Query 003633
Match_columns 806
No_of_seqs 459 out of 3759
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 18:42:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003633.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1680-1684//hhsearch_pdb/003633hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 1.0 1 1 792.5 50.9 692 2-753 76-815 (823)
2 3qel_B Glutamate [NMDA] recept 1.0 1 1 327.9 15.1 272 1-340 81-363 (364)
3 4gpa_A Glutamate receptor 4; P 1.0 1 1 324.8 27.6 296 2-319 85-383 (389)
4 3o21_A Glutamate receptor 3; p 1.0 1 1 322.6 27.4 290 2-314 85-380 (389)
5 2e4u_A Metabotropic glutamate 1.0 1 1 320.9 31.0 306 2-351 133-486 (555)
6 3sm9_A Mglur3, metabotropic gl 1.0 1 1 320.8 26.3 300 2-342 132-478 (479)
7 3hsy_A Glutamate receptor 2; l 1.0 1 1 319.2 25.5 290 2-313 76-373 (376)
8 3ks9_A Mglur1, metabotropic gl 1.0 1 1 318.6 27.1 308 2-348 144-496 (496)
9 4f11_A Gamma-aminobutyric acid 1.0 1 1 315.5 24.1 306 2-348 101-427 (433)
10 3mq4_A Mglur7, metabotropic gl 1.0 1 1 314.7 18.0 286 2-306 133-467 (481)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=792.51 Aligned_cols=692 Identities=20% Similarity=0.316 Sum_probs=573.6
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 74003669872882436997866578995387107938899999999978198299999982976411599999999857
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKN 81 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~~ 81 (806)
++++++.++||+||+ ++|.+ .++||++|+.|+ |+.++++++++|||++|++|| ||++|.+.++.+.+++++.
T Consensus 76 ~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~ 147 (823)
T 3kg2_A 76 ITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEK 147 (823)
T ss_dssp HHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCEEEC--CCCCC--CCCCEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHHHHHHHCC
T ss_conf 999862278863512--36777--777618996787---899999999977997899999-6772378999999875436
Q ss_pred CCEEEEEECCCCC--CCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 8189997536999--99467999997308899809999649614899999999807855882899707310001334468
Q 003633 82 MAKVSYKLPLPVQ--FNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKM 159 (806)
Q Consensus 82 g~~i~~~~~~~~~--~~~~~~~~~l~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~ 159 (806)
|+||++.+.++.. .++.++..++.+|+++++|+|++++..+.+..++++|+++||+.++|+||++++.....+.
T Consensus 148 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~---- 223 (823)
T 3kg2_A 148 KWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL---- 223 (823)
T ss_dssp TCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC----
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH----
T ss_conf 9705999820378776615689999998735873999988778999999999972867898089995165455655----
Q ss_pred CHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 83355311622899971799903477999976201488---8777886203444557989999999987606-7542478
Q 003633 160 NQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKG---LVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSAS 235 (806)
Q Consensus 160 ~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~aYDav~~la~Al~~~~~~~-~~~~~~~ 235 (806)
....+...|+++++++.++++.+++|.++|++.++.. .....++.+++++||||+++|+|++++..++ +.....
T Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~- 301 (823)
T 3kg2_A 224 -LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG- 301 (823)
T ss_dssp -SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS-
T ss_pred -HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf -776257878347642348742799999999861432357777655441468999899999999999986166533689-
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 8899876564333345--44575589999977056677425399931997000218999922572699988628999300
Q 003633 236 HELPDSKATRVQLEQL--KVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSV 313 (806)
Q Consensus 236 ~~~~~~~~~~~~~~~~--~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~~~~~~~vG~w~~~~~l~~ 313 (806)
...+|... ..+.+|.+|+++|++++|+|++|+++||++|++..+.|+|+|+++++++.||+|++..|+..
T Consensus 302 --------~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~ 373 (823)
T 3kg2_A 302 --------NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVL 373 (823)
T ss_dssp --------CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEE
T ss_pred --------CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEE
T ss_conf --------998866788876664578999997356577666767899986654179999972788745787707988112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCEEEEEECCCCCCCEEEEE------CCCCEEEEEEHH
Q ss_conf 49654358887777533463103618998567871000389997599430667754218830------598406844099
Q 003633 314 LPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEE------HDSHKVQGYCID 387 (806)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~~~~~~~g~~lrv~v~~~~~~~~~~~~~------~~~~~~~G~~id 387 (806)
..+ .....+|++|+|++...+|| ++.. ++++++.|||+|
T Consensus 374 ~~~--------------------------------~~~~~~~~~l~v~~~~~~P~---~~~~~~~~~~~~~~~~~G~~~d 418 (823)
T 3kg2_A 374 TED--------------------------------DTSGLEQKTVVVTTILESPY---VMMKANHAALAGNERYEGYCVD 418 (823)
T ss_dssp CCC--------------------------------CCSSCCCCCEEEEECCCTTT---SEECTTGGGCCGGGGEESHHHH
T ss_pred CCC--------------------------------CCCCCCCCEEEEEEECCCCC---EEEECCCCCCCCCCCEEEEHHH
T ss_conf 147--------------------------------66565797899999147884---8995374456789866888799
Q ss_pred HHHHHHHHCCCCCCEEEEECC-CC---CCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECCCCCCCCEEEEEECC
Q ss_conf 999999849998354999769-99---99999777999998094028982188833843226733332233349999636
Q 003633 388 ILLEALKLVPYDVPYKFELFG-DG---LSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPIN 463 (806)
Q Consensus 388 l~~~i~~~l~~~~~~~~~~~~-~~---~~n~s~~~l~~~l~~g~~D~~~~~~~it~~r~~~vdft~p~~~~~~~~iv~~~ 463 (806)
+++++++++||++++..++.+ .| ..|++|++++++|.+|++|++++++++|.+|.+.+|||.||+.+++++++|++
T Consensus 419 l~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~ 498 (823)
T 3kg2_A 419 LAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKP 498 (823)
T ss_dssp HHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECC
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEECCHHHEEEEEECCCHHHCCEEEEEECC
T ss_conf 99999997398579998268865665788885355787645045767852323032010048963004657779999877
Q ss_pred C-CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--------------CCCHHHHHHHHHHHHHCC
Q ss_conf 8-8889415523762456999999999999886431024389998997--------------310035899999864304
Q 003633 464 N-HKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPP--------------RRQIATMFLFSFSTLFKT 528 (806)
Q Consensus 464 ~-~~~~~~~~l~PF~~~~W~~~~~~~~~~~~v~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~ 528 (806)
. ..++++.|++||++.+|++++++++++++++|+++|+.+.+|+.+. ...+.+++|+++++++.+
T Consensus 499 ~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 578 (823)
T 3kg2_A 499 QKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQ 578 (823)
T ss_dssp CCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC-
T ss_pred CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 76666500764678564899999999999999999985683530676544455556533344322777799999999743
Q ss_pred CCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHCC-CCEEEEECCHHHHHHHHHCCCCC
Q ss_conf 866-5456420266887776654211011120123420034447989946755199-96369847615788642012233
Q 003633 529 NQE-ATVSSLGRFVMVVWLFLLMVITSSYTASLSSILTVQQLSTSVKGIESLITND-WPIGYQVGSFAYSYLSDSLRIQK 606 (806)
Q Consensus 529 ~~~-~~~s~~~R~v~~~w~~~~lil~s~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~-~~ig~~~gs~~~~~l~~~~~~~~ 606 (806)
+.+ .|++.++|+++++|||++||++++|||+|+|+||++++.++|++++||.+++ ..+++..++....++.+......
T Consensus 579 g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 658 (823)
T 3kg2_A 579 GADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVF 658 (823)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHCCCHHH
T ss_conf 88868865224069999999999999999998887720346578988989980288715899868828999886112379
Q ss_pred C----------CCEECCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCC-CCEEEECCCCCCCCCEEEECCCCCCHH
Q ss_conf 3----------50107997689999964998997389992722378886179-986993874223873546448997627
Q 003633 607 S----------RLISLGSPEDYERALRQGPRNGGVAAIVDELPYVQLFLSNQ-TDFGIIGQPFTRSGWGFAFQRDSPLAV 675 (806)
Q Consensus 607 ~----------~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~spl~~ 675 (806)
. ....+.+.+++++.+.+. ++.+|++.+.+.++|+..++ |++.++++.+...++|+++||+|||++
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~ 735 (823)
T 3kg2_A 659 DKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGT 735 (823)
T ss_dssp HHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCC---CCCEEEEECHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCHHHH
T ss_conf 99999998569864347789999998625---885699903678999985489854881552345633676259985899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899998711011216899985427-89999867698-8865201454146899999999999999999999777320136
Q 003633 676 GMSTAILKLSENGMLQKLHEKWFC-KEGCPEERRQH-SEPHQLRLISFWGLYLLCGTITFTAFLVFLLRMVCQYVRYKQQ 753 (806)
Q Consensus 676 ~i~~~il~l~e~G~~~~i~~kw~~-~~~c~~~~~~~-~~~~~L~l~~~~g~F~il~~g~~lal~vf~~E~~~~~~~~~~~ 753 (806)
.||.+|+++.|+|++++|.++|+. ...|....... ....+|++++++|+|+++++|+++|+++|++|++|+++++++.
T Consensus 736 ~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~ 815 (823)
T 3kg2_A 736 PVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKR 815 (823)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999986793999998657689988888766556677535256140899999899999999999999972206643
No 2
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=1.00 E-value=1 Score=327.95 Aligned_cols=272 Identities=15% Similarity=0.289 Sum_probs=221.1
Q ss_pred CHHCCCCCCCCCEEECCCCCC-CCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 974003669872882436997-86657-8995387107938899999999978198299999982976411599999999
Q 003633 1 MISEVANGLKVPLVSFAATDP-TLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNML 78 (806)
Q Consensus 1 ~va~i~~~~~vP~Is~~at~p-~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l 78 (806)
+++.+++.++||+|||++++| .|+++ +||||+||+|+|..|+.|+++++++|||++|++||+|+ .+++.|.+.+
T Consensus 81 ~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~~~~~~~l 156 (364)
T 3qel_B 81 ILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGYQDFVNKI 156 (364)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECC----CCHHHHHHHH
T ss_conf 999997503998899626987757876667607990798699999999999988982999999677----4599999999
Q ss_pred HHC--CC--EEEEEECCCCCCCHHHHHHHH-HHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 857--81--899975369999946799999-7308899809999649614899999999807855882899707310001
Q 003633 79 EKN--MA--KVSYKLPLPVQFNQHDITVLL-NNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATL 153 (806)
Q Consensus 79 ~~~--g~--~i~~~~~~~~~~~~~~~~~~l-~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~ 153 (806)
++. |. |+.+...++...+..++..++ .+++++++||||++++.+.+..++++|.++||++++|+||+++++....
T Consensus 157 ~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~ 236 (364)
T 3qel_B 157 RSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDT 236 (364)
T ss_dssp HHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCST
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf 99864354536889897367886407899999987057819999838899999999999759989985999835012676
Q ss_pred CCCCCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 334468833553116228999717999034779999762014888777886203444557989999999987606-7542
Q 003633 154 ESFSKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKGLVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITF 232 (806)
Q Consensus 154 ~~~~~~~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~aYDav~~la~Al~~~~~~~-~~~~ 232 (806)
+.. . .+.++|+++++++. |++ .+.+++||||+++|+|++++..++ ..+.
T Consensus 237 ~~~----~--~~~~~g~~~~~~~~------------W~~------------~~~~~~yDaV~~~A~A~~~~~~~~~~i~~ 286 (364)
T 3qel_B 237 DTV----P--SEFPTGLISVSYDE------------WDY------------GLPARVRDGIAIITTAASDMLSEHSFIPE 286 (364)
T ss_dssp TCC----C--TTSCTTCEECCBCT------------TTS------------CHHHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCC----C--CCCCCCEEEEEECC------------CHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 544----3--35777358875132------------015------------68899999999999999999851687899
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEE-CCCEEEEEEEECCC
Q ss_conf 4788899876564333345--44575589999977056677425399931997000218999922-57269998862899
Q 003633 233 SASHELPDSKATRVQLEQL--KVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINID-KMEIHRVGYWFDGS 309 (806)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~-~~~~~~vG~w~~~~ 309 (806)
...+|... .+|.+|..|+++|++++|+|+ +++||++|+|.++.|+|+|++ +.++++||+|+++
T Consensus 287 -----------~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~~- 352 (364)
T 3qel_B 287 -----------PKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKDK- 352 (364)
T ss_dssp -----------CCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECSS-
T ss_pred -----------CCCCCCCCCCCCCCCHHHHHHHHHHCEEECC--EEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCC-
T ss_conf -----------8888777888766778999999843327376--68887899724643899997588872799898798-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 9300496543588877775334631036189
Q 003633 310 GFSVLPPETLKGKNVSHSQLDWKLQNITWPG 340 (806)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg 340 (806)
+| ++..++||+
T Consensus 353 ~L--------------------~~~~~~Wp~ 363 (364)
T 3qel_B 353 SL--------------------QMKYYVWPR 363 (364)
T ss_dssp CE--------------------EESCSSCCC
T ss_pred EE--------------------EECCCCCCC
T ss_conf 57--------------------867577889
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=324.82 Aligned_cols=296 Identities=18% Similarity=0.249 Sum_probs=248.3
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 74003669872882436997866578995387107938899999999978198299999982976411599999999857
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKN 81 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~~ 81 (806)
++++++.++||+|+++++.+.. .+|++|+|+.+ +.|+++++++|+|++|++||.||+++ ...+.+.+.+.+.
T Consensus 85 v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~~~~~~~ 156 (389)
T 4gpa_A 85 LTSFCSALHISLITPSFPTEGE--SQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIMEKAGQN 156 (389)
T ss_dssp HHHHHHHTTCEEEECSCCCSSC--CSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEECCCCCCCC--CCCCCCCCCCH-----HHHHHHHHHHCCCCEEEEEEECCHHH-HHHHHHHHHHHHC
T ss_conf 9999998378711034454444--66774436778-----99999999973896799997032466-7889999888753
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCH
Q ss_conf 81899975369999946799999730889980999964961489999999980785588289970731000133446883
Q 003633 82 MAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQ 161 (806)
Q Consensus 82 g~~i~~~~~~~~~~~~~~~~~~l~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~~~ 161 (806)
|+||+....++ ....++..++.+++.+++|+|+++++...+..++++|+++||+..+|+||+++++...... .
T Consensus 157 g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~-----~ 229 (389)
T 4gpa_A 157 GWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL-----E 229 (389)
T ss_dssp TCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC-----H
T ss_pred CCEEEEEEECC--CCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH-----H
T ss_conf 96378875037--7604489999776505873799972325777999999983787886699993752122245-----5
Q ss_pred HHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 355311622899971799903477999976201488--8777886203444557989999999987606-7542478889
Q 003633 162 TSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKG--LVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSASHEL 238 (806)
Q Consensus 162 ~~~~~~~gvl~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~~~~aYDav~~la~Al~~~~~~~-~~~~~~~~~~ 238 (806)
.......++.+++...++++.+++|.++|++.+... .....++.+++++|||||++|+|++++.+++ .....
T Consensus 230 ~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~----- 304 (389)
T 4gpa_A 230 RFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRR----- 304 (389)
T ss_dssp HHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCT-----
T ss_pred HHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----
T ss_conf 554204644899752589767899999999986311246789824889999999999999999987424454446-----
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 98765643333454457558999997705667742539993199700021899992257269998862899930049654
Q 003633 239 PDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVLPPET 318 (806)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~~~~~~~vG~w~~~~~l~~~~~~~ 318 (806)
.....+.|....+|++|..|+++|++++|+|+||+|+||++|+|.+..|+|+|++++++++||+|++.+||.+..+++
T Consensus 305 --~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~~~~~t 382 (389)
T 4gpa_A 305 --GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQDRT 382 (389)
T ss_dssp --TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEECCC--
T ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCEEECCCCC
T ss_conf --776654667775454099999999739433475458999999898777899998899789999998898928778986
Q ss_pred C
Q ss_conf 3
Q 003633 319 L 319 (806)
Q Consensus 319 ~ 319 (806)
.
T Consensus 383 k 383 (389)
T 4gpa_A 383 K 383 (389)
T ss_dssp -
T ss_pred C
T ss_conf 3
No 4
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=1.00 E-value=1 Score=322.61 Aligned_cols=290 Identities=14% Similarity=0.266 Sum_probs=240.7
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 74003669872882436997866578995387107938899999999978198299999982976411599999999857
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKN 81 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~~ 81 (806)
++++++.++||+|++++ |.++.. +|.+|+.|+ |+.++++++++|||++|++|| |++||...++.+.+.+++.
T Consensus 85 ~~~i~~~~~iP~Is~s~--~~~~~~--~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~ 156 (389)
T 3o21_A 85 LTSFCGALHTSFVTPSF--PTDADV--QFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQN 156 (389)
T ss_dssp HHHHHHHHTCCEEECSC--CCSSCC--SSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCEEECCC--CCCCCC--CEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHHHHHHCC
T ss_conf 99985547896460477--876677--607997468---899999999967997799998-3807789999999976317
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCH
Q ss_conf 81899975369999946799999730889980999964961489999999980785588289970731000133446883
Q 003633 82 MAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKMNQ 161 (806)
Q Consensus 82 g~~i~~~~~~~~~~~~~~~~~~l~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~~~ 161 (806)
|+||++.+.++. ....++..+|.+|+++++|+|+++++...+..++++|+++||+.++|+||+++.+....+. .
T Consensus 157 g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~-----~ 230 (389)
T 3o21_A 157 NWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL-----E 230 (389)
T ss_dssp TCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-----H
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCH-----H
T ss_conf 976999971477-8707799999999728975999987889999999999972846687599981687140327-----8
Q ss_pred HHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf 355311622899971799903477999976201488---8777886203444557989999999987606-754247888
Q 003633 162 TSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKG---LVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSASHE 237 (806)
Q Consensus 162 ~~~~~~~gvl~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~aYDav~~la~Al~~~~~~~-~~~~~~~~~ 237 (806)
.......|+++++++.+++|.+++|.++|+++++.. .+...++.|++++||||+++|+|++++..++ ..++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~-- 308 (389)
T 3o21_A 231 RVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGS-- 308 (389)
T ss_dssp HHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC------
T ss_pred HHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 874678514899974699756999999997525323588887753306889999999999999999861722015888--
Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCEEEEEEEECCCCCCCC
Q ss_conf 99876564333--345445755899999770566774253999319970002189999225726999886289993004
Q 003633 238 LPDSKATRVQL--EQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSVL 314 (806)
Q Consensus 238 ~~~~~~~~~~~--~~~~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~~~~~~~vG~w~~~~~l~~~ 314 (806)
...| ....+|.+|.+|+++|++++|+|++|+++||++|++....|+|+|+.++++++||+|++..||+..
T Consensus 309 -------~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 309 -------AGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPF 380 (389)
T ss_dssp --------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEECC
T ss_pred -------CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf -------876789999887874899999971766666142354899973364689999748886154698689884406
No 5
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=320.89 Aligned_cols=306 Identities=21% Similarity=0.356 Sum_probs=244.8
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 7400366987288243699786657-899538710793889999999997819829999998297641159999999985
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK 80 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~ 80 (806)
|+++++.+++|+|||++++|.|+++ +||||||+.|+|..|+.++++++++|||+||++|+.||+||...++.|.+.+++
T Consensus 133 va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~ 212 (555)
T 2e4u_A 133 VANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARL 212 (555)
T ss_dssp HHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99997076875685775887668854488733517974889999999999869829999994283799999999999987
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 7818999753699999467999997308-899809999649614899999999807855882899707310001334468
Q 003633 81 NMAKVSYKLPLPVQFNQHDITVLLNNSK-PLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKM 159 (806)
Q Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~l~~i~-~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~ 159 (806)
.|+||++.+.++...+..++...+.+|+ ++++||||+++....+..+++++.++|+ +++||+++.|.......
T Consensus 213 ~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~--- 286 (555)
T 2e4u_A 213 RNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV--- 286 (555)
T ss_dssp TTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT---
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCHHH---
T ss_conf 896289999937887768999999997216888789999277999999999998668---82999805310331121---
Q ss_pred CHHHHHHCCCEEEEEEECCCCHHHHH---------------HHHHHHHHCCCCC-------------CC-----CCCCCC
Q ss_conf 83355311622899971799903477---------------9999762014888-------------77-----788620
Q 003633 160 NQTSLRILQGVVGLRQHTPDSIPKKA---------------FLSRWSGMQQKGL-------------VS-----AGLNTY 206 (806)
Q Consensus 160 ~~~~~~~~~gvl~~~~~~~~~~~~~~---------------f~~~~~~~~~~~~-------------~~-----~~~~~~ 206 (806)
....+.++|++++.++..+.+.+++ |.+.|+..|+... +. ..+..+
T Consensus 287 -~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~ 365 (555)
T 2e4u_A 287 -KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESK 365 (555)
T ss_dssp -TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTT
T ss_pred -CCCHHHCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -0212114548999744678976799996478455899879999999975999987776678999742303343433354
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHCCCCC------CCEEE-EE
Q ss_conf 3444557989999999987606-7542478889987656433334544575589999-97705667------74253-99
Q 003633 207 GLYAYDTVWAVARSIDKFINEH-NITFSASHELPDSKATRVQLEQLKVFDGGTFLLR-KLLQTNFT------GLSGQ-VQ 277 (806)
Q Consensus 207 ~~~aYDav~~la~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~-~l~~~~f~------g~tG~-i~ 277 (806)
+..+||||+++|+||+++..+. ... ...|...... ++++|++ +|++++|. |.+|+ +.
T Consensus 366 ~~~~YdAVya~A~AL~~~~~~~~~~~-------------~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~ 431 (555)
T 2e4u_A 366 IMFVVNAVYAMAHALHKMQRTLCPQT-------------TKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVK 431 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTC-------------SSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC-------------CCCCCCCCCC-CCCCCCHHHHHCEEECCCCCCCCCCCCEEE
T ss_conf 50168799999999999985016788-------------7666446789-824012775713251454456688998689
Q ss_pred EECCCCEECCCEEEEEEE--CC--CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf 931997000218999922--57--269998862899930049654358887777533463103618998567871000
Q 003633 278 FNQDRNIVSRGYDVINID--KM--EIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRGWVI 351 (806)
Q Consensus 278 fd~~G~~~~~~y~I~n~~--~~--~~~~vG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~~~~ 351 (806)
||++|++ ...|+|+|++ ++ .+++||.|++ .|. .+...|.|++ .++|++.|-
T Consensus 432 fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l~------------------i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 432 FDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TLS------------------LDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp CCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--SEE------------------CCGGGCCCTT--SSCCCCCSS
T ss_pred ECCCCCC-CCEEEEEEEEECCCCEEEEEEEEECC--EEE------------------EECCCCCCCC--CCCCCEEEC
T ss_conf 7589985-32178999995699689999988616--478------------------8031033577--887644317
No 6
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=1.00 E-value=1 Score=320.76 Aligned_cols=300 Identities=20% Similarity=0.357 Sum_probs=240.7
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 7400366987288243699786657-899538710793889999999997819829999998297641159999999985
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK 80 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~ 80 (806)
++++++.+++|+|||++++|.|+++ +||||||+.|+|..|+.++++++++|||+||++|+.||+||+..++.+.+++++
T Consensus 132 va~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~ 211 (479)
T 3sm9_A 132 VANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARL 211 (479)
T ss_dssp HHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99998638942887876884435766588747757867889999999999789819999996332058899999999997
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHH-HHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 781899975369999946799999-7308899809999649614899999999807855882899707310001334468
Q 003633 81 NMAKVSYKLPLPVQFNQHDITVLL-NNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKM 159 (806)
Q Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~l-~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~ 159 (806)
.|+||++.+.++......++..++ ..|++++++||++++....+..+++++.++|+. ++||+++.|.......
T Consensus 212 ~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~--- 285 (479)
T 3sm9_A 212 RNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII--- 285 (479)
T ss_dssp TTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH---
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCE---EEEEEECHHHCCCCCC---
T ss_conf 7952999997378887688999999997448974999986758999999999984977---9999956020676321---
Q ss_pred CHHHHHHCCCEEEEEEECCCCHHHHHHHHH---------------HHHHCCCC-------------CCCC-----CCCCC
Q ss_conf 833553116228999717999034779999---------------76201488-------------8777-----88620
Q 003633 160 NQTSLRILQGVVGLRQHTPDSIPKKAFLSR---------------WSGMQQKG-------------LVSA-----GLNTY 206 (806)
Q Consensus 160 ~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~---------------~~~~~~~~-------------~~~~-----~~~~~ 206 (806)
......++|++++.++..+.|.+++|... |+..|++. +++. .....
T Consensus 286 -~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~ 364 (479)
T 3sm9_A 286 -KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESK 364 (479)
T ss_dssp -TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTT
T ss_pred -CCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -3656547638999714677756566751268576889879999999976988898865466788740125575435440
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHCCCCCCC------EE-EEEE
Q ss_conf 3444557989999999987606754247888998765643333454457558999-99770566774------25-3999
Q 003633 207 GLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLL-RKLLQTNFTGL------SG-QVQF 278 (806)
Q Consensus 207 ~~~aYDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~-~~l~~~~f~g~------tG-~i~f 278 (806)
...+||||+++|+|||+++.+... .....|...... .+++|+ ++|++++|++. +| .+.|
T Consensus 365 ~~~vy~AVyavA~ALh~m~~~~~~------------~~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~f 431 (479)
T 3sm9_A 365 IMFVVNAVYAMAHALHKMQRTLCP------------NTTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKF 431 (479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST------------TCSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------------CCCCCCCCCCCC-CHHHHHHHHHCCEEECCCCCCCCCCCCEEEE
T ss_conf 106898999999999999870567------------988677777775-7677799985024403666764568986898
Q ss_pred ECCCCEECCCEEEEEEEC--C--CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 319970002189999225--7--269998862899930049654358887777533463103618998
Q 003633 279 NQDRNIVSRGYDVINIDK--M--EIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGK 342 (806)
Q Consensus 279 d~~G~~~~~~y~I~n~~~--~--~~~~vG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~ 342 (806)
|++|+ ....|+|+|++. + .+++||.|+ ..|. .+...|.|||+.
T Consensus 432 d~~G~-~~~~YdI~n~~~~~~~~~~~~VG~~~--~~l~------------------i~~~~I~W~~~~ 478 (479)
T 3sm9_A 432 DTFGD-GMGRYNVFNFQNVGGKYSYLKVGHWA--ETLS------------------LDVNSIHWSRNS 478 (479)
T ss_dssp CTTCB-CCCCEEEEEEEESSSCEEEEEEEEES--SSEE------------------ECGGGCCCC---
T ss_pred CCCCC-CCCCEEEEEEEECCCCEEEEEEEEEE--CEEE------------------EECCEEEECCCC
T ss_conf 78998-66406799989779958999999990--4488------------------854424768888
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=1.00 E-value=1 Score=319.18 Aligned_cols=290 Identities=17% Similarity=0.270 Sum_probs=239.6
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 74003669872882436997866578995387107938899999999978198299999982976411599999999857
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSALQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEKN 81 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~~ 81 (806)
++++++.++||+||++++ . ....+|++|+.|+ |+.++++++++|||++|++|| |++||...++.+.+.+++.
T Consensus 76 v~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~ 147 (376)
T 3hsy_A 76 ITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEK 147 (376)
T ss_dssp HHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEECCCC--C--CCCCCCEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHHHHHHHHC
T ss_conf 999843576853622788--7--6667716996865---789999999966987799998-0842589999999976416
Q ss_pred CCEEEEEECCCCC--CCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 8189997536999--99467999997308899809999649614899999999807855882899707310001334468
Q 003633 82 MAKVSYKLPLPVQ--FNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSKM 159 (806)
Q Consensus 82 g~~i~~~~~~~~~--~~~~~~~~~l~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~~ 159 (806)
|+||++...++.. .++.++..++.+|+++++|+|++++....+..++++|+++||+..+|+||++++.....+.
T Consensus 148 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~---- 223 (376)
T 3hsy_A 148 KWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL---- 223 (376)
T ss_dssp TCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG----
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCH----
T ss_conf 9848999713566664424699999998627986999988889999999999972667888089980798463346----
Q ss_pred CHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 83355311622899971799903477999976201488---8777886203444557989999999987606-7542478
Q 003633 160 NQTSLRILQGVVGLRQHTPDSIPKKAFLSRWSGMQQKG---LVSAGLNTYGLYAYDTVWAVARSIDKFINEH-NITFSAS 235 (806)
Q Consensus 160 ~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~aYDav~~la~Al~~~~~~~-~~~~~~~ 235 (806)
........+++++.+..+++|..++|.++|+++++.. .+...++.|++++||||+++|+|++++.+++ ..+..
T Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~-- 300 (376)
T 3hsy_A 224 -LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR-- 300 (376)
T ss_dssp -GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC--
T ss_pred -HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--
T ss_conf -77606775844999764885579999999974242114787776502258999999999999999998547762347--
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 8899876564333--34544575589999977056677425399931997000218999922572699988628999300
Q 003633 236 HELPDSKATRVQL--EQLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIHRVGYWFDGSGFSV 313 (806)
Q Consensus 236 ~~~~~~~~~~~~~--~~~~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~~~~~~~vG~w~~~~~l~~ 313 (806)
+....| ....+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.+++++.||+|++.+||+.
T Consensus 301 -------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 301 -------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp -------CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred -------CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEE
T ss_conf -------8787157999987577289999998367678765546789998734348999953898627789838877100
No 8
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=1.00 E-value=1 Score=318.59 Aligned_cols=308 Identities=19% Similarity=0.329 Sum_probs=244.5
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 7400366987288243699786657-899538710793889999999997819829999998297641159999999985
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK 80 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~ 80 (806)
++++++.+++|+|||++++|.|+++ +||||||+.|+|..|+.++++++++|||+||++|+.||+||+..++.+.+++++
T Consensus 144 va~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~ 223 (496)
T 3ks9_A 144 VQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQ 223 (496)
T ss_dssp HHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99988546546988776772134766788669914882899999999999759929999985337889999999999997
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 781899975369999946799999730889--980999964961489999999980785588289970731000133446
Q 003633 81 NMAKVSYKLPLPVQFNQHDITVLLNNSKPL--GPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESFSK 158 (806)
Q Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~l~~i~~~--~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~~~ 158 (806)
.|+||++.+.++...+..++..++.+|++. +++||++++....+..+++++++.|+.. .+.||++++|.......
T Consensus 224 ~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~-- 300 (496)
T 3ks9_A 224 EGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI-- 300 (496)
T ss_dssp TTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH--
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCC-CEEEEEECHHCCCCCCC--
T ss_conf 695599999978888878999999999840686089999448079999999999718777-47999962011565112--
Q ss_pred CCHHHHHHCCCEEEEEEECCCCHHHHHHHHH---------------HHHHCCCC-----------------CCCCC----
Q ss_conf 8833553116228999717999034779999---------------76201488-----------------87778----
Q 003633 159 MNQTSLRILQGVVGLRQHTPDSIPKKAFLSR---------------WSGMQQKG-----------------LVSAG---- 202 (806)
Q Consensus 159 ~~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~---------------~~~~~~~~-----------------~~~~~---- 202 (806)
......++|++++.++.++.+.+++|... |...|++. +++..
T Consensus 301 --~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~ 378 (496)
T 3ks9_A 301 --EGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYV 378 (496)
T ss_dssp --TTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCC
T ss_pred --CCCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --344311373599861577671357672047868788997899999997399888876666654677998544455544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE-EEEECC
Q ss_conf 8620344455798999999998760675424788899876564333345445755899999770566774253-999319
Q 003633 203 LNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSGQ-VQFNQD 281 (806)
Q Consensus 203 ~~~~~~~aYDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~l~~~~f~g~tG~-i~fd~~ 281 (806)
.......+|+||+++|+|||+++.+.... ....|.....+ .+++|+++|++++|++.+|+ +.||++
T Consensus 379 ~~~~~~~vy~AVyavAhALh~m~~~~~~~------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~ 445 (496)
T 3ks9_A 379 QDSKMGFVINAIYAMAHGLQNMHHALCPG------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEK 445 (496)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHSTT------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 43137899999999999999998642789------------88777677778-989999998736775888998897899
Q ss_pred CCEECCCEEEEEEEC--C---CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 970002189999225--7---269998862899930049654358887777533463103618998567871
Q 003633 282 RNIVSRGYDVINIDK--M---EIHRVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRG 348 (806)
Q Consensus 282 G~~~~~~y~I~n~~~--~---~~~~vG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~ 348 (806)
|+ ....|+|+|++. + .+++||.|++ ..|. .+...| |.++..++|+|
T Consensus 446 gd-~~~~YdI~n~~~~~~~~~~~~~VG~~~~-~~l~------------------i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 446 GD-APGRYDIMNLQYTEANRYDYVHVGTWHE-GVLN------------------IDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp SC-CCCEEEEEEEEECC--CEEEEEEEEEET-TEEE------------------ECTTTC------------
T ss_pred CC-CCCEEEEEEEEECCCCCEEEEEEEEEEC-CEEE------------------EEHHHC-CCCCCCCCCCC
T ss_conf 98-6504899999987999789999999808-7588------------------825435-06999878999
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=1.00 E-value=1 Score=315.50 Aligned_cols=306 Identities=21% Similarity=0.355 Sum_probs=248.7
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCCC-CCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 7400366987288243699786657-899538710793889999999997819829999998297641159999999985
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSAL-QFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK 80 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~~-~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~ 80 (806)
++++++.+++|+|++++++|.|++. +||||||+.|++..|+.++++++++++|++|++||.|++||....+.+.+.+++
T Consensus 101 ~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~ 180 (433)
T 4f11_A 101 IAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYG 180 (433)
T ss_dssp HHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99988756935997156883444643488669935866778999999999849938999996561467899999999987
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC------
Q ss_conf 78189997536999994679999973088998099996496148999999998078558828997073100013------
Q 003633 81 NMAKVSYKLPLPVQFNQHDITVLLNNSKPLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLE------ 154 (806)
Q Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~l~~i~~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~------ 154 (806)
.|+||++...++. ++...+.+|+++++|+|++++....+..++++|+++||...+|+||.+++....+.
T Consensus 181 ~g~~v~~~~~~~~-----d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 255 (433)
T 4f11_A 181 EDIEISDTESFSN-----DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTE 255 (433)
T ss_dssp SSCEEEEEEEESS-----CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC---
T ss_pred CCCEEEEEECCCC-----CHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCC
T ss_conf 6965999862683-----78999999862798199996757999999999998498789769998672157674044667
Q ss_pred --CCCCCCHHHHHHCCCEEEEEEECCCC--------HHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --34468833553116228999717999--------0347799997620-148887778862034445579899999999
Q 003633 155 --SFSKMNQTSLRILQGVVGLRQHTPDS--------IPKKAFLSRWSGM-QQKGLVSAGLNTYGLYAYDTVWAVARSIDK 223 (806)
Q Consensus 155 --~~~~~~~~~~~~~~gvl~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~aYDav~~la~Al~~ 223 (806)
...+......+.++|++++.++.+.. +..++|.++|+++ ++ ..++.+++++||||+++|+|+++
T Consensus 256 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-----~~~~~~a~~~YDAv~~la~Al~~ 330 (433)
T 4f11_A 256 ANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-----VGPSKFHGYAYDGIWVIAKTLQR 330 (433)
T ss_dssp ---CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-----SCCCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8888978899999971778888863377887555778889999999874378-----87663035689999999999999
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCEEEEEEECCCEE
Q ss_conf 87606-754247888998765643333--454457558999997705667742539993199700021899992257269
Q 003633 224 FINEH-NITFSASHELPDSKATRVQLE--QLKVFDGGTFLLRKLLQTNFTGLSGQVQFNQDRNIVSRGYDVINIDKMEIH 300 (806)
Q Consensus 224 ~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~L~~~l~~~~f~g~tG~i~fd~~G~~~~~~y~I~n~~~~~~~ 300 (806)
+..+. ... .+.++. ....+.++.+|+++|++++|.|++|+++| ++|++. ..|+|+++++++++
T Consensus 331 a~~~~~~~~------------~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~I~~~~~g~~~ 396 (433)
T 4f11_A 331 AMETLHASS------------RHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIKFTQFQDSREV 396 (433)
T ss_dssp HHHHHHHSS------------SCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEEEEEEETTEEE
T ss_pred HHHHHHCCC------------CCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCEEEEE-ECCCEE-EEEEEEEEECCCEE
T ss_conf 999974058------------7775346535518999999999974689703058999-569541-06899997789168
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 998862899930049654358887777533463103618998567871
Q 003633 301 RVGYWFDGSGFSVLPPETLKGKNVSHSQLDWKLQNITWPGGKTETPRG 348 (806)
Q Consensus 301 ~vG~w~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~P~~ 348 (806)
.||+|++... .+ ..+.+.|.|||+..+..++
T Consensus 397 ~VG~~~~~~~-------~l----------~~~~~~i~W~~~~~P~D~~ 427 (433)
T 4f11_A 397 KVGEYNAVAD-------TL----------EIINDTIRFQGSEPPKDDY 427 (433)
T ss_dssp EEEEEETTTT-------EE----------EECTTTCCCSSSSCCCSSG
T ss_pred EEEEEECCCC-------EE----------EEECCCEECCCCCCCCCCC
T ss_conf 9999977888-------68----------9727721888988798865
No 10
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=1.00 E-value=1 Score=314.68 Aligned_cols=286 Identities=19% Similarity=0.398 Sum_probs=230.7
Q ss_pred HHCCCCCCCCCEEECCCCCCCCCC-CCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 740036698728824369978665-7899538710793889999999997819829999998297641159999999985
Q 003633 2 ISEVANGLKVPLVSFAATDPTLSA-LQFPYFIRSTQSDSQQMAAMADLIDFYGWKEVIAIYVDDDYGRNGISALSNMLEK 80 (806)
Q Consensus 2 va~i~~~~~vP~Is~~at~p~ls~-~~~p~f~Rt~psd~~q~~ai~~ll~~f~W~~v~iI~~dd~~g~~~~~~l~~~l~~ 80 (806)
++++++.+++|+|||++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|+.||+||+...+.+.+.+.+
T Consensus 133 va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~ 212 (481)
T 3mq4_A 133 VANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKE 212 (481)
T ss_dssp HHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC--
T ss_pred HHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99999727988880665873346766688569956952889999999999779839999997443689999999999998
Q ss_pred -CCCEEEEEECCCCCCCHH--HHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf -781899975369999946--7999997308-899809999649614899999999807855882899707310001334
Q 003633 81 -NMAKVSYKLPLPVQFNQH--DITVLLNNSK-PLGPRVYVVHVSPDPGLRIFTTAQKLQMMTNNYVWLATDWLSATLESF 156 (806)
Q Consensus 81 -~g~~i~~~~~~~~~~~~~--~~~~~l~~i~-~~~~rvivv~~~~~~~~~i~~~a~~~gm~~~~~~wI~t~~~~~~~~~~ 156 (806)
.|+||++.+.++...... ++...+.+++ +++++||++++....+..+++++++.|+.. .++||+++.|.......
T Consensus 213 ~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~ 291 (481)
T 3mq4_A 213 AGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL 291 (481)
T ss_dssp -CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------CCCEEEC----------
T ss_pred HCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCC
T ss_conf 69879999897378875126789999999974489779999987699999999999716885-56999978501255543
Q ss_pred CCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHH---------------HHHHCCCC-----------------CCCC---
Q ss_conf 468833553116228999717999034779999---------------76201488-----------------8777---
Q 003633 157 SKMNQTSLRILQGVVGLRQHTPDSIPKKAFLSR---------------WSGMQQKG-----------------LVSA--- 201 (806)
Q Consensus 157 ~~~~~~~~~~~~gvl~~~~~~~~~~~~~~f~~~---------------~~~~~~~~-----------------~~~~--- 201 (806)
......++|++++.++..+.|.+++|... |+..|++. ++..
T Consensus 292 ----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~ 367 (481)
T 3mq4_A 292 ----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKD 367 (481)
T ss_dssp -----------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTS
T ss_pred ----CCCCHHHCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----3544210637999637675635777764088675889779999999866997887666556657888985544767
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE-EEE
Q ss_conf ---8862034445579899999999876067542478889987656433334544575589999977056677425-399
Q 003633 202 ---GLNTYGLYAYDTVWAVARSIDKFINEHNITFSASHELPDSKATRVQLEQLKVFDGGTFLLRKLLQTNFTGLSG-QVQ 277 (806)
Q Consensus 202 ---~~~~~~~~aYDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~~~l~~~~f~g~tG-~i~ 277 (806)
........+||||+++|+|||+++.+... .....|.....+ .+++|+++|++++|++.+| .+.
T Consensus 368 ~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------------~~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~ 434 (481)
T 3mq4_A 368 SNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA------------DYRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVM 434 (481)
T ss_dssp SCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----------------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC------------CCCCCCCCCCCC-CHHHHHHHHHCCEEECCCCCEEE
T ss_conf 76434320326999999999999999873288------------988788787776-78888777701211268999899
Q ss_pred EECCCCEECCCEEEEEEE--CC---CEEEEEEEE
Q ss_conf 931997000218999922--57---269998862
Q 003633 278 FNQDRNIVSRGYDVINID--KM---EIHRVGYWF 306 (806)
Q Consensus 278 fd~~G~~~~~~y~I~n~~--~~---~~~~vG~w~ 306 (806)
||++|+ ....|+|+|++ ++ .+++||.|+
T Consensus 435 fd~~Gd-~~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 435 FNKNGD-APGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp CCTTSC-CCCEEEEEEEC-----CCCEEEEEEEE
T ss_pred ECCCCC-CCEEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf 789999-740379999997799857889998981
Done!