Query 003631
Match_columns 806
No_of_seqs 140 out of 317
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:09:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003631.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1680-1684//hhsearch_pdb/003631hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h8s_A DCC-interacting protein 1.0 1 1 40.6 10.7 97 62-186 300-399 (407)
2 4a6h_A Phosphatidylinositol 4, 1.0 1 1 40.6 9.8 87 98-185 23-118 (120)
3 4f7h_A Fermitin family homolog 1.0 1 1 40.6 9.0 79 99-187 68-152 (173)
4 2w2x_D 1-phosphatidylinositol- 1.0 1 1 40.4 8.1 82 97-187 28-121 (124)
5 2dkp_A Pleckstrin homology dom 1.0 1 1 38.7 11.3 98 63-187 21-121 (128)
6 1fgy_A GRP1; PH domain, signal 1.0 1 1 37.8 9.3 83 98-187 22-122 (127)
7 2lul_A Tyrosine-protein kinase 1.0 1 1 37.4 9.8 86 99-191 38-127 (164)
8 2ys3_A UNC-112-related protein 1.0 1 1 36.9 10.0 84 99-191 30-118 (137)
9 1x05_A Pleckstrin; PH domain, 1.0 1 1 36.8 8.6 84 98-188 35-123 (129)
10 1v89_A Hypothetical protein KI 1.0 1 1 36.7 9.4 86 98-187 25-114 (118)
No 1
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=40.61 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=62.6
Q ss_pred HHHCCCEEEEECC-CCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCEEEEECC--CCCCEEEECCCCEEEEEECCCCCC
Q ss_conf 6411314997479-9988654456787200220110110113623717898379--998107831771699971687454
Q 003631 62 AYKKQGYVWVLEP-EKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTST--DGSQTSFPLKGCEIKAVSASSLSS 138 (806)
Q Consensus 62 ~~~~~g~~wv~~~-~~~~k~k~~ke~k~~k~~~ev~p~~~~a~ik~~~L~l~~~--dg~~~~i~L~~C~v~avs~s~~~s 138 (806)
...|+|+||.-.. +...+ .=.|++-.|+++.|..-.. +.....|.|.+|.|..+....
T Consensus 300 ~~~k~G~L~k~~~~g~~~~----------------~W~rrwfvl~~~~l~y~~~~~~~~~~~~~l~~~~v~~~~~~~--- 360 (407)
T 4h8s_A 300 LIQKAGYLNLRNKTGLVTT----------------TWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSVMAVDCED--- 360 (407)
T ss_dssp CSCCEEEEEEEEECSSSCE----------------EEEEEEEEECSSCEECCCTTCSSCCCCBCSSCCEEEEECCTT---
T ss_pred CCEEECEEEEECCCCCCCC----------------CCEEEEEEEECCEEEEEECCCCCCCEEEECCCEEEEECCCCC---
T ss_conf 5236540030312799888----------------743789999899899995788788707877830898788888---
Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 101123582554178532248216999940414379999999964104
Q 003631 139 RKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCE 186 (806)
Q Consensus 139 rKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalR~as~~ 186 (806)
|||-..|.+++ +.+++||.++|--|.+.|.+||+.|...
T Consensus 361 ----r~~cF~i~~~~-----~~~~~~l~A~s~~e~~~Wi~ai~~a~~~ 399 (407)
T 4h8s_A 361 ----RRYCFQITTPN-----GKSGIILQAESRKENEEWICAINNISRQ 399 (407)
T ss_dssp ----CSSEEEEECTT-----SSCCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred ----CCCEEEEEECC-----CCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf ----98359999469-----9956999719999999999999999998
No 2
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=1.00 E-value=1 Score=40.59 Aligned_cols=87 Identities=11% Similarity=0.126 Sum_probs=60.1
Q ss_pred CEEEEEECCCEEEEEC-CC-----CCCEEEECCCCEEEEEECCCCCCCC---CCCCCCEEEECCCCCCCCCCEEEEEEEE
Q ss_conf 1011362371789837-99-----9810783177169997168745410---1123582554178532248216999940
Q 003631 98 VRKYAKIKHRALILTS-TD-----GSQTSFPLKGCEIKAVSASSLSSRK---WAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (806)
Q Consensus 98 ~~~~a~ik~~~L~l~~-~d-----g~~~~i~L~~C~v~avs~s~~~srK---wakrfPIk~e~~~~~iy~~~k~~~~y~e 168 (806)
-+++-+|++..|.--- .| -+.-.|+|.||.|.+++.... .++ =.+.+...+..+...+..+...++|.++
T Consensus 23 ~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~-~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~ 101 (120)
T 4a6h_A 23 SKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS-TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKAD 101 (120)
T ss_dssp EEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC----------CCEEEEEESSSSSSCTTCEEEEECS
T ss_pred CCEEEEEECCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCCC-CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECC
T ss_conf 007999959999898178767677734999889979987066643-2223345778379999478885347547999869
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 41437999999996410
Q 003631 169 TSWEKEAWCKALRLASC 185 (806)
Q Consensus 169 t~~eKEsWckalR~as~ 185 (806)
|--|.|.|-+|+|.+++
T Consensus 102 s~~e~~~Wv~aI~~~~~ 118 (120)
T 4a6h_A 102 SYESMMSWFDNLKILTS 118 (120)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHC
T ss_conf 99999999999999861
No 3
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=1.00 E-value=1 Score=40.56 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=64.2
Q ss_pred EEEEEECCCEEEEECC-----CCCCEEEECCCCEEEE-EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHH
Q ss_conf 0113623717898379-----9981078317716999-716874541011235825541785322482169999404143
Q 003631 99 RKYAKIKHRALILTST-----DGSQTSFPLKGCEIKA-VSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~-----dg~~~~i~L~~C~v~a-vs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
+++..+||..|..-.+ ..+...|.|.||+|.- |+-+. .||.||++-|... |..-+||=.++--.
T Consensus 68 ryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~-------~Kf~IkL~vP~~~---gm~e~~Lrcd~E~q 137 (173)
T 4f7h_A 68 QYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISG-------QKFNIKLLIPVAE---GMNEIWLRCDNEKQ 137 (173)
T ss_dssp EEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEETTT-------TEEEEEEEEEETT---EEEEEEEEESSHHH
T ss_pred EEEEEEECCEEEEECCHHHHCCCCCEEEECCCEEEECCCCCCC-------CCEEEEEECCCCC---CCCEEEEECCCHHH
T ss_conf 5899980888989748767058982388517438853434345-------6046999646888---75146664588999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 799999999641047
Q 003631 173 KEAWCKALRLASCED 187 (806)
Q Consensus 173 KEsWckalR~as~~~ 187 (806)
-.-|-.|+||||.+.
T Consensus 138 ya~WMAAcrLAskGk 152 (173)
T 4f7h_A 138 YAHWMAACRLASKGK 152 (173)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999865532687
No 4
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=1.00 E-value=1 Score=40.44 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCEEEEEECCCEEEEECCC------------CCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEE
Q ss_conf 1101136237178983799------------9810783177169997168745410112358255417853224821699
Q 003631 97 PVRKYAKIKHRALILTSTD------------GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (806)
Q Consensus 97 p~~~~a~ik~~~L~l~~~d------------g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~ 164 (806)
--+|+-+|++..|+.-... ...-.|+|.+|.|..+.. .+-.|+|..++.++.. ...++|
T Consensus 28 Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~-----~~~~k~~~F~I~~~~~----~~~~~~ 98 (124)
T 2w2x_D 28 WTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ-----GKNQKSFVFILEPKQQ----GDPPVE 98 (124)
T ss_dssp EEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT-----CBTTBSEEEEEEECC------CCCEE
T ss_pred CEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEECCC-----CCCCCCEEEEEECCCC----CCCEEE
T ss_conf 5676999979999998035455556555677653089778788997257-----7678987999978989----973699
Q ss_pred EEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 99404143799999999641047
Q 003631 165 IFLETSWEKEAWCKALRLASCED 187 (806)
Q Consensus 165 ~y~et~~eKEsWckalR~as~~~ 187 (806)
|.++|.=|.+.|.+|||.|+...
T Consensus 99 ~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 99 FATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp EEECCCHHHHHHHHHHHHHHC--
T ss_pred EEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99799999999999999999863
No 5
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=38.73 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=68.3
Q ss_pred HHCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCEEEEECCCC---CCEEEECCCCEEEEEECCCCCCC
Q ss_conf 411314997479998865445678720022011011011362371789837999---81078317716999716874541
Q 003631 63 YKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDG---SQTSFPLKGCEIKAVSASSLSSR 139 (806)
Q Consensus 63 ~~~~g~~wv~~~~~~~k~k~~ke~k~~k~~~ev~p~~~~a~ik~~~L~l~~~dg---~~~~i~L~~C~v~avs~s~~~sr 139 (806)
+.++|+|+.........| -+++..|++..|..-.... +.-.|+|.+|.|..+.....
T Consensus 21 ~~~~G~L~K~~~~~~~~W-----------------k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~--- 80 (128)
T 2dkp_A 21 VVRRGWLYKQDSTGMKLW-----------------KKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDH--- 80 (128)
T ss_dssp CCEEEEEEEECCSSSCCE-----------------EEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGC---
T ss_pred CEEEEEEEEECCCCCCCC-----------------EEEEEEEECCEEEEECCCCCCCCCEEEECCCEEEEECCCCCC---
T ss_conf 689889998689988983-----------------448999909999997799975663699768649997577555---
Q ss_pred CCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 011235825541785322482169999404143799999999641047
Q 003631 140 KWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCED 187 (806)
Q Consensus 140 KwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKEsWckalR~as~~~ 187 (806)
..++|-+.+.++ +.+++||+++|.-|.+.|..||+.|+...
T Consensus 81 -~~~~~~F~i~~~------~~r~~~l~a~s~~e~~~Wi~al~~a~~~~ 121 (128)
T 2dkp_A 81 -INRKYAFKAAHP------NMRTYYFCTDTGKEMELWMKAMLDAALVQ 121 (128)
T ss_dssp -CSSCSEEEEECS------SSCCEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred -CCCCEEEEEECC------CCCEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf -788759999869------99889998599999999999999987116
No 6
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=1.00 E-value=1 Score=37.76 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=60.2
Q ss_pred CEEEEEECCCEEEEECCCC---CCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCC---------------CCCCCC
Q ss_conf 1011362371789837999---8107831771699971687454101123582554178---------------532248
Q 003631 98 VRKYAKIKHRALILTSTDG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKS---------------SVLYNG 159 (806)
Q Consensus 98 ~~~~a~ik~~~L~l~~~dg---~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~---------------~~iy~~ 159 (806)
-+++..|++..|..-...+ +.-.|+|.+|.|..+... .++|-+.+..++ ..+...
T Consensus 22 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~-------~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~ 94 (127)
T 1fgy_A 22 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP-------RKPNCFELYNPSHKGQVIKACKTEADGRVVEGN 94 (127)
T ss_dssp EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCS-------SCSSEEEEECSSSTTCCCCCEEECTTSCEEECC
T ss_pred EEEEEEEECCEEEEECCCCCCCCCEEEECCCEEEEECCCC-------CCCCEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 7999999799999967898777545998885189875678-------898518885688664311222336776300478
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 2169999404143799999999641047
Q 003631 160 SKLIYIFLETSWEKEAWCKALRLASCED 187 (806)
Q Consensus 160 ~k~~~~y~et~~eKEsWckalR~as~~~ 187 (806)
.+++||+++|.-|.+.|..||+.|...+
T Consensus 95 ~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 95 HVVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 6089998899999999999999983558
No 7
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=37.45 Aligned_cols=86 Identities=10% Similarity=0.234 Sum_probs=64.4
Q ss_pred EEEEEECCCEEEEECCCC----CCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHHH
Q ss_conf 011362371789837999----8107831771699971687454101123582554178532248216999940414379
Q 003631 99 RKYAKIKHRALILTSTDG----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (806)
Q Consensus 99 ~~~a~ik~~~L~l~~~dg----~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eKE 174 (806)
+|+-.|++..|.--..++ ..-+|+|.+|.++.+.............|...+.++ .+++||++++.-|.+
T Consensus 38 kRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~-------~rt~~l~A~s~~e~~ 110 (164)
T 2lul_A 38 ERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHD-------ANTLYIFAPSPQSRD 110 (164)
T ss_dssp EEEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECS-------SCEEEEECSSHHHHH
T ss_pred EEEEEEECCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-------CCEEEEECCCHHHHH
T ss_conf 4999997999999736676544440798753688886156556765566325999519-------927999899999999
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 99999996410476431
Q 003631 175 AWCKALRLASCEDKKRL 191 (806)
Q Consensus 175 sWckalR~as~~~~~~~ 191 (806)
.|-+|||.+...+...+
T Consensus 111 ~Wi~aL~~~i~~n~~~~ 127 (164)
T 2lul_A 111 LWVKKLKEEIKNNNNIM 127 (164)
T ss_dssp HHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHHHHCHHHH
T ss_conf 99999999998793646
No 8
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=36.90 Aligned_cols=84 Identities=24% Similarity=0.302 Sum_probs=63.9
Q ss_pred EEEEEECCCEEEEE-CC-C---CCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHHH
Q ss_conf 01136237178983-79-9---9810783177169997168745410112358255417853224821699994041437
Q 003631 99 RKYAKIKHRALILT-ST-D---GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 99 ~~~a~ik~~~L~l~-~~-d---g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~eK 173 (806)
+++.+++|..|+.- .. | .+.-.|.|+||+|.-- ++- =.++|-||++-|... |...+||-.++-=+-
T Consensus 30 rrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd-----~~~-~~~kf~ikl~iPs~~---g~r~y~l~cdsEeqy 100 (137)
T 2ys3_A 30 QHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPD-----VNV-SGQKFCIKLLVPSPE---GMSEIYLRCQDEQQY 100 (137)
T ss_dssp CCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEEC-----CBG-GGTBEEEEEEEECSS---SEEEEEEEESSHHHH
T ss_pred EEEEEEECCEEEEECCCHHCCCCCCEEEECCCCEEECC-----CCC-CCCCEEEEEECCCCC---CCEEEEEECCCHHHH
T ss_conf 47999828899998770121479734897798888636-----456-677638999726778---854799988999999
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 999999996410476431
Q 003631 174 EAWCKALRLASCEDKKRL 191 (806)
Q Consensus 174 EsWckalR~as~~~~~~~ 191 (806)
+.|-.|||+||.+.--.+
T Consensus 101 ~~WMaA~rlAskgktma~ 118 (137)
T 2ys3_A 101 ARWMAGCRLASKGRTMAD 118 (137)
T ss_dssp HHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHCCCCCHHH
T ss_conf 999999998546750443
No 9
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=1.00 E-value=1 Score=36.77 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=59.7
Q ss_pred CEEEEEECCC--EEEEECCC---CCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCHH
Q ss_conf 1011362371--78983799---981078317716999716874541011235825541785322482169999404143
Q 003631 98 VRKYAKIKHR--ALILTSTD---GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (806)
Q Consensus 98 ~~~~a~ik~~--~L~l~~~d---g~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~iy~~~k~~~~y~et~~e 172 (806)
-+|+-.|++. .|..-... -+.-.|+|.+|.|..|.... ..+|..+.|-+.|..+. .+++||++++.-|
T Consensus 35 k~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~-~~~~~~~~~~F~i~~~~------~~~~~l~a~s~~e 107 (129)
T 1x05_A 35 KVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNS-NGRKSEEENLFEIITAD------EVHYFLQAATPKE 107 (129)
T ss_dssp EEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCC-CSSSCSSCSEEEEECTT------CCCCEEECSSHHH
T ss_pred EEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCEEEECCCCC-CCCCCCCCEEEEEECCC------CCEEEEECCCHHH
T ss_conf 1599999689878999789998761058983698998725783-33456897089999489------9889998799999
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 7999999996410476
Q 003631 173 KEAWCKALRLASCEDK 188 (806)
Q Consensus 173 KEsWckalR~as~~~~ 188 (806)
.+.|..||+.|....+
T Consensus 108 ~~~Wi~al~~~~~~~~ 123 (129)
T 1x05_A 108 RTEWIKAIQMASRTGK 123 (129)
T ss_dssp HHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997058
No 10
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=1.00 E-value=1 Score=36.72 Aligned_cols=86 Identities=21% Similarity=0.309 Sum_probs=62.8
Q ss_pred CEEEEEECCCEEEEECCCC---CCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCC-CCCCCEEEEEEEECCHHH
Q ss_conf 1011362371789837999---810783177169997168745410112358255417853-224821699994041437
Q 003631 98 VRKYAKIKHRALILTSTDG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSV-LYNGSKLIYIFLETSWEK 173 (806)
Q Consensus 98 ~~~~a~ik~~~L~l~~~dg---~~~~i~L~~C~v~avs~s~~~srKwakrfPIk~e~~~~~-iy~~~k~~~~y~et~~eK 173 (806)
-+|+..|++..|..-.... +.-.|+|.+|.|..+.... +-.++|-++|..+... .....+++||+++|.-|.
T Consensus 25 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~----~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~ 100 (118)
T 1v89_A 25 QQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNP----EEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEM 100 (118)
T ss_dssp EEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCS----SCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHH
T ss_pred CEEEEEEECCEEEEEECCCCCCCEEEEECCCCEEEECCCCC----CCCCCCEEEEECCCCCCCCCCCCEEEEECCCHHHH
T ss_conf 37799998999999848998873079987887899767676----66775169997885444457885799987999999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999641047
Q 003631 174 EAWCKALRLASCED 187 (806)
Q Consensus 174 EsWckalR~as~~~ 187 (806)
+.|..||+.|....
T Consensus 101 ~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 101 EEWVKFLRRVAGSG 114 (118)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999997139
Done!