BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003631
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZPJ0|TEX2_MOUSE Testis-expressed sequence 2 protein OS=Mus musculus GN=Tex2 PE=1 SV=2
Length = 1128
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 38/317 (11%)
Query: 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRV 411
N L+ R+F+D + +IQ LS ++ P ++ E+ T++D G P +
Sbjct: 826 NALLGRIFWDFLGEKYWSDVVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFK 885
Query: 412 LPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLE 471
D +W ++++ Y G ++ +ET++ + +L + EA VG++ E
Sbjct: 886 PYVDHQGLW-IDLEMSYNGSFLMTLETKMNLTKLGKEPLV------EALKVGEIGK---E 935
Query: 472 GFEYFGKQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVS---TSGSRWKSILNSIAK 528
G L S+ ++ DP P+ ++ +P + G R I+ + K
Sbjct: 936 GCRPRAYCLADSDEESSSAGSSEEDDP-PEPTAGDKQPLPGAEGYVGGHRTSKIMRFVDK 994
Query: 529 ---------------------QVSQVPISLSIRVAALRGTLRLHIKPPPSDQLWFGFTSM 567
+VS P+ L++ V RGTL ++I PPP+D++W+GF
Sbjct: 995 ITKSKYFQKATETEFIKKKIEEVSNTPLLLTVEVQECRGTLAVNIPPPPTDRIWYGFRKP 1054
Query: 568 PDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAEKDDWVPR 627
P +E +G+ ++T V ++ + + +++ V+PN + V +P M + D PR
Sbjct: 1055 PYVELKARPKLGEREVTLVHVTEWIEKKLEQELQKVFVMPNMDDVYIPIMHSAMD---PR 1111
Query: 628 NVAPFIWLNHEANSDQV 644
+ + + SDQ+
Sbjct: 1112 STSCLLKEPPVETSDQL 1128
>sp|Q8IWB9|TEX2_HUMAN Testis-expressed sequence 2 protein OS=Homo sapiens GN=TEX2 PE=1 SV=2
Length = 1127
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 132/303 (43%), Gaps = 38/303 (12%)
Query: 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRV 411
N L+ R+F+D + +IQ LS ++ P ++ E+ T++D G P +
Sbjct: 825 NALLGRIFWDFLGEKYWSDLVSKKIQMKLSKIKLPYFMNELTLTELDMGVAVPKILQAFK 884
Query: 412 LPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLE 471
D +W ++++ Y G ++ +ET++ + +L + EA VG++ +
Sbjct: 885 PYVDHQGLW-IDLEMSYNGSFLMTLETKMNLTKLGKEPLV------EALKVGEIGKEGCR 937
Query: 472 GFEYFGKQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVS---TSGSRWKSILNSIAK 528
+ + + + D P+P G ++ +P + G R I+ + K
Sbjct: 938 PRAFCLADSDEESSSAGSSEEDDA--PEPSG--GDKQLLPGAEGYVGGHRTSKIMRFVDK 993
Query: 529 ---------------------QVSQVPISLSIRVAALRGTLRLHIKPPPSDQLWFGFTSM 567
+VS P+ L++ V RGTL ++I PPP+D++W+GF
Sbjct: 994 ITKSKYFQKATETEFIKKKIEEVSNTPLLLTVEVQECRGTLAVNIPPPPTDRVWYGFRKP 1053
Query: 568 PDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAEKDDWVPR 627
P +E +G+ ++T V ++ + + ++ V+PN + V + M + D PR
Sbjct: 1054 PHVELKARPKLGEREVTLVHVTDWIEKKLEQEFQKVFVMPNMDDVYITIMHSAMD---PR 1110
Query: 628 NVA 630
+ +
Sbjct: 1111 STS 1113
>sp|O94464|YBR6_SCHPO Uncharacterized protein C23G7.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC23G7.06c PE=1 SV=3
Length = 779
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 533 VPISLSIRVAALRGTLRLHIKPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFL 592
VP++L IR+ + G +RL IKPPPS+++W+ F P + +E V ++T+ + F+
Sbjct: 347 VPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLTNNYLINFI 406
Query: 593 INRFKASIRETMVLPNCESVS 613
+ + ET+V+PN ++
Sbjct: 407 TQKLVELVHETIVMPNMNDLA 427
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 321 FPRSKSQSQLSVVSDADSDDKFIVDEATLCW-NLLIFRLFFDAKINVGVKSSIQARIQRA 379
F + L+ +S D+D W N I R+F G KS + ++ +
Sbjct: 225 FDYASVHHNLTALSSPDTD-----------WLNAFIGRIFLGIHKTEGFKSLVVEKLTKK 273
Query: 380 LSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETR 439
LS ++TP + ++ D+D G P V+G++ DI Y G ET
Sbjct: 274 LSRIKTPGIMTDVKVIDVDVGEAIPTVNGLKFESLSNGGELIVSADIWYEGDCSFKAETT 333
Query: 440 LEVR 443
++
Sbjct: 334 ANIK 337
>sp|Q06833|YP091_YEAST Uncharacterized PH domain-containing protein YPR091C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YPR091C PE=1 SV=1
Length = 770
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 516 GSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIKPPPSDQLWFGFTSMPDIEFAME 575
GSR+K +V + LSI++ G L IKPPPS+++W+ F + P ++F +E
Sbjct: 405 GSRFKQ---------REVSLQLSIKIKEFSGPLLFLIKPPPSNRIWYAFRTEPIMDFEIE 455
Query: 576 SSVGDHKITSGQVALFLINRFKASIRETMVLPNCESV 612
V K++ V + ++F +++E++V+P + +
Sbjct: 456 PIVSSSKLSYNVVTNAIKSKFAEAVKESLVVPFMDDI 492
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 325 KSQSQLSVVSDADSDDKFIVDEATLCW-NLLIFRLFFDAKINVGVKSSIQARIQRALSNM 383
K++ L ++ D +S + ++ T W N L+ RLF + + I +I + L+ +
Sbjct: 288 KTKDMLQLIQDINSTE----NQLTTKWLNALLGRLFLSLQQTDTLNKFIHEKICKKLNKI 343
Query: 384 RTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVET----- 438
+TP ++ +++ +D G+ P +L +D++Y G + + + T
Sbjct: 344 KTPGFLDDLVVEKVDVGDSAPLFTSPELLELSPEGSTKIAIDVQYRGNLTIIIATKASIN 403
Query: 439 ---RLEVRELDLHKGI 451
R + RE+ L I
Sbjct: 404 LGSRFKQREVSLQLSI 419
>sp|A8PRS6|MMM1_MALGO Maintenance of mitochondrial morphology protein 1 OS=Malassezia
globosa (strain ATCC MYA-4612 / CBS 7966) GN=MMM1 PE=3
SV=2
Length = 380
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 367 GVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDI 426
K +++ + A+ T ++ ++ TDID G P RV P + E+D
Sbjct: 197 AAKLALERVLNEAMQGRATKHFLDRLVVTDIDMGCRYPTFSHARVRPALHAKSTLVEIDF 256
Query: 427 EYAGGVVLDVETRLEVRELDLHKGIVDAN 455
EY + L ++TR+ + G + AN
Sbjct: 257 EYMDALTLGIDTRMWLHFPQWRFGSLAAN 285
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1
PE=1 SV=3
Length = 1711
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 249 VRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKVPNC 308
++LL + LA++ E++ L G + RK K S+ +KS +S +P+
Sbjct: 1308 IKLLSRDLAKR------EAQRLCGAGGSKRRKTRAKKSKAMKSIKVKEEIKSDSSPLPSE 1361
Query: 309 SGEENAEPLSSTFPRSKSQSQLSVVSDA 336
+E+ + L+ + P SK +S+ SVVSDA
Sbjct: 1362 KSDEDDDKLNDSKPESKDRSKKSVVSDA 1389
>sp|A4JIF6|TTCA_BURVG tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=ttcA PE=3 SV=1
Length = 337
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R+W KRFP +V+N S L
Sbjct: 220 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------REWDKRFPGRVDNMFSALA 271
Query: 158 N 158
N
Sbjct: 272 N 272
>sp|Q13T64|TTCA_BURXL tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
xenovorans (strain LB400) GN=ttcA PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP ++EN + L
Sbjct: 224 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALV------RDWEKRFPGRIENMFNALA 275
Query: 158 N 158
N
Sbjct: 276 N 276
>sp|Q4P8B7|MMM1_USTMA Maintenance of mitochondrial morphology protein 1 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=MMM1 PE=3 SV=2
Length = 579
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 382 NMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLE 441
N T S++ I T+ D G+ P RV P D E+D++Y+ + L ++T+L
Sbjct: 211 NRATSSFLDPIRVTEADFGDAYPIFTNARVRPADDTGRTRIEIDVDYSDQITLAIDTKLL 270
Query: 442 V 442
+
Sbjct: 271 I 271
>sp|B2T6U6|TTCA_BURPP tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ttcA PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP ++EN + L
Sbjct: 224 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALV------RDWEKRFPGRIENMFNALS 275
Query: 158 N 158
N
Sbjct: 276 N 276
>sp|Q6CUC3|MDM12_KLULA Mitochondrial distribution and morphology protein 12
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MDM12
PE=3 SV=1
Length = 305
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 361 DAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYV 406
D +N GVK + +R+Q PSY+ + T+ D G +PP V
Sbjct: 13 DLSVNQGVKDFLNSRLQE----FELPSYVNNLKVTNFDLGTMPPNV 54
>sp|A5DGW8|MMM1_PICGU Maintenance of mitochondrial morphology protein 1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MMM1 PE=3 SV=2
Length = 405
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 351 WNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMR 410
+N+LI + + +I ++ LS P Y+G+I T+ID G+ P R
Sbjct: 173 FNVLIAQTISSFRYEALQSDNIYHSLKEFLSKSELPDYLGDIQLTEIDIGDDFPIFSNCR 232
Query: 411 VLPT-DMNEVWAFEVDIEYAGGVVLDVETRL 440
+ P+ D + ++D++ + + + ++T+L
Sbjct: 233 IRPSKDSHGRLEAKIDVDLSDTLTMGIQTKL 263
>sp|B6K6N3|MMM1_SCHJY Maintenance of mitochondrial morphology protein 1
OS=Schizosaccharomyces japonicus (strain yFS275 /
FY16936) GN=mmm1 PE=3 SV=1
Length = 311
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 499 KPDGLKNNRSTMPVSTSGS-----RWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHI- 552
+PD R+TM +S ++LN + +P+SLS+R+ +RG L ++
Sbjct: 151 QPDDTNGLRATMDLSLEDDIHFVVNTSAVLNVPRPAFAMLPVSLSVRIVHIRGKLSIYFS 210
Query: 553 -KPPPSDQLWFGFTSMPDIEFAME 575
+ + + FT PD + +E
Sbjct: 211 QSSKSAKRAYLNFTFDPDFDMGIE 234
>sp|B2JIL8|TTCA_BURP8 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ttcA PE=3 SV=1
Length = 336
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R+W KRFP +V+N + L
Sbjct: 224 LEKYAELRQFPIIPCNLCGSQPN--LKRAEMKALI------REWDKRFPGRVDNMFNALS 275
Query: 158 N 158
N
Sbjct: 276 N 276
>sp|A9AKB0|TTCA_BURM1 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=ttcA PE=3 SV=1
Length = 331
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R+W KRFP +V+N + L
Sbjct: 220 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------REWDKRFPGRVDNMFNALA 271
Query: 158 N 158
N
Sbjct: 272 N 272
>sp|Q6BH42|MMM1_DEBHA Maintenance of mitochondrial morphology protein 1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=MMM1 PE=3 SV=2
Length = 448
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 348 TLCW-NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYV 406
+L W N+LI + + + +I + L+N P Y+ +I T+ID G+ P
Sbjct: 167 SLDWFNVLIAQTISQLRTEALLSDNIYHSLNEFLTNSDLPDYMDKIKLTEIDIGDDFPIF 226
Query: 407 HGMRVLPT-DMNEVWAFEVDIEYAGGVVLDVETRL 440
R+ + D + ++D++ + + L +ETRL
Sbjct: 227 SNCRIKHSKDRSGRLEAKIDVDLSDTLTLGIETRL 261
>sp|Q39C93|TTCA_BURS3 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia sp.
(strain 383) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVL 156
+ KYA+++ +I + GSQ + LK E+KA+ R+W KRFP +VEN + L
Sbjct: 220 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------REWDKRFPGRVENMFNAL 270
>sp|C4R892|MMM1_PICPG Maintenance of mitochondrial morphology protein 1 OS=Komagataella
pastoris (strain GS115 / ATCC 20864) GN=MMM1 PE=3 SV=1
Length = 454
Score = 34.3 bits (77), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 371 SIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRV--LPTDMNEVWAFEVDIEY 428
+I + ALS+ P Y+ +I T+I+ G+ P R+ P + N + A ++D++
Sbjct: 234 NIYHSLSDALSSSNLPDYLDKITITEINIGDDFPIFSNCRIKHSPNNSNRLEA-KIDVDV 292
Query: 429 AGGVVLDVETRLEVRE 444
A + L +ET+L + +
Sbjct: 293 ADTLTLGIETQLLLNQ 308
>sp|Q63Y74|TTCA_BURPS tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
pseudomallei (strain K96243) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|A3N4V9|TTCA_BURP6 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
pseudomallei (strain 668) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|Q3JWX0|TTCA_BURP1 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
pseudomallei (strain 1710b) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|A3NQK2|TTCA_BURP0 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
pseudomallei (strain 1106a) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|A1V7Z5|TTCA_BURMS tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
mallei (strain SAVP1) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|Q62EN9|TTCA_BURMA tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
mallei (strain ATCC 23344) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|A2S7T4|TTCA_BURM9 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
mallei (strain NCTC 10229) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|A3MND8|TTCA_BURM7 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
mallei (strain NCTC 10247) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|Q2T1V1|TTCA_BURTA tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=ttcA PE=3 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ KYA+++ +I + GSQ + LK E+KA+ R W KRFP +V+N + L
Sbjct: 222 LEKYAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFNALA 273
Query: 158 N 158
N
Sbjct: 274 N 274
>sp|B1YP61|TTCA_BURA4 tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
ambifaria (strain MC40-6) GN=ttcA PE=3 SV=1
Length = 340
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ K+A+++ +I + GSQ + LK E+KA+ R W KRFP +V+N S L
Sbjct: 223 LEKFAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFSALA 274
Query: 158 N 158
N
Sbjct: 275 N 275
>sp|P41995|ODD1_CAEEL Zinc finger protein odd-1 OS=Caenorhabditis elegans GN=odd-1 PE=2
SV=2
Length = 242
Score = 33.9 bits (76), Expect = 5.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 38 ASFSPSPSSLDSSEVLDPQQSLEFAYKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYP 97
AS S P+ + + VL Q + + G W L PE+ K + ++ KKEF+ Y
Sbjct: 75 ASTSTIPAQMTNENVLHLQIQSQL-FSNLGTPWFLNPEQHNKTNNAIRKRPKKEFICKYC 133
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKW--AKRFPIKVE 150
R + K + +I T ++ F + C L K+ AK P K E
Sbjct: 134 ARHFTK-SYNLMIHERTHTNERPFHCETCGKSFRRQDHLRDHKYIHAKEKPHKCE 187
>sp|Q0BB90|TTCA_BURCM tRNA 2-thiocytidine biosynthesis protein TtcA OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=ttcA PE=3 SV=1
Length = 334
Score = 33.9 bits (76), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 98 VRKYAKIKHRALILTSTDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY 157
+ K+A+++ +I + GSQ + LK E+KA+ R W KRFP +V+N S L
Sbjct: 223 LEKFAELREFPIIPCNLCGSQPN--LKRAEMKALI------RDWDKRFPGRVDNMFSALA 274
Query: 158 N 158
N
Sbjct: 275 N 275
>sp|C4YI11|MMM1_CANAW Maintenance of mitochondrial morphology protein 1 OS=Candida
albicans (strain WO-1) GN=MMM1 PE=3 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 286 RPFQDSVLGATSVKSRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVVSDADSDDKFIVD 345
+P D +G +++ K N + E T S +QS++S + + D
Sbjct: 107 KPGLDGAIGVIVKRNKNKKHSNGQFANDGENEDDTSLDS-NQSKISSILEKTYYDVNNHA 165
Query: 346 EATLCW-NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPP 404
+L W N+L+ + + +K +I + L+N + P +I I T+ID G+ P
Sbjct: 166 SESLDWFNVLVAQTISQLRSEALLKDNIYHSLNNFLTNAKLPDFIDTINLTEIDIGDDFP 225
Query: 405 YVHGMRV-LPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRE 444
R+ D+ + A ++D++ + + L + T+L + +
Sbjct: 226 IFSNCRIKYGEDLKRLEA-KIDVDLSDTLTLGIATKLLLNQ 265
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,063,616
Number of Sequences: 539616
Number of extensions: 12164383
Number of successful extensions: 30604
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 30425
Number of HSP's gapped (non-prelim): 323
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)