BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003633
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 138/618 (22%), Positives = 252/618 (40%), Gaps = 85/618 (13%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
DS+ K F+ RWS +++K G +A + YD V + + + + + I S
Sbjct: 243 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 300
Query: 236 HELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINI 294
D A V Q G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 301 GNAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMEL 354
Query: 295 DKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADN 354
++GYW + + +T S L+ K +T E+P + A++
Sbjct: 355 KTNGPRKIGYWSEVDKMVLTEDDT--------SGLEQKTVVVTTI---LESPYVMMKANH 403
Query: 355 ARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---- 410
A + G + + +GYC+D+ E K + YK + GDG
Sbjct: 404 A-----------ALAG-------NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGA 443
Query: 411 --LSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGL-VIVAPINNHKA 467
++G+V + D A+ + I R +++DFS+P++S G+ +++ K
Sbjct: 444 RDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKP 503
Query: 468 SAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRV-----NDDFRGPPRRQ--------- 513
+ FL P E+W +++ ++VV++++ ++F Q
Sbjct: 504 GVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFG 563
Query: 514 IATMFLFSFSTLFKTNQEATVSSL-GRXXXXXXXXXXXXITSSYTASLSSILTVQQLSTS 572
I FS + + + SL GR I SSYTA+L++ LTV+++ +
Sbjct: 564 IFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSP 623
Query: 573 VKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRL-------ISLGSPEDYERALRQG 625
++ E L + I Y G+ + R K + + P + R +G
Sbjct: 624 IESAEDL-SKQTEIAY--GTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG 680
Query: 626 -----PRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTA 680
G A +++ + D +G G+G A + S L ++ A
Sbjct: 681 VARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLA 740
Query: 681 ILKLSENGMLQKLHEKWFCKEG-C-PEERRQHSEPHQLRLISFWGL-YLLCGTITFTAFL 737
+LKLSE G+L KL KW+ +G C ++ + L L + G+ Y+L G + A L
Sbjct: 741 VLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGL-AML 799
Query: 738 VFLLRMVCQYVRYKQQQM 755
V L+ C R + ++M
Sbjct: 800 VALIEF-CYKSRAEAKRM 816
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 137/324 (42%), Gaps = 69/324 (21%)
Query: 31 FIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLP 90
F+R+ S Q + +++ Y W +I + DD GR L +LE+ +K L
Sbjct: 117 FLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERESKAEKVL- 175
Query: 91 LPVQFN--QHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDW 148
QF+ ++T LL ++ L RV ++ S D ++ A L M + YVWL +
Sbjct: 176 ---QFDPGTKNVTALLMEARELEARVIILSASEDDAATVYRAAAMLNMTGSGYVWLVGE- 231
Query: 149 LSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGL 208
+++ +LR + PD I L +G + +S
Sbjct: 232 --------REISGNALR----------YAPDGI---IGLQLINGKNESAHIS-------- 262
Query: 209 YAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTN 268
D V VA+++ + + + NIT R + ++ G R L+ +
Sbjct: 263 ---DAVGVVAQAVHELLEKENIT----------DPPRGCVGNTNIWKTGPLFKRVLMSSK 309
Query: 269 FT-GLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHS 327
+ G++G+V+FN+D + Y ++N+ ++ +VG + +G V+P +
Sbjct: 310 YADGVTGRVEFNEDGDRKFANYSIMNLQNRKLVQVGIY---NGTHVIPND---------- 356
Query: 328 QLDWKLQNITWPGGKTETPRGWVI 351
+ I WPGG+TE PRG+ +
Sbjct: 357 ------RKIIWPGGETEKPRGYQV 374
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 131/334 (39%), Gaps = 88/334 (26%)
Query: 31 FIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLE----------- 79
F+R+ S Q +++ + W VI I DD GR L +LE
Sbjct: 115 FLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNY 174
Query: 80 KNMAKVSY------KLPLPVQFN--QHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTA 131
+N+ ++SY K +QF ++T LL +K L RV ++ S D ++ +A
Sbjct: 175 ENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 234
Query: 132 QKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWS 191
L M YVWL + +++ ++LR + PD I L +
Sbjct: 235 AMLDMTGAGYVWLVGE---------REISGSALR----------YAPDGI---IGLQLIN 272
Query: 192 GMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQL 251
G + +S D V VA++I + NIT R +
Sbjct: 273 GKNESAHIS-----------DAVAVVAQAIHELFEMENIT----------DPPRGCVGNT 311
Query: 252 KVFDGGTFLLRKLLQTNF-TGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSG 310
++ G R L+ + + G++G+++FN+D + Y ++N+ ++ +VG F+GS
Sbjct: 312 NIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQVGI-FNGS- 369
Query: 311 FSVLPPETLKGKNVSHSQLDWKLQN---ITWPGG 341
+ +QN I WPGG
Sbjct: 370 --------------------YIIQNDRKIIWPGG 383
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 120/292 (41%), Gaps = 29/292 (9%)
Query: 1 MISEVANGLKVPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
+I+E G + +SFAAT P L+ ++PYF R+ SD+ A+ L+ Y WK V
Sbjct: 100 IIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGT 159
Query: 60 IYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHV 119
+ D + L+ +L ++S + +D + K R+ +
Sbjct: 160 LTQDVQRFSEVRNDLTGVLYGEDIEIS-----DTESFSNDPCTSVKKLKGNDVRIILGQF 214
Query: 120 SPDPGLRIFTTAQKLQMMTNNYVWLATDW--------LSATLESFSKMNQTSLRILQGVV 171
+ ++F A + M + Y W+ W + S + + L ++G +
Sbjct: 215 DQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYI 274
Query: 172 GLRQHTPDSIPKKAFLSRWSGMQ-----QKGLVSAGLNTYGLYAYDTVWAVARSIDKFIN 226
G+ P S + +S + Q G + + YAYD +W +A+++ + +
Sbjct: 275 GV-DFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRAME 333
Query: 227 EHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQF 278
T AS S+ R+Q G +L + +TNF G++GQV F
Sbjct: 334 ----TLHAS-----SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF 376
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 49/295 (16%)
Query: 44 AMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQ---FNQHDI 100
A+ DL+ F+ WK V +Y DD G L + E A Y L L ++ + D
Sbjct: 128 AILDLVQFFKWKTVTVVY-DDSTG------LIRLQELIKAPSRYNLRLKIRQLPADTKDA 180
Query: 101 TVLLNNSKPLGPRVYVV-HVSPDPGLRIFTTAQKLQMMTN--NYVWLATDWLSATLE--S 155
LL K G +V+ S + I A + MMT +Y++ D + +E
Sbjct: 181 KPLLKEMKR-GKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALDVEPYR 239
Query: 156 FSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQ-------QKGLVSAGLNTYGL 208
+S +N T RIL ++ + + +WS + GL+ + T
Sbjct: 240 YSGVNMTGFRILN---------TENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAA 290
Query: 209 YAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTN 268
YD V V+ ++ +F P + +Q + K + GT + + + +
Sbjct: 291 LMYDAVHVVSVAVQQF--------------PQMTVSSLQCNRHKPWRFGTRFMSLIKEAH 336
Query: 269 FTGLSGQVQFNQDRNIVSR-GYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGK 322
+ GL+G++ FN+ + + DVI++ + + ++G W SG ++ E+ KGK
Sbjct: 337 WEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNM--TESQKGK 389
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 49/295 (16%)
Query: 44 AMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQ---FNQHDI 100
A+ DL+ F+ WK V +Y DD G L + E A Y L L ++ + D
Sbjct: 128 AILDLVQFFKWKTVTVVY-DDSTG------LIRLQELIKAPSRYNLRLKIRQLPADTKDA 180
Query: 101 TVLLNNSKPLGPRVYVV-HVSPDPGLRIFTTAQKLQMMTN--NYVWLATDWLSATLE--S 155
LL K G +V+ S + I A + MMT +Y++ D + +E
Sbjct: 181 KPLLKEMKR-GKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYR 239
Query: 156 FSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQ-------QKGLVSAGLNTYGL 208
+S +N T RIL ++ + + +WS + GL+ + T
Sbjct: 240 YSGVNMTGFRILN---------TENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAA 290
Query: 209 YAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTN 268
YD V V+ ++ +F P + +Q + K + GT + + + +
Sbjct: 291 LMYDAVHVVSVAVQQF--------------PQMTVSSLQCNRHKPWRFGTRFMSLIKEAH 336
Query: 269 FTGLSGQVQFNQDRNIVSR-GYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGK 322
+ GL+G++ FN+ + + DVI++ + + ++G W SG ++ E+ KGK
Sbjct: 337 WEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNM--TESQKGK 389
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 9 LKVPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYG 67
+P ++++AT LS F YF+R SD+QQ AM D++ Y W V A++ + +YG
Sbjct: 152 FNIPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYG 211
Query: 68 RNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVV 117
+G+ A +M K +++ + + LL P+ VV
Sbjct: 212 ESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHLPKARVV 261
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 248 LEQLKVFDGGTFLLRKLLQTNFTGLSGQ-VQFNQDRNIVSRGYDVINIDKM-----EIHR 301
+ +K DG LL L++TNFTG+SG + F+++ + R Y+++N +M +
Sbjct: 413 CDAMKPIDGRK-LLESLMKTNFTGVSGDTILFDENGDSPGR-YEIMNFKEMGKDYFDYIN 470
Query: 302 VGYWFDG 308
VG W +G
Sbjct: 471 VGSWDNG 477
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 126/334 (37%), Gaps = 88/334 (26%)
Query: 31 FIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLE----------- 79
F+R+ S Q + + W VI I DD GR L +LE
Sbjct: 116 FLRTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNY 175
Query: 80 KNMAKVSY------KLPLPVQFN--QHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTA 131
+N+ ++SY K +QF ++T LL +K L RV ++ S D ++ +A
Sbjct: 176 ENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235
Query: 132 QKLQMMTNNYVWLATDWLSATLESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWS 191
L YVWL + +++ ++LR + PD I L +
Sbjct: 236 AXLDXTGAGYVWLVGE---------REISGSALR----------YAPDGI---IGLQLIN 273
Query: 192 GMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQL 251
G + +S D V VA++I + NIT R +
Sbjct: 274 GKNESAHIS-----------DAVAVVAQAIHELFEXENIT----------DPPRGCVGNT 312
Query: 252 KVFDGGTFLLRKLLQTNF-TGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSG 310
++ G R L + + G++G+++FN+D + Y + N+ ++ +VG F+GS
Sbjct: 313 NIWKTGPLFKRVLXSSKYPDGVTGRIEFNEDGDRKFAQYSIXNLQNRKLVQVGI-FNGS- 370
Query: 311 FSVLPPETLKGKNVSHSQLDWKLQN---ITWPGG 341
+ +QN I WPGG
Sbjct: 371 --------------------YIIQNDRKIIWPGG 384
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG +N ++G+V+ + + D
Sbjct: 26 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKAD 83
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 84 LAVAPLAITYVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 186 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 245
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 246 MKEKWWRGNGCPE 258
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITCVREKVIDFSKPFMTLGISIL 114
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AI +L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAICQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCP 704
+ EKW+ GCP
Sbjct: 247 MKEKWWRGNGCP 258
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 4 EVANGLK---VPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
+VAN L+ +P +S+A+T LS ++ YF R+ D Q AMA+++ F+ W V
Sbjct: 131 QVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVST 190
Query: 60 IYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQ----HDITVLLNNSKPLGPRVY 115
+ + DYG GI A E + +S V + +D + KP RV
Sbjct: 191 VASEGDYGETGIEAFEQ--EARLRNISIATAEKVGRSNIRKSYDSVIRELLQKP-NARVV 247
Query: 116 VVHVSPDPGLRIFTTAQKLQMMTNNYVWLATD 147
V+ + D + A + ++ W+A+D
Sbjct: 248 VLFMRSDDSRELIAAASRANA---SFTWVASD 276
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 4 EVANGLK---VPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
+VAN L+ +P +S+A+T LS ++ YF R+ D Q AMA+++ F+ W V
Sbjct: 132 QVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVST 191
Query: 60 IYVDDDYGRNGISALSN--MLEKNMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVV 117
+ + DYG GI A L + K+ +D + KP RV V+
Sbjct: 192 VASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKP-NARVVVL 250
Query: 118 HVSPDPGLRIFTTAQKLQMMTNNYVWLATD 147
+ D + A ++ ++ W+A+D
Sbjct: 251 FMRSDDSRELIAAANRVNA---SFTWVASD 277
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRKKITIAILQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPEER 707
+ EKW+ GCPE R
Sbjct: 247 MKEKWWRGNGCPEPR 261
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPEER 707
+ EKW+ GCPE R
Sbjct: 247 MKEKWWRGNGCPEPR 261
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AILKL E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G + SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPKGSPYRDKITIAILQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPEER 707
+ EKW+ GCPE R
Sbjct: 247 MKEKWWRGNGCPEPR 261
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREKVIDFSKPFMTLGISIL 114
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 36 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 93
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R K++DFS+P+++ G+ I+
Sbjct: 94 LAVAPLAITYVREKVIDFSKPFMTLGISIL 123
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 221 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHM 280
Query: 693 LHEKWFCKEGCPEERRQHS 711
+ EKW+ GCPEE + +
Sbjct: 281 MKEKWWRGNGCPEEESKEA 299
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E ++ + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTILGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R +++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREEVIDFSKPFMTLGISIL 114
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AILKL E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 617 DYERALR--QGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLA 674
+YE A Q R+ + A + + ++ S + D G+ F RSG+G ++DSP
Sbjct: 202 NYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWK 261
Query: 675 VGMSTAILKLSENGMLQKLHEKWFCKEGC 703
+S +ILK ENG ++ L + W + C
Sbjct: 262 QNVSLSILKSHENGFMEDLDKTWVRYQEC 290
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 383 GYCIDILLEALKLVPYDVPYKFELFGDGL----------SNPSYDGLVKMVANDVFDAAV 432
G+CID+L++ + + + Y+ L DG + ++G++ + + D V
Sbjct: 65 GFCIDLLIKLARTMNF--TYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 433 GDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ I R + ++FS+P+ GL I+
Sbjct: 123 APLTINNERAQYIEFSKPFKYQGLTIL 149
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 617 DYERALR--QGPRNGGVAAIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLA 674
+YE A Q R+ + A + + ++ S + D G+ F RSG+G ++DSP
Sbjct: 202 NYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWK 261
Query: 675 VGMSTAILKLSENGMLQKLHEKWFCKEGC 703
+S +ILK ENG ++ L + W + C
Sbjct: 262 QNVSLSILKSHENGFMEDLDKTWVRYQEC 290
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 383 GYCIDILLEALKLVPYDVPYKFELFGDGL----------SNPSYDGLVKMVANDVFDAAV 432
G+CID+L++ + + + Y+ L DG + ++G++ + + D V
Sbjct: 65 GFCIDLLIKLARTMNF--TYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 433 GDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ I T R + ++FS+P+ GL I+
Sbjct: 123 APLTINTERAQYIEFSKPFKYQGLTIL 149
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 347 RGWVIADNARPL-----RIGVPRRASFVGFVTEEHDSHK-----VQGYCIDILLEALKLV 396
R +VI + A P+ R VP R+ + D+ + +G+CIDIL +
Sbjct: 15 RPFVIVEPADPISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTI 74
Query: 397 PYDVPYKFELFGDGLSNPSYDGLVKMVANDVF----DAAVGDIAIVTNRTKIVDFSQPYI 452
+ Y L +G DG+ + +VF D A+G + I R++IVDFS P++
Sbjct: 75 GFS--YDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFV 132
Query: 453 STGLVIV 459
TG+ ++
Sbjct: 133 ETGISVM 139
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---LSNPS---YDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K V + YK + GDG +P ++G+V + D A
Sbjct: 26 NERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
V + I R +++DFS+P++S G+ I+
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---LSNPS---YDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K V + YK + GDG +P ++G+V + D A
Sbjct: 26 NERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
V + I R +++DFS+P++S G+ I+
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKG 256
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---LSNPS---YDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K V + YK + GDG +P ++G+V + D A
Sbjct: 26 NERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
V + I R +++DFS+P++S G+ I+
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKG 256
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---LSNPS---YDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K V + YK + GDG +P ++G+V + D A
Sbjct: 26 NERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
V + I R +++DFS+P++S G+ I+
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG---LSNPS---YDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K V + YK + GDG +P ++G+V + D A
Sbjct: 45 NERYEGYCVDLAYEIAKHV--RIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 102
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
V + I R +++DFS+P++S G+ I+
Sbjct: 103 VAPLTITLVREEVIDFSKPFMSLGISIM 130
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 227 VGGNLDSKGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWWYDKG 275
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 138/362 (38%), Gaps = 83/362 (22%)
Query: 1 MISEVANGLKVPLVSFAATDPTLSA-LQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
M++ + ++P +S+A+T P LS ++ +F R DS Q AM D++ GW V
Sbjct: 132 MVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVST 191
Query: 60 IYVDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQFNQHDITV--------LLN--NSKP 109
+ + YG G+ + + + K +S + + + D T+ LL+ NS+
Sbjct: 192 LASEGSYGEKGVESFT-QISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRA 250
Query: 110 LGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATD---------------------- 147
VV + D ++ A K +++W+ +D
Sbjct: 251 ------VVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITI 304
Query: 148 -------------WLSATLES------FSKMNQTSLRILQGVVGLRQHTPD-SIPKKAFL 187
+ S TLE+ F++ + + + G ++ D + +
Sbjct: 305 QPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERI 364
Query: 188 SRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQ 247
+ S +Q+G V + D V+A+A + ++ N A D + +
Sbjct: 365 GKDSNYEQEGKVQ--------FVIDAVYAMAHA----LHHMNKDLCA-----DYRGVCPE 407
Query: 248 LEQLKVFDGGTFLLRKLLQTNFTGLSGQ-VQFNQDRNIVSRGYDVINIDKMEIHRVGYWF 306
+EQ GG LL+ + NF G +G V FN++ + R YD+ GY
Sbjct: 408 MEQA----GGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGR-YDIFQYQTTNTSNPGYRL 462
Query: 307 DG 308
G
Sbjct: 463 IG 464
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 133/355 (37%), Gaps = 69/355 (19%)
Query: 1 MISEVANGLKVPLVSFAATDPTLSA-LQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIA 59
M++ + ++P +S+A+T P LS ++ +F R DS Q AM D++ GW V
Sbjct: 132 MVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVST 191
Query: 60 IYVDDDYGRNGISALSNMLEKNMAKV---SYKLPLPVQFNQHDITVLLNNSKPLGPRVYV 116
+ + YG G+ + + + ++ S ++P + D ++ V
Sbjct: 192 LASEGSYGEKGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251
Query: 117 VHVSPDPGLRIFTTAQKLQMMTNNYVWLATD----------------------------- 147
V + D ++ A K +++W+ +D
Sbjct: 252 VIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATV 311
Query: 148 ------WLSATLES------FSKMNQTSLRILQGVVGLRQHTPD-SIPKKAFLSRWSGMQ 194
+ S TLE+ F++ + + + G ++ D + + + S +
Sbjct: 312 EGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYE 371
Query: 195 QKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVF 254
Q+G V + D V+A+A + ++ N A D + ++EQ
Sbjct: 372 QEGKVQ--------FVIDAVYAMAHA----LHHMNKDLCA-----DYRGVCPEMEQA--- 411
Query: 255 DGGTFLLRKLLQTNFTGLSGQ-VQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDG 308
GG LL+ + NF G +G V FN++ + R YD+ GY G
Sbjct: 412 -GGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGR-YDIFQYQTTNTTNPGYRLIG 464
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 11 VPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRN 69
+P ++++AT LS + YF+R SD+ Q AM D++ Y W V A++ + +YG +
Sbjct: 153 IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGES 212
Query: 70 GISALSNMLEKNMAKVSY 87
G+ A + + +++
Sbjct: 213 GMDAFKELAAQEGLSIAH 230
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 257 GTFLLRKLLQTNFTGLSG-QVQFNQDRNIVSRGYDVINIDKMEIHR-----VGYWFDG 308
G+ LL L++++F G+SG +V F++ + R YD++N+ E +R VG W +G
Sbjct: 420 GSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGR-YDIMNLQYTEANRYDYVHVGTWHEG 476
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 11 VPLVSFAATDPTLS-ALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRN 69
+P ++++AT LS + YF+R SD+ Q AM D++ Y W V A++ + +YG +
Sbjct: 148 IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGES 207
Query: 70 GISALSNM 77
G+ A +
Sbjct: 208 GMDAFKEL 215
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 249 EQLKVFDGGTFLLRKLLQTNFTGLSG-QVQFNQDRNIVSRGYDVINIDKMEIHR-----V 302
+ +K DG LL L++++F G+SG +V F++ + R YD++N+ E +R V
Sbjct: 408 DAMKPIDGRK-LLDFLIKSSFVGVSGEEVWFDEKGDAPGR-YDIMNLQYTEANRYDYVHV 465
Query: 303 GYWFDG 308
G W +G
Sbjct: 466 GTWHEG 471
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL-----SNPSYDGLVKMVANDVFDA 430
+ + + +GYCID+L E ++ + Y+ L DG ++G+VK + + D
Sbjct: 27 YGNDRFEGYCIDLLKELAHILGF--SYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADL 84
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K +DFS+P+++ G+ I+
Sbjct: 85 AVAPLTITHVREKAIDFSKPFMTLGVSIL 113
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E L
Sbjct: 185 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 244
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 245 MKEKWWRGSGCPE 257
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E + + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R +++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREEVIDFSKPFMTLGISIL 114
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AILKL E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E + + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R +++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREEVIDFSKPFMTLGISIL 114
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AILKL E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFD 429
+ + + +GYCID+L E + + Y+ L DG N ++G+V+ + + D
Sbjct: 27 YGNDRFEGYCIDLLRELSTHLGF--TYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 84
Query: 430 AAVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV +AI R +++DFS+P+++ G+ I+
Sbjct: 85 LAVAPLAITYVREEVIDFSKPFMTLGISIL 114
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A + E ++ + IG G+G SP ++ AILKL E G L
Sbjct: 187 AFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEEGKLHM 246
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 247 MKEKWWRGNGCPE 259
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL-----SNPSYDGLVKMVANDVFDA 430
+ + + +GYCID+L E ++ + Y+ L DG ++G+VK + + D
Sbjct: 29 YGNDRFEGYCIDLLKELAHILGF--SYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADL 86
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K +DFS+P+++ G+ I+
Sbjct: 87 AVAPLTITHVREKAIDFSKPFMTLGVSIL 115
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E L
Sbjct: 187 ALLMESTTIEYITQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHI 246
Query: 693 LHEKWFCKEGCP 704
+ EKW+ GCP
Sbjct: 247 MKEKWWRGSGCP 258
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYD-----GLVKMVANDVFDA 430
+ + + +GYC+D+L E ++ + Y +L DG D G+VK + + D
Sbjct: 27 YGNDRFEGYCLDLLKELSNILGF--LYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL 84
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K++DFS+P+++ G+ I+
Sbjct: 85 AVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 693 LHEKWFCKEGCP 704
+ EKW+ GCP
Sbjct: 246 MKEKWWRGNGCP 257
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYD-----GLVKMVANDVFDA 430
+ + + +GYC+D+L E ++ + Y +L DG D G+VK + + D
Sbjct: 27 YGNDRFEGYCLDLLKELSNILGF--LYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL 84
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K++DFS+P+++ G+ I+
Sbjct: 85 AVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 246 MKEKWWRGNGCPE 258
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYD-----GLVKMVANDVFDA 430
+ + + +GYC+D+L E ++ + Y +L DG D G+VK + + D
Sbjct: 26 YGNDRFEGYCLDLLKELSNILGF--IYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL 83
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K++DFS+P+++ G+ I+
Sbjct: 84 AVAPLTITYVREKVIDFSKPFMTLGISIL 112
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 185 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 244
Query: 693 LHEKWFCKEGCP 704
+ EKW+ GCP
Sbjct: 245 MKEKWWRGNGCP 256
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL-----SNPSYDGLVKMVANDVFDA 430
+ + + +GYC+D+L E ++ + Y +L DG ++G+VK + + D
Sbjct: 27 YGNDRFEGYCLDLLKELSNILGF--LYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL 84
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K++DFS+P+++ G+ I+
Sbjct: 85 AVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 693 LHEKWFCKEGCPE 705
+ EKW+ GCPE
Sbjct: 246 MKEKWWRGNGCPE 258
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 376 HDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYD-----GLVKMVANDVFDA 430
+ + + +GYC+D+L E ++ + Y +L DG D G+VK + + D
Sbjct: 27 YGNDRFEGYCLDLLKELSNILGF--LYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL 84
Query: 431 AVGDIAIVTNRTKIVDFSQPYISTGLVIV 459
AV + I R K++DFS+P+++ G+ I+
Sbjct: 85 AVAPLTITYVREKVIDFSKPFMTLGISIL 113
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 633 AIVDELPYVQLFLSNQTDFGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQK 692
A++ E ++ + IG G+G SP ++ AIL+L E G L
Sbjct: 186 ALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHM 245
Query: 693 LHEKWFCKEGCP 704
+ EKW+ GCP
Sbjct: 246 MKEKWWRGNGCP 257
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 45 NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 102
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 103 IAPLTITLVREEVIDFSKPFMSLGISIM 130
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 227 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 275
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 42 NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 99
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 100 IAPLTITLVREEVIDFSKPFMSLGISIM 127
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWF-----CKEGCPEERR 708
+G G+G A + S L ++ A+LKL+E G+L KL KW+ C G + +
Sbjct: 224 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKE 283
Query: 709 QHS 711
+ S
Sbjct: 284 KTS 286
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 30 NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 87
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 88 IAPLTITLVREEVIDFSKPFMSLGISIM 115
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 212 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 260
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 58 NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 115
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 116 IAPLTITLVREEVIDFSKPFMSLGISIM 143
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 240 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKG 288
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 552 ITSSYTASLSSILTVQQLSTSVKGIESLITNDWP---IGYQVGSFAYSYLSDSLRIQKSR 608
+ S + S +S+ + + T + G++ L P IG ++G+ Y R
Sbjct: 96 VAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYL--------R 147
Query: 609 LISLGSPEDYERALRQGPRNGGVAAIVDELPYVQL----FLSNQT--DFGIIGQPFTRSG 662
IS GS Y RQ + +A I+D + ++ + +++N + ++G+ F +S
Sbjct: 148 EISGGSRNFYPLKSRQEMYDSLLAGIID-VSFMDIGTAEYVTNNIYCNLTLVGEDFDKST 206
Query: 663 WGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEGCP 704
+G ++ A + IL L E G+L L +KWF + CP
Sbjct: 207 FGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTKACP 248
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 358 LRIGVPRRASFVGFV----TEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGD---G 410
LRIGV F T ++ K+ GY +D L+E L+ K D
Sbjct: 10 LRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLD-LIEYLR-------DKMGFVADVQLA 61
Query: 411 LSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFS 448
N SY GLV +AN +D A+GDI + + R +IV FS
Sbjct: 62 PPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFS 99
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 41 NERYEGYCVDLAAEIAKHCGF--KYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 98
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 99 IAPLTITLVREEVIDFSKPFMSLGISIM 126
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 227 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 275
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 125/336 (37%), Gaps = 48/336 (14%)
Query: 2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIY 61
+ + N L+VP + L + +++ + A+ DL+ W+ +Y
Sbjct: 90 VQSICNALEVPHIQLRWKHHPLDN-KDTFYVNLYPDYASLSHAILDLVQSLKWRSATVVY 148
Query: 62 VDDDYGRNGISALSNMLEKNMAKVSYKLPLPVQ---FNQHDITVLLNNSKPLGPRVYVVH 118
DD G L + E MA Y + L ++ + D LL K +
Sbjct: 149 -DDSTG------LIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFD 201
Query: 119 VSPDPGLRIFTTAQKLQMMTNNYVWLAT--DWLSATLE--SFSKMNQTSLRILQGVVGLR 174
S +I A + MMT Y ++ T D + LE +S +N T RIL
Sbjct: 202 CSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLTGFRIL------- 254
Query: 175 QHTPDSIPKKAFLSRWSGMQ-------QKGLVSAGLNTYGLYAYDTVWAVARSIDKFINE 227
D+ A + +WS + + GL+ + T YD V
Sbjct: 255 --NVDNPHVSAIVEKWSMERLQAAPRAESGLLDGVMMTDAALLYDAV------------- 299
Query: 228 HNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSR 287
+I P +Q + K + G + + + + GL+G++ FN+ + +
Sbjct: 300 -HIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTD 358
Query: 288 -GYDVINIDKMEIHRVGYWFDGSGFSVLPPETLKGK 322
D+I++ + + +VG W G ++ E KG+
Sbjct: 359 FDLDIISLKEDGLEKVGVWSPADGLNI--TEVAKGR 392
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 84 IAPLTITLCREEVIDFSKPFMSLGISIM 111
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKG 259
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKG 259
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKG 256
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKG 259
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKWWYDKG 259
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGCRDADTKIWNGMVGELVYGKADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 84
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 209 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 257
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 28 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 85
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 86 IAPLTITLVREEVIDFSKPFMSLGISIM 113
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 210 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 258
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 83
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIM 111
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 208 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 256
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 84
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 209 VGGNLDCKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 257
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 84
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIM 112
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 209 VGCNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 257
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKWGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 28 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 85
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 86 IAPLTITLVREEVIDFSKPFMSLGISIM 113
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 210 VGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKG 258
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKG 259
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWWYDKG 259
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITYVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 378 SHKVQGYCIDILLEALKLVPYDVPYKFELFGDGL------SNPSYDGLVKMVANDVFDAA 431
+ + +GYC+D+ E K + YK + GDG ++G+V + D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDEDTKIWNGMVGELVYGKADIA 86
Query: 432 VGDIAIVTNRTKIVDFSQPYISTGLVIV 459
+ + I R +++DFS+P++S G+ I+
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIM 114
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKL+E G+L KL KW+ +G
Sbjct: 211 VGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKG 259
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 383 GYCIDILLEALKLVPYDVPYKFELF--GDGL----SNPSYDGLVKMVANDVFDAAVGDIA 436
GYCID+L + + D+ + F+L+ GDG N + GLV + + + AV +
Sbjct: 70 GYCIDLLEQLAE----DMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFS 125
Query: 437 IVTNRTKIVDFSQPYISTGLVIV 459
I T R++++DF+ P+ ST L I+
Sbjct: 126 INTARSQVIDFTSPFFSTSLGIL 148
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWF 698
+G+PF G+G +SPL +S I + +G + LH+KW+
Sbjct: 243 VGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWY 287
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 383 GYCIDILLEALKLVPYDVPYKFELF--GDG----LSNPSYDGLVKMVANDVFDAAVGDIA 436
GYCID LLE L D+ + FEL+ GDG L + + GLV + AV +
Sbjct: 68 GYCID-LLERLA---EDLAFDFELYIVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFS 123
Query: 437 IVTNRTKIVDFSQPYISTGLVIV 459
I + R+++VDF+ P+ ST L I+
Sbjct: 124 INSARSQVVDFTSPFFSTSLGIM 146
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 630 GVAAIVDELPYVQLFLSNQT--DFGI----------IGQPFTRSGWGFAFQRDSPLAVGM 677
GVA + + P + F+ +++ D+ + +G+PF G+G ++SPL +
Sbjct: 205 GVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTSNL 264
Query: 678 STAILKLSENGMLQKLHEKWF 698
S I + +G + LH+KW+
Sbjct: 265 SEFISRYKSSGFIDLLHDKWY 285
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 349 WVIADNARPL-----RIGVPRRASFVGFVTEEHDSHKVQ----GYCIDILLEALKLVPYD 399
+VI ++ PL R VP R FV ++ V+ G+CIDIL + + V +
Sbjct: 17 FVIVEDIDPLTETCVRNTVPCR-KFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKF- 74
Query: 400 VPYKFELFGDGLS----NPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTG 455
Y L +G N ++G++ V AVG + I R+++VDFS P++ TG
Sbjct: 75 -TYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETG 133
Query: 456 LVIVA 460
+ ++
Sbjct: 134 ISVMV 138
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 556 YTASLSSILTVQQLSTSVKGIESLITNDWPIGYQVGSFAYSYLSDSLRIQKSRLISLGSP 615
Y + L+++ VQ +T++K I+ L N I + G+ ++ L+ ++ R +
Sbjct: 107 YDSGLAAM--VQANNTTIKSIDDL--NGKVIAAKTGTATIDWIKAHLKPKEIR--QFPNI 160
Query: 616 EDYERALRQGPRNGGVAAIVDELPYVQLFLSNQTD--FGIIGQPFTRSGWGFAFQRDSPL 673
+ AL G V A + + P V F++N+ + G P + +G F + SPL
Sbjct: 161 DQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPL 216
Query: 674 AVGMSTAILKLSENGMLQKLHEKWFCKE 701
++ + ++ +G K+++KWF E
Sbjct: 217 VAKVNAELARMKADGRYAKIYKKWFGSE 244
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 355 ARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNP 414
A+ L +G SF+ F ++ D K G+ +D+ E K + YK +
Sbjct: 23 AKELVVGT--DTSFMPFEFKQGD--KYVGFDLDLWAEIAKGAGWT--YKIQPM------- 69
Query: 415 SYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINN 464
+ GL+ + D A+ + I R K +DFS PY +GL + NN
Sbjct: 70 DFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANN 119
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 380 KVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAAVG 433
K +GYC+D+ E K + + YK + DG ++G+V + + A+
Sbjct: 29 KYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIA 86
Query: 434 DIAIVTNRTKIVDFSQPYISTGLVIV 459
+ I R +++DFS+P++S G+ I+
Sbjct: 87 PLTITLVREEVIDFSKPFMSLGISIM 112
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 209 VGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 257
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 380 KVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAAVG 433
K +GYC+D+ E K + + YK + DG ++G+V + + A+
Sbjct: 27 KYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIA 84
Query: 434 DIAIVTNRTKIVDFSQPYISTGLVIV 459
+ I R +++DFS+P++S G+ I+
Sbjct: 85 PLTITLVREEVIDFSKPFMSLGISIM 110
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 207 VGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 255
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 380 KVQGYCIDILLEALKLVPYDVPYKFELFGDG------LSNPSYDGLVKMVANDVFDAAVG 433
K +GYC+D+ E K + + YK + DG ++G+V + + A+
Sbjct: 27 KYEGYCVDLASEIAKHI--GIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIA 84
Query: 434 DIAIVTNRTKIVDFSQPYISTGLVIV 459
+ I R +++DFS+P++S G+ I+
Sbjct: 85 PLTITLVREEVIDFSKPFMSLGISIM 110
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 654 IGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
+G G+G A + S L ++ A+LKLSE G+L KL KW+ +G
Sbjct: 207 VGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKG 255
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 633 AIVDELPYVQLFLSNQTD--FGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGML 690
A+V + P + + +N+ I+G +G +SP ++ A+L L ENG
Sbjct: 154 AVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTY 213
Query: 691 QKLHEKWF 698
Q L++KWF
Sbjct: 214 QSLYDKWF 221
>pdb|4DZ1|A Chain A, Crystal Structure Of Dals, An Atp Binding Cassette
Transporter For D- Alanine From Salmonella Enterica
Length = 259
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 415 SYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKAS 468
++DG + VA+ D A I+I R K++DFS+PY +V+ NHK +
Sbjct: 76 AWDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVS-XANHKIT 128
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 257 GTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPP 316
G + R L Q F GL+G VQFN+ + VI + I ++GYW + F
Sbjct: 320 GIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVPAAL 379
Query: 317 ETL 319
E L
Sbjct: 380 EVL 382
>pdb|4F3S|A Chain A, Crystal Structure Of Periplasmic D-Alanine Abc Transporter
From Salmonella Enterica
Length = 255
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 415 SYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHK 466
++DG + VA+ D A I+I R K++DFS+PY +V+ NHK
Sbjct: 56 AWDGXLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSXA-NHK 106
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 562 SILTVQQLSTSVKGIESLITN-DWPIGYQVGSFAYSYLS---------DSLRIQKSRLI- 610
S+ + + TS++ ++ L D P G + S Y ++ DS+ Q R+I
Sbjct: 106 SVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMIN 165
Query: 611 -SLGSPEDY--ERALRQGPRNGGVAAIVDE--LPYVQLFLSNQTD--FGIIGQPFTRSGW 663
S GS + +A Q + G A + D L YV + N D F +G G+
Sbjct: 166 RSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAI---NDPDCSFYTVGNTVADRGY 222
Query: 664 GFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
G A Q SP S IL+L ++G + L KW+ K G
Sbjct: 223 GIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNG 261
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
DS+ K F+ RWS +++K G +A + YD V + + + + + I S
Sbjct: 251 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 308
Query: 236 HELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINID 295
D A + G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 309 GNAGDCLANPAV-----PWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 363
Query: 296 KMEIHRVGYW 305
++GYW
Sbjct: 364 TNGPRKIGYW 373
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
DS+ K F+ RWS +++K G +A + YD V + + + + + I S
Sbjct: 246 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 303
Query: 236 HELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINI 294
D A V Q G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 304 GNAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMEL 357
Query: 295 DKMEIHRVGYW 305
++GYW
Sbjct: 358 KTNGPRKIGYW 368
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
DS+ K F+ RWS +++K G +A + YD V + + + + + I S
Sbjct: 243 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 300
Query: 236 HELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINI 294
D A V Q G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 301 GNAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMEL 354
Query: 295 DKMEIHRVGYW 305
++GYW
Sbjct: 355 KTNGPRKIGYW 365
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 179 DSIPKKAFLSRWSGMQQK---GLVSAGLNTYGLYAYDTVWAVARSIDKFINEHNITFSAS 235
DS+ K F+ RWS +++K G +A + YD V + + + + + I S
Sbjct: 241 DSLVSK-FIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF-RNLRKQRIEISRR 298
Query: 236 HELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINI 294
D A V Q G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 299 GNAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMEL 352
Query: 295 DKMEIHRVGYW 305
++GYW
Sbjct: 353 KTNGPRKIGYW 363
>pdb|2IEE|A Chain A, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574.
pdb|2IEE|B Chain B, Crystal Structure Of Yckb_bacsu From Bacillus Subtilis.
Northeast Structural Genomics Consortium Target Sr574
Length = 271
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 371 FVTEEHD----SHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVAND 426
+ T HD S K+ GY ++++ EA K + V +K DG + V +
Sbjct: 32 YPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLKVEFK---------EXGIDGXLTAVNSG 82
Query: 427 VFDAAVGDIAIVTNRTKIVDFSQPY-ISTGLVIV 459
DAA DI + +R + FS PY S G IV
Sbjct: 83 QVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIV 116
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 416 YDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASA 469
+ G++ + D A+ I I R K +DFS Y +GL+++ NN+ +
Sbjct: 50 FSGIIPALQTKNVDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNNDVKS 103
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 633 AIVDELPYVQLFL--SNQTDFGIIGQPFTRSGWGFAFQRDS-PLAVGMSTAILKLSENGM 689
A++ + P + F+ + F +G +G AF + S L ++ A+ L ENG
Sbjct: 153 AVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGT 212
Query: 690 LQKLHEKWFCKE 701
++++KWF E
Sbjct: 213 YNEIYKKWFGTE 224
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 411 LSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPIN 463
+SN +D L+ + FDA G I T R K VDF+ PY + + +A N
Sbjct: 45 ISNQPWDSLIPSLKLGKFDALFGGXNITTARQKEVDFTDPYYTNSVSFIADKN 97
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 10/150 (6%)
Query: 179 DSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFIN--EHNITFSASH 236
DS+ K F+ RWS +++K A T + T AV + F N + I S
Sbjct: 243 DSLVSK-FIERWSTLEEKEYPGAHTTTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG 301
Query: 237 ELPDSKAT-RVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINID 295
D A V Q G + R L Q GLSG ++F+Q+ ++ +++ +
Sbjct: 302 NAGDCLANPAVPWGQ------GVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355
Query: 296 KMEIHRVGYWFDGSGFSVLPPETLKGKNVS 325
++GYW + V E G + S
Sbjct: 356 TNGPRKIGYWSEVDKMVVTLTELPSGNDTS 385
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 651 FGIIGQPFTRSGWGFAFQRDSPLAVGMSTAILKLSENGMLQKLHEKWFCKEG 702
F +G G+G A Q SP S IL+L ++G L KW+ K G
Sbjct: 210 FYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDXDILKHKWWPKNG 261
>pdb|2G7C|A Chain A, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
pdb|2G7C|B Chain B, Clostridium Difficile Toxin A Fragment Bound To
Agal(1,3)bgal(1,4) Bglcnac
Length = 255
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 278 FNQDRNIVSRGYDVIN-----IDKMEIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWK 332
FN + +I S GY +IN + I ++G + GF P N+ + ++
Sbjct: 38 FNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQ 97
Query: 333 LQ------NITWPGGKTETPRGWVIADNAR 356
+ NI + G ++ GWV D R
Sbjct: 98 NRFLYLHDNIYYFGNNSKAATGWVTIDGRR 127
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 354 NARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSN 413
+AR L G + FV ++ K+ G+ ID+ K + + + +N
Sbjct: 4 SARTLHFGTSATYAPYEFVDADN---KIVGFDIDVANAVCKEMQAECSF---------TN 51
Query: 414 PSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPY 451
S+D L+ + FDA + + + R + V FSQPY
Sbjct: 52 QSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPY 89
>pdb|4GPA|A Chain A, High Resolution Structure Of The Glua4 N-Terminal Domain
(Ntd)
Length = 389
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 257 GTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFD 307
G + R L Q GL+G VQF+ V+ DV + +VGYW D
Sbjct: 321 GIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWND 371
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 355 ARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNP 414
A ++ V A+F F E K+ G+ +D+L +K D +EL N
Sbjct: 39 ATKKKVVVGTDAAFAPF--EYMQKGKIVGFDVDLLDAVMKAAGLD----YEL-----KNI 87
Query: 415 SYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIV----APINN 464
+D L + + D + I I R + DFS PY VI+ +P+ N
Sbjct: 88 GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKN 141
>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|B Chain B, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|C Chain C, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
Length = 308
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 240 DSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFN-----QDRNIVSRGYD-VIN 293
+ K R +E+L + D + F L+ Q F + I+ G+D
Sbjct: 85 ERKLKREGVEELYLLD---------FSSQFASLTAQEFFATYIKAXNAKIIVAGFDYTFG 135
Query: 294 IDKMEIHRVGYWFDGSGFSVLPPETLKGK----NVSHSQLDWKLQNITWPGGKTETPRGW 349
DK + +FDG V P E KGK + + LD ++ G RG
Sbjct: 136 SDKKTAEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILDGNVKEAGKLLGAPLPSRGX 195
Query: 350 VIADNARPLRIGVP 363
V+ NAR IG P
Sbjct: 196 VVHGNARGRTIGYP 209
>pdb|3C2B|A Chain A, Crystal Structure Of Tetr Transcriptional Regulator From
Agrobacterium Tumefaciens
pdb|3C2B|B Chain B, Crystal Structure Of Tetr Transcriptional Regulator From
Agrobacterium Tumefaciens
Length = 221
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 404 FELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKI 444
FE GD +S P +++ A+D+ D GD+++ NR I
Sbjct: 77 FEKAGDRVSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAI 117
>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 590
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 308 GSGFSVLPPETLKGKNVSHSQLDWKLQNITW-PGGKTETPRGWVIADNARPLRIGVPRRA 366
G S++ T GK V Q+ WKL + W G PR +AD R + + P+
Sbjct: 197 GKKRSLITXATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLAD--RNVLVDDPKDK 254
Query: 367 SFVGFVTEEHDSHKVQGYCIDILLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVAND 426
+F F H +E K+V Y F ++ S+ GL K D
Sbjct: 255 TFTPFGDARHK------------IEGGKVVKSREIY-FAIYQSIASDERRPGLYKEFPQD 301
Query: 427 VFDAAV------GDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKP 475
FD + G +N +I+++ +P G +++ + F P
Sbjct: 302 FFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGXTATPLREDNRDTYRYFGNP 356
>pdb|2VHA|A Chain A, Debp
pdb|2VHA|B Chain B, Debp
Length = 287
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 608 RLISLGSPEDYERALRQGPRNGGVAAIVDE--LPYVQLFLSNQTDFGIIGQPFTRSGWGF 665
R+IS D R L G VA ++D+ L + ++ I+G+P ++ +G
Sbjct: 157 RIISAKDHGDSFRTLESG---RAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGC 213
Query: 666 AFQRDSP-LAVGMSTAILKLSENGMLQKLHEKWF 698
++D P M I ++ +G +K +KWF
Sbjct: 214 MLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWF 247
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 415 SYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTG 455
S+DGL+ + + FD + I R V+F +PYI G
Sbjct: 52 SWDGLIPGLVTEKFDIIISGXTISQERNLRVNFVEPYIVVG 92
>pdb|3DZ1|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 1.87a Resolution
Length = 313
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 333 LQNITWPG-GKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCI-DILL 390
L++ WPG K T RG+ + RPL I F+ F E GYC D L+
Sbjct: 168 LKHEDWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEXERGADGAXTGYCFPDXLV 227
Query: 391 EALKL 395
+ +KL
Sbjct: 228 DVVKL 232
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 420 VKMVANDVFDAAVGDIAIVTNRTKI--VDFSQPYISTGLVIVAP 461
+ VA D +G I++ R I + F+QPY S+G+ ++ P
Sbjct: 58 ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 420 VKMVANDVFDAAVGDIAIVTNRTKI--VDFSQPYISTGLVIVAP 461
+ VA D +G I++ R I + F+QPY S+G+ ++ P
Sbjct: 58 ITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,868,707
Number of Sequences: 62578
Number of extensions: 932000
Number of successful extensions: 2064
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 203
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)