Query 003630
Match_columns 806
No_of_seqs 182 out of 1092
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 17:53:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003630.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1680-1684//hhsearch_pdb/003630hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 1.0 1 1 1408.6 67.7 772 2-806 49-861 (861)
2 4f1n_A Kpago; argonaute, RNAI, 1.0 1 1 1274.0 52.5 769 7-806 67-1046(1046)
3 1yvu_A Hypothetical protein AQ 1.0 1 1 784.1 35.2 621 8-768 6-695 (706)
4 2yhb_A QDE-2, post-transcripti 1.0 1 1 749.1 19.0 384 392-806 2-437 (437)
5 1u04_A Argonaute, hypothetical 1.0 1 1 693.4 34.8 620 4-768 18-758 (771)
6 3ho1_A Argonaute; argonaute, p 1.0 1 1 618.3 41.2 596 5-763 22-668 (685)
7 2yha_A Post-transcriptional ge 1.0 1 1 600.9 20.8 335 392-806 2-388 (388)
8 2w42_A PIWI, putative uncharac 1.0 1 1 409.8 7.0 336 365-767 4-406 (427)
9 1vyn_A Argonaute2; nucleic aci 1.0 1 1 218.0 9.2 135 188-324 2-143 (143)
10 1r6z_P Chimera of maltose-bind 1.0 1 1 201.3 8.1 128 181-310 375-509 (509)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=1.00 E-value=1 Score=1408.64 Aligned_cols=772 Identities=41% Similarity=0.681 Sum_probs=665.2
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 32388866998989726888747799999999998520267997504527750443388899972499993899999999
Q 003630 2 VQLAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDSDPRPSS 81 (806)
Q Consensus 2 ~~~~~~~~y~Y~V~i~p~~~~k~~~r~~~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~ 81 (806)
+++|++.+|||||+|+|++++++++|+++++|++.++.+.|++..+||||+++|||+++||.+....++.+..+.+
T Consensus 49 v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~~~~~~~~~v~~~~~---- 124 (861)
T 4f3t_A 49 MDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGE---- 124 (861)
T ss_dssp EECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSCSSCEEEEECCC-------
T ss_pred EECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCEEEEEECCCC----
T ss_conf 8778886265037847876767799999999998755665068607875863178887678778636999863788----
Q ss_pred CCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 98998886799999954204658799985358999974689999999713445884000233447999995225994899
Q 003630 82 STRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQLGDGVEY 161 (806)
Q Consensus 82 ~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~~~~~~~~~~~iq~Lnivlr~~~~~~~~~~gr~ff~~~~~~~~~l~~G~e~ 161 (806)
.++++|+|+|++++++++.+|.+|+.|.....+.+++|+||||||+.+++++..+||+||+++.+...++++|+|+
T Consensus 125 ----~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~ 200 (861)
T 4f3t_A 125 ----GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREV 200 (861)
T ss_dssp --------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHHHHHHSEEETTEEECCC---CCEEETTEEE
T ss_pred ----CCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCEEE
T ss_conf ----9872799999990243889999996499878828999999999976221246426877558987750116898799
Q ss_pred EEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHCCCEEEEEECC-CCCE
Q ss_conf 9857887863066247755335222005761999999996602-----999998899999988259599994259-8630
Q 003630 162 WRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNL-----SRPLSDQVRLKVKKELKGIKVVLTHLE-TSNS 235 (806)
Q Consensus 162 ~~G~~~Svr~~~~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~-----~~~l~~~~~~~i~~~Lkgl~V~~~~~~-~~r~ 235 (806)
|+||++|||+++++++||+|+++++|+++++|+|+|.++++.. .+.+.+.++.+++++|+|++|.++|.+ ++|+
T Consensus 201 w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~ 280 (861)
T 4f3t_A 201 WFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRK 280 (861)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCE
T ss_pred EECEEEEEEECCCCCEEEECCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCE
T ss_conf 84506789851785278541431027607709999999863455022035657789999999857938998303778865
Q ss_pred EEEECCCCCCCCCCEEE--CCCCC--EEEHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCCH
Q ss_conf 89932357788875574--59995--011999999973974458999705339999871101222352168534678999
Q 003630 236 HRITGISSQPMSQLAFT--DGSAT--SMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNE 311 (806)
Q Consensus 236 ~~I~~i~~~~a~~~~F~--~~~g~--~iSv~~Yf~~~Y~i~L~~p~lP~v~~~~~~~~~ylP~Elc~i~~~Qr~~~kL~~ 311 (806)
|+|.||++.++.+.+|. .++|+ +|||+|||+++|||+|+||+||||++|++++++|||||||.|+||||++++|++
T Consensus 281 yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~ 360 (861)
T 4f3t_A 281 YRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTD 360 (861)
T ss_dssp EEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCH
T ss_pred EEEEECCCCCCCCCEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCH
T ss_conf 99953788998776787652789841688899998753952479997638834888875256566894078445566898
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999987207992789999999998447887613343022898164316543772798232125886322389987433
Q 003630 312 RQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNPGFGQWN 391 (806)
Q Consensus 312 ~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~g~W~ 391 (806)
+|+++||++++..|.+|.+.|.++++.++++.+++|+ +|||+|+++|++|+||+||||+|.|+++.+ ....|.+|+|+
T Consensus 361 ~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~-~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~-~~~~~~~g~W~ 438 (861)
T 4f3t_A 361 NQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVR-EFGIMVKDEMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWD 438 (861)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHH-HTTCEECSSCEEEEEEECCCCCEECCSSSC-CEECCBTTBCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH-HCCCEEECCEEEEEEEEECCCEEEECCCCC-CCCCCCCCCEE
T ss_conf 9999999987549799999999999871689756899-779788387568977982586488568764-33378878513
Q ss_pred CCCCEEECCCCCCCEEEEEECCC--CCCCCHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 24812212753341089861788--8977089999999999750790317999251369993689999999999973169
Q 003630 392 MINKKMFNGGRVEVWTCVNFSTR--LNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQG 469 (806)
Q Consensus 392 ~~~~~f~~~~~i~~W~vv~~~~~--~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 469 (806)
+++++|+.++++++|++++|.+. .+++.+++|++.|.+.|+.+||.+..+|.+.....+.+.++..++.+.+..
T Consensus 439 ~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~---- 514 (861)
T 4f3t_A 439 MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTY---- 514 (861)
T ss_dssp CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEECCSSSSHHHHHHHHHHHS----
T ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHC----
T ss_conf 5698870275444059998457544458999999999999985078654799737772584578999999998526----
Q ss_pred CCCEEEEEECCCCCCCCC------------CCCCCC------CCC---------CCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 992699998169988887------------743454------452---------10103850035311101477754799
Q 003630 470 KQLQLLIIILPDVSGSYV------------PRFLVK------IDR---------FASLVGGRNTVLVDAVQKRIPLVTDR 522 (806)
Q Consensus 470 ~~~~lv~~il~~~~~~Y~------------~~~~~k------~~~---------l~~KlGG~n~~l~~~~~~~~p~~~~~ 522 (806)
.++|||+||+|++.+.|. ++||.. .+. +|+||||+||.+.+. ..|.+...
T Consensus 515 ~~~qlvl~Ilp~~~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~ 591 (861)
T 4f3t_A 515 AGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQ 591 (861)
T ss_dssp TTCCEEEEEESSSCTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEECCCC---CCCCCCCC
T ss_conf 898389999589842899999974306784228997212255567899999999988619833044665---46534689
Q ss_pred CEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 93999674306899999998466899841689873027899970787002220120017987763121289999999998
Q 003630 523 PTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRR 602 (806)
Q Consensus 523 ~tmiiG~DV~Hp~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~ 602 (806)
+|||||+||+||++++...||++|+|||+| ..+++|.+.+++|.+++|+|++| ++|+.++|..|++
T Consensus 592 ~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l-------------~~~~~~~L~~~~~ 657 (861)
T 4f3t_A 592 PVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYK 657 (861)
T ss_dssp CEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTH-------------HHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCHHHHH-------------HHHHHHHHHHHHH
T ss_conf 658998772146888778865999999847-98565878999758995589989-------------9999999999999
Q ss_pred HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52999944899834889356999999999999999996217999989999995235443477988988988998999761
Q 003630 603 STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPG 682 (806)
Q Consensus 603 ~~~~~P~~IiiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pG 682 (806)
.||.+|++|||||||||||||++|+++|+++|++||.++..+|+|+||||||+||||+|||+.+.++ ..++.+|||||
T Consensus 658 ~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~--~~~~~~N~~pG 735 (861)
T 4f3t_A 658 STRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNE--RVGKSGNIPAG 735 (861)
T ss_dssp HHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGG--CBTTTTBCCTT
T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCC--CCCCCCCCCCC
T ss_conf 8289984599992687768899999999999999999854477985799999725663562258753--33446898984
Q ss_pred EEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 26415556898661897213798874478736997248878966799999995402453368854477233399999998
Q 003630 683 TVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRA 762 (806)
Q Consensus 683 TvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lty~Lc~~y~~~t~~VsiP~P~yyA~~~a~R~ 762 (806)
||||++||+|.+|||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++||+||||||||++|+||
T Consensus 736 TvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~~~t~~vsvpaP~yYA~~~a~R~ 815 (861)
T 4f3t_A 736 TTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRA 815 (861)
T ss_dssp EEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCTTSSBCCSSCHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 01157502588777999888514136667668998379999999999999998655210478887762889999999999
Q ss_pred HHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 64102346--899877688884212123899821210167890109
Q 003630 763 RYYIEDET--SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 763 r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 806 (806)
|+|+.+.. ++.+|++|+.++............+|++++++|||+
T Consensus 816 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 816 RYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp HHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEC
T ss_conf 9751101356776654468876655355544534316551583039
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=1.00 E-value=1 Score=1274.00 Aligned_cols=769 Identities=24% Similarity=0.360 Sum_probs=614.9
Q ss_pred CCEEEEEEEECCCCC--------------CHHHHHHHHHHHHHHHH-HCCCCCCCEEEECCCEEEECCCCC---CCCCEE
Q ss_conf 866998989726888--------------74779999999999852-026799750452775044338889---997249
Q 003630 7 KDIHHYDVSITPWVT--------------SKKINRQIISQLINLYR-LTDLGGRIPAYDGMKSIYTAGPLP---FQSKEF 68 (806)
Q Consensus 7 ~~~y~Y~V~i~p~~~--------------~k~~~r~~~~~l~~~~~-~~~~~~~~~~yDG~~~lys~~~L~---~~~~~~ 68 (806)
..+|+|+|+|.|+.. +++.+++++..|++... ...+.. .+||||+++|||+++|| .....+
T Consensus 67 ~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~ii~~ll~e~~~~~~~~~-~ia~d~~~~L~s~~~L~~~~l~~~~~ 145 (1046)
T 4f1n_A 67 AFIFTYHIDFKPQQKGPPRRGKPVPPQELSKPKKYELIEALLDEDEILYKYRD-RIAFNGEDTIYSHVPLEEFTLFDGCW 145 (1046)
T ss_dssp CEEEEEEEEEC-----------------CCHHHHHHHHHHHHHSCTTTGGGTT-SEEECSSSEEEESSCGGGSTTCTTCC
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCC-CEEECCCCCEEECCCCCCCCCCCCCE
T ss_conf 15899889975645665444566765322123799999999972613564288-60464722168787677653577766
Q ss_pred EEECC-----CCCCCCC--------CCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCC-----CHHHHHHHHHHHC
Q ss_conf 99938-----9999999--------9989988867999999542046587999853589999-----7468999999971
Q 003630 69 IIELP-----DSDPRPS--------SSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEA-----PYDVIQVLGVILS 130 (806)
Q Consensus 69 ~v~~~-----~~~~~~~--------~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~~~~~~~-----~~~~iq~Lnivlr 130 (806)
.|.+. ++.++++ ...+..++++|+|+|+++++|++.+|.+|+.|...+. +.+++++||+||+
T Consensus 146 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~ 225 (1046)
T 4f1n_A 146 EVSNKQKKKVVPGMGAPSNKASLQKKIDPELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLG 225 (1046)
T ss_dssp C-------------------------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98655334466776654433222345555566845999998710517999999972898554433341678999999975
Q ss_pred CCCCCC---CCEECC-CCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCEEEEEEECCCCCCCCC---------------
Q ss_conf 344588---400023-3447999-99522599489998578878630662477553352220057---------------
Q 003630 131 AASSEK---HTVVGR-SFFPTDH-GPIGQLGDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEP--------------- 190 (806)
Q Consensus 131 ~~~~~~---~~~~gr-~ff~~~~-~~~~~l~~G~e~~~G~~~Svr~~~~~l~LniD~~~~~F~~~--------------- 190 (806)
+.+... ..++|+ +||..+. +...+|++|+|+|+|||+|||++.++|+||||+++++|+++
T Consensus 226 ~~~~~~~~~i~~vg~nkFF~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~ 305 (1046)
T 4f1n_A 226 AKFMSTDDLIFQVQGNKFFIFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEK 305 (1046)
T ss_dssp HHHHCSSSCEEEETTTEEEECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTT
T ss_pred HHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 56553589648757843046798775103788179997676667851894089972551117846666765310001356
Q ss_pred --CCHHHHHHHHHH-HC-----------CCCCCHHHH-------HHHHHHHCCCEEEEEECC-------------CCCEE
Q ss_conf --619999999966-02-----------999998899-------999988259599994259-------------86308
Q 003630 191 --ILVTEFVQNYCR-NL-----------SRPLSDQVR-------LKVKKELKGIKVVLTHLE-------------TSNSH 236 (806)
Q Consensus 191 --~~l~d~~~~~~~-~~-----------~~~l~~~~~-------~~i~~~Lkgl~V~~~~~~-------------~~r~~ 236 (806)
++|+|+|.++++ .. .+.++..++ .+++++||||+|.++|.+ ..+.+
T Consensus 306 ~p~~lid~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k 385 (1046)
T 4f1n_A 306 EQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSK 385 (1046)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCE
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCE
T ss_conf 88609999999863333322222232235787556654456788999998489789998667544556652443466646
Q ss_pred EEECCCCCCCCCCEEECCCC--------------CEEEHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCC
Q ss_conf 99323577888755745999--------------5011999999973974458999705339999871101222352168
Q 003630 237 RITGISSQPMSQLAFTDGSA--------------TSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAG 302 (806)
Q Consensus 237 ~I~~i~~~~a~~~~F~~~~g--------------~~iSv~~Yf~~~Y~i~L~~p~lP~v~~~~~~~~~ylP~Elc~i~~~ 302 (806)
+|.||+..++.+.+|..++| +++||+|||+++|||+|+||+||||++|++ .+|||||||.|+||
T Consensus 386 ~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYni~LkyP~LPcV~VG~~--~~ylPmElC~I~pG 463 (1046)
T 4f1n_A 386 GIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGK--NDVVPPECLTIVPG 463 (1046)
T ss_dssp ECCEECSSCSSSCC-----------------------CHHHHHHHHSCCCCSCTTSCCEECSTT--TCEECGGGCCBCTT
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCC--CCCCCCCEEEECCC
T ss_conf 9863468997731996168754445666677675278899999987394047999877997897--74213104796689
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEECCC
Q ss_conf 53467899999999987207992789999999998-----4478876133430228981643165437727982321258
Q 003630 303 QRYTQRLNERQVTALLQATCQRPREREDYIRMMAR-----ANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHET 377 (806)
Q Consensus 303 Qr~~~kL~~~q~~~lik~~~~~P~~R~~~i~~~~~-----~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~ 377 (806)
|+|+++|++ +++||++||++|.+|.+.|.+... .+..+.+++|+ +|| +|+.+|++|+|||||||.|.|+++
T Consensus 464 Qr~~kKL~~--ts~MIKfAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~-~FG-~I~~~m~~V~gRVLppP~L~Yg~~ 539 (1046)
T 4f1n_A 464 QKLKGQIFD--TKTYIDFSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESS-APH-NSAYQFMRVPSRILDAPVVQFKES 539 (1046)
T ss_dssp CBCCSCCCC--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTSCCC----------CCSSSCCEEEEEECCCCCEECSSC
T ss_pred CCCCCCCCC--HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HCC-CCCCCEEEEEEEECCCCEEEECCC
T ss_conf 624512351--7899998756949999999999887541024666557678-628-756850367788748975761687
Q ss_pred CCC-------CCCCCCCCCCCCCCCEEECCCC-CCCEEEEEECCC-C-----CCCCHHHHHHHHHHHHHCCCEECCCC--
Q ss_conf 863-------2238998743324812212753-341089861788-8-----97708999999999975079031799--
Q 003630 378 GQE-------ASVNPGFGQWNMINKKMFNGGR-VEVWTCVNFSTR-L-----NRDVPFQFCQGLVDMCNSKGMVFNPQ-- 441 (806)
Q Consensus 378 ~~~-------~~~~p~~g~W~~~~~~f~~~~~-i~~W~vv~~~~~-~-----~~~~~~~f~~~L~~~~~~~Gi~i~~~-- 441 (806)
... ....|.+|.|||++++|+.++. +.+|+++++... . +.+.+..|++.|.+.|+.+||.+..+
T Consensus 540 ~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~ 619 (1046)
T 4f1n_A 540 TFEYKDKSYGTKHEESKGNWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGK 619 (1046)
T ss_dssp EECCCCCCSSSSGGGGTTBCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 54555565434457667852688887713786664079999727876665423899999999999999866985478778
Q ss_pred CEEE---------CCCCC--------------------------HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CCC
Q ss_conf 9251---------36999--------------------------36899999999999731699926999981699-888
Q 003630 442 PVIP---------ISSSN--------------------------PNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS 485 (806)
Q Consensus 442 ~~~~---------~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~~~~lv~~il~~~-~~~ 485 (806)
|.+. +.... ..+.+..|..+++.+ .+++||+||+|++ +.+
T Consensus 620 p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~lvl~Ilp~~~~~~ 695 (1046)
T 4f1n_A 620 PILINQFGPPIKKFQGGGRGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI----PSNTYILYVLRRGNDSA 695 (1046)
T ss_dssp CEEEESCCSCBC----------------------------CCCBCCTTHHHHHHHHHTC----CTTEEEEEEESSSCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCH
T ss_conf 74121345543111233433323333333333333444432111231799999999745----89978999966888716
Q ss_pred -CC------------CCCCC------CCCC---------CCCCCCCCEEEECCCCCCCCCCCC----CCCEEEEEEEEEC
Q ss_conf -87------------74345------4452---------101038500353111014777547----9993999674306
Q 003630 486 -YV------------PRFLV------KIDR---------FASLVGGRNTVLVDAVQKRIPLVT----DRPTIIFGADVTH 533 (806)
Q Consensus 486 -Y~------------~~~~~------k~~~---------l~~KlGG~n~~l~~~~~~~~p~~~----~~~tmiiG~DV~H 533 (806)
|. ++||. |.+. +|+||||+||.|+.. .++++. ..+|||||+||+|
T Consensus 696 ~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH 772 (1046)
T 4f1n_A 696 VYDRLKYITDLKFGALNSCVVWDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTH 772 (1046)
T ss_dssp HHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEEC
T ss_pred HHHHHHHHHHCCCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCC---CCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 899999976135781448984235135427899999999998609851143665---44323444567734998531111
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCC-CCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCEE
Q ss_conf 89999999846689984168987302789997078-70022201200179877631212899999999985-29999448
Q 003630 534 PQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAP-HEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRS-TNFKPHRI 611 (806)
Q Consensus 534 p~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~-~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~-~~~~P~~I 611 (806)
++++. .+||+|+|||+| ..+++|.+.+++|.+ ++|+|++| ++|+.++|..|++. +|.+|++|
T Consensus 773 ~p~~~--~~SiaavVaS~d-~~~t~y~s~~~~Q~~~~~Eii~~L-------------~~~~~~~L~~y~~~n~~~lP~~I 836 (1046)
T 4f1n_A 773 YPEKD--QNSIASLVGSYD-DKFTQFPGDYMLQDGPGEEIITNV-------------GSLMLNRLKIYQKHNNGKLPTKI 836 (1046)
T ss_dssp CSSTT--CEEEEEEEECCS-SSCCCCCEEEEEEEEETCCSCTTG-------------GGGHHHHHHHHHHTTTTCCCSSE
T ss_pred CCCCC--CCEEEEEEEEEC-CCCCEEEEEEEEECCCCCCHHHHH-------------HHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 79899--872669999987-985858359998458872489889-------------99999999999986379998579
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCEEEEEEEECCCCCCCCCCCCCCCCC------CCCCCC
Q ss_conf 9983488935699999999999999999621------7999989999995235443477988988988------998999
Q 003630 612 IFYRDGVGERQFSQVLLHEMNAIRQACASLE------EGYAPPVTFVVVQKRCRTRLFPAEHNRCDLT------DRSGNI 679 (806)
Q Consensus 612 iiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~------~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~------~~~~N~ 679 (806)
||||||||||||++|+++|+++|++||.++. .+|.|+||||||+||||+|||+.+.++.+.. ++.+|+
T Consensus 837 IiYRDGVSEGQf~~Vl~~Ev~~Ik~a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~ 916 (1046)
T 4f1n_A 837 MYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNV 916 (1046)
T ss_dssp EEEEESCCGGGHHHHHHTHHHHHHHHHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99806876577899999999999999998543003455779877999996576423511455543333443234566799
Q ss_pred CCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 76126415556898661897213798874478736997248878966799999995402453368854477233399999
Q 003630 680 LPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAA 759 (806)
Q Consensus 680 ~pGTvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~~~~~d~lq~lty~Lc~~y~~~t~~VsiP~P~yyA~~~a 759 (806)
+||||||++||+|.+|||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+|||++|||||||||||++|
T Consensus 917 ~pGTVVD~~It~p~~~DFyL~Sh~~~qGTarPthY~VL~De~~~~~d~lQ~LTy~LC~~y~r~t~sVsvPaP~yYAhlla 996 (1046)
T 4f1n_A 917 MPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYWCLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLC 996 (1046)
T ss_dssp CTTEEECSSSSCSSBEEEEEECSCCCSSSCCCEEEEEEEESSCCCHHHHHHHHHHTTSCCTTSSBCCSSCHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99728646645667412899703347776657379999679999989999999998655335178862557899999999
Q ss_pred HHHHHHCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 99864102346----899877688884212123899821210167890109
Q 003630 760 FRARYYIEDET----SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 760 ~R~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 806 (806)
+|||+|+++.. +++++++++..+ ......+.++.+|++++++||||
T Consensus 997 ~R~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mf~i 1046 (1046)
T 4f1n_A 997 TRATCFFKAGFELNMAQAPKEKGSKDQ-PTVSKNVLLPQVNDNIKSVMYYI 1046 (1046)
T ss_dssp HHHHHHHHHTSHHHHHCC-----------CCCHHHHSCCCCGGGTTSCTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCEEEC
T ss_conf 999999986412022224556677665-55676654511335540152359
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=1.00 E-value=1 Score=784.15 Aligned_cols=621 Identities=13% Similarity=0.159 Sum_probs=466.8
Q ss_pred CEEEEEEEECCC------------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCCCCEEEEECCCC
Q ss_conf 669989897268------------88747799999999998520267997504527750443388899972499993899
Q 003630 8 DIHHYDVSITPW------------VTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQSKEFIIELPDS 75 (806)
Q Consensus 8 ~~y~Y~V~i~p~------------~~~k~~~r~~~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~~~~~ 75 (806)
-+..|.+++-|. +...+++...| .++-+ + + .+.|....-.|+..+...+..- ....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~---~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~- 74 (706)
T 1yvu_A 6 LLNLYRIEYRPKDTTFTVFKPTHEIQKEKLNKVRW-RVFLQ---T---G-LPTFRREDEFWCAGKVEKDTLY--LTLSN- 74 (706)
T ss_dssp EESEEEEEECCSSCEEBCCEESSCCCHHHHHHHHH-HHHHH---H---C-SCEEEETTEEEESSCCTTCCCE--EEECS-
T ss_pred HHHHHEEEECCCCCEEEEECCHHHHHHHHHHHEEE-EEEEE---C---C-CCCCCCCCCCEECCCCCCCEEE--EECCC-
T ss_conf 53544255136773367634507887876412014-76510---1---7-8652015310343520132489--98179-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 99999998998886799999954204658799985358999974689999999713445884000233447999995225
Q 003630 76 DPRPSSSTRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAASSEKHTVVGRSFFPTDHGPIGQL 155 (806)
Q Consensus 76 ~~~~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~~~~~~~~~~~iq~Lnivlr~~~~~~~~~~gr~ff~~~~~~~~~l 155 (806)
+. +|+|++++++... ...++.+++|+++.+|+.. .+++.++||+||++. ....+
T Consensus 75 ------------~~--~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~l~~~~igr~~~~~~--~~~~i 128 (706)
T 1yvu_A 75 ------------GE--IVELKRVGEEEFR---------GFQNERECQELFRDFLTKT-KVKDKFISDFYKKFR--DKITV 128 (706)
T ss_dssp ------------SS--CEEEEECCCEECC---------CCSCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--HHHEE
T ss_pred ------------CC--EEEEEEEEEEECC---------CCCCCHHHHHHHHHHHHHC-CCHHHHHCCCCCCCC--CCCCC
T ss_conf ------------97--8999999886156---------7899989999999999975-774755172445833--56205
Q ss_pred ---CCCEEEEEEEEEEEEEEC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf ---994899985788786306-6247755335222005761999999996602999998899999988259599994259
Q 003630 156 ---GDGVEYWRGYFQSLRLTQ-MGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLE 231 (806)
Q Consensus 156 ---~~G~e~~~G~~~Svr~~~-~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~~~~l~~~~~~~i~~~Lkgl~V~~~~~~ 231 (806)
..++|+|+||.+||+..+ ++++||+|++|+ |.+.++|+|+|.+ ... .. ..+..+|
T Consensus 129 ~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~-~~~----~~-------------~~~~~~y-- 187 (706)
T 1yvu_A 129 QGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFR-IQPFETLQTLLER-NDF----NP-------------KRIRVKP-- 187 (706)
T ss_dssp ECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEE-EEESSCHHHHHHH-CCC----CC-------------TTCEEEE--
T ss_pred CCCCCCEEECCCEEEEEEECCCCCEEEEEEEEEE-ECCCCHHHHHHHH-HHH----CC-------------HHHHHHC--
T ss_conf 6778767981686889885267875999973404-5566539999997-230----46-------------5688643--
Q ss_pred CCCEE--EEECC-CCCCCCCCEEECCCCCEEEHHHHHHHHCCCC--------CCCCCCCEEECCCCCC-CCEECCCCEEE
Q ss_conf 86308--99323-5778887557459995011999999973974--------4589997053399998-71101222352
Q 003630 232 TSNSH--RITGI-SSQPMSQLAFTDGSATSMSVIQYFRERYNIA--------LQFTSLPALLAGSEAR-PIYLPMELSRI 299 (806)
Q Consensus 232 ~~r~~--~I~~i-~~~~a~~~~F~~~~g~~iSv~~Yf~~~Y~i~--------L~~p~lP~v~~~~~~~-~~ylP~Elc~i 299 (806)
++++| +|++| +|...+..+|. +|.++| ||+++|++. .+.+.+|++..+++.. +.++++ +|++
T Consensus 188 ~n~ty~~riddi~~~~~~P~~~f~--~g~~iS---Yyk~~~~~~q~ll~~r~~~~~~~~~~v~~~~~~p~~lL~p-lc~~ 261 (706)
T 1yvu_A 188 IGIDFVGRVQDVFKAKEKGEEFFR--LCMERS---THKSSKKAWEELLKNRELREKAFLVVLEKGYTYPATILKP-VLTY 261 (706)
T ss_dssp TTCCCCEEEEEEEESTTSCHHHHH--HHHHTC---SSHHHHHHHHHHHHCHHHHHHCEEEEETTSCEEEGGGEEE-CCCC
T ss_pred CCCEECCCCCCCCCCCCCCCEEEC--CCCCCC---EEECCCCCCHHHHHCCCCCCCCCEEEECCCCCCCCEEECC-CCCC
T ss_conf 255633365740046889513842--899755---5851467541444302445677248842688778644300-1213
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEECCCCC
Q ss_conf 16853467899999999987207992789999999998447887613343022898164316543772798232125886
Q 003630 300 VAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQ 379 (806)
Q Consensus 300 ~~~Qr~~~kL~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~ 379 (806)
++|+++|+++|+++++.+|++|.+.|+++++.+ ++.|+ .|||+|+++|++|+|||||||+|.++.+..
T Consensus 262 -------t~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~-~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~ 329 (706)
T 1yvu_A 262 -------ENLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALR-DYGWYISPEEERAKGKLNFKDTVLDAKGKN 329 (706)
T ss_dssp -------C------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHH-TTTEEECSSCEECCEECCCCCCEECSSCCE
T ss_pred -------CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHH-HCCCEECCCEEECCCEECCCCEEECCCCCC
T ss_conf -------799999999999998259999999999999998----99999-769888886422136873895066478974
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCC---EEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHH
Q ss_conf 32238998743324812212753341---089861788897708999999999975079031799925136999368999
Q 003630 380 EASVNPGFGQWNMINKKMFNGGRVEV---WTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEK 456 (806)
Q Consensus 380 ~~~~~p~~g~W~~~~~~f~~~~~i~~---W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~ 456 (806)
.....+..|.|+++ .+|+.++.++. |.++ +.. .+ ..+++|++.|.+.|+.+||.++.++...... +.++.
T Consensus 330 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~lW~~i-~~~-~~-~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~~---~~~~~ 402 (706)
T 1yvu_A 330 TKVITNLRKFLELC-RPFVKKDVLSVEIISVSV-YKK-LE-WRKEEFLKELINFLKNKGIKLKIKGKSLILA---QTREE 402 (706)
T ss_dssp ECCSSCCHHHHHHC-CCCCSCSEEEEEEEEEEC--------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEEC---SSTTH
T ss_pred CEECCCCCCCCCCC-CCEECCCCCCCCEEEEEE-ECC-HH-HHHHHHHHHHHHHHHHCCCEECCCCCCCCCC---HHHHH
T ss_conf 30236875430003-741114325643389998-166-16-8999999999999987496206874223340---01999
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC-------CCC-CC-----------CCCCCCC------C-C---------CCCCC
Q ss_conf 99999999731699926999981699-------888-87-----------7434544------5-2---------10103
Q 003630 457 ALVDVHNRTTQQGKQLQLLIIILPDV-------SGS-YV-----------PRFLVKI------D-R---------FASLV 501 (806)
Q Consensus 457 ~l~~~~~~~~~~~~~~~lv~~il~~~-------~~~-Y~-----------~~~~~k~------~-~---------l~~Kl 501 (806)
.++.+.+... ...+++|++||+|++ ..+ |. ++||... + . +++||
T Consensus 403 ~~~~l~~~~~-~~~~~qlvlvIlp~~~~~~~~~~~~~Y~~IK~~~~~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KL 481 (706)
T 1yvu_A 403 AKEKLIPVIN-KIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKT 481 (706)
T ss_dssp HHHHHHHHHT-TTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999998750-058995899997774444555675479999999852898549980102166530789999999999984
Q ss_pred CCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCC--CCEEEEEEEECCCCCHHHHCHHHH
Q ss_conf 850035311101477754799939996743068999999984668998416898--730278999707870022201200
Q 003630 502 GGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPE--VAKYRGLVSAQAPHEEIIQDLYKS 579 (806)
Q Consensus 502 GG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSi~a~v~S~d~~~--~~~y~~~~~~q~~~~e~i~~l~~~ 579 (806)
||+||.|+.. ...+|||||+||+||+.++ ..||++|+|+|+| .. +++|.+....| .++|+++++
T Consensus 482 GG~nw~L~~~--------~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~l--- 547 (706)
T 1yvu_A 482 GNIPYKLKEI--------EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEKA--- 547 (706)
T ss_dssp TCCSCEESCC--------TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHHH---
T ss_pred CCEEEEECCC--------CCCCEEEEEEEEECCCCCC-CCCEEEEEEEEEC-CCCCEEEEEEEECCC-CCCHHHHHH---
T ss_conf 9861560258--------8885599999886168788-8856999999985-899889999873366-642699999---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 17987763121289999999998529999448998348893569999999999999999962179999899999952354
Q 003630 580 IQDPQWGLVHGGMIRELLIAFRRSTNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCR 659 (806)
Q Consensus 580 ~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IiiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~ 659 (806)
+..+|+.|.+.++.+|+||||||||||| ++|+++|++||.+ |.|++|||+|+||||
T Consensus 548 -------------~~~~l~~~~~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~ 603 (706)
T 1yvu_A 548 -------------IGDVFSLLEKLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNN 603 (706)
T ss_dssp -------------HHHHHHHHHHTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSC
T ss_pred -------------HHHHHHHHHHHCCCCCCEEEEEECCCCC-------HHHHHHHHHHHHH----CCCCEEEEEEEECCC
T ss_conf -------------9999999998649998379999688885-------8999999999997----299479999970467
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf 434779889889889989997612641555689866189721379-8874478736997248878966799999995402
Q 003630 660 TRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAG-IQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYT 738 (806)
Q Consensus 660 ~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~-~qGTarPt~Y~Vl~de~~~~~d~lq~lty~Lc~~ 738 (806)
+|||+. +||+||||||. ..+||||++|++ +|||+||+||+|+++|. ++|+||++||+|||+
T Consensus 604 tRfF~~-----------~np~pGTvVD~-----~~~~ffL~ss~~~~qGT~rPthY~vv~~D~--~~d~Lq~lty~Lc~l 665 (706)
T 1yvu_A 604 PRFFSN-----------EKFIKGYFYKL-----SEDSVILATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLM 665 (706)
T ss_dssp CCEECS-----------CSCCTTEEEEB-----SSSEEEECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGG
T ss_pred EEEECC-----------CCCCCEEEEEC-----CCCEEEEEECCCCCCCCCCCEEEEEEECCC--CHHHHHHHHHHHHHH
T ss_conf 158788-----------99997389972-----797699994477667887887999991899--999999999998986
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 453368854477233399999998641023
Q 003630 739 YARCTRSVSIVPPAYYAYLAAFRARYYIED 768 (806)
Q Consensus 739 y~~~t~~VsiP~P~yyA~~~a~R~r~~~~~ 768 (806)
|+|||++||+||||||||++|+|++.++++
T Consensus 666 y~r~t~svslPaPiyYAhllA~r~~~~~~p 695 (706)
T 1yvu_A 666 NYSSFQPIKLPATVHYSDKITKLMLRGIEP 695 (706)
T ss_dssp GCCSSSCCCSCTTTTTHHHHHHHHHTCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 016489960475899999999999742781
No 4
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=1.00 E-value=1 Score=749.13 Aligned_cols=384 Identities=27% Similarity=0.439 Sum_probs=321.7
Q ss_pred CCCCEEEC-CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCC---EEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 24812212-7533410898617888977089999999999750790317999---2513699936899999999999731
Q 003630 392 MINKKMFN-GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQP---VIPISSSNPNQIEKALVDVHNRTTQ 467 (806)
Q Consensus 392 ~~~~~f~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 467 (806)
+++++|+. ++++++|+++++..+.+.+.++.|++.|.+.|+.+||.++.+. .......+.+.+ .++.+.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECCCCCHHHHH--HHHHHHCC---
T ss_conf 9888862699727779999912777879999999999999987697717998764103778658887--99875045---
Q ss_pred CCCCCEEEEEECCCCCCC-CC------------CCCCC------CCCC-----------CCCCCCCCEEEECCCCCCCCC
Q ss_conf 699926999981699888-87------------74345------4452-----------101038500353111014777
Q 003630 468 QGKQLQLLIIILPDVSGS-YV------------PRFLV------KIDR-----------FASLVGGRNTVLVDAVQKRIP 517 (806)
Q Consensus 468 ~~~~~~lv~~il~~~~~~-Y~------------~~~~~------k~~~-----------l~~KlGG~n~~l~~~~~~~~p 517 (806)
.+++|++||+|++..+ |. ++||. |.+. +|+||||+||.|+.. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~ 150 (437)
T 2yhb_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (437)
T ss_dssp --HTCSEEEEEESSCCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CH
T ss_pred --CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----CC
T ss_conf --898389999788983489999998701568541897266724766289999999999999849924023666----45
Q ss_pred CCCCCCEEEEEEEEECCC---CC--CCCCCCEEEEEEEECCCCCCEEEEEEEECC-CCCHHHHCHHHHCCCCCCCCCHHH
Q ss_conf 547999399967430689---99--999984668998416898730278999707-870022201200179877631212
Q 003630 518 LVTDRPTIIFGADVTHPQ---PW--GGTSPSIAAVVASMDWPEVAKYRGLVSAQA-PHEEIIQDLYKSIQDPQWGLVHGG 591 (806)
Q Consensus 518 ~~~~~~tmiiG~DV~Hp~---~~--~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~~~~~~~~~~ 591 (806)
++.+.+|||||+||+||+ || ....||++|+|||+| ..+++|.+.+++|. +++|+|++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (437)
T 2yhb_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (437)
T ss_dssp HHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHHHH-------------HH
T ss_conf 4577877999888752565567776789997999987349-996744027898677644489999-------------99
Q ss_pred HHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCC
Q ss_conf 89999999998---5299994489983488935699999999999999999621799-9989999995235443477988
Q 003630 592 MIRELLIAFRR---STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRCRTRLFPAEH 667 (806)
Q Consensus 592 ~~~~~L~~f~~---~~~~~P~~IiiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~Krh~~Rff~~~~ 667 (806)
|+.++|+.|++ .++.+|+||||||||||||||.+|+++|+++|++||.+++.+| .|+||||||+||||+|||+.+.
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~ 296 (437)
T 2yhb_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDP 296 (437)
T ss_dssp HHHHHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEECCCCC
T ss_conf 99999999986554337998638999177566779999999999999999985043679877999997145532546775
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCC
Q ss_conf 988988998999761264155568986618972137988744787369972488------78966799999995402453
Q 003630 668 NRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDEN------RFTADGLQVLTNNLCYTYAR 741 (806)
Q Consensus 668 ~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~------~~~~d~lq~lty~Lc~~y~~ 741 (806)
.+. .++.+|||||||||++||+|.+|||||+||.++|||||||||+||+||+ ++++|+||+|||+|||+|+|
T Consensus 297 ~~~--~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r 374 (437)
T 2yhb_A 297 KHI--HFKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 374 (437)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC---
T ss_pred CCC--CCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 433--446689998557156446777732899733121046876389999378543235799989999999998775203
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 36885447723339999999864102346--899877688884212123899821210167890109
Q 003630 742 CTRSVSIVPPAYYAYLAAFRARYYIEDET--SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 742 ~t~~VsiP~P~yyA~~~a~R~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 806 (806)
||++||+|||+||||++|+|||.|+.+.. ++.+|+++++.. .....+..+|++++++|||+
T Consensus 375 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~mfyl 437 (437)
T 2yhb_A 375 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDDF----ARWGNSGAVHPNLRNSMYYI 437 (437)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHHHTSCCCHHHH----HHHHHHTSCCGGGTTSCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCCHHHCCCCEEC
T ss_conf 1588774878999999999999874541157777776677774----32223466597663783569
No 5
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=1.00 E-value=1 Score=693.41 Aligned_cols=620 Identities=14% Similarity=0.056 Sum_probs=460.3
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCE--EEECCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 388866998989726888747799999999998520267997504527750--443388899972499993899999999
Q 003630 4 LAEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKS--IYTAGPLPFQSKEFIIELPDSDPRPSS 81 (806)
Q Consensus 4 ~~~~~~y~Y~V~i~p~~~~k~~~r~~~~~l~~~~~~~~~~~~~~~yDG~~~--lys~~~L~~~~~~~~v~~~~~~~~~~~ 81 (806)
.|+ .+|||+|+|+|+++.+ . |. .++..++. .+| -.+|||. . ||++++|+. +
T Consensus 18 ~~~-~~y~y~v~~~p~~~~~-~-~~---~~~~~~~~-~~g--~~~fdg~-~~~l~~~~~l~~----------~------- 70 (771)
T 1u04_A 18 IPD-KIYVYRLFNDPEEELQ-K-EG---YSIYRLAY-ENV--GIVIDPE-NLIIATTKELEY----------E------- 70 (771)
T ss_dssp SCS-CEEEEEC-----------------CCHHHHHH-HTT--EEEEETT-TTEEEESSCCCC----------S-------
T ss_pred CCC-EEEEEEEECCCHHHHH-H-HH---HHHHHHHH-HCC--CEEECCC-CEEEECCCEECC----------C-------
T ss_conf 887-0599986238758889-9-99---89998786-537--1896475-203222532146----------8-------
Q ss_pred CCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-CCCC-----CCEECCCCCCCCCCCCCCC
Q ss_conf 989988867999999542046587999853589999746899999997134-4588-----4000233447999995225
Q 003630 82 STRPIRERQFRVVIRLASKPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAA-SSEK-----HTVVGRSFFPTDHGPIGQL 155 (806)
Q Consensus 82 ~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~~~~~~~~~~~iq~Lnivlr~~-~~~~-----~~~~gr~ff~~~~~~~~~l 155 (806)
+..++|+++.+++++ +|++|+++|.. ..++ +..+||+||++. -
T Consensus 71 ------~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~~~~~~~~l~~~~r~~~~~~------~ 119 (771)
T 1u04_A 71 ------GEFIPEGEISFSELR-------------------NDYQSKLVLRLLKENGIGEYELSKLLRKFRKPK------T 119 (771)
T ss_dssp ------SCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHHTTCSHHHHHHHHTTTSCCE------E
T ss_pred ------CCEEEEEEEECCEEC-------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC------C
T ss_conf ------973789999904402-------------------999999999999874620588999766207983------3
Q ss_pred CCCEEEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEE-------
Q ss_conf 9948999857887863066247755335222005761999999996602999998899999988259599994-------
Q 003630 156 GDGVEYWRGYFQSLRLTQMGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLT------- 228 (806)
Q Consensus 156 ~~G~e~~~G~~~Svr~~~~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~~~~l~~~~~~~i~~~Lkgl~V~~~------- 228 (806)
-+.+++|+|+.+|+|..+++++|++|++|++ .+..+|+|+|.+.. ...+.+.....|.-|.+.
T Consensus 120 ~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~ 189 (771)
T 1u04_A 120 FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNKDP---------KELEEFLMTHKENLMLKDIASPLKT 189 (771)
T ss_dssp ETTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTTCH---------HHHHHHHHHSTTTCEEEETTSTTCC
T ss_pred CCCCEEEECCEEEEEECCCCEEEEEEEEEEE-EEHHHHHHHHHHHH---------HHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 4662799873466885378438999866567-55567999999999---------9999888735673785311344426
Q ss_pred -ECCCCCEEEEECCCCCCCCCC--EE---ECCCC-CEEEHHHHHHHHCCCCCCCCCCCEEECCCC-------CCCCEECC
Q ss_conf -259863089932357788875--57---45999-501199999997397445899970533999-------98711012
Q 003630 229 -HLETSNSHRITGISSQPMSQL--AF---TDGSA-TSMSVIQYFRERYNIALQFTSLPALLAGSE-------ARPIYLPM 294 (806)
Q Consensus 229 -~~~~~r~~~I~~i~~~~a~~~--~F---~~~~g-~~iSv~~Yf~~~Y~i~L~~p~lP~v~~~~~-------~~~~ylP~ 294 (806)
|+.|+++|++++ .++..+.. +| ..++| .++++.+||.++|+| ++++||++.++.+ ++.+||.|
T Consensus 190 vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~~~~~~~~~~~i~LiP 266 (771)
T 1u04_A 190 VYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFASKIKKNKNYKIYLLP 266 (771)
T ss_dssp EEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEEESCC-----CCCEEECT
T ss_pred EEECCCCEEECCC-CCCCCCCCHHHEECEEECCCCCCCCHHHHHHHHCCC--CCCCCCEEEECCHHHCCCCCCCEEEECH
T ss_conf 8604662441588-512378985440130213778874116878876486--7678876985144324678896036424
Q ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCC--CCCCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 223521685346789999999998720799278999999999844-----788--7613343022898164316543772
Q 003630 295 ELSRIVAGQRYTQRLNERQVTALLQATCQRPREREDYIRMMARAN-----AYN--EDTLVNKEFGIQVADDLTSVDARIL 367 (806)
Q Consensus 295 Elc~i~~~Qr~~~kL~~~q~~~lik~~~~~P~~R~~~i~~~~~~~-----~~~--~~~~l~~~fGi~i~~~~~~v~grvL 367 (806)
|||++++ ...+++.+.+++|..++...|.+|.+.+.++++.+ .-+ ....|+ .|+ .++.. +.|.++++
T Consensus 267 ELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~~~~~l~~~~~~~~~~~~~~l~-~~~-~l~~~-~~v~~~~~ 340 (771)
T 1u04_A 267 QLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDSDIIDKSLSEIEVEK-IAQ-ELENK-IRVRDDKG 340 (771)
T ss_dssp TTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCCSSBCSSCCEEEEEE-CCG-GGGSS-EEEECSSS
T ss_pred HHHHHCC---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHH-CCCCC-CCCCCCCC
T ss_conf 7653367---435666899999999877798999999999999861544307988999975-554-11767-50025456
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCC----CCC------EEEEEECCCCCCCCHHHHH---------HH
Q ss_conf 798232125886322389987433--24812212753----341------0898617888977089999---------99
Q 003630 368 PAPMLKYHETGQEASVNPGFGQWN--MINKKMFNGGR----VEV------WTCVNFSTRLNRDVPFQFC---------QG 426 (806)
Q Consensus 368 ~~P~i~y~~~~~~~~~~p~~g~W~--~~~~~f~~~~~----i~~------W~vv~~~~~~~~~~~~~f~---------~~ 426 (806)
.+-.+..++. ..+..++|. +++.+++.+.. +++ |.++ ..+ ..+.+.+|+ +.
T Consensus 341 ~~~~i~~~~~-----~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~-~~~--~~~~~~~f~~~~f~~~~~~~ 412 (771)
T 1u04_A 341 NSVPISQLNV-----QKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIIL-DSG--LLADIQNFATNEFRELVKSM 412 (771)
T ss_dssp CEEESCCC-------------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEE-ETT--SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEECCC-----CCCCCCCCCHHHCCCCCEECCCCHHHHHCCCCCCEEEEE-ECC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 6453263276-----777667760553778511046542655043555359999-577--16889988888766677899
Q ss_pred HHHHHHC-----------CCEECCCC-----C-EEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-CCC-CC
Q ss_conf 9999750-----------79031799-----9-2513699936899999999999731699926999981699-888-87
Q 003630 427 LVDMCNS-----------KGMVFNPQ-----P-VIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YV 487 (806)
Q Consensus 427 L~~~~~~-----------~Gi~i~~~-----~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~il~~~-~~~-Y~ 487 (806)
|.+.++. +|+.++.+ + .+.....+.+.++.+++.+.+... +..++|++++++.. ..+ |.
T Consensus 413 l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~--~~~~~lvlv~l~~~~~~d~Y~ 490 (771)
T 1u04_A 413 YYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMK--GKELGLAFIAARNKLSSEKFE 490 (771)
T ss_dssp CC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHT--TCSCEEEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCC--CCCCCEEEEEECCCCCCCHHH
T ss_conf 998753223101103566422578733346751431565534779999999997515--789878999975898866689
Q ss_pred -----------CCCCCC------C----C-----C---------CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf -----------743454------4----5-----2---------101038500353111014777547999399967430
Q 003630 488 -----------PRFLVK------I----D-----R---------FASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVT 532 (806)
Q Consensus 488 -----------~~~~~k------~----~-----~---------l~~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~ 532 (806)
++||.. . + . +++||||+||.|+. |. .++||||+||+
T Consensus 491 ~IK~~~~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~~------p~---~~tmiIGiDV~ 561 (771)
T 1u04_A 491 EIKRRLFNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDY------RF---NYDYIIGIDVA 561 (771)
T ss_dssp HHHHHHHHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESC------CC---SSSEEEEEEEE
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC------CC---CCEEEEEEEEE
T ss_conf 9999985489663998435006765443323132899999999999985983326068------99---98799999987
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCEE
Q ss_conf 68999999984668998416898730278999707870022201200179877631212899999999985-29999448
Q 003630 533 HPQPWGGTSPSIAAVVASMDWPEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRRS-TNFKPHRI 611 (806)
Q Consensus 533 Hp~~~~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~-~~~~P~~I 611 (806)
|+++++ ..+|++|.|+|.| ....+|.+.+..|.+++ .+. + ..++.++|.+|++. +|.+|+||
T Consensus 562 H~~~~~-~svs~~A~V~s~d-g~~~~~~s~~~~~~~~E-~i~-l-------------~~~l~~~L~~y~~~n~~~lP~RI 624 (771)
T 1u04_A 562 PMKRSE-GYIGGSAVMFDSQ-GYIRKIVPIKIGEQRGE-SVD-M-------------NEFFKEMVDKFKEFNIKLDNKKI 624 (771)
T ss_dssp EECCTT-TCEEEEEEEEETT-SCEEEEEEEECCCCSSS-SCC-H-------------HHHHHHHHHHHHHTTCCCTTCEE
T ss_pred CCCCCC-CCEEEEEEEECCC-CCEEEEEEEEEECCCCC-EEC-H-------------HHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 479899-7469999997799-97899988873037763-773-9-------------99999999999997079999779
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 99834889356999999999999999996217999989999995235443477988988988998999761264155568
Q 003630 612 IFYRDGVGERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSGNILPGTVVDTEICH 691 (806)
Q Consensus 612 iiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~ 691 (806)
||||||+ |.++|+++|++||... .|+++||+|+||||+||| .+ ++||||||
T Consensus 625 IiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh~tRfF-~~------------~~pGTVV~----- 675 (771)
T 1u04_A 625 LLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNHPVRAF-AN------------MKMYFNLG----- 675 (771)
T ss_dssp EEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCCCCCBS-SC------------SCEEEEET-----
T ss_pred EEECCCC-------CCHHHHHHHHHHHHHC----CCCEEEEEEEECCCEEEE-CC------------CCCEEEEE-----
T ss_conf 9991888-------8789999999999855----998899999945751564-69------------99804996-----
Q ss_pred CCCCCEEEEECC--CCCCCCCCCEE--EEEECCCCCC----HHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 986618972137--98874478736--9972488789----66799999995402453368-854477233399999998
Q 003630 692 PTEFDFYLNSHA--GIQGTSRPTRY--HVLYDENRFT----ADGLQVLTNNLCYTYARCTR-SVSIVPPAYYAYLAAFRA 762 (806)
Q Consensus 692 p~~~dFyL~Sh~--~~qGTarPt~Y--~Vl~de~~~~----~d~lq~lty~Lc~~y~~~t~-~VsiP~P~yyA~~~a~R~ 762 (806)
. ||||+||. +.|||++|+|| +|++|+++++ +|+||++||+|||+|+||++ +||+||||||||++|++.
T Consensus 676 --~-DFyL~Sh~v~~~qGTprPthY~~~Vi~D~~~~~~~~~~D~lq~lty~Lchlyyn~~~~svrvPAP~~YAhklA~lv 752 (771)
T 1u04_A 676 --G-AIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAI 752 (771)
T ss_dssp --T-EEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHH
T ss_pred --C-CEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf --8-8899834545888888878999788752788787778999999999865501457999964781279999999999
Q ss_pred HHHCCC
Q ss_conf 641023
Q 003630 763 RYYIED 768 (806)
Q Consensus 763 r~~~~~ 768 (806)
+.+++.
T Consensus 753 gq~~~~ 758 (771)
T 1u04_A 753 RNEWKI 758 (771)
T ss_dssp HTTCCC
T ss_pred HHHHCC
T ss_conf 766245
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=1.00 E-value=1 Score=618.31 Aligned_cols=596 Identities=16% Similarity=0.166 Sum_probs=429.6
Q ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEECCCCCCC-CCEEEEECCCCCCCCCCCC
Q ss_conf 888669989897268887477999999999985202679975045277504433888999-7249999389999999998
Q 003630 5 AEKDIHHYDVSITPWVTSKKINRQIISQLINLYRLTDLGGRIPAYDGMKSIYTAGPLPFQ-SKEFIIELPDSDPRPSSST 83 (806)
Q Consensus 5 ~~~~~y~Y~V~i~p~~~~k~~~r~~~~~l~~~~~~~~~~~~~~~yDG~~~lys~~~L~~~-~~~~~v~~~~~~~~~~~~~ 83 (806)
++.+.|.|.|.++|+.+.....+ ++..+.+. .|. ..|=-| ..|.|-.+ |.. ..|..|.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~------------ 80 (685)
T 3ho1_A 22 EELRPWRLEVVLDPPPGREEVYP-LLAQVARR-----AGG-VTVRMG-DGLASWSP-PEVLVLEGTLA------------ 80 (685)
T ss_dssp TTSSCEEEEEEEESCCCTTTHHH-HHHHHHHH-----TCS-SEEEET-TEEEESSC-TTTSCCEEEEE------------
T ss_pred HHCCEEEEEEECCCCCCCCHHHH-HHHHHHHH-----HCC-EEEEEC-CCEECCCC-CHHHHCCCHHC------------
T ss_conf 34850589985079988414778-99999987-----387-478632-74000467-05541022000------------
Q ss_pred CCCCCCEEEEEEEECC--CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC-----C-CCCCCEECCCCCCCCCCCCCCC
Q ss_conf 9988867999999542--046587999853589999746899999997134-----4-5884000233447999995225
Q 003630 84 RPIRERQFRVVIRLAS--KPDLYTLQQFLGRRHFEAPYDVIQVLGVILSAA-----S-SEKHTVVGRSFFPTDHGPIGQL 155 (806)
Q Consensus 84 ~~~~~~~~~V~I~~~~--~i~~~~l~~~l~~~~~~~~~~~iq~Lnivlr~~-----~-~~~~~~~gr~ff~~~~~~~~~l 155 (806)
+..+++.-.+...+ .++.. ...--++|+.+-|.. . ..+...-|.-.+... . .-
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~ 141 (685)
T 3ho1_A 81 --RMGQTYAYRLYPKGRRPLDPK-------------DPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRRE---H-AR 141 (685)
T ss_dssp --CSSCEEEEEEEEEEECCCCTT-------------SHHHHHHHHHHHHHHHHHHHHTCSSSEEETTEEEEEE---E-EE
T ss_pred --CCCCCCCEEEEECCCCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEC---C-CC
T ss_conf --236886636530566457889-------------8678899999999999999876533377647898406---8-87
Q ss_pred CCCEEEEEEEEEEEEEEC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 994899985788786306-6247755335222005761999999996602999998899999988259599994259863
Q 003630 156 GDGVEYWRGYFQSLRLTQ-MGLSLNIDVSARSFYEPILVTEFVQNYCRNLSRPLSDQVRLKVKKELKGIKVVLTHLETSN 234 (806)
Q Consensus 156 ~~G~e~~~G~~~Svr~~~-~~l~LniD~~~~~F~~~~~l~d~~~~~~~~~~~~l~~~~~~~i~~~Lkgl~V~~~~~~~~r 234 (806)
|.|.|+.+|+-..|.+.. ++++|.||+.+. |+++.++.+++.+.. . |- ..|.++| +.+
T Consensus 142 ~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r-~~~~~~~~~~l~~~~----------------~-~~-~~v~~~y--~~~ 200 (685)
T 3ho1_A 142 GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYR-ILCEMSLEAWLAQGH----------------P-LP-KRVRNAY--DRR 200 (685)
T ss_dssp ETTEEEEEEEEEEEEECSSSEEEEEEEEEEE-EEECSCHHHHHHHSC----------------C-CC-SEEEESS--SCC
T ss_pred CCCEEEECCEEEEEEECCCCCEEEEEEEHEE-ECCHHHHHHHHHHCC----------------C-CC-HHHHHHC--CCC
T ss_conf 7743884366999998778867999740301-147644999998179----------------8-32-7776431--662
Q ss_pred EEEEECCCCCCCCCCEEECCCCCEEEHHHHHHHHCCCCCCCCCCCEEECCCC----CC-----CCEECCCCEEECCCCCC
Q ss_conf 0899323577888755745999501199999997397445899970533999----98-----71101222352168534
Q 003630 235 SHRITGISSQPMSQLAFTDGSATSMSVIQYFRERYNIALQFTSLPALLAGSE----AR-----PIYLPMELSRIVAGQRY 305 (806)
Q Consensus 235 ~~~I~~i~~~~a~~~~F~~~~g~~iSv~~Yf~~~Y~i~L~~p~lP~v~~~~~----~~-----~~ylP~Elc~i~~~Qr~ 305 (806)
+|.|.+|+. ..|+..| ... .+|++||++++|.+ +.-++|.|+...+ .+ .++|.|||| +.
T Consensus 201 ~~~~~~~~~-~~p~~~~-l~~--~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~----- 268 (685)
T 3ho1_A 201 TWELLRLGE-EDPKELP-LPG--GLSLLDYHASKGRL--QGREGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LE----- 268 (685)
T ss_dssp EECCCEEEC-CCTTCC---------CSTTTTTTTSTT--TTSCCCSEEEECSCC---CCEEEETTSEEEECC-TT-----
T ss_pred EEEEEECCC-CCCHHEE-CCC--CCCHHHHHHHCCCC--CCCCCCEEEEEECCCCCCCCCEEEEEEECHHHH-HH-----
T ss_conf 489863366-8933234-578--86599997542653--346786599995544578733244256322767-87-----
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEECCCCCCCCCCC
Q ss_conf 67899999999987207992789999999998447887613343022898164316543772798232125886322389
Q 003630 306 TQRLNERQVTALLQATCQRPREREDYIRMMARANAYNEDTLVNKEFGIQVADDLTSVDARILPAPMLKYHETGQEASVNP 385 (806)
Q Consensus 306 ~~kL~~~q~~~lik~~~~~P~~R~~~i~~~~~~~~~~~~~~l~~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p 385 (806)
.|++.+.+ .++..+|++|++++.++++. +++ .|||+ +++|++++||+||||+| +++. .+
T Consensus 269 --~l~~~~~~---~~trlsP~~R~~~l~~~~~~-------i~~-~~Gl~-~~~~i~v~gRvLppp~I-~g~~----~~-- 327 (685)
T 3ho1_A 269 --DLHEEEGS---LALSLPWEERRRRTREIASW-------IGR-RLGLG-TPEAVRAQAYRLSIPKL-MGRR----AV-- 327 (685)
T ss_dssp --TTSSCSSC---CCCCCCHHHHHHHHHHHHHH-------HHH-TTCSC-CCEEEEEEEEECCCCCE-ESSS----BC--
T ss_pred --HHHHHHHH---CCCCCCHHHHHHHHHHHHHH-------HHH-HCCCC-CCCCCEEEEEECCHHHH-CCCC----CC--
T ss_conf --77666640---62567989999999999999-------888-53999-89711687788388995-5899----75--
Q ss_pred CCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 98743324812212753341089861788897708999999999975079031799925136999368999999999997
Q 003630 386 GFGQWNMINKKMFNGGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQPVIPISSSNPNQIEKALVDVHNRT 465 (806)
Q Consensus 386 ~~g~W~~~~~~f~~~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (806)
.+.|++++.+|+.++.. .|+++++.+ +.+.+++|+++|.+.|+.+||.|+.+.......+ ...+...++++.+
T Consensus 328 -~~~~d~~~~~~~~~~~~-~~ail~l~~--~~~~~~~f~~~L~~va~~~G~~i~~~~~~~~~~d-~~~~~~~l~~~~~-- 400 (685)
T 3ho1_A 328 -SKPADALRVGFYRAQET-ALALLRLDG--AQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQ-GLAFREALRKAKE-- 400 (685)
T ss_dssp -SSGGGHHHHCCSSCCCE-EEEEEECSS--CCSCCHHHHHHHHHHHHSSSSCEEEEECCCCGGG-THHHHHHHHHHHH--
T ss_pred -CCCHHHCCCCCEECCCC-EEEEEECCC--CHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCC-HHHHHHHHHHHHH--
T ss_conf -78621114753113673-599996267--2678999999999988767937635511047773-6999999998642--
Q ss_pred HHCCCCCEEEEEECCCCCCC-CC-----------CCCCCC-C----CC---------CCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 31699926999981699888-87-----------743454-4----52---------10103850035311101477754
Q 003630 466 TQQGKQLQLLIIILPDVSGS-YV-----------PRFLVK-I----DR---------FASLVGGRNTVLVDAVQKRIPLV 519 (806)
Q Consensus 466 ~~~~~~~~lv~~il~~~~~~-Y~-----------~~~~~k-~----~~---------l~~KlGG~n~~l~~~~~~~~p~~ 519 (806)
.++|+|+||+|++.++ |. ++||.. . +. +|+||||+||.|+. |.
T Consensus 401 ----~~~qlvvvIlp~~~~~~y~~IKk~~~~~GIpTQcV~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~- 469 (685)
T 3ho1_A 401 ----EGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSG------AY- 469 (685)
T ss_dssp ----TTCCEEEEEESCCCHHHHHHHHHHHHHTTCCEEEEESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC-
T ss_pred ----CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECC------CC-
T ss_conf ----3998899997799954789999998639976389961225640719999999998873983578568------99-
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 7999399967430689999999846689984168-987302789997078700222012001798776312128999999
Q 003630 520 TDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDW-PEVAKYRGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLI 598 (806)
Q Consensus 520 ~~~~tmiiG~DV~Hp~~~~~~~pSi~a~v~S~d~-~~~~~y~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~ 598 (806)
.++||||+||+|++. .++++++++.+- ....+| +..+.|.+.++.++++ .+|+.++|.
T Consensus 470 --~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L-------------~~~l~eaL~ 528 (685)
T 3ho1_A 470 --PAELAVGFDAGGRES-----FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVV-------------WDLLEETLW 528 (685)
T ss_dssp --SCSEEEEEEEEETTE-----EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHH-------------HHHHHHHHH
T ss_pred --CCEEEEEEEEECCCC-----CCCCEEEEEEECCCCEEEE-EEEECCCCCEECHHHH-------------HHHHHHHHH
T ss_conf --986999999973898-----9612399999788887776-7887267858649999-------------999999999
Q ss_pred HHHHHCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99985299994489983488-93569999999999999999962179999899999952354434779889889889989
Q 003630 599 AFRRSTNFKPHRIIFYRDGV-GERQFSQVLLHEMNAIRQACASLEEGYAPPVTFVVVQKRCRTRLFPAEHNRCDLTDRSG 677 (806)
Q Consensus 599 ~f~~~~~~~P~~IiiyRdGv-segq~~~v~~~Ei~~i~~a~~~~~~~~~p~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~ 677 (806)
.|++.+|.+|+||||||||| +|||++ +|++||.++ .|++|||+|+||||+|||+.+ .
T Consensus 529 ~Y~k~ng~lP~RIIIyRDGV~se~E~~--------~I~eAl~~~----~~~~t~IvVqKRh~tRfF~~n----------~ 586 (685)
T 3ho1_A 529 AFRRKAGRLPSRVLLLRNGRVPQDEFA--------LALEALARE----GIAYDLVSVRKSGGGRVYPVQ----------G 586 (685)
T ss_dssp HHHHHHSSCCSEEEEEECSSSCSGGGH--------HHHHHHHHT----TCEEEEEEEESSCCCCEEESS----------S
T ss_pred HHHHHHCCCCCEEEEEECCCCCHHHHH--------HHHHHHHHC----CCCEEEEEEEECCCCEEECCC----------C
T ss_conf 999983899848999958989989999--------999999861----998799999916871374689----------8
Q ss_pred CCCCCEEECCCCCCCCCCCEEEEEC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHH
Q ss_conf 9976126415556898661897213--79887447873699724887896679999999540245336-88544772333
Q 003630 678 NILPGTVVDTEICHPTEFDFYLNSH--AGIQGTSRPTRYHVLYDENRFTADGLQVLTNNLCYTYARCT-RSVSIVPPAYY 754 (806)
Q Consensus 678 N~~pGTvVd~~it~p~~~dFyL~Sh--~~~qGTarPt~Y~Vl~de~~~~~d~lq~lty~Lc~~y~~~t-~~VsiP~P~yy 754 (806)
+|.+||+++ ..+||||++| .+.|||+||+||+ +|++++++|+||++||+|||+|+||| ++||+|+||||
T Consensus 587 pp~~Gt~v~------~e~d~flL~s~gsv~qGT~rPthy~--~D~~~~s~D~LQ~ltY~Lchmy~nst~~svsvPAP~~Y 658 (685)
T 3ho1_A 587 RLADGLYVP------LEDKTFLLLTVHRDFRGTPRPLKLV--HEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHL 658 (685)
T ss_dssp CCCSSEEEE------CSTTEEEEECCCCCSSSCCCCEEEE--EEEECSCHHHHHHHHHHGGGCCSSCSSSCCSSCHHHHH
T ss_pred CCCCEEEEE------CCCCEEEEEECCCCCCCCCCEEEEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 998759980------7897899996688876678619999--89899899999999999777511689999986757899
Q ss_pred HHHHH-HHHH
Q ss_conf 99999-9986
Q 003630 755 AYLAA-FRAR 763 (806)
Q Consensus 755 A~~~a-~R~r 763 (806)
||++| .|||
T Consensus 659 AhklAk~~~r 668 (685)
T 3ho1_A 659 ADRLVKEVGR 668 (685)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999987
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=1.00 E-value=1 Score=600.93 Aligned_cols=335 Identities=25% Similarity=0.403 Sum_probs=278.4
Q ss_pred CCCCEEEC-CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCCC---EEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 24812212-7533410898617888977089999999999750790317999---2513699936899999999999731
Q 003630 392 MINKKMFN-GGRVEVWTCVNFSTRLNRDVPFQFCQGLVDMCNSKGMVFNPQP---VIPISSSNPNQIEKALVDVHNRTTQ 467 (806)
Q Consensus 392 ~~~~~f~~-~~~i~~W~vv~~~~~~~~~~~~~f~~~L~~~~~~~Gi~i~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 467 (806)
|++++|+. ++++++|+++++.++.+.+.+++|++.|.+.|+.+||.++.+. .........+.+ .++.+.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~--- 76 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM--- 76 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH---
T ss_pred CCCCEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCEECCCCCHHHHH--HHHHHHCC---
T ss_conf 9888851699727789999902777879999999999999987697747998754103778638785--89875045---
Q ss_pred CCCCCEEEEEECCCCCCC-CC------------CCCCC------CCCC-----------CCCCCCCCEEEECCCCCCCCC
Q ss_conf 699926999981699888-87------------74345------4452-----------101038500353111014777
Q 003630 468 QGKQLQLLIIILPDVSGS-YV------------PRFLV------KIDR-----------FASLVGGRNTVLVDAVQKRIP 517 (806)
Q Consensus 468 ~~~~~~lv~~il~~~~~~-Y~------------~~~~~------k~~~-----------l~~KlGG~n~~l~~~~~~~~p 517 (806)
.+++|++||+|+++.+ |. ++||. |.+. +|+||||+||.|++. +|
T Consensus 77 --~~~~lvl~ilp~~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~~----~~ 150 (388)
T 2yha_A 77 --SSHQFVVVLLPRKDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IP 150 (388)
T ss_dssp --HTCSEEEEEESSSCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCSC----CH
T ss_pred --CCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCC----CC
T ss_conf --898299999789983489999998710579750898345605767489999999999999718933122566----55
Q ss_pred CCCCCCEEEEEEEEECCC---CC--CCCCCCEEEEEEEECCCCCCEEEEEEEECC-CCCHHHHCHHHHCCCCCCCCCHHH
Q ss_conf 547999399967430689---99--999984668998416898730278999707-870022201200179877631212
Q 003630 518 LVTDRPTIIFGADVTHPQ---PW--GGTSPSIAAVVASMDWPEVAKYRGLVSAQA-PHEEIIQDLYKSIQDPQWGLVHGG 591 (806)
Q Consensus 518 ~~~~~~tmiiG~DV~Hp~---~~--~~~~pSi~a~v~S~d~~~~~~y~~~~~~q~-~~~e~i~~l~~~~~~~~~~~~~~~ 591 (806)
++.+.+|||||+||+||+ || ....||++|+|||+| ..+++|.+.+++|. +++|+|++| ++
T Consensus 151 ~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~ 216 (388)
T 2yha_A 151 LLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TD 216 (388)
T ss_dssp HHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HH
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECC-CCCCEEEEEEEECCCCCCCHHHHH-------------HH
T ss_conf 4577877999877751565677776789987999877759-997779789998688862579999-------------99
Q ss_pred HHHHHHHHHHH---HCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCC
Q ss_conf 89999999998---5299994489983488935699999999999999999621799-9989999995235443477988
Q 003630 592 MIRELLIAFRR---STNFKPHRIIFYRDGVGERQFSQVLLHEMNAIRQACASLEEGY-APPVTFVVVQKRCRTRLFPAEH 667 (806)
Q Consensus 592 ~~~~~L~~f~~---~~~~~P~~IiiyRdGvsegq~~~v~~~Ei~~i~~a~~~~~~~~-~p~it~Ivv~Krh~~Rff~~~~ 667 (806)
|+.++|+.|++ .+|.+|+||||||||||||||.+|+++|+++|++||..++.+| .|+||||||+||
T Consensus 217 ~~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr---------- 286 (388)
T 2yha_A 217 KFKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG---------- 286 (388)
T ss_dssp HHHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC----------
T ss_conf 9999999998756543789752899946867257999999999999999998514467986799996466----------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCC------CCCHHHHHHHHHHHHHCCCC
Q ss_conf 988988998999761264155568986618972137988744787369972488------78966799999995402453
Q 003630 668 NRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQGTSRPTRYHVLYDEN------RFTADGLQVLTNNLCYTYAR 741 (806)
Q Consensus 668 ~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qGTarPt~Y~Vl~de~------~~~~d~lq~lty~Lc~~y~~ 741 (806)
||||||+||+||+ ++++|+||+|||+|||+|+|
T Consensus 287 -----------------------------------------arPthY~Vl~De~f~~~~~~~~~d~lq~lty~Lc~~y~r 325 (388)
T 2yha_A 287 -----------------------------------------SGSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGR 325 (388)
T ss_dssp ---------------------------------------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHHC---
T ss_pred -----------------------------------------CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf -----------------------------------------688269998278643345799999999999999777533
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 36885447723339999999864102346--899877688884212123899821210167890109
Q 003630 742 CTRSVSIVPPAYYAYLAAFRARYYIEDET--SAGGSTDGNRSTAERNLAIRPLPVIKDNVKDVMFYC 806 (806)
Q Consensus 742 ~t~~VsiP~P~yyA~~~a~R~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 806 (806)
||++||+|||+||||++|+|||.|+.+.. ++++|+++++. . .....+..+|++++++|||+
T Consensus 326 ~t~sVsipaP~yYAh~~a~R~r~~l~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~mfyl 388 (388)
T 2yha_A 326 ATKAVSICPPAYYADLVCDRARIHQKELFDALDENDSVKTDD--F--ARWGNSGAVHPNLRNSMYYI 388 (388)
T ss_dssp -------CHHHHHHHHHHHHHHHHCHHHHHHHTTCSCCCHHH--H--HHHHHHTCCCGGGTTSCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--C--CCCCCCCCCCHHHCCCCEEC
T ss_conf 258877575899999999999998554126777666667776--4--33223466597763784369
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=1.00 E-value=1 Score=409.80 Aligned_cols=336 Identities=13% Similarity=0.098 Sum_probs=235.8
Q ss_pred EEECCCCEEECCCC-CCCCC----CCCCCCCCCCCCEEECCCCC--CCEEEEEECCCCCCCCHHHHHHHHHHHHH---CC
Q ss_conf 77279823212588-63223----89987433248122127533--41089861788897708999999999975---07
Q 003630 365 RILPAPMLKYHETG-QEASV----NPGFGQWNMINKKMFNGGRV--EVWTCVNFSTRLNRDVPFQFCQGLVDMCN---SK 434 (806)
Q Consensus 365 rvL~~P~i~y~~~~-~~~~~----~p~~g~W~~~~~~f~~~~~i--~~W~vv~~~~~~~~~~~~~f~~~L~~~~~---~~ 434 (806)
.-|..|.+.|+.++ ....+ +|..| +++...+..... .+|++++..+ +.+ |++.|.+... ..
T Consensus 4 ~~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~--~~~----~l~~l~~~~~~~~g~ 74 (427)
T 2w42_A 4 YKIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQ--FSS----LINQLKSQISSKIDE 74 (427)
T ss_dssp -------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCT--TCH----HHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCHHHH---HHHCCCCCCCCCCCCEEEEEECCC--CHH----HHHHHHHHHHHCCCC
T ss_conf 44478753441247973444456787899---986699746778898899997733--089----999998753312898
Q ss_pred CEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--------CCCCCC-CC----------CCCCCC--
Q ss_conf 903179992513699936899999999999731699926999981--------699888-87----------743454--
Q 003630 435 GMVFNPQPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIIL--------PDVSGS-YV----------PRFLVK-- 493 (806)
Q Consensus 435 Gi~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lv~~il--------~~~~~~-Y~----------~~~~~k-- 493 (806)
++.+..+. . +.+.+.+.+++..+ .++++++||+ |++... |. ++||..
T Consensus 75 ~f~~~~~~-~-----~~~~y~~~i~~~l~------~~~~lvlvilp~~~~~~~~~~~~~~y~~K~~~~~~gvptQ~I~~~ 142 (427)
T 2w42_A 75 VWHIHNIN-I-----SEFIYDSPHFDSIK------SQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYD 142 (427)
T ss_dssp TTCCCSCE-E-----EEEECSSSSHHHHH------HHHHHHHHHCCSEEEEEESSCCHHHHHHHHHHHHTTSCEEEEEGG
T ss_pred CEEECCCC-C-----CHHHHHHHHHHHHC------CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHH
T ss_conf 40535776-7-----80789999999743------799799999976010458987750599999986799675898733
Q ss_pred ----CC------C----CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEE
Q ss_conf ----45------2----101038500353111014777547999399967430689999999846689984168987302
Q 003630 494 ----ID------R----FASLVGGRNTVLVDAVQKRIPLVTDRPTIIFGADVTHPQPWGGTSPSIAAVVASMDWPEVAKY 559 (806)
Q Consensus 494 ----~~------~----l~~KlGG~n~~l~~~~~~~~p~~~~~~tmiiG~DV~Hp~~~~~~~pSi~a~v~S~d~~~~~~y 559 (806)
.+ + +++||||+||.|+.. .|. .++||||+||+|++++ +++|++.+.| .+...+
T Consensus 143 tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~ 209 (427)
T 2w42_A 143 ILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTML 209 (427)
T ss_dssp GCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEE
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC----CCC---CCEEEEEEEEEECCCC-----CEEEEEEEEC-CCCCEE
T ss_conf 54556505699999999978738966064567----898---9869997899876999-----5799999983-899789
Q ss_pred EEEEEECCCCCHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCC--EEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7899970787002220120017987763121289999999998-5299994--489983488935699999999999999
Q 003630 560 RGLVSAQAPHEEIIQDLYKSIQDPQWGLVHGGMIRELLIAFRR-STNFKPH--RIIFYRDGVGERQFSQVLLHEMNAIRQ 636 (806)
Q Consensus 560 ~~~~~~q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~-~~~~~P~--~IiiyRdGvsegq~~~v~~~Ei~~i~~ 636 (806)
...+..|.+++|++++| .+++.++|..|++ .|+.+|+ ||||| ||+..+.++|+++|++
T Consensus 210 ~~~~~~~~~~~E~~~~l-------------~~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~ 270 (427)
T 2w42_A 210 WNEISPIVTSSEYLTYL-------------KSTIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKE 270 (427)
T ss_dssp EEEECCCEEGGGHHHHH-------------HHHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHH-------------HHHHHHHHHHHHHHHCCCCCCCEEEEEE------EECCCCCHHHHHHHHH
T ss_conf 99888427706799999-------------9999999999998742789982599999------2141116999999999
Q ss_pred HHHHHCC----CCCCCEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCC----
Q ss_conf 9996217----9999899999952354-434779889889889989997612641555689866189721379887----
Q 003630 637 ACASLEE----GYAPPVTFVVVQKRCR-TRLFPAEHNRCDLTDRSGNILPGTVVDTEICHPTEFDFYLNSHAGIQG---- 707 (806)
Q Consensus 637 a~~~~~~----~~~p~it~Ivv~Krh~-~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh~~~qG---- 707 (806)
||.++.. +++|+++||+|+|||| +|||..+. .+||+||||||.+ .+|||.+|.+.|+
T Consensus 271 a~~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~--------~~nP~~GTvVd~~------~~~~l~~~~g~q~~~~~ 336 (427)
T 2w42_A 271 TVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNN--------RFHPYEGTKVKLS------SKRYLLTLLQPYLKRNG 336 (427)
T ss_dssp HHHHHHHTTSSCTTCEEEEEEEEECCCEEEEC----------------CCSEEEESS------SSEEEEEEEC-------
T ss_pred HHHHHCCCCCCCCCCCEEEEEEECCCCCEEEECCCC--------CCCCCCCEEEECC------CCEEEEEEEEEECCCCC
T ss_conf 998715443457888779999981666546654788--------8998996499758------98089999745236566
Q ss_pred --C---CCCCEEEEEEC----CCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --4---47873699724----8878-96679999999540245336885447723339999999864102
Q 003630 708 --T---SRPTRYHVLYD----ENRF-TADGLQVLTNNLCYTYARCTRSVSIVPPAYYAYLAAFRARYYIE 767 (806)
Q Consensus 708 --T---arPt~Y~Vl~d----e~~~-~~d~lq~lty~Lc~~y~~~t~~VsiP~P~yyA~~~a~R~r~~~~ 767 (806)
+ ++||||+|++| |+++ ++|+||++||+|||+|+|||+++|+||||||||++|+|++...+
T Consensus 337 ~~~~~~~~Pt~y~vi~d~~~~~~~~~~~d~lq~lty~L~~~nw~~t~~v~vPap~~YAhklA~l~~~~~~ 406 (427)
T 2w42_A 337 LEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNR 406 (427)
T ss_dssp --CEEEEEEEEEEEEEECCCTTTHHHHHHHHHHHHHHHHTCCTTSSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5653588987999996687684459899999999998547656888889837650769999999865642
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=1.00 E-value=1 Score=217.97 Aligned_cols=135 Identities=26% Similarity=0.443 Sum_probs=119.3
Q ss_pred CCCCCHHHHHHHHHHH--C-CCCCCHHHHHHHHHHHCCCEEEEEECC----CCCEEEEECCCCCCCCCCEEECCCCCEEE
Q ss_conf 0576199999999660--2-999998899999988259599994259----86308993235778887557459995011
Q 003630 188 YEPILVTEFVQNYCRN--L-SRPLSDQVRLKVKKELKGIKVVLTHLE----TSNSHRITGISSQPMSQLAFTDGSATSMS 260 (806)
Q Consensus 188 ~~~~~l~d~~~~~~~~--~-~~~l~~~~~~~i~~~Lkgl~V~~~~~~----~~r~~~I~~i~~~~a~~~~F~~~~g~~iS 260 (806)
+++++|+||+++++.. . .+...+.++.+++++|+|++|.++|++ ++++|+|.||++.++++.+| +.+|.++|
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F-~~~g~~is 80 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-EHDGKKVT 80 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEE-ESSSCEEE
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCEEE-ECCCCEEE
T ss_conf 88634999999986216666557566899999997498399995687766787359981056899521289-74997798
Q ss_pred HHHHHHHHCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999999739744589997053399998711012223521685346789999999998720799
Q 003630 261 VIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLNERQVTALLQATCQR 324 (806)
Q Consensus 261 v~~Yf~~~Y~i~L~~p~lP~v~~~~~~~~~ylP~Elc~i~~~Qr~~~kL~~~q~~~lik~~~~~ 324 (806)
|+|||+++ |++|+||+||||++|++.+++|||||||.|+|||+++++|+++|+++||++||.+
T Consensus 81 v~~Yf~~~-~~~l~~p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 81 IASYFHSR-NYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp HHHHHHHT-TCCCSSTTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred HHHHHHHC-CCCCCCCCCCEEEECCCCCCEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999872-9977899987587437889758511858805895224318989999999998359
No 10
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=1.00 E-value=1 Score=201.33 Aligned_cols=128 Identities=27% Similarity=0.455 Sum_probs=108.7
Q ss_pred ECCCCCCCCCCCHHHHHHHHHH-HCCCCCCH--HHHHHHHHHHCCCEEEEEECCC----CCEEEEECCCCCCCCCCEEEC
Q ss_conf 3352220057619999999966-02999998--8999999882595999942598----630899323577888755745
Q 003630 181 DVSARSFYEPILVTEFVQNYCR-NLSRPLSD--QVRLKVKKELKGIKVVLTHLET----SNSHRITGISSQPMSQLAFTD 253 (806)
Q Consensus 181 D~~~~~F~~~~~l~d~~~~~~~-~~~~~l~~--~~~~~i~~~Lkgl~V~~~~~~~----~r~~~I~~i~~~~a~~~~F~~ 253 (806)
+...+.|++++||+|++.+++. ...+.++. ....++++.||||+|.++|+++ .|.|+|.||+..++.+.+| +
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f-~ 453 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETF-E 453 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEE-E
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHCEE-C
T ss_conf 645440077720999999876303667865541568999997078179996688766788759986377797542685-3
Q ss_pred CCCCEEEHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEECCCCEEECCCCCCCCCCC
Q ss_conf 999501199999997397445899970533999987110122235216853467899
Q 003630 254 GSATSMSVIQYFRERYNIALQFTSLPALLAGSEARPIYLPMELSRIVAGQRYTQRLN 310 (806)
Q Consensus 254 ~~g~~iSv~~Yf~~~Y~i~L~~p~lP~v~~~~~~~~~ylP~Elc~i~~~Qr~~~kL~ 310 (806)
.+|++|||+|||+ +|||+|+||+||||++|++++++|||||||.|+|||||++||+
T Consensus 454 ~~~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 454 HDGKKVTIASYFH-SRNYPLKFPQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp ETTEEEEHHHHHH-HTTCCCSCTTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CCCEEEEHHHHHH-HCCCCCCCCCCCEEECCCCCCCCEECCEEEEECCCCCCCCCCC
T ss_conf 6991888999999-7197565899986934888788561403268648841145579
Done!