Query 003632
Match_columns 806
No_of_seqs 268 out of 1839
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:25:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003632.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1680-1684//hhsearch_pdb/003632hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x9n_A DNA ligase I; 5'-adenyl 1.0 1 1 1098.9 63.0 638 164-801 29-678 (688)
2 2hiv_A Thermostable DNA ligase 1.0 1 1 1012.3 60.2 597 183-805 13-620 (621)
3 3gde_A DNA ligase; DNA-binding 1.0 1 1 962.9 53.1 550 188-795 1-555 (558)
4 2cfm_A Thermostable DNA ligase 1.0 1 1 947.3 53.2 555 191-799 1-559 (561)
5 3l2p_A DNA ligase 3; DNA ligas 1.0 1 1 937.3 48.7 553 188-793 4-579 (579)
6 1vs0_A Putative DNA ligase-lik 1.0 1 1 531.0 27.6 305 426-781 3-309 (310)
7 1a0i_A DNA ligase; DNA replica 1.0 1 1 476.2 24.5 306 423-771 2-348 (348)
8 1fvi_A Chlorella virus DNA lig 1.0 1 1 416.0 25.3 264 430-776 1-297 (297)
9 1p16_A GTP--RNA, mRNA capping 1.0 1 1 316.2 17.6 266 448-790 55-362 (395)
10 4htp_A DNA ligase 4; helical d 1.0 1 1 291.1 15.0 206 188-420 11-235 (240)
No 1
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=1.00 E-value=1 Score=1098.94 Aligned_cols=638 Identities=49% Similarity=0.869 Sum_probs=590.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
Q ss_conf 65211012589999986432346999633699999999999201649999999999986324999865769998819768
Q 003632 164 KSNIVLLKKKAGEFDPKMVACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIA 243 (806)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~dl~~~vyL~~~~i~ 243 (806)
+..+.....+...|+|..++||..|++|+|+.||++|++|++|++|++|+++|++||+.+++.+|+|+.++|||++|+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~i~~t~~r~~k~~~l~~~~~~~~~~~~~dl~~~v~ll~g~l~ 108 (688)
T 1x9n_A 29 PLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLG 108 (688)
T ss_dssp --CGGGCCTTCSSCCHHHHCCSCTTSCCBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 66644336674347864322225899752999999999998610879999999999987534894889999999759977
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf 98665402777799999999993999899999986308977877420134676678998779999999999999829990
Q 003632 244 PAHEGLELGIGDASIIKALAEACGRTESHVKKQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDS 323 (806)
Q Consensus 244 P~~e~~elgIge~~LiKal~~~~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~e~L~kLA~~~G~~S 323 (806)
|+|++++||||+++|+|++++++|++.+.+++.|++.||+|+||+.+++.|++++.+++|||.+||+.|++||..+|++|
T Consensus 109 P~~~~~elgi~~~~L~k~i~~~~g~~~~~~~~~~~~~GDlg~va~~~~~~~~~~~~~~~lTv~~V~~~L~~ia~~~g~~s 188 (688)
T 1x9n_A 109 PPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAS 188 (688)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCHHHHTCC--------CCCSCCBHHHHHHHHHHHHHCCSTTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 45346332768479999999997929999999988538799999998741334579999969999999999986228625
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCC------------CCCCCCHHHH
Q ss_conf 8999999999998639772899999982001476438899999986440267799999------------9986418999
Q 003632 324 QEKKKNRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPP------------PNIQSPLEEA 391 (806)
Q Consensus 324 q~~K~~il~~LL~~~t~~E~k~LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~------------~~l~~~l~~a 391 (806)
+.+|..+|..||.+|++.|++||+|+|+++||||+++++|+.|||+||.+++.+...+ ..+++.++++
T Consensus 189 ~~~k~~~l~~ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (688)
T 1x9n_A 189 TAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAMVDAGKGKTAEARKTWLEEQ 268 (688)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHTTCCCCSCCHHHHHHHHHHHHHHSCTTCCSSCSCSCTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88999999999986999999999999843565573377899999987336862222103444432035556677789999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEE
Q ss_conf 99999895139944564765530386456886555899977643355579947898531797136764256076999992
Q 003632 392 AKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYL 471 (806)
Q Consensus 392 ~~~~~~~y~~~pd~~~i~~~l~~~g~~~l~~~~~i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~ 471 (806)
+..++++|+.||||+.+++.++++|+..++.+|.+++|+|++||||+++++++++++++++.+|++|+||||+|+|+|++
T Consensus 269 ~~~v~~~~~~~p~~~~l~~~l~~~g~~~l~~~~~~~~g~pv~PMLA~~~~~~~~~l~~~~~~~~~~E~K~DG~R~qih~~ 348 (688)
T 1x9n_A 269 GMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHAL 348 (688)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHTGGGCCCCTTSCCCCCEEEEESSHHHHHHHTTTSCEEEEEEESSEEEEEEEC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCEEEEEEEC
T ss_conf 99999997508999999999973660011223676789986671178568879998643787077887644173899992
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE
Q ss_conf 19939999158975778840289998740389999959979899880687854794789874311578456424439999
Q 003632 472 EDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYA 551 (806)
Q Consensus 472 ~~g~V~ifSR~g~~~T~~yPdi~~~l~~~~~~~v~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~v 551 (806)
.+|.+++|||+|+++|..||++.+++...+.+++.++|||||||+||..+|+++|||.|++|.|+++.....+.+++|++
T Consensus 349 ~~g~v~l~SR~g~d~t~~fPel~~~l~~~~~~~~~~~ILDGElV~~d~~~g~~~~F~~L~~r~r~~~~~~~~~~~v~~~v 428 (688)
T 1x9n_A 349 EGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYA 428 (688)
T ss_dssp TTSCEEEECTTSCBCTTTCHHHHHTSGGGBCTTCCCEEEEEEEEEECTTTCSBCCHHHHTTSCSSCCCGGGCCSEEEEEE
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHCCCCEEEEE
T ss_conf 89729999089975455045799999975225888758868999870799870898998777542541342356659999
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 66432189446587399999999973122898089986776099999999999998808942489708999985589999
Q 003632 552 FDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRS 631 (806)
Q Consensus 552 FDiLylnG~~L~~~Pl~eRr~~L~~li~~~~~~i~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs 631 (806)
|||||+||+++++.||.+||++|++++.+.++++.++++..+.+.+++.++|++++++|+||||+|+++.+|+|+||+|+
T Consensus 429 FDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlV~K~~~~ds~Y~~GkRs 508 (688)
T 1x9n_A 429 FDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRS 508 (688)
T ss_dssp EEEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEEECCEECCCCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTTCS
T ss_pred EECHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 94631069835569999999999996312798489986686398999999999998559952488605667997899807
Q ss_pred CCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99079715322335886338999998078988885037999996089983899100168989999999997401156899
Q 003632 632 LNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 711 (806)
Q Consensus 632 ~~WlKiK~dY~~~~~dtlDlVVIGa~~G~Gkr~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~ 711 (806)
.+|||+|++|++++++|+|+||||+++|+|+|+|++|+|+|||||+++++|++||+|||||||++++++++.++++++..
T Consensus 509 ~~WlK~K~~y~~~~~dt~D~vVIG~~~g~Gkr~g~~gslllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~ 588 (688)
T 1x9n_A 509 HNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPS 588 (688)
T ss_dssp EEEEEEEHHHHHSSCEEEEEEEEEEEEBCTTSBTSEEEEEEEEEETTTTEEEEEEEECCSCCHHHHHHHHHHHHHTEESS
T ss_pred CHHHEEEHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 14761024442144556637999988378877774005999999689986999865379999999999998750015588
Q ss_pred CCCCCCCCCCCCCCEEECCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 99874457888993794276289999510101854323456447999830121187578569991588999999999999
Q 003632 712 PRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTA 791 (806)
Q Consensus 712 p~~~~~~~~~~~pdvwi~P~~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t~~~i~ely~~ 791 (806)
|+.++.++....|++||+|..||||+|+++|.||.|++|+|.+.+++|++||||||+|+|+||+|+||+|+++|.+||+.
T Consensus 589 ~~~~~~~~~~~~p~vwv~P~~V~EV~~~e~t~S~~~~~~~g~~~~~~G~sLRfPrf~riR~DK~~~ea~t~~~l~~l~~~ 668 (688)
T 1x9n_A 589 PRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRK 668 (688)
T ss_dssp CCTTEECSSSCCCSEEECSCCEEEEEESEEEEESSCCTTTTTSCSSCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCHHHCCCHHHHHHHHHH
T ss_conf 88764457778885895786799999776031665223345433589965877579898699996888899999999998
Q ss_pred HHHCCCCCCC
Q ss_conf 4102999999
Q 003632 792 QKLNHPNNQD 801 (806)
Q Consensus 792 q~~~~~~~~~ 801 (806)
|+.+.+.++.
T Consensus 669 q~~~~~~~~~ 678 (688)
T 1x9n_A 669 QSQIQNQQGE 678 (688)
T ss_dssp HC--------
T ss_pred HHHHHCCCCC
T ss_conf 6764301468
No 2
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=1.00 E-value=1 Score=1012.27 Aligned_cols=597 Identities=31% Similarity=0.569 Sum_probs=544.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHH
Q ss_conf 2346999633699999999999201649999999999986324999865769998819768986654-027777999999
Q 003632 183 ACWEKGERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGL-ELGIGDASIIKA 261 (806)
Q Consensus 183 ~~w~~~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~dl~~~vyL~~~~i~P~~e~~-elgIge~~LiKa 261 (806)
..|+.+++|+|+.||++|++|++|++|++|+++|++||+.. +|+|+.+++||++|+|+|+|+++ +||||++.|+|+
T Consensus 13 ~~~~~~~~~~f~~~~~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~~gi~~~~L~k~ 89 (621)
T 2hiv_A 13 GLVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKS---DKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKA 89 (621)
T ss_dssp --------CBTHHHHHHHHHHHHCCCHHHHHHHHHHHHHTS---CGGGHHHHHHHTTTCSSCGGGCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88778997769999999999986448799999999999866---946789999998287576645650059799999999
Q ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHCCCCCC--CC--C----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999399989999998630897787742013467--66--7----89987799999999999998299908999999999
Q 003632 262 LAEACGRTESHVKKQYQEMGDLGLVAKASRSSQS--MM--R----KPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKA 333 (806)
Q Consensus 262 l~~~~G~s~~~ik~~y~~~GDlg~vA~~~r~~q~--~l--~----~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~~il~~ 333 (806)
+++++|++++.+++.|++.||+|++|+.+++.+. ++ + .+.+|||.+||+.|++||..+|++|+++|..+|..
T Consensus 90 ~~~~~g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~~f~~~~~~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ 169 (621)
T 2hiv_A 90 ISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAG 169 (621)
T ss_dssp HHHHHTCCHHHHHHHHHHHCCHHHHHHHHHHTC-------------CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99997919999999887549899999999741655442222346789999699999999999714376639999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99863977289999998200147643889999998644026779999999864189999999989513994456476553
Q 003632 334 LLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALL 413 (806)
Q Consensus 334 LL~~~t~~E~k~LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~~l~~~l~~a~~~~~~~y~~~pd~~~i~~~l~ 413 (806)
|+.+|++.|++||+|||+++||||+++++|+.||++||.... .....++++|+.+|||+.+++.++
T Consensus 170 ll~~~~~~E~k~l~Rli~~~lRiG~~~~~vl~ala~a~~~~~--------------~~~~~v~~~~~~~~dl~~v~~~l~ 235 (621)
T 2hiv_A 170 LLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQ--------------SASEIIERAYNLRADLGNIAKIIV 235 (621)
T ss_dssp HHHHSCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHSSSG--------------GGHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 998599999999999970777357457889999999841322--------------358999999723998999999987
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHH
Q ss_conf 03864568865558999776433555799478985317971367642560769999921993999915897577884028
Q 003632 414 TDGVWNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDV 493 (806)
Q Consensus 414 ~~g~~~l~~~~~i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi 493 (806)
+.|...+ ..+.+++|+|++||||+++++++++++++++ +|++|+||||+|+|+|+. +|.+++|||+|+++|..||++
T Consensus 236 ~~g~~~l-~~~~~~~~~pv~PmLA~~~~~~~~~l~~~~~-~~~~E~K~DG~R~qi~~~-g~~v~l~SR~g~~~t~~fP~l 312 (621)
T 2hiv_A 236 EKGIEAL-KTLKPQVGIPIRPMLAERLSNPEEILKKMGG-NAIVDYKYDGERAQIHKK-EDKIFIFSRRLENITSQYPDV 312 (621)
T ss_dssp HHCGGGG-TTCCCCTTSCCCCCEEEECSCHHHHHHHTTT-CEEEEEECSSEEEEEEEE-TTEEEEECTTCCBCGGGCHHH
T ss_pred HCCCCCC-CCCCCCCCCCCCCEECCCCCCHHHHHHHCCC-CEEEEEEECCEEEEEEEC-CCEEEEECCCCCCCHHHHHHH
T ss_conf 3374420-0177788999788327806766688862388-679999772265899985-998999868995817650469
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCC--CCCCCCEEEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 99987403899999599798998806878547947898743115784--5642443999966432189446587399999
Q 003632 494 VLAVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSL--SDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 571 (806)
Q Consensus 494 ~~~l~~~~~~~v~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~--~~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr 571 (806)
.+.+.+.++ +.++|||||||++|.++|+++|||.|++| ++.... .....+++|++|||||+||+++++.||.+||
T Consensus 313 ~~~~~~~l~--~~~~iLDGElv~~d~~~g~~l~F~~L~~r-~~~~~~~~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr 389 (621)
T 2hiv_A 313 VDYVSKYIE--GKEFIIEGEIVAIDPESGEMRPFQELMHR-KRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARR 389 (621)
T ss_dssp HHHHHHHBC--CSSEEEEEEEEEBCTTTCCBCCTHHHHHH-HHCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHH
T ss_pred HHHHHHHCC--CCCEEEEEEEEEEECCCCCCCCHHHHHHH-CCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 999997578--76858858999730688975898998621-245542343145765999993444089705459999999
Q ss_pred HHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 99997312289808998677609999999999999880894248970899998558999999079715322335886338
Q 003632 572 EHLYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDL 651 (806)
Q Consensus 572 ~~L~~li~~~~~~i~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~~~dtlDl 651 (806)
++|++++.+. +++.+++...+.+.+++.++|++++++|+||||+|+++.+|+|+||+|+.+|||+|++|+++|+|++|+
T Consensus 390 ~~L~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~~~ds~Y~~G~Rs~~WlK~K~~~~~~~~dt~D~ 468 (621)
T 2hiv_A 390 KLLESIVKPN-DYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDL 468 (621)
T ss_dssp HHHHHHBCCC-SSEEECCEEEESSHHHHHHHHHHHHHTTCCEEEEECCSTTCCCCTTCEEEEEEEEETTCTTSSCEEEEE
T ss_pred HHHHHHHCCC-CCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECHHCCCCCCEEEE
T ss_conf 9999970758-848986469818899999999999845992589985588898649891888189920010676760689
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 99999807898888503799999608998389910016898999999999740115689999874457888993794276
Q 003632 652 VPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPT 731 (806)
Q Consensus 652 VVIGa~~G~Gkr~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~~~~~~~~pdvwi~P~ 731 (806)
||||+++|+|+|+|++|+|+|||||+++++|++||+|||||||++++++++.+++++++.++ +..+....|++||+|.
T Consensus 469 vViG~~~g~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~~~~l~~~l~~~~~~~~p--~~~~~~~~~~vwv~P~ 546 (621)
T 2hiv_A 469 VVVGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLMEIKRDVKH--PRVNSKMEPDIWVEPV 546 (621)
T ss_dssp EEEEEEECSGGGTTSEEEEEEEEEETTTTEEEEEEEECBSCCHHHHHHHHHHHHTTEESSCC--TTEECSSCCSEEECSC
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCEEEECCC
T ss_conf 99999728987777534269999828998599973667888999999999987653567899--7756678860896576
Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 28999951010185432345644799983012118757856999158899999999999941029999999999
Q 003632 732 EVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNED 805 (806)
Q Consensus 732 ~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t~~~i~ely~~q~~~~~~~~~~~~~ 805 (806)
.||||+|+++|.||.|+||+|.+.+++|++||||||+|+|+||+|+||+|+++|.+||+.|+.+...+...+||
T Consensus 547 ~V~EV~~~~~t~s~~~~a~~~~~~~~~G~sLRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~~~~~~~~~~~~ 620 (621)
T 2hiv_A 547 YVAEIIGSEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPAVDES 620 (621)
T ss_dssp CEEEEEESEEEEETTCCTTTTTSSTTCEEEEESCEEEEECTTCCGGGSCBHHHHHHHHHHSCCC----------
T ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 69999988877576533443455578872688678989728999588889999999999745025667555577
No 3
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=962.95 Aligned_cols=550 Identities=30% Similarity=0.491 Sum_probs=501.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 996336999999999992016499999999999863249998-6576999881976898665402777799999999993
Q 003632 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPE-DLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEAC 266 (806)
Q Consensus 188 ~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~-dl~~~vyL~~~~i~P~~e~~elgIge~~LiKal~~~~ 266 (806)
|+-|+|+.||++|+.|++|++|++|+++|++||+.+ +|+ ++.+++||++|+++|+|++++||||++.|+|++++++
T Consensus 1 ~~~m~~~~~a~~~~~i~~t~~r~~k~~~l~~~~~~~---~~~~~~~~~~~l~~g~~~p~~~~~~~gi~~~~l~~~~~~~~ 77 (558)
T 3gde_A 1 GSHMLFAEFAEFCERLEKISSTLELTARIAAFLQKI---EDERDLYDVVLFITGKVYPPWDERELGVGIGLLYEALENVS 77 (558)
T ss_dssp CCSCBHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTC---CSHHHHHHHHHHHTTCSSCTTSSCCCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 996639999999999986338899999999999758---96120899999972997865334240768689999999997
Q ss_pred CCCHHHHHHHHHHCCCHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999899999986308977877420--134676678998779999999999999829990899999999999863977289
Q 003632 267 GRTESHVKKQYQEMGDLGLVAKAS--RSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQ 344 (806)
Q Consensus 267 G~s~~~ik~~y~~~GDlg~vA~~~--r~~q~~l~~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~~il~~LL~~~t~~E~k 344 (806)
|++++.+++.|++.||+|++|+.. ++.|.+++ +++|||.+||+.|++||..+|++|+++|..+|..|+.+|++.|++
T Consensus 78 g~~~~~~~~~~~~~GDlg~~a~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~l~~~~~~~E~~ 156 (558)
T 3gde_A 78 GVKRSEIESMIREYGDLGLVAEQLIKKKKMTTLA-FEELTVRKVRETFDEIASLTGEGSMKRKIMLLTGLYGLATPLEAR 156 (558)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHHSCC-CCCCBHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9699999999886599999999987306677778-999969999999999983448776899999999999849999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999820014764388999999864402677999999986418999999998951399445647655303864568865
Q 003632 345 YLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTC 424 (806)
Q Consensus 345 ~LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~~l~~~l~~a~~~~~~~y~~~pd~~~i~~~l~~~g~~~l~~~~ 424 (806)
||+|||+++||||+++++|+.||++||..++ ..+.++|+.++||+.+++.+.+.|...+. .+
T Consensus 157 ~l~rli~~~lRiG~~~~~vl~ala~a~~~~~-----------------~~~~~~~~~~~dl~~v~~~l~~~g~~~l~-~~ 218 (558)
T 3gde_A 157 YLTRLILNEMRLGVGEGIMRDAIARAFRADP-----------------ETVERAYMITNDLGRVAVVAKKEGEEGLR-KM 218 (558)
T ss_dssp HHHHHHTTCCCSSCCHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCH-----------------HHHHHHHCCCCCHHHHHHHHHHCCCCCCC-CC
T ss_conf 9999874556015468899999999848999-----------------99999963499648899987515733212-26
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 55899977643355579947898531797136764256076999992199399991589757788402899987403899
Q 003632 425 SFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPS 504 (806)
Q Consensus 425 ~i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi~~~l~~~~~~~ 504 (806)
.+++|+|++||||++++++++++++++ +|++|+||||+|+|+|+. +|+|++|||+|+++|..||++++++...++.
T Consensus 219 ~~~~~~p~~PmLA~~~~~~~~~~~~~~--~~~~E~K~DG~R~qi~~~-g~~v~l~SR~g~d~t~~fPel~~~~~~~l~~- 294 (558)
T 3gde_A 219 KIEIHIPVRMMLAQVAESLESAVREMR--TAAVEWKFDGSRVQVHWD-GSRVTIYSRRLENVTNALPDIVEEIKKSVKP- 294 (558)
T ss_dssp CCCTTSCCCCCEEEECSCHHHHHHHSS--SEEEEEECSSEEEEEEEC-SSCCEEEETTCCBCGGGCHHHHHHHHHHBCS-
T ss_pred CCCCCCCCCCEECCCCCCHHHHHHHCC--CEEEEEEEEEEEEEEEEE-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC-
T ss_conf 788999877716886797277762034--638997083099999995-9999998699981432066999999966899-
Q ss_pred CCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCC--CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9995997989988068785479478987431157845--64244399996643218944658739999999997312289
Q 003632 505 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLS--DIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 582 (806)
Q Consensus 505 v~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~--~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~L~~li~~~~ 582 (806)
++|||||+|+++ +|+++|||.|++|.++..... ....+++|++||+||+|| ++++.||.+||++|++++.+ +
T Consensus 295 --~~iLDGElv~~~--~g~~~~F~~L~~r~~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~ 368 (558)
T 3gde_A 295 --GVILDGEVIAVK--EGKPMPFQHVLRRFRRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-S 368 (558)
T ss_dssp --SEEEEEEEEEEE--TTEEECHHHHHHHHHC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-C
T ss_pred --CEEEEEEEEECC--CCCCCCHHHHHHHHCCCCCHHHHHHCCCEEEEEEEEEEECC-CCCCCCHHHHHHHHHHHCCC-C
T ss_conf --857876799868--99687999999985146645667621770999999884089-86679999999999986577-8
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 80899867760999999999999988089424897089999855899999907971532233588633899999807898
Q 003632 583 GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGK 662 (806)
Q Consensus 583 ~~i~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~~~dtlDlVVIGa~~G~Gk 662 (806)
+++.+++...+.+.+++.++|+++++.|+||||+|++ +|+|+||+|+.+|+|+|+++ +++|+||||+++|+|+
T Consensus 369 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----~t~D~vViG~~~g~Gk 441 (558)
T 3gde_A 369 EKIKLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLP--SSPYIPGKRGKNWLKVKAIM-----ETLDLVVVGGEWGEGK 441 (558)
T ss_dssp SSEEECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCBCCTTCEEEEEEEEESSC-----CCEEEEEEEEEECCTT
T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCCEEEEECCC-----CEEEEEEEEEEECCCC
T ss_conf 8199963586189999999999999759961688627--88878999688628983356-----4178999999818987
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECEEE
Q ss_conf 88850379999960899838991001689899999999974011568999987445788899379427628999951010
Q 003632 663 RTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLT 742 (806)
Q Consensus 663 r~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~~~~~~~~pdvwi~P~~V~EVk~~eit 742 (806)
|+|++|+|+||+||+++|+|++||+|||||||++++++++.++++++... .|++|++|..||||+|+++|
T Consensus 442 r~g~~g~lllg~~d~~~g~l~~vgkvgsGftd~~~~~l~~~l~~~~~~~~----------~~~vwv~P~lV~EV~~~~~t 511 (558)
T 3gde_A 442 RSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQ 511 (558)
T ss_dssp GGGSEEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEEE----------TTEEEECSCCEEEEECSEEE
T ss_pred CCCCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC----------CCCEEECCCEEEEEEEEEEE
T ss_conf 66752307999861799979998456788999999999998775435678----------99079258579999975656
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 18543234564479998301211875785699915889999999999994102
Q 003632 743 ISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLN 795 (806)
Q Consensus 743 ~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t~~~i~ely~~q~~~ 795 (806)
.|++|++ |++||||||+|+|+||+|+||+|+++|.+||+.|+..
T Consensus 512 ~s~~~~~---------g~~LRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~~ 555 (558)
T 3gde_A 512 KSPKYES---------GYALRFPRFVRLRDDKDVDEADTIERVENLYKLQFEV 555 (558)
T ss_dssp ECSSSTT---------SEEEESCEEEEECTTCCGGGSCBHHHHHHHHHTTC--
T ss_pred CCCCCCC---------CCEEECCEEEEEECCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 2776678---------9778886787987899957787999999999976765
No 4
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=1.00 E-value=1 Score=947.33 Aligned_cols=555 Identities=30% Similarity=0.517 Sum_probs=508.3
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 33699999999999201649999999999986324999865769998819768986654027777999999999939998
Q 003632 191 VPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACGRTE 270 (806)
Q Consensus 191 v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~dl~~~vyL~~~~i~P~~e~~elgIge~~LiKal~~~~G~s~ 270 (806)
|+|+.||++|+.|++|++|++|+++|++||+.. +|+|+.+++||++|+++|+|++++||||++.|+|++++++|+++
T Consensus 1 ~~f~~~a~~~~~l~~t~~r~~k~~~l~~~~~~~---~~~d~~~~~~ll~~~l~P~~~~~~~gi~~~~L~~~~~~~~g~~~ 77 (561)
T 2cfm_A 1 MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKV---PDDHLEFIPYLILGEVFPEWDERELGVGEKLLIKAVAMATGIDA 77 (561)
T ss_dssp CBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHS---CGGGTTTHHHHHTTCSSCTTCCCCCCCCHHHHHHHHHHHHSCCH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 938999999999997438799999999999866---91678999999809988653452228787999999999979199
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999998630897787742013467--66789987799999999999998299908999999999998639772899999
Q 003632 271 SHVKKQYQEMGDLGLVAKASRSSQS--MMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQYLIR 348 (806)
Q Consensus 271 ~~ik~~y~~~GDlg~vA~~~r~~q~--~l~~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~~il~~LL~~~t~~E~k~LvR 348 (806)
+.+++.|++.||+|++|+.+++.+. +++ +++|||.+||+.|++||..+|++||++|..+|..|+.+|++.|++||+|
T Consensus 78 ~~~~~~~~~~GDlg~~~~~~~~~~~~~~~~-~~~ltv~~V~~~L~~la~~~g~~s~~~k~~~l~~ll~~~~~~e~~~l~r 156 (561)
T 2cfm_A 78 KEIEESVKDTGDLGESIALAVKKKKQKSFF-SQPLTIKRVYQTLVKVAETTGEGSQDKKVKYLADLFMDAEPLEAKYLAR 156 (561)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTCCC-CCCCBHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999886598999999985037676767-8999699999999999713375549999999999999699999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98200147643889999998644026779999999864189999999989513994456476553038645688655589
Q 003632 349 LLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTDGVWNLSNTCSFTP 428 (806)
Q Consensus 349 iIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~~l~~~l~~a~~~~~~~y~~~pd~~~i~~~l~~~g~~~l~~~~~i~~ 428 (806)
||+++||||+++++|+.|||+||... ...++++|+.+|||+.++..+++.|...+. .+.+++
T Consensus 157 li~~~lriG~~~~~vl~ala~a~~~~-----------------~~~v~~~~~~~~~l~~v~~~l~~~g~~~l~-~~~~~~ 218 (561)
T 2cfm_A 157 TILGTMRTGVAEGLLRDAIAMAFHVK-----------------VELVERAYMLTSDFGYVAKIAKLEGNEGLA-KVQVQL 218 (561)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HCCCCT
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCC-----------------HHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-CCCCCC
T ss_conf 97266602655778999999874678-----------------899999973399889999999733623212-267888
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 99776433555799478985317971367642560769999921993999915897577884028999874038999995
Q 003632 429 GIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSF 508 (806)
Q Consensus 429 g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi~~~l~~~~~~~v~~~ 508 (806)
|+|++||||+++++++++++++++ +|++|+||||+|+|+|+. +|.+++|||+|+++|..||++.+.+...++ +.++
T Consensus 219 ~~P~~PmLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~~i~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~~l~--~~~~ 294 (561)
T 2cfm_A 219 GKPIKPMLAQQAASIRDALLEMGG-EAEFEIKYDGARVQVHKD-GSKIIVYSRRLENVTRAIPEIVEALKEAII--PEKA 294 (561)
T ss_dssp TSCCCCCEEEEESCHHHHHHHTTS-CEEEEEECCSEEEEEEEE-TTEEEEECTTCCBCGGGCHHHHHHHHHHBC--SSEE
T ss_pred CCCCCCEECCCCCCHHHHHHHCCC-CEEEEEEECEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CCCE
T ss_conf 999878117857875688762388-679998084098999997-999999949998845441669999997578--7666
Q ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCC--CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 997989988068785479478987431157845--642443999966432189446587399999999973122898089
Q 003632 509 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLS--DIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFQ 586 (806)
Q Consensus 509 ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~--~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~L~~li~~~~~~i~ 586 (806)
|||||+|++| .+|+++|||.|++|.++..... ....+++|++|||||+||+++++.||.+||++|++++.+. +++.
T Consensus 295 iLDGElv~~d-~~g~~~~F~~L~~r~~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~ 372 (561)
T 2cfm_A 295 IVEGELVAIG-ENGRPLPFQYVLRRFRRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIK 372 (561)
T ss_dssp EEEEEEEEBC-TTSSBCCTHHHHHHHHCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEE
T ss_pred EEEEEEEEEC-CCCCCCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC-CCEE
T ss_conf 8655899974-8995668999998750465422202457559999988868884732389999999999970768-8589
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 98677609999999999999880894248970899998558999999079715322335886338999998078988885
Q 003632 587 FATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV 666 (806)
Q Consensus 587 ~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~~~dtlDlVVIGa~~G~Gkr~g~ 666 (806)
++++..+.+.+++.++|++++++|+||||+|++ +|+|+||+|+.+|+|+|++| |++|+||||+++|+|+|+|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~-----dt~D~vViG~~~g~Gkr~g~ 445 (561)
T 2cfm_A 373 VAENLITKKVEEAEAFYKRALEMGHEGLMAKRL--DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHL 445 (561)
T ss_dssp ECCEEEESCHHHHHHHHHHHHHTTCCEEEEECT--TCCCCTTCEEEEEEEECSSC-----CCEEEEEEEEEECSGGGTTS
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCCEEEECCCC-----CCEEEEEEEEEECCCCCCCC
T ss_conf 833498188999999999999749955688678--99788999288808983667-----63428999998089987775
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECEEECCCC
Q ss_conf 03799999608998389910016898999999999740115689999874457888993794276289999510101854
Q 003632 667 YGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPV 746 (806)
Q Consensus 667 ~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~~~~~~~~pdvwi~P~~V~EVk~~eit~S~~ 746 (806)
+|+|+|||||+++++|++||+|||||||++++++.+.+++++++. ..|++|++|..||||+|+++|.|+.
T Consensus 446 ~g~lllg~~d~~~~~~~~vgkvgsGftd~~~~~l~~~l~~~~~~~----------~~~~~wv~P~~V~EV~~~~~t~s~~ 515 (561)
T 2cfm_A 446 FGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKE----------EGKRVWLQPKVVIEVTYQEIQKSPK 515 (561)
T ss_dssp EEEEEEEEECTTTCCEEEEEEECSSCCHHHHHHHHHHHGGGEEEE----------ETTEEEECSCCEEEEECSEEECCSS
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC----------CCCEEEECCCEEEEEEEEEEECCCC
T ss_conf 011899998389984999868678899999999999876425465----------7980896786399999889875776
Q ss_pred CCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 32345644799983012118757856999158899999999999941029999
Q 003632 747 HRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNN 799 (806)
Q Consensus 747 y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t~~~i~ely~~q~~~~~~~ 799 (806)
|+. |++||||||+|+|+||+|+||+|++++.+||+.|+.+.++.
T Consensus 516 ~~~---------G~~lRfPrf~r~R~DK~~~ea~t~~~l~~l~~~q~~~~~~~ 559 (561)
T 2cfm_A 516 YRS---------GFALRFPRFVALRDDKGPEDADTIERIAQLYELQEKMKGKV 559 (561)
T ss_dssp STT---------SCEEESCEEEEECTTSCGGGSCBHHHHHHHHHHHHHHHHTC
T ss_pred CCC---------CCEEECCEEEEEECCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 678---------98888618999848999588889999999999866541346
No 5
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=937.28 Aligned_cols=553 Identities=27% Similarity=0.450 Sum_probs=486.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99633699999999999201649999999999986324999865769998819768986654027777999999999939
Q 003632 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVMETTPEDLVPVVYLAANKIAPAHEGLELGIGDASIIKALAEACG 267 (806)
Q Consensus 188 ~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~~~p~dl~~~vyL~~~~i~P~~e~~elgIge~~LiKal~~~~G 267 (806)
.+.|+|..||++|+.|++|++|++|+++|++||+.+ .+++++...+|+++++|+|+|++++|||++++|+|+|++++|
T Consensus 4 ~~d~~F~~f~~l~~~ie~~s~r~~k~~il~~~~~~~--~~~~~~~~~~y~~~~~l~P~~~~~~~gi~ek~l~k~~~~~~g 81 (579)
T 3l2p_A 4 HKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKG--SAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFN 81 (579)
T ss_dssp SGGGBHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCC---------CCHHHHHHHHCTTTSCCCCSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 666859999999999972437589999999999845--775545432999999858775686358868999999999979
Q ss_pred CCHHHHHHHHHHCCCHHHHHHHCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 998999999863089778774201--346766789987799999999999998299908999999999998639772899
Q 003632 268 RTESHVKKQYQEMGDLGLVAKASR--SSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKKNRIKALLVAATDCEPQY 345 (806)
Q Consensus 268 ~s~~~ik~~y~~~GDlg~vA~~~r--~~q~~l~~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~~il~~LL~~~t~~E~k~ 345 (806)
++.+.+++.| +.||+|+++.... +.+.....+++|||.+||+.|++||+.+|++||. .+|..|+.+|++.|++|
T Consensus 82 ~~~~~~~~~~-~~GD~~~~~~~~~~~~~~~~~~~~~~LTv~~V~~~L~~ia~~~g~~sq~---~~l~~l~~~~~~~E~k~ 157 (579)
T 3l2p_A 82 CNPDDMARDL-EQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQ---QALQDIASRCTANDLKC 157 (579)
T ss_dssp SCHHHHHHHG-GGSCHHHHHHHHHHSCSSSCCCSSCCCBHHHHHHHHHHHHTCCSHHHHH---HHHHHHHTTCCSHHHHH
T ss_pred CCHHHHHHHH-HCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHCCHHHHHH
T ss_conf 6999999998-7699899999998605678888999865999999999998531958899---99999998699999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC--------CC
Q ss_conf 9999820014764388999999864402677999999986418999999998951399445647655303--------86
Q 003632 346 LIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKIVPALLTD--------GV 417 (806)
Q Consensus 346 LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~~l~~~l~~a~~~~~~~y~~~pd~~~i~~~l~~~--------g~ 417 (806)
|+|+|+++||||+++++|+.|||+++ .++|+.++|++.++..++.. |.
T Consensus 158 l~R~i~~~lriG~~e~~vl~a~~~~a------------------------~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 213 (579)
T 3l2p_A 158 IIRLIKHDLKMNSGAKHVLDALDPNA------------------------YEAFKASRNLQDVVERVLHNAQEVEKEPGQ 213 (579)
T ss_dssp HHHHHTTCCSSSCCHHHHHHTTCTTH------------------------HHHHHHSCCHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCHHH------------------------HHHHHHCCCHHHHHHHHHHHCHHHHCCCCC
T ss_conf 99999766512654437898758779------------------------999862687999999998512233126552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHH--
Q ss_conf 456886555899977643355579947898531797136764256076999992199399991589757788402899--
Q 003632 418 WNLSNTCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVL-- 495 (806)
Q Consensus 418 ~~l~~~~~i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi~~-- 495 (806)
..+ ..+.+.+|.|++||||+++++++++++++++ .|++|+||||+|+|+|++ +++|++|||||+++ +|++..
T Consensus 214 ~~~-~~~~~~~~~pv~PMLA~~~~~~~~~~~~~~~-~~~~E~K~DG~R~qih~~-g~~v~l~SR~g~~~---~p~~~~~l 287 (579)
T 3l2p_A 214 RRA-LSVQASLMTPVQPMLAEACKSVEYAMKKCPN-GMFSEIKYDGERVQVHKN-GDHFSYFSRSLKPV---LPHKVAHF 287 (579)
T ss_dssp ----CCCCCCTTSCCCCCEEEECCCHHHHHHHCTT-CEEEEECCCSEEEEEEEE-TTEEEEECTTSCBC---CGGGTTTG
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC-CEEEEECCCCEEEEEEEE-CCEEEEECCCCCCC---CHHHHHHH
T ss_conf 211-2345677998778408967888999862788-759997558589999997-99999999999816---73688889
Q ss_pred --HHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf --987403899999599798998806878547947898743115784564244399996643218944658739999999
Q 003632 496 --AVSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREH 573 (806)
Q Consensus 496 --~l~~~~~~~v~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~ 573 (806)
.+...++ ...++|||||+|+||+++|+++|||.|+++.++.. ...++||++|||||+||++|++.||.+||++
T Consensus 288 ~~~l~~~~~-~~~~~iLDGElv~~d~~~g~~~~F~~L~~~~~~~~----~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~ 362 (579)
T 3l2p_A 288 KDYIPQAFP-GGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAF----QDANVCLFVFDCIYFNDVSLMDRPLCERRKF 362 (579)
T ss_dssp GGTHHHHST-TCSEEEEEEEEEEBCTTTCCBCCGGGGSHHHHHHC----SSCCEEEEEEEEEEETTEECTTSCHHHHHHH
T ss_pred HHHHHHHCC-CCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 998887547-67866887589987378896367899877766542----4687599999710408984344899999999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCC--CCCCCCE
Q ss_conf 99731228980899867760999999999999988089424897089999855899999907971532233--5886338
Q 003632 574 LYDSFEEEPGFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES--IGDSLDL 651 (806)
Q Consensus 574 L~~li~~~~~~i~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~--~~dtlDl 651 (806)
|++++.+.++++.+++...+.+.+++.++|+++++.|+||||+|++ +|+|+||+| +|+|+|++|+++ +++++|+
T Consensus 363 L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~g~EGlv~K~~--ds~Y~~Grr--~WlK~K~~y~~~g~~~~t~D~ 438 (579)
T 3l2p_A 363 LHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDV--KGTYEPGKR--HWLKVKKDYLNEGAMADTADL 438 (579)
T ss_dssp HHHHCCCBTTTEEECCEEEECSHHHHHHHHHHHHHTTCCCEEEEES--SCCCCTTCE--EEEEECTTTCC---CCEEEEE
T ss_pred HHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCE--EEEEEECHHHCCCCCCCCCCE
T ss_conf 9998504797089763587288899999999999718973377547--678899982--068971332056655564558
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCEE
Q ss_conf 9999980789888850379999960899838991001689899999999974011568999----987445788899379
Q 003632 652 VPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP----RPYYRFADTISPDVW 727 (806)
Q Consensus 652 VVIGa~~G~Gkr~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p----~~~~~~~~~~~pdvw 727 (806)
||||+++|+|+|+|++|+|+||+||+++++|++||+|||||||++++++.+.+.++.++.+ +.|+++.....|++|
T Consensus 439 vViG~~~G~Gkr~g~~g~lllg~~d~~~~~l~~vgkvgtGftd~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pd~~ 518 (579)
T 3l2p_A 439 VVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYYPDFI 518 (579)
T ss_dssp EEEEEECCCTTSCSSCCEEEEEEECTTTSSEEEEEEECTTCCHHHHHHTTTSSCCCCCCC--------------------
T ss_pred EEEEEEECCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEE
T ss_conf 99999958988788425799999837998589965766889999999999974112346687668742421777789679
Q ss_pred E-CC--CEEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4-27--628999951010185432345644799983012118757856999158899999999999941
Q 003632 728 F-EP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 793 (806)
Q Consensus 728 i-~P--~~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t~~~i~ely~~q~ 793 (806)
+ +| ..||||+|++++.||.|++ .|+|||||||+|+|+||+|+||+|+++|.+||+.++
T Consensus 519 ~~~P~~~~V~Ei~~~~i~~S~~~~~--------~G~sLRFPR~~riR~DK~~~ea~t~~~l~~l~~~~~ 579 (579)
T 3l2p_A 519 VPDPKKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 579 (579)
T ss_dssp ------CEEEEEEESCEEECTTSSS--------TTEEESSCEECCCCSSCCSSSSCBHHHHHHHHHTCC
T ss_pred EECCCCCEEEEEEEEEEEECCCCCC--------CCEEEECCEEEEEECCCCHHHCCCHHHHHHHHHHCC
T ss_conf 8468887699998568742587446--------877888886778768999577879999999996449
No 6
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=531.03 Aligned_cols=305 Identities=25% Similarity=0.336 Sum_probs=264.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 58999776433555799478985317971367642560769999921993999915897577884028999874038999
Q 003632 426 FTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSV 505 (806)
Q Consensus 426 i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi~~~l~~~~~~~v 505 (806)
.++|.|++||||++++ ++. +.+.+|++|+||||+|+|+|+. +|+|++|||+|+++|..||++..++..+ +.
T Consensus 3 ~~~~~p~~PmLA~~~~-~~~----~~~~~~~~E~K~DG~R~~~~~~-~g~v~l~SR~g~~~t~~fPel~~~~~~l-~~-- 73 (310)
T 1vs0_A 3 VFEFDNLAPMLATHGT-VAG----LKASQWAFEGXWDGYRLLVEAD-HGAVRLRSRSGRDVTAEYPQLRALAEDL-AD-- 73 (310)
T ss_dssp -CCGGGCCCCEEEECC-CTT----CCTTTEEEEEECCSEEEEEEEE-TTEEEEEETTCCBCGGGCGGGHHHHHHT-TT--
T ss_pred CCCCCCCCCEECCCCC-CCC----CCCCCEEEEECCCCEEEEEEEE-CCEEEEECCCCCCCHHHCHHHHHHHHHC-CC--
T ss_conf 8899986670798738-875----6799889998548599999998-9999999099989532162378899737-87--
Q ss_pred CCEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 99599798998806878547947898743115784564244399996643218944658739999999997312289808
Q 003632 506 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFF 585 (806)
Q Consensus 506 ~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~L~~li~~~~~~i 585 (806)
.++|||||||++|. .|+ .+|+.|++|.++. +++|++|||||+||+++++.||.+|+++|++++.+. ++
T Consensus 74 ~~~iLDGElv~~d~-~g~-~~F~~l~~r~~~~--------~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~--~i 141 (310)
T 1vs0_A 74 HHVVLDGEAVVLDS-SGV-PSFSQMQNRGRDT--------RVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANAT--SL 141 (310)
T ss_dssp CEEEEEEEEECBCT-TSC-BCHHHHHTCCTTS--------CCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHS--CC
T ss_pred CCEEEEEEEEEECC-CCC-CCHHHHHHHCCCC--------CEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCC--CE
T ss_conf 65797469999889-997-5989997444487--------489999980879983961389999999999853678--38
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99867760999999999999988089424897089999855899999907971532233588633899999807898888
Q 003632 586 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTG 665 (806)
Q Consensus 586 ~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~~~dtlDlVVIGa~~G~Gkr~g 665 (806)
+++++... ++.++|++++++|+||||+|++ +|+|++|+|+.+|+|+|++| ++|+||+|+++|+|+++|
T Consensus 142 ~~~~~~~~----~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G~Rs~~WlK~K~~~------~~D~vv~G~~~g~G~r~g 209 (310)
T 1vs0_A 142 TVPELLPG----DGAQAFACSRKHGWEGVIAKRR--DSRYQPGRRCASWVKDKHWN------TQEVVIGGWRAGEGGRSS 209 (310)
T ss_dssp CCCCCCCS----SHHHHHHHHHHTTCCEEEEEET--TCCCCTTCEEEEEEEEESSE------EEEEEEEEEEC-------
T ss_pred EECCCCCH----HHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCHHHHCCCHHE------EEEEEEEEEECCCCCCCC
T ss_conf 97761833----7999999999739964799678--99758999476891210022------789999999868997467
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-C-CCCCCCCEEECCCEEEEEEECEEEC
Q ss_conf 5037999996089983899100168989999999997401156899998744-5-7888993794276289999510101
Q 003632 666 VYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR-F-ADTISPDVWFEPTEVWEVKAADLTI 743 (806)
Q Consensus 666 ~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~~-~-~~~~~pdvwi~P~~V~EVk~~eit~ 743 (806)
++|+|+||+||++ | ++++|+||||||+++++++++.+++++++.|+ +.. . +....|++|++|..||||+|+++|.
T Consensus 210 ~~g~lllg~~d~~-g-~~~vgkvgtGftd~~~~~l~~~l~~~~~~~~p-~~~~~~~~~~~~~~wv~P~~V~ev~~~~~t~ 286 (310)
T 1vs0_A 210 GVGSLLMGIPGPG-G-LQFAGRVGTGLSERELANLKEMLAPLHTDESP-FDVPLPARDAKGITYVKPALVAEVRYSEWTP 286 (310)
T ss_dssp -CCEEEEEEEETT-E-EEEEEEECSSCCHHHHHHHHHHHGGGBCSSCS-BSSCCCHHHHTTEEEBCTTCEEEEEESCBCT
T ss_pred CCCEEEEEEECCC-C-CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCEEECCCEEEEEEEEEECC
T ss_conf 6220899998499-9-78999988889999999999998752567798-5456875557897997688899999879868
Q ss_pred CCCCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCC
Q ss_conf 85432345644799983012118757856999158899
Q 003632 744 SPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASS 781 (806)
Q Consensus 744 S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~~ea~t 781 (806)
+++||||||+|+|+||+|+||+.
T Consensus 287 ---------------~g~lRfP~f~r~R~DK~~~~~~~ 309 (310)
T 1vs0_A 287 ---------------EGRLRQSSWRGLRPDKKPSEVVR 309 (310)
T ss_dssp ---------------TSCBTTCEEEEECTTSCGGGCCC
T ss_pred ---------------CCEEECEEEEEEECCCCHHHHCC
T ss_conf ---------------99197628879708989899077
No 7
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=1.00 E-value=1 Score=476.18 Aligned_cols=306 Identities=19% Similarity=0.174 Sum_probs=255.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCC------CCCHHHHH
Q ss_conf 655589997764335557994789853179713676425607699999219939999158975778------84028999
Q 003632 423 TCSFTPGIPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTG------KFPDVVLA 496 (806)
Q Consensus 423 ~~~i~~g~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~------~yPdi~~~ 496 (806)
+++++||+|++|||+. +.+++...+ .|++|+||||+|+|+|+..+|+|++|||+|++++. .||+++++
T Consensus 2 ~~~~~~~~pv~pmL~~----~~~~l~~~~--~~~~E~K~DG~R~~~~~~~~g~v~l~SR~g~~~~~l~~~~~~~p~~~~~ 75 (348)
T 1a0i_A 2 NIKTNPFKAVSFVESA----IKKALDNAG--YLIAEIKYDGVRGNICVDNTANSYWLSRVSKTIPALEHLNGFDVRWKRL 75 (348)
T ss_dssp TTCCCCEEEEECCHHH----HHHHHHHHS--SEEEEECCCSEEEEEEEETTSEEEEECTTSCBCGGGGGGCEECHHHHHH
T ss_pred EEECCCCCCCCHHHHC----HHHHHHHCC--CEEEEEEECEEEEEEEEECCCEEEEECCCCCCCCCHHHHHCCCCHHHHH
T ss_conf 0225579868501336----999972068--5899974560579999938981999868898772144430026048998
Q ss_pred HHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHC------CC-----------CC------CCCCCCEEEEEEE
Q ss_conf 8740389999959979899880687854794789874311------57-----------84------5642443999966
Q 003632 497 VSRLKKPSVRSFVLDCEIVAYDREKQKILPFQTLSTRARK------NV-----------SL------SDIKVDVCIYAFD 553 (806)
Q Consensus 497 l~~~~~~~v~~~ILDGElV~~d~~~g~~~pFq~L~~r~rk------~~-----------~~------~~~~~~v~~~vFD 553 (806)
+...+.....++|||||||+++ .||+.|+++.++ ++ .. .....+++|++||
T Consensus 76 l~~~~~~~~~~~iLDGElv~~~------~~F~~l~~~~~~k~~~~k~v~~~~~~~r~~~~~~~~i~~~~~~~~~~~~vFD 149 (348)
T 1a0i_A 76 LNDDRCFYKDGFMLDGELMVKG------VDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGHLHIKLYA 149 (348)
T ss_dssp HHSTTCCCTTEEEEEEEEEESS------SCTTTHHHHHHCCSCCSSBSSCC--------CCCSCCCCCBCTTTEEEEEEE
T ss_pred HHHHHCCCCCCEEEEEEEEEEC------CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 7654035788789997899707------9989999875524334344332332222234544442111355757999983
Q ss_pred EEECC----CCCC---CCCCHHHHHHHHHHHHCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 43218----9446---58739999999997312289-8089986776099999999999998808942489708999985
Q 003632 554 ILYRN----GQPL---LQEQLRVRREHLYDSFEEEP-GFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATY 625 (806)
Q Consensus 554 iLyln----G~~L---~~~Pl~eRr~~L~~li~~~~-~~i~~v~~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y 625 (806)
|||+| |+++ ++.||.+|+++|++++...+ ..+++++...+++.+++.++|++++++|+||||+|++ +|+|
T Consensus 150 ll~l~~~~~G~~l~~~~~~pl~eRr~~L~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y 227 (348)
T 1a0i_A 150 ILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQLYEQKRAEGHEGLIVKDP--MCIY 227 (348)
T ss_dssp EEEHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCTTSEEEECCEEEESSHHHHHHHHHHHHTTTCCCEEEECT--TCEE
T ss_pred EEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCC
T ss_conf 17607877895422310678999999999975117987199715186499999999999998769856888679--9987
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCC--CCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 58999999079715322335886338999998078988--8850379999960899838991001689899999999974
Q 003632 626 EPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKR--TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSS 703 (806)
Q Consensus 626 ~pgkRs~~WlKiK~dY~~~~~dtlDlVVIGa~~G~Gkr--~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~ 703 (806)
++|+|++ |||+|++| ++|+||||+++|+|+| +|++++|+|. ++ +|+|++ ||||||++++++++.
T Consensus 228 ~~Grr~~-wlK~K~~~------~~D~vViG~~~g~g~r~~~g~~~~~~~~-~~--~g~~~~----gtGftd~~~~~l~~~ 293 (348)
T 1a0i_A 228 KRGKKSG-WWKMKPEN------EADGIIQGLVWGTKGLANEGKVIGFEVL-LE--SGRLVN----ATNISRALMDEFTET 293 (348)
T ss_dssp CSEEEEE-EEEESCCE------EEEEEEEEEECCCTTTSSCSSCCEEEEE-CT--TSCEEE----EBCCCSHHHHHHHHH
T ss_pred CCCCCCC-CEEEEECC------CEEEEEEEEEECCCCCCCCCEEEEEEEE-EC--CCCEEE----CCCCCHHHHHHHHHH
T ss_conf 8988057-27970046------0789999778389974478617789999-47--998898----559999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEECCC--EEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEE
Q ss_conf 0115689999874457888993794276--2899995101018543234564479998301211875785
Q 003632 704 LRSKVIPKPRPYYRFADTISPDVWFEPT--EVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVR 771 (806)
Q Consensus 704 l~~~~i~~p~~~~~~~~~~~pdvwi~P~--~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR 771 (806)
++++++..+.+.+.......+++|++|. .||||+|+++|.+ | +||||||+|+|
T Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~wv~P~~g~v~eV~~~~~t~~--------------G-~lRfP~f~~~R 348 (348)
T 1a0i_A 294 VKEATLSQWGFFSPYGIGDNDACTINPYDGWACQISYMEETPD--------------G-SLRHPSFVMFR 348 (348)
T ss_dssp HHHHHTTTSCCC--------CCCCCCTTTTCEEEEEESEECTT--------------S-CEESCEEEEEC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEECCC--------------C-CEECCEEEEEC
T ss_conf 8643234579864456778885777588767999994055689--------------9-50888476739
No 8
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=1.00 E-value=1 Score=416.04 Aligned_cols=264 Identities=18% Similarity=0.220 Sum_probs=226.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 97764335557994789853179713676425607699999219939999158975778840289998740389999959
Q 003632 430 IPIGPMLAKPTKGVSEIVNKFQDMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVLAVSRLKKPSVRSFV 509 (806)
Q Consensus 430 ~PikPMLA~~~~~i~~~~~k~~~~~~~~E~K~DG~R~qIh~~~~g~V~ifSR~g~~~T~~yPdi~~~l~~~~~~~v~~~I 509 (806)
.+++||||++++...+ .+.+|++|+||||+|+|+ +| ++|||+|+++|. |++.+.+...+ ++|
T Consensus 1 ~~~~PmLA~~~~~~~~-----~~~~~~~E~K~DG~R~~~----~g--~l~SR~g~~~t~--p~l~~~~~~~~-----~~i 62 (297)
T 1fvi_A 1 AITKPLLAATLENIED-----VQFPCLATPKIAGIRSVK----QT--QMLSRTFKPIRN--SVMNRLLTELL-----PEG 62 (297)
T ss_dssp CCSSCCBCEECCCGGG-----CCSSEEEEECCCSEEEEE----SS--SEECTTSCBCSC--HHHHHHHHHHS-----CTT
T ss_pred CCCCCEECCCCCCCCC-----CCCCEEEEEEEEEEEEEE----CC--EEECCCCCCCCC--HHHHHHHHHCC-----CEE
T ss_conf 9857614882586757-----888599995683245896----48--999999963596--77999998668-----923
Q ss_pred EEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC-----C
Q ss_conf 97989988068785479478987431157845642443999966432189446587399999999973122898-----0
Q 003632 510 LDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG-----F 584 (806)
Q Consensus 510 LDGElV~~d~~~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~L~~li~~~~~-----~ 584 (806)
||||+|+. + .+|+.+++|.++.... ...+++|++|||||+| ++.||.+|++.|++++.+.+. .
T Consensus 63 LDGElv~~-----~-~~F~~l~~~~~~~~~~--~~~~~~~~vFDll~l~----~~~pl~eRr~~L~~~~~~~~~~~~~~~ 130 (297)
T 1fvi_A 63 SDGEISIE-----G-ATFQDTTSAVMTGHKM--YNAKFSYYWFDYVTDD----PLKKYIDRVEDMKNYITVHPHILEHAQ 130 (297)
T ss_dssp EEEEEECT-----T-SCHHHHHHHHHSCC------CCEEEEEEEECSSC----TTSCHHHHHHHHHHHHHHCGGGGGCSS
T ss_pred EEEEEEEC-----C-CCHHHHHHHHCCCCCC--CCCCEEEEEEECCCCC----CCCCHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 87799978-----8-8989998875657878--7505499999515778----899999999999998745577545631
Q ss_pred EEEEE--EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC----CEEEECCCCCCCCCCCCCEEEEEEEE
Q ss_conf 89986--7760999999999999988089424897089999855899999----90797153223358863389999980
Q 003632 585 FQFAT--TLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSL----NWLKLKKDYIESIGDSLDLVPIAAFH 658 (806)
Q Consensus 585 i~~v~--~~~~~~~eei~~~~~~ai~~G~EGiViK~~~~ds~Y~pgkRs~----~WlKiK~dY~~~~~dtlDlVVIGa~~ 658 (806)
+++++ +..+.+.+++.++|+.++++|+||||+|++ +|+|++| |+. +|||+|+++ ++|+||||+++
T Consensus 131 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~EGlv~K~~--ds~Y~~G-Rs~~~~g~wlK~K~~~------~~d~vVig~~~ 201 (297)
T 1fvi_A 131 VKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKP--DGKYKFG-RSTLKEGILLKMKQFK------DAEATIISMTA 201 (297)
T ss_dssp EEEEECCCEEECSHHHHHHHHHHHHHTTCCSEEEECT--TCCCCSS-BCCTTTTSSEEECCCE------EEEEEEEEEEE
T ss_pred EEECCCCEEECCCHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCC-CCCCCCCCEEEECCCC------CEEEEEEEEEE
T ss_conf 9982752386289999999999998789967798779--9975899-9988789859988789------88899998980
Q ss_pred C---------------------CCCC-CCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7---------------------8988-88503799999608998389910016898999999999740115689999874
Q 003632 659 G---------------------RGKR-TGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYY 716 (806)
Q Consensus 659 G---------------------~Gkr-~g~~g~fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~ 716 (806)
| +|++ .|++|+|+|+.. | .+|+|||||||++++++++...+.
T Consensus 202 g~~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~----g---~~~~vgtGftd~~~~~l~~~~~p~--------- 265 (297)
T 1fvi_A 202 LFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD----G---VVFSIGTGFDADQRRDFWQNKESY--------- 265 (297)
T ss_dssp SCC-------------------CCCTTCCCEEEEEECST----T---CCEEECSSCCHHHHHHHHHTHHHH---------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----C---EEEEECCCCCHHHHHHHHHHCCCC---------
T ss_conf 766544422223354332225789646886889997649----9---399988899999999987556766---------
Q ss_pred CCCCCCCCCEEECCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCC
Q ss_conf 457888993794276289999510101854323456447999830121187578569991
Q 003632 717 RFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTP 776 (806)
Q Consensus 717 ~~~~~~~pdvwi~P~~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~~ 776 (806)
. ..|+||+|.++|.+ | +||||||+|+|+||+|
T Consensus 266 -~------------g~v~ev~~~~~t~~--------------g-~lRfP~f~r~R~Dk~~ 297 (297)
T 1fvi_A 266 -I------------GKMVKFKYFEMGSK--------------D-CPRFPVFIGIRHEEDR 297 (297)
T ss_dssp -T------------TCEEEEEEECC--------------------CEEEEEEEEC-----
T ss_pred -C------------CCEEEEEEEEECCC--------------C-CCCCCEEEEEECCCCC
T ss_conf -6------------84899997776799--------------9-7327869999738889
No 9
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=1.00 E-value=1 Score=316.24 Aligned_cols=266 Identities=20% Similarity=0.241 Sum_probs=197.8
Q ss_pred HHCCCCCEEEEEECCEEEEEEEEE----CCCEEEEEECCCCCCC---CCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECC
Q ss_conf 531797136764256076999992----1993999915897577---884028999874038999995997989988068
Q 003632 448 NKFQDMEFTCEYKYDGERAQIHYL----EDGSVEIYSRNAERNT---GKFPDVVLAVSRLKKPSVRSFVLDCEIVAYDRE 520 (806)
Q Consensus 448 ~k~~~~~~~~E~K~DG~R~qIh~~----~~g~V~ifSR~g~~~T---~~yPdi~~~l~~~~~~~v~~~ILDGElV~~d~~ 520 (806)
..+...+|++|+||||+|+|+|+. .++.+.++||++++++ ..||++.++.+.. .....++|||||||+++..
T Consensus 55 ~~l~~~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~~~~~~i~~~~FP~~~~~~~~~-~~~~~~~vLDGElV~~~~~ 133 (395)
T 1p16_A 55 ETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK-PTYHHGTLLDGELVLENRN 133 (395)
T ss_dssp THHHHSCEEEEEEECSEEEEEEEEEETTTEEEEEEEETTCCEEECCSCCCCSCTTCCSSS-CCCCSSEEEEEEEEEECCS
T ss_pred HHHCCCCEEEEECCCCEEEEEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCH-HCCCCCCEEEEEEEEECCC
T ss_conf 763769779999756269999995235679879999689961770335577630024320-1137760045699985268
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHH-CCC----------------CC
Q ss_conf 7854794789874311578456424439999664321894465873999999999731-228----------------98
Q 003632 521 KQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF-EEE----------------PG 583 (806)
Q Consensus 521 ~g~~~pFq~L~~r~rk~~~~~~~~~~v~~~vFDiLylnG~~L~~~Pl~eRr~~L~~li-~~~----------------~~ 583 (806)
. .+.+++|++||||++||++|+++||.+|++.|++++ .+. +-
T Consensus 134 ~---------------------~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~pf 192 (395)
T 1p16_A 134 V---------------------SEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNPDIVNSPEFPF 192 (395)
T ss_dssp S---------------------SCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCHHHHSCTTSCC
T ss_pred C---------------------CCCEEEEEEEEEEEECCEECCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCE
T ss_conf 8---------------------8521599999878799838303999999999999751556766621754222356762
Q ss_pred CEEEEEEEECCCHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEE---
Q ss_conf 0899867760999999999999--98808942489708999985589999990797153223358863389999980---
Q 003632 584 FFQFATTLTSIDLDEIQKFLDA--AVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFH--- 658 (806)
Q Consensus 584 ~i~~v~~~~~~~~eei~~~~~~--ai~~G~EGiViK~~~~ds~Y~pgkRs~~WlKiK~dY~~~~~dtlDlVVIGa~~--- 658 (806)
.+.+...... ..+.++|+. .+.+|.||||+|+. +++|.+|+ +.+|||||+.+. .|+|+||+++++
T Consensus 193 ~v~~~~~~~~---~~~~~~~~~~~~~~~g~EGlI~K~~--ds~Y~~Gr-~~~wlKwK~~~~----~TvDfvl~~~~~~~~ 262 (395)
T 1p16_A 193 KVGFKTMLTS---YHADDVLSKMDKLFHASDGLIYTCA--ETPYVFGT-DQTLLKWKPAEE----NTVDFQLEFVFNEVQ 262 (395)
T ss_dssp EEEECCCEEG---GGTHHHHTTGGGCSSCEEEEEEEES--SSCCCSEE-EEEEEEECCGGG----CCEEEEEEEECEEEE
T ss_pred EEEEECCHHH---HHHHHHHHHHHHCCCCCCEEEEEEC--CCCCCCCC-CCCEEEEECCCC----EEEEEEEEEEECCCC
T ss_conf 7998310407---8799999777743778885899868--99747998-641389844877----278999997751456
Q ss_pred -----CCCCCCCCC---CE----EEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -----789888850---37----999996089983899100168989999999997401156899998744578889937
Q 003632 659 -----GRGKRTGVY---GA----FLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDV 726 (806)
Q Consensus 659 -----G~Gkr~g~~---g~----fllg~~d~~~g~~~~v~kVgtGfsd~~~~~l~~~l~~~~i~~p~~~~~~~~~~~pdv 726 (806)
|+|++ +++ ++ |.+.+|+++. .++.++++ |||+++++++.+.+.++
T Consensus 263 ~~~~~g~G~~-~~~~dy~~~p~~~~l~v~~~~~-~~~~f~~~--~ltd~e~~~l~~~~~~~------------------- 319 (395)
T 1p16_A 263 DPDLDERDPT-STYLDYDAKPNLIKLRVWQGSN-VHTDFAKL--DLSDDDWERLKALEQPL------------------- 319 (395)
T ss_dssp CTTSCTTSTT-CEEEECSSCCSEEEEEEECSTT-CEEEEEEE--CCCHHHHHHHHHSSSCC-------------------
T ss_pred CCCCCCCCCC-CCCCCCCCCCCEEEEEEEECCC-CCCEEEEE--EECHHHHHHHHHHCCCC-------------------
T ss_conf 6533356766-5445556565136999984896-65145388--72789987767535668-------------------
Q ss_pred EECCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEECCEEEEEECCCC-CCCCCCHHHHHHHHH
Q ss_conf 9427628999951010185432345644799983012118757856999-158899999999999
Q 003632 727 WFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKT-PEQASSSEQVAEMYT 790 (806)
Q Consensus 727 wi~P~~V~EVk~~eit~S~~y~a~~g~~~~~~G~sLRFPRf~riR~DK~-~~ea~t~~~i~ely~ 790 (806)
+..|+|+.+.+ .. .| ||||.|+|+||+ +++.+|++.+.+++.
T Consensus 320 ---~~~IvEc~~~~-~~--------------~g----~wr~~R~R~DK~~pN~~~t~~~vl~si~ 362 (395)
T 1p16_A 320 ---QGRIAECRQST-TK--------------KG----YWEMLRFRNDKSNGNHISVVEKILVSIK 362 (395)
T ss_dssp ---TTCEEEEEECS-SS--------------TT----EEEEEEECTTCSSCCBHHHHHHHHHHHH
T ss_pred ---CCEEEEEEEEC-CC--------------CC----CCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf ---98799999405-77--------------88----6379998289998575999999999987
No 10
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=1.00 E-value=1 Score=291.10 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=175.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHCCCCCCCC--CCCCCCCHHHHH
Q ss_conf 99633699999999999201649999999999986324------9998657699988197689866--540277779999
Q 003632 188 GERVPFIFLSLVFDMISNETGRILITDIVCNMLRTVME------TTPEDLVPVVYLAANKIAPAHE--GLELGIGDASII 259 (806)
Q Consensus 188 ~~~v~F~~La~~fe~I~~ts~R~~k~~iL~~~lr~~i~------~~p~dl~~~vyL~~~~i~P~~e--~~elgIge~~Li 259 (806)
.++|||..||++|+.|++|++|++|+++|++||+.++. .+|++....+|+++++++|+|+ +++||||++.|+
T Consensus 11 ~~~~~F~~l~~~~e~Ie~ts~rl~k~~il~~f~~~~~~~~~~l~~~~~~~~~dly~~l~ll~P~~d~~r~~ygi~e~~L~ 90 (240)
T 4htp_A 11 ASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLA 90 (240)
T ss_dssp GGTSBHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTTCSSCCCCSHHHHHHHSGGGCCSSCCCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 44884999999999998501669999999999999986311124575667205999999868650465554277789999
Q ss_pred HHHHHHHCCCHHHHH-----------HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999399989999-----------998630897787742013467667899877999999999999982999089999
Q 003632 260 KALAEACGRTESHVK-----------KQYQEMGDLGLVAKASRSSQSMMRKPDPLTITKVFDTFRLIAKEAGKDSQEKKK 328 (806)
Q Consensus 260 Kal~~~~G~s~~~ik-----------~~y~~~GDlg~vA~~~r~~q~~l~~~~~LTI~eV~e~L~kLA~~~G~~Sq~~K~ 328 (806)
|+|++++|++.+.++ ..+.+.||+|++|+...+++.. .+++|||.+||+.|++||..+|.+++++|.
T Consensus 91 Kai~~~~g~~~~~~~~~~L~~wk~~~~~~~~~GDlg~va~~~~~~r~~--~~~~LTv~~V~~~L~~IA~~~g~~s~~~k~ 168 (240)
T 4htp_A 91 KLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCL--QKGSLTIQQVNDLLDSIASNNSAKRKDLIK 168 (240)
T ss_dssp HHHHHHTTCCTTSHHHHHHHTC----------CCHHHHHHHHHTTSSC--CSCCCBHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999789840578999874025321136678799999999972478--999867999999999999844866189999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999998639772899999982001476438899999986440267799999998641899999999895139944564
Q 003632 329 NRIKALLVAATDCEPQYLIRLLQSKLRIGLAEQTLLAALGQAAVYNEQHSKPPPNIQSPLEEAAKIVKQVFSVLPVYEKI 408 (806)
Q Consensus 329 ~il~~LL~~~t~~E~k~LvRiIlkdLRiGi~e~til~al~~a~~~~~~~~~~~~~l~~~l~~a~~~~~~~y~~~pd~~~i 408 (806)
.+|..|+.+|++.|++||+|+|+++||||+++++|+.+||+.+ .++|+.++|++.|
T Consensus 169 ~~l~~Ll~~~t~~E~k~liRiil~~lriG~~e~~vl~a~h~~~------------------------~~a~~~~~dL~~V 224 (240)
T 4htp_A 169 KSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDA------------------------AELHNVTTDLEKV 224 (240)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHTCCCCSSCHHHHHHHHCTTH------------------------HHHHHHHCCHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHH------------------------HHHHHHHCCHHHH
T ss_conf 9999999979999999999998510002865869999857609------------------------9999862789999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 765530386456
Q 003632 409 VPALLTDGVWNL 420 (806)
Q Consensus 409 ~~~l~~~g~~~l 420 (806)
+..+. +|...+
T Consensus 225 ~~~l~-~~~~~L 235 (240)
T 4htp_A 225 CRQLH-DPSVGL 235 (240)
T ss_dssp HHHTC-STTSCT
T ss_pred HHHHH-CCHHHH
T ss_conf 99982-805337
Done!