A +PLV+ II+G D+ P
Sbjct: 131 YVPAF-AKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLP 181
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP+++Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVEYREEELKSLRGNGTGE 176
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 276 TSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMM 335
TSLP L AG A I+ + S + G Y + N QV L++ + IR +
Sbjct: 69 TSLPTLGAGESAFNIHFEWDGSMGIPGAFYIK--NYMQVEFFLKSLTLEAISNQGTIRFV 126
Query: 336 ARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQ 389
+ YN T + K I A+ T V + PAP++ Y E ++ G G+
Sbjct: 127 CNSWVYN--TKLYKSVRIFFANH-TYVPSET-PAPLVSYREEELKSLRGNGTGE 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,843,039
Number of Sequences: 62578
Number of extensions: 843244
Number of successful extensions: 1827
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1779
Number of HSP's gapped (non-prelim): 46
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)