Query 003631
Match_columns 806
No_of_seqs 145 out of 317
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2238 Uncharacterized conser 100.0 4.7E-89 1E-93 772.3 4.0 751 1-806 6-795 (795)
2 PF10296 DUF2404: Putative int 99.9 3.3E-24 7.1E-29 191.6 12.2 91 352-442 1-91 (91)
3 KOG2238 Uncharacterized conser 99.9 1.5E-22 3.2E-27 232.1 2.8 248 345-618 501-784 (795)
4 KOG3532 Predicted protein kina 99.1 9.9E-11 2.2E-15 133.7 7.2 185 346-620 99-311 (1051)
5 COG5038 Ca2+-dependent lipid-b 99.1 5.1E-10 1.1E-14 134.3 10.6 201 346-620 221-429 (1227)
6 PF00169 PH: PH domain; Inter 96.7 0.014 3.1E-07 49.9 9.6 79 99-184 19-103 (104)
7 cd01250 PH_centaurin Centaurin 96.1 0.023 5E-07 49.3 7.7 74 97-183 16-94 (94)
8 cd01260 PH_CNK Connector enhan 96.0 0.031 6.8E-07 49.9 8.1 72 99-183 22-96 (96)
9 cd01237 Unc112 Unc-112 pleckst 95.6 0.052 1.1E-06 51.4 7.9 78 99-186 22-105 (106)
10 cd01246 PH_oxysterol_bp Oxyste 95.6 0.063 1.4E-06 46.3 7.9 72 97-183 15-91 (91)
11 cd00821 PH Pleckstrin homology 95.2 0.12 2.5E-06 42.8 8.2 74 98-183 17-96 (96)
12 cd01252 PH_cytohesin Cytohesin 94.8 0.18 4E-06 47.5 9.2 82 99-187 18-116 (125)
13 cd01253 PH_beta_spectrin Beta- 93.9 0.24 5.2E-06 44.9 7.5 73 99-183 25-104 (104)
14 cd01219 PH_FGD FGD (faciogenit 93.7 0.38 8.2E-06 44.2 8.6 75 97-185 18-100 (101)
15 smart00233 PH Pleckstrin homol 93.4 0.56 1.2E-05 39.0 8.5 78 97-184 18-101 (102)
16 cd01264 PH_melted Melted pleck 92.5 0.7 1.5E-05 43.4 8.4 76 99-183 21-100 (101)
17 cd01233 Unc104 Unc-104 pleckst 92.4 0.63 1.4E-05 42.5 7.9 75 99-183 20-97 (100)
18 cd00900 PH-like Pleckstrin hom 91.1 1.5 3.3E-05 36.4 8.3 77 97-183 19-99 (99)
19 cd01238 PH_Tec Tec pleckstrin 90.6 1.7 3.6E-05 40.4 8.8 79 97-182 21-105 (106)
20 cd01257 PH_IRS Insulin recepto 90.0 1.4 3.1E-05 41.1 7.8 51 117-180 48-98 (101)
21 cd01244 PH_RasGAP_CG9209 RAS_G 90.0 1.6 3.5E-05 40.5 8.1 77 96-183 20-98 (98)
22 cd01220 PH_CDEP Chondrocyte-de 89.5 0.9 1.9E-05 42.1 6.1 55 118-185 44-98 (99)
23 cd01247 PH_GPBP Goodpasture an 89.0 1.6 3.5E-05 39.6 7.3 69 99-182 17-90 (91)
24 cd01235 PH_SETbf Set binding f 87.4 3.9 8.5E-05 36.4 8.6 78 99-183 17-100 (101)
25 cd01218 PH_phafin2 Phafin2 Pl 87.0 1.1 2.5E-05 42.1 5.1 56 118-186 45-100 (104)
26 cd01251 PH_centaurin_alpha Cen 86.6 3.8 8.1E-05 37.9 8.2 78 99-184 18-100 (103)
27 PF01102 Glycophorin_A: Glycop 86.3 0.9 2E-05 44.2 4.2 29 6-34 67-95 (122)
28 cd01263 PH_anillin Anillin Ple 85.7 2.4 5.3E-05 41.0 6.7 82 99-183 21-122 (122)
29 cd01236 PH_outspread Outspread 82.7 6.4 0.00014 37.1 8.0 94 65-181 1-101 (104)
30 cd01245 PH_RasGAP_CG5898 RAS G 81.5 6.4 0.00014 36.8 7.4 51 120-183 46-98 (98)
31 cd01266 PH_Gab Gab (Grb2-assoc 76.0 11 0.00024 34.9 7.3 76 99-182 21-106 (108)
32 PF15413 PH_11: Pleckstrin hom 75.8 5.7 0.00012 37.4 5.4 31 153-183 82-112 (112)
33 cd01265 PH_PARIS-1 PARIS-1 ple 74.3 16 0.00034 33.3 7.7 70 99-183 19-93 (95)
34 cd01241 PH_Akt Akt pleckstrin 74.2 12 0.00026 34.4 7.0 75 99-184 19-102 (102)
35 cd01243 PH_MRCK MRCK (myotonic 72.8 17 0.00036 35.8 7.7 84 97-181 20-116 (122)
36 cd01230 PH_EFA6 EFA6 Pleckstri 71.2 23 0.0005 34.1 8.4 74 99-185 28-112 (117)
37 PF01034 Syndecan: Syndecan do 69.1 1.7 3.8E-05 38.0 0.3 30 4-33 10-39 (64)
38 PF13782 SpoVAB: Stage V sporu 49.7 20 0.00044 34.6 3.8 30 2-31 54-84 (110)
39 cd01224 PH_Collybistin Collybi 48.9 53 0.0011 31.7 6.4 57 119-182 47-105 (109)
40 PF11240 DUF3042: Protein of u 45.1 33 0.00071 29.4 3.9 31 1-31 1-31 (54)
41 KOG1631 Translocon-associated 43.7 41 0.00088 36.4 5.2 29 3-34 185-213 (261)
42 PRK13707 conjugal transfer pil 43.6 22 0.00047 33.6 2.9 30 2-31 34-63 (101)
43 cd01223 PH_Vav Vav pleckstrin 43.4 98 0.0021 30.3 7.3 99 63-186 4-113 (116)
44 PF03229 Alpha_GJ: Alphavirus 42.4 29 0.00063 34.0 3.6 35 4-38 84-119 (126)
45 PF15405 PH_5: Pleckstrin homo 42.0 24 0.00051 34.7 3.0 38 142-183 97-134 (135)
46 PF08374 Protocadherin: Protoc 40.7 15 0.00033 39.1 1.6 27 3-31 38-64 (221)
47 PF06305 DUF1049: Protein of u 38.0 35 0.00077 28.8 3.1 14 3-16 27-40 (68)
48 PF11216 DUF3012: Protein of u 37.7 35 0.00075 26.5 2.6 26 174-204 4-29 (32)
49 cd01228 PH_BCR-related BCR (br 35.1 38 0.00082 32.1 3.1 23 159-181 69-91 (96)
50 cd01261 PH_SOS Son of Sevenles 31.2 2E+02 0.0044 27.7 7.3 74 99-184 22-109 (112)
51 smart00328 BPI1 BPI/LBP/CETP N 30.3 6.5E+02 0.014 26.3 14.3 26 367-392 9-34 (225)
52 PF07178 TraL: TraL protein; 29.9 57 0.0012 30.1 3.3 30 3-32 29-58 (95)
53 PF01273 LBP_BPI_CETP: LBP / B 29.6 2.7E+02 0.0058 27.0 8.1 26 367-392 4-29 (164)
54 PRK11486 flagellar biosynthesi 29.2 59 0.0013 32.0 3.5 22 10-31 22-43 (124)
55 PF11511 RhodobacterPufX: Intr 28.9 1.1E+02 0.0023 27.5 4.6 26 6-31 27-52 (67)
56 cd01254 PH_PLD Phospholipase D 28.7 1.9E+02 0.004 27.7 6.7 77 99-183 35-121 (121)
57 PF15409 PH_8: Pleckstrin homo 27.4 2.6E+02 0.0057 26.0 7.2 68 99-183 16-88 (89)
58 COG3086 RseC Positive regulato 26.3 1E+02 0.0022 31.4 4.6 22 18-39 112-133 (150)
59 PTZ00108 DNA topoisomerase 2-l 25.2 55 0.0012 43.3 3.2 77 106-211 512-613 (1388)
60 CHL00008 petG cytochrome b6/f 25.0 1.2E+02 0.0027 24.2 3.8 28 1-28 1-29 (37)
61 PF07584 BatA: Aerotolerance r 25.0 78 0.0017 27.9 3.2 17 1-17 1-18 (77)
62 PF06596 PsbX: Photosystem II 25.0 1E+02 0.0022 25.0 3.5 24 3-26 7-30 (39)
63 PRK00665 petG cytochrome b6-f 24.8 1.3E+02 0.0028 24.1 3.8 28 1-28 1-29 (37)
64 PF13373 DUF2407_C: DUF2407 C- 24.3 38 0.00083 33.8 1.2 20 2-29 94-113 (140)
65 PRK01026 tetrahydromethanopter 23.2 98 0.0021 28.4 3.5 25 2-26 50-74 (77)
66 PF02529 PetG: Cytochrome B6-F 21.8 1.4E+02 0.0031 24.0 3.6 25 4-28 5-29 (37)
67 PF06295 DUF1043: Protein of u 20.7 50 0.0011 32.2 1.2 12 2-13 4-15 (128)
68 TIGR02762 TraL_TIGR type IV co 20.6 1.1E+02 0.0023 28.5 3.3 19 3-21 29-47 (95)
No 1
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=100.00 E-value=4.7e-89 Score=772.35 Aligned_cols=751 Identities=37% Similarity=0.554 Sum_probs=626.2
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccCCCccc--hhHHhhhccceEEEeCCCC-
Q 003631 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQ--SLEFAYKKQGYVWVLEPEK- 76 (806)
Q Consensus 1 ~~~-~~~~f~~g~l~l~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~wv~~~~~- 76 (806)
|++ |++|+|+|.++.+-++..+++|+.++|+.++ ++++..+.. +.+..+.+|.| ..+|++++||++||.++++
T Consensus 6 ~~~~fl~~~llg~vt~ls~~~~~~~~l~~~ln~~~-~k~esk~~~--d~~~~d~~~~q~~~~~~s~~pq~~~~i~el~e~ 82 (795)
T KOG2238|consen 6 GFGVFLAGYLLGGVTFLPAELFGLLYLLKHLNYSL-DKIESKSES--DPSTKDFIPRQTRSIDFSINPQGVVKIQELEEQ 82 (795)
T ss_pred cchhhhhhhhhcceeechHHHHHHHHhhhhhhHHH-hhhcccccc--CcccccccccccccccccCCcccchhhhcchhh
Confidence 344 9999999999999999999999999999774 344444444 99999999999 8999999999999999863
Q ss_pred -CCc--cccchHHHhhc---cceeeecceeeeeecCcEEEEeC-CCCCceEEecCCceEEEEecCCccccccccccCeee
Q 003631 77 -VPK--EKFSKEQKKKK---EFLEVYPVRKYAKIKHRALILTS-TDGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKV 149 (806)
Q Consensus 77 -~~k--~k~~ke~k~~k---~~~ev~p~~~~a~ik~~~L~l~~-~dg~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~ 149 (806)
.++ -|.+++|+++. .+++++|+|.++.|+|+.++|.+ .|+.++++-|.||.|+++|.+-++.++|+++||||+
T Consensus 83 ~~~~~ssk~~~~q~K~~~~~~~~~~~~~r~~~~i~d~~t~~~~~~d~~~~~~~l~~~~v~~~s~~~l~v~~~~~~f~iK~ 162 (795)
T KOG2238|consen 83 LLVKMSSKGPKTQKKQRYYHGLENAHPLRNFARIKDHKTALQDQIDPAQTPSFLLGCFVLAKSGSFLPVRKWHKRFPIKV 162 (795)
T ss_pred hhhhhcccCchhhceeeccCCcchhhhhhhhhhhhhhhhhhhcccccccchhhhhhcccccccccchhhhhhcccceeec
Confidence 333 29999999988 79999999999999999999999 699999999999999999999999999999999999
Q ss_pred ecCCc--ccccCceeEEEEeecchhHHHHHHHHHhhhccCcccchh--hHHHHHHHHHHHHhhhccCCcccCCCCCCCCC
Q 003631 150 ENKSS--VLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEW--FTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGE 225 (806)
Q Consensus 150 e~~~~--~iy~~~k~~~~y~et~~eKEsWckalr~as~~~~~~~~w--~~~l~~~f~~Y~s~l~~~~p~~~k~~~~~~~~ 225 (806)
+++.+ .+|.|..++|+|++|+|+|++||++||+|.+.++++..| .+.++.+|+.|.+.++.-||.||||+.|
T Consensus 163 ~s~~~~l~~~~~~~v~~~f~~ts~~k~s~~~~l~~~~~e~~~~~~~~~~~l~k~D~r~~~~~~~vIy~g~mk~~~~---- 238 (795)
T KOG2238|consen 163 ESQISNLVTYIGNQVFLIFFETSWEKESWCKKLRLALDENQERFHWTCSALLKEDTRSLDAKLGVIYPGFMKPSSG---- 238 (795)
T ss_pred ccccceeEeeecceeeeeeeeccccccchhhhhcccCChhHhhhhhhhhhccCccchhhcccCCeeeecccCcccc----
Confidence 99988 899999999999999999999999999999999999999 6999999999999999999999999997
Q ss_pred CCCCCcccccccccccCCCCchhHHHHHHHHHHHhcCCCCccccccccCcccccccccccCCCCCCcccccccccCCCCC
Q 003631 226 SPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKV 305 (806)
Q Consensus 226 ~~~~~~~~e~~dr~~~~d~s~sk~rl~~kkl~rk~s~~~~e~~~~~~~~~~~erk~~~k~~s~~~~~~~~~~~~~~~~~~ 305 (806)
|+.|..|..+ +.+|||||++++|-.+.+..++.-- .+++.+++.. .+|++---++..-
T Consensus 239 -----~s~e~~dk~t---t~s~~Vrl~g~~~~~k~~~k~v~k~------a~~dp~~~~~--~~q~s~~~~~s~i------ 296 (795)
T KOG2238|consen 239 -----FSSENLDKGT---THSSKVRLEGSMFSFKRSDKNVDKE------ARDDPTTNSS--LSQNSYSNGSSTI------ 296 (795)
T ss_pred -----CCcccccccc---ccceEEEecccceeEecccccccch------hhcccccccc--ccccccccCCCce------
Confidence 8999999766 3579999999999998855443211 2556665542 2333311001000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccc---cCCCCCCcCCCchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHcC
Q 003631 306 PNCSGEENAEPLSSTFPRSKSQSQLSVVS---DADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSN 382 (806)
Q Consensus 306 ~~~s~~~~~~~s~~~~s~~~~~~~ls~~~---d~~~~e~~~~dEst~WlNaLLgRLFfD~~rs~~~~d~Ik~KIQkKLnk 382 (806)
.-...-.+...|..+..++...+ |.|+..+...|++|.|+|++++|+|+++.+...+.+.++++||+.+++
T Consensus 297 ------~l~pk~~a~~~~~~tk~pi~ir~~sh~~ds~skte~d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~ 370 (795)
T KOG2238|consen 297 ------SLDPKRLANNRHWKTKVPIQIRFGSHDRDSESKTETDEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSK 370 (795)
T ss_pred ------ecCchhhhccccccccCceEEEecccccccccccccchhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhc
Confidence 00111223344445555554444 455666777799999999999999999999966999999999999999
Q ss_pred CCCCCCCCcEEEEEeecCCCCceeecccccccCCCCceEEEEeeEEeCCeEEEEEEEEEeeeccccccccccCccccccC
Q 003631 383 MRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAV 462 (806)
Q Consensus 383 iklPsFI~eI~VtdLdLG~s~P~Is~vRvp~lD~~G~wa~ElDVeY~Gg~~LtIETkLnL~~l~lqk~i~~sn~~~s~s~ 462 (806)
+|+|.|++++.+..++.|+.+|+|++.++.++.++|.|+++.||.|.|+.++.|+|+|+.+....+++++..... +...
T Consensus 371 ~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~di~y~~d~~~~i~~~v~~~e~~~~~~ie~~~~q-p~k~ 449 (795)
T KOG2238|consen 371 MRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEIDIEYRGDLTIIIETRVDIREGSRQKGIEESLLQ-PKKI 449 (795)
T ss_pred cccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccceeeccccccccccccchhhhhhcchhhhhhhC-cchh
Confidence 999999999999999999999999999999999999999999999999999999999999998888888776554 6677
Q ss_pred CCCccccchhhhh-cccccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCchhhhhh-hhcccceeecEEEEEE
Q 003631 463 GDVSSDLLEGFEY-FGKQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILN-SIAKQVSQVPISLSIR 540 (806)
Q Consensus 463 g~~~sdlle~ie~-fG~~f~~Se~s~ds~e~k~~g~~k~d~~~~~~st~~~~~~~sRfk~iv~-sIAeqVS~VPL~LsV~ 540 (806)
+.+.+.+++++.+ |-+++.+...+.+.+....+..-. ++.+.+..+...++..++|+++|. +|+.++++.|+.|.+.
T Consensus 450 ~~~~s~l~~~~~d~~~kq~~~~~~t~~~~~~~~~~~vs-~~sK~~~~t~~~~~~~s~~~~~L~~ri~~~f~~d~~~ls~~ 528 (795)
T KOG2238|consen 450 ELVKSPLLEGLKDPFEKQIWVPFSTVSAQDVESESIVS-DESKLSEGTKTISAEKSKWKSALKERIVEQFSDDPIWLSIV 528 (795)
T ss_pred cccCchhhhhccchhhhceeeeccccCCCccccccccc-ccccCCCCCcchhhhhhhhHHHhhhheeecccCCceeecch
Confidence 8888999888877 778777766666655544322111 344555666666788999998765 6999999999999999
Q ss_pred EEEEEEEEEEEecCCCCCcEEEEeecCCceEEEEEecccccccChhhHHHHHHHHHHHHHHhhcccCCCCccccccccCC
Q 003631 541 VAALRGTLRLHIKPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAE 620 (806)
Q Consensus 541 V~sLsGtLrV~IpPPPSDRLWygF~~~P~LeLeieP~VGeR~It~~~It~~IenKLK~~I~e~lVLPNmdDi~LP~M~s~ 620 (806)
...++|+|..+..|||++++|+||..+|+|.....|.||++.+++.+++....++++..+++.|+||+|++ +|||.++
T Consensus 529 ~s~lr~kl~~~~~P~~~~~l~~~~ta~pdi~~~~~~~v~e~~~~~~d~~ms~~~~~~~~~rt~~nL~~l~s--~p~v~ae 606 (795)
T KOG2238|consen 529 SSSLRGKLWEHMKPPPSDQLWFGFTAAPDILQALASKVGEHKITGGDVAMSYIGRFLTALRTKMNLPKLQS--IPWVAAE 606 (795)
T ss_pred hhhhhheehhccCCchhhhhhhccccchhHHHHhhhhhcccccccchHHHHHHhhHHHHHHhhhccccccc--ccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCccCCCCCceeecCCCCCCCcchhhhcccCcccccccccccccccCCcchhhccCCCCCCCCcCCC-----------
Q 003631 621 KDDWVPRNVAPFIWLNHEANSDQVPACEAFSSQTTEVKTTMEATSVTSIDQPEQKNQNSKNLDCYERPD----------- 689 (806)
Q Consensus 621 ~ddwvp~~~~pfiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~pe~~~~~~~~~~~~~~~~----------- 689 (806)
+++||.+..++|+|+++ ++.++.++.+.++..|++++...|.+..+|.+..++.|+++..+.+++..
T Consensus 607 k~~~V~r~~at~~~~~~--sd~d~~ss~es~s~~Dk~~~~~~~~~~~~~E~t~~~~q~~kI~~~vd~~~s~s~~~qka~~ 684 (795)
T KOG2238|consen 607 KDDWVTRTTATFRDLSS--SDSDTPSSKESSSSEDKPPRPFGDNVGSDMEGTVNIDQKKKIDDSVDERESQSESFQKAAK 684 (795)
T ss_pred cccceeeecccchhccc--cccCCccccccccccccCCCCccccccccccccccccccchhhhhhhhccccchhhccchh
Confidence 99999999999999999 46777888889999999999999988889999999999977654443311
Q ss_pred CCccccccCCCCCCCccccCchhhhhhccccccccc--hH-HHHhhhccc-c-cccCCCCCCCcccccccccccccccc-
Q 003631 690 TVSKVTSIPSTSSSTPAIQNSKFLRELRTPLLEIDN--SQ-EACQQNKEE-L-SECQSPSATSSTQSEKQMIGIEEDDS- 763 (806)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~pll~~~~--~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 763 (806)
....... +.-.|++|.+.++..+||+++||++|.- ++ +..++.+.. . --.|++. + ...+++.+++
T Consensus 685 ~~ai~r~-i~~~s~tpL~~~~~~vEe~k~~l~~N~p~ppsd~~~~~~r~~~~~~~k~sps----~----g~~s~~l~~~~ 755 (795)
T KOG2238|consen 685 AEAIRRP-IEDVSNTPLVLLDPEVEELKGPLTENIPPPPSDRNWRGFRRAPIEKLKQSPS----S----GDRSVELDDVD 755 (795)
T ss_pred HHhhhcC-ccccCCCchhccChhhhhhcCCCcCCCCCCchhhhhhcccccchhhhccCCc----c----CCccccccccc
Confidence 1122222 5678999999999999999999998443 33 233333331 1 1124432 0 2234556665
Q ss_pred -cccCccc-hhhhchhhhhhhHHHHHHHHhHHHHhhhhhhhccCC
Q 003631 764 -RLKKPGR-RARMLDLGKNMKEKLEEKRRHIEEKGRHIVEKMRGP 806 (806)
Q Consensus 764 -~~kk~~r-r~~~~~~~~~~~~k~ee~~r~~~ek~~~~v~km~~~ 806 (806)
..||++| +++|++++++|+|++|++|| ++.+|||||||
T Consensus 756 ~~ikk~~rq~~q~~~~~p~m~e~~e~v~~-----~~p~vek~r~p 795 (795)
T KOG2238|consen 756 PWIKKKLRQSAQKFDVKPNMDEKNEPVRR-----SDPPVEKMRGP 795 (795)
T ss_pred HHHHHHHHhhhhccccCcccchhcccccc-----CCCcchhccCC
Confidence 8889999 99999999999999999999 99999999998
No 2
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.91 E-value=3.3e-24 Score=191.58 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHcCCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCceEEEEeeEEeCC
Q 003631 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGG 431 (806)
Q Consensus 352 NaLLgRLFfD~~rs~~~~d~Ik~KIQkKLnkiklPsFI~eI~VtdLdLG~s~P~Is~vRvp~lD~~G~wa~ElDVeY~Gg 431 (806)
|+|++|+||++++++.|.++|+++||++|+++++|+||++|.|++++||+++|.|+++++++++++|.+.+|+||+|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999997779999999999
Q ss_pred eEEEEEEEEEe
Q 003631 432 VVLDVETRLEV 442 (806)
Q Consensus 432 ~~LtIETkLnL 442 (806)
++|+|+|+|++
T Consensus 81 ~~l~l~t~l~~ 91 (91)
T PF10296_consen 81 FSLTLETKLNI 91 (91)
T ss_pred eEEEEEEEEEC
Confidence 99999999985
No 3
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=99.85 E-value=1.5e-22 Score=232.09 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=188.3
Q ss_pred CchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHcCCCCCCCCCcEEEEEeecCCCCceeeccccccc-CCCCceEEE
Q 003631 345 DEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPT-DMNEVWAFE 423 (806)
Q Consensus 345 dEst~WlNaLLgRLFfD~~rs~~~~d~Ik~KIQkKLnkiklPsFI~eI~VtdLdLG~s~P~Is~vRvp~l-D~~G~wa~E 423 (806)
.+...|.|+|..|+||+|.+++.|.+....+||.+|..+.+|+|++.+... |.++|-|.++-.+.+ ++.|+| .+
T Consensus 501 ~~~s~~~~~L~~ri~~~f~~d~~~ls~~~s~lr~kl~~~~~P~~~~~l~~~----~ta~pdi~~~~~~~v~e~~~~~-~d 575 (795)
T KOG2238|consen 501 AEKSKWKSALKERIVEQFSDDPIWLSIVSSSLRGKLWEHMKPPPSDQLWFG----FTAAPDILQALASKVGEHKITG-GD 575 (795)
T ss_pred hhhhhhHHHhhhheeecccCCceeecchhhhhhheehhccCCchhhhhhhc----cccchhHHHHhhhhhccccccc-ch
Confidence 567789999999999999999999999999999999999999999999988 899999999999988 999999 89
Q ss_pred EeeEEeCCeEEEEEEEEEeeeccccccccccC--c-c-ccccC---CCCccccchhhhhcccccccCCCCcCCCCCCCCC
Q 003631 424 VDIEYAGGVVLDVETRLEVRELDLHKGIVDAN--S-E-EAGAV---GDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQG 496 (806)
Q Consensus 424 lDVeY~Gg~~LtIETkLnL~~l~lqk~i~~sn--~-~-~s~s~---g~~~sdlle~ie~fG~~f~~Se~s~ds~e~k~~g 496 (806)
+.+.|-|+|.++++|++||..+...-.++... + + .+++. ...++|..++. +.
T Consensus 576 ~~ms~~~~~~~~~rt~~nL~~l~s~p~v~aek~~~V~r~~at~~~~~~sd~d~~ss~---------------------es 634 (795)
T KOG2238|consen 576 VAMSYIGRFLTALRTKMNLPKLQSIPWVAAEKDDWVTRTTATFRDLSSSDSDTPSSK---------------------ES 634 (795)
T ss_pred HHHHHHhhHHHHHHhhhcccccccccceeeecccceeeecccchhccccccCCcccc---------------------cc
Confidence 99999999999999999997664311111100 0 0 00000 00011111111 11
Q ss_pred CCCCCCCC-CCC------CCCC-ccCCCCchhhhhhh-------------------hcccceeecEEEE-EEEEEEEEEE
Q 003631 497 DPKPDGLK-NNR------STMP-VSTSGSRWKSILNS-------------------IAKQVSQVPISLS-IRVAALRGTL 548 (806)
Q Consensus 497 ~~k~d~~~-~~~------st~~-~~~~~sRfk~iv~s-------------------IAeqVS~VPL~Ls-V~V~sLsGtL 548 (806)
.+++|.+. .+. ..+. .....+++-.+|++ --+.++++||.+. ++|..++|+|
T Consensus 635 ~s~~Dk~~~~~~~~~~~~~E~t~~~~q~~kI~~~vd~~~s~s~~~qka~~~~ai~r~i~~~s~tpL~~~~~~vEe~k~~l 714 (795)
T KOG2238|consen 635 SSSEDKPPRPFGDNVGSDMEGTVNIDQKKKIDDSVDERESQSESFQKAAKAEAIRRPIEDVSNTPLVLLDPEVEELKGPL 714 (795)
T ss_pred ccccccCCCCccccccccccccccccccchhhhhhhhccccchhhccchhHHhhhcCccccCCCchhccChhhhhhcCCC
Confidence 11111100 000 0000 00111122112221 1246889999998 9999999999
Q ss_pred EEEecCCCCCcEEEEeecCCceEEEEEecccccccChhhHHHHHHHHHHHHHHhhcccCCCCcccccccc
Q 003631 549 RLHIKPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMS 618 (806)
Q Consensus 549 rV~IpPPPSDRLWygF~~~P~LeLeieP~VGeR~It~~~It~~IenKLK~~I~e~lVLPNmdDi~LP~M~ 618 (806)
.+||||||+||+||||+..|...+..+|.+|++.+++.++..||+.++++.++...|.|||+++.+|+|.
T Consensus 715 ~~N~p~ppsd~~~~~~r~~~~~~~k~sps~g~~s~~l~~~~~~ikk~~rq~~q~~~~~p~m~e~~e~v~~ 784 (795)
T KOG2238|consen 715 TENIPPPPSDRNWRGFRRAPIEKLKQSPSSGDRSVELDDVDPWIKKKLRQSAQKFDVKPNMDEKNEPVRR 784 (795)
T ss_pred cCCCCCCchhhhhhcccccchhhhccCCccCCcccccccccHHHHHHHHhhhhccccCcccchhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 4
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=99.10 E-value=9.9e-11 Score=133.72 Aligned_cols=185 Identities=18% Similarity=0.351 Sum_probs=148.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHcCC----CCCCCCCcEEEEEeecCCCCceeecccccccCCCCce-
Q 003631 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNM----RTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVW- 420 (806)
Q Consensus 346 Est~WlNaLLgRLFfD~~rs~~~~d~Ik~KIQkKLnki----klPsFI~eI~VtdLdLG~s~P~Is~vRvp~lD~~G~w- 420 (806)
..|..+|.++..+|.+++.+...+.|+.+|++..++++ .....++.+.+.|+.+|+.+|-+++.++-.++....+
T Consensus 99 S~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l 178 (1051)
T KOG3532|consen 99 SSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFL 178 (1051)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHH
Confidence 45777899999999999999999999999999888775 2467999999999999999999999887554322211
Q ss_pred -----------------------EEEEeeEEeCCeEEEEEEEEEeeeccccccccccCccccccCCCCccccchhhhhcc
Q 003631 421 -----------------------AFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFG 477 (806)
Q Consensus 421 -----------------------a~ElDVeY~Gg~~LtIETkLnL~~l~lqk~i~~sn~~~s~s~g~~~sdlle~ie~fG 477 (806)
.+=+|+.|.|+|+-.|....-
T Consensus 179 ~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~------------------------------------ 222 (1051)
T KOG3532|consen 179 KYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTI------------------------------------ 222 (1051)
T ss_pred HhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccc------------------------------------
Confidence 011244444444322110000
Q ss_pred cccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCccCCCCchhhhhhhhcccceeecEEEEEEEEEEEEEEEEEecCCCC
Q 003631 478 KQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIKPPPS 557 (806)
Q Consensus 478 ~~f~~Se~s~ds~e~k~~g~~k~d~~~~~~st~~~~~~~sRfk~iv~sIAeqVS~VPL~LsV~V~sLsGtLrV~IpPPPS 557 (806)
+.---+++|+|++++|-+++.+-..|.
T Consensus 223 -----------------------------------------------------~~kk~S~~iKl~~l~Gm~r~~~~r~py 249 (1051)
T KOG3532|consen 223 -----------------------------------------------------IAKKASLSVKITKLTGMVRVILSRQPY 249 (1051)
T ss_pred -----------------------------------------------------cccCCceeEEEEEeccceeEEEEeccc
Confidence 011137899999999999999999999
Q ss_pred CcEEEEeecCCceEEEEEecccccccChhhHHHHHHHHHHHHHHhhcccCCCCccccccccCC
Q 003631 558 DQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAE 620 (806)
Q Consensus 558 DRLWygF~~~P~LeLeieP~VGeR~It~~~It~~IenKLK~~I~e~lVLPNmdDi~LP~M~s~ 620 (806)
.+|-++|++.|.++..+++.+-.|++.. .|.+.|++.++..+++.+.+||+.-.++||+.+.
T Consensus 250 ~hw~~sf~G~P~~e~di~s~~qg~qLQ~-~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~ 311 (1051)
T KOG3532|consen 250 HHWTFSFVGQPIFETDINSQIQGHQLQR-LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNP 311 (1051)
T ss_pred eeeeeeeccCchhhhhhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhccCcchhhhccccccCc
Confidence 9999999999999999999999999863 7999999999999999999999999999999765
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.05 E-value=5.1e-10 Score=134.35 Aligned_cols=201 Identities=15% Similarity=0.379 Sum_probs=151.8
Q ss_pred chhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHcCCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCceEEEEe
Q 003631 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVD 425 (806)
Q Consensus 346 Est~WlNaLLgRLFfD~~rs~~~~d~Ik~KIQkKLnkiklPsFI~eI~VtdLdLG~s~P~Is~vRvp~lD~~G~wa~ElD 425 (806)
|++.|||.+|.++ |-+ -++.+...|.+.+...|.. -+|+||+.+.|.+++||..+|.|..||-.+-.+..+..+|++
T Consensus 221 ESveWLNtfL~Kf-W~i-~eP~iSqqV~dqvn~~la~-~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 221 ESVEWLNTFLQKF-WPI-IEPSISQQVVDQVNQQLAE-AIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred hHHHHHHHHHHhh-eec-cChHHHHHHHHHHHHHHHh-hcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 8999999999994 665 4899999999999999999 689999999999999999999999999655444555557777
Q ss_pred eEEeCCeEEEEEEEEEeeeccccccccccCccccccCCCCccccchhhhhcccccccCCCCcCCCCCCCCCCCCCCCCCC
Q 003631 426 IEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPDGLKN 505 (806)
Q Consensus 426 VeY~Gg~~LtIETkLnL~~l~lqk~i~~sn~~~s~s~g~~~sdlle~ie~fG~~f~~Se~s~ds~e~k~~g~~k~d~~~~ 505 (806)
+.+.= .++.++ .+- .. -... ++|
T Consensus 298 ~sftP---------~d~sD~--------------------t~~---~~---r~~v----------------n~k------ 320 (1227)
T COG5038 298 FSFTP---------HDISDV--------------------TAT---SA---RASV----------------NPK------ 320 (1227)
T ss_pred eccCc---------cchhhh--------------------hhH---HH---hhhc----------------Ccc------
Confidence 66541 111000 000 00 0000 000
Q ss_pred CCCCCCccCCCCchhhhhhhhcccceeecEEEEEEEEEEEEEEEEEecC----CCCCcEEEEeecCCceEEEEEeccccc
Q 003631 506 NRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIKP----PPSDQLWFGFTSMPDIEFAMESSVGDH 581 (806)
Q Consensus 506 ~~st~~~~~~~sRfk~iv~sIAeqVS~VPL~LsV~V~sLsGtLrV~IpP----PPSDRLWygF~~~P~LeLeieP~VGeR 581 (806)
.+++-+++..+...++-+.|+...|.|+|||.+.- |--.-+-|+|.+.|+++|.+.|.=|+.
T Consensus 321 --------------IsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~ 386 (1227)
T COG5038 321 --------------ISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDF 386 (1227)
T ss_pred --------------eeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCc
Confidence 01222233333447788889999999999999832 445679999999999999999987663
Q ss_pred c----cChhhHHHHHHHHHHHHHHhhcccCCCCccccccccCC
Q 003631 582 K----ITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAE 620 (806)
Q Consensus 582 ~----It~~~It~~IenKLK~~I~e~lVLPNmdDi~LP~M~s~ 620 (806)
- +.+|-|+.||.+.|...+.-.+|-||+-+|.||-|++.
T Consensus 387 ~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~ 429 (1227)
T COG5038 387 FGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAG 429 (1227)
T ss_pred cceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcc
Confidence 2 36899999999999999999999999999999999887
No 6
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.70 E-value=0.014 Score=49.91 Aligned_cols=79 Identities=16% Similarity=0.343 Sum_probs=61.1
Q ss_pred eeeeeecCcEEEEeCCCCC------ceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchh
Q 003631 99 RKYAKIKHRALILTSTDGS------QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg~------~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
++|+.|.+..|++-..+.. ...|+|.+|.|......... ..-...+-+.|.++.. +.++|+++|-=|
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~-~~~~~~~~f~i~~~~~------~~~~~~~~s~~~ 91 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFL-SNKKRKNCFEITTPNG------KSYLFSAESEEE 91 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTST-STSSSSSEEEEEETTS------EEEEEEESSHHH
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccc-cccCCCcEEEEEeCCC------cEEEEEcCCHHH
Confidence 6899999999999877652 25899999998888776421 2233445555554443 799999999999
Q ss_pred HHHHHHHHHhhh
Q 003631 173 KEAWCKALRLAS 184 (806)
Q Consensus 173 KEsWckalr~as 184 (806)
+..|.++|+.|.
T Consensus 92 ~~~W~~~i~~~~ 103 (104)
T PF00169_consen 92 RKRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999885
No 7
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.15 E-value=0.023 Score=49.32 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=56.5
Q ss_pred cceeeeeecCcEEEEeCCC-----CCceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecch
Q 003631 97 PVRKYAKIKHRALILTSTD-----GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~d-----g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~ 171 (806)
=.+||..|+++.|++.... .....|+|.+|.|..++... .++|.+.|..+ ++++||.++|.-
T Consensus 16 W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~-------~~~~~f~a~s~~ 82 (94)
T cd01250 16 WKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQP------DRRFCFEVISP-------TKTWHFQADSEE 82 (94)
T ss_pred ceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCcccc------CCceEEEEEcC-------CcEEEEECCCHH
Confidence 3468899999999998432 23358999999887665432 34677777633 378999999999
Q ss_pred hHHHHHHHHHhh
Q 003631 172 EKEAWCKALRLA 183 (806)
Q Consensus 172 eKEsWckalr~a 183 (806)
|-+.|-.||+.|
T Consensus 83 ~~~~Wi~al~~~ 94 (94)
T cd01250 83 ERDDWISAIQES 94 (94)
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 8
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.03 E-value=0.031 Score=49.91 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=55.5
Q ss_pred eeeeeecCcEEEEeCCCCC---ceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHHH
Q 003631 99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg~---~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEs 175 (806)
+|+..|+|..|+.-..+.. ...|+|.||.|..+... + |.|=+++.++. .+++||.+||-=|-..
T Consensus 22 krwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~-----~--k~~~F~I~~~~------~~~~~f~a~s~~e~~~ 88 (96)
T cd01260 22 RRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEV-----K--KKYAFKVCHPV------YKSFYFAAETLDDLSQ 88 (96)
T ss_pred eEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhc-----C--CceEEEECCCC------CcEEEEEeCCHHHHHH
Confidence 5789999999999855442 34899999988765321 1 56667776443 3789999999999999
Q ss_pred HHHHHHhh
Q 003631 176 WCKALRLA 183 (806)
Q Consensus 176 Wckalr~a 183 (806)
|-.|||.|
T Consensus 89 Wi~ai~~~ 96 (96)
T cd01260 89 WVNHLITA 96 (96)
T ss_pred HHHHHHhC
Confidence 99999976
No 9
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.59 E-value=0.052 Score=51.40 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=60.5
Q ss_pred eeeeeecCcEEEEeCCCC-----CceEEecCCceEE-EEecCCccccccccccCeeeecCCcccccCceeEEEEeecchh
Q 003631 99 RKYAKIKHRALILTSTDG-----SQTSFPLKGCEIK-AVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg-----~~~~i~L~~C~v~-avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
+++..++|..|+.--.++ ....|.|.||+|. .|..+. ++|=|++..++.+ |.+++||=.||-=+
T Consensus 22 rrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~-------~kf~I~l~~ps~~---~~r~y~l~cdsEeq 91 (106)
T cd01237 22 QYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQ-------QKFHIKLLIPTAE---GMNEVWLRCDNEKQ 91 (106)
T ss_pred eEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccc-------cceEEEEecCCcc---CCeEEEEECCCHHH
Confidence 467899999997652222 2357799999996 232222 2589999988877 88999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 003631 173 KEAWCKALRLASCE 186 (806)
Q Consensus 173 KEsWckalr~as~~ 186 (806)
=+.|-+|+|+||.+
T Consensus 92 ya~Wmaa~rlas~g 105 (106)
T cd01237 92 YAKWMAACRLASKG 105 (106)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999975
No 10
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.57 E-value=0.063 Score=46.34 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=53.3
Q ss_pred cceeeeeecCcEEEEeCCCC-----CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecch
Q 003631 97 PVRKYAKIKHRALILTSTDG-----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~dg-----~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~ 171 (806)
..++|..|+++.|++-.... ...+|.|.+|.|.. . +++ .|=+.|..+ +.+.+||.++|.=
T Consensus 15 W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~-~----~~~----~~~F~i~~~------~~~~~~~~a~s~~ 79 (91)
T cd01246 15 WQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISE-D----DSD----DKCFTIDTG------GDKTLHLRANSEE 79 (91)
T ss_pred ceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEE-C----CCC----CcEEEEEcC------CCCEEEEECCCHH
Confidence 45789999999999965532 23689999998653 2 111 344555432 3389999999999
Q ss_pred hHHHHHHHHHhh
Q 003631 172 EKEAWCKALRLA 183 (806)
Q Consensus 172 eKEsWckalr~a 183 (806)
|++.|-.|||.|
T Consensus 80 e~~~Wi~al~~a 91 (91)
T cd01246 80 ERQRWVDALELA 91 (91)
T ss_pred HHHHHHHHHHhC
Confidence 999999999976
No 11
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.22 E-value=0.12 Score=42.78 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=55.9
Q ss_pred ceeeeeecCcEEEEeCCCC------CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecch
Q 003631 98 VRKYAKIKHRALILTSTDG------SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (806)
Q Consensus 98 ~~~~a~ik~~~L~l~~~dg------~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~ 171 (806)
.++|..|.+..|.+..... ....|+|.+|.|..+.... ...|-+.|..... +.++|+++|.-
T Consensus 17 ~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~~------~~~~~~~~s~~ 84 (96)
T cd00821 17 KRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS------GRKNCFEIRTPDG------RSYLLQAESEE 84 (96)
T ss_pred cEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC------CCCcEEEEecCCC------cEEEEEeCCHH
Confidence 4678888888888776532 2368999999998876655 3445566653322 89999999999
Q ss_pred hHHHHHHHHHhh
Q 003631 172 EKEAWCKALRLA 183 (806)
Q Consensus 172 eKEsWckalr~a 183 (806)
|.+.|..+|+.|
T Consensus 85 ~~~~W~~~l~~~ 96 (96)
T cd00821 85 EREEWIEALQSA 96 (96)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 12
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.81 E-value=0.18 Score=47.55 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=59.3
Q ss_pred eeeeeecCcEEEEeCCCC-C--ceEEecCCceEEEEecCCccccccccccCeeeecCCc--------------ccccCce
Q 003631 99 RKYAKIKHRALILTSTDG-S--QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSS--------------VLYNGSK 161 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg-~--~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~--------------~iy~~~k 161 (806)
+|+..|.++.|+.-..+. . .-.|+|.+|.|..+-.. . ++|...+..++. +++...+
T Consensus 18 kRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~---~----~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 90 (125)
T cd01252 18 RRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVEDP---S----KPFCFELFSPSDKQQIKACKTESDGRVVEGNHS 90 (125)
T ss_pred eEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEcccC---C----CCeeEEEECCccccccccccccccccccccCce
Confidence 578889999998876532 2 25899999998877431 1 344455554443 4445557
Q ss_pred eEEEEeecchhHHHHHHHHHhhhccC
Q 003631 162 LIYIFLETSWEKEAWCKALRLASCED 187 (806)
Q Consensus 162 ~~~~y~et~~eKEsWckalr~as~~~ 187 (806)
++||.++|.-|...|-.||+.+...+
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 77799999999999999999987654
No 13
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.85 E-value=0.24 Score=44.88 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=53.0
Q ss_pred eeeeeecCcEEEEeCCCCCc-------eEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecch
Q 003631 99 RKYAKIKHRALILTSTDGSQ-------TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg~~-------~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~ 171 (806)
++++.|++..|++-...+.. ..|.|.||.|.-+.... . ++|-+.|..+ +.+++||-+++.-
T Consensus 25 ~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~--k----~~~~F~l~~~------~~~~~~f~a~s~e 92 (104)
T cd01253 25 NVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYT--K----KKHVFRLRLP------DGAEFLFQAPDEE 92 (104)
T ss_pred eEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcc--c----CceEEEEEec------CCCEEEEECCCHH
Confidence 57899999999777433211 27889999887665432 2 3355555532 5588999999999
Q ss_pred hHHHHHHHHHhh
Q 003631 172 EKEAWCKALRLA 183 (806)
Q Consensus 172 eKEsWckalr~a 183 (806)
|-..|..||++|
T Consensus 93 ~~~~Wi~aL~~~ 104 (104)
T cd01253 93 EMSSWVRALKSA 104 (104)
T ss_pred HHHHHHHHHhcC
Confidence 999999999975
No 14
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.72 E-value=0.38 Score=44.17 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=52.8
Q ss_pred cceeeeeecCcEEEEeCC----CCCc----eEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEee
Q 003631 97 PVRKYAKIKHRALILTST----DGSQ----TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~----dg~~----~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~e 168 (806)
|-.||..|-+..|+...+ .|.. ..|+|.+|.|...+ +.. ..+-..|.++. +.+++|++
T Consensus 18 ~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~-----~~~--~~~~F~I~~~~-------rsf~l~A~ 83 (101)
T cd01219 18 TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD-----NLE--RPHSFLVSGKQ-------RCLELQAR 83 (101)
T ss_pred ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC-----CCC--cCceEEEecCC-------cEEEEEcC
Confidence 344788887778877653 1221 46999999998653 111 22345555443 79999999
Q ss_pred cchhHHHHHHHHHhhhc
Q 003631 169 TSWEKEAWCKALRLASC 185 (806)
Q Consensus 169 t~~eKEsWckalr~as~ 185 (806)
|.-||+.|.+||.-|..
T Consensus 84 s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 84 TQKEKNDWVQAIFSIID 100 (101)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998753
No 15
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=93.42 E-value=0.56 Score=39.04 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=56.5
Q ss_pred cceeeeeecCcEEEEeCCCC------CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecc
Q 003631 97 PVRKYAKIKHRALILTSTDG------SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~dg------~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~ 170 (806)
.-++|..|.++.|.+-.... ....|+|.+|.|.......... ..+-+.|..++. +.++|+++|.
T Consensus 18 ~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~----~~~~f~l~~~~~------~~~~f~~~s~ 87 (102)
T smart00233 18 WKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAK----KPHCFEIKTADR------RSYLLQAESE 87 (102)
T ss_pred ceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCC----CceEEEEEecCC------ceEEEEcCCH
Confidence 45678999999998876532 2368999999777665543211 234555554333 6999999999
Q ss_pred hhHHHHHHHHHhhh
Q 003631 171 WEKEAWCKALRLAS 184 (806)
Q Consensus 171 ~eKEsWckalr~as 184 (806)
=|+..|-.+|+.|+
T Consensus 88 ~~~~~W~~~i~~~~ 101 (102)
T smart00233 88 EEREEWVDALRKAI 101 (102)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999875
No 16
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.46 E-value=0.7 Score=43.36 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=54.0
Q ss_pred eeeeeecCcEEEEeCCCC----CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHH
Q 003631 99 RKYAKIKHRALILTSTDG----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg----~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKE 174 (806)
||+=.|+|..|+-.-..+ ...+|+|..|..+-...... |+ +-.|-..| |...+++|||++||.=|+|
T Consensus 21 rRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~--~~--~~~~~~Fe-----i~tp~rt~~l~A~se~e~e 91 (101)
T cd01264 21 TRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR--RD--RSLPKAFE-----IFTADKTYILKAKDEKNAE 91 (101)
T ss_pred eEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccc--cc--cccCcEEE-----EEcCCceEEEEeCCHHHHH
Confidence 478889998886552322 22599999999766443332 11 22355666 5557799999999999999
Q ss_pred HHHHHHHhh
Q 003631 175 AWCKALRLA 183 (806)
Q Consensus 175 sWckalr~a 183 (806)
+|-++|.-|
T Consensus 92 ~WI~~i~~a 100 (101)
T cd01264 92 EWLQCLNIA 100 (101)
T ss_pred HHHHHHHhh
Confidence 999999766
No 17
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=92.39 E-value=0.63 Score=42.51 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=52.8
Q ss_pred eeeeeecCcEEEEeCCCCC---ceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHHH
Q 003631 99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg~---~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEs 175 (806)
+|+..|++..|+.--.++. ..+|+|.+|.|..+....... .+ |-+.+ |+..++++||.+++--|.+.
T Consensus 20 kRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~---~~--~~~F~-----I~t~~rt~~~~A~s~~e~~~ 89 (100)
T cd01233 20 RRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMV---KG--PNTFA-----VCTKHRGYLFQALSDKEMID 89 (100)
T ss_pred EEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhc---CC--CcEEE-----EECCCCEEEEEcCCHHHHHH
Confidence 5889999999987655432 248999999888654332111 11 22222 34468899999999999999
Q ss_pred HHHHHHhh
Q 003631 176 WCKALRLA 183 (806)
Q Consensus 176 Wckalr~a 183 (806)
|-+||+..
T Consensus 90 Wi~ai~~~ 97 (100)
T cd01233 90 WLYALNPL 97 (100)
T ss_pred HHHHhhhh
Confidence 99999864
No 18
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=91.08 E-value=1.5 Score=36.44 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=54.1
Q ss_pred cceeeeeecCcEEEEeCCCCCce----EEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchh
Q 003631 97 PVRKYAKIKHRALILTSTDGSQT----SFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~dg~~~----~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
.-+++..|.+..|.+.+.+.... .++|.+..|..+.-.. .+.+-+.+..... +.+..+|+++|.=|
T Consensus 19 w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~------~~~~~F~i~~~~~----~~~~~~~~~~~~~~ 88 (99)
T cd00900 19 WKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGS------DDPNCFAIVTKDR----GRRVFVFQADSEEE 88 (99)
T ss_pred ceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCC------CCCceEEEECCCC----CcEEEEEEcCCHHH
Confidence 34577888899999887754332 5788888843332211 3456666653332 68899999999999
Q ss_pred HHHHHHHHHhh
Q 003631 173 KEAWCKALRLA 183 (806)
Q Consensus 173 KEsWckalr~a 183 (806)
...|..||+-|
T Consensus 89 ~~~W~~al~~~ 99 (99)
T cd00900 89 AQEWVEALQQA 99 (99)
T ss_pred HHHHHHHHhcC
Confidence 99999999854
No 19
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=90.56 E-value=1.7 Score=40.36 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred cceeeeeecCcEEEEe-CCCC----CceEEecCCceEEEEecCCcccc-ccccccCeeeecCCcccccCceeEEEEeecc
Q 003631 97 PVRKYAKIKHRALILT-STDG----SQTSFPLKGCEIKAVSASSLSSR-KWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~-~~dg----~~~~i~L~~C~v~avs~s~~~sr-KwakrfPIk~e~~~~~iy~~~k~~~~y~et~ 170 (806)
--+|+-.|+++.|.-- +.+. .--.|+|.+|.++.........+ +=.+.|.++|.++ .+++||.++|.
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-------~r~~yl~A~s~ 93 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-------EGTLYVFAPTE 93 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC-------CCeEEEEcCCH
Confidence 3457788999888654 3332 22489999997665533321110 0124678888754 35799999999
Q ss_pred hhHHHHHHHHHh
Q 003631 171 WEKEAWCKALRL 182 (806)
Q Consensus 171 ~eKEsWckalr~ 182 (806)
=|.+.|-+|||.
T Consensus 94 ~er~~WI~ai~~ 105 (106)
T cd01238 94 ELRKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHHHh
Confidence 999999999985
No 20
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=90.02 E-value=1.4 Score=41.12 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHH
Q 003631 117 SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKAL 180 (806)
Q Consensus 117 ~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckal 180 (806)
+...|.|.+|..+.-.+ ..| ++|-|.+.. ...++||.+||-.|.|.|+++|
T Consensus 48 p~~vI~L~~c~~v~~~~----d~k--~~~~f~i~t-------~dr~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 48 PKRVIPLESCFNINKRA----DAK--HRHLIALYT-------RDEYFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred ceEEEEccceEEEeecc----ccc--cCeEEEEEe-------CCceEEEEeCCHHHHHHHHHHH
Confidence 45699999999765322 221 346666653 4468999999999999999997
No 21
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.97 E-value=1.6 Score=40.54 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=55.9
Q ss_pred ecceeeeeecCcEEEEeCC--CCCceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhH
Q 003631 96 YPVRKYAKIKHRALILTST--DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 96 ~p~~~~a~ik~~~L~l~~~--dg~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
.--+|+-.|.++.|.--.. +...-+|+|.....+..-.. ......|++.|-+++ +++||.++|.=|.
T Consensus 20 n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~----~~~~~~~~fqivt~~-------r~~yi~a~s~~E~ 88 (98)
T cd01244 20 HFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSD----KSFVNVDIITIVCED-------DTMQLQFEAPVEA 88 (98)
T ss_pred CCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCC----cccCCCceEEEEeCC-------CeEEEECCCHHHH
Confidence 5556788999999976544 33446899987655443222 234456899998664 4899999999999
Q ss_pred HHHHHHHHhh
Q 003631 174 EAWCKALRLA 183 (806)
Q Consensus 174 EsWckalr~a 183 (806)
+.|-+|||-+
T Consensus 89 ~~Wi~al~k~ 98 (98)
T cd01244 89 TDWLNALEKQ 98 (98)
T ss_pred HHHHHHHhcC
Confidence 9999999853
No 22
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.55 E-value=0.9 Score=42.13 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=42.2
Q ss_pred ceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHHhhhc
Q 003631 118 QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASC 185 (806)
Q Consensus 118 ~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr~as~ 185 (806)
+..|+|.||.|.-+-.. +...+-. .||...|.+.||+.|--||..|-++|..|..
T Consensus 44 ~~~i~L~~~~V~~~~~~------~~~~~~F-------~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 44 LGHLPLRGMLTEESEHE------WGVPHCF-------TIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEEcCceEEeeccCC------cCCceeE-------EEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 46889999999886552 2222333 3556678999999999999999999998854
No 23
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=89.05 E-value=1.6 Score=39.59 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=48.5
Q ss_pred eeeeeecCcEEEEeCC--C---CCceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhH
Q 003631 99 RKYAKIKHRALILTST--D---GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~--d---g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
+|+=.|+++.|.---. | +..-.|+|.+|.|.+.. .++ .+|=|.+. +.+++||-+++-=|+
T Consensus 17 ~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~-----~~~--~~F~i~~~--------~~r~~~L~A~s~~e~ 81 (91)
T cd01247 17 DRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE-----FDE--NRFDISVN--------ENVVWYLRAENSQSR 81 (91)
T ss_pred eEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCC-----CCC--CEEEEEeC--------CCeEEEEEeCCHHHH
Confidence 4677888998855433 2 22358999999877542 232 23444432 458999999999999
Q ss_pred HHHHHHHHh
Q 003631 174 EAWCKALRL 182 (806)
Q Consensus 174 EsWckalr~ 182 (806)
+.|.+||..
T Consensus 82 ~~Wi~al~~ 90 (91)
T cd01247 82 LLWMDSVVR 90 (91)
T ss_pred HHHHHHHhh
Confidence 999999963
No 24
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=87.40 E-value=3.9 Score=36.43 Aligned_cols=78 Identities=8% Similarity=0.142 Sum_probs=48.1
Q ss_pred eeeeeec--CcEEEEeCCCC-C--ceEEecCCceEEEEecCCccccc-cccccCeeeecCCcccccCceeEEEEeecchh
Q 003631 99 RKYAKIK--HRALILTSTDG-S--QTSFPLKGCEIKAVSASSLSSRK-WAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 99 ~~~a~ik--~~~L~l~~~dg-~--~~~i~L~~C~v~avs~s~~~srK-wakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
+|+-.|. +..|..-.... . .-.|+|.+|..+.+........+ =.+.+-+.+. -..+++||++||.=|
T Consensus 17 kRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~-------t~~r~~~~~a~s~~e 89 (101)
T cd01235 17 PRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK-------TSKRTYNFLAENINE 89 (101)
T ss_pred ceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE-------eCCceEEEECCCHHH
Confidence 4677777 44666654321 1 14899999887665332211000 0112224432 356789999999999
Q ss_pred HHHHHHHHHhh
Q 003631 173 KEAWCKALRLA 183 (806)
Q Consensus 173 KEsWckalr~a 183 (806)
.+.|-.|||.+
T Consensus 90 ~~~Wi~ai~~~ 100 (101)
T cd01235 90 AQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHhh
Confidence 99999999975
No 25
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=86.96 E-value=1.1 Score=42.05 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=42.6
Q ss_pred ceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHHhhhcc
Q 003631 118 QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCE 186 (806)
Q Consensus 118 ~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr~as~~ 186 (806)
+..|+|.||.|..+.-.. .-+.-. .|+...|.|.+|++|.=||..|.++|--|...
T Consensus 45 ~~~i~L~~~~v~~~~d~~------~~~n~f-------~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 45 QHILPLEGVQVESIEDDG------IERNGW-------IIKTPTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred eeEEEccceEEEecCCcc------cccceE-------EEecCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 357899999999775422 222333 45566789999999999999999999888754
No 26
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=86.59 E-value=3.8 Score=37.88 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=49.6
Q ss_pred eeeeeecCcEEEEeCCC-CCc--eEEecCCce-EEEEecCCccc-cccccccCeeeecCCcccccCceeEEEEeecchhH
Q 003631 99 RKYAKIKHRALILTSTD-GSQ--TSFPLKGCE-IKAVSASSLSS-RKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~d-g~~--~~i~L~~C~-v~avs~s~~~s-rKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
+|+-.|+++.|+--..- ..+ -.|+|..|. ...|.....++ .+ ...|-+.|..+ .+++||.++|-=|.
T Consensus 18 kRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~-~~~~~F~i~t~-------~Rty~l~a~s~~e~ 89 (103)
T cd01251 18 KRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQG-NHWYGVTLVTP-------ERKFLFACETEQDR 89 (103)
T ss_pred eEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccc-cccceEEEEeC-------CeEEEEECCCHHHH
Confidence 46788888888776442 211 268887553 22332221111 11 11246776643 67899999999999
Q ss_pred HHHHHHHHhhh
Q 003631 174 EAWCKALRLAS 184 (806)
Q Consensus 174 EsWckalr~as 184 (806)
+.|-+||+.|-
T Consensus 90 ~~Wi~ai~~v~ 100 (103)
T cd01251 90 REWIAAFQNVL 100 (103)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 27
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.32 E-value=0.9 Score=44.16 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003631 6 VGLIIGAIGVVAVEAAAVLYFIYKLNQKT 34 (806)
Q Consensus 6 ~~f~~g~l~l~~~e~~~~~~~~~~l~~~~ 34 (806)
.|+++|++|-++.=+++++|+|||++.|.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34444444444444568999999999663
No 28
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=85.69 E-value=2.4 Score=41.05 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=55.8
Q ss_pred eeeeeecCcEEEEeC-C-C----CCceEEecCCceEEEEecCCccccccccccCeeeecCC-------------cccccC
Q 003631 99 RKYAKIKHRALILTS-T-D----GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKS-------------SVLYNG 159 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~-~-d----g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~-------------~~iy~~ 159 (806)
||+..|+|..|.... + | .+.-.|+|.+|.+..|-..+-+...=...|=|-+..++ ..|+
T Consensus 21 RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~-- 98 (122)
T cd01263 21 RRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIE-- 98 (122)
T ss_pred EEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCcee--
Confidence 488999999997763 2 2 23358999999998886555444444444666655554 2222
Q ss_pred cee-EEEEeecchhHHHHHHHHHhh
Q 003631 160 SKL-IYIFLETSWEKEAWCKALRLA 183 (806)
Q Consensus 160 ~k~-~~~y~et~~eKEsWckalr~a 183 (806)
++ +||=+||.=|-+.|++||.-|
T Consensus 99 -r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 99 -RLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred -EEEEEEecCCHHHHHHHHHHHhcC
Confidence 22 344489999999999999754
No 29
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=82.71 E-value=6.4 Score=37.12 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=59.3
Q ss_pred ccceEEEeCCCCCC-cc-ccchHHHhhccceeeecceeeeeec-CcEEEEe-CC--C-CCceEEecCCceEEEEecCCcc
Q 003631 65 KQGYVWVLEPEKVP-KE-KFSKEQKKKKEFLEVYPVRKYAKIK-HRALILT-ST--D-GSQTSFPLKGCEIKAVSASSLS 137 (806)
Q Consensus 65 ~~g~~wv~~~~~~~-k~-k~~ke~k~~k~~~ev~p~~~~a~ik-~~~L~l~-~~--d-g~~~~i~L~~C~v~avs~s~~~ 137 (806)
++|.|-+.++++-- +. +.-|-=| ||.=.|+ ++.|.-. |. | -..-+|.|..|..+. .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~Wk-----------rRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~-~~~--- 65 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQ-----------RRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVV-DAE--- 65 (104)
T ss_pred CcceeEEcCCCCcccccceeecccc-----------ceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEe-ecc---
Confidence 46778888876431 11 1112211 3567776 4566552 22 1 234689999998754 333
Q ss_pred ccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHH
Q 003631 138 SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALR 181 (806)
Q Consensus 138 srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr 181 (806)
....+.|.|.+..++ .++||.+||-=|++.|-++|-
T Consensus 66 -~~~~~~~~f~I~tp~-------R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 66 -ARTGQKFSICILTPD-------KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -cccCCccEEEEECCC-------ceEEEEeCCHHHHHHHHHHHH
Confidence 223457778877444 679999999999999999984
No 30
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=81.47 E-value=6.4 Score=36.82 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=37.0
Q ss_pred EEecCCceEEEEecCCccccccccccCeeeecCCcccccCc--eeEEEEeecchhHHHHHHHHHhh
Q 003631 120 SFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGS--KLIYIFLETSWEKEAWCKALRLA 183 (806)
Q Consensus 120 ~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~--k~~~~y~et~~eKEsWckalr~a 183 (806)
-|+|.+|.|..|=.+ ++.+ |-+.| |+..+ .+||+.++| =|++.|-++||.+
T Consensus 46 li~l~~~~V~~v~ds-----~~~r--~~cFe-----l~~~~~~~~y~~~a~~-~er~~Wi~~l~~~ 98 (98)
T cd01245 46 LIDLSDAYLYPVHDS-----LFGR--PNCFQ-----IVERALPTVYYSCRSS-EERDKWIESLQAQ 98 (98)
T ss_pred eeeccccEEEEcccc-----ccCC--CeEEE-----EecCCCCeEEEEeCCH-HHHHHHHHHHhcC
Confidence 579999988877443 2333 45555 34444 488999999 9999999999863
No 31
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=76.05 E-value=11 Score=34.87 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=48.0
Q ss_pred eeeeeecCcEE--------EEeCCC--CCceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEee
Q 003631 99 RKYAKIKHRAL--------ILTSTD--GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (806)
Q Consensus 99 ~~~a~ik~~~L--------~l~~~d--g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~e 168 (806)
||+-.|+++.| +-.+.+ -+...|+|..|.++-.+-.. ..+.=.+.|-+.+.. ..+++||.+|
T Consensus 21 rRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~-~~~~~~~~~~f~i~t-------~~r~y~l~A~ 92 (108)
T cd01266 21 RRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLC-TAGNCIFGYGFDIET-------IVRDLYLVAK 92 (108)
T ss_pred EEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccc-cccCcccceEEEEEe-------CCccEEEEEC
Confidence 57888888764 333321 12258999999886443111 111111234455552 4578999999
Q ss_pred cchhHHHHHHHHHh
Q 003631 169 TSWEKEAWCKALRL 182 (806)
Q Consensus 169 t~~eKEsWckalr~ 182 (806)
|-=|.+.|-+|+|-
T Consensus 93 s~ee~~~Wi~~I~~ 106 (108)
T cd01266 93 NEEEMTLWVNCICK 106 (108)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999973
No 32
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=75.83 E-value=5.7 Score=37.35 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.0
Q ss_pred CcccccCceeEEEEeecchhHHHHHHHHHhh
Q 003631 153 SSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (806)
Q Consensus 153 ~~~iy~~~k~~~~y~et~~eKEsWckalr~a 183 (806)
...|+-+.|+++||.||-=|.+.|.+||++|
T Consensus 82 ~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 82 VFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 3345779999999999999999999999987
No 33
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.35 E-value=16 Score=33.26 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=45.2
Q ss_pred eeeeeecCc--EEEEe-CCC--CCceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhH
Q 003631 99 RKYAKIKHR--ALILT-STD--GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 99 ~~~a~ik~~--~L~l~-~~d--g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
+|.-+|+++ .|+-- +++ ...-.|+|.+|.+..... .++. .| .| ..+.++++|.++|-=|.
T Consensus 19 kRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----~~~~--~F--~i-------~t~~r~y~l~A~s~~e~ 83 (95)
T cd01265 19 SRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----EEKG--RF--EI-------HSNNEVIALKASSDKQM 83 (95)
T ss_pred eEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----CCCC--EE--EE-------EcCCcEEEEECCCHHHH
Confidence 456677743 45444 332 233599999987754221 1121 23 33 23568899999999999
Q ss_pred HHHHHHHHhh
Q 003631 174 EAWCKALRLA 183 (806)
Q Consensus 174 EsWckalr~a 183 (806)
+.|.+||..|
T Consensus 84 ~~Wi~al~~~ 93 (95)
T cd01265 84 NYWLQALQSK 93 (95)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 34
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.24 E-value=12 Score=34.45 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=41.9
Q ss_pred eeeeeec-CcEEE-EeC-CC-CCceEEecCC-----ceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeec
Q 003631 99 RKYAKIK-HRALI-LTS-TD-GSQTSFPLKG-----CEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLET 169 (806)
Q Consensus 99 ~~~a~ik-~~~L~-l~~-~d-g~~~~i~L~~-----C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et 169 (806)
+|+-.|+ |+.|+ -.+ ++ ...-.|+|.+ |+|..+. ..+.| .|-|.....+..+.+ +||+||
T Consensus 19 ~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~----~~~~~--~F~i~~~~~~~~~~r-----~f~a~s 87 (102)
T cd01241 19 PRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTE----RPRPN--TFIIRCLQWTTVIER-----TFHVES 87 (102)
T ss_pred eEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeecc----CCCcc--eEEEEeccCCcccCE-----EEEeCC
Confidence 4678888 66654 443 22 2222455544 4444442 22333 355543221222222 457999
Q ss_pred chhHHHHHHHHHhhh
Q 003631 170 SWEKEAWCKALRLAS 184 (806)
Q Consensus 170 ~~eKEsWckalr~as 184 (806)
.=|.+.|-+|||-++
T Consensus 88 ~ee~~eWi~ai~~v~ 102 (102)
T cd01241 88 PEEREEWIHAIQTVA 102 (102)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999763
No 35
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.83 E-value=17 Score=35.76 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=57.2
Q ss_pred cceeeeeecCcEEEEeCCCC--C-----c--eEEec--CCceEEEEecCCccccccccccC--eeeecCCcccccCceeE
Q 003631 97 PVRKYAKIKHRALILTSTDG--S-----Q--TSFPL--KGCEIKAVSASSLSSRKWAKRFP--IKVENKSSVLYNGSKLI 163 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~dg--~-----~--~~i~L--~~C~v~avs~s~~~srKwakrfP--Ik~e~~~~~iy~~~k~~ 163 (806)
=.|+|+.+.|.+|+|-|.+. . + -.|.| ..+.|-+|.++.+-+-. .|--| ++|+..--.-+--.-..
T Consensus 20 W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~-~kDiP~If~I~~~~~~~~~~~~~~ 98 (122)
T cd01243 20 WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHAS-KKDIPCIFRVTTSQISASSSKCST 98 (122)
T ss_pred ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccC-cccCCeEEEEEEecccCCCCccEE
Confidence 35789999999999998522 1 1 34577 68999999999876543 22223 45553222222233567
Q ss_pred EEEeecchhHHHHHHHHH
Q 003631 164 YIFLETSWEKEAWCKALR 181 (806)
Q Consensus 164 ~~y~et~~eKEsWckalr 181 (806)
||-+++==||.-|-.||-
T Consensus 99 ~~lA~s~~eK~kWV~aL~ 116 (122)
T cd01243 99 LMLADTEEEKSKWVGALS 116 (122)
T ss_pred EEEeCCchHHHHHHHHHH
Confidence 888999999999999883
No 36
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.19 E-value=23 Score=34.07 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=52.7
Q ss_pred eeeeeecCcEEEEeCCCC----------CceEEecCCceE-EEEecCCccccccccccCeeeecCCcccccCceeEEEEe
Q 003631 99 RKYAKIKHRALILTSTDG----------SQTSFPLKGCEI-KAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFL 167 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg----------~~~~i~L~~C~v-~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~ 167 (806)
..|+.|+|..|++--... .+..|.|.+|.+ .+...+ -|++=++|..+ ..+.++|.+
T Consensus 28 ~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~-------Kr~~VF~L~~~------~g~~~lfqA 94 (117)
T cd01230 28 MFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYS-------KKPHVFRLRTA------DWREFLFQT 94 (117)
T ss_pred EEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecccc-------CCCcEEEEEcC------CCCEEEEEC
Confidence 468999999999863321 136899999984 343333 24455566632 345788999
Q ss_pred ecchhHHHHHHHHHhhhc
Q 003631 168 ETSWEKEAWCKALRLASC 185 (806)
Q Consensus 168 et~~eKEsWckalr~as~ 185 (806)
.+-=|=+.|..+|++||-
T Consensus 95 ~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 95 SSLKELQSWIERINVVAA 112 (117)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 37
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=69.08 E-value=1.7 Score=38.03 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=0.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003631 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQK 33 (806)
Q Consensus 4 ~~~~f~~g~l~l~~~e~~~~~~~~~~l~~~ 33 (806)
.+.|.+.|+++-+++=++.+++++.|++.|
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ---------------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777666666677788888999866
No 38
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=49.71 E-value=20 Score=34.58 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 003631 2 ISFFVGLIIGAIGVVAVEAAAVLYFI-YKLN 31 (806)
Q Consensus 2 ~~~~~~f~~g~l~l~~~e~~~~~~~~-~~l~ 31 (806)
++++.|.|.|.++.+++|.+=++=.+ ||++
T Consensus 54 ~GL~~GiFvG~la~ALaEvlnv~PIlarRi~ 84 (110)
T PF13782_consen 54 FGLFAGIFVGCLAAALAEVLNVFPILARRIG 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999988776 7776
No 39
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.89 E-value=53 Score=31.71 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=42.5
Q ss_pred eEEecCCceEEEEecCCcc--ccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHHh
Q 003631 119 TSFPLKGCEIKAVSASSLS--SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRL 182 (806)
Q Consensus 119 ~~i~L~~C~v~avs~s~~~--srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr~ 182 (806)
..|.|..|.|+-+.-+... +.+|.--| ||.+. .+.+.+.||+.|.=||-.|-+||-.
T Consensus 47 gri~l~~~~I~d~~Dg~~~~~~~~~knaf--kl~~~-----~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 47 GRIDLDRCEVVNIRDGKMFSSGHTIKNSL--KIYSE-----STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEcccEEEEECCCCccccCCceeEEEE--EEEEc-----CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 4799999999999766544 44554433 44433 2458899999999999999999853
No 40
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=45.11 E-value=33 Score=29.43 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=23.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003631 1 MISFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (806)
Q Consensus 1 ~~~~~~~f~~g~l~l~~~e~~~~~~~~~~l~ 31 (806)
|=.|.-||+.|.++.+++=+.+++-+=++.-
T Consensus 1 mkkF~~G~l~G~~~t~aa~a~av~~~kK~vi 31 (54)
T PF11240_consen 1 MKKFGKGFLTGVAATLAAIAGAVFTFKKTVI 31 (54)
T ss_pred CcchhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 5579999999999998886666655544443
No 41
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.70 E-value=41 Score=36.42 Aligned_cols=29 Identities=34% Similarity=0.395 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003631 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT 34 (806)
Q Consensus 3 ~~~~~f~~g~l~l~~~e~~~~~~~~~~l~~~~ 34 (806)
.||.+|++|+++|+++= ..=++.++-.|+
T Consensus 185 vFL~~lligl~llllv~---~~q~L~~~sKk~ 213 (261)
T KOG1631|consen 185 VFLYILLIGLSLLLLVL---SQQFLSKLSKKT 213 (261)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHhhhcc
Confidence 48888999988777643 333445554344
No 42
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=43.63 E-value=22 Score=33.63 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=23.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003631 2 ISFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (806)
Q Consensus 2 ~~~~~~f~~g~l~l~~~e~~~~~~~~~~l~ 31 (806)
++|+.||+.|-..++++=++++++.+||+.
T Consensus 34 ~~~~~Gi~~~~~l~g~i~g~~~~~~~r~lK 63 (101)
T PRK13707 34 ICIGWGITTSKYLFGIIAAVLVWFGIRKLK 63 (101)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777888888999987
No 43
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.40 E-value=98 Score=30.27 Aligned_cols=99 Identities=19% Similarity=0.323 Sum_probs=63.5
Q ss_pred hhccceEEEeCCCCCCccccchHHHhhccceeeecceeeeeecCcEEEEeCCCCCc---eEEecCCce------EEEEe-
Q 003631 63 YKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQ---TSFPLKGCE------IKAVS- 132 (806)
Q Consensus 63 ~~~~g~~wv~~~~~~~k~k~~ke~k~~k~~~ev~p~~~~a~ik~~~L~l~~~dg~~---~~i~L~~C~------v~avs- 132 (806)
+.++|.++|.+.++-. |.-||+-|=|+.||+-=.-|.. .+..++.|- |.--.
T Consensus 4 ~~~DGelk~k~~~~~k------------------~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~ 65 (116)
T cd01223 4 PLLDGEVRIKASEDQK------------------TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPS 65 (116)
T ss_pred cccCCceEEeEeccCC------------------CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCc
Confidence 3466888887754311 3368999999999987554322 235555543 44322
Q ss_pred cCC-ccccccccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHHhhhcc
Q 003631 133 ASS-LSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCE 186 (806)
Q Consensus 133 ~s~-~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr~as~~ 186 (806)
... .++.+|.--|=| -|+ .|...+-||+.|-=||..|-+||=+|-++
T Consensus 66 ~d~~~~~~~~~~~f~L--~~~-----~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 66 RDTEGRDTRWKYGFYL--AHK-----QGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred cCcccCCcceEEEEEE--Eec-----CCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 222 125578655433 333 35667899999999999999999998765
No 44
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=42.45 E-value=29 Score=33.97 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccc
Q 003631 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT-KKVA 38 (806)
Q Consensus 4 ~~~~f~~g~l~l~~~e~~~~~~~~~~l~~~~-~~~~ 38 (806)
|.++.++|-|..+.+-++|+++||+|-.|+- ++|+
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~arrR~ 119 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRAARRRQ 119 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666666666677899999999888765 4333
No 45
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=41.96 E-value=24 Score=34.71 Aligned_cols=38 Identities=8% Similarity=0.287 Sum_probs=27.3
Q ss_pred ccccCeeeecCCcccccCceeEEEEeecchhHHHHHHHHHhh
Q 003631 142 AKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (806)
Q Consensus 142 akrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalr~a 183 (806)
...|||++.|-.+.-| .+=||++|--+.-.||+.+..+
T Consensus 97 ~~~yp~~~~hlG~~~~----~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGY----SYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-E----EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCce----EEEEEeCCHHHHHHHHHHHHhc
Confidence 6789999997666533 3789999999999999998654
No 46
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=40.74 E-value=15 Score=39.14 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=18.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003631 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (806)
Q Consensus 3 ~~~~~f~~g~l~l~~~e~~~~~~~~~~l~ 31 (806)
.+++|++.|++++++|=++++++ |+-|
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v--R~CR 64 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV--RYCR 64 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH--HHHh
Confidence 36678888888888876655554 5455
No 47
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.97 E-value=35 Score=28.80 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=7.2
Q ss_pred chhhHHHHHHHHHH
Q 003631 3 SFFVGLIIGAIGVV 16 (806)
Q Consensus 3 ~~~~~f~~g~l~l~ 16 (806)
+|+.||++|.++..
T Consensus 27 ~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 27 AFLLGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555554433
No 48
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=37.65 E-value=35 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhccCcccchhhHHHHHHHHHH
Q 003631 174 EAWCKALRLASCEDKKRLEWFTKLNEDFHIY 204 (806)
Q Consensus 174 EsWckalr~as~~~~~~~~w~~~l~~~f~~Y 204 (806)
|+||+.++ +|.+-+|+.+=..+|..|
T Consensus 4 e~WC~~m~-----~kpK~dWtanea~~fAKh 29 (32)
T PF11216_consen 4 EAWCEDMK-----EKPKGDWTANEAADFAKH 29 (32)
T ss_pred HHHHHHHh-----hCCcccCcHhHHHHHHHh
Confidence 79999997 556777999988888765
No 49
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=35.06 E-value=38 Score=32.10 Aligned_cols=23 Identities=17% Similarity=0.547 Sum_probs=21.3
Q ss_pred CceeEEEEeecchhHHHHHHHHH
Q 003631 159 GSKLIYIFLETSWEKEAWCKALR 181 (806)
Q Consensus 159 ~~k~~~~y~et~~eKEsWckalr 181 (806)
..|.+.+|+.|.+||+.|-++++
T Consensus 69 ~~KSf~~~asS~~Er~eW~~hI~ 91 (96)
T cd01228 69 NGKSYTFLLSSDYERSEWRESIQ 91 (96)
T ss_pred CCceEEEEecCHHHHHHHHHHHH
Confidence 57999999999999999999885
No 50
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.17 E-value=2e+02 Score=27.72 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=49.4
Q ss_pred eeeeeecCcEEEEeCCCCCc--------------eEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEE
Q 003631 99 RKYAKIKHRALILTSTDGSQ--------------TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg~~--------------~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~ 164 (806)
.||.-|=|+.||+--+++.. +.|.|.++.|.-+.-+. .. ++-.+|.+. ..+.+.
T Consensus 22 ~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~----~~--knaF~I~~~------~~~s~~ 89 (112)
T cd01261 22 ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS----EY--KNAFEIILK------DGNSVI 89 (112)
T ss_pred eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc----cc--CceEEEEcC------CCCEEE
Confidence 46677777777775445431 34899999998655443 11 223444432 245799
Q ss_pred EEeecchhHHHHHHHHHhhh
Q 003631 165 IFLETSWEKEAWCKALRLAS 184 (806)
Q Consensus 165 ~y~et~~eKEsWckalr~as 184 (806)
||+.|.=||..|-++|=.|-
T Consensus 90 l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 90 FSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred EEECCHHHHHHHHHHHHHHh
Confidence 99999999999999986653
No 51
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=30.34 E-value=6.5e+02 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCcE
Q 003631 367 GVKSSIQARIQRALSNMRTPSYIGEI 392 (806)
Q Consensus 367 ~~~d~Ik~KIQkKLnkiklPsFI~eI 392 (806)
+.++.....||++|.++++|.+=++.
T Consensus 9 y~~~~~~~~l~~~l~~i~iPdi~~~~ 34 (225)
T smart00328 9 YAAQEGALALQKELPKITIPDIRGDF 34 (225)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCce
Confidence 46677788899999999999877654
No 52
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=29.90 E-value=57 Score=30.08 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003631 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLNQ 32 (806)
Q Consensus 3 ~~~~~f~~g~l~l~~~e~~~~~~~~~~l~~ 32 (806)
+|+.|++.|-+.++++=+++++|.++|+..
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~ 58 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFKK 58 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHc
Confidence 467788888777888878889999999883
No 53
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=29.64 E-value=2.7e+02 Score=26.97 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCcE
Q 003631 367 GVKSSIQARIQRALSNMRTPSYIGEI 392 (806)
Q Consensus 367 ~~~d~Ik~KIQkKLnkiklPsFI~eI 392 (806)
+..+...+.||+.|.++++|.+.++.
T Consensus 4 y~~~~~~~~l~~~l~~~~ipdi~~~~ 29 (164)
T PF01273_consen 4 YANQVGIQILQKELQKIQIPDISGSF 29 (164)
T ss_dssp HHHHHHHHHHHHHHCC-----EEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccc
Confidence 45677788899999999999877654
No 54
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=29.16 E-value=59 Score=32.03 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003631 10 IGAIGVVAVEAAAVLYFIYKLN 31 (806)
Q Consensus 10 ~g~l~l~~~e~~~~~~~~~~l~ 31 (806)
.|.|+++++=++++.||+||+.
T Consensus 22 ~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 22 SGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4555667777888899999997
No 55
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=28.86 E-value=1.1e+02 Score=27.51 Aligned_cols=26 Identities=19% Similarity=-0.074 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003631 6 VGLIIGAIGVVAVEAAAVLYFIYKLN 31 (806)
Q Consensus 6 ~~f~~g~l~l~~~e~~~~~~~~~~l~ 31 (806)
++|..+++.++++=.++++|+|.++.
T Consensus 27 Gag~Aav~~~~~~~~l~~~~~iG~~L 52 (67)
T PF11511_consen 27 GAGYAAVFFLGLWFLLVALYFIGLLL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777888888888889999999998
No 56
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.72 E-value=1.9e+02 Score=27.66 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=46.1
Q ss_pred eeeeeecCcEEEE-eCCCCCc--eEEec-CCceEEEEecC------CccccccccccCeeeecCCcccccCceeEEEEee
Q 003631 99 RKYAKIKHRALIL-TSTDGSQ--TSFPL-KGCEIKAVSAS------SLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (806)
Q Consensus 99 ~~~a~ik~~~L~l-~~~dg~~--~~i~L-~~C~v~avs~s------~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~e 168 (806)
+|...|++..|.. .++++.. -.|.| .++.|..--.. ..+.+ =.++|-|+|+ +.++++.|-++
T Consensus 35 kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~-~~~~~~~~i~-------t~~R~~~l~a~ 106 (121)
T cd01254 35 KRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDI-TGLRHGLKIT-------NSNRSLKLKCK 106 (121)
T ss_pred ceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCccccccccccccc-CCCceEEEEE-------cCCcEEEEEeC
Confidence 4677788887754 4445522 12333 34444321111 11111 1346777776 45677899999
Q ss_pred cchhHHHHHHHHHhh
Q 003631 169 TSWEKEAWCKALRLA 183 (806)
Q Consensus 169 t~~eKEsWckalr~a 183 (806)
|..+.+.|.++++.|
T Consensus 107 s~~~~~~Wi~~i~~a 121 (121)
T cd01254 107 SSRKLKQWMASIEDA 121 (121)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 57
>PF15409 PH_8: Pleckstrin homology domain
Probab=27.44 E-value=2.6e+02 Score=26.05 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=43.3
Q ss_pred eeeeee--cCcEEEEe--CCCC-CceEEecCCceEEEEecCCccccccccccCeeeecCCcccccCceeEEEEeecchhH
Q 003631 99 RKYAKI--KHRALILT--STDG-SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 99 ~~~a~i--k~~~L~l~--~~dg-~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
+||=.| ++++|--. +.++ .+-+|+|..| |.+++.. +++ |-|. .|..+.+|=+.+-=+-
T Consensus 16 kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a-~is~~~~-------~~~--I~id-------sg~~i~hLKa~s~~~f 78 (89)
T PF15409_consen 16 KRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLA-VISANKK-------SRR--IDID-------SGDEIWHLKAKSQEDF 78 (89)
T ss_pred eEEEEEEcCCcEEEEEecCCCCeeEeEEEccce-EEEecCC-------CCE--EEEE-------cCCeEEEEEcCCHHHH
Confidence 566677 77777433 2343 2347777766 3333321 122 3333 3677888889999999
Q ss_pred HHHHHHHHhh
Q 003631 174 EAWCKALRLA 183 (806)
Q Consensus 174 EsWckalr~a 183 (806)
+.|..||+.|
T Consensus 79 ~~Wv~aL~~a 88 (89)
T PF15409_consen 79 QRWVSALQKA 88 (89)
T ss_pred HHHHHHHHhc
Confidence 9999999987
No 58
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.26 E-value=1e+02 Score=31.37 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhhcccccc
Q 003631 18 VEAAAVLYFIYKLNQKTKKVAS 39 (806)
Q Consensus 18 ~e~~~~~~~~~~l~~~~~~~~~ 39 (806)
+=.++.||++||..||.+++..
T Consensus 112 lg~~l~fl~~r~ysRkl~~~~~ 133 (150)
T COG3086 112 LGLALGFLLARRYSRKLAKRTE 133 (150)
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3345567788999988854443
No 59
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=25.23 E-value=55 Score=43.25 Aligned_cols=77 Identities=22% Similarity=0.368 Sum_probs=50.2
Q ss_pred CcEEEEeCC--CCCceEEe--------------cCCceEEEEecCCccccccccccCe-eeecCCcccccCceeEEEEee
Q 003631 106 HRALILTST--DGSQTSFP--------------LKGCEIKAVSASSLSSRKWAKRFPI-KVENKSSVLYNGSKLIYIFLE 168 (806)
Q Consensus 106 ~~~L~l~~~--dg~~~~i~--------------L~~C~v~avs~s~~~srKwakrfPI-k~e~~~~~iy~~~k~~~~y~e 168 (806)
||++||||+ ||.|..-- ..|+-.+++. || ||. + +|.++.|||.+
T Consensus 512 gkIiIMTDADvDGsHIr~LLlnff~~~~p~Li~~~Gfl~~~~t-------------Pl~kv~-k-----~gk~~~~fys~ 572 (1388)
T PTZ00108 512 GSLMIMTDQDHDGSHIKGLLINMIHHFWPSLLKNPGFLKEFIT-------------PIVKAT-K-----KGNQVISFFTI 572 (1388)
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHhhHHhcccCCEEEEecC-------------CEEEEE-E-----CCceeEEecCH
Confidence 567889987 99985322 2477666653 32 332 1 16678899988
Q ss_pred cchhHHHHHHHHHhhhccCcccchhhH--------HHHHHHHHHHHhhhcc
Q 003631 169 TSWEKEAWCKALRLASCEDKKRLEWFT--------KLNEDFHIYLTTLVAG 211 (806)
Q Consensus 169 t~~eKEsWckalr~as~~~~~~~~w~~--------~l~~~f~~Y~s~l~~~ 211 (806)
. |+|.|-+.+. .. .|.. .-.+++.+|+..+++.
T Consensus 573 ~--E~e~~~~~~~----~~----~~~IkyyKGLGe~~~~e~~eyf~~~~r~ 613 (1388)
T PTZ00108 573 P--DFEKWKQTVG----LK----GWKIKYYKGLGTSTDKEGKEYFSNIDKH 613 (1388)
T ss_pred H--HHHHHHHHcC----CC----CCccccccchhhcCHHHHHHHhcccCce
Confidence 6 8999987654 11 2533 3567889998777744
No 60
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=25.00 E-value=1.2e+02 Score=24.20 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=20.7
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003631 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIY 28 (806)
Q Consensus 1 ~~~-~~~~f~~g~l~l~~~e~~~~~~~~~ 28 (806)
||- +|.|.++|++-+.++-....-|+=.
T Consensus 1 MvE~lL~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 1 MIEVLLFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 443 8899999999888776666666553
No 61
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=24.99 E-value=78 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=10.8
Q ss_pred Ccchh-hHHHHHHHHHHH
Q 003631 1 MISFF-VGLIIGAIGVVA 17 (806)
Q Consensus 1 ~~~~~-~~f~~g~l~l~~ 17 (806)
||.|. +.++.|++++.+
T Consensus 1 M~~F~~P~~L~~Llllp~ 18 (77)
T PF07584_consen 1 MFSFLNPWYLWLLLLLPL 18 (77)
T ss_pred CcchHhHHHHHHHHHHHH
Confidence 77777 666666665444
No 62
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=24.99 E-value=1e+02 Score=24.98 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 003631 3 SFFVGLIIGAIGVVAVEAAAVLYF 26 (806)
Q Consensus 3 ~~~~~f~~g~l~l~~~e~~~~~~~ 26 (806)
.|+.+++.|.+.+++.=++++.|+
T Consensus 7 nfl~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 7 NFLLSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhheEEE
Confidence 378888888865555545544443
No 63
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=24.79 E-value=1.3e+02 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=20.6
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003631 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIY 28 (806)
Q Consensus 1 ~~~-~~~~f~~g~l~l~~~e~~~~~~~~~ 28 (806)
||- +|.|.++|++-+-++-....-|+=.
T Consensus 1 MvEplL~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 443 8899999999888776666666553
No 64
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=24.31 E-value=38 Score=33.76 Aligned_cols=20 Identities=10% Similarity=0.587 Sum_probs=13.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003631 2 ISFFVGLIIGAIGVVAVEAAAVLYFIYK 29 (806)
Q Consensus 2 ~~~~~~f~~g~l~l~~~e~~~~~~~~~~ 29 (806)
+|++.|||+|+++ ++||++.
T Consensus 94 ~G~liGff~g~~~--------~~~L~~~ 113 (140)
T PF13373_consen 94 WGLLIGFFFGLFS--------LFWLLRE 113 (140)
T ss_pred HHHHHHHHHHHHh--------HHHHhhc
Confidence 5678888888765 4566654
No 65
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=23.24 E-value=98 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 003631 2 ISFFVGLIIGAIGVVAVEAAAVLYF 26 (806)
Q Consensus 2 ~~~~~~f~~g~l~l~~~e~~~~~~~ 26 (806)
||+|-||++|+|.+++.=.+..++.
T Consensus 50 iGIlYG~viGlli~~i~~~~~~~~~ 74 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSPIFM 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999998776655554443
No 66
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=21.83 E-value=1.4e+02 Score=23.97 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003631 4 FFVGLIIGAIGVVAVEAAAVLYFIY 28 (806)
Q Consensus 4 ~~~~f~~g~l~l~~~e~~~~~~~~~ 28 (806)
.|.|.++|++.+.++-....-|+-.
T Consensus 5 lL~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 7899999999888877666666654
No 67
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.69 E-value=50 Score=32.15 Aligned_cols=12 Identities=58% Similarity=0.988 Sum_probs=6.2
Q ss_pred cchhhHHHHHHH
Q 003631 2 ISFFVGLIIGAI 13 (806)
Q Consensus 2 ~~~~~~f~~g~l 13 (806)
|+|++||++|++
T Consensus 4 i~lvvG~iiG~~ 15 (128)
T PF06295_consen 4 IGLVVGLIIGFL 15 (128)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 68
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=20.61 E-value=1.1e+02 Score=28.53 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=10.1
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 003631 3 SFFVGLIIGAIGVVAVEAA 21 (806)
Q Consensus 3 ~~~~~f~~g~l~l~~~e~~ 21 (806)
+|+.||++|...++++=++
T Consensus 29 ~~~~Gi~~~~~l~g~~lg~ 47 (95)
T TIGR02762 29 LFGIGILSGKALIGLILGA 47 (95)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 4566666665544444333
Done!