BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003637
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/606 (35%), Positives = 357/606 (58%), Gaps = 47/606 (7%)
Query: 158 EGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLIN 217
+ KY+ IN ++ + + ++ +DV ++ +L +++ +L I + L D + ++
Sbjct: 21 QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 80
Query: 218 PLFEK---HVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFR--- 271
P +++ V VRI + +R + +DI K++++ G++++ + + I +A ++
Sbjct: 81 PTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIH 140
Query: 272 --CLVCGYYSD----PIVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQE 325
C+ + + P V++ P+ C K C L+ + + D Q +QE
Sbjct: 141 PDCMQEFEWPEDEEMPEVLEM-----PTICPK--CGKPGQFRLIPEKTKLIDWQKAVIQE 193
Query: 326 TPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRV-GPTQRTVKSLFKTY 384
P+++P G P + +++ D LVD+ +PGDRV+VTGI + ++ P +R +++F Y
Sbjct: 194 RPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGI---LDIKQDSPVKRGSRAVFDIY 250
Query: 385 IDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSL 444
+ I+ + K + DE+ E +++K+L++ P I + + S+
Sbjct: 251 MKVSSIEVSQK-----------------VLDEVIISEEDEKKIKDLAKDPWIRDRIISSI 293
Query: 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSP 504
AP+I+ ++K+ L LFGG K+ RGDI+IL++GDPGT+KSQ+LQ+I +++P
Sbjct: 294 APSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP 352
Query: 505 RGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLH 564
R +YT+GKGS+A GLTA V ++ TGE LE+GALVL+D GI IDE DKM + R +H
Sbjct: 353 RAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIH 412
Query: 565 EVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY 624
E MEQQTVSIAKAGI+A LNAR +V+A NP RY V +NI+LPPT+LSRFDLI+
Sbjct: 413 EAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF 472
Query: 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAE 684
++ D+ EQ DR LA +I+ +H S + ++D+ TL Y++YARK++ PK++ EA
Sbjct: 473 ILKDQPGEQ-DRELANYILDVH---SGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKN 528
Query: 685 ELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744
+T +VEMR++ + S I TPRQ+E+LIR+SEA A++ L V + D E A +
Sbjct: 529 LITDFFVEMRKKSSETPDSP--ILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586
Query: 745 LEVAMQ 750
+ + ++
Sbjct: 587 MRLFLE 592
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 186/412 (45%), Gaps = 80/412 (19%)
Query: 353 PGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPR 412
PG RVE+ GI R+ + +D L + K D I HP
Sbjct: 157 PGLRVEILGIVRSAT-----------------LDALEVHKKDP----------IPEVHP- 188
Query: 413 IEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLF---GGNALK 469
D +++++ +EL+ + + T R++AP + ++V K L QLF G N+ +
Sbjct: 189 -------DPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKNSER 239
Query: 470 LPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPET 529
L ++LL G P L + L+PRG+Y + + LTA + +D
Sbjct: 240 L----------HVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED--- 286
Query: 530 GETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589
L +GA VL+D GI +D + E R L E M++ TV++ GI +LNAR +V
Sbjct: 287 RGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAV 342
Query: 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFEN 649
LA NP G ++ P I I L LS FDLI + D R +
Sbjct: 343 LAAINP-GEQW-PSDPPIARIDLDQDFLSHFDLIAFL------GVDPRPGE--------- 385
Query: 650 PENSEQGVLDLATLTAYVSYA-RKHIHPKLSDEAAEELTRGYVEMRRRGNFP-GSSKKVI 707
PE + V L Y+ YA R+H P+L++EA + L Y R G +
Sbjct: 386 PEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTL 445
Query: 708 TATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL----LEVAMQQSATD 755
T RQ+ES+ RL++A AR+RLS+ VE DV+ A L LE AMQ D
Sbjct: 446 PVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGD 497
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 126/250 (50%), Gaps = 21/250 (8%)
Query: 158 EGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLIN 217
+ KY+ IN ++ + + ++ +DV ++ +L +++ +L I + L D + ++
Sbjct: 27 QNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLD 86
Query: 218 PLFEK---HVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFR--- 271
P +++ V VRI + +R + +DI K++++ G++++ + + I +A ++
Sbjct: 87 PTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIH 146
Query: 272 --CLVCGYYSD----PIVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQE 325
C+ + + P V++ P+ C K C L+ + + D Q +QE
Sbjct: 147 PDCMQEFEWPEDEEMPEVLEM-----PTICPK--CGKPGQFRLIPEKTKLIDWQKAVIQE 199
Query: 326 TPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYI 385
P+++P G P + +++ D LVD+ +PGDRV+VTGI + P +R +++F Y+
Sbjct: 200 RPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIK--QDSPVKRGSRAVFDIYM 257
Query: 386 DCLHIKKADK 395
I+ + K
Sbjct: 258 KVSSIEVSQK 267
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 125/267 (46%), Gaps = 31/267 (11%)
Query: 176 IDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINPLFEKHVQVRIYNLKSST 235
I+VD D+ +D DL + ++ P +V+ + +I L + + +R + +
Sbjct: 44 IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRKNV---DLNIRFSGISNVI 100
Query: 236 AMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPIVVDRGRINEPSTC 295
+R L I K V++ G+V + I P I +A+F C C + + I EPS C
Sbjct: 101 PLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHH-AVTQSTNMITEPSLC 159
Query: 296 LKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGD 355
EC + S L+ + F D Q ++LQE +++ G P +++++ D LVD PGD
Sbjct: 160 --SECGGR-SFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGD 216
Query: 356 RVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIED 415
V VTG R +VR T+R FK +I + + ++ ++ + E
Sbjct: 217 IVRVTGTLR--TVRDERTKR-----FKNFIYGNYTEFLEQEFEELQISEE---------- 259
Query: 416 EIQFDESKIQQLKELSRQPNIYETLTR 442
DE KI KEL+ PNIYE + R
Sbjct: 260 ----DEEKI---KELAGDPNIYEKIIR 279
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 34/168 (20%)
Query: 482 ILLVGDPGTSKSQLLQYIHKLS---------------PRGIYTSGKGSSAVGLTAYVTKD 526
+L+ G+ G K + + IHKLS PR I+ + L Y K
Sbjct: 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA-------ELFGY-EKG 214
Query: 527 PETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVME---------QQTVSIAKA 577
TG + G L+D G +DE ++S A++ L V+E ++ + +
Sbjct: 215 AFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEV-NV 273
Query: 578 GIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL 625
I+A+ N L RL VIE I +PP + D+I L
Sbjct: 274 RILAATNRNIKELVKEGKFREDLYYRLGVIE-IEIPPLRERKEDIIPL 320
>pdb|1G8P|A Chain A, Crystal Structure Of Bchi Subunit Of Magnesium Chelatase
pdb|2X31|G Chain G, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|H Chain H, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|I Chain I, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|J Chain J, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|K Chain K, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
pdb|2X31|L Chain L, Modelling Of The Complex Between Subunits Bchi And Bchd Of
Magnesium Chelatase Based On Single-Particle Cryo-Em
Reconstruction At 7.5 Ang
Length = 350
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 530 GETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589
GE E G L ++RG IDE + + + +L +V + + + G+ AR +
Sbjct: 131 GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVL 190
Query: 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQT 634
+ NP E L P LL RF L +L D +T
Sbjct: 191 VGSGNP------------EEGDLRPQLLDRFGLSVEVLSPRDVET 223
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 482 ILLVGDPGTSKSQLLQYIHKLSPR-GIYTSGKGSSAVGLTAYVT-----KDPETGETVLE 535
+L+ G+ GT K + + IH+ S R G + +S A K TG +
Sbjct: 155 VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRK 214
Query: 536 SGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595
G L L+D+G +DE ++ + ++ L V+E T S + G + V++ N
Sbjct: 215 KGKLELADQGTLFLDEVGELDQRVQAKLLRVLE--TGSFTRLGGNQKIEVDIRVISATNK 272
Query: 596 SGSR----------YNPRLSVIENIHLPPTLLSRFDLIYL 625
+ RLSV + I+LPP D+I L
Sbjct: 273 NLEEEIKKGNFREDLYYRLSVFQ-IYLPPLRERGKDVILL 311
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
Length = 267
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 20/161 (12%)
Query: 482 ILLVGDPGTSKSQLLQYIHKLSPRG--------IYTSGKGSSAVGLTAYVTKDPETGETV 533
+L+ G+ G K + + IHKLS R + + + L Y K TG
Sbjct: 43 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVS 101
Query: 534 LESGALVLSDRGICCIDEFDKMSESARSMLHEVME---------QQTVSIAKAGIIASLN 584
+ G L+D G +DE ++S A++ L V+E ++ + + I+A+ N
Sbjct: 102 SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEV-NVRILAATN 160
Query: 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL 625
L RL VIE I +PP + D+I L
Sbjct: 161 RNIKELVKEGKFREDLYYRLGVIE-IEIPPLRERKEDIIPL 200
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 502 LSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEF 552
L PRG + G L+ Y PETGE LES ++L+D+ I I E
Sbjct: 2 LVPRG--SEGMQFDRGYLSPYFINKPETGEVELESPFILLTDKKISNIREL 50
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 42/207 (20%)
Query: 481 NILLVGDPGTSKSQLLQYI--HKLSPRGIYTSGKGSSAVGLT--AYVTKDPETGETVLES 536
NILL+G G+ K+ + Q + H P I S A LT YV +D E T L
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAI------SDATSLTEAGYVGEDVENILTRLLQ 127
Query: 537 GA---LVLSDRGICCIDEFDKMSESA--RSMLHEV----MEQQTVSIAKAGIIASLNART 587
+ + + +GI IDE DK+S + RS+ +V ++Q + I + ++
Sbjct: 128 ASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN------ 181
Query: 588 SVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLI---LDKADEQTDRRLAKHIVS 644
P G R +P + I+ + D++++ D E +R ++++
Sbjct: 182 -----IPPKGGRKHPEGNFIQ--------IDTSDILFICAGAFDGLAEIIKKRTTQNVLG 228
Query: 645 LHFENPENSEQ-GVLDLATLTAYVSYA 670
E EQ +L L V+Y
Sbjct: 229 FTQEKMSKKEQEAILHLVQTHDLVTYG 255
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 502 LSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEF 552
L PRG + G L+ Y PETGE LES ++L D+ I I E
Sbjct: 2 LVPRG--SEGMQFDRGYLSPYFINKPETGEVELESPFILLVDKKISNIREL 50
>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
Length = 266
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 20/161 (12%)
Query: 482 ILLVGDPGTSKSQLLQYIHKLSPRG--------IYTSGKGSSAVGLTAYVTKDPETGETV 533
+L+ G+ G K + + IHKLS R + + + L Y K TG
Sbjct: 42 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGY-EKGAFTGAVS 100
Query: 534 LESGALVLSDRGICCIDEFDKMSESARSMLHEVME---------QQTVSIAKAGIIASLN 584
+ G L+D G +D ++S A++ L V+E ++ + + I+A+ N
Sbjct: 101 SKEGFFELADGGTLFLDAIGELSLEAQAKLLRVIESGKFYRLGGRKEIEV-NVRILAATN 159
Query: 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL 625
L RL VIE I +PP + D+I L
Sbjct: 160 RNIKELVKEGKFREDLYYRLGVIE-IEIPPLRERKEDIIPL 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,064,687
Number of Sequences: 62578
Number of extensions: 844525
Number of successful extensions: 2683
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2655
Number of HSP's gapped (non-prelim): 20
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)