Query 003630
Match_columns 806
No_of_seqs 211 out of 1092
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:03:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 4E-158 8E-163 1414.4 76.3 775 5-806 60-900 (900)
2 KOG1041 Translation initiation 100.0 4E-141 8E-146 1255.6 66.4 766 4-806 71-876 (876)
3 KOG1042 Germ-line stem cell di 100.0 4E-123 8E-128 996.0 43.8 674 2-768 105-832 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 9.3E-95 2E-99 810.9 37.2 392 345-766 1-426 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 5.1E-89 1.1E-93 772.4 41.0 411 313-763 2-447 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 3.5E-81 7.6E-86 695.5 37.1 357 359-764 2-393 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 3.8E-65 8.3E-70 551.1 21.5 247 497-767 54-302 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 3.3E-39 7.2E-44 361.3 23.8 259 451-763 93-401 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 1.7E-24 3.7E-29 204.8 10.5 133 191-324 1-135 (135)
10 cd02825 PAZ PAZ domain, named 99.9 4E-21 8.7E-26 175.8 11.5 110 190-300 1-115 (115)
11 cd02846 PAZ_argonaute_like PAZ 99.8 3.9E-20 8.4E-25 169.7 12.8 111 190-300 1-114 (114)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 2.3E-19 4.9E-24 163.4 10.3 105 191-300 2-114 (117)
13 PF08699 DUF1785: Domain of un 99.6 2.2E-15 4.7E-20 115.6 4.6 52 138-190 1-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.5 3.8E-14 8.3E-19 131.9 6.6 83 216-301 27-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.7 2.6E-08 5.6E-13 89.4 6.0 67 217-285 38-106 (122)
16 COG1431 Argonaute homolog, imp 97.8 9E-05 1.9E-09 82.1 10.4 128 607-765 537-669 (685)
17 PF13032 DUF3893: Domain of un 90.9 0.47 1E-05 44.7 5.6 57 708-768 66-122 (138)
18 PF08459 UvrC_HhH_N: UvrC Heli 82.0 7.6 0.00017 37.4 8.4 105 521-661 9-120 (155)
19 PRK11617 endonuclease V; Provi 80.3 59 0.0013 33.4 14.6 38 722-766 180-217 (224)
20 TIGR00194 uvrC excinuclease AB 67.2 36 0.00078 40.2 10.6 109 523-666 381-498 (574)
21 PRK14672 uvrC excinuclease ABC 57.8 95 0.0021 37.2 11.7 110 521-665 452-565 (691)
22 cd06559 Endonuclease_V Endonuc 54.8 72 0.0016 32.4 9.0 32 722-760 176-207 (208)
23 PRK14667 uvrC excinuclease ABC 45.2 1.7E+02 0.0036 34.6 11.2 106 522-664 360-470 (567)
24 PRK00558 uvrC excinuclease ABC 43.3 2.2E+02 0.0048 34.0 12.0 98 522-656 382-485 (598)
25 PRK14666 uvrC excinuclease ABC 38.0 2.5E+02 0.0055 33.8 11.2 100 522-656 471-571 (694)
26 PRK12306 uvrC excinuclease ABC 37.5 2.8E+02 0.0061 32.4 11.4 106 522-664 365-475 (519)
27 PRK14669 uvrC excinuclease ABC 37.0 3E+02 0.0065 33.0 11.7 107 522-664 395-506 (624)
28 PRK14670 uvrC excinuclease ABC 36.8 3.5E+02 0.0076 32.0 12.1 107 522-660 357-468 (574)
29 PRK00766 hypothetical protein; 31.1 81 0.0018 31.6 4.9 35 721-762 152-186 (194)
30 PRK14671 uvrC excinuclease ABC 30.6 3.6E+02 0.0078 32.3 11.0 106 522-665 414-525 (621)
31 PF02772 S-AdoMet_synt_M: S-ad 27.2 41 0.00089 30.9 1.9 31 737-767 12-42 (120)
32 PF09373 PMBR: Pseudomurein-bi 26.3 70 0.0015 22.0 2.5 22 590-612 11-32 (33)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.8e-158 Score=1414.37 Aligned_cols=775 Identities=36% Similarity=0.595 Sum_probs=653.7
Q ss_pred CCCceEEEEEEEcc----CCCChHHHHHHHHHHHHHhhhccCCCCceeeeCCceeeecCCCCCCCceEEEEcCCCCCCC-
Q 003630 5 AEKDIHHYDVSITP----WVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRP- 79 (806)
Q Consensus 5 ~~~~~y~Y~V~i~p----~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~l~~~~~~~- 79 (806)
|+..+|||||+|+| +++++++++.|++++++++... +.+..+||||+++|||+++||.+..++.|++.++..+.
T Consensus 60 ~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~ 138 (900)
T PLN03202 60 PDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRN 138 (900)
T ss_pred CCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCceeecCccceEECccCCCCCceEEEEecccccccc
Confidence 57789999999996 4455778889999888765433 55557899999999999999987778888876431100
Q ss_pred --------CCCC---------CCCCCcEEEEEEEeccccchHHHHHHhccCCCCCChhHHHHHHHHHcccccCC-cceec
Q 003630 80 --------SSST---------RPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEK-HTVVG 141 (806)
Q Consensus 80 --------~~~~---------~~~~~~~~~V~I~~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~g 141 (806)
+... ...+.+.|+|+|++++++++.+|.+||.|.....+.++||+||+|||+.++.. +..+|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~g 218 (900)
T PLN03202 139 NGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVR 218 (900)
T ss_pred cccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceec
Confidence 0000 01246889999999999999999999999988888899999999999987655 88999
Q ss_pred ccccCCCCCCccccCCcEEEEEeEEEEEeeecceeEEeeeccccccccCccHHHHHHHHhhhcCCCCCHHHHHHHHHHhc
Q 003630 142 RSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELK 221 (806)
Q Consensus 142 r~ff~~~~~~~~~l~~Gle~~~G~~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~Lk 221 (806)
|+||.+......++++|+|+|+||++|||+++++|+||+|+++++||++++|+|+|.++.+. +.....++.++.++|+
T Consensus 219 r~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~lk 296 (900)
T PLN03202 219 QSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNV--RDPFQIDWSKAKRMLK 296 (900)
T ss_pred cccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCc--CCccchhHHHHHHHhc
Confidence 99998654445678999999999999999999999999999999999999999999887521 1111234667999999
Q ss_pred CcEEEEeecCCcceEEEecccCCCCCCceEecC--C-------CceeeHHHHHHHHcCCcccCC-CCCeeecCCCCCCce
Q 003630 222 GIKVVLTHLETSNSHRITGISSQPMSQLAFTDG--S-------ATSMSVIQYFRERYNIALQFT-SLPALLAGSEARPIY 291 (806)
Q Consensus 222 Gl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~--~-------g~~iSV~eYfk~~Y~i~L~~p-~lP~v~~g~~~~~~y 291 (806)
|++|.++|+ +++|+|.||++.++++.+|..+ + |++|||+|||+++||++|+|| ++|||.+|+.++++|
T Consensus 297 Gl~V~t~~~--~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~y 374 (900)
T PLN03202 297 NLRVKVSPS--NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTY 374 (900)
T ss_pred CCEEEEecC--CceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeE
Confidence 999999995 4799999999999999999322 1 358999999999999999996 999999999888999
Q ss_pred ecccceeeccCccccCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCcccccceeeEEEcccceeeeeEEeCCCc
Q 003630 292 LPMELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPM 371 (806)
Q Consensus 292 lP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~ 371 (806)
||||||.|+|||+++++|++.|+++||++|+.+|.+|.+.|.++++.++++.++.|+ +|||+|+++|++|+||+||||+
T Consensus 375 lP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~-~fGi~i~~~~~~V~gRvL~~P~ 453 (900)
T PLN03202 375 FPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLR-SCGISISSQFTQVEGRVLPAPK 453 (900)
T ss_pred EcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHH-HCCcEecCCceEEeEEEcCCce
Confidence 999999999999999999999999999999999999999999999988888889999 9999999999999999999999
Q ss_pred eeeccCCcccccCCCCCcccccCceeecCccccceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCeecCCCCeeeccC---
Q 003630 372 LKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISS--- 448 (806)
Q Consensus 372 i~y~~~~~~~~v~p~~G~Wnl~~~~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~~~~~~~~--- 448 (806)
|.|+++. .+.|++|+||+++++|+.++.+++|+|++|.++ .+++.|++.|.+.|+.+||.+..+..+....
T Consensus 454 I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~ 527 (900)
T PLN03202 454 LKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSAR---CDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQF 527 (900)
T ss_pred eecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCc---hhHHHHHHHHHHHHHHCCceeCCCcccccccccc
Confidence 9998642 346789999999999999999999999988643 3689999999999999999997654321111
Q ss_pred ---CChhHHHHHHHHHHHHHhhcCCCceEEEEEccCC-CCC-CC------------Ccccccc---cc---------ccc
Q 003630 449 ---SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YV------------PRFLVKI---DR---------FAS 499 (806)
Q Consensus 449 ---~~~~~~~~~l~~~~~~~~~~~~~~~lv~~ilp~~-~~~-Y~------------~~~~~k~---~~---------l~~ 499 (806)
...+.++..++.+.+... ..++|+|||+|++ +.+ |+ ++||... ++ +|+
T Consensus 528 ~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~ 604 (900)
T PLN03202 528 RRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINA 604 (900)
T ss_pred ccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhh
Confidence 112345555555554432 4689999999975 455 87 5666522 11 679
Q ss_pred ccCcceeeeccccccCCCccCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchhhhchhhh
Q 003630 500 LVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKS 579 (806)
Q Consensus 500 KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i~~l~~~ 579 (806)
||||+||.++.+.+..+|++.+.+|||||+||+||+|++...|||||+|||+||..+++|.+.++.|.+++|+|++|+..
T Consensus 605 KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~ 684 (900)
T PLN03202 605 KLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKP 684 (900)
T ss_pred hhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhcc
Confidence 99999998875544567888888999999999999988655799999999999878999999999999999999987432
Q ss_pred cCCCCCccchhhHHHHHHHHHHHhc-CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecc
Q 003630 580 IQDPQWGLVHGGMIRELLIAFRRST-NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRC 658 (806)
Q Consensus 580 ~~~~~~~~~~~~~~~~~L~~f~~~~-~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh 658 (806)
..+. .+++|+.++|+.|++.+ |.+|++|||||||||||||.+|+++|+++|++||.+++++|+|+||||||+|||
T Consensus 685 ~~~~----~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh 760 (900)
T PLN03202 685 VGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNH 760 (900)
T ss_pred cccc----chHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccc
Confidence 2211 13789999999999865 699999999999999999999999999999999999998999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhc
Q 003630 659 RTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYT 738 (806)
Q Consensus 659 ~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~ 738 (806)
|+|||+.+ +.+||+||||||++||||..||||||||.++|||||||||+||+||+++++|+||+|||+|||+
T Consensus 761 ~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~ 832 (900)
T PLN03202 761 HTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV 832 (900)
T ss_pred eeeeeccC--------CCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999863 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccCChhhhHHHHHHHHhhhcccccCCCCCCcCCCCcccccccCCCCcccccccCCCceeC
Q 003630 739 YARCTRSVSIVPPAYYAYLAAFRARYYIEDETSAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 739 y~r~t~sVsip~P~yyA~~~a~R~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~y~ 806 (806)
|+|||+||||||||||||++|+|||+|++.+.++++++++++++...+.+...+.+||++++++||||
T Consensus 833 y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~Mfy~ 900 (900)
T PLN03202 833 YQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITSAGAVPVPELPRLHENVASSMFFC 900 (900)
T ss_pred hcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccCCCCccccccccccchhhcCCeeeC
Confidence 99999999999999999999999999998543333332222221112222446788999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-141 Score=1255.62 Aligned_cols=766 Identities=37% Similarity=0.594 Sum_probs=647.3
Q ss_pred cCCCc-eEEEEEEEccCCCChHHHH-HHHHHHHHHhhhccCCCCceeeeCCceeeecCCCCC--CCceEEEEcCCCCCCC
Q 003630 4 LAEKD-IHHYDVSITPWVTSKKINR-QIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPF--QSKEFIIELPDSDPRP 79 (806)
Q Consensus 4 ~~~~~-~y~Y~V~i~p~~~~k~~~r-~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~--~~~~~~v~l~~~~~~~ 79 (806)
.|+.. ++||+|++.++...+...+ .++..+........++...++|||+++|||..+|+. ...+|.+.++.+
T Consensus 71 ~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~~~---- 146 (876)
T KOG1041|consen 71 FTEESLFVHYSVGIFNEHGRRKVQCLRFFLDKVKNPELFELKSGGPAYDGQKTLYTKLELPEGVVTLDFDVISPKE---- 146 (876)
T ss_pred cCCcceEEEeeeeecCCCCchHHHHHHHHHHHHhccccccccCCcccccCCceeEeccccccccceEEEEecCCCC----
Confidence 35555 9999999999988777765 455444443322336666778999999999777773 333444444322
Q ss_pred CCCCCCCCCcEEEEEEEeccccchHHHHHHhccCCCCCChhHHHHHHHHHcccccCC-cceecccccCCCCCCccccCCc
Q 003630 80 SSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEK-HTVVGRSFFPTDHGPIGQLGDG 158 (806)
Q Consensus 80 ~~~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~~~~~-~~~~gr~ff~~~~~~~~~l~~G 158 (806)
... |+++|+++..+.+..+..++.+.....+.+++|+|++++++.++.. +...|++||.........+++|
T Consensus 147 ------~~~--~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g 218 (876)
T KOG1041|consen 147 ------WKK--FKVSIKKVSEVVLTKLNGFIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGG 218 (876)
T ss_pred ------Ccc--eEEEEEecccccccCccccccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCC
Confidence 111 9999999999889899999988877789999999999999998877 9999999998632234458999
Q ss_pred EEEEEeEEEEEeeecceeEEeeeccccccccCccHHHHHHHHhhhcCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEE
Q 003630 159 VEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRI 238 (806)
Q Consensus 159 le~~~G~~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~LkGl~V~~~~~~~~~~~~I 238 (806)
.|+|.||++|+|+++++++||+|+++++||++.+|.+++++++.-..+.+.......++++||||+|.++|++..|.|+|
T Consensus 219 ~e~~~Gf~~s~r~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i 298 (876)
T KOG1041|consen 219 VEIWEGFHKSIRPTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKI 298 (876)
T ss_pred ceeeeeeeeeeeeccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEE
Confidence 99999999999999999999999999999999999999999883222222222223399999999999999766789999
Q ss_pred ecccCCCCCCceEecCC--CceeeHHHHHHHHcCCcccCCCCCeeecCCCCCCceecccceeeccCccccC-CCCHHHHH
Q 003630 239 TGISSQPMSQLAFTDGS--ATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQ-RLNERQVT 315 (806)
Q Consensus 239 ~~i~~~~a~~~~F~~~~--g~~iSV~eYfk~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~-kL~~~q~~ 315 (806)
.+++..++.+++|..++ +.++||+|||+++||++|+||+||||++|..++..|+|||+|.|+||||+.+ +|++.|++
T Consensus 299 ~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~ 378 (876)
T KOG1041|consen 299 MGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQS 378 (876)
T ss_pred ecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCCCcccchhheecccCceeecccCCHHHHH
Confidence 99999999999995443 6899999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCcccccceeeEEEcccceeeeeEEeCCCceeeccCCcccccCCCCCcccccCc
Q 003630 316 ALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINK 395 (806)
Q Consensus 316 ~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~v~p~~G~Wnl~~~ 395 (806)
+|++.+++.|++|.+.|.++++..++..|++|+ +|||.|.++|+.|+||+||||.|.|+++ .....|..|.|+++++
T Consensus 379 ~m~k~~~~~P~~R~~~i~~~~~~~~~~~d~~l~-~fGi~i~~~~~~v~grvL~~P~L~~~~~--~~~~~p~~g~~~~~~k 455 (876)
T KOG1041|consen 379 AMIKASAVKPDQRQKLIKKVLKSSLKLSNPYLK-EFGIIVVSEPTQVEGRVLPPPKLKFGGN--EMPKNPTPGTWFMRNK 455 (876)
T ss_pred HhhhhhcCCHHHHHHHHHHHHHHhccccchhHH-hcCeEEecccccccccccCCceeeccCC--CCccCCCcCccccccC
Confidence 999999999999999999999998888899999 9999999999999999999999999975 3345788999999999
Q ss_pred eeecCccccceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCeecCCCCeeeccCCCh-hHHHHHHHHHHHHHhhcCCCceE
Q 003630 396 KMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNP-NQIEKALVDVHNRTTQQGKQLQL 474 (806)
Q Consensus 396 ~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l 474 (806)
+|+.|+.+..|+|++|....+.+. +.|+++|.+.|+..||.|.. +. .+... ..++.+++........ ..++++
T Consensus 456 ~~~~~~~i~~wavv~f~~~~~~~~-~~f~~~L~~~c~~~Gm~i~~-~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 529 (876)
T KOG1041|consen 456 KFVKPAKIKSWAVVNFSNSETLRQ-KQFVDELIKICKDKGMEIKR-PR---KWAPTEESLEDMITEKSSMEKA-AAGVQL 529 (876)
T ss_pred cccccceEEEEEEEEecccccccH-HHHHHHHHHHHHHcCccccc-cc---ccCcccchhHHHHHHHHhhhcc-CCCceE
Confidence 999999999999999987665556 99999999999999999976 44 22222 4555555544433221 357999
Q ss_pred EEEEccCCCCC-CC------------Ccccc------cccc---------cccccCcceeeeccccccCCCccCCCCeEE
Q 003630 475 LIIILPDVSGS-YV------------PRFLV------KIDR---------FASLVGGRNTVLVDAVQKRIPLVTDRPTII 526 (806)
Q Consensus 475 v~~ilp~~~~~-Y~------------~~~~~------k~~~---------l~~KlGG~n~~l~~~~~~~~p~~~~~~tmi 526 (806)
++||++++..+ |+ +.||. +..+ +|+||||+|+.+..+....+| ..+.||||
T Consensus 530 i~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~ 608 (876)
T KOG1041|consen 530 VFIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLF 608 (876)
T ss_pred EEEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEE
Confidence 99999999887 86 34443 2221 679999999988765333333 45789999
Q ss_pred EeEeeecCCCCCCC--CCceeEEEEeecCCCCceeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHHHHhc
Q 003630 527 FGADVTHPQPWGGT--SPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRST 604 (806)
Q Consensus 527 iG~DV~H~~~~~~~--~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~ 604 (806)
||+|||||+++... .|||||||||+|| +.++|.+.+++|.+|+|+|+++ .+|+.++|..|++.+
T Consensus 609 IG~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~-------------~~~~~~~l~~f~~~t 674 (876)
T KOG1041|consen 609 IGFDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL-------------GEMIRELLRSFRKST 674 (876)
T ss_pred EEEeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcch-------------HHHHHHHHHHHHHhc
Confidence 99999999998755 5999999999997 9999999999999999999987 999999999999999
Q ss_pred CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCCCCCCCCCCCCCCCCCccee
Q 003630 605 NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTV 684 (806)
Q Consensus 605 ~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTv 684 (806)
+.+|+||||||||||||||.+|+++|+.+|++||..+.++|.|+||||||+||||||||+.+..+ +..++.+|+|||||
T Consensus 675 ~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~-~~~~~~~Nv~pGT~ 753 (876)
T KOG1041|consen 675 RKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSK-DGKAQSQNVPPGTV 753 (876)
T ss_pred cCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCC-CccCCccCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999998752 34677899999999
Q ss_pred ecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHHhh
Q 003630 685 VDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARY 764 (806)
Q Consensus 685 Vd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~ 764 (806)
||+.||||.++|||||||.++||||||||||||+||+++++|+||+|||.|||+|+|||+|||||+|+||||++|+|||.
T Consensus 754 VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t~pvSiP~P~YyA~~~A~Rgr~ 833 (876)
T KOG1041|consen 754 VDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCTKPVSLPAPLYYAHEVAKRGRN 833 (876)
T ss_pred ecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeecCCCcCCchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCcCCCC-cccccccCCCCcccccccCCCceeC
Q 003630 765 YIEDETSAGGSTDGNRS-TAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 765 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~M~y~ 806 (806)
+.+....+.+...++.+ ..........+.++|.++..+||||
T Consensus 834 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~a 876 (876)
T KOG1041|consen 834 NYKEHLREKNSSAIYQSIVDLDALNSEEGYKEKAGLFGTRFNA 876 (876)
T ss_pred hhhhhccccCCCcccccccccchhhhhhHHHhhhcccceEEeC
Confidence 93221122222111111 1111223456789999999999998
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.9e-123 Score=995.97 Aligned_cols=674 Identities=24% Similarity=0.407 Sum_probs=587.6
Q ss_pred cccCCCceEEEEEEEccCCCChHHHHHHHHHHHHHhhhccCCCCceeeeCCceeeecCCCCCCCceEEEEcCCCCCCCCC
Q 003630 2 VQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRPSS 81 (806)
Q Consensus 2 ~~~~~~~~y~Y~V~i~p~~~~k~~~r~i~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~l~~~~~~~~~ 81 (806)
+.-|+|.||||||+|+|+++++++++.+ +..|. +.+| ...+|||. +||++++|+.+-.+ +..+
T Consensus 105 ~t~p~w~iyqYhVef~P~ves~rlR~~~----L~~h~-~lig-~~~~FDG~-iLfl~~k~eq~~te----l~~k------ 167 (845)
T KOG1042|consen 105 MTRPDWSIYQYHVEFEPDVESRRLREAL----LYNHT-DLIG-KGYAFDGT-ILFLKEKFEQKQTE----LVSK------ 167 (845)
T ss_pred ccCCCcEEEEEEEeeccccccHHHHHHH----HHHhH-hhhc-cceeecce-eehhhHHHhhhhhe----eecc------
Confidence 3458999999999999999998876543 44443 3345 45799997 99999999754221 1111
Q ss_pred CCCCCCCcEEEEEEEeccccchHHHHHHhccCCCCCChhHHHHHHHHHccc-ccCCcceecccccCCCCCCccccC-CcE
Q 003630 82 STRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAA-SSEKHTVVGRSFFPTDHGPIGQLG-DGV 159 (806)
Q Consensus 82 ~~~~~~~~~~~V~I~~~~~i~l~~l~~~l~~~~~~~~~~~iq~Lniilr~~-~~~~~~~~gr~ff~~~~~~~~~l~-~Gl 159 (806)
+.....++|+|++++++.. .+++.||++|+|+|.. ..+++.++||+||++. ...+|. ..+
T Consensus 168 ---s~~ge~i~I~ik~~~~~~~-------------t~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~--~~i~ip~~km 229 (845)
T KOG1042|consen 168 ---SRDGELIKITIKLTNELPS-------------TDPQCIQVFNLILRRSMKGLNLTQIGRNYYDPR--AKIEIPEFKM 229 (845)
T ss_pred ---cCCCceEEEEEEEeccccC-------------CChhHHHHHHHHHHHHHhhccHHHhhhccCCCC--cccccccccc
Confidence 2677889999999998754 5678999999999995 4688999999999988 456664 689
Q ss_pred EEEEeEEEEEeeecceeEEeeeccccccccCccHHHHHHHHhhhcCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEe
Q 003630 160 EYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRIT 239 (806)
Q Consensus 160 e~~~G~~~Svr~~~~~l~LniDv~~~~F~~~~~l~d~i~~~~~~~~~~l~~~~~~~l~~~LkGl~V~~~~~~~~~~~~I~ 239 (806)
++|+||-+|||..+..++|+.|++|++ .+..++.|+|..+.++ ++...+++++.+-|+.|.|.| |+|+|+|+
T Consensus 230 ~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~~~~~-----~~~~qe~~~~~~~glivLT~Y--NNktyrid 301 (845)
T KOG1042|consen 230 SLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRSCQHN-----TQRFQETVNKNVIGLIVLTRY--NNKTYRID 301 (845)
T ss_pred eecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHHHhhC-----HHHHHHHHHHHhcceEEEEec--CCceeeee
Confidence 999999999999999999999999997 6999999999888743 345778999999999999999 78999999
Q ss_pred cccCCCCCCceEecCCCceeeHHHHHHHHcCCcccCCCCCeeecCCC--------CCCceecccceeeccCccccCCCCH
Q 003630 240 GISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSE--------ARPIYLPMELSRIVAGQRYTQRLNE 311 (806)
Q Consensus 240 ~i~~~~a~~~~F~~~~g~~iSV~eYfk~~Y~i~L~~p~lP~v~~g~~--------~~~~ylP~Elc~i~~gQ~~~~kL~~ 311 (806)
+|++...+.++|..++| +||+.|||+++|||+|++-+||+|+...+ .+..++.||||+++ +|+|
T Consensus 302 dvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~~g~~~q~~~lIPELc~~T-------GLtd 373 (845)
T KOG1042|consen 302 DVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRPKGEPPQLAMLIPELCFLT-------GLTD 373 (845)
T ss_pred ccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCCCCCCccceeeehhhhhcc-------CCcH
Confidence 99999999999955555 99999999999999999999999998643 24579999999999 7999
Q ss_pred HHHH------HHHHhcCCChHHHHHHHHHHHHhcCCCC--cccccceeeEEEcccceeeeeEEeCCCceeeccCCccccc
Q 003630 312 RQVT------ALLQATCQRPREREDYIRMMARANAYNE--DTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASV 383 (806)
Q Consensus 312 ~q~~------~mik~a~~~P~~R~~~i~~~~~~~~~~~--~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~v 383 (806)
++++ +|.+++...|++|.+.+..+...+.-+. -..|+ .|||+++++.++|+|||||+.+|.+++. ...+
T Consensus 374 ~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~~l~~n~~~~~~lr-~Wgi~ld~~l~~v~gRil~sEkI~~~~~--~~~~ 450 (845)
T KOG1042|consen 374 EMRSDFQLMKAMAEHTRLSPQQRQDRLRRLIDRLQKNPNSVEELR-DWGISLDSNLAEVQGRILPSEKILFGNQ--KVPY 450 (845)
T ss_pred HHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHH-hcCcccCcchhhccceecCccceecCCc--ccCC
Confidence 9887 5888999999999999999877654433 25788 9999999999999999999999999873 2334
Q ss_pred CCCCCccc--ccCceeecCccccceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCeecCCCCeeeccCCChhHHHHHHHHH
Q 003630 384 NPGFGQWN--MINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDV 461 (806)
Q Consensus 384 ~p~~G~Wn--l~~~~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~ 461 (806)
.+..++|. .+..+++.+..+++|+|++..+ +..+++.|+++|.+.+..+||++..|..+.+.+++++.+.+++++.
T Consensus 451 ~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r--~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~ 528 (845)
T KOG1042|consen 451 EGKQADWSREFRTCGILRGSNLDNWAVIYPGR--NNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQV 528 (845)
T ss_pred CcchhhhhhhcccccccccCCCcceEEEecCc--cHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHh
Confidence 45568897 6778899999999999997653 6779999999999999999999998888888888899999888886
Q ss_pred HHHHhhcCCCceEEEEEccCCCCC-CC------------Ccccccc------cc-----------cccccCcceeeeccc
Q 003630 462 HNRTTQQGKQLQLLIIILPDVSGS-YV------------PRFLVKI------DR-----------FASLVGGRNTVLVDA 511 (806)
Q Consensus 462 ~~~~~~~~~~~~lv~~ilp~~~~~-Y~------------~~~~~k~------~~-----------l~~KlGG~n~~l~~~ 511 (806)
.. ..+|+|+||+|+.+++ |+ |+||... .. ++|||||..|.++
T Consensus 529 v~------~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~-- 600 (845)
T KOG1042|consen 529 VG------ADIQMVVCILPSDNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE-- 600 (845)
T ss_pred cc------CCceEEEEEecCCchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe--
Confidence 64 5799999999999988 88 6776432 11 4599999999885
Q ss_pred cccCCCccCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchhhhchhhhcCCCCCccchhh
Q 003630 512 VQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGG 591 (806)
Q Consensus 512 ~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~ 591 (806)
||+ +.+||||+||+|.+.. ...|++|+|||+| ...++|++.+..|...+|+.+.| +-
T Consensus 601 ----IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L-------------~~ 657 (845)
T KOG1042|consen 601 ----IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNL-------------KV 657 (845)
T ss_pred ----eec---ccceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHHHH-------------HH
Confidence 676 6799999999999753 3579999999999 99999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHH----HHHHHHHhhcCCCCCCEEEEEEeeccccccCCCCC
Q 003630 592 MIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMN----AIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEH 667 (806)
Q Consensus 592 ~~~~~L~~f~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~----~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~ 667 (806)
++..+|++|++.|..+|+||||||||||+||++++.+.|++ ++.+...++..+++|+++||||+||.++|||....
T Consensus 658 ~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~ 737 (845)
T KOG1042|consen 658 FLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGS 737 (845)
T ss_pred HHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCC
Confidence 99999999999999999999999999999999999999999 66666677777899999999999999999999864
Q ss_pred CCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhccccccCCcc
Q 003630 668 NRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVS 747 (806)
Q Consensus 668 ~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~sVs 747 (806)
. ..+||+||||||+.||.|..+||||+||+..|||+.||||+||+|++++++|.+|+|||.|||+|+||.++|+
T Consensus 738 ~------~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQrLtfKlCHlYyNW~GtiR 811 (845)
T KOG1042|consen 738 S------NAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQRLTFKLCHLYYNWPGTIR 811 (845)
T ss_pred c------cccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHHHHHHHhheeecCCccee
Confidence 2 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhHHHHHHHHhhhccc
Q 003630 748 IVPPAYYAYLAAFRARYYIED 768 (806)
Q Consensus 748 ip~P~yyA~~~a~R~r~~~~~ 768 (806)
+||||+|||++|+....-++.
T Consensus 812 VPApCqYAHKLAfLv~qslH~ 832 (845)
T KOG1042|consen 812 VPAPCQYAHKLAFLVAQSLHR 832 (845)
T ss_pred ccchhHHHHHHHHHHHhhhhh
Confidence 999999999999988877764
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=9.3e-95 Score=810.88 Aligned_cols=392 Identities=49% Similarity=0.802 Sum_probs=339.7
Q ss_pred ccccceeeEEEcccceeeeeEEeCCCceeeccCCcccccCCCCCcccccCceeecCccccceEEEeeCCCCCC----CcH
Q 003630 345 TLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRVEVWTCVNFSTRLNR----DVP 420 (806)
Q Consensus 345 ~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~v~p~~G~Wnl~~~~f~~~~~i~~W~vv~~~~~~~~----~~~ 420 (806)
++|+ +|||+|+++|++|+||+||||+|.|+++. ....+.+|+||+++++|+.++.+++|+|+++.++.+. +.+
T Consensus 1 ~~l~-~fGi~i~~~~~~v~grvL~~P~i~y~~~~--~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~ 77 (426)
T cd04657 1 PYLK-EFGISVSKEMITVPGRVLPPPKLKYGDSS--KTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADL 77 (426)
T ss_pred ChhH-hCCCEecCCeeEEeEEEcCCceeeccCCc--cccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHH
Confidence 3577 99999999999999999999999998632 2456779999999999999999999999998754322 379
Q ss_pred HHHHHHHHHHHhcCCeecCCCCeeeccCCChhHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC-CC------------
Q 003630 421 FQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YV------------ 487 (806)
Q Consensus 421 ~~f~~~L~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~ilp~~~~~-Y~------------ 487 (806)
+.|++.|.+.|+.+||.+. .... ...+.++..++.+.+.. ...++|++||+|+++.+ |+
T Consensus 78 ~~F~~~l~~~~~~~g~~~~--~~~~---~~~~~~~~~~~~~~~~~---~~~~~lv~~ilp~~~~~~Y~~iK~~~~~~~gI 149 (426)
T cd04657 78 RNFVDQLVKTVIGAGINIT--TAIA---SVEGRVEELFAKLKQAK---GEGPQLVLVILPKKDSDIYGRIKRLADTELGI 149 (426)
T ss_pred HHHHHHHHHHHHhcCCccc--cccc---ccchhHHHHHHHHHhhc---cCCCCEEEEEEcCCCcchHHHHHHHHhhcCCc
Confidence 9999999999999999986 2111 12233333333333221 13689999999998766 87
Q ss_pred Ccccc------c-ccc---------cccccCcceeeeccccccCCCccCCCCeEEEeEeeecCCCCC-CCCCceeEEEEe
Q 003630 488 PRFLV------K-IDR---------FASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWG-GTSPSIAAVVAS 550 (806)
Q Consensus 488 ~~~~~------k-~~~---------l~~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~-~~~pSi~a~v~S 550 (806)
++||. + .+. +|+||||+||.+++. ..+++...+|||||+||+||++++ ...|||+|+|||
T Consensus 150 ~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas 226 (426)
T cd04657 150 HTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVAS 226 (426)
T ss_pred ccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEe
Confidence 44543 2 122 569999999999764 223445689999999999999875 457999999999
Q ss_pred ecCCCCceeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHHHHhcCCCCceEEEEecCCChhhHHHHHHHH
Q 003630 551 MDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHE 630 (806)
Q Consensus 551 ~d~~~~~~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IiiyRDGVsegq~~~v~~~E 630 (806)
+| .++++|.+.+++|++++|++++| ++|++++|+.|++.||.+|++|||||||||||||.+|+++|
T Consensus 227 ~d-~~~~~y~~~~~~q~~~~e~i~~l-------------~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E 292 (426)
T cd04657 227 VD-WHLAQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEE 292 (426)
T ss_pred cC-CcccccceEEEEeCCCcchHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHH
Confidence 99 99999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccC
Q 003630 631 MNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSR 710 (806)
Q Consensus 631 ~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTar 710 (806)
+++|++||.+++++|+|+||||||+||||+|||+.+.+++ ..+.+||+||||||++||+|..+||||+||.++|||||
T Consensus 293 ~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~--~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTar 370 (426)
T cd04657 293 LPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDA--DGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTAR 370 (426)
T ss_pred HHHHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccc--cccCCCCCCCeEEecccCCCCceeEEEeccccCccCCC
Confidence 9999999999998899999999999999999999876431 12479999999999999999999999999999999999
Q ss_pred CCeeEEEecCCCCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHHhhhc
Q 003630 711 PTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYI 766 (806)
Q Consensus 711 Pt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~~~ 766 (806)
||||+||+||+++++|+||+|||+|||+|+|||++||+|+|+||||++|+|||+|+
T Consensus 371 Pt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~vsip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 371 PTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999996
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.1e-89 Score=772.43 Aligned_cols=411 Identities=29% Similarity=0.458 Sum_probs=363.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCc--ccccceeeEEEcccceeeeeEEeCCCceeeccCCcccccCCCCCcc
Q 003630 313 QVTALLQATCQRPREREDYIRMMARANAYNED--TLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQW 390 (806)
Q Consensus 313 q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~--~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~v~p~~G~W 390 (806)
.+.+|+++++.+|.+|++.|.++++.+..+.+ +.|+ +|||+|+++|++|+||+|+||.|.|+++. ...+.+|+|
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~-~~gi~i~~~~~~v~~rvL~~P~i~~~~~~---~~~~~~~~w 77 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLK-KWGIELDSNPLKIQGRVLPPEQIIMGNVF---VYANSNADW 77 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHH-HCCeEEcCCceEEeeEEeCCCeEEeCCCc---cCCCCCCCc
Confidence 36789999999999999999999998877665 5788 99999999999999999999999998742 223557888
Q ss_pred cc--cCceeecCccccceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCeecCCCCeeeccCCChhHHHHHHHHHHHHHhhc
Q 003630 391 NM--INKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQ 468 (806)
Q Consensus 391 nl--~~~~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 468 (806)
+. .+..|+.+.++++|+++++. .+.+.++.|++.|.+.++++||.+..|.++.+...+.+++.+.|++...
T Consensus 78 ~~~~~~~~~~~~~~~~~W~vi~~~--~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~----- 150 (448)
T cd04658 78 KREIRNQPLYDAVNLNNWVLIYPS--RDQREAESFLQTLKQVAGPMGIQISPPKIIKVKDDRIETYIRALKDAFR----- 150 (448)
T ss_pred chhhcCCcccCCcccCeEEEEEec--CCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCCCCHHHHHHHHHHhhc-----
Confidence 74 46678999999999999875 3678899999999999999999998777766665556667666666553
Q ss_pred CCCceEEEEEccCCCCC-CC------------Ccccc------cc-cc----------cccccCcceeeeccccccCCCc
Q 003630 469 GKQLQLLIIILPDVSGS-YV------------PRFLV------KI-DR----------FASLVGGRNTVLVDAVQKRIPL 518 (806)
Q Consensus 469 ~~~~~lv~~ilp~~~~~-Y~------------~~~~~------k~-~~----------l~~KlGG~n~~l~~~~~~~~p~ 518 (806)
.+++|++||+|++..+ |. ++||. +. +. +++||||+||.++.. .
T Consensus 151 -~~~~lvvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~ 223 (448)
T cd04658 151 -SDPQLVVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------P 223 (448)
T ss_pred -CCCcEEEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------C
Confidence 4799999999998766 87 45553 21 11 459999999998743 2
Q ss_pred cCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchh-hhchhhhcCCCCCccchhhHHHHHH
Q 003630 519 VTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEI-IQDLYKSIQDPQWGLVHGGMIRELL 597 (806)
Q Consensus 519 ~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~-i~~l~~~~~~~~~~~~~~~~~~~~L 597 (806)
....+|||||+||+||+++ ..||++|+|||+| .++++|++.++.|..++|+ +++| ++|++++|
T Consensus 224 ~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l-------------~~~~~~~l 287 (448)
T cd04658 224 FILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSL-------------GKSMKKAL 287 (448)
T ss_pred CCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHH-------------HHHHHHHH
Confidence 3458899999999999874 3699999999999 9999999999999999998 8888 99999999
Q ss_pred HHHHHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCCCCCCCCCCCCCC
Q 003630 598 IAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSG 677 (806)
Q Consensus 598 ~~f~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~ 677 (806)
..|++.+|.+|++|||||||||||||.+|+++|+++|++||.++..+|+|+||||+|+||||+|||+.+. ++.+
T Consensus 288 ~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~------~~~~ 361 (448)
T cd04658 288 KAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGG------NNFS 361 (448)
T ss_pred HHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCC------CCCC
Confidence 9999999999999999999999999999999999999999999888899999999999999999999764 2368
Q ss_pred CCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhccccccCCcccCChhhhHHH
Q 003630 678 NILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYL 757 (806)
Q Consensus 678 N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~ 757 (806)
|||||||||++||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||+|||+|+|+||||+
T Consensus 362 N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~~ 441 (448)
T cd04658 362 NPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHK 441 (448)
T ss_pred CCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 003630 758 AAFRAR 763 (806)
Q Consensus 758 ~a~R~r 763 (806)
+|+|+.
T Consensus 442 ~a~~~g 447 (448)
T cd04658 442 LAFLVG 447 (448)
T ss_pred HHHHhc
Confidence 999874
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.5e-81 Score=695.49 Aligned_cols=357 Identities=30% Similarity=0.482 Sum_probs=309.3
Q ss_pred ceeeeeEEeCCCceeeccCCcccccCCCCCcccccCceeecCccc-cceEEEeeCCCCCCCcHHHHHHHHHHHHhcCCee
Q 003630 359 LTSVDARILPAPMLKYHETGQEASVNPGFGQWNMINKKMFNGGRV-EVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMV 437 (806)
Q Consensus 359 ~~~v~grvL~~P~i~y~~~~~~~~v~p~~G~Wnl~~~~f~~~~~i-~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~G~~ 437 (806)
+++|+||+||||.|.|+++ |++++++|+.++.+ ++|+|+++.+ +..++|++.|.+.++++||.
T Consensus 2 ~~~v~grvL~~p~i~~~~~------------w~~~~~~f~~~~~~~~~W~vi~~~~----~~~~~f~~~l~~~~~~~G~~ 65 (393)
T cd02826 2 PLILKGRVLPKPQILFKNK------------FLRNIGPFEKPAKITNPVAVIAFRN----EEVDDLVKRLADACRQLGMK 65 (393)
T ss_pred ceEEeeEecCCCceEecCC------------ccccCCeeCCCCEeCCeEEEEEccc----HHHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999741 99999999999998 9999998753 34669999999999999999
Q ss_pred cCC-CCeeeccCC--ChhHHHHHHHHHHHHHhhcCCCceEEEEEccCCCCC-CC-----------Cccccc--------c
Q 003630 438 FNP-QPVIPISSS--NPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YV-----------PRFLVK--------I 494 (806)
Q Consensus 438 i~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~lv~~ilp~~~~~-Y~-----------~~~~~k--------~ 494 (806)
+.+ ++...+... +.+++.+.|+++.+ .+++|++||+|+++.+ |+ ++||.. .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lv~~ilp~~~~~~Y~~iK~~~~~~gI~tQ~i~~~t~~~~~~ 139 (393)
T cd02826 66 IKEIPIVSWIEDLNNSFKDLKSVFKNAIK------AGVQLVIFILKEKKPPLHDEIKRLEAKSDIPSQVIQLKTAKKMRR 139 (393)
T ss_pred cCCCCCcceeecccccHHHHHHHHHHHhh------cCCCEEEEEEcCCCccHHHHHHHHHhccCCceEEEehhhhccccc
Confidence 987 443333222 34566666665543 4799999999998867 87 455532 1
Q ss_pred cc---------cccccCcceeeeccccccCCCccCCCCeEEEeEeeecCCCC-CCCCCceeEEEEeecCCCCceeEEEEE
Q 003630 495 DR---------FASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPW-GGTSPSIAAVVASMDWPEVAKYRGLVS 564 (806)
Q Consensus 495 ~~---------l~~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~-~~~~pSi~a~v~S~d~~~~~~y~~~~~ 564 (806)
++ +++||||+||.|+.. .+...+|||||+||+|++++ ....||++|+|||+| .. +.|.+.++
T Consensus 140 ~~~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~~ 211 (393)
T cd02826 140 LKQTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFLY 211 (393)
T ss_pred cHHHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEEE
Confidence 11 569999999999753 12357899999999999886 334799999999999 55 44456678
Q ss_pred EcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHHHHhcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcC
Q 003630 565 AQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEE 643 (806)
Q Consensus 565 ~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~-~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~ 643 (806)
.|..++|++++| ++|++++|..|++++|. +|++|||||||||||||.+|+++|+++|++||. +..
T Consensus 212 ~~~~~~~~~~~l-------------~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~ 277 (393)
T cd02826 212 VQPSREVKLQDL-------------GEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEE 277 (393)
T ss_pred EecCccchHHHH-------------HHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCC
Confidence 898899999988 99999999999999999 999999999999999999999999999999999 778
Q ss_pred CCCCCEEEEEEeeccccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCC
Q 003630 644 GYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRF 723 (806)
Q Consensus 644 ~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~ 723 (806)
+|+|+||||+|+||||+|||+.+.++ ..+||+||||||++||+|..+||||+||.++|||+|||||+||+||+++
T Consensus 278 ~~~p~it~Ivv~Krh~~Rff~~~~~~-----~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~~ 352 (393)
T cd02826 278 SYRPKLVIIVVQKRHNTRFFPNEKNG-----GVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKNW 352 (393)
T ss_pred CCCCCEEEEEEeccccceeccCCCCC-----CCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCCC
Confidence 89999999999999999999976532 2489999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHHhh
Q 003630 724 TADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARY 764 (806)
Q Consensus 724 ~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~ 764 (806)
++|+||+|||+|||+|+|||++||+|+|+||||++|+|||+
T Consensus 353 ~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 353 SLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999985
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=3.8e-65 Score=551.07 Aligned_cols=247 Identities=44% Similarity=0.696 Sum_probs=221.7
Q ss_pred cccccCcce-eeeccccccCCCccCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchhhhc
Q 003630 497 FASLVGGRN-TVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQD 575 (806)
Q Consensus 497 l~~KlGG~n-~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i~~ 575 (806)
+++||||.| |.++.. ...++ .+|||||+||+|++++....||++|+|+|+| .+.++|.+.+..|..++|++++
T Consensus 54 inaKlGG~n~~~~~~~--~~~~~---~~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~ 127 (302)
T PF02171_consen 54 INAKLGGINPWLLDSP--PSIDL---KNTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDN 127 (302)
T ss_dssp HHHHTTTBSEEECSCS--SGSSE---SEEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHH
T ss_pred HHHhCCCeeeeecccc--ccccc---CceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcc
Confidence 569999996 444422 11112 7899999999999987655799999999999 9999999999999999999999
Q ss_pred hhhhcCCCCCccchhhHHHHHHHHHHHhcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEE
Q 003630 576 LYKSIQDPQWGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVV 654 (806)
Q Consensus 576 l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~-~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv 654 (806)
| +++++++|+.|++.++. +|++|||||||||||||.+|+++|+++|++||.++.++|+|++|||+|
T Consensus 128 l-------------~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v 194 (302)
T PF02171_consen 128 L-------------EEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVV 194 (302)
T ss_dssp H-------------HHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEE
T ss_pred h-------------hhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEe
Confidence 8 99999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCCCCccCCCeeEEEecCCCCChhHHHHHHHH
Q 003630 655 QKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNN 734 (806)
Q Consensus 655 ~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~ 734 (806)
+||||+|||+.+.+ +...||+||||||+.+|+|..+||||+||.++|||+|||||+||+||++++.|+||+|||+
T Consensus 195 ~K~~~~R~f~~~~~-----~~~~N~~~Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~ 269 (302)
T PF02171_consen 195 QKRHNTRFFPQNGR-----DGLQNPPPGTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYDDSNLSMDELQQLTYS 269 (302)
T ss_dssp ESSSS--EEESSSE-----ETTTEECTTEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEESSCSCHHHHHHHHHH
T ss_pred eccccceEeecccc-----cccCCCCCCeeeccceeeecceeeeeeecccccccccccEEEEecCcccccHHHHHHHHHH
Confidence 99999999998763 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCcccCChhhhHHHHHHHHhhhcc
Q 003630 735 LCYTYARCTRSVSIVPPAYYAYLAAFRARYYIE 767 (806)
Q Consensus 735 Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~~~~ 767 (806)
|||+|+||++++|+|+|+||||++|+|++++++
T Consensus 270 L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 270 LCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp HTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999864
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=3.3e-39 Score=361.31 Aligned_cols=259 Identities=22% Similarity=0.236 Sum_probs=201.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCCceEEEEEccCCC------CC-CC-----------Cccccc------c-cc---------
Q 003630 451 PNQIEKALVDVHNRTTQQGKQLQLLIIILPDVS------GS-YV-----------PRFLVK------I-DR--------- 496 (806)
Q Consensus 451 ~~~~~~~l~~~~~~~~~~~~~~~lv~~ilp~~~------~~-Y~-----------~~~~~k------~-~~--------- 496 (806)
.+.+..+++...++. ..+++++||++|++. .+ |. ++||.. . +.
T Consensus 93 ~~~~~~a~~~~~~~~---~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~~~~giptQ~v~~~tl~~~~~~~~~~~nial 169 (404)
T cd04659 93 AEAIIEAVDLALSES---SQGVDVVIVVLPEDLKELPEEFDLYDRLKAKLLRLGIPTQFVREDTLKNRQDLAYVAWNLAL 169 (404)
T ss_pred hHHHHHHHHHHHHhh---cCCCCEEEEEeCHHHhhcccccCHHHHHHHHHHhcCCceEEeeHHHcCccccHHHHHHHHHH
Confidence 345555666655543 247899999999875 44 66 556642 1 11
Q ss_pred -cccccCcceeeeccccccCCCccCCCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCceeEEEEEEcCCCchhh--
Q 003630 497 -FASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEII-- 573 (806)
Q Consensus 497 -l~~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~E~i-- 573 (806)
|++|+||+||.|+.. ...+|||||+||+|+..+....+++|++ .| .+.. +....+...++.+
T Consensus 170 ~i~aKlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~v---f~-~~g~---g~~~~~~~~~~~~~~ 234 (404)
T cd04659 170 ALYAKLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQV---FD-SDGL---GLILRGAPIEEPTED 234 (404)
T ss_pred HHHHhcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEE---Ec-CCCC---EEEEecCccCCcccc
Confidence 349999999999642 2467999999999998652223444433 33 3321 1222223333333
Q ss_pred ---hchhhhcCCCCCccchhhHHHHHHHHHHHhcCC-CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCE
Q 003630 574 ---QDLYKSIQDPQWGLVHGGMIRELLIAFRRSTNF-KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPV 649 (806)
Q Consensus 574 ---~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~-~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~i 649 (806)
+++ .++++++|..|++.++. +|+||||||||+. .++|+++|++||.++. |++
T Consensus 235 ~~~~~~-------------~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i 290 (404)
T cd04659 235 RSPADL-------------KDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKV 290 (404)
T ss_pred cCHHHH-------------HHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceE
Confidence 345 89999999999999988 9999999999994 6899999999999874 899
Q ss_pred EEEEEeeccccccCCCCCCCCCCCCCCCCCCcceeecccccCCCcccEEEeecCCC--------CCccCCCeeEEEecCC
Q 003630 650 TFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGI--------QGTSRPTRYHVLYDEN 721 (806)
Q Consensus 650 t~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~--------qGTarPt~Y~Vl~de~ 721 (806)
+||+|+||||+|||+.+..+ + ..||++|||||.+ .+||||++|.+. +||+||+| |++|+.
T Consensus 291 ~~I~V~k~~~~R~f~~~~~~----~-~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp~Pl~--v~~~~~ 358 (404)
T cd04659 291 DLVEVIKSGPHRLFRFGTYP----N-GFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTPRPLL--LRRHSG 358 (404)
T ss_pred EEEEEEecCCcceEEecCCC----C-CCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCCCcEE--EEEccC
Confidence 99999999999999975431 1 2799999999954 599999999886 99999999 888999
Q ss_pred CCChhHHHHHHHHhhhccccccC-CcccCChhhhHHHHHHHHh
Q 003630 722 RFTADGLQVLTNNLCYTYARCTR-SVSIVPPAYYAYLAAFRAR 763 (806)
Q Consensus 722 ~~~~d~lq~lt~~Lc~~y~r~t~-sVsip~P~yyA~~~a~R~r 763 (806)
+.+.|+|+++||.|||+|+|++. ++++|+|+||||++|+...
T Consensus 359 ~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~~ 401 (404)
T cd04659 359 NTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLLK 401 (404)
T ss_pred CCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHHh
Confidence 99999999999999999999988 9999999999999997654
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.91 E-value=1.7e-24 Score=204.82 Aligned_cols=133 Identities=33% Similarity=0.562 Sum_probs=109.5
Q ss_pred ccHHHHHHHHhhhcCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCceEecCCCceeeHHHHHHHHcC
Q 003630 191 ILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYN 270 (806)
Q Consensus 191 ~~l~d~i~~~~~~~~~~l~~~~~~~l~~~LkGl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~iSV~eYfk~~Y~ 270 (806)
++|+|++.++.+... +......+++++.|+|++|.++|+++.+.|+|.+|+++.+++.+|.+.+|+.+||+|||+++||
T Consensus 1 ~~vld~~~~~~~~~~-~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~ 79 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQ-RNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYN 79 (135)
T ss_dssp HHHHHHHHHHCTCSS-HHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT
T ss_pred CcHHHHHHHHHhhhc-ccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhh
Confidence 478999998873211 1112344559999999999999987668999999999999999996667999999999999999
Q ss_pred CcccCCCCCeeecCCCCC--CceecccceeeccCccccCCCCHHHHHHHHHhcCCC
Q 003630 271 IALQFTSLPALLAGSEAR--PIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQR 324 (806)
Q Consensus 271 i~L~~p~lP~v~~g~~~~--~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mik~a~~~ 324 (806)
++|+||+||||++++..+ ++|||||||.|+|+|++.+++.+.+++.|++.+|.+
T Consensus 80 i~L~~p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 80 IRLKYPDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp ---SSTTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred cccccCCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 999999999999998777 999999999999999999999999999999999863
No 10
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.85 E-value=4e-21 Score=175.78 Aligned_cols=110 Identities=29% Similarity=0.398 Sum_probs=96.4
Q ss_pred CccHHHHHHHHhh--hcCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCceEecCCCceeeHHHHHHH
Q 003630 190 PILVTEFVQNYCR--NLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRE 267 (806)
Q Consensus 190 ~~~l~d~i~~~~~--~~~~~l~~~~~~~l~~~LkGl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~iSV~eYfk~ 267 (806)
+++|+|+++++++ +..+++.+.++.++.++|+|++|.++|++.++.|+|.+|++.+|++. |.+.+|+++||+|||++
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~ 79 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKE 79 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHH
Confidence 3689999999983 22345667788899999999999999975568999999999999988 75667889999999999
Q ss_pred HcCCcccCCCCCeeecCCC---CCCceecccceeec
Q 003630 268 RYNIALQFTSLPALLAGSE---ARPIYLPMELSRIV 300 (806)
Q Consensus 268 ~Y~i~L~~p~lP~v~~g~~---~~~~ylP~Elc~i~ 300 (806)
+||++|+||+||||++|++ .+.+|||||||.|+
T Consensus 80 kY~~~l~~p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 80 RYNLTLTDLNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred HcCCcccCCCCCEEEecCcccCCCceEEchheEEeC
Confidence 9999999999999999987 67899999999974
No 11
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.83 E-value=3.9e-20 Score=169.71 Aligned_cols=111 Identities=42% Similarity=0.666 Sum_probs=95.0
Q ss_pred CccHHHHHHHHhhhc-CCCCCHHHHHHHHHHhcCcEEEEeecC-CcceEEEecccCCCCCCceEecCCC-ceeeHHHHHH
Q 003630 190 PILVTEFVQNYCRNL-SRPLSDQVRLKVKKELKGIKVVLTHLE-TSNSHRITGISSQPMSQLAFTDGSA-TSMSVIQYFR 266 (806)
Q Consensus 190 ~~~l~d~i~~~~~~~-~~~l~~~~~~~l~~~LkGl~V~~~~~~-~~~~~~I~~i~~~~a~~~~F~~~~g-~~iSV~eYfk 266 (806)
.++|+|+++++++.. ...+.+.++.++.++|+|++|.++|.+ ..|.|+|.||+..++.+.+|..++| +++||+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~ 80 (114)
T cd02846 1 AQPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFK 80 (114)
T ss_pred CccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHH
Confidence 368999999998321 123456788899999999999999974 3579999999999999999954544 5899999999
Q ss_pred HHcCCcccCCCCCeeecCCCCCCceecccceeec
Q 003630 267 ERYNIALQFTSLPALLAGSEARPIYLPMELSRIV 300 (806)
Q Consensus 267 ~~Y~i~L~~p~lP~v~~g~~~~~~ylP~Elc~i~ 300 (806)
++||++|+||+||||++|++.+++|+|||+|.|+
T Consensus 81 ~~y~~~l~~p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 81 EKYNIRLKYPNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred HHcCCcccCCCCCEEEeCCCCCCcEecceeEEeC
Confidence 9999999999999999999888999999999984
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.80 E-value=2.3e-19 Score=163.45 Aligned_cols=105 Identities=24% Similarity=0.408 Sum_probs=90.3
Q ss_pred ccHHHHHHHHhhhcCCCCCHHHHHHHHHHhcCcEEEEeecCCcceEEEecccCCCCCCceEecCCCceeeHHHHHHHHcC
Q 003630 191 ILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYN 270 (806)
Q Consensus 191 ~~l~d~i~~~~~~~~~~l~~~~~~~l~~~LkGl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g~~iSV~eYfk~~Y~ 270 (806)
.+++|++.++++... ....++++.+.|+|++|.++| +++.|+|.+|++++++.++|...+|..+||+|||+++||
T Consensus 2 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~V~t~y--n~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~ 76 (117)
T cd02845 2 TTVLDRMHKLYRQET---DERFREECEKELIGSIVLTRY--NNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYN 76 (117)
T ss_pred eeHHHHHHHHHHhcc---cHHHHHHHHHHcCCCEEEEee--CCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcC
Confidence 468889888874311 125678999999999999999 568999999999999999996556678999999999999
Q ss_pred CcccCCCCCeeecCCC--------CCCceecccceeec
Q 003630 271 IALQFTSLPALLAGSE--------ARPIYLPMELSRIV 300 (806)
Q Consensus 271 i~L~~p~lP~v~~g~~--------~~~~ylP~Elc~i~ 300 (806)
+.|+||+||||.++++ .+++|||||||.++
T Consensus 77 i~I~~~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~lt 114 (117)
T cd02845 77 IEITDLNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLT 114 (117)
T ss_pred CccccCCCCcEEeeccccccCCCCCcEEEEchHHhhhc
Confidence 9999999999999864 34799999999998
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.57 E-value=2.2e-15 Score=115.56 Aligned_cols=52 Identities=62% Similarity=1.052 Sum_probs=42.1
Q ss_pred ceecccccCCCCCCccccCCcEEEEEeEEEEEeeecceeEEeeeccccccccC
Q 003630 138 TVVGRSFFPTDHGPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEP 190 (806)
Q Consensus 138 ~~~gr~ff~~~~~~~~~l~~Gle~~~G~~~Svr~~~~~l~LniDv~~~~F~~~ 190 (806)
+.+||+||+++.+ ..+|++|+|+|+|||+|+||+.++|.||||+++++||++
T Consensus 1 ~~vgrsFF~~~~~-~~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 1 TAVGRSFFPPSGG-PVDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred CccccccCCCCCC-CccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 3689999987743 378999999999999999999999999999999999975
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.49 E-value=3.8e-14 Score=131.89 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=70.0
Q ss_pred HHHHhcCcEEEEeecCCcceEEEecccCCCCCCceEecCCC-ceeeHHHHHHHHcCCcccCCCCCeeecCC---------
Q 003630 216 VKKELKGIKVVLTHLETSNSHRITGISSQPMSQLAFTDGSA-TSMSVIQYFRERYNIALQFTSLPALLAGS--------- 285 (806)
Q Consensus 216 l~~~LkGl~V~~~~~~~~~~~~I~~i~~~~a~~~~F~~~~g-~~iSV~eYfk~~Y~i~L~~p~lP~v~~g~--------- 285 (806)
..+.|+|++|.++| +++.|+|.+|+ +.+++++|..++| +.+|++|||+++||+.|+||+||||+++.
T Consensus 27 ~~~~l~g~~V~t~h--n~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~~~~~~NlL~ 103 (135)
T cd02844 27 CACDLKGSVVTAPH--NGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQIFNLHNLLH 103 (135)
T ss_pred cHHHhcCCEEEEcC--CCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEecccccceecc
Confidence 46789999999999 56899999999 9999999944455 57999999999999999999999998751
Q ss_pred -----------CC---CCceecccceeecc
Q 003630 286 -----------EA---RPIYLPMELSRIVA 301 (806)
Q Consensus 286 -----------~~---~~~ylP~Elc~i~~ 301 (806)
+. ..++||||||.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 104 NRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred cccccccccccccccceEEEeChHHhcccc
Confidence 01 14699999999863
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.69 E-value=2.6e-08 Score=89.41 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=58.1
Q ss_pred HHHhcCcEEEEeecCCc--ceEEEecccCCCCCCceEecCCCceeeHHHHHHHHcCCcccCCCCCeeecCC
Q 003630 217 KKELKGIKVVLTHLETS--NSHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGS 285 (806)
Q Consensus 217 ~~~LkGl~V~~~~~~~~--~~~~I~~i~~~~a~~~~F~~~~g~~iSV~eYfk~~Y~i~L~~p~lP~v~~g~ 285 (806)
.+.+.|..|.+.|++.. ++|+|.+|.++..+.++| ..++ .+|++|||+++||+.|++++||+|.|+.
T Consensus 38 ~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F-~~~~-~~Ty~eYyk~KY~I~I~~~~QPLL~v~~ 106 (122)
T cd02843 38 AEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKF-PGPE-YETFEEYYKKKYKLDIQNLNQPLLDVDH 106 (122)
T ss_pred HHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCC-CCCC-CccHHHHHHHhcCeEeccCCCCcEeecC
Confidence 35689999999996421 699999999999999999 3334 7999999999999999999999999974
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=9e-05 Score=82.07 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=81.1
Q ss_pred CCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCCCCCCCCCCCCCCCCCcceeec
Q 003630 607 KPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVD 686 (806)
Q Consensus 607 ~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd 686 (806)
.-.+|++.|||- +...|++++++.=..+ ...++++.+- +.+-+||..+.. .+ |..+-
T Consensus 537 ~~n~iV~lRDG~-------l~~~E~aavkeyg~el----gsn~ev~~i~-knNp~vf~~e~~-------i~----g~f~~ 593 (685)
T COG1431 537 SRNLIVTLRDGK-------LVAGEIAAVKEYGGEL----GSNPEVNRIL-KNNPWVFAIEGE-------IW----GAFVR 593 (685)
T ss_pred ccCeeEEEecCc-------cchHHHHHHHHHhhhc----CCChhhheec-ccCCeEEEecce-------ee----eEEEe
Confidence 446799999995 4466777766654443 3455555554 456668887542 11 44443
Q ss_pred ccccCCCcccEEEee---cCCCCCccCCCeeEEEecCCCCChhHHHHHHHHhhhccccccCC--cccCChhhhHHHHHHH
Q 003630 687 TEICHPTEFDFYLNS---HAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRS--VSIVPPAYYAYLAAFR 761 (806)
Q Consensus 687 ~~it~p~~~dFyL~s---h~~~qGTarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~s--Vsip~P~yyA~~~a~R 761 (806)
.++..|. +|. .....||-+|.. +=.-+..+.-|-| .|.|.|+-+.+-.... .+||||++|||++.+.
T Consensus 594 ~~~s~~h-----~~~~~ynpv~~gT~~pi~--~r~~~g~l~~e~i-~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl 665 (685)
T COG1431 594 LDGSTVH-----LCCSPYNPVRRGTPRPIA--LRRRDGKLDGELI-GLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKL 665 (685)
T ss_pred cCCcccc-----cccCCCCceecCCCcccc--cccccCccchhhH-HHHHHhhhhccCCCCCceecCCcchhhhHHHHHH
Confidence 2221111 111 234568888876 3233333444444 4999999998877777 9999999999999998
Q ss_pred Hhhh
Q 003630 762 ARYY 765 (806)
Q Consensus 762 ~r~~ 765 (806)
++.-
T Consensus 666 ~~~~ 669 (685)
T COG1431 666 ARYG 669 (685)
T ss_pred Hhcc
Confidence 8863
No 17
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=90.95 E-value=0.47 Score=44.72 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=47.7
Q ss_pred ccCCCeeEEEecCCCCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHHhhhccc
Q 003630 708 TSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIED 768 (806)
Q Consensus 708 TarPt~Y~Vl~de~~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~~~~~ 768 (806)
.....=.+|+.-...-++++|-.|||.||+.+.-+...+.+|.|+++|.++ +.|+-+
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~----~eYi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQA----KEYILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHH----HHHccc
Confidence 455666778877667789999999999999999999999999999988774 567654
No 18
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=81.97 E-value=7.6 Score=37.35 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCC-ceeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHH
Q 003630 521 DRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEV-AKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIA 599 (806)
Q Consensus 521 ~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~-~~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 599 (806)
.-|.-|-++|+||-... -.|+++|.-.| ..+ .+.+=.+.+... +-.+|+ .+|.|.|..
T Consensus 9 ~~P~rIE~fDiSh~~G~----~~Vgs~Vvf~~-G~~~k~~YR~f~i~~~--~~~dDy--------------~~M~Evl~R 67 (155)
T PF08459_consen 9 KLPRRIECFDISHIQGS----DTVGSMVVFEN-GKPDKSEYRRFNIKTV--DGGDDY--------------AAMREVLTR 67 (155)
T ss_dssp S--SEEEEEEEEECTTT----CEEEEEEEEET-TEE-GGG-EEEEEE----STT-HH--------------HHHHHHHHH
T ss_pred CCCCEEEEEECcccCCc----ccEEEEEEEEC-CccChhhCceEecCCC--CCCcHH--------------HHHHHHHHH
Confidence 35678999999998632 35777777555 321 112222333321 112444 455666655
Q ss_pred HHHh----cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeec--cccc
Q 003630 600 FRRS----TNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKR--CRTR 661 (806)
Q Consensus 600 f~~~----~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Kr--h~~R 661 (806)
+.+. ...+|+-|+| || +.||+. +.++|+.+++- . +-+|-..|+ |.++
T Consensus 68 R~~~~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl--~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 68 RFKRLKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGL--N--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp HHCCCHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT--------EEEEESSSSE---
T ss_pred HHhcccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCC--C--eEEEEEEeccccccc
Confidence 5543 2368998777 66 456765 44577776632 2 455555554 5565
No 19
>PRK11617 endonuclease V; Provisional
Probab=80.30 E-value=59 Score=33.36 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHHhhhc
Q 003630 722 RFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYI 766 (806)
Q Consensus 722 ~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~r~~~ 766 (806)
+.+.|+--.++-.+|- --++|.|+..||.+|.+.+...
T Consensus 180 ~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 180 RVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred CcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 5788888899988773 4489999999999998877543
No 20
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=67.15 E-value=36 Score=40.17 Aligned_cols=109 Identities=23% Similarity=0.214 Sum_probs=61.2
Q ss_pred CeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCc--eeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 523 PTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVA--KYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 523 ~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~--~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
+.-|-++|+||-+.. -.|+++|.-.| ..+. .|. .+.+.. .+-.+|+ .+|.|.|...
T Consensus 381 ~~rIE~fDiSh~~G~----~~V~smVvf~~-G~~~k~~YR-~f~i~~--~~~~dDy--------------a~m~Evl~RR 438 (574)
T TIGR00194 381 IKRIEIFDISHIDGS----QTVGSMVVFED-GKPLKASYR-RYNINS--ITGGDDY--------------AAMREVLRRR 438 (574)
T ss_pred CCEEEEEECCccCCC----cceEEEEEEeC-CccChhhCC-eeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 368899999998742 36788887666 3322 122 122221 1112444 4455555444
Q ss_pred HHh--c--C-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee--ccccccCCCC
Q 003630 601 RRS--T--N-FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK--RCRTRLFPAE 666 (806)
Q Consensus 601 ~~~--~--~-~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K--rh~~Rff~~~ 666 (806)
++. . . .+|+=||| || +.||+..+ .+++.+++- ...|.+|-..| ||.+++|..+
T Consensus 439 ~~r~~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~--~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 439 YSSIQKKNNLPLPDLILI--DG-GKGQLNAA--------LEVLKSLGV--VNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred HhhhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC--CCCCcEEEEEecCCCceEEEeCC
Confidence 433 1 1 48987776 65 56787644 456665532 12366777777 7777887643
No 21
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=57.83 E-value=95 Score=37.16 Aligned_cols=110 Identities=23% Similarity=0.294 Sum_probs=62.5
Q ss_pred CCCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHH
Q 003630 521 DRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIA 599 (806)
Q Consensus 521 ~~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 599 (806)
.-|..|-++|+||-... -.|+++|.-.| ..+.+ .+=.+.+.... .-.+|+ .+|.|.|..
T Consensus 452 ~~p~rIE~fDiSh~~G~----~~VasmVvf~~-G~p~k~~YR~f~ik~~~-~~~DD~--------------asM~Evl~R 511 (691)
T PRK14672 452 RIPTLIEGFDISHLGGK----YTVASLICFKN-GAPDTKNYRLFNLRAHD-TRIDDF--------------ASMREAIAR 511 (691)
T ss_pred CCCCeEEEEECCccCCc----CceEEEEEEEC-CccChhhCCeeeccCCC-CCCchH--------------HHHHHHHHH
Confidence 35789999999998742 36788887666 32221 11112222110 113454 455666655
Q ss_pred HHHhc---CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCC
Q 003630 600 FRRST---NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPA 665 (806)
Q Consensus 600 f~~~~---~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 665 (806)
.+.+. +.+|+-||| || +-||+..+ ++++.+++- .|.+|-..||.-.-|+|.
T Consensus 512 R~~r~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elgl----~i~vigLaKr~e~i~~~~ 565 (691)
T PRK14672 512 RYTHTPEGYTLPDLILV--DG-GIGHVSAA--------QHVLDALGL----SIPLVGLAKRAEELFIPN 565 (691)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecccEEEeCC
Confidence 54432 258987776 55 45776544 566666532 467888889764444443
No 22
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=54.80 E-value=72 Score=32.38 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.9
Q ss_pred CCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHH
Q 003630 722 RFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAF 760 (806)
Q Consensus 722 ~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~ 760 (806)
+.+.|+--+++-.+| +.-++|.|+..||++|.
T Consensus 176 ~i~l~~A~~~v~~~~-------~~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 176 RIDLETAVELVLKCC-------KGYRLPEPTRLADLLSR 207 (208)
T ss_pred CcCHHHHHHHHHHHc-------cCCCCCcHHHHHHHHhc
Confidence 578888888888877 44789999999999974
No 23
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=45.23 E-value=1.7e+02 Score=34.63 Aligned_cols=106 Identities=23% Similarity=0.216 Sum_probs=60.3
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
.|.-|-++|+||-... -.|+++|.-.| ..+.+ .+=.+.+... +-.+|+ .+|.|.|...
T Consensus 360 ~p~rIE~fDiSh~~G~----~~V~smVvf~~-G~~~k~~YR~f~i~~~--~~~dD~--------------~~m~Evl~RR 418 (567)
T PRK14667 360 LPERIEGFDISHFYGE----FTVGSCVVWED-GSMNKKEYRRYKIKTV--DGIDDY--------------ASLREVLTRR 418 (567)
T ss_pred CCCeEEEEECcccCCC----cceEEEEEEEC-CccChhhCCeeecCCC--CCCCHH--------------HHHHHHHHHH
Confidence 5678999999998642 36788887666 33221 1112223221 113454 4556666554
Q ss_pred HHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCC
Q 003630 601 RRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 664 (806)
Q Consensus 601 ~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 664 (806)
+.+. +.+|+=||| || +-||+..+ .+++.+++- +|.+|-..|+. .++|.
T Consensus 419 ~~r~~~~~~~~PDLili--DG-GkgQl~aa--------~~~l~~lg~----~i~v~glaK~~-e~i~~ 470 (567)
T PRK14667 419 ARRYKEGENPMPDLWLI--DG-GKGQLSVG--------IEVRDRLGL----NIKVFSLAKKE-EILYT 470 (567)
T ss_pred hhhccccCCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecC-cEEEc
Confidence 4331 248987776 65 45776644 456666532 46678888865 44554
No 24
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=43.34 E-value=2.2e+02 Score=33.96 Aligned_cols=98 Identities=23% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCc--eeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVA--KYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIA 599 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~--~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 599 (806)
.|.-|-++|+||-.. .-.|+|+|--.| ..+. .|. .+.+... +-.+|+ .+|.|.|..
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~-G~~~k~~YR-~f~i~~~--~~~dDy--------------a~m~Evl~R 439 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFED-GGPDKSEYR-RYNIKGV--TGGDDY--------------AAMREVLTR 439 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 567899999999863 236788877666 3221 122 1222221 112443 455566554
Q ss_pred HHHh----cCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 003630 600 FRRS----TNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 656 (806)
Q Consensus 600 f~~~----~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K 656 (806)
.++. .+.+|+=||| || +-||+..+ .+++.+++- .|.+|-..|
T Consensus 440 R~~~~~~~~~~~PDLili--DG-GkgQl~~a--------~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 440 RYSRLLKEFGPLPDLILI--DG-GKGQLNAA--------KEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHCCC----CCcEEEEEe
Confidence 4433 2358987776 66 56787644 456665532 356666667
No 25
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=38.02 E-value=2.5e+02 Score=33.80 Aligned_cols=100 Identities=20% Similarity=0.152 Sum_probs=56.1
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
.|.-|-++|+||-+.. -.++|+|--.| ..+.+ .+=.+.+-.. + .+|+ .+|.|.|...
T Consensus 471 ~p~rIE~~DiSh~~G~----~~v~~mVvf~~-G~p~k~~YR~f~i~~~--~-~dD~--------------~~m~ev~~RR 528 (694)
T PRK14666 471 PPHRIEAVDVSHTGGR----NTRVGMVVFED-GKPARDAYRTYAFEDG--E-GDDY--------------GTLAAWAGRR 528 (694)
T ss_pred CCCEEEEEECcccCCc----CceEEEEEEEC-CccChhhCCeeeCCCC--C-CChH--------------HHHHHHHHHH
Confidence 5678999999998742 35777777666 33222 1111222221 1 1454 4445555444
Q ss_pred HHhcCCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEee
Q 003630 601 RRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQK 656 (806)
Q Consensus 601 ~~~~~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~K 656 (806)
.+....+|+-||| || +.||+..+ .+++.+++- ...+.+|-..|
T Consensus 529 ~~~~~~~PDLili--DG-G~gQl~aa--------~~~l~e~g~--~~~~~v~~laK 571 (694)
T PRK14666 529 VESGPPWPDLLLV--DG-GRGQLAAV--------VRALEEAGM--GGLFAVASIAK 571 (694)
T ss_pred hcCCCCCCCEEEE--cC-CHHHHHHH--------HHHHHHcCC--CCCccEEEEec
Confidence 4332358987776 65 46777644 466666643 11367777777
No 26
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=37.51 E-value=2.8e+02 Score=32.36 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
.|.-|-|+|+||-+.. -.|+|+|.-.| ..+.+ .+=.+.+.. .+-.+|+ .+|.|.|...
T Consensus 365 ~p~rIE~fDiSh~~G~----~~V~smVvf~~-G~p~k~~YR~f~Ik~--~~~~dDy--------------~~m~Evl~RR 423 (519)
T PRK12306 365 PPNVIECFDISHLSGT----STVGSMVQFRN-GKPDKKNYRRFKIKT--VEGIDDF--------------ASIAEVVRRR 423 (519)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEeC-CccChhhcCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 4567999999998642 36788887666 32221 111122221 1112444 4455555444
Q ss_pred HHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCC
Q 003630 601 RRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 664 (806)
Q Consensus 601 ~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 664 (806)
+... +.+|+=||| || +-||+..+ .+++.+++ . .|.+|-..|+. .++|.
T Consensus 424 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~~l~elg--~--~i~viglaK~~-e~i~~ 475 (519)
T PRK12306 424 YSRLLEENSELPDLIVI--DG-GKGQLSSA--------FKELRKLG--L--KIPLISIAKRE-EEIYV 475 (519)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--C--CCcEEEEEcCc-eEEEe
Confidence 4331 148987776 65 45777644 46666653 2 47788888876 44544
No 27
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=36.96 E-value=3e+02 Score=32.95 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=59.0
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
.|.-|-++|+||-... -.|+|+|--.| ..+.+ .+=.+.+-. .+-.+|+ .+|.|.|...
T Consensus 395 ~p~rIE~fDiSh~~G~----~~V~smVvf~~-G~~~k~~YRkf~Ik~--~~~~DDy--------------a~M~Evl~RR 453 (624)
T PRK14669 395 LPSRIECFDISHIQGA----ETVASMVVWED-GKMKKSDYRKFIIKT--VVGVDDF--------------ASMREVVTRR 453 (624)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEEC-CccChhhCCeeecCC--CCCCCHH--------------HHHHHHHHHH
Confidence 4678999999998642 36777777666 32211 111122221 1112444 4445555444
Q ss_pred HHh---cC-CCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCC
Q 003630 601 RRS---TN-FKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFP 664 (806)
Q Consensus 601 ~~~---~~-~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~ 664 (806)
+.. .+ .+|+=||| || +-||+..+ .+++.+++- . .|.+|-..|+... +|-
T Consensus 454 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~elgl--~-~i~vigLaK~~e~-i~~ 506 (624)
T PRK14669 454 YSRLQEEKQPMPGLVLI--DG-GLGQLHAA--------AEALEAIGI--T-DQPLASIAKREEI-IYV 506 (624)
T ss_pred hhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC--C-CCcEEEEecCCeE-EEC
Confidence 433 12 48987776 66 56777644 466666632 1 3667888887644 544
No 28
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=36.83 E-value=3.5e+02 Score=32.04 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCce-eEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAK-YRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAF 600 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~~-y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~f 600 (806)
-|.-|-++|+||-... -.|+++|.-.| ..+.+ .+=.+.+........+|+ .+|.|.|...
T Consensus 357 ~p~rIE~fDiSh~~G~----~~V~smVvf~~-G~~~k~~YRkf~ik~~~~~~~DD~--------------a~M~Evl~RR 417 (574)
T PRK14670 357 LPKTIEGFDIAHLNGQ----KTVASLVTFKM-GKPFKDGYRVYKINSLLKGEIDDF--------------KAIKEVISRR 417 (574)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEEC-CccChhhCCeeeccCCCCCCCCHH--------------HHHHHHHHHH
Confidence 5678999999998742 36788887666 33221 111222221100002444 4455555544
Q ss_pred HHh--c--CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccc
Q 003630 601 RRS--T--NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRT 660 (806)
Q Consensus 601 ~~~--~--~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~ 660 (806)
++. . +.+|+=||| || +.||+..+ .+++.+++ ...+|.+|-..|+--+
T Consensus 418 ~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg--~~~~i~v~gLaK~~e~ 468 (574)
T PRK14670 418 YSKLINEQLELPNLILI--DG-GKGQLNAA--------YSILKGLK--IENKVKVCALAKKEET 468 (574)
T ss_pred HhhcccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcC--CCCCceEEEEecCCeE
Confidence 433 1 258987776 66 46777644 46666653 2223778888886533
No 29
>PRK00766 hypothetical protein; Provisional
Probab=31.10 E-value=81 Score=31.60 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=28.3
Q ss_pred CCCChhHHHHHHHHhhhccccccCCcccCChhhhHHHHHHHH
Q 003630 721 NRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRA 762 (806)
Q Consensus 721 ~~~~~d~lq~lt~~Lc~~y~r~t~sVsip~P~yyA~~~a~R~ 762 (806)
.+.+.++-.+++-.+|-- =++|.|+..||++|...
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~~ 186 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASGV 186 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHHh
Confidence 467889999999888853 37999999999997543
No 30
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=30.57 E-value=3.6e+02 Score=32.31 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCeEEEeEeeecCCCCCCCCCceeEEEEeecCCCCc--eeEEEEEEcCCCchhhhchhhhcCCCCCccchhhHHHHHHHH
Q 003630 522 RPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVA--KYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIA 599 (806)
Q Consensus 522 ~~tmiiG~DV~H~~~~~~~~pSi~a~v~S~d~~~~~--~y~~~~~~q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~ 599 (806)
.|.-|-++|+||-... -.|+++|--.| ..+. .|. .+.+... +-.+|+ .+|.|.|..
T Consensus 414 ~p~rIE~fDiSh~~G~----~~V~smVvf~~-G~~~k~~YR-~f~ik~~--~~~dDy--------------~~m~Evl~R 471 (621)
T PRK14671 414 LPRRIECFDNSHFQGT----DYVSSMVCFVD-GKPKKSDYR-KFKLRSF--EGSDDY--------------AAMREVVTR 471 (621)
T ss_pred CCCEEEEEECCccCCC----CceEEEEEEEC-CccChhhCC-eeecCCC--CCCCHH--------------HHHHHHHHH
Confidence 4678999999998742 36778777666 3222 222 1222211 112444 445566555
Q ss_pred HHHhc----CCCCceEEEEecCCChhhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeeccccccCCC
Q 003630 600 FRRST----NFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPA 665 (806)
Q Consensus 600 f~~~~----~~~P~~IiiyRDGVsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~ 665 (806)
.+..- +.+|+-||| || +.||+..+ .+++.+++- .|.+|-..||. .++|..
T Consensus 472 R~~r~~~~~~~~PDLilI--DG-GkgQl~aa--------~~vl~~lg~----~i~viglaK~~-e~i~~~ 525 (621)
T PRK14671 472 RYSGSLAEELPLPDLIVI--DG-GKGQVNSA--------WKVLQELGL----SVPVIGLAKRL-EEIFTP 525 (621)
T ss_pred HhhccccccCCCCCEEEE--eC-CHHHHHHH--------HHHHHHcCC----CCcEEEEEecc-cEEEeC
Confidence 44331 258987777 65 45776644 466666532 46788888844 445543
No 31
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=27.17 E-value=41 Score=30.86 Aligned_cols=31 Identities=19% Similarity=0.033 Sum_probs=21.9
Q ss_pred hccccccCCcccCChhhhHHHHHHHHhhhcc
Q 003630 737 YTYARCTRSVSIVPPAYYAYLAAFRARYYIE 767 (806)
Q Consensus 737 ~~y~r~t~sVsip~P~yyA~~~a~R~r~~~~ 767 (806)
|.|+-.-.+-=+|.|+++||++++|....-.
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~ 42 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVRK 42 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHHH
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHHh
Confidence 3444444566699999999999998866544
No 32
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.30 E-value=70 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHhcCCCCceEE
Q 003630 590 GGMIRELLIAFRRSTNFKPHRII 612 (806)
Q Consensus 590 ~~~~~~~L~~f~~~~~~~P~~Ii 612 (806)
.+|. ..+..|.+.||++|..|-
T Consensus 11 ~d~a-~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 11 LDMA-SRVNNFYESNGRLPNYVS 32 (33)
T ss_pred HHHH-HHHHHHHHHcCCCCCeee
Confidence 4555 478899999999998764
Done!