Query 003636
Match_columns 806
No_of_seqs 385 out of 3645
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 18:15:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003636.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1685-1688//hhsearch_pdb/003636hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s28_A Sucrose synthase 1; gly 1.0 1 1 1525.5 64.0 800 2-804 4-803 (816)
2 2r60_A Glycosyl transferase, g 1.0 1 1 381.8 37.6 436 275-771 4-460 (499)
3 3vue_A GBSS-I, granule-bound s 1.0 1 1 363.2 32.0 438 278-771 9-512 (536)
4 3fro_A GLGA glycogen synthase; 1.0 1 1 357.3 37.7 401 278-770 2-430 (439)
5 3c48_A Predicted glycosyltrans 1.0 1 1 355.3 38.3 402 276-770 18-425 (438)
6 1rzu_A Glycogen synthase 1; gl 1.0 1 1 336.4 31.6 433 279-770 1-475 (485)
7 2qzs_A Glycogen synthase; glyc 1.0 1 1 335.1 33.0 431 279-770 1-476 (485)
8 3okp_A GDP-mannose-dependent a 1.0 1 1 328.0 35.4 369 277-770 3-379 (394)
9 2jjm_A Glycosyl transferase, g 1.0 1 1 325.8 35.8 359 299-770 24-385 (394)
10 2iw1_A Lipopolysaccharide core 1.0 1 1 322.4 17.8 367 279-770 1-371 (374)
No 1
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=1.00 E-value=1 Score=1525.49 Aligned_cols=800 Identities=68% Similarity=1.149 Sum_probs=772.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCEEEE
Q ss_conf 98878877340787998886719999999999986598532314689999733069434455688967899842113445
Q 003636 2 AAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIV 81 (806)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 81 (806)
++++|+|++||+|++++++++||+++++||++|+++||++||+|||+++|+++|+ .+++++.+|+||++|++||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 81 (816)
T 3s28_A 4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPE--QTRKKLEGGPFFDLLKSTQEAIV 81 (816)
T ss_dssp -----------------------CTTHHHHHHHHHHHTCSEEEEHHHHHHTTTTT--SCGGGCCCSTHHHHHHTEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHEEE
T ss_conf 5431114334888899899975999999999998629972029999999999998--62203346819999985241044
Q ss_pred CCCEEEEEECCCCCEEEEEEEECCCCEEEECCHHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 09828999858874089999841861034238677753100002564589860443055555678888889998751335
Q 003636 82 LPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDASFNERFVLELDFEPFNATFPRPNRSSSIGNGVQF 161 (806)
Q Consensus 82 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (806)
.|||||||||||||+|||+|||++||+||+|||+|||+|||+|||++.+++++||+||+|||++||++++|+||||||+|
T Consensus 82 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (816)
T 3s28_A 82 LPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDF 161 (816)
T ss_dssp CSSEEEEEEEEETTEEEEEEEETTSSCEEEECHHHHHHHHHHHHHSSCCCTTSCEEECGGGGTTSCCCCCGGGTTBHHHH
T ss_pred CCCEEEEEECCCCCCEEEEEEEHHHCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 68727999828874259999873007114536999988689853887788870577645543579988986544574888
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 44642101278988860589998633349913221454689889999999999972179999993347998410387665
Q 003636 162 LNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLNDRIQSISRLQSSLSKAEDHLSKLPPDTPFSQFEYVLQGMGFEKG 241 (806)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 241 (806)
||||||||||+|+++++|||+||++|+|+|++|||||||+|+.+|+++|++|++||+++|+||||++|+++||+||||||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (816)
T 3s28_A 162 LNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERG 241 (816)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHCEETTEEBSBCTTCCSHHHHHHHHHHHHHHHHHSCTTCBHHHHHHHHHHTTBCBC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88887766548915557999999972349906410587679999999999999998549999988999999997288887
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 48608989999998898432999441867643799830699984564576555568887443300037889999999999
Q 003636 242 WGDTAEHVLEMMHLLLDILQAPDPSTLEKFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLL 321 (806)
Q Consensus 242 w~~~~~~~~~~~~~l~~~l~~p~~~~l~~~~~r~p~~~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~ 321 (806)
|||||+||+|||++|+++|++|||+++|+|++|+||+|+|+++|+||+|+|.+++|.||||||++||+||+|||+++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~ 321 (816)
T 3s28_A 242 WGDNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQ 321 (816)
T ss_dssp SCSBHHHHHHHHHHHHHHHHSCCHHHHHHHHHHSCCCCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf 68768999999999999851999630777736588524899984776657544578888898365099899899999999
Q ss_pred HHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99988995200215995567999888656430010597766999834877663211235557752229999999999999
Q 003636 322 RIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEIT 401 (806)
Q Consensus 322 ~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~i~g~~~v~I~rvp~~~~~~~~~~~isr~~i~pyl~~f~~~~~~~i~ 401 (806)
+|+++||+|+|+|+|+|+.+++..|+.|+++.+.+.+++|++|+|+|+++.++++++|++++.+|+|+..|...+...+.
T Consensus 322 ~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il 401 (816)
T 3s28_A 322 RIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELS 401 (816)
T ss_dssp HHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99977996200168996898787777657751155486975999966877665433456577889999999999999999
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEC
Q ss_conf 88299952999917990699999999739959999539975559997035753210000000222889986308999924
Q 003636 402 AELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITS 481 (806)
Q Consensus 402 ~~~~~kPDIIh~~~~~~~lva~llar~lgvp~v~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~ 481 (806)
....++|||||+|++.+++++.++++++|+|+|+|.|+++..++..++.+|+.+...|++++++.+|..+++.||.||++
T Consensus 402 ~~~~~~PDVIHsH~~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~ 481 (816)
T 3s28_A 402 KELNGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITS 481 (816)
T ss_dssp HHCSSCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEES
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
T ss_conf 96589973999688538999999999759988999816630012223301556778888988888999999849999988
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCC
Q ss_conf 99888410244453244434555440001026887899679953897788889983689988742011011116944321
Q 003636 482 TYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQND 561 (806)
Q Consensus 482 S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~v~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~ 561 (806)
|.++++.+.+.+++|.++.+|++|++|++++|++++++|+.|||||+|.+.|.|......+....++.++..++++.+.+
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 89999999988877644201354112210122446778879988974788728631035543200232000124605677
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 11388779999799998137767897899999998123699839999937479988753577999999999999849999
Q 003636 562 EHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDG 641 (806)
Q Consensus 562 ~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~ 641 (806)
+.+|++.++++++|+++||+++.||++.+++|++++.+.+++++|+|+|+|++ ..+.+.++.++.+++.++++++++.+
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~-~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRR-KESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTT-SCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77444578998399997447221799999999999785579969999968875-33343356999999999999749987
Q ss_pred CEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 48990355676883789999971282999779989886899999992997998487671000024870999899999999
Q 003636 642 QFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQA 721 (806)
Q Consensus 642 ~V~flG~~~~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~p~d~e~l 721 (806)
+|.|+|++.+.++.+++++++++++|+||+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|++++|+|++++
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred CEEECCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHCCCCCEEEECCCCHHHH
T ss_conf 28981675566899999999995690999888755764999999980999999689876999706981899689999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998740089999999999999999993999999999999998820136401787899876999998664100100
Q 003636 722 AELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRDLVS 801 (806)
Q Consensus 722 A~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 801 (806)
+++|.++++++..|++.+++|+++|++++.++|||+.++++++++|+.|+||+++++++|++++||+||||+|+|||||+
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~r~~~~ryle~~~~l~~~~~~~ 800 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQ 800 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999875269999999999999999986899999999999999976754213545388888999999986056775
Q ss_pred CCC
Q ss_conf 048
Q 003636 802 TSN 804 (806)
Q Consensus 802 ~~~ 804 (806)
++|
T Consensus 801 ~~~ 803 (816)
T 3s28_A 801 AVP 803 (816)
T ss_dssp HSC
T ss_pred CCC
T ss_conf 088
No 2
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=1.00 E-value=1 Score=381.76 Aligned_cols=436 Identities=29% Similarity=0.492 Sum_probs=315.3
Q ss_pred CCCCCEEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCC
Q ss_conf 99830699984564576555--5688874433000378899999999999998899520021599556799988865643
Q 003636 275 LPMVFNVVILSPHGYFGQAN--VLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQR 352 (806)
Q Consensus 275 ~p~~~rIviis~h~~~~~~~--~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~ 352 (806)
+.+.|||++++++++|.... +.+.+..||.++++. +|++.|.++||+|+ |+|..........+...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~ 71 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVK--------EVSLALAEMGVQVD----IITRRIKDENWPEFSGE 71 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCCBTTBGGGCCS
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCHHHH
T ss_conf 5445249999657774434423478888799433499--------99999985598489----99578872336511356
Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 00105977669998348776632112355577522299999999999998829995299991799069999999973995
Q 003636 353 LERVSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT 432 (806)
Q Consensus 353 le~i~g~~~v~I~rvp~~~~~~~~~~~isr~~i~pyl~~f~~~~~~~i~~~~~~kPDIIh~~~~~~~lva~llar~lgvp 432 (806)
.+......+++++++|..... +..+..+|.++..+...+.+.+... ..+||+||+|.+..++.+.++++..++|
T Consensus 72 ~~~~~~~~gv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~Divh~~~~~~~~~~~~~~~~~~~p 145 (499)
T 2r60_A 72 IDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKIINFYREE-GKFPQVVTTHYGDGGLAGVLLKNIKGLP 145 (499)
T ss_dssp EEECTTCSSEEEEEECCSCSS-----CCCGGGCGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHCCC
T ss_pred HHHCCCCCCEEEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 775067898179982577767-----7688999998999999999999853-8998889975786207999988735996
Q ss_pred EEEEECCCCCCCCCC---CHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999953997555999---70357532100000002228899863089999249988841024445324443455544000
Q 003636 433 QCTIAHALEKTKYPD---SDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYR 509 (806)
Q Consensus 433 ~v~t~H~l~~~k~~~---s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~ 509 (806)
++.+.|+........ .+.....+...+.+......+...++.+|.|+++|....+...+..
T Consensus 146 ~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~---------------- 209 (499)
T 2r60_A 146 FTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHD---------------- 209 (499)
T ss_dssp EEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSG----------------
T ss_pred EEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH----------------
T ss_conf 8998068400111344147877612455678889999999998468999988889999998641----------------
Q ss_pred EECC-C-CC-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCC-----CCCCCCCCEEEEEECC
Q ss_conf 1026-8-87-8996799538977888899836899887420110111169443211138-----8779999799998137
Q 003636 510 VVHG-I-DV-FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVG-----TLSDRSKPIVFSMARL 581 (806)
Q Consensus 510 ~~~g-i-~v-~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~~G-----il~~~~k~iIl~vGRL 581 (806)
..| + +. ...|+.+||||+|.+.|.+......+. ..++.+| + ++++++|+++||+
T Consensus 210 -~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~---------------~~r~~~~~~~~~~--~~~~~~i~~vGrl 271 (499)
T 2r60_A 210 -LYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKA---------------KITKYLERDLGSE--RMELPAIIASSRL 271 (499)
T ss_dssp -GGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHH---------------HHHHHHHHHSCGG--GTTSCEEEECSCC
T ss_pred -CCCCCCCCCCCCCEEEECCCCCHHHCCCCCHHHHHH---------------HHHHHHCCCCCCC--CCCCCEEEEEECC
T ss_conf -246422346788769987995866568641035678---------------9998836433456--8887689996068
Q ss_pred CCCCCHHHHHHHHHHHHCCCCC-EEEEEEECCCCCCCCC---CHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
Q ss_conf 7678978999999981236998-3999993747998875---35779999999999998499994899035567688378
Q 003636 582 DHVKNMTGLVECYGKNSQLREL-VNLVVVAGYIDVNKSK---DREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGE 657 (806)
Q Consensus 582 ~~~Kgi~~LieA~~~l~~~~~~-v~LvIVG~g~~~~~~~---d~ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~e 657 (806)
.+.||++.+++|+.++.+..++ +.|+|+|++..+.++. +.++.++.++++++++++++.++|.|+| .++.++
T Consensus 272 ~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G----~v~~~~ 347 (499)
T 2r60_A 272 DQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFP----LNSQQE 347 (499)
T ss_dssp CGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEE----CCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC----CCCHHH
T ss_conf 5015889999999999873888659999878887532211113201479999999998649986099878----899899
Q ss_pred HHHHHHCCC----CEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 999997128----2999779989886899999992997998487671000024870999899999999999999987400
Q 003636 658 LYRYIADTK----GAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCK 733 (806)
Q Consensus 658 l~~~la~aa----DifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~ 733 (806)
+..+++. + |++|+||.+|+||++++|||+||+|||+|+.||..|++.++.+|++++++|+++++++|.+++
T Consensus 348 ~~~~~~~-a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll---- 422 (499)
T 2r60_A 348 LAGCYAY-LASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAF---- 422 (499)
T ss_dssp HHHHHHH-HHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHH----
T ss_pred HHHHHHH-CCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHHH----
T ss_conf 9999995-57679889978645897968999997699889816887788734786079958999999999999998----
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 89999999999999999993999999999999998820
Q 003636 734 ENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYG 771 (806)
Q Consensus 734 ~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~~ 771 (806)
+|++.+.+|++++++++.++|||+.+++++.++|+...
T Consensus 423 ~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 460 (499)
T 2r60_A 423 ESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIA 460 (499)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999875799999999999999987
No 3
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=1.00 E-value=1 Score=363.23 Aligned_cols=438 Identities=15% Similarity=0.155 Sum_probs=282.9
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEEE-
Q ss_conf 3069998456457655556888744330003788999999999999988995200215995567999888656430010-
Q 003636 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV- 356 (806)
Q Consensus 278 ~~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~i- 356 (806)
.|||+++|...+| ..++||...++- .|+++|+++||+|. |+++.++.............+
T Consensus 9 ~MkIl~vs~E~~P-------~~K~GGLadvv~--------~L~~aL~~~G~~V~----Vi~P~Y~~~~~~~~~~~~~~~~ 69 (536)
T 3vue_A 9 HMNVVFVGAEMAP-------WSKTGGLGDVLG--------GLPPAMAANGHRVM----VISPRYDQYKDAWDTSVVAEIK 69 (536)
T ss_dssp CCEEEEECSCBTT-------TBCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCSCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEECCC-------HHCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCHHHHHHCCCCEEEEEE
T ss_conf 7389999872431-------212676999999--------99999997699699----9904850222422651689998
Q ss_pred -C-CCCCEEEEEECCCCCCCC-CC--CCCCC------CCCH------HH---HHHHH--HHHHHHHHHHC----------
Q ss_conf -5-977669998348776632-11--23555------7752------22---99999--99999999882----------
Q 003636 357 -S-GTEHTHILRVPFRSEKGI-LR--QWISR------FDVW------PY---LETFT--EDVGSEITAEL---------- 404 (806)
Q Consensus 357 -~-g~~~v~I~rvp~~~~~~~-~~--~~isr------~~i~------py---l~~f~--~~~~~~i~~~~---------- 404 (806)
. ....+.+.+.+.....-+ +. .+..+ ..++ +| .++|+ ..+..++...+
T Consensus 70 ~~~~~~~~~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~ 149 (536)
T 3vue_A 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKG 149 (536)
T ss_dssp ETTEEEEEEEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCS
T ss_pred ECCCEEEEEEEEEEECCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 36833789999999789559996475541233466778666887567664179999999999999999730265301101
Q ss_pred -CCCCEEEEECCCCCHHHHHHHHHHC-------CCCEEEEECCCCCCCCC-CCH--------HHHHH--HH---HHHHCH
Q ss_conf -9995299991799069999999973-------99599995399755599-970--------35753--21---000000
Q 003636 405 -QGFPDFIIGNYSDGNLVASLLAYKM-------GITQCTIAHALEKTKYP-DSD--------IYWKK--FD---EKYHFS 462 (806)
Q Consensus 405 -~~kPDIIh~~~~~~~lva~llar~l-------gvp~v~t~H~l~~~k~~-~s~--------~~~~~--~~---~~y~~~ 462 (806)
..++||+|+|+|.+++++.+++... ++|.|+|+|++...... ... ..+.. +. ....+.
T Consensus 150 ~~~~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (536)
T 3vue_A 150 TYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEG 229 (536)
T ss_dssp CCCSCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCHHHHHHCCCCCCCC
T ss_conf 47998799977604899999999864023320256345421574224555533364418965640103333114641003
Q ss_pred HHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 02228899863089999249988841024445324443455544000102688789967995389778888998368998
Q 003636 463 CQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKR 542 (806)
Q Consensus 463 ~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~v~~~Ki~VIpnGvD~~~f~P~~~~~~r 542 (806)
.........+..||.|+|+|+..+.......+ +.+.. .... ...++.+|+||||.+.|.|.++....
T Consensus 230 ~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~-------~g~~l----~~~~--~~~~i~~I~NGiD~~~~~p~~d~~~~ 296 (536)
T 3vue_A 230 RKINWMKAGILEADRVLTVSPYYAEELISGIA-------RGCEL----DNIM--RLTGITGIVNGMDVSEWDPSKDKYIT 296 (536)
T ss_dssp EEEEHHHHHHHHCSEEEESCHHHHHHHHTTCC-------CCSSS----CCCS--CCCSCEECCCCCCTTTSCTTTCSSSS
T ss_pred CCHHHHHHHHHHCCEEEECCHHHHHHHHCCCC-------CCCCC----CCCC--CCCCEEEEECCCCHHHCCCCCCCCCC
T ss_conf 30439999998536778768788534312634-------45220----0125--45781899799664214887762100
Q ss_pred HHHH-HCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCH
Q ss_conf 8742-011011116944321113887799997999981377678978999999981236998399999374799887535
Q 003636 543 LTAL-HGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDR 621 (806)
Q Consensus 543 l~~~-~~~~~~~l~~~~~~~~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ 621 (806)
.... ...++.+..++...++.+|+..+++.|+|+++||+.++||++.|++|+.++.+ .+.+|+|+|.|..
T Consensus 297 ~~~~~~~~~~~K~~~k~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~--~~~~l~l~G~G~~------- 367 (536)
T 3vue_A 297 AKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ--EDVQIVLLGTGKK------- 367 (536)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTT--SSCEEEEECCBCH-------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH--HCCEEEEEECCCC-------
T ss_conf 1444345556567779999986199879997589999653023784789999997685--4985999954672-------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 77999999999999849999489903556768837899999712829997799898868999999929979984876710
Q 003636 622 EEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPA 701 (806)
Q Consensus 622 ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~ 701 (806)
.....+......+ .+++.+.+ ..+.+++..+++. +|+||+||++|+||++++|||+||+|||+|+.||.+
T Consensus 368 ---~~~~~~~~~~~~~--~~~v~~~~----~~~~~~~~~~~~~-aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~ 437 (536)
T 3vue_A 368 ---KFEKLLKSMEEKY--PGKVRAVV----KFNAPLAHLIMAG-ADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLV 437 (536)
T ss_dssp ---HHHHHHHHHHHHS--TTTEEEEC----SCCHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHH
T ss_pred ---HHHHHHHHHHHHC--CCCEEEEE----ECCHHHHHHHHHH-HHEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCH
T ss_conf ---6899999987616--88549997----1468889999986-234253465689888999999869989990799822
Q ss_pred CCCCCCCCEE----------EECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 0002487099----------989999999999999998740089999999999999999993999999999999998820
Q 003636 702 EIIEHGASGF----------HIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVYG 771 (806)
Q Consensus 702 EiI~dg~~G~----------li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~~ 771 (806)
|+|.||++|+ +++|.|+++++++|.+++. +.+++ .|++|.++++ .++|||+..|++|+++|+..+
T Consensus 438 e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~-~~~~~-~~~~~~~~am---~~~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 438 DTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK-VVGTP-AYEEMVRNCM---NQDLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH-HTTSH-HHHHHHHHHH---HSCCSSHHHHHHHHHHHHTTC
T ss_pred HEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH-HCCCH-HHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHH
T ss_conf 202279876324667775158799999999999999998-52959-9999999987---735999999999999999860
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=1.00 E-value=1 Score=357.26 Aligned_cols=401 Identities=16% Similarity=0.171 Sum_probs=299.0
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCC---------
Q ss_conf 30699984564576555568887443300037889999999999999889952002159955679998886---------
Q 003636 278 VFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT--------- 348 (806)
Q Consensus 278 ~~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~--------- 348 (806)
+|||++++.+.+| +..||.++++. +|++.|+++||+|+ ++|...+......
T Consensus 2 ~MkIl~v~~~~~p--------~~~gG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~~~~~~~~~~~~ 61 (439)
T 3fro_A 2 HMKVLLLGFEFLP--------VKVGGLAEALT--------AISEALASLGHEVL----VFTPSHGRFQGEEIGKIRVFGE 61 (439)
T ss_dssp CCEEEEECSCCTT--------SCSSSHHHHHH--------HHHHHHHHTTCEEE----EEEECTTCSCCEEEEEEEETTE
T ss_pred CEEEEEEECCCCC--------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCHHHHHCCCCCCCC
T ss_conf 5289999502177--------66688999999--------99999997798599----9836778823655246301476
Q ss_pred -CCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHH-HHH-------HHHHHHHHHHHHH--CCCCCEEEEECCCC
Q ss_conf -564300105977669998348776632112355577522-299-------9999999999988--29995299991799
Q 003636 349 -CNQRLERVSGTEHTHILRVPFRSEKGILRQWISRFDVWP-YLE-------TFTEDVGSEITAE--LQGFPDFIIGNYSD 417 (806)
Q Consensus 349 -~~~~le~i~g~~~v~I~rvp~~~~~~~~~~~isr~~i~p-yl~-------~f~~~~~~~i~~~--~~~kPDIIh~~~~~ 417 (806)
....... ....++.+.+++. .. ..+..++. +.. .|...+.+.+... ...+||+||+|++.
T Consensus 62 ~~~~~~~~-~~~~gv~v~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~ 132 (439)
T 3fro_A 62 EVQVKVSY-EERGNLRIYRIGG-GL-------LDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWH 132 (439)
T ss_dssp EEEEEEEE-EEETTEEEEEEES-GG-------GGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGG
T ss_pred CCCEEEEE-CCCCCCEEEEECC-HH-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 53102431-2578840899353-22-------052124667763002325789999999999974447998199946403
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCC
Q ss_conf 06999999997399599995399755599970357532100000002228899863089999249988841024445324
Q 003636 418 GNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYE 497 (806)
Q Consensus 418 ~~lva~llar~lgvp~v~t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~ 497 (806)
.++.+.++++..++|++.+.|+.....++........+.. ..+......+...++.+|.|+++|....+. ..+.
T Consensus 133 ~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~---~~~~-- 206 (439)
T 3fro_A 133 TVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSE-LAPYPDIDPEHTGGYIADIVTTVSRGYLID---EWGF-- 206 (439)
T ss_dssp GHHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGG-GCCSSEECHHHHHHHHCSEEEESCHHHHHH---THHH--
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCCCC-CCCCCEEEHHHHHHHHCCEEEECCHHHHHH---HHHH--
T ss_conf 4345898865269978999653444568567747455100-356663207666554345887268989999---8605--
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCC----HHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4434555440001026887899679953897788889983----689988742011011116944321113887799997
Q 003636 498 SHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYS----EKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKP 573 (806)
Q Consensus 498 ~~~~f~~p~l~~~~~gi~v~~~Ki~VIpnGvD~~~f~P~~----~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil~~~~k~ 573 (806)
++....++.+||||+|.+.|.|.. ....+ ...++.+|+ +++ +
T Consensus 207 ----------------~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~-~ 252 (439)
T 3fro_A 207 ----------------FRNFEGKITYVFNGIDCSFWNESYLTGSRDERK---------------KSLLSKFGM--DEG-V 252 (439)
T ss_dssp ----------------HGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH---------------HHHHHHHTC--CSC-E
T ss_pred ----------------HHHCCCCEEECCCCCCCHHCCCCCCCCHHHHHH---------------HHHHHHCCC--CCC-C
T ss_conf ----------------650477345347888804308432211045669---------------999997399--998-4
Q ss_pred EEEEEECCC-CCCCHHHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 999981377-6789789999999812369--9839999937479988753577999999999999849999489903556
Q 003636 574 IVFSMARLD-HVKNMTGLVECYGKNSQLR--ELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQT 650 (806)
Q Consensus 574 iIl~vGRL~-~~Kgi~~LieA~~~l~~~~--~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V~flG~~~ 650 (806)
+|+++||+. +.||++.+++|+.++.+.. ++++|+|+|+|+. .+.+.+.+++++++ +.+.|.|
T Consensus 253 ~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~----------~~~~~l~~~~~~~~--~~~~~~g--- 317 (439)
T 3fro_A 253 TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP----------ELEGWARSLEEKHG--NVKVITE--- 317 (439)
T ss_dssp EEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCH----------HHHHHHHHHHHHCT--TEEEECS---
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCH----------HHHHHHHHHHHHCC--CEEEECC---
T ss_conf 79997333534366999999999998546678718999807972----------67789999875069--8999728---
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 76883789999971282999779989886899999992997998487671000024870999899999999999999987
Q 003636 651 NRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFG 730 (806)
Q Consensus 651 ~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~ 730 (806)
.++.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ +|++++++|+++++++|.+++
T Consensus 318 -~~~~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll- 393 (439)
T 3fro_A 318 -MLSREFVRELYGS-VDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKAL- 393 (439)
T ss_dssp -CCCHHHHHHHHTT-CSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHH-
T ss_pred -CCCHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEECC-CEEEECCCCHHHHHHHHHHHH-
T ss_conf -7998899999997-799995898788618999999779976973788743168758-448968899899999999998-
Q ss_pred HHCC-CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 4008-999999999999999999399999999999999882
Q 003636 731 KCKE-NPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 731 ~l~~-dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 770 (806)
+ |++.++++++++++++ ++|||+.+++++.++|+..
T Consensus 394 ---~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~ 430 (439)
T 3fro_A 394 ---ELSRSDLSKFRENCKKRA-MSFSWEKSAERYVKAYTGS 430 (439)
T ss_dssp ---HHTTTTTHHHHHHHHHHH-HTSCHHHHHHHHHHHHHTC
T ss_pred ---HCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHH
T ss_conf ---319999999999999987-6472999999999999999
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=1.00 E-value=1 Score=355.30 Aligned_cols=402 Identities=21% Similarity=0.315 Sum_probs=300.6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 98306999845645765555688874433000378899999999999998899520021599556799988865643001
Q 003636 276 PMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLER 355 (806)
Q Consensus 276 p~~~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~ 355 (806)
..+|||++++.+++|. ...|.+..||.+.++. +|++.|.++||+|+ ++|....... .....
T Consensus 18 ~~mmkIl~i~~~~~p~--~~~~~~~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~-----~~~~~ 78 (438)
T 3c48_A 18 GSHMRVAMISMHTSPL--QQPGTGDSGGMNVYIL--------STATELAKQGIEVD----IYTRATRPSQ-----GEIVR 78 (438)
T ss_dssp -CCCEEEEECTTSCTT--CC-------CHHHHHH--------HHHHHHHHTTCEEE----EEEECCCGGG-----CSEEE
T ss_pred CCHHEEEEEEEECCCC--CCCCCCCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-----CCCCC
T ss_conf 0020334577532563--4678788787999999--------99999996699799----9954788777-----54002
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 05977669998348776632112355577522299999999999998829995299991799069999999973995999
Q 003636 356 VSGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCT 435 (806)
Q Consensus 356 i~g~~~v~I~rvp~~~~~~~~~~~isr~~i~pyl~~f~~~~~~~i~~~~~~kPDIIh~~~~~~~lva~llar~lgvp~v~ 435 (806)
. ..++.+++++...... .++..++.++..|...+.+..... ..+||+||+|++..+.++.++++..++|++.
T Consensus 79 ~--~~~v~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~ 150 (438)
T 3c48_A 79 V--AENLRVINIAAGPYEG-----LSKEELPTQLAAFTGGMLSFTRRE-KVTYDLIHSHYWLSGQVGWLLRDLWRIPLIH 150 (438)
T ss_dssp E--ETTEEEEEECCSCSSS-----CCGGGGGGGHHHHHHHHHHHHHHH-TCCCSEEEEEHHHHHHHHHHHHHHHTCCEEE
T ss_pred C--CCCEEEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 5--6874899924787543-----236677899999999999999841-6899989947755789999999974999899
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 95399755599970357532100000002228899863089999249988841024445324443455544000102688
Q 003636 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (806)
Q Consensus 436 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~ 515 (806)
+.|+............ . ..........+...++.+|.|+++|....+...+ ..|++
T Consensus 151 ~~h~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~-------------------~~g~~ 206 (438)
T 3c48_A 151 TAHTLAAVKNSYRDDS----D-TPESEARRICEQQLVDNADVLAVNTQEEMQDLMH-------------------HYDAD 206 (438)
T ss_dssp ECSSCHHHHSCC--------C-CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHH-------------------HHCCC
T ss_pred EECCCCCCCCCCCCCC----C-CCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH-------------------HHCCC
T ss_conf 9427740111110026----7-7315789999999984089999847999999999-------------------85898
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 78996799538977888899836899887420110111169443211138877999979999813776789789999999
Q 003636 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (806)
Q Consensus 516 v~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 595 (806)
..|+.+||||+|.+.|.+....... ..++.+|+ ++++++|+++||+.+.||++.+++|+.
T Consensus 207 --~~k~~vi~ngvd~~~~~~~~~~~~~----------------~~r~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 266 (438)
T 3c48_A 207 --PDRISVVSPGADVELYSPGNDRATE----------------RSRRELGI--PLHTKVVAFVGRLQPFKGPQVLIKAVA 266 (438)
T ss_dssp --GGGEEECCCCCCTTTSCCC----CH----------------HHHHHTTC--CSSSEEEEEESCBSGGGCHHHHHHHHH
T ss_pred --HHHEEEECCCCCCCCCCCCCCCHHH----------------HHHHHCCC--CCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf --2026882697661104786620245----------------66886089--989848999743156679899999999
Q ss_pred HHHCCCC--CEEEEEEEC----CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 8123699--839999937----4799887535779999999999998499994899035567688378999997128299
Q 003636 596 KNSQLRE--LVNLVVVAG----YIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAF 669 (806)
Q Consensus 596 ~l~~~~~--~v~LvIVG~----g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aaDif 669 (806)
++.+..+ +++|+|+|+ |+. .+.+.++++++++.++|.|+| .++.+++..+++. +|++
T Consensus 267 ~l~~~~p~~~~~l~i~G~~~~~g~~------------~~~l~~~~~~~~l~~~v~~~g----~~~~~~~~~~~~~-adv~ 329 (438)
T 3c48_A 267 ALFDRDPDRNLRVIICGGPSGPNAT------------PDTYRHMAEELGVEKRIRFLD----PRPPSELVAVYRA-ADIV 329 (438)
T ss_dssp HHHHHCTTCSEEEEEECCBC------------------CHHHHHHHHTTCTTTEEEEC----CCCHHHHHHHHHH-CSEE
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCH------------HHHHHHHHHHCCCCCCEEECC----CCCHHHHHHHHHH-CCEE
T ss_conf 9996397766699998188877727------------899999999719878689858----8985889999985-8999
Q ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97799898868999999929979984876710000248709998999999999999999874008999999999999999
Q 003636 670 VQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKR 749 (806)
Q Consensus 670 V~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~ 749 (806)
|+||.+|+||++++|||+||+|||+++.||..|++.++.+|++++++|+++++++|.+++ +|++.+.+|+++++++
T Consensus 330 v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~ 405 (438)
T 3c48_A 330 AVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLL----DDDETRIRMGEDAVEH 405 (438)
T ss_dssp EECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHCCCCEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
T ss_conf 987402687559999987699889627987257750797279879999999999999997----5989999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999399999999999999882
Q 003636 750 IYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 750 v~e~ysw~~~a~~ll~ly~~~ 770 (806)
+.+ |||+.+++++.++|+..
T Consensus 406 ~~~-~s~~~~~~~~~~~~~~~ 425 (438)
T 3c48_A 406 ART-FSWAATAAQLSSLYNDA 425 (438)
T ss_dssp HHH-HHHHHHHHHHHHHHHHH
T ss_pred HHH-CCHHHHHHHHHHHHHHH
T ss_conf 885-79999999999999998
No 6
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=1.00 E-value=1 Score=336.38 Aligned_cols=433 Identities=15% Similarity=0.156 Sum_probs=279.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCC----------
Q ss_conf 0699984564576555568887443300037889999999999999889952002159955679998886----------
Q 003636 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 348 (806)
Q Consensus 279 ~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~---------- 348 (806)
|||++++.+.+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 1rzu_A 1 MNVLSVSSEIYPL-------IKTGGLADVVG--------ALPIALEAHGVRTR----TLIPGYPAVKAAVTDPVKCFEFT 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHTTTCEEE----EEEECCHHHHHHCCSCEEEEEES
T ss_pred CEEEEEEEEECCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCCEEEEEE
T ss_conf 9699994465156-------56654999999--------99999997698699----99156443344435651368999
Q ss_pred --CCCCCEEE-CCCCCEEEEEECCCCCCCCCCC--CCCC--CCCHH----HHHHHHHHHHHHHHHH-CCCCCEEEEECCC
Q ss_conf --56430010-5977669998348776632112--3555--77522----2999999999999988-2999529999179
Q 003636 349 --CNQRLERV-SGTEHTHILRVPFRSEKGILRQ--WISR--FDVWP----YLETFTEDVGSEITAE-LQGFPDFIIGNYS 416 (806)
Q Consensus 349 --~~~~le~i-~g~~~v~I~rvp~~~~~~~~~~--~isr--~~i~p----yl~~f~~~~~~~i~~~-~~~kPDIIh~~~~ 416 (806)
.+...... ....++.+++++...... +. .... ..-|+ .+..|...+.+.+... ...+||+||+|.+
T Consensus 62 ~~~~~~~~~~~~~~~gv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~ 139 (485)
T 1rzu_A 62 DLLGEKADLLEVQHERLDLLILDAPAYYE--RSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDW 139 (485)
T ss_dssp CSSSCCEEEEEEEETTEEEEEEECHHHHC--SSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHH
T ss_pred EECCCEEEEEEEEECCCEEEEEECHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 83087478999996695699984867727--7766558865666530679999999999999998615799988996463
Q ss_pred CCHHHHHHHHHH--CCCCEEEEECCCCCCCC-CCCHH-----HHHHHH-HHHHCHHHHHHHHHHHHHCCEEEECCHHHHH
Q ss_conf 906999999997--39959999539975559-99703-----575321-0000000222889986308999924998884
Q 003636 417 DGNLVASLLAYK--MGITQCTIAHALEKTKY-PDSDI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIA 487 (806)
Q Consensus 417 ~~~lva~llar~--lgvp~v~t~H~l~~~k~-~~s~~-----~~~~~~-~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~ 487 (806)
.+++++.++++. .++|+|.+.|+...... ..... .+..+. ....+......+...++.+|.|+++|....+
T Consensus 140 ~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 219 (485)
T 1rzu_A 140 QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAE 219 (485)
T ss_dssp HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHHCSEEEESCHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHH
T ss_conf 05578999731035899789996675446878877873439980320200013256235999888646779960875899
Q ss_pred HCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC
Q ss_conf 10244453244434555440001026887899679953897788889983689988742011011116944321113887
Q 003636 488 GTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTL 567 (806)
Q Consensus 488 ~~k~~v~qy~~~~~f~~p~l~~~~~gi~v~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil 567 (806)
...+.. | ++.++.+ +++...|+.+||||+|.+.|.|...............+.........++.+|+
T Consensus 220 ~~~~~~--~----g~~~~~~------~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~- 286 (485)
T 1rzu_A 220 EILTAE--F----GMGLEGV------IGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI- 286 (485)
T ss_dssp HTTSHH--H----HTTCHHH------HHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC-
T ss_pred HHHCCC--C----CCCHHHH------HHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-
T ss_conf 983543--5----7665899------98606881697089860205886651100012432445678869999996298-
Q ss_pred CCCC-CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEE-E
Q ss_conf 7999-9799998137767897899999998123699839999937479988753577999999999999849999489-9
Q 003636 568 SDRS-KPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFR-W 645 (806)
Q Consensus 568 ~~~~-k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V~-f 645 (806)
+++ +++|+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|. |
T Consensus 287 -~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v~~~ 351 (485)
T 1rzu_A 287 -DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDV----------ALEGALLAAASRHH--GRVGVA 351 (485)
T ss_dssp -CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCH----------HHHHHHHHHHHHTT--TTEEEE
T ss_pred -CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC--CCEEEE
T ss_conf -88998399997257531287999999999872--6956999968946----------89999999998678--868994
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CCEEEECCC
Q ss_conf 03556768837899999712829997799898868999999929979984876710000248---------709998999
Q 003636 646 IAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHIDPY 716 (806)
Q Consensus 646 lG~~~~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg---------~~G~li~p~ 716 (806)
.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|++++++
T Consensus 352 ~g----~-~~~~~~~~~~~-adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~ 425 (485)
T 1rzu_A 352 IG----Y-NEPLSHLMQAG-CDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPV 425 (485)
T ss_dssp ES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSC
T ss_pred CC----C-CHHHHHHHHHC-CCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHEECCCCCCCCCCCCCCCEEECCC
T ss_conf 38----9-97999999852-999997844688777999999779977980899831132156533234567763486789
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999874008999999999999999999399999999999999882
Q 003636 717 HPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 717 d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 770 (806)
|+++++++|.+++. +.+|++.+++|++++++ ++|||+.++++++++|+..
T Consensus 426 d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~~~ 475 (485)
T 1rzu_A 426 TLDGLKQAIRRTVR-YYHDPKLWTQMQKLGMK---SDVSWEKSAGLYAALYSQL 475 (485)
T ss_dssp SHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHT---CCCBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHH
T ss_conf 99999999999998-72799999999999998---8689699999999999986
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=1.00 E-value=1 Score=335.11 Aligned_cols=431 Identities=15% Similarity=0.140 Sum_probs=279.2
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCC----------
Q ss_conf 0699984564576555568887443300037889999999999999889952002159955679998886----------
Q 003636 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTT---------- 348 (806)
Q Consensus 279 ~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~---------- 348 (806)
|||++++...+|. +..||.+.++. +|+++|+++||+|+ |+|...+......
T Consensus 1 MkIl~v~~~~~P~-------~~~GG~~~~~~--------~la~~L~~~G~~V~----vi~~~~~~~~~~~~~~~~~~~~~ 61 (485)
T 2qzs_A 1 MQVLHVCSEMFPL-------LKTGGLADVIG--------ALPAAQIADGVDAR----VLLPAFPDIRRGVTDAQVVSRRD 61 (485)
T ss_dssp CEEEEECSCBTTT-------BCSSHHHHHHH--------HHHHHHHHTTCEEE----EEEECCHHHHHHCTTCEEEEEEC
T ss_pred CEEEEEEEECCCC-------CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCCCCCCCEEEEEEC
T ss_conf 9699996410466-------56773999999--------99999997498789----99447643454345640578741
Q ss_pred -CCCCCEEE-CCCCCEEEEEECCCCC---CC-CCCCC--CCCCCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCH
Q ss_conf -56430010-5977669998348776---63-21123--5557752229999999999999882-999529999179906
Q 003636 349 -CNQRLERV-SGTEHTHILRVPFRSE---KG-ILRQW--ISRFDVWPYLETFTEDVGSEITAEL-QGFPDFIIGNYSDGN 419 (806)
Q Consensus 349 -~~~~le~i-~g~~~v~I~rvp~~~~---~~-~~~~~--isr~~i~pyl~~f~~~~~~~i~~~~-~~kPDIIh~~~~~~~ 419 (806)
.....+.. ....++.+++++.... .+ ..... ......+.....+...+.+.+.... ..+||+||+|.+..+
T Consensus 62 ~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~ 141 (485)
T 2qzs_A 62 TFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG 141 (485)
T ss_dssp CTTCCEEEEEEEETTEEEEEEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT
T ss_pred CCCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
T ss_conf 56871799999878947999708265068987667754577873589999999999999998456789978996062133
Q ss_pred HHHHHHH-HHCCCCEEEEECCCCCCCCCC-CHH-----HHHHHH-HHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCC
Q ss_conf 9999999-973995999953997555999-703-----575321-00000002228899863089999249988841024
Q 003636 420 LVASLLA-YKMGITQCTIAHALEKTKYPD-SDI-----YWKKFD-EKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKN 491 (806)
Q Consensus 420 lva~lla-r~lgvp~v~t~H~l~~~k~~~-s~~-----~~~~~~-~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~ 491 (806)
+++.+++ +..++|+|.+.|+........ ... ....+. ....+......+...++.+|.|+++|....+...+
T Consensus 142 ~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 221 (485)
T 2qzs_A 142 LAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITE 221 (485)
T ss_dssp THHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHHCSEEEESSHHHHHHTTS
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCEEEECCHHHHHHHHC
T ss_conf 78999754368997899946841357889888876499913213111232465469999987538688568899999854
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCC------CC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCC
Q ss_conf 4453244434555440001026887------89--967995389778888998368998874201101111694432111
Q 003636 492 TVGQYESHTAFTLPGLYRVVHGIDV------FD--PKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEH 563 (806)
Q Consensus 492 ~v~qy~~~~~f~~p~l~~~~~gi~v------~~--~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~ 563 (806)
. ..|+++ .. .|+.+||||+|.+.|.|...............+...-.....++.
T Consensus 222 ~------------------~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 283 (485)
T 2qzs_A 222 P------------------QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIA 283 (485)
T ss_dssp H------------------HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHH
T ss_pred C------------------CCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 0------------------1472468999850667866997469876645864442221236630065778849999987
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 38877999979999813776789789999999812369983999993747998875357799999999999984999948
Q 003636 564 VGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQF 643 (806)
Q Consensus 564 ~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V 643 (806)
+|+..++++++|+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+. .+.+.+++++++++ ++|
T Consensus 284 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~----------~~~~~l~~~~~~~~--~~v 349 (485)
T 2qzs_A 284 MGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDP----------VLQEGFLAAAAEYP--GQV 349 (485)
T ss_dssp HTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECH----------HHHHHHHHHHHHST--TTE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCH----------HHHHHHHHHHHHCC--CCE
T ss_conf 198889997399996667543587999999999862--7948999928956----------78999999997579--938
Q ss_pred E-ECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCC---------CCEEEE
Q ss_conf 9-903556768837899999712829997799898868999999929979984876710000248---------709998
Q 003636 644 R-WIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHG---------ASGFHI 713 (806)
Q Consensus 644 ~-flG~~~~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg---------~~G~li 713 (806)
. |.| . +.+++..+++. +|++|+||.+|+||++++|||+||+|||+|+.||..|++.++ .+|+++
T Consensus 350 ~~~~g----~-~~~~~~~~~~~-adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~ 423 (485)
T 2qzs_A 350 GVQIG----Y-HEAFSHRIMGG-ADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVF 423 (485)
T ss_dssp EEEES----C-CHHHHHHHHHH-CSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEE
T ss_pred EEECC----C-CHHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEECCCCCCCCCCCCCCEEEE
T ss_conf 99478----9-97999999975-889997885678767999999779977987899832552157644344466645997
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 999999999999999874008999999999999999999399999999999999882
Q 003636 714 DPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 714 ~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 770 (806)
+++|+++++++|.+++. +.+|++.+++|++++++ ++|||+.++++++++|+..
T Consensus 424 ~~~d~~~la~~i~~ll~-~~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~ly~~~ 476 (485)
T 2qzs_A 424 EDSNAWSLLRAIRRAFV-LWSRPSLWRFVQRQAMA---MDFSWQVAAKSYRELYYRL 476 (485)
T ss_dssp CSSSHHHHHHHHHHHHH-HHTSHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
T ss_conf 78999999999999998-70899999999999876---3289899999999999986
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=1.00 E-value=1 Score=328.04 Aligned_cols=369 Identities=17% Similarity=0.258 Sum_probs=281.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 83069998456457655556888744330003788999999999999988995200215995567999888656430010
Q 003636 277 MVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERV 356 (806)
Q Consensus 277 ~~~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~i 356 (806)
+.|||+++++... |..||.+.++. .|++.| +||+|+ ++|...+... ....
T Consensus 3 ~~mkIl~v~~~~~---------p~~gG~~~~~~--------~l~~~L--~g~~v~----v~~~~~~~~~-------~~~~ 52 (394)
T 3okp_A 3 ASRKTLVVTNDFP---------PRIGGIQSYLR--------DFIATQ--DPESIV----VFASTQNAEE-------AHAY 52 (394)
T ss_dssp -CCCEEEEESCCT---------TSCSHHHHHHH--------HHHTTS--CGGGEE----EEEECSSHHH-------HHHH
T ss_pred CCCEEEEEECCCC---------CCCCHHHHHHH--------HHHHHH--CCCEEE----EEECCCCCCC-------HHHH
T ss_conf 8866999927668---------86551999999--------999985--697689----9977888642-------4443
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCC-EEE
Q ss_conf 5977669998348776632112355577522299999999999998829995299991799069999999973995-999
Q 003636 357 SGTEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGIT-QCT 435 (806)
Q Consensus 357 ~g~~~v~I~rvp~~~~~~~~~~~isr~~i~pyl~~f~~~~~~~i~~~~~~kPDIIh~~~~~~~lva~llar~lgvp-~v~ 435 (806)
....++.+++++..... ..+ .+...+.+.+.. .+||+||+|..........++++.++| ++.
T Consensus 53 ~~~~~~~~~~~~~~~~~----------~~~----~~~~~l~~~~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~ 115 (394)
T 3okp_A 53 DKTLDYEVIRWPRSVML----------PTP----TTAHAMAEIIRE---REIDNVWFGAAAPLALMAGTAKQAGASKVIA 115 (394)
T ss_dssp HTTCSSEEEEESSSSCC----------SCH----HHHHHHHHHHHH---TTCSEEEESSCTTGGGGHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEECCCCCCC----------CCH----HHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 34566289984565455----------551----469999999876---3898899888544889999997518981999
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 95399755599970357532100000002228899863089999249988841024445324443455544000102688
Q 003636 436 IAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGID 515 (806)
Q Consensus 436 t~H~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~ 515 (806)
+.|+... .|... . .........++.+|.|+++|....+...+. .+
T Consensus 116 ~~h~~~~--------~~~~~-~-----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-------------------~~-- 160 (394)
T 3okp_A 116 STHGHEV--------GWSML-P-----GSRQSLRKIGTEVDVLTYISQYTLRRFKSA-------------------FG-- 160 (394)
T ss_dssp ECCSTHH--------HHTTS-H-----HHHHHHHHHHHHCSEEEESCHHHHHHHHHH-------------------HC--
T ss_pred EECCCHH--------HHHHC-C-----HHHHHHHHHHHHCCEEEECCHHHHHHHHHH-------------------CC--
T ss_conf 9346423--------33212-2-----034899999986797997688999999984-------------------18--
Q ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 78996799538977888899836899887420110111169443211138877999979999813776789789999999
Q 003636 516 VFDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYG 595 (806)
Q Consensus 516 v~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~ 595 (806)
...++.+||||+|.+.|.|....... ..++.+|+ ++++++|+++||+.+.||++.+++++.
T Consensus 161 -~~~~~~vi~ngv~~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~ 221 (394)
T 3okp_A 161 -SHPTFEHLPSGVDVKRFTPATPEDKS----------------ATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMP 221 (394)
T ss_dssp -SSSEEEECCCCBCTTTSCCCCHHHHH----------------HHHHHTTC--CTTCCEEEEESCSCGGGCHHHHHHHHH
T ss_pred -CCCCEEEECCCCCHHHCCCCCCHHHH----------------HHHHHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf -99985883698588875887721468----------------99986499--857669999764413458879999999
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 81236998399999374799887535779999999999998499994899035567688378999997128299977998
Q 003636 596 KNSQLRELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (806)
Q Consensus 596 ~l~~~~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aaDifV~PS~~ 675 (806)
++.+..++++|+|+|+|+. .+.+.+++ .++.++|.|+| .++.+++..+++. +|++|.||.+
T Consensus 222 ~l~~~~~~~~l~i~G~g~~------------~~~l~~~~--~~~~~~v~~~g----~~~~~~~~~~~~~-ad~~v~ps~~ 282 (394)
T 3okp_A 222 QVIAARPDAQLLIVGSGRY------------ESTLRRLA--TDVSQNVKFLG----RLEYQDMINTLAA-ADIFAMPART 282 (394)
T ss_dssp HHHHHSTTCEEEEECCCTT------------HHHHHHHT--GGGGGGEEEEE----SCCHHHHHHHHHH-CSEEEECCCC
T ss_pred HHHHHCCCEEEEEECCCHH------------HHHHHHHH--HCCCCEEEECC----CCCHHHHHHHHHH-CCEEEECCCC
T ss_conf 9886189869999868647------------99999987--55457299907----8997899999986-8999945755
Q ss_pred -------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf -------9886899999992997998487671000024870999899999999999999987400899999999999999
Q 003636 676 -------EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLK 748 (806)
Q Consensus 676 -------E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~ 748 (806)
|+||++++|||+||+|||+++.||..|++.++ +|++++++|+++++++|.+++ +|++.++++++++++
T Consensus 283 ~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~----~~~~~~~~~~~~~~~ 357 (394)
T 3okp_A 283 RGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELL----DDPIRRAAMGAAGRA 357 (394)
T ss_dssp BGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCC-CCEEECCCCHHHHHHHHHHHH----HCHHHHHHHHHHHHH
T ss_conf 566656555673999999759979993899737787468-856728999999999999998----199999999999999
Q ss_pred HHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 9999399999999999999882
Q 003636 749 RIYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 749 ~v~e~ysw~~~a~~ll~ly~~~ 770 (806)
++.++|||+.+++++.++|+..
T Consensus 358 ~~~~~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 358 HVEAEWSWEIMGERLTNILQSE 379 (394)
T ss_dssp HHHHHTBHHHHHHHHHHHHHSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9987479999999999999972
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=1.00 E-value=1 Score=325.83 Aligned_cols=359 Identities=18% Similarity=0.256 Sum_probs=269.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 87443300037889999999999999889952002159955679998886564300105977669998348776632112
Q 003636 299 PDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSGTEHTHILRVPFRSEKGILRQ 378 (806)
Q Consensus 299 pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~i~g~~~v~I~rvp~~~~~~~~~~ 378 (806)
|..||.+.++. +|++.|+++||+|+ ++|...+.... ....++.+..++.....
T Consensus 24 p~~GG~~~~~~--------~la~~L~~~G~~V~----v~~~~~~~~~~----------~~~~~i~~~~~~~~~~~----- 76 (394)
T 2jjm_A 24 PSVGGSGVVGT--------ELGKQLAERGHEIH----FITSGLPFRLN----------KVYPNIYFHEVTVNQYS----- 76 (394)
T ss_dssp C--CHHHHHHH--------HHHHHHHHTTCEEE----EECSSCC--------------CCCTTEEEECCCCC--------
T ss_pred CCCCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCCC----------CCCCCEEEEECCCCCCC-----
T ss_conf 89898789999--------99999996898799----99688877620----------03786289852566654-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 35557752229999999999999882999529999179906-9999999973--99599995399755599970357532
Q 003636 379 WISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGN-LVASLLAYKM--GITQCTIAHALEKTKYPDSDIYWKKF 455 (806)
Q Consensus 379 ~isr~~i~pyl~~f~~~~~~~i~~~~~~kPDIIh~~~~~~~-lva~llar~l--gvp~v~t~H~l~~~k~~~s~~~~~~~ 455 (806)
.+...++...+...+.+.+... +||+||+|++... +.+.++++.. ++|++.+.|+.........
T Consensus 77 ---~~~~~~~~~~~~~~l~~~l~~~---~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~------- 143 (394)
T 2jjm_A 77 ---VFQYPPYDLALASKMAEVAQRE---NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSD------- 143 (394)
T ss_dssp ----CCSCCHHHHHHHHHHHHHHHH---TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTTC-------
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-------
T ss_conf ---0015652079999999999776---999999724337778899988862678777999715752125888-------
Q ss_pred HHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 10000000222889986308999924998884102444532444345554400010268878996799538977888899
Q 003636 456 DEKYHFSCQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMDIYFP 535 (806)
Q Consensus 456 ~~~y~~~~~~~~e~~a~~~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~v~~~Ki~VIpnGvD~~~f~P 535 (806)
..+ .......++.+|.|+++|....+...+. .+. ..++.+||||+|.+.|.+
T Consensus 144 -~~~-----~~~~~~~~~~ad~ii~~s~~~~~~~~~~-------------------~~~---~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 144 -PSL-----NNLIRFGIEQSDVVTAVSHSLINETHEL-------------------VKP---NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp -TTT-----HHHHHHHHHHSSEEEESCHHHHHHHHHH-------------------TCC---SSCEEECCCCCCTTTCCC
T ss_pred -HHH-----HHHHHHHHHHCCEEEECCHHHHHHHHHH-------------------HCC---CCCEEEECCCCCHHHCCC
T ss_conf -778-----8999999861998999799999999985-------------------287---656799558756876088
Q ss_pred CCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 83689988742011011116944321113887799997999981377678978999999981236998399999374799
Q 003636 536 YSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGKNSQLRELVNLVVVAGYIDV 615 (806)
Q Consensus 536 ~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~~l~~~~~~v~LvIVG~g~~~ 615 (806)
......+ +.+|+ ++++++|+++||+.+.||++.+++|+.++.+. .+++|+|+|+|+.
T Consensus 196 ~~~~~~~-------------------~~~~~--~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~- 252 (394)
T 2jjm_A 196 RDMTQLK-------------------KEYGI--SESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPE- 252 (394)
T ss_dssp CCCHHHH-------------------HHTTC--C---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTT-
T ss_pred CCHHHHH-------------------HHCCC--CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCHH-
T ss_conf 6348899-------------------87199--98880899950466535889999999999853-7978999889657-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEC
Q ss_conf 88753577999999999999849999489903556768837899999712829997799898868999999929979984
Q 003636 616 NKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT 695 (806)
Q Consensus 616 ~~~~d~ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aaDifV~PS~~E~fGltvlEAMa~GlPVIAT 695 (806)
.+++.++++++++.++|.|+|. .+++..+++. +|++|+||.+|+||++++|||+||+|||++
T Consensus 253 -----------~~~l~~~~~~~~l~~~v~~~g~------~~~~~~~~~~-adv~v~ps~~e~~~~~~~EAma~G~PvI~~ 314 (394)
T 2jjm_A 253 -----------FCTILQLVKNLHIEDRVLFLGK------QDNVAELLAM-SDLMLLLSEKESFGLVLLEAMACGVPCIGT 314 (394)
T ss_dssp -----------HHHHHHHHHTTTCGGGBCCCBS------CSCTHHHHHT-CSEEEECCSCCSCCHHHHHHHHTTCCEEEE
T ss_pred -----------HHHHHHHHHHCCCCCEEEEECC------HHHHHHHHHH-CCEEEECCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf -----------9999999997399875999276------6659999986-789996566678726899999649988981
Q ss_pred CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 876710000248709998999999999999999874008999999999999999999399999999999999882
Q 003636 696 CHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERYTWKIYSERLMTLAGVY 770 (806)
Q Consensus 696 ~~GG~~EiI~dg~~G~li~p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~ysw~~~a~~ll~ly~~~ 770 (806)
+.||..|++.++.+|++++++|+++++++|.+++ +|++.+++|++++++++.++|||+.+++++.++|+..
T Consensus 315 ~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 385 (394)
T 2jjm_A 315 RVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLL----KDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDV 385 (394)
T ss_dssp CCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 5898077763488539968999999999999997----4979999999999999987379999999999999999
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=1.00 E-value=1 Score=322.36 Aligned_cols=367 Identities=15% Similarity=0.197 Sum_probs=260.9
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEECCCCCCCCCCCCCCCEEECC
Q ss_conf 06999845645765555688874433000378899999999999998899520021599556799988865643001059
Q 003636 279 FNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKRQGLDISPKILIVTRLIPDAKGTTCNQRLERVSG 358 (806)
Q Consensus 279 ~rIviis~h~~~~~~~~lG~pdtGG~~vyvld~~raL~~eLa~~L~~~G~eV~~~ilIiT~~~p~~~g~~~~~~le~i~g 358 (806)
|||++++.+.. | .||.+.++. ++++.|+++||+|+ ++|.......
T Consensus 1 MkIl~i~~~~~---------~-~gG~~~~~~--------~l~~~L~~~G~~V~----v~~~~~~~~~------------- 45 (374)
T 2iw1_A 1 MIVAFCLYKYF---------P-FGGLQRDFM--------RIASTVAARGHHVR----VYTQSWEGDC------------- 45 (374)
T ss_dssp -CEEEECSEEC---------T-TCHHHHHHH--------HHHHHHHHTTCCEE----EEESEECSCC-------------
T ss_pred CEEEEEEEECC---------C-CCCHHHHHH--------HHHHHHHHCCCEEE----EEECCCCCCC-------------
T ss_conf 96999972158---------8-761635999--------99999996798489----9964898878-------------
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 77669998348776632112355577522299999999999998829995299991799069999999973995999953
Q 003636 359 TEHTHILRVPFRSEKGILRQWISRFDVWPYLETFTEDVGSEITAELQGFPDFIIGNYSDGNLVASLLAYKMGITQCTIAH 438 (806)
Q Consensus 359 ~~~v~I~rvp~~~~~~~~~~~isr~~i~pyl~~f~~~~~~~i~~~~~~kPDIIh~~~~~~~lva~llar~lgvp~v~t~H 438 (806)
..++.+.++|...... ......+...+.+.+.. .+||+||+|.+..+..+...+...+++.+.+.|
T Consensus 46 ~~~~~v~~~~~~~~~~-----------~~~~~~~~~~l~~~i~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (374)
T 2iw1_A 46 PKAFELIQVPVKSHTN-----------HGRNAEYYAWVQNHLKE---HPADRVVGFNKMPGLDVYFAADVCYAEKVAQEK 111 (374)
T ss_dssp CTTCEEEECCCCCSSH-----------HHHHHHHHHHHHHHHHH---SCCSEEEESSCCTTCSEEECCSCCHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCC-----------HHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCEEEECCCCCCCEEEEECC
T ss_conf 8774799971686443-----------01677899999999850---699889996677885213001565421333035
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH--HCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99755599970357532100000002228899863--0899992499888410244453244434555440001026887
Q 003636 439 ALEKTKYPDSDIYWKKFDEKYHFSCQFTADLIAMN--NADFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDV 516 (806)
Q Consensus 439 ~l~~~k~~~s~~~~~~~~~~y~~~~~~~~e~~a~~--~AD~IIt~S~~~~~~~k~~v~qy~~~~~f~~p~l~~~~~gi~v 516 (806)
+.. ......+.+.. ..+...+. .+|.|+++|....+... ...|++
T Consensus 112 ~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~d~ii~~s~~~~~~~~-------------------~~~~~~- 158 (374)
T 2iw1_A 112 GFL-----------YRLTSRYRHYA--AFERATFEQGKSTKLMMLTDKQIADFQ-------------------KHYQTE- 158 (374)
T ss_dssp CHH-----------HHTSHHHHHHH--HHHHHHHSTTCCCEEEESCHHHHHHHH-------------------HHHCCC-
T ss_pred CCH-----------HHHCHHHHHHH--HHHHHHHHCCCCCEEEECCHHHHHHHH-------------------HHHCCC-
T ss_conf 621-----------21047789999--999998642677579986989999999-------------------971897-
Q ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 89967995389778888998368998874201101111694432111388779999799998137767897899999998
Q 003636 517 FDPKFNIVSPGADMDIYFPYSEKQKRLTALHGSIEQLLFDPEQNDEHVGTLSDRSKPIVFSMARLDHVKNMTGLVECYGK 596 (806)
Q Consensus 517 ~~~Ki~VIpnGvD~~~f~P~~~~~~rl~~~~~~~~~~l~~~~~~~~~~Gil~~~~k~iIl~vGRL~~~Kgi~~LieA~~~ 596 (806)
..++.+||||+|.+.|.|......+ ...++.+|+ ++++++|+++||+.+.||++.+++++.+
T Consensus 159 -~~~~~vi~ngv~~~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~i~~~G~~~~~K~~~~li~a~~~ 220 (374)
T 2iw1_A 159 -PERFQILPPGIYPDRKYSEQIPNSR---------------EIYRQKNGI--KEQQNLLLQVGSDFGRKGVDRSIEALAS 220 (374)
T ss_dssp -GGGEEECCCCCCGGGSGGGSCTTHH---------------HHHHHHTTC--CTTCEEEEEECSCTTTTTHHHHHHHHHT
T ss_pred -HHHEEEECCCCCHHHCCCCCCHHHH---------------HHHHHHHCC--CCCCEEEEEECCCHHHCCHHHHHHHHHH
T ss_conf -1106885698587761764423579---------------999997289--9787299996464101388999999998
Q ss_pred HHCC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 1236-998399999374799887535779999999999998499994899035567688378999997128299977998
Q 003636 597 NSQL-RELVNLVVVAGYIDVNKSKDREEIAEIEKMHELMKTYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFY 675 (806)
Q Consensus 597 l~~~-~~~v~LvIVG~g~~~~~~~d~ee~~~~~~l~~li~~~gL~~~V~flG~~~~~~~~~el~~~la~aaDifV~PS~~ 675 (806)
+.+. .++++|+|+|+|+. +.+.++++++++.++|.|+|+ .+++..+++. +|++|+||.+
T Consensus 221 l~~~~~~~~~l~i~G~g~~-------------~~~~~~~~~~~~~~~v~~~g~------~~~~~~~~~~-ad~~v~ps~~ 280 (374)
T 2iw1_A 221 LPESLRHNTLLFVVGQDKP-------------RKFEALAEKLGVRSNVHFFSG------RNDVSELMAA-ADLLLHPAYQ 280 (374)
T ss_dssp SCHHHHHTEEEEEESSSCC-------------HHHHHHHHHHTCGGGEEEESC------CSCHHHHHHH-CSEEEECCSC
T ss_pred HHHCCCCCEEEEEECCCCH-------------HHHHHHHHHCCCCCCEEECCC------CCCHHHHHHH-CCEEEECCCC
T ss_conf 6760488669999708987-------------999999997398773797788------4038999984-6889835424
Q ss_pred CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 988689999999299799848767100002487099989-9999999999999987400899999999999999999939
Q 003636 676 EAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHID-PYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 754 (806)
Q Consensus 676 E~fGltvlEAMa~GlPVIAT~~GG~~EiI~dg~~G~li~-p~d~e~lA~aI~~~l~~l~~dp~~~~~ls~~ar~~v~e~y 754 (806)
|+||++++|||+||+|||+++.||..|++.++.+|++++ ++|+++++++|.+++ +|++.++++++++++++. +|
T Consensus 281 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~----~~~~~~~~~~~~~~~~~~-~~ 355 (374)
T 2iw1_A 281 EAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKAL----TQSPLRMAWAENARHYAD-TQ 355 (374)
T ss_dssp CSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHH----HCHHHHHHHHHHHHHHHH-HS
T ss_pred CCCCCHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHH-HH
T ss_conf 7755699999977998898269980444306983199679999899999999997----194999999999999998-75
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999882
Q 003636 755 TWKIYSERLMTLAGVY 770 (806)
Q Consensus 755 sw~~~a~~ll~ly~~~ 770 (806)
+|...++++.++++.+
T Consensus 356 ~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 DLYSLPEKAADIITGG 371 (374)
T ss_dssp CCSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 3899999999999986
Done!