Query 003637
Match_columns 806
No_of_seqs 436 out of 3435
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0478 DNA replication licens 100.0 8E-141 2E-145 1166.9 48.2 716 26-790 52-769 (804)
2 KOG0480 DNA replication licens 100.0 4E-124 8E-129 1027.4 50.2 613 128-755 23-653 (764)
3 PTZ00111 DNA replication licen 100.0 1E-119 3E-124 1055.4 63.5 670 113-792 73-851 (915)
4 COG1241 MCM2 Predicted ATPase 100.0 4E-120 9E-125 1039.4 58.7 611 158-792 16-639 (682)
5 KOG0481 DNA replication licens 100.0 3E-117 6E-122 948.7 47.6 603 126-755 24-649 (729)
6 KOG0482 DNA replication licens 100.0 5E-116 1E-120 938.1 33.8 593 125-751 8-644 (721)
7 KOG0477 DNA replication licens 100.0 8E-110 2E-114 907.8 35.8 599 120-753 150-765 (854)
8 KOG0479 DNA replication licens 100.0 4E-108 9E-113 888.7 47.7 587 128-751 11-648 (818)
9 smart00350 MCM minichromosome 100.0 3.1E-93 6.7E-98 821.4 52.1 504 234-749 2-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 1.2E-68 2.7E-73 585.2 7.6 325 423-750 1-331 (331)
11 COG2204 AtoC Response regulato 99.9 8.5E-25 1.8E-29 243.3 20.4 224 444-737 139-383 (464)
12 COG3829 RocR Transcriptional r 99.9 1.6E-24 3.4E-29 240.1 20.6 191 476-723 265-477 (560)
13 COG3604 FhlA Transcriptional r 99.9 9.4E-25 2E-29 238.5 17.5 219 447-738 224-465 (550)
14 TIGR02442 Cob-chelat-sub cobal 99.9 4.5E-24 9.8E-29 252.5 21.0 265 445-746 3-305 (633)
15 TIGR02030 BchI-ChlI magnesium 99.9 1.3E-23 2.9E-28 229.0 20.5 264 445-746 3-310 (337)
16 TIGR00368 Mg chelatase-related 99.9 2E-23 4.4E-28 238.5 21.1 260 447-744 193-498 (499)
17 TIGR02031 BchD-ChlD magnesium 99.9 3.2E-23 6.8E-28 242.7 22.3 254 452-746 1-259 (589)
18 PRK13407 bchI magnesium chelat 99.9 6.9E-23 1.5E-27 222.9 21.2 255 447-744 9-305 (334)
19 CHL00081 chlI Mg-protoporyphyr 99.9 7.9E-23 1.7E-27 222.7 18.6 257 447-745 18-322 (350)
20 PRK09862 putative ATP-dependen 99.9 4.8E-23 1E-27 234.2 17.1 262 447-745 192-492 (506)
21 COG0606 Predicted ATPase with 99.9 1.1E-21 2.4E-26 215.1 16.6 261 447-745 180-485 (490)
22 PF01078 Mg_chelatase: Magnesi 99.9 6.5E-22 1.4E-26 198.7 11.3 167 446-626 3-199 (206)
23 PRK13531 regulatory ATPase Rav 99.9 2.8E-20 6E-25 207.9 25.4 272 436-749 10-288 (498)
24 COG1239 ChlI Mg-chelatase subu 99.8 1.3E-19 2.8E-24 196.6 16.3 256 443-745 14-322 (423)
25 TIGR02974 phageshock_pspF psp 99.8 3.4E-19 7.5E-24 195.2 19.2 197 479-737 22-242 (329)
26 COG0714 MoxR-like ATPases [Gen 99.8 1E-18 2.2E-23 192.4 20.1 278 436-747 14-298 (329)
27 COG1221 PspF Transcriptional r 99.8 5.9E-19 1.3E-23 193.6 14.4 191 479-727 101-311 (403)
28 PRK05022 anaerobic nitric oxid 99.8 4.8E-18 1E-22 197.3 21.9 214 446-726 187-421 (509)
29 PRK15424 propionate catabolism 99.8 5.5E-18 1.2E-22 195.1 22.1 207 479-738 242-478 (538)
30 PRK13406 bchD magnesium chelat 99.8 4.3E-18 9.4E-23 197.8 20.7 238 451-746 8-251 (584)
31 COG3283 TyrR Transcriptional r 99.8 9.6E-19 2.1E-23 183.4 13.2 200 480-739 228-443 (511)
32 PRK11608 pspF phage shock prot 99.8 7.1E-18 1.5E-22 184.9 20.1 189 479-726 29-241 (326)
33 TIGR02329 propionate_PrpR prop 99.8 8E-18 1.7E-22 194.1 20.4 210 479-741 235-466 (526)
34 TIGR02902 spore_lonB ATP-depen 99.8 9.5E-18 2.1E-22 194.9 20.6 249 422-743 38-330 (531)
35 TIGR01817 nifA Nif-specific re 99.8 1.6E-17 3.4E-22 194.5 20.3 202 478-740 218-440 (534)
36 PRK11388 DNA-binding transcrip 99.8 8.9E-18 1.9E-22 200.7 17.6 226 445-742 324-568 (638)
37 TIGR00764 lon_rel lon-related 99.7 4.3E-17 9.3E-22 191.5 21.1 173 534-748 208-394 (608)
38 PRK10820 DNA-binding transcrip 99.7 3.1E-17 6.8E-22 190.6 19.2 197 480-738 228-447 (520)
39 TIGR02915 PEP_resp_reg putativ 99.7 8.1E-17 1.7E-21 184.7 20.3 199 479-739 162-383 (445)
40 TIGR02640 gas_vesic_GvpN gas v 99.7 4.1E-17 8.8E-22 173.7 15.8 209 481-742 23-254 (262)
41 COG3284 AcoR Transcriptional a 99.7 3.5E-17 7.5E-22 185.2 15.9 231 476-774 333-594 (606)
42 PRK10923 glnG nitrogen regulat 99.7 1.2E-16 2.6E-21 184.5 20.3 206 477-742 159-385 (469)
43 PRK15429 formate hydrogenlyase 99.7 1.6E-16 3.6E-21 191.1 21.6 211 447-726 377-610 (686)
44 TIGR01650 PD_CobS cobaltochela 99.7 2.8E-16 6.1E-21 168.9 20.0 205 481-724 66-283 (327)
45 PRK15115 response regulator Gl 99.7 2.5E-16 5.4E-21 180.6 20.5 202 478-741 156-380 (444)
46 PF07726 AAA_3: ATPase family 99.7 3.1E-17 6.7E-22 151.9 9.4 124 481-620 1-129 (131)
47 PF14551 MCM_N: MCM N-terminal 99.7 1.1E-17 2.3E-22 156.9 5.3 110 130-253 1-121 (121)
48 PRK11361 acetoacetate metaboli 99.7 5.5E-16 1.2E-20 178.4 19.8 203 480-742 167-390 (457)
49 PF05496 RuvB_N: Holliday junc 99.7 1.5E-16 3.3E-21 161.0 12.4 201 445-725 23-229 (233)
50 TIGR01818 ntrC nitrogen regula 99.7 1.9E-15 4.2E-20 174.2 20.4 204 479-742 157-381 (463)
51 PRK10365 transcriptional regul 99.7 2.6E-15 5.6E-20 172.0 19.2 201 479-741 162-385 (441)
52 CHL00181 cbbX CbbX; Provisiona 99.7 4.6E-16 1E-20 167.3 12.1 227 437-726 14-255 (287)
53 TIGR02880 cbbX_cfxQ probable R 99.7 4.6E-16 1E-20 167.3 12.0 226 443-729 19-257 (284)
54 COG2255 RuvB Holliday junction 99.6 2.6E-14 5.5E-19 147.2 19.1 215 447-745 27-251 (332)
55 TIGR02881 spore_V_K stage V sp 99.6 1.3E-14 2.9E-19 154.5 14.3 217 448-728 8-241 (261)
56 COG1222 RPT1 ATP-dependent 26S 99.6 6.7E-14 1.5E-18 148.4 17.7 192 481-747 187-394 (406)
57 PRK13765 ATP-dependent proteas 99.6 8.4E-14 1.8E-18 163.2 18.4 166 534-743 217-398 (637)
58 PF00158 Sigma54_activat: Sigm 99.5 1E-14 2.3E-19 144.5 8.6 111 480-596 23-144 (168)
59 PRK05342 clpX ATP-dependent pr 99.5 1E-13 2.3E-18 155.5 13.1 146 443-596 68-240 (412)
60 PRK00080 ruvB Holliday junctio 99.5 3.7E-13 8.1E-18 148.2 17.1 219 447-745 26-250 (328)
61 PF07728 AAA_5: AAA domain (dy 99.5 3.6E-14 7.8E-19 136.3 7.6 129 481-620 1-139 (139)
62 TIGR02903 spore_lon_C ATP-depe 99.5 5E-13 1.1E-17 157.9 18.4 230 443-744 151-429 (615)
63 TIGR00635 ruvB Holliday juncti 99.5 5.2E-13 1.1E-17 145.5 17.1 220 447-745 5-229 (305)
64 TIGR00382 clpX endopeptidase C 99.5 2.3E-13 5E-18 151.9 14.2 149 439-595 70-247 (413)
65 COG0466 Lon ATP-dependent Lon 99.5 1E-13 2.3E-18 158.1 11.3 201 440-691 317-538 (782)
66 PHA02244 ATPase-like protein 99.4 1.1E-12 2.4E-17 142.7 14.5 142 479-631 119-262 (383)
67 PRK10787 DNA-binding ATP-depen 99.4 8.2E-13 1.8E-17 159.3 14.4 241 439-742 315-579 (784)
68 KOG2004 Mitochondrial ATP-depe 99.4 6.6E-13 1.4E-17 150.6 10.5 200 443-691 408-626 (906)
69 COG4650 RtcR Sigma54-dependent 99.4 1.5E-12 3.2E-17 133.9 11.9 257 476-787 205-483 (531)
70 KOG0734 AAA+-type ATPase conta 99.4 9.6E-13 2.1E-17 144.7 10.3 213 422-743 314-539 (752)
71 COG2256 MGS1 ATPase related to 99.4 1.7E-12 3.8E-17 139.9 11.6 163 481-726 50-221 (436)
72 PRK14956 DNA polymerase III su 99.4 1.5E-11 3.2E-16 138.8 18.5 257 446-792 18-299 (484)
73 PRK03992 proteasome-activating 99.4 3.2E-12 7E-17 143.6 12.1 194 481-749 167-376 (389)
74 PRK11034 clpA ATP-dependent Cl 99.3 1.8E-11 4E-16 146.7 17.6 235 435-720 447-710 (758)
75 COG1223 Predicted ATPase (AAA+ 99.3 4.8E-12 1E-16 128.6 10.3 212 445-744 120-354 (368)
76 PRK07003 DNA polymerase III su 99.3 3.8E-11 8.2E-16 140.2 18.7 209 447-743 17-242 (830)
77 PRK14962 DNA polymerase III su 99.3 3.6E-11 7.8E-16 137.6 18.3 207 445-743 13-240 (472)
78 CHL00195 ycf46 Ycf46; Provisio 99.3 1.1E-11 2.4E-16 141.9 13.2 215 447-745 229-463 (489)
79 PRK14949 DNA polymerase III su 99.3 6.1E-11 1.3E-15 141.0 19.1 205 447-740 17-239 (944)
80 PLN03025 replication factor C 99.3 6.6E-11 1.4E-15 129.9 18.3 199 448-740 15-218 (319)
81 PRK13341 recombination factor 99.3 2.1E-11 4.6E-16 145.5 15.1 210 447-742 29-244 (725)
82 PTZ00454 26S protease regulato 99.3 2.4E-11 5.3E-16 136.2 13.3 192 480-746 180-387 (398)
83 PRK14960 DNA polymerase III su 99.3 1.4E-10 3.1E-15 134.2 19.7 204 447-742 16-240 (702)
84 TIGR00763 lon ATP-dependent pr 99.3 2.4E-11 5.2E-16 147.9 14.2 204 439-690 313-534 (775)
85 PRK13342 recombination factor 99.3 3.5E-11 7.6E-16 136.6 14.2 180 481-744 38-218 (413)
86 CHL00176 ftsH cell division pr 99.3 4.3E-11 9.3E-16 141.2 14.4 222 447-745 184-423 (638)
87 TIGR02639 ClpA ATP-dependent C 99.2 3.7E-11 8E-16 145.6 13.8 210 444-694 180-406 (731)
88 PRK14958 DNA polymerase III su 99.2 2.3E-10 4.9E-15 132.4 19.7 210 447-744 17-243 (509)
89 TIGR03346 chaperone_ClpB ATP-d 99.2 8.5E-11 1.8E-15 144.5 17.0 244 436-722 555-822 (852)
90 KOG0730 AAA+-type ATPase [Post 99.2 2.2E-11 4.7E-16 138.3 10.1 223 448-749 436-678 (693)
91 KOG0989 Replication factor C, 99.2 6.4E-10 1.4E-14 116.3 20.0 172 447-689 37-219 (346)
92 PRK12323 DNA polymerase III su 99.2 2.4E-10 5.2E-15 132.0 18.6 208 447-742 17-246 (700)
93 KOG0738 AAA+-type ATPase [Post 99.2 1.9E-11 4E-16 130.7 8.6 165 447-644 213-396 (491)
94 TIGR01242 26Sp45 26S proteasom 99.2 4.5E-11 9.8E-16 133.6 12.1 189 481-744 158-362 (364)
95 COG1224 TIP49 DNA helicase TIP 99.2 2.7E-10 5.8E-15 120.8 16.6 147 544-751 292-438 (450)
96 PRK14961 DNA polymerase III su 99.2 4.4E-10 9.5E-15 125.5 19.1 208 447-743 17-242 (363)
97 PRK08691 DNA polymerase III su 99.2 6E-10 1.3E-14 130.2 20.5 211 447-745 17-244 (709)
98 PRK14957 DNA polymerase III su 99.2 3.7E-10 8E-15 130.7 18.2 208 447-743 17-242 (546)
99 TIGR02639 ClpA ATP-dependent C 99.2 1.1E-10 2.4E-15 141.4 14.6 239 436-720 444-706 (731)
100 PRK07994 DNA polymerase III su 99.2 8E-10 1.7E-14 129.7 21.1 204 447-742 17-241 (647)
101 TIGR01241 FtsH_fam ATP-depende 99.2 8.1E-11 1.8E-15 136.7 12.7 188 480-745 89-295 (495)
102 KOG0737 AAA+-type ATPase [Post 99.2 1.1E-11 2.4E-16 132.5 4.6 172 447-645 93-276 (386)
103 COG1219 ClpX ATP-dependent pro 99.2 6.7E-11 1.5E-15 123.6 10.1 155 439-601 54-237 (408)
104 KOG0736 Peroxisome assembly fa 99.2 1.7E-10 3.6E-15 132.3 14.0 177 448-682 674-883 (953)
105 TIGR03345 VI_ClpV1 type VI sec 99.2 1.4E-10 3.1E-15 141.6 14.0 215 440-695 181-412 (852)
106 PRK14959 DNA polymerase III su 99.2 1.1E-09 2.3E-14 127.6 20.4 207 447-742 17-241 (624)
107 PTZ00361 26 proteosome regulat 99.2 1.4E-10 3.1E-15 131.0 12.5 192 480-747 218-426 (438)
108 PF07724 AAA_2: AAA domain (Cd 99.2 1.5E-11 3.4E-16 122.3 4.2 111 480-596 4-130 (171)
109 PRK10865 protein disaggregatio 99.2 3E-10 6.6E-15 139.2 16.1 239 436-721 558-824 (857)
110 PRK14964 DNA polymerase III su 99.2 6.4E-10 1.4E-14 127.0 17.4 204 447-742 14-238 (491)
111 PRK08451 DNA polymerase III su 99.2 6.3E-10 1.4E-14 128.1 17.2 203 447-742 15-239 (535)
112 PRK14965 DNA polymerase III su 99.1 2.5E-09 5.4E-14 125.9 21.8 204 447-741 17-240 (576)
113 PRK14969 DNA polymerase III su 99.1 3.1E-09 6.6E-14 123.8 22.2 208 447-743 17-242 (527)
114 PRK14952 DNA polymerase III su 99.1 1.5E-09 3.3E-14 126.7 19.6 209 445-742 12-241 (584)
115 KOG0991 Replication factor C, 99.1 2.7E-10 5.8E-15 114.3 11.4 174 443-688 24-202 (333)
116 PRK06645 DNA polymerase III su 99.1 1.4E-09 3E-14 125.2 18.2 211 447-742 22-253 (507)
117 PRK05201 hslU ATP-dependent pr 99.1 5.8E-10 1.3E-14 123.3 14.2 149 543-729 249-410 (443)
118 PRK07764 DNA polymerase III su 99.1 1.4E-09 3.1E-14 131.5 18.8 206 447-742 16-243 (824)
119 PRK05896 DNA polymerase III su 99.1 1.6E-09 3.4E-14 125.7 18.2 211 444-742 14-241 (605)
120 CHL00095 clpC Clp protease ATP 99.1 1.6E-09 3.4E-14 133.0 18.9 242 436-720 499-776 (821)
121 CHL00095 clpC Clp protease ATP 99.1 7.4E-10 1.6E-14 135.9 15.5 209 446-695 179-403 (821)
122 TIGR00390 hslU ATP-dependent p 99.1 8.5E-10 1.9E-14 122.0 14.3 150 542-729 246-408 (441)
123 PRK11034 clpA ATP-dependent Cl 99.1 2.8E-10 6E-15 136.7 11.3 203 447-694 187-410 (758)
124 PRK14951 DNA polymerase III su 99.1 2E-09 4.4E-14 126.1 18.1 209 447-743 17-247 (618)
125 PRK12402 replication factor C 99.1 2.4E-09 5.3E-14 118.1 17.9 205 447-743 16-247 (337)
126 TIGR03345 VI_ClpV1 type VI sec 99.1 1.3E-09 2.9E-14 133.2 17.0 248 436-732 556-839 (852)
127 PRK00440 rfc replication facto 99.1 1.6E-09 3.5E-14 118.6 15.8 198 448-742 19-223 (319)
128 PRK14963 DNA polymerase III su 99.1 4.1E-09 9E-14 121.7 19.7 202 447-742 15-237 (504)
129 TIGR01243 CDC48 AAA family ATP 99.1 3.8E-10 8.2E-15 137.2 11.2 163 447-642 454-634 (733)
130 PRK05563 DNA polymerase III su 99.1 5.9E-09 1.3E-13 122.2 20.7 208 447-742 17-241 (559)
131 PRK14955 DNA polymerase III su 99.1 2.7E-09 5.9E-14 120.5 17.0 212 447-742 17-254 (397)
132 COG0542 clpA ATP-binding subun 99.1 1.7E-09 3.7E-14 127.5 15.6 238 435-720 480-749 (786)
133 TIGR03420 DnaA_homol_Hda DnaA 99.1 1.1E-09 2.5E-14 113.8 12.7 182 481-742 40-225 (226)
134 KOG2028 ATPase related to the 99.0 7.5E-10 1.6E-14 117.4 10.6 149 447-643 139-294 (554)
135 PRK08903 DnaA regulatory inact 99.0 1.9E-09 4.1E-14 112.4 12.8 180 481-743 44-224 (227)
136 PRK06647 DNA polymerase III su 99.0 8E-09 1.7E-13 120.8 18.6 208 447-742 17-241 (563)
137 PRK10865 protein disaggregatio 99.0 1.5E-09 3.3E-14 133.0 13.3 208 446-694 178-402 (857)
138 PRK07133 DNA polymerase III su 99.0 1.2E-08 2.6E-13 120.6 19.8 208 447-742 19-240 (725)
139 TIGR03689 pup_AAA proteasome A 99.0 2.7E-09 6E-14 122.3 14.0 217 481-743 218-476 (512)
140 CHL00206 ycf2 Ycf2; Provisiona 99.0 1.2E-09 2.7E-14 136.2 11.8 194 479-745 1630-1877(2281)
141 KOG0731 AAA+-type ATPase conta 99.0 2.5E-09 5.4E-14 125.2 13.3 216 422-745 321-553 (774)
142 PTZ00112 origin recognition co 99.0 1.2E-08 2.6E-13 120.0 17.9 231 446-749 755-1010(1164)
143 COG0465 HflB ATP-dependent Zn 99.0 1.6E-09 3.5E-14 124.8 10.6 126 481-639 185-329 (596)
144 PRK09111 DNA polymerase III su 99.0 3.1E-08 6.7E-13 116.4 21.4 209 447-743 25-255 (598)
145 COG0464 SpoVK ATPases of the A 99.0 2.7E-09 5.8E-14 124.3 12.3 186 478-744 275-482 (494)
146 PRK14950 DNA polymerase III su 99.0 1.6E-08 3.5E-13 119.6 19.0 210 445-742 15-242 (585)
147 PRK06305 DNA polymerase III su 99.0 1.5E-08 3.2E-13 115.9 17.8 174 447-689 18-211 (451)
148 KOG1942 DNA helicase, TBP-inte 99.0 1E-08 2.2E-13 106.1 14.5 146 544-749 297-442 (456)
149 smart00763 AAA_PrkA PrkA AAA d 99.0 4.7E-09 1E-13 114.7 12.7 99 536-644 229-328 (361)
150 TIGR03346 chaperone_ClpB ATP-d 99.0 2E-09 4.3E-14 132.5 10.7 208 447-695 174-398 (852)
151 PRK14970 DNA polymerase III su 98.9 2.5E-08 5.4E-13 111.7 18.5 206 447-742 18-230 (367)
152 TIGR02397 dnaX_nterm DNA polym 98.9 1.1E-08 2.4E-13 113.9 15.4 207 447-742 15-239 (355)
153 KOG0733 Nuclear AAA ATPase (VC 98.9 2.9E-09 6.2E-14 119.6 9.3 156 448-644 513-693 (802)
154 PRK10733 hflB ATP-dependent me 98.9 9.4E-09 2E-13 122.7 13.1 184 481-745 187-392 (644)
155 PRK14953 DNA polymerase III su 98.9 5.1E-08 1.1E-12 112.3 18.5 208 447-742 17-241 (486)
156 PRK14948 DNA polymerase III su 98.9 4.3E-08 9.2E-13 116.0 18.2 175 447-689 17-211 (620)
157 PRK14954 DNA polymerase III su 98.9 3.4E-08 7.5E-13 116.2 17.2 209 447-742 17-254 (620)
158 KOG0652 26S proteasome regulat 98.9 4.6E-09 9.9E-14 107.0 8.4 195 475-746 201-413 (424)
159 KOG0733 Nuclear AAA ATPase (VC 98.9 6.6E-09 1.4E-13 116.8 10.0 133 481-644 225-375 (802)
160 PHA02544 44 clamp loader, smal 98.9 3.5E-08 7.6E-13 108.1 15.7 149 447-644 22-174 (316)
161 COG1220 HslU ATP-dependent pro 98.9 3.5E-09 7.6E-14 111.7 7.0 140 543-720 250-402 (444)
162 PRK14971 DNA polymerase III su 98.9 5.6E-08 1.2E-12 115.0 17.7 173 447-689 18-211 (614)
163 PRK00411 cdc6 cell division co 98.8 5E-08 1.1E-12 110.3 16.6 232 445-749 29-286 (394)
164 PRK11331 5-methylcytosine-spec 98.8 2.6E-08 5.6E-13 111.7 13.3 154 447-625 176-355 (459)
165 cd00009 AAA The AAA+ (ATPases 98.8 6.1E-09 1.3E-13 98.9 7.1 140 450-623 2-146 (151)
166 PF12775 AAA_7: P-loop contain 98.8 1.2E-08 2.6E-13 109.1 9.9 208 481-722 35-252 (272)
167 TIGR02928 orc1/cdc6 family rep 98.8 1.1E-07 2.4E-12 106.3 17.6 237 446-749 15-278 (365)
168 PLN00020 ribulose bisphosphate 98.8 8.6E-09 1.9E-13 111.7 7.9 134 480-644 149-312 (413)
169 PF00004 AAA: ATPase family as 98.8 2.1E-09 4.5E-14 101.4 2.0 112 482-624 1-128 (132)
170 PRK06620 hypothetical protein; 98.8 1.1E-07 2.3E-12 98.4 14.8 166 481-742 46-213 (214)
171 KOG0727 26S proteasome regulat 98.8 1.9E-08 4.2E-13 102.1 8.9 100 481-596 191-304 (408)
172 KOG0745 Putative ATP-dependent 98.8 5.1E-08 1.1E-12 106.0 12.4 108 480-595 227-357 (564)
173 PRK04195 replication factor C 98.8 5.8E-08 1.3E-12 112.6 13.8 105 448-569 16-128 (482)
174 COG2812 DnaX DNA polymerase II 98.8 1.1E-07 2.5E-12 108.5 15.6 218 440-746 10-245 (515)
175 PRK06893 DNA replication initi 98.7 1E-07 2.2E-12 99.7 12.7 180 481-743 41-228 (229)
176 PRK08084 DNA replication initi 98.7 6.5E-08 1.4E-12 101.5 11.1 183 481-743 47-234 (235)
177 TIGR01243 CDC48 AAA family ATP 98.7 5.4E-08 1.2E-12 118.5 11.2 128 480-641 213-357 (733)
178 KOG0728 26S proteasome regulat 98.7 1.1E-07 2.4E-12 96.6 11.2 100 481-596 183-296 (404)
179 KOG0740 AAA+-type ATPase [Post 98.7 2.5E-08 5.5E-13 110.6 6.7 171 447-646 154-336 (428)
180 COG5271 MDN1 AAA ATPase contai 98.7 2.8E-07 6.1E-12 111.7 15.6 130 481-624 1545-1686(4600)
181 KOG0742 AAA+-type ATPase [Post 98.7 2.5E-07 5.3E-12 99.9 13.5 137 481-651 386-536 (630)
182 KOG0739 AAA+-type ATPase [Post 98.7 1.6E-08 3.6E-13 104.9 4.1 133 448-623 135-293 (439)
183 COG0542 clpA ATP-binding subun 98.6 2.6E-07 5.6E-12 109.4 14.1 211 444-696 169-396 (786)
184 PRK12422 chromosomal replicati 98.6 1.2E-07 2.6E-12 108.2 10.7 189 481-744 143-342 (445)
185 PRK08727 hypothetical protein; 98.6 5.1E-07 1.1E-11 94.7 14.3 182 481-743 43-229 (233)
186 PF14532 Sigma54_activ_2: Sigm 98.6 3.9E-08 8.5E-13 94.4 5.4 89 480-596 22-110 (138)
187 COG1067 LonB Predicted ATP-dep 98.6 5.6E-07 1.2E-11 105.8 16.0 223 481-744 133-398 (647)
188 TIGR02688 conserved hypothetic 98.6 1.3E-06 2.7E-11 97.0 16.0 99 479-594 209-311 (449)
189 TIGR00362 DnaA chromosomal rep 98.6 1.9E-07 4.1E-12 106.1 9.9 191 481-745 138-337 (405)
190 PRK04132 replication factor C 98.5 7.9E-07 1.7E-11 107.4 15.1 180 480-741 565-750 (846)
191 PRK07940 DNA polymerase III su 98.5 3.3E-07 7.1E-12 102.9 10.5 158 445-633 4-179 (394)
192 PRK09087 hypothetical protein; 98.5 1.3E-06 2.8E-11 91.1 13.8 176 481-745 46-222 (226)
193 PRK00149 dnaA chromosomal repl 98.5 3.5E-07 7.5E-12 105.3 10.4 191 481-745 150-349 (450)
194 COG1474 CDC6 Cdc6-related prot 98.5 2.4E-06 5.2E-11 95.1 14.9 204 481-748 44-268 (366)
195 KOG0729 26S proteasome regulat 98.4 1.6E-06 3.5E-11 88.9 11.6 100 481-596 213-326 (435)
196 KOG0735 AAA+-type ATPase [Post 98.4 5.5E-07 1.2E-11 103.2 8.6 158 448-644 669-849 (952)
197 PRK14088 dnaA chromosomal repl 98.4 7.6E-07 1.6E-11 101.9 9.7 191 481-744 132-331 (440)
198 PF06068 TIP49: TIP49 C-termin 98.4 1.2E-06 2.5E-11 95.2 10.5 117 544-721 279-395 (398)
199 PRK14086 dnaA chromosomal repl 98.4 9.1E-07 2E-11 103.1 10.3 189 481-744 316-514 (617)
200 PRK14087 dnaA chromosomal repl 98.4 9.7E-07 2.1E-11 101.1 10.4 195 481-744 143-347 (450)
201 PRK09112 DNA polymerase III su 98.4 5.6E-06 1.2E-10 91.8 15.7 112 447-569 24-167 (351)
202 KOG0730 AAA+-type ATPase [Post 98.4 2.7E-06 5.9E-11 97.5 13.4 190 476-747 215-418 (693)
203 TIGR03015 pepcterm_ATPase puta 98.4 3.8E-06 8.3E-11 89.7 14.0 75 655-746 189-267 (269)
204 PF13337 Lon_2: Putative ATP-d 98.4 3.6E-05 7.9E-10 86.1 21.5 138 431-596 169-311 (457)
205 PRK05642 DNA replication initi 98.4 4.9E-06 1.1E-10 87.3 13.7 178 481-742 47-232 (234)
206 KOG0726 26S proteasome regulat 98.4 4.4E-07 9.5E-12 94.2 5.5 192 481-748 221-429 (440)
207 TIGR00678 holB DNA polymerase 98.3 3.8E-06 8.2E-11 85.0 11.6 146 481-689 16-180 (188)
208 COG5271 MDN1 AAA ATPase contai 98.3 5.1E-06 1.1E-10 101.4 13.8 175 478-696 887-1067(4600)
209 PF12774 AAA_6: Hydrolytic ATP 98.3 3.3E-06 7.2E-11 88.1 10.5 185 481-726 34-228 (231)
210 PRK05564 DNA polymerase III su 98.3 6.6E-06 1.4E-10 90.2 13.2 109 446-569 4-119 (313)
211 KOG1051 Chaperone HSP104 and r 98.3 2.3E-06 4.9E-11 102.9 10.1 150 436-596 552-711 (898)
212 KOG0651 26S proteasome regulat 98.3 2E-06 4.4E-11 90.4 8.1 99 480-596 167-281 (388)
213 PF05673 DUF815: Protein of un 98.2 9.5E-06 2.1E-10 84.1 12.3 165 448-644 29-208 (249)
214 KOG0743 AAA+-type ATPase [Post 98.2 2.3E-06 5.1E-11 94.6 8.4 128 481-644 237-384 (457)
215 PF00308 Bac_DnaA: Bacterial d 98.2 3.6E-06 7.8E-11 87.4 7.2 174 481-727 36-218 (219)
216 PHA01747 putative ATP-dependen 98.2 1.5E-05 3.3E-10 86.2 11.9 143 437-596 150-301 (425)
217 KOG0744 AAA+-type ATPase [Post 98.2 8E-06 1.7E-10 86.4 9.5 136 476-644 174-341 (423)
218 smart00382 AAA ATPases associa 98.1 1.7E-06 3.8E-11 81.0 3.9 106 480-595 3-125 (148)
219 COG0470 HolB ATPase involved i 98.1 3.7E-06 8E-11 92.2 6.3 139 448-623 3-163 (325)
220 PRK07471 DNA polymerase III su 98.1 1.4E-05 3E-10 89.2 10.2 46 447-503 20-65 (365)
221 KOG0990 Replication factor C, 98.1 6.1E-05 1.3E-09 80.0 14.2 88 481-571 64-159 (360)
222 PRK08058 DNA polymerase III su 98.1 1.2E-05 2.6E-10 88.7 9.3 137 447-623 6-164 (329)
223 KOG2680 DNA helicase TIP49, TB 98.1 6.4E-05 1.4E-09 78.8 13.9 178 481-747 254-431 (454)
224 TIGR02653 Lon_rel_chp conserve 98.1 0.00028 6.1E-09 82.2 20.4 134 433-594 179-317 (675)
225 PF13177 DNA_pol3_delta2: DNA 98.0 2.3E-05 5.1E-10 77.4 10.0 136 450-623 1-156 (162)
226 PRK07399 DNA polymerase III su 98.0 2.7E-05 5.8E-10 85.2 10.5 139 446-623 4-177 (314)
227 PRK15455 PrkA family serine pr 98.0 4.7E-05 1E-09 87.5 12.5 99 537-645 249-348 (644)
228 PRK05707 DNA polymerase III su 98.0 0.00014 3.1E-09 80.0 15.1 116 481-623 24-160 (328)
229 COG0593 DnaA ATPase involved i 97.7 0.00019 4.1E-09 80.2 11.5 192 481-748 115-316 (408)
230 COG2607 Predicted ATPase (AAA+ 97.7 0.00031 6.7E-09 72.0 11.8 114 448-596 62-184 (287)
231 TIGR00602 rad24 checkpoint pro 97.7 0.00022 4.8E-09 84.4 11.8 52 447-505 85-136 (637)
232 KOG0736 Peroxisome assembly fa 97.7 0.00058 1.3E-08 79.8 14.1 147 471-646 423-579 (953)
233 KOG0741 AAA+-type ATPase [Post 97.7 3.4E-05 7.4E-10 86.2 4.1 24 481-504 258-281 (744)
234 KOG2545 Conserved membrane pro 97.6 0.0049 1.1E-07 67.4 18.4 242 450-745 281-535 (543)
235 KOG0732 AAA+-type ATPase conta 97.5 0.00058 1.2E-08 83.3 11.9 97 481-597 301-417 (1080)
236 PRK06871 DNA polymerase III su 97.5 0.0023 5E-08 70.2 15.5 115 480-623 25-161 (325)
237 PRK12377 putative replication 97.5 6.3E-05 1.4E-09 79.4 2.9 100 480-596 102-206 (248)
238 PF08298 AAA_PrkA: PrkA AAA do 97.5 0.00021 4.5E-09 77.9 6.9 98 537-644 227-325 (358)
239 PF05621 TniB: Bacterial TniB 97.4 0.0017 3.7E-08 69.7 13.1 60 439-506 27-88 (302)
240 KOG2035 Replication factor C, 97.4 0.011 2.3E-07 62.1 18.1 72 545-644 129-200 (351)
241 PRK08181 transposase; Validate 97.4 4.1E-05 8.9E-10 81.7 0.4 101 481-601 108-214 (269)
242 KOG1969 DNA replication checkp 97.4 0.00089 1.9E-08 78.0 10.8 79 481-568 328-412 (877)
243 PRK08769 DNA polymerase III su 97.3 0.00087 1.9E-08 73.3 9.8 55 543-623 113-167 (319)
244 PRK06526 transposase; Provisio 97.3 6.9E-05 1.5E-09 79.5 1.2 104 477-599 96-204 (254)
245 PRK08116 hypothetical protein; 97.3 0.00014 3.1E-09 77.8 3.6 100 480-596 115-221 (268)
246 PRK07993 DNA polymerase III su 97.3 0.0013 2.7E-08 72.8 10.8 114 480-623 25-162 (334)
247 KOG1808 AAA ATPase containing 97.3 0.00048 1E-08 88.3 8.1 135 480-623 441-581 (1856)
248 PRK06964 DNA polymerase III su 97.3 0.0007 1.5E-08 74.7 8.5 55 543-623 132-186 (342)
249 PF00910 RNA_helicase: RNA hel 97.3 0.0004 8.7E-09 63.6 5.5 99 482-594 1-106 (107)
250 KOG1514 Origin recognition com 97.2 0.0061 1.3E-07 71.1 15.6 239 441-753 391-663 (767)
251 PF01695 IstB_IS21: IstB-like 97.2 5E-05 1.1E-09 76.3 -1.7 119 480-620 48-171 (178)
252 PRK08699 DNA polymerase III su 97.0 0.0033 7.1E-08 69.2 10.2 29 542-570 112-140 (325)
253 PF03266 NTPase_1: NTPase; In 96.9 0.00075 1.6E-08 67.1 4.0 90 481-570 1-125 (168)
254 PF13148 DUF3987: Protein of u 96.9 0.0056 1.2E-07 68.9 11.2 190 544-753 150-368 (378)
255 COG5245 DYN1 Dynein, heavy cha 96.9 0.0074 1.6E-07 74.8 12.4 148 543-726 1563-1717(3164)
256 PRK09183 transposase/IS protei 96.9 0.00044 9.6E-09 73.7 2.0 102 479-600 102-210 (259)
257 PHA02774 E1; Provisional 96.9 0.0047 1E-07 71.5 10.1 97 481-596 436-533 (613)
258 PF13654 AAA_32: AAA domain; P 96.8 0.0074 1.6E-07 70.2 11.7 170 532-744 321-505 (509)
259 KOG0735 AAA+-type ATPase [Post 96.8 0.0058 1.3E-07 71.2 10.4 212 480-759 432-663 (952)
260 PRK06090 DNA polymerase III su 96.8 0.0035 7.6E-08 68.6 8.3 117 480-623 26-162 (319)
261 PRK07952 DNA replication prote 96.8 0.00071 1.5E-08 71.3 2.8 96 481-596 101-205 (244)
262 KOG2170 ATPase of the AAA+ sup 96.8 0.0013 2.8E-08 69.6 4.2 124 437-569 73-204 (344)
263 PF05272 VirE: Virulence-assoc 96.7 0.0024 5.3E-08 65.1 6.0 98 479-597 52-151 (198)
264 PRK06835 DNA replication prote 96.7 0.00082 1.8E-08 73.9 2.6 98 481-596 185-289 (329)
265 COG1484 DnaC DNA replication p 96.7 0.00053 1.1E-08 72.8 0.8 102 481-600 107-213 (254)
266 COG3854 SpoIIIAA ncharacterize 96.7 0.0022 4.7E-08 65.5 5.0 28 478-505 136-163 (308)
267 PF13401 AAA_22: AAA domain; P 96.7 0.00053 1.1E-08 64.5 0.5 25 480-504 5-29 (131)
268 COG1618 Predicted nucleotide k 96.5 0.0057 1.2E-07 59.3 6.5 27 479-505 5-31 (179)
269 PRK06921 hypothetical protein; 96.5 0.001 2.2E-08 71.2 1.2 97 481-597 119-226 (266)
270 TIGR01613 primase_Cterm phage/ 96.3 0.049 1.1E-06 59.5 13.4 140 481-642 78-218 (304)
271 PRK08939 primosomal protein Dn 96.3 0.0021 4.6E-08 70.1 2.2 25 481-505 158-182 (306)
272 PRK05917 DNA polymerase III su 96.2 0.0071 1.5E-07 65.1 5.8 116 480-624 20-150 (290)
273 PF06309 Torsin: Torsin; Inte 96.1 0.0065 1.4E-07 56.9 4.3 64 437-505 16-79 (127)
274 PF13335 Mg_chelatase_2: Magne 96.1 0.063 1.4E-06 48.2 10.5 69 653-744 27-95 (96)
275 PHA02624 large T antigen; Prov 96.0 0.0081 1.8E-07 69.9 5.5 109 481-623 433-556 (647)
276 KOG1051 Chaperone HSP104 and r 95.9 0.012 2.5E-07 71.7 6.4 161 444-642 185-362 (898)
277 PF13173 AAA_14: AAA domain 95.9 0.01 2.2E-07 56.1 4.7 80 481-569 4-86 (128)
278 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.0071 1.5E-07 67.5 3.7 101 480-597 63-169 (362)
279 PRK07132 DNA polymerase III su 95.8 0.026 5.7E-07 61.3 8.0 111 481-623 20-144 (299)
280 PF05729 NACHT: NACHT domain 95.7 0.0099 2.1E-07 57.8 4.0 25 481-505 2-26 (166)
281 cd01120 RecA-like_NTPases RecA 95.6 0.018 4E-07 55.5 5.5 24 481-504 1-24 (165)
282 PF03215 Rad17: Rad17 cell cyc 95.4 0.047 1E-06 63.7 8.6 89 481-569 47-158 (519)
283 PF13191 AAA_16: AAA ATPase do 95.3 0.016 3.5E-07 57.6 4.0 47 448-503 2-48 (185)
284 COG4930 Predicted ATP-dependen 95.2 0.6 1.3E-05 51.5 15.6 133 434-594 189-326 (683)
285 PF13671 AAA_33: AAA domain; P 95.2 0.016 3.4E-07 55.3 3.3 23 482-504 2-24 (143)
286 PF09848 DUF2075: Uncharacteri 95.1 0.013 2.7E-07 65.5 2.8 93 481-573 3-121 (352)
287 PRK05818 DNA polymerase III su 95.1 0.043 9.3E-07 58.0 6.5 118 480-623 8-142 (261)
288 PF13207 AAA_17: AAA domain; P 95.1 0.016 3.5E-07 53.6 2.8 22 482-503 2-23 (121)
289 PF00519 PPV_E1_C: Papillomavi 94.9 0.061 1.3E-06 59.4 7.2 94 481-596 264-361 (432)
290 PRK13947 shikimate kinase; Pro 94.8 0.027 5.9E-07 55.7 4.0 28 481-508 3-30 (171)
291 COG4178 ABC-type uncharacteriz 94.8 0.032 6.9E-07 65.4 4.9 31 475-505 415-445 (604)
292 PF01443 Viral_helicase1: Vira 94.8 0.065 1.4E-06 55.7 6.9 81 482-565 1-84 (234)
293 PHA00729 NTP-binding motif con 94.8 0.021 4.6E-07 59.2 3.0 23 481-503 19-41 (226)
294 PRK14532 adenylate kinase; Pro 94.7 0.031 6.8E-07 56.3 4.0 26 481-506 2-27 (188)
295 PRK04296 thymidine kinase; Pro 94.6 0.086 1.9E-06 53.5 7.1 23 481-503 4-26 (190)
296 KOG3347 Predicted nucleotide k 94.6 0.027 5.9E-07 54.0 3.1 26 478-503 6-31 (176)
297 TIGR01447 recD exodeoxyribonuc 94.6 0.055 1.2E-06 64.3 6.4 25 545-569 261-285 (586)
298 PF13604 AAA_30: AAA domain; P 94.6 0.012 2.6E-07 60.1 0.7 88 481-569 20-119 (196)
299 cd00464 SK Shikimate kinase (S 94.5 0.036 7.9E-07 53.5 3.8 26 481-506 1-26 (154)
300 PRK07276 DNA polymerase III su 94.4 0.11 2.4E-06 56.2 7.7 57 542-624 103-159 (290)
301 PRK00131 aroK shikimate kinase 94.3 0.041 9E-07 54.2 3.9 27 480-506 5-31 (175)
302 PRK08118 topology modulation p 94.3 0.04 8.7E-07 54.7 3.8 25 481-505 3-27 (167)
303 KOG2227 Pre-initiation complex 94.3 0.27 5.9E-06 55.4 10.5 101 481-595 177-298 (529)
304 cd01131 PilT Pilus retraction 94.3 0.13 2.7E-06 52.6 7.5 24 481-504 3-26 (198)
305 PRK00625 shikimate kinase; Pro 94.3 0.041 8.9E-07 55.0 3.7 26 481-506 2-27 (173)
306 PF13238 AAA_18: AAA domain; P 94.2 0.036 7.7E-07 51.5 3.0 22 482-503 1-22 (129)
307 TIGR02768 TraA_Ti Ti-type conj 94.1 0.057 1.2E-06 66.1 5.2 85 481-568 370-464 (744)
308 PRK03839 putative kinase; Prov 94.1 0.046 9.9E-07 54.7 3.6 26 481-506 2-27 (180)
309 COG0563 Adk Adenylate kinase a 94.0 0.046 1E-06 54.9 3.5 26 481-506 2-27 (178)
310 PF05970 PIF1: PIF1-like helic 94.0 0.067 1.4E-06 60.0 5.1 89 481-569 24-128 (364)
311 PRK13949 shikimate kinase; Pro 93.9 0.06 1.3E-06 53.5 4.1 26 481-506 3-28 (169)
312 PRK10875 recD exonuclease V su 93.9 0.11 2.4E-06 62.0 6.9 38 451-503 154-191 (615)
313 PTZ00088 adenylate kinase 1; P 93.9 0.066 1.4E-06 56.0 4.5 32 480-511 7-38 (229)
314 PRK07261 topology modulation p 93.8 0.064 1.4E-06 53.4 4.1 23 481-503 2-24 (171)
315 PRK14530 adenylate kinase; Pro 93.8 0.06 1.3E-06 55.6 3.9 26 481-506 5-30 (215)
316 TIGR01359 UMP_CMP_kin_fam UMP- 93.7 0.064 1.4E-06 53.7 3.9 23 482-504 2-24 (183)
317 cd02019 NK Nucleoside/nucleoti 93.7 0.06 1.3E-06 45.1 3.1 22 482-503 2-23 (69)
318 PRK06762 hypothetical protein; 93.3 0.081 1.8E-06 52.1 3.7 25 481-505 4-28 (166)
319 cd01428 ADK Adenylate kinase ( 93.2 0.084 1.8E-06 53.2 3.9 24 481-504 1-24 (194)
320 PF13086 AAA_11: AAA domain; P 93.2 0.086 1.9E-06 54.2 4.1 22 482-503 20-41 (236)
321 TIGR00150 HI0065_YjeE ATPase, 93.2 0.17 3.6E-06 48.3 5.5 25 481-505 24-48 (133)
322 TIGR01448 recD_rel helicase, p 93.2 0.13 2.9E-06 62.7 6.1 87 481-569 340-442 (720)
323 PRK05057 aroK shikimate kinase 93.1 0.097 2.1E-06 52.2 4.1 27 481-507 6-32 (172)
324 COG3267 ExeA Type II secretory 93.1 0.41 9E-06 50.2 8.7 196 481-739 53-267 (269)
325 PRK06217 hypothetical protein; 93.1 0.095 2.1E-06 52.7 4.1 25 481-505 3-27 (183)
326 cd02021 GntK Gluconate kinase 93.1 0.091 2E-06 50.7 3.8 22 482-503 2-23 (150)
327 PF13245 AAA_19: Part of AAA d 93.1 0.096 2.1E-06 44.9 3.4 23 481-503 12-35 (76)
328 COG1936 Predicted nucleotide k 93.1 0.095 2.1E-06 51.7 3.7 20 481-500 2-21 (180)
329 PRK14531 adenylate kinase; Pro 93.0 0.095 2E-06 52.7 3.9 24 481-504 4-27 (183)
330 PRK14700 recombination factor 92.9 0.34 7.3E-06 52.2 8.0 50 676-742 63-112 (300)
331 PRK13826 Dtr system oriT relax 92.9 0.068 1.5E-06 67.1 3.2 84 481-569 399-494 (1102)
332 TIGR01313 therm_gnt_kin carboh 92.9 0.08 1.7E-06 51.9 3.1 23 482-504 1-23 (163)
333 cd01878 HflX HflX subfamily. 92.9 0.33 7E-06 49.4 7.7 25 478-502 40-64 (204)
334 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.17 3.7E-06 49.4 5.3 88 480-569 26-125 (157)
335 COG4619 ABC-type uncharacteriz 92.8 0.11 2.4E-06 50.9 3.8 26 480-505 30-55 (223)
336 PRK13889 conjugal transfer rel 92.8 0.11 2.4E-06 64.9 4.8 85 481-568 364-458 (988)
337 TIGR01618 phage_P_loop phage n 92.7 0.074 1.6E-06 55.2 2.6 24 477-500 10-33 (220)
338 TIGR01360 aden_kin_iso1 adenyl 92.6 0.09 1.9E-06 52.6 3.1 23 481-503 5-27 (188)
339 PRK14709 hypothetical protein; 92.6 0.78 1.7E-05 53.2 11.1 118 481-620 207-326 (469)
340 cd00227 CPT Chloramphenicol (C 92.6 0.11 2.5E-06 51.7 3.7 26 481-506 4-29 (175)
341 cd02020 CMPK Cytidine monophos 92.6 0.13 2.7E-06 49.2 3.9 26 482-507 2-27 (147)
342 PF08477 Miro: Miro-like prote 92.5 0.1 2.2E-06 47.9 3.1 25 481-505 1-25 (119)
343 PRK14528 adenylate kinase; Pro 92.5 0.12 2.7E-06 52.1 3.9 26 481-506 3-28 (186)
344 PRK14526 adenylate kinase; Pro 92.4 0.13 2.7E-06 53.2 3.9 26 481-506 2-27 (211)
345 PLN02200 adenylate kinase fami 92.4 0.15 3.4E-06 53.4 4.6 26 479-504 43-68 (234)
346 PRK03846 adenylylsulfate kinas 92.4 0.1 2.3E-06 53.1 3.3 88 481-569 26-120 (198)
347 PRK13946 shikimate kinase; Pro 92.3 0.16 3.5E-06 51.1 4.4 31 478-508 9-39 (184)
348 COG1126 GlnQ ABC-type polar am 92.3 0.061 1.3E-06 54.9 1.3 22 481-502 30-51 (240)
349 TIGR01420 pilT_fam pilus retra 92.2 0.33 7.3E-06 54.0 7.2 24 481-504 124-147 (343)
350 TIGR01351 adk adenylate kinase 92.2 0.13 2.9E-06 52.8 3.8 26 481-506 1-26 (210)
351 COG0703 AroK Shikimate kinase 92.1 0.15 3.1E-06 50.7 3.7 29 480-508 3-31 (172)
352 KOG3595 Dyneins, heavy chain [ 92.1 0.34 7.4E-06 63.5 8.1 154 481-648 129-291 (1395)
353 TIGR02322 phosphon_PhnN phosph 92.1 0.13 2.7E-06 51.4 3.4 24 481-504 3-26 (179)
354 PRK10078 ribose 1,5-bisphospho 92.0 0.13 2.8E-06 51.8 3.5 25 481-505 4-28 (186)
355 PRK03731 aroL shikimate kinase 92.0 0.16 3.4E-06 50.3 3.9 28 481-508 4-31 (171)
356 PRK02496 adk adenylate kinase; 92.0 0.13 2.7E-06 51.7 3.3 25 481-505 3-27 (184)
357 PRK08233 hypothetical protein; 91.9 0.14 2.9E-06 51.0 3.4 24 481-504 5-28 (182)
358 PF01637 Arch_ATPase: Archaeal 91.8 0.17 3.6E-06 52.0 4.0 45 449-505 2-46 (234)
359 PRK13948 shikimate kinase; Pro 91.8 0.18 4E-06 50.7 4.1 28 480-507 11-38 (182)
360 PF13521 AAA_28: AAA domain; P 91.8 0.14 3E-06 50.3 3.2 21 482-502 2-22 (163)
361 PRK13900 type IV secretion sys 91.7 0.2 4.3E-06 55.5 4.6 25 481-505 162-186 (332)
362 PRK06851 hypothetical protein; 91.6 0.18 3.9E-06 56.2 4.2 23 481-503 216-238 (367)
363 cd03222 ABC_RNaseL_inhibitor T 91.6 0.35 7.6E-06 48.5 5.9 83 481-569 27-116 (177)
364 PRK00279 adk adenylate kinase; 91.6 0.18 4E-06 52.0 4.0 29 481-509 2-30 (215)
365 PF09439 SRPRB: Signal recogni 91.5 0.19 4.2E-06 50.4 3.9 32 481-512 5-36 (181)
366 PF13555 AAA_29: P-loop contai 91.4 0.19 4.1E-06 41.2 3.1 23 481-503 25-47 (62)
367 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.4 0.3 6.5E-06 47.1 5.0 84 480-569 27-115 (144)
368 KOG2383 Predicted ATPase [Gene 91.4 0.27 5.8E-06 54.5 5.1 104 481-597 116-235 (467)
369 PRK14529 adenylate kinase; Pro 91.4 0.18 3.9E-06 52.5 3.6 26 481-506 2-27 (223)
370 PRK06581 DNA polymerase III su 91.3 4.2 9.1E-05 42.7 13.4 113 480-623 16-143 (263)
371 PRK14527 adenylate kinase; Pro 91.3 0.23 4.9E-06 50.3 4.3 25 481-505 8-32 (191)
372 PRK05439 pantothenate kinase; 91.3 0.39 8.5E-06 52.4 6.3 80 416-504 26-111 (311)
373 PF06048 DUF927: Domain of unk 91.3 0.24 5.2E-06 53.7 4.6 68 481-563 195-262 (286)
374 PHA02530 pseT polynucleotide k 91.2 0.19 4.1E-06 54.6 3.9 24 481-504 4-27 (300)
375 cd01130 VirB11-like_ATPase Typ 91.2 0.17 3.8E-06 51.0 3.3 25 481-505 27-51 (186)
376 PRK13851 type IV secretion sys 91.2 0.15 3.2E-06 56.7 2.9 25 481-505 164-188 (344)
377 KOG1805 DNA replication helica 91.1 0.11 2.3E-06 62.9 1.9 56 434-503 648-709 (1100)
378 COG1102 Cmk Cytidylate kinase 91.1 0.16 3.4E-06 49.6 2.6 31 482-512 3-33 (179)
379 TIGR03263 guanyl_kin guanylate 91.0 0.16 3.5E-06 50.6 2.8 25 481-505 3-27 (180)
380 PRK04040 adenylate kinase; Pro 91.0 0.18 3.8E-06 51.1 3.1 24 481-504 4-27 (188)
381 PRK14722 flhF flagellar biosyn 91.0 0.62 1.3E-05 52.2 7.6 25 479-503 137-161 (374)
382 cd00071 GMPK Guanosine monopho 90.9 0.2 4.3E-06 48.0 3.2 24 482-505 2-25 (137)
383 cd02027 APSK Adenosine 5'-phos 90.8 0.18 3.9E-06 49.0 2.9 23 482-504 2-24 (149)
384 cd04177 RSR1 RSR1 subgroup. R 90.7 0.2 4.2E-06 49.2 3.1 24 480-503 2-25 (168)
385 PRK00300 gmk guanylate kinase; 90.6 0.21 4.5E-06 51.0 3.3 24 481-504 7-30 (205)
386 PF13479 AAA_24: AAA domain 90.6 0.17 3.8E-06 52.2 2.7 27 479-509 3-29 (213)
387 PLN02459 probable adenylate ki 90.6 0.26 5.7E-06 52.3 4.0 27 480-506 30-56 (261)
388 COG1116 TauB ABC-type nitrate/ 90.5 0.19 4.2E-06 52.5 2.9 25 481-505 31-55 (248)
389 PLN02674 adenylate kinase 90.5 0.29 6.2E-06 51.7 4.2 25 481-505 33-57 (244)
390 cd04137 RheB Rheb (Ras Homolog 90.4 0.21 4.6E-06 49.4 3.0 23 480-502 2-24 (180)
391 TIGR03499 FlhF flagellar biosy 90.3 0.63 1.4E-05 50.3 6.8 25 479-503 194-218 (282)
392 PRK05541 adenylylsulfate kinas 90.3 0.24 5.2E-06 49.3 3.3 25 480-504 8-32 (176)
393 cd01124 KaiC KaiC is a circadi 90.2 0.22 4.8E-06 49.7 3.0 22 482-503 2-23 (187)
394 PF01926 MMR_HSR1: 50S ribosom 90.2 0.22 4.7E-06 45.8 2.7 21 481-501 1-21 (116)
395 cd04119 RJL RJL (RabJ-Like) su 90.1 0.24 5.1E-06 48.0 3.0 23 480-502 1-23 (168)
396 TIGR03574 selen_PSTK L-seryl-t 90.0 0.21 4.6E-06 52.8 2.8 23 482-504 2-24 (249)
397 cd04124 RabL2 RabL2 subfamily. 90.0 0.24 5.3E-06 48.2 3.0 22 480-501 1-22 (161)
398 PRK08154 anaerobic benzoate ca 89.9 0.57 1.2E-05 51.3 6.2 31 478-508 132-162 (309)
399 PRK12339 2-phosphoglycerate ki 89.8 0.31 6.8E-06 49.8 3.7 25 481-505 5-29 (197)
400 COG4088 Predicted nucleotide k 89.8 0.21 4.6E-06 50.6 2.4 24 482-505 4-27 (261)
401 cd03227 ABC_Class2 ABC-type Cl 89.7 0.39 8.5E-06 47.2 4.3 89 481-569 23-126 (162)
402 PRK08485 DNA polymerase III su 89.7 1.9 4.2E-05 43.8 9.2 101 545-690 56-157 (206)
403 PRK06547 hypothetical protein; 89.7 0.34 7.3E-06 48.4 3.8 23 481-503 17-39 (172)
404 COG1485 Predicted ATPase [Gene 89.7 0.32 6.9E-06 53.3 3.8 98 481-597 67-172 (367)
405 cd02023 UMPK Uridine monophosp 89.7 0.27 5.9E-06 49.9 3.2 22 482-503 2-23 (198)
406 cd03281 ABC_MSH5_euk MutS5 hom 89.6 1.1 2.4E-05 46.3 7.7 21 481-501 31-51 (213)
407 KOG1968 Replication factor C, 89.6 0.7 1.5E-05 57.0 7.1 85 481-565 359-450 (871)
408 TIGR00231 small_GTP small GTP- 89.6 0.27 5.9E-06 46.4 3.0 23 480-502 2-24 (161)
409 PF03193 DUF258: Protein of un 89.6 0.29 6.3E-06 48.2 3.1 23 481-503 37-59 (161)
410 PRK04182 cytidylate kinase; Pr 89.5 0.35 7.7E-06 47.8 3.8 26 481-506 2-27 (180)
411 cd00157 Rho Rho (Ras homology) 89.4 0.29 6.2E-06 47.8 3.0 24 480-503 1-24 (171)
412 cd01129 PulE-GspE PulE/GspE Th 89.4 1.5 3.3E-05 46.9 8.8 24 481-504 82-105 (264)
413 cd04113 Rab4 Rab4 subfamily. 89.4 0.29 6.2E-06 47.4 3.0 23 481-503 2-24 (161)
414 cd04160 Arfrp1 Arfrp1 subfamil 89.4 0.27 5.9E-06 47.8 2.9 23 481-503 1-23 (167)
415 KOG0060 Long-chain acyl-CoA tr 89.4 0.25 5.4E-06 57.1 2.8 30 475-504 457-486 (659)
416 PRK01184 hypothetical protein; 89.4 0.34 7.5E-06 48.5 3.6 22 481-503 3-24 (184)
417 PLN02165 adenylate isopentenyl 89.3 0.42 9.2E-06 52.5 4.5 28 481-508 45-72 (334)
418 cd04138 H_N_K_Ras_like H-Ras/N 89.3 0.3 6.6E-06 46.9 3.1 22 481-502 3-24 (162)
419 cd04155 Arl3 Arl3 subfamily. 89.3 0.29 6.2E-06 48.0 2.9 24 479-502 14-37 (173)
420 TIGR02173 cyt_kin_arch cytidyl 89.3 0.33 7.2E-06 47.6 3.4 26 481-506 2-27 (171)
421 PRK05480 uridine/cytidine kina 89.2 0.33 7.1E-06 49.8 3.4 25 479-503 6-30 (209)
422 smart00175 RAB Rab subfamily o 89.2 0.3 6.4E-06 47.2 3.0 23 480-502 1-23 (164)
423 COG1120 FepC ABC-type cobalami 89.2 0.3 6.4E-06 51.8 3.1 26 480-505 29-54 (258)
424 cd04136 Rap_like Rap-like subf 89.2 0.31 6.7E-06 47.1 3.1 22 480-501 2-23 (163)
425 PF00437 T2SE: Type II/IV secr 89.2 0.23 5E-06 53.1 2.3 88 481-572 129-223 (270)
426 cd00154 Rab Rab family. Rab G 89.1 0.31 6.8E-06 46.2 3.0 23 481-503 2-24 (159)
427 TIGR00235 udk uridine kinase. 89.1 0.35 7.5E-06 49.6 3.5 25 480-504 7-31 (207)
428 cd01867 Rab8_Rab10_Rab13_like 89.0 0.31 6.7E-06 47.7 3.0 24 480-503 4-27 (167)
429 TIGR02782 TrbB_P P-type conjug 89.0 0.3 6.5E-06 53.3 3.1 24 481-504 134-157 (299)
430 COG3839 MalK ABC-type sugar tr 89.0 0.28 6.1E-06 54.0 2.9 24 481-504 31-54 (338)
431 cd04101 RabL4 RabL4 (Rab-like4 89.0 0.32 6.9E-06 47.2 3.0 22 480-501 1-22 (164)
432 PRK00889 adenylylsulfate kinas 88.8 0.31 6.8E-06 48.4 2.9 24 481-504 6-29 (175)
433 PRK09825 idnK D-gluconate kina 88.7 0.37 8.1E-06 48.2 3.3 25 481-505 5-29 (176)
434 TIGR02788 VirB11 P-type DNA tr 88.6 0.33 7.1E-06 53.2 3.0 25 481-505 146-170 (308)
435 PRK13833 conjugal transfer pro 88.5 0.34 7.3E-06 53.3 3.0 23 481-503 146-168 (323)
436 smart00173 RAS Ras subfamily o 88.5 0.36 7.9E-06 46.8 3.0 22 481-502 2-23 (164)
437 TIGR00554 panK_bact pantothena 88.5 0.64 1.4E-05 50.4 5.1 25 480-504 63-87 (290)
438 PRK10536 hypothetical protein; 88.4 0.53 1.1E-05 49.9 4.3 22 481-502 76-97 (262)
439 cd01862 Rab7 Rab7 subfamily. 88.4 0.35 7.5E-06 47.2 2.9 22 481-502 2-23 (172)
440 TIGR02237 recomb_radB DNA repa 88.3 0.46 9.9E-06 48.6 3.8 24 480-503 13-36 (209)
441 cd04156 ARLTS1 ARLTS1 subfamil 88.3 0.36 7.8E-06 46.6 2.8 22 481-502 1-22 (160)
442 cd04157 Arl6 Arl6 subfamily. 88.3 0.32 6.9E-06 47.0 2.5 22 481-502 1-22 (162)
443 cd04117 Rab15 Rab15 subfamily. 88.2 0.36 7.9E-06 47.1 2.8 21 481-501 2-22 (161)
444 PRK00771 signal recognition pa 88.2 1.2 2.6E-05 51.1 7.3 26 479-504 95-120 (437)
445 cd01860 Rab5_related Rab5-rela 88.2 0.38 8.3E-06 46.5 2.9 23 480-502 2-24 (163)
446 PRK05537 bifunctional sulfate 88.1 0.57 1.2E-05 55.7 4.8 52 444-505 367-418 (568)
447 cd04159 Arl10_like Arl10-like 88.0 0.35 7.7E-06 46.0 2.6 21 482-502 2-22 (159)
448 cd00876 Ras Ras family. The R 88.0 0.4 8.6E-06 46.0 3.0 22 481-502 1-22 (160)
449 PRK14737 gmk guanylate kinase; 88.0 0.45 9.7E-06 48.1 3.4 25 481-505 6-30 (186)
450 PRK13695 putative NTPase; Prov 88.0 0.42 9E-06 47.5 3.1 23 481-503 2-24 (174)
451 cd00820 PEPCK_HprK Phosphoenol 87.9 0.4 8.6E-06 43.9 2.7 20 481-500 17-36 (107)
452 cd01898 Obg Obg subfamily. Th 87.8 0.4 8.8E-06 46.7 2.9 22 481-502 2-23 (170)
453 PF00005 ABC_tran: ABC transpo 87.8 0.34 7.4E-06 45.7 2.3 23 481-503 13-35 (137)
454 cd01868 Rab11_like Rab11-like. 87.8 0.39 8.5E-06 46.7 2.8 23 480-502 4-26 (165)
455 cd04145 M_R_Ras_like M-Ras/R-R 87.7 0.44 9.6E-06 46.0 3.0 23 480-502 3-25 (164)
456 PF00485 PRK: Phosphoribulokin 87.7 0.39 8.5E-06 48.7 2.8 25 482-506 2-26 (194)
457 PF05707 Zot: Zonular occluden 87.6 0.62 1.3E-05 47.3 4.2 29 482-510 3-35 (193)
458 PRK14738 gmk guanylate kinase; 87.6 0.44 9.6E-06 48.9 3.1 24 481-504 15-38 (206)
459 cd01866 Rab2 Rab2 subfamily. 87.6 0.41 8.9E-06 47.0 2.8 23 480-502 5-27 (168)
460 PRK13975 thymidylate kinase; P 87.6 0.46 1E-05 48.0 3.2 24 481-504 4-27 (196)
461 cd04139 RalA_RalB RalA/RalB su 87.6 0.44 9.6E-06 45.9 3.0 22 481-502 2-23 (164)
462 PRK13894 conjugal transfer ATP 87.5 0.42 9.1E-06 52.6 3.1 23 481-503 150-172 (319)
463 TIGR00017 cmk cytidylate kinas 87.5 0.57 1.2E-05 48.6 3.9 27 481-507 4-30 (217)
464 PLN02199 shikimate kinase 87.5 0.56 1.2E-05 50.6 3.9 26 481-506 104-129 (303)
465 COG5545 Predicted P-loop ATPas 87.5 0.24 5.2E-06 54.0 1.1 139 441-601 163-306 (517)
466 cd04140 ARHI_like ARHI subfami 87.5 0.46 1E-05 46.4 3.1 23 480-502 2-24 (165)
467 PRK08356 hypothetical protein; 87.3 0.46 1E-05 48.2 3.1 21 481-501 7-27 (195)
468 COG1117 PstB ABC-type phosphat 87.3 0.46 9.9E-06 48.6 2.9 23 481-503 35-57 (253)
469 cd04106 Rab23_lke Rab23-like s 87.3 0.44 9.5E-06 46.0 2.8 22 481-502 2-23 (162)
470 PF10662 PduV-EutP: Ethanolami 87.3 0.44 9.6E-06 45.9 2.7 22 481-502 3-24 (143)
471 PF00406 ADK: Adenylate kinase 87.3 0.39 8.5E-06 46.5 2.4 20 484-503 1-20 (151)
472 cd04115 Rab33B_Rab33A Rab33B/R 87.2 0.46 1E-05 46.7 2.9 22 480-501 3-24 (170)
473 PRK13808 adenylate kinase; Pro 87.2 0.58 1.3E-05 51.5 3.9 26 481-506 2-27 (333)
474 cd01892 Miro2 Miro2 subfamily. 87.2 0.45 9.8E-06 46.9 2.8 24 478-501 3-26 (169)
475 COG3842 PotA ABC-type spermidi 87.2 0.43 9.3E-06 52.9 2.8 23 481-503 33-55 (352)
476 TIGR02528 EutP ethanolamine ut 87.1 0.44 9.6E-06 45.1 2.7 21 481-501 2-22 (142)
477 cd01918 HprK_C HprK/P, the bif 87.1 0.54 1.2E-05 45.7 3.2 24 479-502 14-37 (149)
478 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 87.1 0.46 1E-05 46.2 2.8 22 480-501 3-24 (166)
479 PF00735 Septin: Septin; Inte 87.1 0.35 7.6E-06 52.2 2.1 25 479-503 4-28 (281)
480 cd04176 Rap2 Rap2 subgroup. T 87.1 0.48 1E-05 45.9 2.9 22 480-501 2-23 (163)
481 KOG0741 AAA+-type ATPase [Post 87.0 0.33 7.2E-06 55.4 1.9 25 479-503 538-562 (744)
482 PRK12608 transcription termina 87.0 0.61 1.3E-05 52.0 4.0 25 481-505 135-159 (380)
483 PRK10416 signal recognition pa 86.9 1.5 3.1E-05 48.4 6.8 25 479-503 114-138 (318)
484 TIGR01425 SRP54_euk signal rec 86.8 1.7 3.6E-05 49.7 7.4 24 480-503 101-124 (429)
485 cd03255 ABC_MJ0796_Lo1CDE_FtsE 86.8 0.48 1E-05 48.8 2.9 24 480-503 31-54 (218)
486 cd02024 NRK1 Nicotinamide ribo 86.7 0.77 1.7E-05 46.5 4.2 23 482-504 2-24 (187)
487 cd00877 Ran Ran (Ras-related n 86.7 0.54 1.2E-05 46.2 3.1 22 481-502 2-23 (166)
488 PRK05800 cobU adenosylcobinami 86.7 0.67 1.5E-05 46.1 3.7 25 481-505 3-27 (170)
489 cd01864 Rab19 Rab19 subfamily. 86.6 0.5 1.1E-05 46.0 2.8 22 480-501 4-25 (165)
490 cd02028 UMPK_like Uridine mono 86.5 0.52 1.1E-05 47.3 2.9 23 482-504 2-24 (179)
491 cd01863 Rab18 Rab18 subfamily. 86.5 0.52 1.1E-05 45.5 2.8 22 481-502 2-23 (161)
492 cd03264 ABC_drug_resistance_li 86.5 0.5 1.1E-05 48.4 2.9 23 481-503 27-49 (211)
493 PF01583 APS_kinase: Adenylyls 86.5 0.54 1.2E-05 46.1 2.8 23 481-503 4-26 (156)
494 cd01861 Rab6 Rab6 subfamily. 86.4 0.53 1.2E-05 45.4 2.9 22 481-502 2-23 (161)
495 cd04146 RERG_RasL11_like RERG/ 86.4 0.55 1.2E-05 45.7 2.9 20 481-500 1-20 (165)
496 cd04164 trmE TrmE (MnmE, ThdF, 86.3 0.57 1.2E-05 44.6 3.0 22 480-501 2-23 (157)
497 KOG0058 Peptide exporter, ABC 86.3 1.8 3.9E-05 51.6 7.5 30 476-505 491-520 (716)
498 PRK09361 radB DNA repair and r 86.3 0.69 1.5E-05 48.0 3.8 24 480-503 24-47 (225)
499 PF00071 Ras: Ras family; Int 86.3 0.55 1.2E-05 45.4 2.8 22 482-503 2-23 (162)
500 TIGR03877 thermo_KaiC_1 KaiC d 86.3 0.68 1.5E-05 48.6 3.7 23 480-502 22-44 (237)
No 1
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=8.3e-141 Score=1166.93 Aligned_cols=716 Identities=53% Similarity=0.822 Sum_probs=646.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccccCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 003637 26 DNTFSSPAGSSRASGRGRGGGRRRRRSTTPTAFLTPRANQSRFATSSETPNTTPSRSNRRSNGQRHATSPSSTDDVPLSS 105 (806)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (806)
+.+..+||+| +|++.+....+.+..+|++|+||+.. ..|.|....|| | .+ ++......-
T Consensus 52 ~~~~~~~a~~---~~~~~~~s~~~~d~~sp~~~~~p~~~--~~~~~~~~~tP-r--~~------------l~~~~~~~~- 110 (804)
T KOG0478|consen 52 GANSVPPATS---AGKRGRNSHLDSDFASPLNYSTPSSG--LDPQSGDVGTP-R--GD------------LGFSLVFIR- 110 (804)
T ss_pred CCCCCCcccc---ccccCCCCcccccccCccccCCcccC--CCcccccCCCC-C--cc------------cccceeeee-
Confidence 4455556664 34555555666777999999999987 56666666666 2 11 110100000
Q ss_pred CcCCCCCCCCCceEEEccCCCHHHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhc
Q 003637 106 SEAGDDMDEATPTFVWGTNISVQDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFD 185 (806)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~ 185 (806)
+ .++...+..++||||+++++++.+.|+.||.+|... .....+|++.|.++...+...+++|..||..
T Consensus 111 -~-~~~~~~~~~~~Iwgt~v~iqe~~~~F~~fl~rf~~~----------d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~ 178 (804)
T KOG0478|consen 111 -E-VQEVGNEPALVIWGTNVNIQECPENFDDFLRRFRGI----------DPLCPYYIKSLLELKELEPEFLNLDAEHLTD 178 (804)
T ss_pred -e-eeecCCcceEEEEeeEEEHHhhhhHHHHHHHhcCCC----------CccchHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 0 111233678999999999999999999999999542 2336889999999999999999999999999
Q ss_pred cCHHHHHHHHhCHHHHHHHHHHHHHHHHHhhC--cccCCcEEEEEeecCCccCCCCCCccCCCceEEEEEEEEEecccce
Q 003637 186 YDSDLYNKMVRYPLEVLAIFDIVLMDIVSLIN--PLFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIP 263 (806)
Q Consensus 186 fd~~L~~~l~~~P~e~l~~~d~al~~~~~~~~--~~~~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p 263 (806)
|+.+||.+++.||.|++|.|+.++++++.+.+ ..+.+.++||++|+.++.+||+|++.+|+|||+|+|+|+|+|+|.|
T Consensus 179 ~~~~Ly~ql~~ypqevip~~d~t~~~~~~e~~~~~~~~~~i~vRPfn~~~~~smr~lNp~dIDkLisI~GmViRss~vip 258 (804)
T KOG0478|consen 179 FDMDLYRQLVVYPQEVIPIFDETANEIVLERYVLEILEKSIKVRPFNAGKTFSMRNLNPNDIDKLISISGMVIRSSEVIP 258 (804)
T ss_pred ccHHHHHhhhhchHhhcccchHHHHHHHHhhccccchhceeEeeccCcccccccccCChhhhhheEEeeeEEEecCCCCH
Confidence 99999999999999999999999999988877 4567899999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecccCccCCceEecCCcccCCcccCccccCCCCceeEeccccccceeeEEEEeeCCCCCCCCCCCeEEEEEe
Q 003637 264 EIREAIFRCLVCGYYSDPIVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLM 343 (806)
Q Consensus 264 ~l~~a~f~C~~C~~~~~~~~~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l 343 (806)
++++++|+|..|++... +..++|++.+|..|. .|+.++.|+++|++|+|.|+|.||+||+|+.+|.|++|++|.|++
T Consensus 259 em~~afFrC~vC~~~~~-ve~drg~i~eP~~C~--~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~ 335 (804)
T KOG0478|consen 259 EMVEAFFRCSVCGHEIA-VESDRGRIKEPMLCK--ECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVL 335 (804)
T ss_pred HHHhHhhhhhhcCceEE-EEeecCccCCCcccc--cccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEE
Confidence 99999999999999998 788899999999996 599999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCEEEEEEEEEeeeeccCCCcccccceeeEEEEEEEEEEcccccccccccccccCCCCCcccccCCCHHH
Q 003637 344 HDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESK 423 (806)
Q Consensus 344 ~~dLvd~~~pGd~V~VtGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (806)
++||||+|+|||+|.|||||++.+.+.++..+..+++|++||+++||++.+..+....+..+ + +-.+..++
T Consensus 336 ~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d--~-------~~~~~~~~ 406 (804)
T KOG0478|consen 336 HNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERD--V-------DEVRRIED 406 (804)
T ss_pred ehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhcccccccc--c-------cccccHHH
Confidence 99999999999999999999999999999999999999999999999999887654322111 1 23567788
Q ss_pred HHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHC
Q 003637 424 IQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 424 ~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
+++|.++++.||+|+.|++||||+|||||++|+||||+||||+.+....+.++||+|||||+||||||||||++++|+++
T Consensus 407 ~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~ 486 (804)
T KOG0478|consen 407 LEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLL 486 (804)
T ss_pred HHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998887799999999999999999999999999999
Q ss_pred CCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 504 PRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 504 pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
||++||+|+|++++|||+.+.+|+.+++|+++.|+|+++|+|||||||||||+...|+.|||+||||+++|+|||+.++|
T Consensus 487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sL 566 (804)
T KOG0478|consen 487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASL 566 (804)
T ss_pred CcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 584 NARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
|+|++||||+||..++||+++++.+||+||++|+|||||||+++|.+|+..|+.|+.|++.+|.+.........++...|
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~l 646 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLL 646 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998766566778999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
+.||.||+++++|.+++||.+.+.++|+.+|+.+...+ .+..|+||||+|+|+++|||++++++.|...||++|++
T Consensus 647 r~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~----~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~ 722 (804)
T KOG0478|consen 647 RDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAG----QITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVR 722 (804)
T ss_pred HHHHHHHhccCCccccHHHHHHHHHHhhhhhhhccccc----ccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 99999999999999999999999999999999764433 45678999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCchhhHhhhCCchhHHHHHHHHHHHHHHHHH
Q 003637 744 LLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENMVSSTRNIIM 790 (806)
Q Consensus 744 l~~~sl~~~~~~~~~g~~d~~~~~~g~s~~~~~~~~~~~~~i~~~~~ 790 (806)
+.+.++.+.+.|+.+|.+|++++.+|.+...++.++.+.+++..+++
T Consensus 723 l~R~aL~~~a~d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~ 769 (804)
T KOG0478|consen 723 LLREALKQSATDPATGKVDMDILATGNSVVSRKKVEILGGAILKMLK 769 (804)
T ss_pred HHHHHhcccCCCCCCCceeehhhhhcccccchHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999988888888877777765554
No 2
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-124 Score=1027.45 Aligned_cols=613 Identities=37% Similarity=0.600 Sum_probs=550.0
Q ss_pred HHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhc-cCHHHHHHHHhCHHHHHHHHH
Q 003637 128 QDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFD-YDSDLYNKMVRYPLEVLAIFD 206 (806)
Q Consensus 128 ~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~-fd~~L~~~l~~~P~e~l~~~d 206 (806)
+-+.+.|..||+.|+.. .++++|+..+..+...+..+|.||+.||.. |++.|+..|..+|..++|++.
T Consensus 23 ~~~~e~~~~Fle~~~~~-----------~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~ 91 (764)
T KOG0480|consen 23 ERVEEEFLQFLESFKVQ-----------AGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMC 91 (764)
T ss_pred cchHHHHHHHHHHhhcc-----------ccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHH
Confidence 44678899999999873 347899999999998899999999999999 999999999999999999999
Q ss_pred HHHHHHHHhhCc---ccCCcEEEEEeecCCccCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEecccCccCCceE
Q 003637 207 IVLMDIVSLINP---LFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPIV 283 (806)
Q Consensus 207 ~al~~~~~~~~~---~~~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~~~ 283 (806)
.+++.++.+... .+.++|+++|+|+|....+|+|+++.||+||+|.|+|+|+|+|+|++++++|.|..||..+. ..
T Consensus 92 ~av~~~l~d~~~~~~~~~~~~~v~f~nlp~~~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~-~v 170 (764)
T KOG0480|consen 92 RAVHKVLKDWSTNSGALVKKIYVRFYNLPTRHKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIR-NV 170 (764)
T ss_pred HHHHHHHHcccccccccceeEEEEEeccccccccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeec-cc
Confidence 999999877332 34678999999999999999999999999999999999999999999999999999999988 66
Q ss_pred ecCCcccCCcccCccccCCCCceeEeccccccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCCCCCEEEEEEEE
Q 003637 284 VDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIY 363 (806)
Q Consensus 284 ~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd~V~VtGIl 363 (806)
+++++|++|+.|+++.|.++..|.++.++|.|.|||+|||||+.+++|.|.+||+++|+|++|||++|+|||+|.||||+
T Consensus 171 ~q~fkYt~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGil 250 (764)
T KOG0480|consen 171 EQQFKYTEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGIL 250 (764)
T ss_pred hhcCccCCCccCCCccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEE
Confidence 78899999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeee---ccCCCcccccc------eeeEEEEEEEEEEccccc-ccc--cccccccCCCCCcccccCCCHHHHHHHHHHh
Q 003637 364 RAMSV---RVGPTQRTVKS------LFKTYIDCLHIKKADKSR-MLV--EDAMEIDNSHPRIEDEIQFDESKIQQLKELS 431 (806)
Q Consensus 364 ~~~~~---~~~~~~~~~~~------~~~~yi~~~~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 431 (806)
.+.|. -..+..+.... .+-+++.+++|+..+..- |.. ..+....+......-...++.+|+..+++++
T Consensus 251 iVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~ 330 (764)
T KOG0480|consen 251 IVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMS 330 (764)
T ss_pred EEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHh
Confidence 98874 12232222222 566888888887654431 100 0000000000000011368899999999999
Q ss_pred cChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 432 RQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 432 ~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
+++++|.+|++|++|+||||+.||+||+|+||||+.|....|+.+||++|||+||||||||||++++++.++||++||+|
T Consensus 331 ~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsG 410 (764)
T KOG0480|consen 331 KDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSG 410 (764)
T ss_pred cCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEE
Q 003637 512 KGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLA 591 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIA 591 (806)
+.++++|||+++++|+++|+|.+|+|||++||+|||||||||||+..+|.+||||||||+|+|+|||+.++||+|++|||
T Consensus 411 kaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 411 KASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred cccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccC--CCCCHHHHHHHHHH
Q 003637 592 CANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQ--GVLDLATLTAYVSY 669 (806)
Q Consensus 592 AaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~--~~i~~~~Lk~yi~~ 669 (806)
||||..|+||+.+++.+|++++++++|||||+|+++|.+++..|..||+||++.|..-.+ ... ..++.+.+++||.|
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-~~~~~~~~~~e~vrkYi~y 569 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-ATERVCVYTLEQVRKYIRY 569 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc-cccccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875433 233 48999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAM 749 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl 749 (806)
|| +++|.++.+|.+.|.+.|..||+.+.. ++...+++||+||||++|||++|.||+++++.|+++|+.+|++|++.|+
T Consensus 570 AR-~~~P~ls~ea~~~lve~Y~~lR~~~~~-~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 570 AR-NFKPKLSKEASEMLVEKYKGLRQRDAQ-GNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred HH-hcCccccHHHHHHHHHHHHHHHHhhcc-ccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 99 699999999999999999999997533 3447789999999999999999999999999999999999999999998
Q ss_pred Hhhhcc
Q 003637 750 QQSATD 755 (806)
Q Consensus 750 ~~~~~~ 755 (806)
.....|
T Consensus 648 v~ve~d 653 (764)
T KOG0480|consen 648 VRVEGD 653 (764)
T ss_pred eeeccc
Confidence 765544
No 3
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=1.2e-119 Score=1055.42 Aligned_cols=670 Identities=37% Similarity=0.613 Sum_probs=585.1
Q ss_pred CCCCceEEEccCCCHHHHHHHHHHHHHhcccccccccC----CcccccchhhHHHHHHHHHHcC----------CcEEEE
Q 003637 113 DEATPTFVWGTNISVQDVKSAIQMFLKHFREKEELLSG----SESEIYKEGKYMRAINRVLEIE----------GEWIDV 178 (806)
Q Consensus 113 ~~~~~~~~~g~~i~~~~~~~~f~~FL~~F~~~~~~~~~----~~~~~~~~~~Y~~~i~~~~~~~----------~~~l~V 178 (806)
|-+..+++...+ +++++++|.+||++|.+..+.+.- +.-..+...+|..+|.+|+..+ ..+|+|
T Consensus 73 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~V 150 (915)
T PTZ00111 73 DVARLPFLLDNR--LEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEV 150 (915)
T ss_pred hhhhcchhhhhH--HHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEE
Confidence 455556666665 579999999999999765543321 1123455679999999999865 379999
Q ss_pred echhhhccCHHHHHHHHhCHHHHHHHHHHHHHHHHHhhC----cc--cC---CcEEEEEeecCCccCCCCCCccCCCceE
Q 003637 179 DANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLIN----PL--FE---KHVQVRIYNLKSSTAMRNLNPSDIEKMV 249 (806)
Q Consensus 179 d~~dL~~fd~~L~~~l~~~P~e~l~~~d~al~~~~~~~~----~~--~~---~~i~vr~~nl~~~~~iR~L~~~~igkLV 249 (806)
|++||+.|++.||.+|+.+|.++|++|+.++.+++..+. +. .. ..++||++|++....+|+|++.+|||||
T Consensus 151 d~~~l~~fd~~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV 230 (915)
T PTZ00111 151 DLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLMNKPVSDCVGNLEPSMADSLV 230 (915)
T ss_pred EHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEeCCCCCCCcccCCHhhCCCeE
Confidence 999999999999999999999999999999988765421 11 11 2479999999999999999999999999
Q ss_pred EEEEEEEEecccceeEEEEEEEecc-----------cCccCCceEecCCcccCCcccCccccCCCCceeEecccccccee
Q 003637 250 SLKGMVIRCSSIIPEIREAIFRCLV-----------CGYYSDPIVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADK 318 (806)
Q Consensus 250 ~i~GiV~r~S~v~p~l~~a~f~C~~-----------C~~~~~~~~~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~ 318 (806)
+|+|+|+|+|.|+|+++.++|+|.. |++... +.+.++++.+|..|++ |+++++|.++++.|.|+||
T Consensus 231 ~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~-~~~~~g~~~~P~~C~~--C~~~~~f~l~~~~s~f~D~ 307 (915)
T PTZ00111 231 QFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHY-EYVIQGEVNEPLLCNE--CNSKYTFELNHNMCVYSTK 307 (915)
T ss_pred EEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCcccc-ccccCCcccCCCCCCC--CCCCCCeEEccCccEEEee
Confidence 9999999999999999999999986 776655 5566789999999965 9999999999999999999
Q ss_pred eEEEEeeCCCCCCCCCCC--------------------eEEEEEecccccccCCCCCEEEEEEEEEeeeeccCCCccccc
Q 003637 319 QIVRLQETPDDIPDGGTP--------------------HTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVK 378 (806)
Q Consensus 319 Q~IkiQE~~~~~p~G~~P--------------------rti~v~l~~dLvd~~~pGd~V~VtGIl~~~~~~~~~~~~~~~ 378 (806)
|+|||||.|+++|.|++| |+|+|+|++||||+|+|||+|+|||||++.+.+.+...++.+
T Consensus 308 Q~IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~ 387 (915)
T PTZ00111 308 KIVKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLK 387 (915)
T ss_pred eEEEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccc
Confidence 999999999999999999 999999999999999999999999999988766555555667
Q ss_pred ceeeEEEEEEEEEEcccccccccccccccCCCCCcccccCCCHHHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHH
Q 003637 379 SLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGL 458 (806)
Q Consensus 379 ~~~~~yi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~i 458 (806)
++|++|++++||+..++....... .+.+ ...+...|+++++++|++++++|++|+.|++||||+||||++||+||
T Consensus 388 ~~~~~yl~~~~i~~~~~~~~~~~~-~~~~----~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ai 462 (915)
T PTZ00111 388 SLYTYFVNVIHVKVINSTNANQPE-KGLK----YLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGL 462 (915)
T ss_pred cccceEEEEEEEEEeccccccccc-cccc----cccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHH
Confidence 899999999999876543110000 0000 01123579999999999999999999999999999999999999999
Q ss_pred hhhhcCCccccC-----CCC----CccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-cCCC
Q 003637 459 LCQLFGGNALKL-----PSG----ASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-KDPE 528 (806)
Q Consensus 459 ll~L~g~~~~~~-----~~~----~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-k~~~ 528 (806)
+|+|+||+.+.. ++| +++||++||||+|+||||||++|+++|+++||++|++|++++.+||++.+. ++..
T Consensus 463 lL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~ 542 (915)
T PTZ00111 463 LCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESD 542 (915)
T ss_pred HHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccc
Confidence 999999987643 334 789999999999999999999999999999999999999999999999887 5566
Q ss_pred CCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccc
Q 003637 529 TGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIE 608 (806)
Q Consensus 529 ~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~ 608 (806)
+|+|.+++|++++|++|+||||||++|++.+|.+||++||+|+++|+|+|+.++++++|+||||+||.+|+||..+++.+
T Consensus 543 tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~e 622 (915)
T PTZ00111 543 NGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIE 622 (915)
T ss_pred cCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCC----C---------------------CccCCCCCHHHH
Q 003637 609 NIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENP----E---------------------NSEQGVLDLATL 663 (806)
Q Consensus 609 ~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~----~---------------------~~~~~~i~~~~L 663 (806)
|++||++|+|||||+|++.|.++++.|..||.||++.|...+ . ......++.++|
T Consensus 623 ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lL 702 (915)
T PTZ00111 623 NINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDML 702 (915)
T ss_pred ccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHH
Confidence 999999999999999999999999999999999998763210 0 001245899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCC--------------------CCCCCcccccCHHHHHHHHHHHHH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNF--------------------PGSSKKVITATPRQIESLIRLSEA 723 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~--------------------~gn~~~~~~it~R~Leslirla~a 723 (806)
++||.|||++++|.|+++|.+.|.++|++||+.... .+.....+++|+||||+|||||+|
T Consensus 703 rkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA 782 (915)
T PTZ00111 703 RMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVS 782 (915)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974110 112234689999999999999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHHHHHhhhccCCCCCchhhHhhhCCchhHHHHHHHHHHHHHHHHHHH
Q 003637 724 LARIRLSELVEKHDVEEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENMVSSTRNIIMEK 792 (806)
Q Consensus 724 ~A~l~~~~~V~~~Dv~~ai~l~~~sl~~~~~~~~~g~~d~~~~~~g~s~~~~~~~~~~~~~i~~~~~~~ 792 (806)
+|||+++++|+.+||.+|++|++.++.+.++||++|.+|+|.+.+|.+.++|++++.+.++|++++..+
T Consensus 783 ~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~~~~ 851 (915)
T PTZ00111 783 LARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVLTRS 851 (915)
T ss_pred HhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999998887654
No 4
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-120 Score=1039.39 Aligned_cols=611 Identities=44% Similarity=0.744 Sum_probs=559.0
Q ss_pred hhhHHHHHHHHHHcCCcEEEEechhhhccCHHHHHHHHhCHHHHHHHHHHHHHHHHHhhCccc---CCcEEEEEeecCCc
Q 003637 158 EGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVLMDIVSLINPLF---EKHVQVRIYNLKSS 234 (806)
Q Consensus 158 ~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~L~~~l~~~P~e~l~~~d~al~~~~~~~~~~~---~~~i~vr~~nl~~~ 234 (806)
...|.+++ .+......++.||+.|+..|+++|+..|+.+|.+++++|+.++.++...+.+.+ ...++++|.++|..
T Consensus 16 ~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (682)
T COG1241 16 ILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEVDRSLKKIHVRFKNLPNR 94 (682)
T ss_pred HHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccccccccceEEEecCCcCC
Confidence 45666654 333444459999999999999999999999999999999999999988777655 25799999999999
Q ss_pred cCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEecccCccCCceEecCCcccCCcccCcccc-C-CCCceeEeccc
Q 003637 235 TAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPIVVDRGRINEPSTCLKQEC-L-AKNSMTLVHNR 312 (806)
Q Consensus 235 ~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~~~~~~~~~~~P~~C~~~~C-~-~~~~~~l~~~~ 312 (806)
.++|+|++.|+||||+|+|+|+|+|.|+|++++++|.|.+||+.+. +++....+.+|..|++ | . .+++|.++++.
T Consensus 95 ~~iR~l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~-~~~~~~~~~~~~~C~~--~~~~~~~~~~~~~~~ 171 (682)
T COG1241 95 LSIRELRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVE-VEQSEFRVEPPRECEN--CGKFGKGPLKLVPRK 171 (682)
T ss_pred cChhhCchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEE-EEeccccccCCccCCC--ccccCCCceEEecCc
Confidence 9999999999999999999999999999999999999999999988 6777777888999976 6 2 24579999999
Q ss_pred cccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCCCCCEEEEEEEEEeeeeccCCCcccccceeeEEEEEEEEEE
Q 003637 313 CRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKK 392 (806)
Q Consensus 313 s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd~V~VtGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~ 392 (806)
|.|+|||+|+|||.|+.+|.|++||+++|+|++|||++++|||+|.||||++..+.+...+ .....+|++|+++++|.+
T Consensus 172 s~f~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~-~~~~~~~~~~~~a~~v~~ 250 (682)
T COG1241 172 SEFIDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSG-RRKGPVFEIYLEANSVEK 250 (682)
T ss_pred ceeeeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEeccccccccc-ccCCceEEEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999776322211 344678999999999987
Q ss_pred cccccccccccccccCCCCCcccccCCCHHHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCC
Q 003637 393 ADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPS 472 (806)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~ 472 (806)
.+.. ....+++++.+.|+++++.+++|++|++||||+||||++||+||+|+||||+.+..++
T Consensus 251 ~~~~------------------~~~~~t~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~ 312 (682)
T COG1241 251 LDKR------------------EEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPD 312 (682)
T ss_pred ccch------------------hhccCCHHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCC
Confidence 6543 1347899999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccc
Q 003637 473 GASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEF 552 (806)
Q Consensus 473 ~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEi 552 (806)
|+++||++||||+||||||||||++++++.+||++||+|++++++||||++++|+.+|+|++++|||++||+||||||||
T Consensus 313 g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 313 GTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred CcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCCh
Q 003637 553 DKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADE 632 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~ 632 (806)
|||+..++++|||+||||+|+|+|||++++||+||+||||+||.+|||+..+++.+||+||++|+|||||+|++.|.+++
T Consensus 393 dKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~ 472 (682)
T COG1241 393 DKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDE 472 (682)
T ss_pred cCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcc--------CCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003637 633 QTDRRLAKHIVSLHFENPENSE--------QGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSK 704 (806)
Q Consensus 633 ~~d~~la~~il~~~~~~~~~~~--------~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~ 704 (806)
+.|+.+|+|++..|........ ...-+.++|++||.|||+++.|.++++|.+.|.++|+.||+.+.-.+ ..
T Consensus 473 ~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~-~~ 551 (682)
T COG1241 473 EKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVE-EK 551 (682)
T ss_pred cchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcccccc-cc
Confidence 9999999999999975432110 01116889999999999999999999999999999999999754322 45
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHHHhhhccCCCCCchhhHhhhCCchhHHHHHHHHHHH
Q 003637 705 KVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENMVSS 784 (806)
Q Consensus 705 ~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl~~~~~~~~~g~~d~~~~~~g~s~~~~~~~~~~~~~ 784 (806)
.++++|+||||++||||+|+|||++++.|+++|+.+|++++..++.+.++|+.+|.+|.+.+.+|.+.++++..+.+++.
T Consensus 552 ~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~~~~~~~~~~~~~~~~~~ 631 (682)
T COG1241 552 RTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIEPGKSKSKRDKIEKVLDI 631 (682)
T ss_pred CcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCCceehhhhccCCcchhhhhHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003637 785 TRNIIMEK 792 (806)
Q Consensus 785 i~~~~~~~ 792 (806)
++++.+++
T Consensus 632 i~e~~~~~ 639 (682)
T COG1241 632 IKELVERS 639 (682)
T ss_pred HHHHhhcc
Confidence 98765544
No 5
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-117 Score=948.72 Aligned_cols=603 Identities=36% Similarity=0.639 Sum_probs=545.8
Q ss_pred CHHHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhccCHHHHHHHHhCHHHHHHHH
Q 003637 126 SVQDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIF 205 (806)
Q Consensus 126 ~~~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~L~~~l~~~P~e~l~~~ 205 (806)
+.++++.+|++|++.|+... .++|+++|+..+...+++|+|++.||.+||.+|++.|.++|.++||+|
T Consensus 24 ~~~~v~~~fkefir~f~~~~------------~f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~f 91 (729)
T KOG0481|consen 24 RKSQVKTKFKEFIRQFRTGT------------DFKYRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLF 91 (729)
T ss_pred cHHHHHHHHHHHHHHhcccc------------ccchHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHH
Confidence 46789999999999998742 388999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCccc------CCcEEEEEeecCCccCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEecccCccC
Q 003637 206 DIVLMDIVSLINPLF------EKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYS 279 (806)
Q Consensus 206 d~al~~~~~~~~~~~------~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~ 279 (806)
++|+.++..++.-.. ..++||-+..-..+.++|+|+++++.|||.|.|||+.+|.|+.+.+....+|.+|.+..
T Consensus 92 EeAa~~Vad~i~~~~~~~E~~~~d~Qv~L~sda~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~ 171 (729)
T KOG0481|consen 92 EEAAKEVADEITRPRPSGEEVLHDIQVLLTSDANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTR 171 (729)
T ss_pred HHHHHHHHhhhcCCCcCCCccceeeEEEEecCCCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccc
Confidence 999999888764322 23689988888889999999999999999999999999999999999999999999987
Q ss_pred CceEecCC--cccCCcccC-----ccccCCCCceeEeccccccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCC
Q 003637 280 DPIVVDRG--RINEPSTCL-----KQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGK 352 (806)
Q Consensus 280 ~~~~~~~~--~~~~P~~C~-----~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~ 352 (806)
..+....+ -+..|..|. .+.|. .+||.+.+++|.|+|+|.+||||.|+.+|.|++||++.++++..|++++.
T Consensus 172 ~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp-~DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~kvv 250 (729)
T KOG0481|consen 172 PNVIMRPGLEGYALPRKCDTPQAGKPKCP-LDPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNKVV 250 (729)
T ss_pred cceecCCCccccccccccCCcccCCCCCC-CCCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhcccc
Confidence 53433333 478999998 56787 57899999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEEEeeeeccC-CCcccccceeeEEEEEEEEEEcccccccccccccccCCCCCcccccCCCHHHHHHHHHHh
Q 003637 353 PGDRVEVTGIYRAMSVRVG-PTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELS 431 (806)
Q Consensus 353 pGd~V~VtGIl~~~~~~~~-~~~~~~~~~~~~yi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 431 (806)
||.||+|+|||.+...... ...+..-++-.+||.+++|+...... .. ..-..||++|.+.|++++
T Consensus 251 PG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~s------------s~--~~~~~ft~eEEEeFk~la 316 (729)
T KOG0481|consen 251 PGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGS------------SR--SSATMFTPEEEEEFKKLA 316 (729)
T ss_pred CCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCc------------cc--cCcccCChhHHHHHHHHh
Confidence 9999999999986543211 11233456788999999997543320 00 012368999999999999
Q ss_pred cChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 432 RQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 432 ~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
..+++|++|.+||||+|||++++|+||+|+||||..|.+++|...||+|||||.|||||+||||++++.+.+|-++||+|
T Consensus 317 ~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSG 396 (729)
T KOG0481|consen 317 ASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSG 396 (729)
T ss_pred cCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEE
Q 003637 512 KGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLA 591 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIA 591 (806)
+|++++||||++.+|+.+.+|.+|.|+++|||||||||||||||.++++.++||+||||+|+|+|||++++||.||+|+|
T Consensus 397 KGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLA 476 (729)
T KOG0481|consen 397 KGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLA 476 (729)
T ss_pred CCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCC------CCccCCCCCHHHHHH
Q 003637 592 CANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENP------ENSEQGVLDLATLTA 665 (806)
Q Consensus 592 AaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~------~~~~~~~i~~~~Lk~ 665 (806)
|+||.+||||..++..+||++.+.++||||+||++.|..+++.|..||+|+++.|.... +......++.+.||+
T Consensus 477 AANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~Kr 556 (729)
T KOG0481|consen 477 AANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKR 556 (729)
T ss_pred hcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998531 123567899999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCC---CCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGN---FPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~---~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
||.|||.++.|.|+++|.+.|.+.|+.||+.-. ...+...++|||+||||++||+++++|+|+++..+++.||.||+
T Consensus 557 yI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~ 636 (729)
T KOG0481|consen 557 YIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEAL 636 (729)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHH
Confidence 999999999999999999999999999997421 12245578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 003637 743 RLLEVAMQQSATD 755 (806)
Q Consensus 743 ~l~~~sl~~~~~~ 755 (806)
+||+.|..+++..
T Consensus 637 RLF~vSTmdAa~~ 649 (729)
T KOG0481|consen 637 RLFQVSTMDAASQ 649 (729)
T ss_pred HHHhHhhHHHHhc
Confidence 9999999887754
No 6
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=4.9e-116 Score=938.09 Aligned_cols=593 Identities=40% Similarity=0.642 Sum_probs=521.0
Q ss_pred CCHHHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhccCH--HHHHHHHhCHHHHH
Q 003637 125 ISVQDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDS--DLYNKMVRYPLEVL 202 (806)
Q Consensus 125 i~~~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~--~L~~~l~~~P~e~l 202 (806)
+++..-+++.+.|+.+|.+.+. ..+|+++|.++.+++...+.||++||..|+. +|...|..+-..+.
T Consensus 8 ~D~~~dk~~~~~fl~e~~e~~~-----------~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~ 76 (721)
T KOG0482|consen 8 IDYAADKNKIKKFLDEFYEDNE-----------LGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYV 76 (721)
T ss_pred chhhhhhHHHHHHHHhhhccCc-----------hhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3455567889999999987532 2499999999999999999999999999983 67888888999999
Q ss_pred HHHHHHHHHHHHhh-------------------------Ccc-------cCC----cEEEEEeec--CCccCCCCCCccC
Q 003637 203 AIFDIVLMDIVSLI-------------------------NPL-------FEK----HVQVRIYNL--KSSTAMRNLNPSD 244 (806)
Q Consensus 203 ~~~d~al~~~~~~~-------------------------~~~-------~~~----~i~vr~~nl--~~~~~iR~L~~~~ 244 (806)
.+|..++.+++... .|. |++ .+.+.|.-. .+..++|++++.+
T Consensus 77 ~lf~~~vdellp~~~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~ 156 (721)
T KOG0482|consen 77 ELFSDAVDELLPEPTGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADH 156 (721)
T ss_pred HHHHHHHHHhcCCcccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhh
Confidence 99988887764321 121 111 333333322 2567899999999
Q ss_pred CCceEEEEEEEEEecccceeEEEEEEEecccCccCCceEecCCcccCCcccCccccCC---CCceeEeccccccceeeEE
Q 003637 245 IEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPIVVDRGRINEPSTCLKQECLA---KNSMTLVHNRCRFADKQIV 321 (806)
Q Consensus 245 igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~~~~~~~~~~~P~~C~~~~C~~---~~~~~l~~~~s~f~d~Q~I 321 (806)
||+||+|+|+|||+|+|||.+.+++|+|..||.+++ +++++..|+++..|+++.|.. ++.+.+....|+|+.||++
T Consensus 157 iG~LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~y-QeV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~ 235 (721)
T KOG0482|consen 157 IGSLVTVRGIVTRVSDVKPSMVVATYTCDQCGAETY-QEVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEV 235 (721)
T ss_pred ccceEEEEEEEEeccccccceEEEEEecccccHhhh-ccccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhh
Confidence 999999999999999999999999999999999999 788888999999999999974 3457788999999999999
Q ss_pred EEeeCCCCCCCCCCCeEEEEEecccccccCCCCCEEEEEEEEEeeeeccCCCcccccceeeEEEEEEEEEEccccccccc
Q 003637 322 RLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVE 401 (806)
Q Consensus 322 kiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd~V~VtGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~~~~~~~~~~ 401 (806)
|+||.++++|.|.+||+++|+++++++.+|+|||.|.|+||+.+.+.. +.+.-....+-++|++|..|.+.+++.
T Consensus 236 kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pyt-Gfr~~~aGLladtYLeAh~v~~~nk~~---- 310 (721)
T KOG0482|consen 236 KMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYT-GFRALKAGLLADTYLEAHRVVQINKKY---- 310 (721)
T ss_pred hHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchh-hHHHHHhhhHHHHHHHHhhhhhhcccc----
Confidence 999999999999999999999999999999999999999999876542 222211224568999999877665541
Q ss_pred ccccccCCCCCcccccCCCHHHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccc
Q 003637 402 DAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN 481 (806)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in 481 (806)
..++++.+...++.++....++|++|+.||||+||||++|||++||+|+||+.+...+|+++||+||
T Consensus 311 -------------~~~~~~~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdIN 377 (721)
T KOG0482|consen 311 -------------DNIEKTGELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDIN 377 (721)
T ss_pred -------------ccccccccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeeccee
Confidence 1122233333344556677899999999999999999999999999999999999999999999999
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHH
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARS 561 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~ 561 (806)
|||+||||++||||+++|.+++||++||+|+|++.+||||++.||+-+||.++|.|+|++||+|||||||||||.+.+|.
T Consensus 378 icLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 378 ICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred EEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHH
Q 003637 562 MLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKH 641 (806)
Q Consensus 562 ~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~ 641 (806)
++||+||||+|+|+|||+.++||+||+||||+||.+||||++.++.+||+||.+|+||||++|++.|.|+.+.|..||+|
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCC-CCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 642 IVSLHFENP-ENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 642 il~~~~~~~-~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
|...|..+. +...+.+++.+.||.||.+||+ ..|.++++..++|..+|++||+... +.+.....|+|.|.+++|+
T Consensus 538 iTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~Rrea~---~~~~~t~ttpRtLL~IlRl 613 (721)
T KOG0482|consen 538 ITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVELRREAR---SSKDFTYTTPRTLLGILRL 613 (721)
T ss_pred hHhhhccCCCCCccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhh---ccCCCcccCHHHHHHHHHH
Confidence 999987542 3357889999999999999997 6899999999999999999999753 3345567899999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHHHHHh
Q 003637 721 SEALARIRLSELVEKHDVEEAFRLLEVAMQQ 751 (806)
Q Consensus 721 a~a~A~l~~~~~V~~~Dv~~ai~l~~~sl~~ 751 (806)
+.|+|+|++++.|.++||.||++||+.+...
T Consensus 614 s~AlarLRls~~V~~~DV~EALRLme~sK~s 644 (721)
T KOG0482|consen 614 STALARLRLSDSVEEDDVNEALRLMEMSKDS 644 (721)
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHhhhcc
Confidence 9999999999999999999999999987543
No 7
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=8.1e-110 Score=907.76 Aligned_cols=599 Identities=36% Similarity=0.628 Sum_probs=552.8
Q ss_pred EEccCCCH-HHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhccCHHHHHHHHhCH
Q 003637 120 VWGTNISV-QDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYP 198 (806)
Q Consensus 120 ~~g~~i~~-~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~L~~~l~~~P 198 (806)
-|-+...+ .++..+|++||.+|.+. .+...|...|++|...+..+|.|++.||..-.+.|+.++.+.|
T Consensus 150 e~v~~~~~r~~i~~~fk~fl~~y~d~-----------~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap 218 (854)
T KOG0477|consen 150 EWVSMDGVRREIARRFKNFLREYVDE-----------NGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAP 218 (854)
T ss_pred HHHhccchhhHHHHHHHHHHHHHhcc-----------cccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhH
Confidence 46666666 57899999999999874 3457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCccc---CCcEEEEEeecCCccCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEeccc
Q 003637 199 LEVLAIFDIVLMDIVSLINPLF---EKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVC 275 (806)
Q Consensus 199 ~e~l~~~d~al~~~~~~~~~~~---~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C 275 (806)
.+++.+|+.++.+.+....|.| ..+|+||+.++|....+|.|+..|+|+||.+.|+|||.|.|+|.+....|.|.+|
T Consensus 219 ~e~l~I~dr~a~~~v~~~~p~yeri~~~ihvris~lP~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC 298 (854)
T KOG0477|consen 219 EEMLEIFDRAALEVVLLHYPNYERIHNEIHVRISDLPVCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKC 298 (854)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhcccceeeeeecCCccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhh
Confidence 9999999999999999988876 5689999999999999999999999999999999999999999999999999999
Q ss_pred CccCCceEecCCcccCCcccCccccCCCCceeEeccccccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCCCCC
Q 003637 276 GYYSDPIVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGD 355 (806)
Q Consensus 276 ~~~~~~~~~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd 355 (806)
|....|..++......|..|++ |.++++|.++.+...|.+||+|+|||.|..+|.|.+||+.+|+|..||||.|||||
T Consensus 299 ~~vlgPF~qs~n~evkp~~C~~--cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGd 376 (854)
T KOG0477|consen 299 GFVLGPFVQSSNSEVKPGSCPE--CQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGD 376 (854)
T ss_pred CCccCceeeccCceeCCCCCcc--ccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCc
Confidence 9998877777777889999966 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeeeeccCCCcccccceeeEEEEEEEEEEcccccccccccccccCCCCCcccccCCCHHHHHHHHHHhcChh
Q 003637 356 RVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPN 435 (806)
Q Consensus 356 ~V~VtGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 435 (806)
.|.|||||+.. ....-..++..++|.+.|+|+||.+.+.. + ...++++|+.+.|.++++++.
T Consensus 377 EievTGIy~nn-~d~sLN~kngFpvfatvi~ANhV~~k~~~-~----------------~~~~ltded~k~i~~lskd~~ 438 (854)
T KOG0477|consen 377 EIEVTGIYTNN-FDGSLNTKNGFPVFATVIEANHVVKKDGK-F----------------DVDELTDEDFKEIWELSKDPP 438 (854)
T ss_pred ceEEeeeeccc-ccccccccCCccccceeheehhhhhhccc-c----------------chhHHhHHHHHHHHHHhcCcc
Confidence 99999999843 22223335567899999999999765432 1 123678999999999999999
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS 515 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~ 515 (806)
+-+++++||||+||||++||.|++|+|+||.+++...+.++||++||||+|||||||||++||+++.++|++||+|.|++
T Consensus 439 i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS 518 (854)
T KOG0477|consen 439 IKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS 518 (854)
T ss_pred HHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 516 AVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 516 ~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
++|||+.+.|+|-++||.+|+|||+|||+|||||||||||++.+|..+|||||||.|+|+||||.++|+++|++|||+||
T Consensus 519 avGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 519 AVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred ccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCc-------------cCCCCCHHH
Q 003637 596 SGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENS-------------EQGVLDLAT 662 (806)
Q Consensus 596 ~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~-------------~~~~i~~~~ 662 (806)
.+||||+.++..+|++|..+++||||+++++.|..++..|+.+|+.++..|...+... .-.+++.+.
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~l 678 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQEL 678 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHH
Confidence 9999999999999999999999999999999999999999999999999997654321 124689999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 663 LTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 663 Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
|++||.|||.++.|.|.+--.+.+...|..||+.....| +++||+|.+|++||+++|+|+|++++.|+.+|+..||
T Consensus 679 LrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tG----s~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI 754 (854)
T KOG0477|consen 679 LRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATG----SLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAI 754 (854)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccC----CchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHH
Confidence 999999999999999999999999999999999875444 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 003637 743 RLLEVAMQQSA 753 (806)
Q Consensus 743 ~l~~~sl~~~~ 753 (806)
+.+..|...+.
T Consensus 755 ~v~ldSfi~aQ 765 (854)
T KOG0477|consen 755 RVMLDSFISAQ 765 (854)
T ss_pred HHHHHHHHHHH
Confidence 99988765443
No 8
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=4e-108 Score=888.72 Aligned_cols=587 Identities=38% Similarity=0.605 Sum_probs=522.0
Q ss_pred HHHHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhccCHHHHHHHHhCHHHHHHHHHH
Q 003637 128 QDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDI 207 (806)
Q Consensus 128 ~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~L~~~l~~~P~e~l~~~d~ 207 (806)
.+..+.|.+||.++.+ ...|.+.|..|++.....|.||++||..|++++|..|+.+|.+.++.|+.
T Consensus 11 ~e~~r~f~efLd~~~D--------------~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~ 76 (818)
T KOG0479|consen 11 RERVRDFIEFLDDEED--------------ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFED 76 (818)
T ss_pred HHHHHHHHHHhcchhh--------------hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHH
Confidence 3444555556555533 35899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCccc---CCcEEEEEeec--CCccCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEecccCccCCce
Q 003637 208 VLMDIVSLINPLF---EKHVQVRIYNL--KSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPI 282 (806)
Q Consensus 208 al~~~~~~~~~~~---~~~i~vr~~nl--~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~~ 282 (806)
|+.+++..+.+.+ ...++|-|... ....++|.|.+.++|+|||++||||+||-|||++.+.++.|...+...+.-
T Consensus 77 AL~~~~~~~d~~~~~~~~~~~vGfeGsFG~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~ 156 (818)
T KOG0479|consen 77 ALTDAASRIDDVYAKVKELFFVGFEGSFGNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERD 156 (818)
T ss_pred HHHHHHhcccchhhhhccceEEEeeeeccccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhh
Confidence 9999988877644 33566666432 356789999999999999999999999999999999999999998776533
Q ss_pred EecCCc-ccCC--cccCccccCCCCceeEeccccccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCCCCCEEEE
Q 003637 283 VVDRGR-INEP--STCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEV 359 (806)
Q Consensus 283 ~~~~~~-~~~P--~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd~V~V 359 (806)
+.+-.. -..| ..-|. .-...|++......|+|.|+|.|.|||+||..|+|++||+|+|+|.+||||+|||||||.|
T Consensus 157 Y~D~T~~~~~p~~svYPT-~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDRV~i 235 (818)
T KOG0479|consen 157 YRDATMLTTLPTGSVYPT-RDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDRVNI 235 (818)
T ss_pred hcchheecccccCCcCCc-cCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCeeEE
Confidence 322111 1112 22221 2334678888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeeccCCCcccccceeeEEEEEEEEEEcccccccccccccccCCCCCcccccCCCHHHHHHHHHHhcChhHHHH
Q 003637 360 TGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYET 439 (806)
Q Consensus 360 tGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 439 (806)
.|+|++.+.+. ..+..+.|++.|-+++|+...+. ....|+.+++..|+++++..|+|+.
T Consensus 236 vG~yr~Lp~k~---~g~tsg~FRTvliaNni~~l~ke------------------~~~~~t~~Di~~i~klsk~kdiFdl 294 (818)
T KOG0479|consen 236 VGIYRSLPGKS---NGNTSGTFRTVLIANNIELLSKE------------------AAPDFTDEDIRNIKKLSKKKDIFDL 294 (818)
T ss_pred EEEEeeccCcc---CCcccceeEEEEEeccHHhhccc------------------ccccCChhhHHHHHHHHhcCCHHHH
Confidence 99999887532 23456789999999999876554 1246899999999999999999999
Q ss_pred HHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccc
Q 003637 440 LTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGL 519 (806)
Q Consensus 440 l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~gl 519 (806)
|+.|+||+||||+.||+||||+|+||+.+++.+|.++||+|||||+|||.|+||||+|++.+.+|+++-|+|+|++.+||
T Consensus 295 La~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGL 374 (818)
T KOG0479|consen 295 LARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGL 374 (818)
T ss_pred HhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCC
Q 003637 520 TAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSR 599 (806)
Q Consensus 520 ta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~ 599 (806)
||++.-|.++||..+|+|+++|||+||+||||||||+.-+|.++||+||||+|+|+||||.++||+||+||||+||.+|+
T Consensus 375 TAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~ 454 (818)
T KOG0479|consen 375 TAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQ 454 (818)
T ss_pred eeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhc-CCC---------------------------
Q 003637 600 YNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFE-NPE--------------------------- 651 (806)
Q Consensus 600 ~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~-~~~--------------------------- 651 (806)
|+..++..+||.||.+|+|||||+|+++|..+.+.|..|++|+++.|.. .+.
T Consensus 455 Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et 534 (818)
T KOG0479|consen 455 YDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKET 534 (818)
T ss_pred cCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999932 110
Q ss_pred ---------------CccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHH
Q 003637 652 ---------------NSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIES 716 (806)
Q Consensus 652 ---------------~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Les 716 (806)
....+.++.+++|+||.|||..++|.|+++|.++|.+.|..||+.+... +.....++|+|.||.
T Consensus 535 ~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~-d~~rt~PiTARtLET 613 (818)
T KOG0479|consen 535 EVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRK-DQERTSPITARTLET 613 (818)
T ss_pred hhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhcccccc-ccccccCCcHHHHHH
Confidence 0124668899999999999999999999999999999999999976443 556778999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHHHh
Q 003637 717 LIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQ 751 (806)
Q Consensus 717 lirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl~~ 751 (806)
|||||.|+|+++++.+|+..|.+.|+.|++.++..
T Consensus 614 lIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 614 LIRLATAHAKARLSKVVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred HHHHHHHHHHhhhcceeehhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999876
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=3.1e-93 Score=821.44 Aligned_cols=504 Identities=48% Similarity=0.820 Sum_probs=454.1
Q ss_pred ccCCCCCCccCCCceEEEEEEEEEecccceeEEEEEEEecccCccCCceEecCCcccCCcccCccccCCCCceeEecccc
Q 003637 234 STAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDPIVVDRGRINEPSTCLKQECLAKNSMTLVHNRC 313 (806)
Q Consensus 234 ~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~~~~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s 313 (806)
+.++|+|++.+|||||+|+|+|+|+|.|+|++++++|+|..|++.++ +.++.+++.+|..|+++.|+++++|.++++.|
T Consensus 2 ~~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~-~~~~~~~~~~p~~C~~~~C~~~~~f~l~~~~s 80 (509)
T smart00350 2 PSSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLG-PEIQSGRETEPTVCPPRECQSPTPFSLNHERS 80 (509)
T ss_pred CCCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEe-EEecCCcccCCCcCCCCcCCCCCceEeccCCC
Confidence 46889999999999999999999999999999999999999999988 66778899999999888899998999999999
Q ss_pred ccceeeEEEEeeCCCCCCCCCCCeEEEEEecccccccCCCCCEEEEEEEEEeeeeccCCCcccccceeeEEEEEEEEEEc
Q 003637 314 RFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKA 393 (806)
Q Consensus 314 ~f~d~Q~IkiQE~~~~~p~G~~Prti~v~l~~dLvd~~~pGd~V~VtGIl~~~~~~~~~~~~~~~~~~~~yi~~~~i~~~ 393 (806)
+|+|||+|||||.|+++|.|++||+|+|+|++||||+|+|||+|.|||||++.+........+....|.+|+++++|++.
T Consensus 81 ~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~ 160 (509)
T smart00350 81 TFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKL 160 (509)
T ss_pred eEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEc
Confidence 99999999999999999999999999999999999999999999999999976421111111223458999999999876
Q ss_pred ccccccccccccccCCCCCcccccCCCHHHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCC
Q 003637 394 DKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSG 473 (806)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~ 473 (806)
+..... ++.. .....|+++++++|.++++++++|++|++||+|.|+||+.+|+|++++|+||..+...+|
T Consensus 161 ~~~~~~-------~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~ 230 (509)
T smart00350 161 DYKRSF-------EDCS---FSVQSLSDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDG 230 (509)
T ss_pred cccccc-------cccc---cccccCCHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCC
Confidence 543110 0000 001358999999999999999999999999999999999999999999999998888899
Q ss_pred CccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccc
Q 003637 474 ASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 474 ~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEid 553 (806)
.++|+++||||+|+||||||++|++++++++|.+|++|.+.+.+|+++.+.+++.+|+|.+++|++++|++|+||||||+
T Consensus 231 ~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~ 310 (509)
T smart00350 231 MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFD 310 (509)
T ss_pred ccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechh
Confidence 99999999999999999999999999999999999999988999999988888889999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChH
Q 003637 554 KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQ 633 (806)
Q Consensus 554 km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~ 633 (806)
+|++..|.+|+++||+|++++.|+|+..+++++++||||+||.+|+|+..+++.+|++||++++|||||+|++.|+++++
T Consensus 311 ~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~ 390 (509)
T smart00350 311 KMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEE 390 (509)
T ss_pred hCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC---CccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 003637 634 TDRRLAKHIVSLHFENPE---NSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITAT 710 (806)
Q Consensus 634 ~d~~la~~il~~~~~~~~---~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it 710 (806)
.|.+|++|+++.|..... ......++.+.|++||.|||+++.|.+++++.++|.++|.++|+.+.... ....+++|
T Consensus 391 ~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~-~~~~~~~t 469 (509)
T smart00350 391 RDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE-ARSSIPIT 469 (509)
T ss_pred HHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc-cccccCcC
Confidence 999999999998764321 12335799999999999999989999999999999999999998643110 02357899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHH
Q 003637 711 PRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAM 749 (806)
Q Consensus 711 ~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl 749 (806)
+|+|++++|+|+|+|+|++++.|+.+||.+|++|++.|+
T Consensus 470 ~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 470 VRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999875
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=1.2e-68 Score=585.25 Aligned_cols=325 Identities=57% Similarity=0.890 Sum_probs=271.0
Q ss_pred HHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHH
Q 003637 423 KIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 423 ~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~ 502 (806)
|+++|.++++.+++|++|++||||+|+|++.+|+||+|+|+||+.+..++|...|+++||||+||||||||+|+++++++
T Consensus 1 d~~~i~~l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 1 DEEKIKELSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp THHHHHCCCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred CHHHHHHHhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 35778999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeee
Q 003637 503 SPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIAS 582 (806)
Q Consensus 503 ~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~ 582 (806)
+||++|++|++++.+|||+.+.+++.+|+|.+++|++++||+|||||||||+|+.+++.+|||+||||+++|+|+|+.++
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCC---C-Ccc--CC
Q 003637 583 LNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENP---E-NSE--QG 656 (806)
Q Consensus 583 l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~---~-~~~--~~ 656 (806)
++++|+|+||+||..|+|++..++.+|+++|++|++||||+|++.|.++++.|..+++|+++.|.... . ... ..
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987553 1 111 25
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHh
Q 003637 657 VLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKH 736 (806)
Q Consensus 657 ~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~ 736 (806)
.++.++|++||.|||+++.|.|+++|.++|.++|+.+|+.... .....++|+|+||+|||+|+|+|||+++++|+++
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~---~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~ 317 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKS---NNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEE 317 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHC---HSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccc---cccccccchhhHHHHHHHHHHHHHHhccCceeHH
Confidence 8999999999999998899999999999999999999986510 1345789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 003637 737 DVEEAFRLLEVAMQ 750 (806)
Q Consensus 737 Dv~~ai~l~~~sl~ 750 (806)
|+.+|+++++.++.
T Consensus 318 Dv~~Ai~L~~~Sl~ 331 (331)
T PF00493_consen 318 DVEEAIRLFEESLK 331 (331)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999873
No 11
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.93 E-value=8.5e-25 Score=243.30 Aligned_cols=224 Identities=23% Similarity=0.314 Sum_probs=185.6
Q ss_pred hcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee
Q 003637 444 LAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV 523 (806)
Q Consensus 444 i~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~ 523 (806)
....++|+...-..+.-.+- . .+..+.+|||.|++||||..+|++||+.++|. +++|++++|.++.
T Consensus 139 ~~~~liG~S~am~~l~~~i~-k---------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~----~~PFVavNcaAip 204 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIA-K---------VAPSDASVLITGESGTGKELVARAIHQASPRA----KGPFIAVNCAAIP 204 (464)
T ss_pred ccCCceecCHHHHHHHHHHH-H---------HhCCCCCEEEECCCCCcHHHHHHHHHhhCccc----CCCceeeecccCC
Confidence 45667776655544432111 1 23456799999999999999999999999998 8999999999876
Q ss_pred -----------ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEe
Q 003637 524 -----------TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLAC 592 (806)
Q Consensus 524 -----------~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAA 592 (806)
.++.+||...-+.|.|..|+||++|||||..|+.+.|..|+.+++++++. +.|...+.+.+++||||
T Consensus 205 ~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~--rvG~~~~i~vdvRiIaa 282 (464)
T COG2204 205 ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFE--RVGGNKPIKVDVRIIAA 282 (464)
T ss_pred HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeE--ecCCCcccceeeEEEee
Confidence 45667888888889999999999999999999999999999999999987 88999999999999999
Q ss_pred cCCC------CCCCC----CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHH
Q 003637 593 ANPS------GSRYN----PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLAT 662 (806)
Q Consensus 593 aNp~------~g~~~----~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~ 662 (806)
||.. .|+|+ +++++. .+.+||...++-|+. .|++|++........
T Consensus 283 T~~dL~~~v~~G~FReDLyyRLnV~-~i~iPpLRER~EDIp-------------~L~~hfl~~~~~~~~----------- 337 (464)
T COG2204 283 TNRDLEEEVAAGRFREDLYYRLNVV-PLRLPPLRERKEDIP-------------LLAEHFLKRFAAELG----------- 337 (464)
T ss_pred cCcCHHHHHHcCCcHHHHHhhhccc-eecCCcccccchhHH-------------HHHHHHHHHHHHHcC-----------
Confidence 9986 67887 788888 899999998888888 899999985443221
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 003637 663 LTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHD 737 (806)
Q Consensus 663 Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~D 737 (806)
...+.++++|.+.|..| .|||| +|+|+++++.+...+. .+.|+.+|
T Consensus 338 ----------~~~~~~s~~a~~~L~~y--------~WPGN--------VREL~N~ver~~il~~---~~~i~~~~ 383 (464)
T COG2204 338 ----------RPPKGFSPEALAALLAY--------DWPGN--------VRELENVVERAVILSE---GPEIEVED 383 (464)
T ss_pred ----------CCCCCCCHHHHHHHHhC--------CCChH--------HHHHHHHHHHHHhcCC---ccccchhh
Confidence 12358999999999977 99999 9999999999877665 55566555
No 12
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-24 Score=240.10 Aligned_cols=191 Identities=25% Similarity=0.369 Sum_probs=166.0
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee-----------ecCCCCCcccc-ccccccccC
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV-----------TKDPETGETVL-ESGALVLSD 543 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~-----------~k~~~~ge~~l-e~Gal~lAd 543 (806)
++.+.+|||.|++||||..+|++||+.++|. .++|.+++|.|+. +++.+||...- ++|.+.+|+
T Consensus 265 A~tdstVLi~GESGTGKElfA~~IH~~S~R~----~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~ 340 (560)
T COG3829 265 AKTDSTVLILGESGTGKELFARAIHNLSPRA----NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELAN 340 (560)
T ss_pred cCCCCcEEEecCCCccHHHHHHHHHhcCccc----CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceeecc
Confidence 4456799999999999999999999999998 8999999999986 55667777654 889999999
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCC
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLP 613 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp 613 (806)
+|++|+|||..|+...|+.|+.+++++.|. +.|.....+.+++||||+|.. .|+|+ |++++. ++.||
T Consensus 341 gGTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~-~i~iP 417 (560)
T COG3829 341 GGTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI-PITIP 417 (560)
T ss_pred CCeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee-eecCC
Confidence 999999999999999999999999999987 889999999999999999986 67776 788888 89999
Q ss_pred ccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 003637 614 PTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEM 693 (806)
Q Consensus 614 ~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~l 693 (806)
|...+.-|+. .|+++++..+...+. ...+.+++++.+.|.+|
T Consensus 418 PLReR~eDI~-------------~L~~~Fl~k~s~~~~---------------------~~v~~ls~~a~~~L~~y---- 459 (560)
T COG3829 418 PLRERKEDIP-------------LLAEYFLDKFSRRYG---------------------RNVKGLSPDALALLLRY---- 459 (560)
T ss_pred CcccCcchHH-------------HHHHHHHHHHHHHcC---------------------CCcccCCHHHHHHHHhC----
Confidence 8887777776 889999886544332 12246999999999987
Q ss_pred HhcCCCCCCCCcccccCHHHHHHHHHHHHH
Q 003637 694 RRRGNFPGSSKKVITATPRQIESLIRLSEA 723 (806)
Q Consensus 694 R~~~~~~gn~~~~~~it~R~Leslirla~a 723 (806)
+|||| +|+|+++|+.+.-
T Consensus 460 ----~WPGN--------VRELeNviER~v~ 477 (560)
T COG3829 460 ----DWPGN--------VRELENVIERAVN 477 (560)
T ss_pred ----CCCch--------HHHHHHHHHHHHh
Confidence 99999 9999999988764
No 13
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=9.4e-25 Score=238.52 Aligned_cols=219 Identities=26% Similarity=0.361 Sum_probs=184.2
Q ss_pred cccchhhhHHHHh--hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee-
Q 003637 447 NIWELDDVKKGLL--CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV- 523 (806)
Q Consensus 447 ~I~G~e~vK~~il--l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~- 523 (806)
.|+|+...-+.++ +.++ ++++.+|||.|++||||..+|++||+.++|. .++++.++|.|+.
T Consensus 224 ~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~----~kPfV~~NCAAlPe 287 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRR----DKPFVKLNCAALPE 287 (550)
T ss_pred cceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCccc----CCCceeeeccccch
Confidence 5666665555544 2222 4456799999999999999999999999998 8999999999986
Q ss_pred ----------ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEec
Q 003637 524 ----------TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACA 593 (806)
Q Consensus 524 ----------~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAa 593 (806)
+|+.+||...-+.|.|.+||||++|+|||..|+...|..|+.++++|.|. +.|...++..+++||||+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEie--RvG~~r~ikVDVRiIAAT 365 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIE--RVGGDRTIKVDVRVIAAT 365 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhccee--ecCCCceeEEEEEEEecc
Confidence 67888999999999999999999999999999999999999999999987 889999999999999999
Q ss_pred CCC------CCCCC----CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 594 NPS------GSRYN----PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 594 Np~------~g~~~----~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
|.. .|+|+ +++++. .+.+||...+.-|+. .||.|++........
T Consensus 366 NRDL~~~V~~G~FRaDLYyRLsV~-Pl~lPPLRER~~DIp-------------lLA~~Fle~~~~~~g------------ 419 (550)
T COG3604 366 NRDLEEMVRDGEFRADLYYRLSVF-PLELPPLRERPEDIP-------------LLAGYFLEKFRRRLG------------ 419 (550)
T ss_pred chhHHHHHHcCcchhhhhhccccc-ccCCCCcccCCccHH-------------HHHHHHHHHHHHhcC------------
Confidence 986 67876 788887 899999988888877 889999875432221
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 738 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv 738 (806)
+ -...|+.+|.+.|.+| .|||| +|+||++++.|..+| +..++.+|+
T Consensus 420 -------r--~~l~ls~~Al~~L~~y--------~wPGN--------VRELen~veRavlla----~~~~~~~d~ 465 (550)
T COG3604 420 -------R--AILSLSAEALELLSSY--------EWPGN--------VRELENVVERAVLLA----GRLTRRGDL 465 (550)
T ss_pred -------C--cccccCHHHHHHHHcC--------CCCCc--------HHHHHHHHHHHHHHh----cccCCCcce
Confidence 0 1236999999999987 99999 999999999988877 344555554
No 14
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.92 E-value=4.5e-24 Score=252.53 Aligned_cols=265 Identities=22% Similarity=0.248 Sum_probs=201.9
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc--------------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS-------------- 510 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~-------------- 510 (806)
+..|+|++.+|+++++.++.... .+|||.|+||||||++|+++++++|.-....
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~------------g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI------------GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC------------CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 45789999999999988886410 1799999999999999999999997311100
Q ss_pred --------------CCCcccccceeee---------ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHH
Q 003637 511 --------------GKGSSAVGLTAYV---------TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVM 567 (806)
Q Consensus 511 --------------g~~~~~~glta~~---------~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~M 567 (806)
..++....+.+.. .+....|++.+.+|.+..|++|||||||+++|++..|+.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 1122222222211 00112456778899999999999999999999999999999999
Q ss_pred hhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhh
Q 003637 568 EQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHF 647 (806)
Q Consensus 568 e~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~ 647 (806)
+++.+.+.+.|....+++++.+|||+||.++. ++++|++||++.+.+....+.+.+.+++.+.+....
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~eg~------------l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~ 218 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEEGD------------LRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDA 218 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCCCC------------CCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999987653 668999999988777666667777778777665321
Q ss_pred cCCCCccCCCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 648 ENPENSEQGVLDLATLTAYVSYARKHIH-PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 648 ~~~~~~~~~~i~~~~Lk~yi~~ar~~~~-p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
........-......+.++|..++.... ..+++++.++|.+++..++-. +.|....++|+|.|+|.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~-------------s~Ra~i~~~r~Ara~Aa 285 (633)
T TIGR02442 219 DPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD-------------GHRADIVMARAARALAA 285 (633)
T ss_pred CcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------------CccHHHHHHHHHHHHHH
Confidence 1100000001133477788899987543 378999999999998776432 36999999999999999
Q ss_pred HhcCCCCCHhhHHHHHHHHH
Q 003637 727 IRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 727 l~~~~~V~~~Dv~~ai~l~~ 746 (806)
|++++.|+.+||.+|+.++-
T Consensus 286 L~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 286 LDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HcCCCcCCHHHHHHHHHHHh
Confidence 99999999999999987764
No 15
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.91 E-value=1.3e-23 Score=229.03 Aligned_cols=264 Identities=22% Similarity=0.244 Sum_probs=191.5
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc---------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS--------- 515 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~--------- 515 (806)
+..|+|++.+|.++++.++... .-|+||.|+||+|||++++.++.+.|..--..+.++.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 3468999999999998888631 0189999999999999999999998641100000000
Q ss_pred ----------------------cccceeeeecC-----------CCCCccccccccccccCCceeeccccccCCHHHHHH
Q 003637 516 ----------------------AVGLTAYVTKD-----------PETGETVLESGALVLSDRGICCIDEFDKMSESARSM 562 (806)
Q Consensus 516 ----------------------~~glta~~~k~-----------~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~ 562 (806)
.+.+...+..+ -.+|++.+++|.+..|++|++||||++.|++..|+.
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~ 150 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDV 150 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHH
Confidence 01111100000 126788899999999999999999999999999999
Q ss_pred HHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCCh-HHHHHHHHH
Q 003637 563 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADE-QTDRRLAKH 641 (806)
Q Consensus 563 L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~-~~d~~la~~ 641 (806)
|+++|+++.+.+.+.|....+++++.++|+.||.++. ++++|++||.+.+.+ +++.. +...+|.++
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~------------l~~~LldRf~l~i~l-~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGLHAEI-RTVRDVELRVEIVER 217 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCC------------CCHHHHhhcceEEEC-CCCCCHHHHHHHHHh
Confidence 9999999988888899999999999999999987653 679999999876544 45543 655666665
Q ss_pred HHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 642 IVSLHFENPENSEQGVLDLATLTAYVSYARKHIH-PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 642 il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~-p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
..............-......+.+-|..+++.+. ..+++++.+++.+.+..+|.. +.|....++|.
T Consensus 218 ~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~-------------s~Ra~i~l~ra 284 (337)
T TIGR02030 218 RTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD-------------GLRGELTLNRA 284 (337)
T ss_pred hhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC-------------CCcHHHHHHHH
Confidence 3321100000000001112345566666766443 369999999999998877632 35999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHH
Q 003637 721 SEALARIRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 721 a~a~A~l~~~~~V~~~Dv~~ai~l~~ 746 (806)
|+|+|.+++++.|+.+||..+..+.-
T Consensus 285 ArA~Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 285 AKALAAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 16
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.91 E-value=2e-23 Score=238.46 Aligned_cols=260 Identities=20% Similarity=0.296 Sum_probs=191.1
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee---c-c------------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY---T-S------------ 510 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~---t-~------------ 510 (806)
.|+|++.+++++.+++.|+ .|++|+|+||+|||++++.++.++|.... . .
T Consensus 193 dv~Gq~~~~~al~~aa~~g--------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAAGG--------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred HhcCcHHHHhhhhhhccCC--------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 4679999999999888776 39999999999999999999998875210 0 0
Q ss_pred -----CCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 511 -----GKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 511 -----g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
..++....+++... ...+|.+...+|.+.+|++|+|||||+++++...+..|+++||++.+.|.+.|....+++
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~-~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKP-ALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred ccccccCCccccccccchh-hhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 11122222222110 112455668899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCC-CCCCCCCC-----ccc----ccccCCccccCcchhhhhhccCCChH--------HHHHHHHHHHHhh-
Q 003637 586 RTSVLACANPS-GSRYNPRL-----SVI----ENIHLPPTLLSRFDLIYLILDKADEQ--------TDRRLAKHIVSLH- 646 (806)
Q Consensus 586 ~~siIAAaNp~-~g~~~~~~-----~~~----~~i~lp~~LlsRFDli~il~d~~~~~--------~d~~la~~il~~~- 646 (806)
++++|||+||+ .|+|+... +.. ....|+.+|++|||+.+.+.+....+ ....+.+++...+
T Consensus 338 ~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~ 417 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKARE 417 (499)
T ss_pred CeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 99999999998 45664311 110 12379999999999998776543322 2233444443321
Q ss_pred -----hcCCC-CccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 647 -----FENPE-NSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 647 -----~~~~~-~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
+.... ...+..++...|++|. .+++++.+.|.+.|..+ .+|.|....++|+
T Consensus 418 ~q~~R~~~~~~~~~N~~l~~~~l~~~~---------~l~~~~~~~l~~a~~~~--------------~lS~R~~~rilrv 474 (499)
T TIGR00368 418 IQNIRYEKFANINKNADLNSDEIEQFC---------KLSAIDANDLEGALNKL--------------GLSSRATHRILKV 474 (499)
T ss_pred HHHHHhcCCCCCcccccCCHHHHHhhc---------CCCHHHHHHHHHHHHhc--------------CCCchHHHHHHHH
Confidence 11110 0125566777777652 37888989888887442 3678999999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 721 SEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 721 a~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
|.++|.|++++.|+.+||.+|+.+
T Consensus 475 ArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 475 ARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHhc
Confidence 999999999999999999999864
No 17
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.91 E-value=3.2e-23 Score=242.73 Aligned_cols=254 Identities=19% Similarity=0.226 Sum_probs=200.0
Q ss_pred hhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-eccCC-Ccccccceeee--ecCC
Q 003637 452 DDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-YTSGK-GSSAVGLTAYV--TKDP 527 (806)
Q Consensus 452 e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~t~g~-~~~~~glta~~--~k~~ 527 (806)
+.+|+|++|..+... .| ||||.|+||||||++++++|+.+++.. |..-. +.+.-.|...+ ....
T Consensus 1 ~~~~~Al~l~av~p~-----~g-------~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPS-----LG-------GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCC-----cc-------eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 467899998888652 11 999999999999999999999998741 22111 11111111110 0112
Q ss_pred CCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCccc
Q 003637 528 ETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVI 607 (806)
Q Consensus 528 ~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~ 607 (806)
.+|.|.+++|.+..|++|++||||++++++..|..|+++|+++.+++.+.|....++++|.+||++||...
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~--------- 139 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG--------- 139 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc---------
Confidence 35678899999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHH
Q 003637 608 ENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHP-KLSDEAAEEL 686 (806)
Q Consensus 608 ~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p-~ls~ea~~~L 686 (806)
.-.|+++|++||++.+.+...++.+...+|+++.+..... ........++++|..+++.... .+++++.++|
T Consensus 140 -~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~------~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l 212 (589)
T TIGR02031 140 -GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVF------RMNDELELLRGQIEAARELLPQVTISAEQVKEL 212 (589)
T ss_pred -cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhh------hcchhhHHHHHHHHHHHHhcCCccCCHHHHHHH
Confidence 2368899999999987787888888788888887642211 1123567889999999985543 7899999999
Q ss_pred HHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 003637 687 TRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 687 ~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 746 (806)
.+.+..++.. +.|....++|.|+|+|.+++++.|+.+||.+|+.++-
T Consensus 213 ~~~~~~~gv~-------------s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 213 VLTAASLGIS-------------GHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHcCCC-------------CccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 9998655322 2699999999999999999999999999999998764
No 18
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.90 E-value=6.9e-23 Score=222.91 Aligned_cols=255 Identities=20% Similarity=0.267 Sum_probs=185.9
Q ss_pred cccchhhhHHHHhhhhc--CCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCC-----------
Q 003637 447 NIWELDDVKKGLLCQLF--GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG----------- 513 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~--g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~----------- 513 (806)
.|+|++++|++++++++ |. .|+||.|+||||||++++.+++++|.-....+.+
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~~--------------~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPGI--------------GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HhCCHHHHHHHHHHHHhccCC--------------CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 57899999999997765 31 2999999999999999999999997521111110
Q ss_pred ---------------cccccceee----e-----ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhh
Q 003637 514 ---------------SSAVGLTAY----V-----TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 514 ---------------~~~~glta~----~-----~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
+...-.++. + .+...+|++.+++|.+..|++|++||||++.++++.|+.|+++|++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 000000000 0 0001147888999999999999999999999999999999999999
Q ss_pred cEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcC
Q 003637 570 QTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFEN 649 (806)
Q Consensus 570 q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~ 649 (806)
+.+++.+.|....+++++.++|++||.++. +++++++||.+.+.+....+.+...++.++...... .
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~NP~e~~------------l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~-~ 221 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDA-D 221 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCCcccCC------------CCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccc-c
Confidence 999888999999999999999999997543 779999999877655444444666666665432110 0
Q ss_pred CCC-----ccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHH
Q 003637 650 PEN-----SEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEAL 724 (806)
Q Consensus 650 ~~~-----~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~ 724 (806)
... ........+.+.......+ ...++++..++|.+....+|..+ +|....+++.|.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~a~~~~~---~V~v~~~~~~yi~~l~~~~~~~s-------------~Ra~i~l~~aA~a~ 285 (334)
T PRK13407 222 HDAFMAKWGAEDMQLRGRILGARARLP---QLKTPNTVLHDCAALCIALGSDG-------------LRGELTLLRAARAL 285 (334)
T ss_pred chhhhccccccccCCHHHHHHHHHhcC---CcccCHHHHHHHHHHHHHHCCCC-------------chHHHHHHHHHHHH
Confidence 000 0122344444444433332 24689999999999988877532 68888899999999
Q ss_pred HHHhcCCCCCHhhHHHHHHH
Q 003637 725 ARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 725 A~l~~~~~V~~~Dv~~ai~l 744 (806)
|.+++++.|+.+|+.++..+
T Consensus 286 A~l~Gr~~V~~~Di~~~~~~ 305 (334)
T PRK13407 286 AAFEGAEAVGRSHLRSVATM 305 (334)
T ss_pred HHHcCCCeeCHHHHHHHHHH
Confidence 99999999999999887643
No 19
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.90 E-value=7.9e-23 Score=222.75 Aligned_cols=257 Identities=21% Similarity=0.261 Sum_probs=189.2
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS----------- 515 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~----------- 515 (806)
.|+|++++|+++++.++... . -+|||.|++|||||++++.++++++..-...+.++.
T Consensus 18 ~ivGq~~~k~al~~~~~~p~---~---------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPK---I---------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred HHhChHHHHHHHHHhccCCC---C---------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 57899999999999988641 0 179999999999999999999999763221111111
Q ss_pred ----------------------cccceeee---------ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHH
Q 003637 516 ----------------------AVGLTAYV---------TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLH 564 (806)
Q Consensus 516 ----------------------~~glta~~---------~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~ 564 (806)
.+.+.+.. .+.-.+|.+.+++|.+..|++|++||||++.+++..|..|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 00010000 00012456677899999999999999999999999999999
Q ss_pred HHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 565 EVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 565 e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
++|+++.+++.+.|....+++++.++|+.||.++. +++.|++||.+.+.+-...+.+.+.+|.++...
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEGE------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCC------------CCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 99999998888999999999999999999998654 668999999877555443345777777776532
Q ss_pred hhhcCCCC-----ccCCCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHH
Q 003637 645 LHFENPEN-----SEQGVLDLATLTAYVSYARKHI-HPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLI 718 (806)
Q Consensus 645 ~~~~~~~~-----~~~~~i~~~~Lk~yi~~ar~~~-~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Lesli 718 (806)
... .+.. ........+.+.. +++.+ ...++++..++|.+....+|.. ++|....++
T Consensus 234 ~~~-~~~~~~~~~~~~~~~~~~~I~~----ar~~~~~V~v~~~~~~yi~~l~~~~~~~-------------s~Ra~i~l~ 295 (350)
T CHL00081 234 FDK-NPQEFREKYEESQEELRSKIVA----AQNLLPKVEIDYDLRVKISQICSELDVD-------------GLRGDIVTN 295 (350)
T ss_pred ccc-ChhhhhhhhccccccCHHHHHH----HHHhcCCCccCHHHHHHHHHHHHHHCCC-------------CChHHHHHH
Confidence 110 0000 0112233444433 33323 3479999999999998887653 369999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 719 RLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 719 rla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
+.|+|+|.+++++.|+.+||..+..+.
T Consensus 296 raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 296 RAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998765
No 20
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.90 E-value=4.8e-23 Score=234.21 Aligned_cols=262 Identities=23% Similarity=0.347 Sum_probs=184.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec----cCCCccccccee-
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT----SGKGSSAVGLTA- 521 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t----~g~~~~~~glta- 521 (806)
.++|+..+++++.+++.++ .|++|+|+||+|||++++.++.+.|..... ...-.+.+|+..
T Consensus 192 ~v~Gq~~~~~al~laa~~G--------------~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 192 DVIGQEQGKRGLEITAAGG--------------HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred EEECcHHHHhhhheeccCC--------------cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 5779999999988877766 399999999999999999999998752100 000011111110
Q ss_pred ------eeecCC---------CCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 522 ------YVTKDP---------ETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 522 ------~~~k~~---------~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
-.-+.+ .+|.+...+|.+.+|++|+|||||++.++...+..|+++||++.++|.+.|...+++++
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 000111 24567788999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCC-CCCCCCCc--cccc-----ccCCccccCcchhhhhhccCCCh---------HHHHHHHHHHHHhhhcC
Q 003637 587 TSVLACANPSG-SRYNPRLS--VIEN-----IHLPPTLLSRFDLIYLILDKADE---------QTDRRLAKHIVSLHFEN 649 (806)
Q Consensus 587 ~siIAAaNp~~-g~~~~~~~--~~~~-----i~lp~~LlsRFDli~il~d~~~~---------~~d~~la~~il~~~~~~ 649 (806)
|.+|||+||+. |.|..... ..++ -.|+.++++|||+.+.+...+.. +....+.+.+.......
T Consensus 338 f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q 417 (506)
T PRK09862 338 FQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQ 417 (506)
T ss_pred EEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHH
Confidence 99999999984 55542110 0111 26899999999998666433211 11122332332211000
Q ss_pred --CCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 003637 650 --PENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARI 727 (806)
Q Consensus 650 --~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l 727 (806)
.....+..+....+++|+ .+++++.+.+.++|.++ ++|.|....++|+|.++|.|
T Consensus 418 ~~r~~~~n~~l~~~~l~~~~---------~l~~~~~~~l~~~~~~~--------------~lS~Ra~~rlLrvARTiADL 474 (506)
T PRK09862 418 FKRQNKLNAWLDSPEIRQFC---------KLESEDARWLEETLIHL--------------GLSIRAWQRLLKVARTIADI 474 (506)
T ss_pred HHHHHHHhcccCHHHHHHHh---------CCCHHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHHHHH
Confidence 000113444555555542 27888888888776432 36799999999999999999
Q ss_pred hcCCCCCHhhHHHHHHHH
Q 003637 728 RLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 728 ~~~~~V~~~Dv~~ai~l~ 745 (806)
.+++.|+.+|+.+|+.+-
T Consensus 475 ~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 475 DQSDIITRQHLQEAVSYR 492 (506)
T ss_pred cCCCCCCHHHHHHHHHhh
Confidence 999999999999999775
No 21
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-21 Score=215.06 Aligned_cols=261 Identities=22% Similarity=0.279 Sum_probs=187.5
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee-----c------------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY-----T------------ 509 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~-----t------------ 509 (806)
.|.|++..|+|+..+..|| +|+||+||||||||++|+.+..++|.-.. +
T Consensus 180 DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~ 245 (490)
T COG0606 180 DVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHE 245 (490)
T ss_pred hhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccc
Confidence 5779999999999999998 49999999999999999999999987211 0
Q ss_pred -----cCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 510 -----SGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 510 -----~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
...+|.+-+-+++...- .+|.-..++|.+.+|++||+||||+-.......++|.+-||++.+.|++++...+++
T Consensus 246 ~~~~~~~rPFr~PHHsaS~~aL-vGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~yp 324 (490)
T COG0606 246 GCPLKIHRPFRAPHHSASLAAL-VGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYP 324 (490)
T ss_pred cCccceeCCccCCCccchHHHH-hCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEe
Confidence 11122222222221111 234467789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCCCCCC------Cccc----ccccCCccccCcchhhhhhccCCChH---------HHHHHHHHHHHh
Q 003637 585 ARTSVLACANPSGSRYNPR------LSVI----ENIHLPPTLLSRFDLIYLILDKADEQ---------TDRRLAKHIVSL 645 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~------~~~~----~~i~lp~~LlsRFDli~il~d~~~~~---------~d~~la~~il~~ 645 (806)
++|.++||+||+...++.. .+.. ..-+|..++++|+|+..-+.+..-.+ .-..+...+...
T Consensus 325 a~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~A 404 (490)
T COG0606 325 ARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKA 404 (490)
T ss_pred eeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHH
Confidence 9999999999986554421 1111 12378899999999986654432111 112222222221
Q ss_pred hhc---CCCCc-cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHH
Q 003637 646 HFE---NPENS-EQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLS 721 (806)
Q Consensus 646 ~~~---~~~~~-~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla 721 (806)
+.. ..... .+..++.+.|++|+ .++.++.+.|...- ++ ..+|+|.+..++|+|
T Consensus 405 R~~Q~~R~~~~~~Na~l~~~~l~k~~---------~L~~~~~~~L~~al---~~-----------~~lS~R~~~rILKva 461 (490)
T COG0606 405 REAQIARAGRIGINAELSEEALRKFC---------ALQREDADLLKAAL---ER-----------LGLSARAYHRILKVA 461 (490)
T ss_pred HHHHHHHhhccCcchhcCHHHHHHhc---------ccCHhHHHHHHHHH---Hh-----------cchhHHHHHHHHHHH
Confidence 110 00000 34556666666642 26667777776532 22 347899999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 722 EALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 722 ~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
..+|.|...+.|...|+.+|+.+-
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHhhh
Confidence 999999999999999999999764
No 22
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.86 E-value=6.5e-22 Score=198.69 Aligned_cols=167 Identities=27% Similarity=0.385 Sum_probs=100.0
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc----CCCcccccce-
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS----GKGSSAVGLT- 520 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~----g~~~~~~glt- 520 (806)
..|.||+.+|+|++++..|+ +|+||+|+||||||++|+.+..++|.-.... ..-.+..|+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 47899999999999999987 3999999999999999999999998721110 1111111100
Q ss_pred --eee----ecCC---------CCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 521 --AYV----TKDP---------ETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 521 --a~~----~k~~---------~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
... .+.+ .+|.....+|.+.+|++||+|+||+..+++....+|++.||++.+.|.++|...++++
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa 148 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPA 148 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB-
T ss_pred CCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEec
Confidence 000 0000 1344577899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCCC--CC------cc--cccccCCccccCcchhhhhh
Q 003637 586 RTSVLACANPSGSRYNP--RL------SV--IENIHLPPTLLSRFDLIYLI 626 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~--~~------~~--~~~i~lp~~LlsRFDli~il 626 (806)
+|.+|||+||+.+.|.. .. .. ...-.|+.++++|||+.+.+
T Consensus 149 ~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~ 199 (206)
T PF01078_consen 149 RFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEV 199 (206)
T ss_dssp -EEEEEEE-S-----------------------------------------
T ss_pred ccEEEEEeccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998655432 11 11 11237889999999998554
No 23
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.86 E-value=2.8e-20 Score=207.89 Aligned_cols=272 Identities=18% Similarity=0.143 Sum_probs=190.9
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-ec--cCC
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-YT--SGK 512 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~t--~g~ 512 (806)
.+.+|.+.+...|+|++++.+.+++++..+. ||||.|+||||||++|+++++.+.+.- |. ...
T Consensus 10 ~i~~l~~~l~~~i~gre~vI~lll~aalag~--------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ 75 (498)
T PRK13531 10 RISRLSSALEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR 75 (498)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHccCC--------------CEEEECCCChhHHHHHHHHHHHhcccCcceeeeee
Confidence 4677889999999999998888776666552 999999999999999999999886531 11 000
Q ss_pred Ccccccceeee-ecC-CCCCccc-cccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 513 GSSAVGLTAYV-TKD-PETGETV-LESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 513 ~~~~~glta~~-~k~-~~~ge~~-le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
-++...+.... .+. ...|.+. ...|.+..++ ++|+|||++++++.|++|+++|+++.+++ .+....++.++.+
T Consensus 76 fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv 151 (498)
T PRK13531 76 FSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLV 151 (498)
T ss_pred ecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEE
Confidence 00111221110 011 1134453 4556665565 99999999999999999999999999985 6778888888877
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCCh-HHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADE-QTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~-~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|+ |+.... -..-+++++|| ++-+..++++. +....|...-... ..........++.+++..+..
T Consensus 152 ~AT-N~LPE~----------g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~~~~--~~~~~~~~~vis~eel~~lq~ 217 (498)
T PRK13531 152 TAS-NELPEA----------DSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQDE--NDNPVPASLQITDEEYQQWQK 217 (498)
T ss_pred EEC-CCCccc----------CCchHHhHhhE-EEEEECCCCCchHHHHHHHHccccc--ccCCCcccCCCCHHHHHHHHH
Confidence 776 754310 01115899999 77778888864 4435554432110 011111245689999988887
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
.+++ ..+++...++|.+....+|.... ...+|+|....++++++|.|.+++++.|+++|+..+...+.+-
T Consensus 218 ~v~~---V~v~d~v~eyI~~L~~~lr~~r~-------~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~vL~HR 287 (498)
T PRK13531 218 EIGK---ITLPDHVFELIFQLRQQLDALPN-------APYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLKDCLWHD 287 (498)
T ss_pred Hhcc---eeCCHHHHHHHHHHHHHHhcCCC-------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhHHHhccC
Confidence 7764 46899999999988777775331 1238999999999999999999999999999999655555443
Q ss_pred H
Q 003637 749 M 749 (806)
Q Consensus 749 l 749 (806)
+
T Consensus 288 l 288 (498)
T PRK13531 288 A 288 (498)
T ss_pred H
Confidence 3
No 24
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.82 E-value=1.3e-19 Score=196.64 Aligned_cols=256 Identities=25% Similarity=0.300 Sum_probs=188.3
Q ss_pred hhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc--------
Q 003637 443 SLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS-------- 514 (806)
Q Consensus 443 si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~-------- 514 (806)
..+..|+|++.+|++|++..+.- .-| .+||.|+.|||||+++|+++.++|...-+.|-++
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-----~ig-------gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-----QIG-------GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-----ccc-------eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 45667899999999999875532 111 7999999999999999999999987543222210
Q ss_pred -----------------------ccccceeeeecC-----------CCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 515 -----------------------SAVGLTAYVTKD-----------PETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 515 -----------------------~~~glta~~~k~-----------~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
-.+++....+.| ...|...+++|.|..|++||++|||++.+++..+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 011111111112 1246778899999999999999999999999999
Q ss_pred HHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHH
Q 003637 561 SMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAK 640 (806)
Q Consensus 561 ~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~ 640 (806)
..||.+|++|...+...|+..+.+++|.+||++||..|. |-+.|++||.+..-.--..+.+....+.+
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE------------LRPQLLDRFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc------------cchhhHhhhcceeeccCCCCHHHHHHHHH
Confidence 999999999877777899999999999999999999887 33899999988755444455666666766
Q ss_pred HHHHhhhcCCCCccCCCCCHHH----------HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCccccc
Q 003637 641 HIVSLHFENPENSEQGVLDLAT----------LTAYVSYARKHIH-PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITA 709 (806)
Q Consensus 641 ~il~~~~~~~~~~~~~~i~~~~----------Lk~yi~~ar~~~~-p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~i 709 (806)
+-+.. ...+..+ |+.-|.-|++... ..+++++..++.+.-..+ .-.|
T Consensus 230 r~~~f----------~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~----~v~g-------- 287 (423)
T COG1239 230 RRLAF----------EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL----AVDG-------- 287 (423)
T ss_pred HHHHh----------hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh----ccCC--------
Confidence 66543 1223333 3433445555332 367888877777664333 2222
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 710 TPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 710 t~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
-|.-..++|.+.++|.++++.+|+.+|+.+|..+.
T Consensus 288 -~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 288 -HRADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred -CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 37777889999999999999999999999998765
No 25
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.82 E-value=3.4e-19 Score=195.20 Aligned_cols=197 Identities=24% Similarity=0.312 Sum_probs=151.7
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GIl 547 (806)
+.+|||.|++||||+.+|++||..++|. +.++..++|.+... ++.++|......|.+..|++|++
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~----~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL 97 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRW----QGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTL 97 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCcc----CCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEE
Confidence 4599999999999999999999999886 67888888876531 11223333345678999999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCcccc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~Ll 617 (806)
||||++.|+...|..|+.+++++.+. +.|.....+.++++|+|+|.. .|.|+ +++++. .+.+||...
T Consensus 98 ~Ldei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~-~i~lPpLRe 174 (329)
T TIGR02974 98 FLDELATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRE 174 (329)
T ss_pred EeCChHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch-hcCCCchhh
Confidence 99999999999999999999998876 667777788899999999975 46664 345554 688888776
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc--CC-CCCCHHHHHHHHHHHHHHH
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IH-PKLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~--~~-p~ls~ea~~~L~~~y~~lR 694 (806)
++-|+. .|++|++..+ +++. .. +.+++++.+.|.+|
T Consensus 175 R~eDI~-------------~L~~~fl~~~-----------------------~~~~~~~~~~~ls~~a~~~L~~y----- 213 (329)
T TIGR02974 175 RQEDIM-------------LLAEHFAIRM-----------------------ARELGLPLFPGFTPQAREQLLEY----- 213 (329)
T ss_pred hhhhHH-------------HHHHHHHHHH-----------------------HHHhCCCCCCCcCHHHHHHHHhC-----
Confidence 666665 7788877642 2221 11 57999999999987
Q ss_pred hcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 003637 695 RRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHD 737 (806)
Q Consensus 695 ~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~D 737 (806)
.|||| +|||+++++.+...+. .+.++.+|
T Consensus 214 ---~WPGN--------vrEL~n~i~~~~~~~~---~~~~~~~~ 242 (329)
T TIGR02974 214 ---HWPGN--------VRELKNVVERSVYRHG---LEEAPIDE 242 (329)
T ss_pred ---CCCch--------HHHHHHHHHHHHHhCC---CCccchhh
Confidence 99999 8999999988766553 34455444
No 26
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.81 E-value=1e-18 Score=192.36 Aligned_cols=278 Identities=23% Similarity=0.293 Sum_probs=197.1
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee----ccC
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY----TSG 511 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~----t~g 511 (806)
....+...+.+.++|.++++..+++.+..+. |+||.|+||||||++++.+++.+....+ +++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~--------------~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~ 79 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAGG--------------HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPD 79 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcCC--------------CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCC
Confidence 3456677788889999998888776555442 9999999999999999999999965322 111
Q ss_pred -CCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeeccee-eeecCceEE
Q 003637 512 -KGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGII-ASLNARTSV 589 (806)
Q Consensus 512 -~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~-~~l~~~~si 589 (806)
.+....|......+....+.+.+..|.+..+.++++++|||++.+++.|++|+++|+++.+++. +.. ..++..+.+
T Consensus 80 l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~--~~~~~~~~~~f~v 157 (329)
T COG0714 80 LLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVP--GLTTIRLPPPFIV 157 (329)
T ss_pred CCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEEC--CcCCcCCCCCCEE
Confidence 1222233333322211145667777888877778999999999999999999999999999875 444 788899999
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHH-HHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRR-LAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~-la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+||+||.+.. ....+|+++++|| ++.+..++|+.+.... +..+................++...+.++..
T Consensus 158 iaT~Np~e~~--------g~~~l~eA~ldRf-~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 228 (329)
T COG0714 158 IATQNPGEYE--------GTYPLPEALLDRF-LLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQK 228 (329)
T ss_pred EEccCccccC--------CCcCCCHHHHhhE-EEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHh
Confidence 9999987644 3678999999999 5667889995554443 3333221010001112334445444444433
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 747 (806)
... ...+++++.+++.......|.... ...+++.|....++..+.+.|.+.++..+..+|+.........
T Consensus 229 ~~~---~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~ 298 (329)
T COG0714 229 EVK---KVPVSDEVIDYIVTLVAALREAPD------VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALA 298 (329)
T ss_pred hhc---cCCchHHHHHHHHHHHHhhccccc------hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhh
Confidence 332 356888999998888877776432 2355788999999999999999999999999998876654433
No 27
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=5.9e-19 Score=193.61 Aligned_cols=191 Identities=24% Similarity=0.343 Sum_probs=158.0
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee-----------ecCCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV-----------TKDPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~-----------~k~~~~ge~~le~Gal~lAd~GIl 547 (806)
+.|||+.|++||||+.+|+.+|..+.|. .+.++++++|.++. .++.++|...-.+|.+..|+||++
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtL 177 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARR---AEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTL 177 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEE
Confidence 4599999999999999999999888884 37899999999874 344567877778999999999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCC-------CCCCCCcccccccCCccccCcc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGS-------RYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g-------~~~~~~~~~~~i~lp~~LlsRF 620 (806)
|+|||..|++..|..|+.+||++++. +.|.....+.++++++|+|-... .+-+++.+. .|+|||...++.
T Consensus 178 fLDEI~~LP~~~Q~kLl~~le~g~~~--rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~-~I~LPpLrER~~ 254 (403)
T COG1221 178 FLDEIHRLPPEGQEKLLRVLEEGEYR--RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL-TITLPPLRERKE 254 (403)
T ss_pred ehhhhhhCCHhHHHHHHHHHHcCceE--ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc-eecCCChhhchh
Confidence 99999999999999999999999987 77778889999999999997521 222334443 789999998888
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhcCC
Q 003637 621 DLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHI--HPKLSDEAAEELTRGYVEMRRRGN 698 (806)
Q Consensus 621 Dli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~--~p~ls~ea~~~L~~~y~~lR~~~~ 698 (806)
|+. .+++|+++.. +++.- .+..++++...|..| .
T Consensus 255 Di~-------------~L~e~Fl~~~-----------------------~~~l~~~~~~~~~~a~~~L~~y--------~ 290 (403)
T COG1221 255 DIL-------------LLAEHFLKSE-----------------------ARRLGLPLSVDSPEALRALLAY--------D 290 (403)
T ss_pred hHH-------------HHHHHHHHHH-----------------------HHHcCCCCCCCCHHHHHHHHhC--------C
Confidence 887 8889998753 33322 234567899999876 9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHH
Q 003637 699 FPGSSKKVITATPRQIESLIRLSEALARI 727 (806)
Q Consensus 699 ~~gn~~~~~~it~R~Leslirla~a~A~l 727 (806)
|||| +|+|+++++.+.+.+..
T Consensus 291 ~pGN--------irELkN~Ve~~~~~~~~ 311 (403)
T COG1221 291 WPGN--------IRELKNLVERAVAQASG 311 (403)
T ss_pred CCCc--------HHHHHHHHHHHHHHhcc
Confidence 9999 89999999999998863
No 28
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.79 E-value=4.8e-18 Score=197.27 Aligned_cols=214 Identities=25% Similarity=0.329 Sum_probs=160.8
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT- 524 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~- 524 (806)
..|+|+....+.+.-.+-.- ...+.+|||+|++||||+.+|++||..++|. +.++..++|.+...
T Consensus 187 ~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~----~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRA----DKPLVYLNCAALPES 252 (509)
T ss_pred CceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC----CCCeEEEEcccCChH
Confidence 35777776555554222211 2234599999999999999999999999886 67888888876532
Q ss_pred ----------cCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecC
Q 003637 525 ----------KDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACAN 594 (806)
Q Consensus 525 ----------k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaN 594 (806)
+..++|...-..|.+..|++|++||||++.|+...|..|+.+++++.+. +.|.....+.++++|+++|
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQ--RVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEe--eCCCCcceecceEEEEecC
Confidence 1112233233457788999999999999999999999999999998875 5566677788899999999
Q ss_pred CC------CCCCC----CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 595 PS------GSRYN----PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 595 p~------~g~~~----~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
.. .+.|+ +++++. .|.|||...++-|+. .|++|++........
T Consensus 331 ~~l~~~~~~~~f~~dL~~rl~~~-~i~lPpLreR~eDI~-------------~L~~~fl~~~~~~~~------------- 383 (509)
T PRK05022 331 RDLREEVRAGRFRADLYHRLSVF-PLSVPPLRERGDDVL-------------LLAGYFLEQNRARLG------------- 383 (509)
T ss_pred CCHHHHHHcCCccHHHHhccccc-EeeCCCchhchhhHH-------------HHHHHHHHHHHHHcC-------------
Confidence 75 45565 455665 789998887777766 788888874322111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
...+.+++++.+.|..| .|||| +|+|+++++.+...+.
T Consensus 384 --------~~~~~~s~~a~~~L~~y--------~WPGN--------vrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 384 --------LRSLRLSPAAQAALLAY--------DWPGN--------VRELEHVISRAALLAR 421 (509)
T ss_pred --------CCCCCCCHHHHHHHHhC--------CCCCc--------HHHHHHHHHHHHHhcC
Confidence 12357999999999977 99999 8999999999888776
No 29
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.79 E-value=5.5e-18 Score=195.15 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=150.9
Q ss_pred ccceEEECCCCChHHHHHHHHHHH--------CCCCeeccCCCcccccceeeeec-----------CCCCCcc-cccccc
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKL--------SPRGIYTSGKGSSAVGLTAYVTK-----------DPETGET-VLESGA 538 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~--------~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~-~le~Ga 538 (806)
+.+|||.|++||||+.+|++||.. ++|. +.++..++|.+.... +.++|.. ...+|.
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~----~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl 317 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKK----SHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGL 317 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccC----CCCeEEeecccCChhhHHHHhcCCccccccCccccccCCc
Confidence 349999999999999999999998 6665 778999999876421 1122221 134688
Q ss_pred ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccc
Q 003637 539 LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIE 608 (806)
Q Consensus 539 l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~ 608 (806)
+..|++|++|||||+.|+...|..|+.+++++.+. +.|.....+.++++|+|+|.. .|+|+ +++++.
T Consensus 318 ~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~--r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~- 394 (538)
T PRK15424 318 FEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVT--RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSIL- 394 (538)
T ss_pred hhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEE--ecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCC-
Confidence 99999999999999999999999999999999887 667777888999999999976 46666 455665
Q ss_pred cccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 003637 609 NIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTR 688 (806)
Q Consensus 609 ~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~ 688 (806)
.+.|||...++-|+. .|++|++..+.. + ....+++++...+.+
T Consensus 395 ~I~lPPLReR~eDI~-------------~L~~~fl~~~~~-----------------------~-~~~~~~~~a~~~~~~ 437 (538)
T PRK15424 395 RLQLPPLRERVADIL-------------PLAESFLKQSLA-----------------------A-LSAPFSAALRQGLQQ 437 (538)
T ss_pred eecCCChhhchhHHH-------------HHHHHHHHHHHH-----------------------H-cCCCCCHHHHHhhHH
Confidence 789998887776666 788888874321 1 122366666544333
Q ss_pred HHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 003637 689 GYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 738 (806)
Q Consensus 689 ~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv 738 (806)
+...|... .|||| +|||+++++.+...+.-.....++.+++
T Consensus 438 a~~~L~~y-~WPGN--------vREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 438 CETLLLHY-DWPGN--------VRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHhC-CCCch--------HHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 33233222 89999 8999999988766543111234555554
No 30
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.78 E-value=4.3e-18 Score=197.77 Aligned_cols=238 Identities=19% Similarity=0.227 Sum_probs=174.3
Q ss_pred hhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCC--eeccCCCcccccceeee--ecC
Q 003637 451 LDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRG--IYTSGKGSSAVGLTAYV--TKD 526 (806)
Q Consensus 451 ~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~--~~t~g~~~~~~glta~~--~k~ 526 (806)
++++|.|++|..+..... | .|||.|++|||||++++.++.++|.. +-....+.+...|.... ...
T Consensus 8 ~~~~~~Al~l~av~p~~~----g-------Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAGL----G-------GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcccc----c-------eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 889999999888754111 1 69999999999999999999999862 11112222222211110 000
Q ss_pred CCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcc
Q 003637 527 PETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSV 606 (806)
Q Consensus 527 ~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~ 606 (806)
-..|...+++|.+.+|++||+||||++.+++..+++|+++||++.|+|.+.|...+++++|.+||+.|+.. |
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~--~------ 148 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE--E------ 148 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh--c------
Confidence 11345568999999999999999999999999999999999999999999999999999999999877652 1
Q ss_pred cccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc-CCCCCCHHHHHH
Q 003637 607 IENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH-IHPKLSDEAAEE 685 (806)
Q Consensus 607 ~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~-~~p~ls~ea~~~ 685 (806)
...||+++++|||+.+.+ +++...... ....+.+.+. .|++. -+..++++.+++
T Consensus 149 --~~~L~~~lLDRf~l~v~v-~~~~~~~~~------------------~~~~~~~~I~----~AR~rl~~v~v~~~~l~~ 203 (584)
T PRK13406 149 --DERAPAALADRLAFHLDL-DGLALRDAR------------------EIPIDADDIA----AARARLPAVGPPPEAIAA 203 (584)
T ss_pred --ccCCCHHhHhheEEEEEc-CCCChHHhc------------------ccCCCHHHHH----HHHHHHccCCCCHHHHHH
Confidence 356889999999887544 444332211 0112222222 22322 235689999888
Q ss_pred HHHHHHHHHhcCCCCCCCCccccc-CHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 003637 686 LTRGYVEMRRRGNFPGSSKKVITA-TPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 686 L~~~y~~lR~~~~~~gn~~~~~~i-t~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 746 (806)
+.+.+..+ ++ |.|....++|.|.++|.|++++.|+.+||.+|+.++-
T Consensus 204 i~~~~~~~--------------gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 204 LCAAAAAL--------------GIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HHHHHHHh--------------CCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 88766432 24 6799999999999999999999999999999987764
No 31
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.78 E-value=9.6e-19 Score=183.42 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=162.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCc------cccccccccccCCceeeccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGE------TVLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge------~~le~Gal~lAd~GIl~IDEid 553 (806)
.++||.|++||||..+|+++|..+||+ .+++.+.+|........++.- ..-..|.+.+|++|++|+|||.
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~----~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIg 303 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRH----SKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIG 303 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCccc----CCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhh
Confidence 399999999999999999999999998 889999999987655443211 1234588999999999999999
Q ss_pred cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCccccCcchhh
Q 003637 554 KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 554 km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~LlsRFDli 623 (806)
.|++..|..|+.++.+|++. +.|.......+++||+|+--. .|+|+ +++++. ++++||...+--|+.
T Consensus 304 EmSp~lQaKLLRFL~DGtFR--RVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVL-tl~~PpLRer~~di~ 380 (511)
T COG3283 304 EMSPRLQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVL-TLNLPPLRERPQDIM 380 (511)
T ss_pred hcCHHHHHHHHHHhcCCcee--ecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhee-eecCCccccCcccch
Confidence 99999999999999999987 889999999999999999754 56666 677887 889987764444444
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~ 703 (806)
.|+++++.+++.... ...|+++++...+|.+| .||||
T Consensus 381 -------------pL~e~Fv~q~s~elg---------------------~p~pkl~~~~~~~L~~y--------~WpGN- 417 (511)
T COG3283 381 -------------PLAELFVQQFSDELG---------------------VPRPKLAADLLTVLTRY--------AWPGN- 417 (511)
T ss_pred -------------HHHHHHHHHHHHHhC---------------------CCCCccCHHHHHHHHHc--------CCCcc-
Confidence 889999987664432 45689999999999977 99999
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 003637 704 KKVITATPRQIESLIRLSEALARIRLSELVEKHDVE 739 (806)
Q Consensus 704 ~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~ 739 (806)
+|||.+.+-.|.+... ...++.+|+.
T Consensus 418 -------VRqL~N~iyRA~s~~E---g~~l~i~~i~ 443 (511)
T COG3283 418 -------VRQLKNAIYRALTLLE---GYELRIEDIL 443 (511)
T ss_pred -------HHHHHHHHHHHHHHhc---cCccchhhcc
Confidence 9999999988766544 5556655554
No 32
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.78 E-value=7.1e-18 Score=184.94 Aligned_cols=189 Identities=22% Similarity=0.335 Sum_probs=145.3
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-----------CCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK-----------DPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~~le~Gal~lAd~GIl 547 (806)
+.+|||+|++||||+.+|++||..++|. +.++..++|...... ..++|......|.+..|++|++
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~----~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL 104 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRW----QGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTL 104 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCcc----CCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeE
Confidence 3499999999999999999999999886 678888888865311 1112222233677889999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCcccc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~Ll 617 (806)
||||++.|+...|..|+++++++.+. +.|.....+.++++|+++|.. .+.|. +++++. .+.+||...
T Consensus 105 ~l~~i~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~-~i~lPpLRe 181 (326)
T PRK11608 105 FLDELATAPMLVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFD-VVQLPPLRE 181 (326)
T ss_pred EeCChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCC-EEECCChhh
Confidence 99999999999999999999998765 556667778889999999975 45664 344443 688888776
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHH
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH---IHPKLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~---~~p~ls~ea~~~L~~~y~~lR 694 (806)
++-|+. .|++|++... +++. +.+.+++++.+.|..|
T Consensus 182 R~eDI~-------------~L~~~fl~~~-----------------------~~~~~~~~~~~~s~~al~~L~~y----- 220 (326)
T PRK11608 182 RQSDIM-------------LMAEHFAIQM-----------------------CRELGLPLFPGFTERARETLLNY----- 220 (326)
T ss_pred hhhhHH-------------HHHHHHHHHH-----------------------HHHhCCCCCCCCCHHHHHHHHhC-----
Confidence 667766 7778877642 2221 1257999999999977
Q ss_pred hcCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 695 RRGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 695 ~~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
.|||| +|||+++++.+...+.
T Consensus 221 ---~WPGN--------vrEL~~vl~~a~~~~~ 241 (326)
T PRK11608 221 ---RWPGN--------IRELKNVVERSVYRHG 241 (326)
T ss_pred ---CCCcH--------HHHHHHHHHHHHHhcC
Confidence 99999 8999999998776543
No 33
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.77 E-value=8e-18 Score=194.07 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=156.5
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-----------CCCCCcc-ccccccccccCCce
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK-----------DPETGET-VLESGALVLSDRGI 546 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~-~le~Gal~lAd~GI 546 (806)
+.+|||.|++||||+.+|++||..++|. +.++..++|.+.... +.++|.. ....|.+..|++|+
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~----~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGT 310 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRR----DFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGT 310 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcC----CCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCce
Confidence 4599999999999999999999999886 788999999876421 1122221 13568888999999
Q ss_pred eeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCccc
Q 003637 547 CCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTL 616 (806)
Q Consensus 547 l~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~L 616 (806)
+||||++.|+...|..|+.+++++.+. +.|.....+.++++|+|+|.. .|.|+ +++++. .+.+||..
T Consensus 311 LfLdeI~~Lp~~~Q~~Ll~~L~~~~~~--r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~-~I~lPPLR 387 (526)
T TIGR02329 311 LFLDEIGEMPLPLQTRLLRVLEEREVV--RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSIL-RIALPPLR 387 (526)
T ss_pred EEecChHhCCHHHHHHHHHHHhcCcEE--ecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCc-EEeCCCch
Confidence 999999999999999999999998876 667667778889999999975 45665 456665 78999888
Q ss_pred cCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Q 003637 617 LSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 617 lsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
.++-|+. .|+.|++..+. +. ....+++++.+.+...+..|...
T Consensus 388 eR~eDI~-------------~L~~~fl~~~~-----------------------~~-~~~~~~~~a~~~~~~~~~~L~~y 430 (526)
T TIGR02329 388 ERPGDIL-------------PLAAEYLVQAA-----------------------AA-LRLPDSEAAAQVLAGVADPLQRY 430 (526)
T ss_pred hchhHHH-------------HHHHHHHHHHH-----------------------HH-cCCCCCHHHHHHhHHHHHHHHhC
Confidence 7777776 78888887432 11 12348888888733322222222
Q ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 697 GNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 697 ~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
.|||| +|||+++++.+...+.......|+.+|+...
T Consensus 431 -~WPGN--------vrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 431 -PWPGN--------VRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred -CCCch--------HHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 89999 8999999988776653222457888886543
No 34
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=9.5e-18 Score=194.88 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=167.5
Q ss_pred HHHHHHHHHhcChhHHHHHHHhhcc----cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHH
Q 003637 422 SKIQQLKELSRQPNIYETLTRSLAP----NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQ 497 (806)
Q Consensus 422 ~~~~~i~~l~~~~~~~~~l~~si~P----~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~ 497 (806)
+++++++++.. -.+-+-+.....| +++|++...+.+...+++.. ..||||+||||||||++|+
T Consensus 38 ~~~~~~~~~~~-~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~------------~~~vLi~Ge~GtGKt~lAr 104 (531)
T TIGR02902 38 KELEKLNKMRA-IRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPN------------PQHVIIYGPPGVGKTAAAR 104 (531)
T ss_pred HHHHHHHHhhh-hhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHH
Confidence 34455555432 1122234444445 68999999888886666542 2399999999999999999
Q ss_pred HHHHHCCCC---eeccCCCcccccceeeee-------------cCC---------CCCccccccccccccCCceeecccc
Q 003637 498 YIHKLSPRG---IYTSGKGSSAVGLTAYVT-------------KDP---------ETGETVLESGALVLSDRGICCIDEF 552 (806)
Q Consensus 498 ~ia~~~pr~---~~t~g~~~~~~glta~~~-------------k~~---------~~ge~~le~Gal~lAd~GIl~IDEi 552 (806)
++++.+.+. .+..+.++..+.++.... .++ ..|.....+|.+..|++|++||||+
T Consensus 105 ~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI 184 (531)
T TIGR02902 105 LVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEI 184 (531)
T ss_pred HHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEech
Confidence 999875432 222234555555542100 011 0112234567888999999999999
Q ss_pred ccCCHHHHHHHHHHHhhcEEEEeecc---------------eeeeecCceEEEEecCCCCCCCCCCCcccccccCCcccc
Q 003637 553 DKMSESARSMLHEVMEQQTVSIAKAG---------------IIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLL 617 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~q~isi~kag---------------~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Ll 617 (806)
++|++..|+.|+.+||++.+.+..+. ....+++++++|+|+|... ..++++++
T Consensus 185 ~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p------------~~L~paLr 252 (531)
T TIGR02902 185 GELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP------------EEIPPALR 252 (531)
T ss_pred hhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc------------ccCChHHh
Confidence 99999999999999999887654210 0234678899999887433 24779999
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRG 697 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~ 697 (806)
+||..++ + ..++.+++.+++...-+.....+++++.+.|..+
T Consensus 253 sR~~~I~-f-----------------------------~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y-------- 294 (531)
T TIGR02902 253 SRCVEIF-F-----------------------------RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKY-------- 294 (531)
T ss_pred hhhheee-C-----------------------------CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh--------
Confidence 9985442 1 2223333444443333334467999999988764
Q ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 698 NFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 698 ~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
.| | .|++.++++.|...|..+.+..|+.+|+.+++.
T Consensus 295 ~~--n--------~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 295 AS--N--------GREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred hh--h--------HHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 33 2 699999999999888877778999999999984
No 35
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.76 E-value=1.6e-17 Score=194.55 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=153.7
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCce
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGI 546 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GI 546 (806)
.+.+|||.|++||||+.+|++||..++|. +.++..++|..... +..++|......|.+..|++|+
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~----~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~Gt 293 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRA----KRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGT 293 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCC----CCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCe
Confidence 34599999999999999999999999876 67888888876521 1112222233457788999999
Q ss_pred eeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCccc
Q 003637 547 CCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTL 616 (806)
Q Consensus 547 l~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~L 616 (806)
+||||++.|+...|..|+++++++.+. +.|.....+.++++|+++|.. .+.|+ +++++. .+.+||..
T Consensus 294 L~ldei~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr 370 (534)
T TIGR01817 294 LFLDEIGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV-PIFLPPLR 370 (534)
T ss_pred EEEechhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC-eeeCCCcc
Confidence 999999999999999999999998876 445556677789999999875 45554 344544 67888777
Q ss_pred cCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Q 003637 617 LSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 617 lsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
.++-|+. .|++|++....... ...+.+++++.+.|.+|
T Consensus 371 eR~eDi~-------------~L~~~~l~~~~~~~----------------------~~~~~~s~~a~~~L~~~------- 408 (534)
T TIGR01817 371 ERREDIP-------------LLAEAFLEKFNREN----------------------GRPLTITPSAIRVLMSC------- 408 (534)
T ss_pred cccccHH-------------HHHHHHHHHHHHHc----------------------CCCCCCCHHHHHHHHhC-------
Confidence 6666666 77888876432111 12257999999999977
Q ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH
Q 003637 697 GNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEE 740 (806)
Q Consensus 697 ~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ 740 (806)
.|||| +|+|+++++.+...+. ...|+.+|+..
T Consensus 409 -~WPGN--------vrEL~~v~~~a~~~~~---~~~I~~~~l~~ 440 (534)
T TIGR01817 409 -KWPGN--------VRELENCLERTATLSR---SGTITRSDFSC 440 (534)
T ss_pred -CCCCh--------HHHHHHHHHHHHHhCC---CCcccHHHCch
Confidence 99999 8999999998776554 67888888753
No 36
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.76 E-value=8.9e-18 Score=200.71 Aligned_cols=226 Identities=19% Similarity=0.240 Sum_probs=165.9
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
++.++|....-+.++-.+-.. ++.+.+|||.|++||||+.+|++||+.++|. +.++..++|.+...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~----~~pfv~vnc~~~~~ 389 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERA----AGPYIAVNCQLYPD 389 (638)
T ss_pred ccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc----CCCeEEEECCCCCh
Confidence 456777665444333221111 1233499999999999999999999999876 67888888887642
Q ss_pred cC---CCCC-----ccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 525 KD---PETG-----ETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 525 k~---~~~g-----e~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
.. ..-| ......|.+..|++|++||||++.|+...|..|+.+++++.+. +.|.....+.++++|+|+|..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVIT--RLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceEEeeEEEEEeccCC
Confidence 11 0011 1122357788999999999999999999999999999998876 556666777889999999975
Q ss_pred ------CCCCC----CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 597 ------GSRYN----PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 597 ------~g~~~----~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
.+.|+ ++++.. .+.|||...++-|+. .|++|++....
T Consensus 468 l~~~~~~~~f~~dL~~~l~~~-~i~lPpLreR~~Di~-------------~L~~~~l~~~~------------------- 514 (638)
T PRK11388 468 LAMLVEQNRFSRQLYYALHAF-EITIPPLRMRREDIP-------------ALVNNKLRSLE------------------- 514 (638)
T ss_pred HHHHHhcCCChHHHhhhhcee-EEeCCChhhhhhHHH-------------HHHHHHHHHHH-------------------
Confidence 45665 455565 789988776667776 77888876421
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 667 VSYARKH-IHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 667 i~~ar~~-~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
++. ..+.+++++.+.|.+| .|||| +|||+++++.+...+. ...|+.+|+...+
T Consensus 515 ----~~~~~~~~~s~~a~~~L~~y--------~WPGN--------vreL~~~l~~~~~~~~---~~~i~~~~lp~~~ 568 (638)
T PRK11388 515 ----KRFSTRLKIDDDALARLVSY--------RWPGN--------DFELRSVIENLALSSD---NGRIRLSDLPEHL 568 (638)
T ss_pred ----HHhCCCCCcCHHHHHHHHcC--------CCCCh--------HHHHHHHHHHHHHhCC---CCeecHHHCchhh
Confidence 111 1246999999999987 99999 8999999998776543 5678888887655
No 37
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.75 E-value=4.3e-17 Score=191.50 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=129.7
Q ss_pred cccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecce--------eeeecCceEEEEecCCCCCCCCCCCc
Q 003637 534 LESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGI--------IASLNARTSVLACANPSGSRYNPRLS 605 (806)
Q Consensus 534 le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~--------~~~l~~~~siIAAaNp~~g~~~~~~~ 605 (806)
+++|++..|++|++||||++.|++..|..|+++|+++++.+..... ....++++.+|+++|+..
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~-------- 279 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD-------- 279 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence 4789999999999999999999999999999999999998754311 234678999999999742
Q ss_pred ccccccCCccccCcch---hhhhhccC--CChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc-CCCCCC
Q 003637 606 VIENIHLPPTLLSRFD---LIYLILDK--ADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH-IHPKLS 679 (806)
Q Consensus 606 ~~~~i~lp~~LlsRFD---li~il~d~--~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~-~~p~ls 679 (806)
...+.++|++||+ +.+.+.+. .+.+....+++++.+. ++++ ..|.++
T Consensus 280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~------------------------~~r~G~l~~~s 332 (608)
T TIGR00764 280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE------------------------VKKDGRIPHFT 332 (608)
T ss_pred ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH------------------------HHHhCCCCcCC
Confidence 2356799999999 54433332 2344444455544432 2222 346899
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 680 DEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 680 ~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
++|.+.|.++|..+- + ....++++.|+|.+++|.|...|+.+.+..|+.+||.+|++..+..
T Consensus 333 ~~Av~~Li~~~~R~a--g-----~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 333 RDAVEEIVREAQRRA--G-----RKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHHHHHHHHHHH--h-----cccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 999999998875431 1 1233667899999999999999999999999999999998766553
No 38
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.74 E-value=3.1e-17 Score=190.56 Aligned_cols=197 Identities=23% Similarity=0.329 Sum_probs=150.7
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-----------CCCCCccccccccccccCCceee
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK-----------DPETGETVLESGALVLSDRGICC 548 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~~le~Gal~lAd~GIl~ 548 (806)
.+|||.|++||||+.+|+++|..+.|. ..++..++|.+.... ..+++......|.+..|++|++|
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~r~----~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~ 303 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSPRG----KKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVL 303 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCC----CCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEE
Confidence 499999999999999999999999876 677888888765321 01112222345778889999999
Q ss_pred ccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCccccC
Q 003637 549 IDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLLS 618 (806)
Q Consensus 549 IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~Lls 618 (806)
|||++.|+...|..|+.+++++++. +.|.....+.+++||+|++.. .|.|+ +++++. .+.|||...+
T Consensus 304 LdeI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~-~i~lPpLreR 380 (520)
T PRK10820 304 LDEIGEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL-TLNLPPLRDR 380 (520)
T ss_pred EeChhhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCee-EEeCCCcccC
Confidence 9999999999999999999998765 556666667789999999864 45555 455554 7889887766
Q ss_pred cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHhc
Q 003637 619 RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 619 RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~--~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
+-|+. .|++|++... +++. ..|.+++++.+.|..|
T Consensus 381 ~~Di~-------------~L~~~fl~~~-----------------------~~~~g~~~~~ls~~a~~~L~~y------- 417 (520)
T PRK10820 381 PQDIM-------------PLTELFVARF-----------------------ADEQGVPRPKLAADLNTVLTRY------- 417 (520)
T ss_pred hhHHH-------------HHHHHHHHHH-----------------------HHHcCCCCCCcCHHHHHHHhcC-------
Confidence 66765 7788887643 2222 2358999999999877
Q ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 003637 697 GNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 738 (806)
Q Consensus 697 ~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv 738 (806)
.|||| +|||+++++.+...+. ...|+.+|+
T Consensus 418 -~WPGN--------vreL~nvl~~a~~~~~---~~~i~~~~~ 447 (520)
T PRK10820 418 -GWPGN--------VRQLKNAIYRALTQLE---GYELRPQDI 447 (520)
T ss_pred -CCCCH--------HHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 99999 8999999988776554 567777775
No 39
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.73 E-value=8.1e-17 Score=184.68 Aligned_cols=199 Identities=23% Similarity=0.374 Sum_probs=152.9
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GIl 547 (806)
+.+++|.|++||||+.+|+++|..+++. +.++..++|.+... +..++|......|.+..|++|++
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~----~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRK----DKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTL 237 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcC----CCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEE
Confidence 4599999999999999999999999875 56677777776521 11223333445688899999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCCC----CCcccccccCCcccc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYNP----RLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~~----~~~~~~~i~lp~~Ll 617 (806)
||||++.|+...|..|+++++++.+. +.|.....+.++++|+|+|.. .|.|+. +++.. .+.+||...
T Consensus 238 ~l~~i~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~lPpLr~ 314 (445)
T TIGR02915 238 FLDEIGDLPLNLQAKLLRFLQERVIE--RLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEI-SITIPPLRS 314 (445)
T ss_pred EEechhhCCHHHHHHHHHHHhhCeEE--eCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccc-eecCCCchh
Confidence 99999999999999999999998875 556666778899999999986 366663 34444 688888776
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHh
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IHPKLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~--~~p~ls~ea~~~L~~~y~~lR~ 695 (806)
++-|+. .|++|++..+ ++++ ..+.+++++.+.|..|
T Consensus 315 R~~Di~-------------~l~~~~l~~~-----------------------~~~~~~~~~~~~~~a~~~L~~~------ 352 (445)
T TIGR02915 315 RDGDAV-------------LLANAFLERF-----------------------ARELKRKTKGFTDDALRALEAH------ 352 (445)
T ss_pred chhhHH-------------HHHHHHHHHH-----------------------HHHhCCCCCCCCHHHHHHHHhC------
Confidence 666665 7788887643 2221 1247999999999977
Q ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 003637 696 RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVE 739 (806)
Q Consensus 696 ~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~ 739 (806)
.|||| +|+|+++++.+...+. ...|+.+|+.
T Consensus 353 --~wpgN--------vreL~~~i~~a~~~~~---~~~i~~~~l~ 383 (445)
T TIGR02915 353 --AWPGN--------VRELENKVKRAVIMAE---GNQITAEDLG 383 (445)
T ss_pred --CCCCh--------HHHHHHHHHHHHHhCC---CCcccHHHcC
Confidence 99999 8999999998877655 5667777653
No 40
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.73 E-value=4.1e-17 Score=173.74 Aligned_cols=209 Identities=19% Similarity=0.260 Sum_probs=141.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeec-cCCC-cc---cccce-eee------------ecCCCCCccccccccccc-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKG-SS---AVGLT-AYV------------TKDPETGETVLESGALVL- 541 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~-~~---~~glt-a~~------------~k~~~~ge~~le~Gal~l- 541 (806)
|+||.|+||||||++|+++++...+.++. .+.. .. .+|-- ... .+........+..|.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 99999999999999999999977554321 1111 00 01100 000 000000111223566664
Q ss_pred -cCCceeeccccccCCHHHHHHHHHHHhhcEEEEeec---ceeeeecCceEEEEecCCCCCCCCCCCcccccccCCcccc
Q 003637 542 -SDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKA---GIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLL 617 (806)
Q Consensus 542 -Ad~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~ka---g~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Ll 617 (806)
+.+++|+||||++++++.++.|+++|+++.+++... +.....+.++++|+|+||.... ....++++|+
T Consensus 103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~--------g~~~l~~aL~ 174 (262)
T TIGR02640 103 VREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA--------GVHETQDALL 174 (262)
T ss_pred HHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc--------ceecccHHHH
Confidence 478999999999999999999999999999887532 2344567789999999986422 1334679999
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRG 697 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~ 697 (806)
+|| ..+..++|+.+.+.+|...- ..++++..+.+.+.+..+|..+
T Consensus 175 ~R~--~~i~i~~P~~~~e~~Il~~~---------------------------------~~~~~~~~~~iv~~~~~~R~~~ 219 (262)
T TIGR02640 175 DRL--ITIFMDYPDIDTETAILRAK---------------------------------TDVAEDSAATIVRLVREFRASG 219 (262)
T ss_pred hhc--EEEECCCCCHHHHHHHHHHh---------------------------------hCCCHHHHHHHHHHHHHHHhhC
Confidence 998 45667888887777665432 1257788899999999999422
Q ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 698 NFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 698 ~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
. ....++|++..+.|.+.++ .++..++.+|+.+..
T Consensus 220 ~-------~~~~~~r~~i~~~~~~~~~---~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 220 D-------EITSGLRASLMIAEVATQQ---DIPVDVDDEDFVDLC 254 (262)
T ss_pred C-------ccCCcHHHHHHHHHHHHHc---CCCCCCCcHHHHHHH
Confidence 1 1345678876666665554 669999999998765
No 41
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.73 E-value=3.5e-17 Score=185.18 Aligned_cols=231 Identities=26% Similarity=0.324 Sum_probs=170.5
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCcccc-ccccccccC
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVL-ESGALVLSD 543 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~l-e~Gal~lAd 543 (806)
.+.++++|+.|+|||||..+++++|+.+. . ..++.+++|.++.. ...++|.+.. ..|.+..|+
T Consensus 333 ~~~~~pvll~GEtGtGKe~laraiH~~s~-~----~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~ 407 (606)
T COG3284 333 AATDLPVLLQGETGTGKEVLARAIHQNSE-A----AGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD 407 (606)
T ss_pred hhcCCCeEecCCcchhHHHHHHHHHhccc-c----cCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC
Confidence 45677999999999999999999999997 4 57889999988752 2223444332 358899999
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCC
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLP 613 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp 613 (806)
+|++|+|||..|+...|+.|+.++++++|. ..|... .+.+++||+|++.. .|+|+ |+++.. .+.||
T Consensus 408 gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~--p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~-~i~lP 483 (606)
T COG3284 408 GGTLFLDEIGDMPLALQSRLLRVLQEGVVT--PLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAF-VITLP 483 (606)
T ss_pred CCccHHHHhhhchHHHHHHHHHHHhhCcee--ccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCe-eeccC
Confidence 999999999999999999999999999987 777777 89999999999986 67777 567776 78898
Q ss_pred ccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 003637 614 PTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEM 693 (806)
Q Consensus 614 ~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~l 693 (806)
|.. .|=|-+ .+..+++..+.. -.-.+++++...|..+
T Consensus 484 ~lr-~R~d~~-------------~~l~~~~~~~~~-------------------------~~~~l~~~~~~~l~~~---- 520 (606)
T COG3284 484 PLR-ERSDRI-------------PLLDRILKREND-------------------------WRLQLDDDALARLLAY---- 520 (606)
T ss_pred chh-cccccH-------------HHHHHHHHHccC-------------------------CCccCCHHHHHHHHhC----
Confidence 766 555555 444555543322 1126999999999976
Q ss_pred HhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH---------HHHHHHhhhccCCCCCchhh
Q 003637 694 RRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL---------LEVAMQQSATDHSTGTIDMD 764 (806)
Q Consensus 694 R~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l---------~~~sl~~~~~~~~~g~~d~~ 764 (806)
.|||| +|+|.++|+.+.+++. ...|...|+...+.- -+.+|.. ++....|.+...
T Consensus 521 ----~WPGN--------irel~~v~~~~~~l~~---~g~~~~~dlp~~l~~~~~~~~~~~~~~~l~~-al~~~~~~is~a 584 (606)
T COG3284 521 ----RWPGN--------IRELDNVIERLAALSD---GGRIRVSDLPPELLEEQATPREDIEKAALLA-ALQATNGNISEA 584 (606)
T ss_pred ----CCCCc--------HHHHHHHHHHHHHcCC---CCeeEcccCCHHHHhhhcccccchHHHHHHH-HHHHcCCCHHHH
Confidence 99999 8999999999777664 555666665554321 1222222 333345666555
Q ss_pred HhhhCCchhH
Q 003637 765 LITTGVSASE 774 (806)
Q Consensus 765 ~~~~g~s~~~ 774 (806)
.-..|.+.+.
T Consensus 585 a~~lgi~R~T 594 (606)
T COG3284 585 ARLLGISRST 594 (606)
T ss_pred HHHhCCCHHH
Confidence 5556665554
No 42
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.73 E-value=1.2e-16 Score=184.52 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=155.8
Q ss_pred ccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-----------CCCCCccccccccccccCCc
Q 003637 477 RGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK-----------DPETGETVLESGALVLSDRG 545 (806)
Q Consensus 477 rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~~le~Gal~lAd~G 545 (806)
+.+.+|||.|++||||+.+|+++|..+++. +.++..++|...... ..++|......|.+..+++|
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~----~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRA----KAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCC----CCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 345699999999999999999999999876 667777777665211 11233334456888999999
Q ss_pred eeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCcc
Q 003637 546 ICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPT 615 (806)
Q Consensus 546 Il~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~ 615 (806)
++||||++.|+...|..|+.+++++.+. +.|.......++++|+|+|.. .|.|. ++++.. .+.+||.
T Consensus 235 tl~l~~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~~PpL 311 (469)
T PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI-RVHLPPL 311 (469)
T ss_pred EEEEeccccCCHHHHHHHHHHHhcCcEE--eCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcce-eecCCCc
Confidence 9999999999999999999999998876 445555566789999999975 45554 344444 6888887
Q ss_pred ccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 003637 616 LLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 616 LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~ 695 (806)
..++-|+. .|++|++..+..... ...+.+++++.+.|..|
T Consensus 312 reR~~Di~-------------~l~~~~l~~~~~~~~---------------------~~~~~~~~~a~~~L~~~------ 351 (469)
T PRK10923 312 RERREDIP-------------RLARHFLQVAARELG---------------------VEAKLLHPETEAALTRL------ 351 (469)
T ss_pred ccchhhHH-------------HHHHHHHHHHHHHcC---------------------CCCCCcCHHHHHHHHhC------
Confidence 76666666 788888764322110 11236999999999977
Q ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 696 RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 696 ~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.|||| +|+|+++++.+...+. ...|+.+|+...+
T Consensus 352 --~wpgN--------v~eL~~~i~~~~~~~~---~~~i~~~~l~~~~ 385 (469)
T PRK10923 352 --AWPGN--------VRQLENTCRWLTVMAA---GQEVLIQDLPGEL 385 (469)
T ss_pred --CCCCh--------HHHHHHHHHHHHHhCC---CCcccHHHCcHhh
Confidence 99999 8999999999877665 6788888876443
No 43
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.72 E-value=1.6e-16 Score=191.08 Aligned_cols=211 Identities=24% Similarity=0.329 Sum_probs=155.9
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK- 525 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k- 525 (806)
.++|.....+.++-.+..- ...+.||||+|++||||+.+|++||..+.+. +.++..++|.+....
T Consensus 377 ~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~----~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRN----NRRMVKMNCAAMPAGL 442 (686)
T ss_pred ceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC----CCCeEEEecccCChhH
Confidence 5778776665554222211 1234599999999999999999999999876 677777777765211
Q ss_pred ----------CCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 526 ----------DPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 526 ----------~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
..++|......|.+..|++|++|||||+.|+.+.|..|+.+|+++.+. +.|.....+.++++|+++|.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE--RLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEE--eCCCCCcccceEEEEEeCCC
Confidence 111222233457788999999999999999999999999999998775 55666666788999999997
Q ss_pred C------CCCCC----CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 596 S------GSRYN----PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 596 ~------~g~~~----~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
. .+.|+ +++++. .|.+||...++-|+. .|++|++..+
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~~~-~i~lPpLreR~~Di~-------------~L~~~~l~~~------------------- 567 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLNVF-PIHLPPLRERPEDIP-------------LLVKAFTFKI------------------- 567 (686)
T ss_pred CHHHHHHcCcccHHHHhccCee-EEeCCChhhhHhHHH-------------HHHHHHHHHH-------------------
Confidence 5 45555 355565 789988886666665 7788887642
Q ss_pred HHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 666 YVSYARKHI--HPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 666 yi~~ar~~~--~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
+++.- .+.+++++.+.|..| .|||| +|+|+++++.+...+.
T Consensus 568 ----~~~~~~~~~~~s~~al~~L~~y--------~WPGN--------vrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 568 ----ARRMGRNIDSIPAETLRTLSNM--------EWPGN--------VRELENVIERAVLLTR 610 (686)
T ss_pred ----HHHcCCCCCCcCHHHHHHHHhC--------CCCCc--------HHHHHHHHHHHHHhCC
Confidence 22211 236999999999977 99999 8999999999877554
No 44
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.72 E-value=2.8e-16 Score=168.92 Aligned_cols=205 Identities=17% Similarity=0.186 Sum_probs=140.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeecc--CC---CcccccceeeeecCCCCCcccccccccccc--CCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTS--GK---GSSAVGLTAYVTKDPETGETVLESGALVLS--DRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~--g~---~~~~~glta~~~k~~~~ge~~le~Gal~lA--d~GIl~IDEid 553 (806)
||||.|+||||||++++.+++.+....+.- .. ....+|-...+.++. .+...+..|.+..| .+++|++||||
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g-~~~~~f~~GpL~~A~~~g~illlDEin 144 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDG-KQITEFRDGILPWALQHNVALCFDEYD 144 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCC-cceeEEecCcchhHHhCCeEEEechhh
Confidence 999999999999999999999997654321 11 111233333322221 12244566777654 56789999999
Q ss_pred cCCHHHHHHHHHHHh-hcEEEEeecceeeeecCceEEEEecCCCC-----CCCCCCCcccccccCCccccCcchhhhhhc
Q 003637 554 KMSESARSMLHEVME-QQTVSIAKAGIIASLNARTSVLACANPSG-----SRYNPRLSVIENIHLPPTLLSRFDLIYLIL 627 (806)
Q Consensus 554 km~~~~~~~L~e~Me-~q~isi~kag~~~~l~~~~siIAAaNp~~-----g~~~~~~~~~~~i~lp~~LlsRFDli~il~ 627 (806)
.++++.+..|+.+|| .+.+++...+....-+..|+++||+||.+ |.|. ....+|.++++|| ++.+..
T Consensus 145 ~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~------Gt~~l~~A~lDRF-~i~~~~ 217 (327)
T TIGR01650 145 AGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYH------GTQQINQAQMDRW-SIVTTL 217 (327)
T ss_pred ccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCccee------eeecCCHHHHhhe-eeEeeC
Confidence 999999999999999 46888876555555566799999999975 2232 3678899999999 554668
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 003637 628 DKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVI 707 (806)
Q Consensus 628 d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~ 707 (806)
+|++.+.+..|....... . ....+++..+++++.....|+.-. +.....
T Consensus 218 ~Yp~~e~E~~Il~~~~~~----~------------------------~~~~~~~i~~~mV~la~~tR~~~~---~~~i~~ 266 (327)
T TIGR01650 218 NYLEHDNEAAIVLAKAKG----F------------------------DDTEGKDIINAMVRVADMTRNAFI---NGDIST 266 (327)
T ss_pred CCCCHHHHHHHHHhhccC----C------------------------CccchHHHHHHHHHHHHHHHhhhc---cCCccc
Confidence 999998888876543210 0 001134566777777777776210 123457
Q ss_pred ccCHHHHHHHHHHHHHH
Q 003637 708 TATPRQIESLIRLSEAL 724 (806)
Q Consensus 708 ~it~R~Leslirla~a~ 724 (806)
++|+|.+..+++++...
T Consensus 267 ~~SpR~li~w~~~~~~f 283 (327)
T TIGR01650 267 VMSPRTVITWAENAEIF 283 (327)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 89999998888876643
No 45
>PRK15115 response regulator GlrR; Provisional
Probab=99.71 E-value=2.5e-16 Score=180.62 Aligned_cols=202 Identities=25% Similarity=0.399 Sum_probs=152.3
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCce
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGI 546 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GI 546 (806)
.+.+|+|.|++||||+.+|+++|+.+++. +.++..++|.+... +..++|......|.+..+++|+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~----~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRA----SKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCC----CCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 34599999999999999999999999875 56777777765421 1223344445668889999999
Q ss_pred eeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCccc
Q 003637 547 CCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTL 616 (806)
Q Consensus 547 l~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~L 616 (806)
+||||++.|+...|..|+.+|+++.+. ..|.......++++|+|++.. .|+|+ +.++.. .+.+||..
T Consensus 232 l~l~~i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~-~i~lPpLr 308 (444)
T PRK15115 232 LFLDEIGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV-SLKIPALA 308 (444)
T ss_pred EEEEccccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee-eecCCChH
Confidence 999999999999999999999998874 556666667789999999965 45554 344444 67888866
Q ss_pred cCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHH
Q 003637 617 LSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IHPKLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 617 lsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~--~~p~ls~ea~~~L~~~y~~lR 694 (806)
.++-|+. .|++|++..+ ++++ ..+.++++|.+.|..|
T Consensus 309 ~R~eDi~-------------~l~~~~l~~~-----------------------~~~~~~~~~~~~~~a~~~L~~~----- 347 (444)
T PRK15115 309 ERTEDIP-------------LLANHLLRQA-----------------------AERHKPFVRAFSTDAMKRLMTA----- 347 (444)
T ss_pred hccccHH-------------HHHHHHHHHH-----------------------HHHhCCCCCCcCHHHHHHHHhC-----
Confidence 5555555 7788887642 2221 1235999999999977
Q ss_pred hcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 695 RRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 695 ~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
.|||| +|||+++++.+...+. ...|+.+|+...
T Consensus 348 ---~WpgN--------vreL~~~i~~~~~~~~---~~~i~~~~l~~~ 380 (444)
T PRK15115 348 ---SWPGN--------VRQLVNVIEQCVALTS---SPVISDALVEQA 380 (444)
T ss_pred ---CCCCh--------HHHHHHHHHHHHHhCC---CCccChhhhhhh
Confidence 99999 8999999999776554 567777776543
No 46
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.71 E-value=3.1e-17 Score=151.95 Aligned_cols=124 Identities=31% Similarity=0.456 Sum_probs=83.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC----eeccCC-CcccccceeeeecCCCCCccccccccccccCCceeeccccccC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG----IYTSGK-GSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKM 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~----~~t~g~-~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm 555 (806)
||||.|.||+|||++++++++.+... .+|+.. ++...|.... +..+++|.+..|.+. .+|+++|||++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~---~~~~~~f~~~~GPif---~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVY---DQETGEFEFRPGPIF---TNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEE---ETTTTEEEEEE-TT----SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeee---ccCCCeeEeecChhh---hceeeecccccC
Confidence 89999999999999999999998653 233221 3333444333 444578888888776 479999999999
Q ss_pred CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcc
Q 003637 556 SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 556 ~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRF 620 (806)
++..|++|+|+|+++.|++. |....++..+.||||.||.+.. ..+.||+++++||
T Consensus 75 ppktQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e~~--------Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVEQE--------GTYPLPEAQLDRF 129 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--S--------------HHHHTTS
T ss_pred CHHHHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccccC--------ceecCCHHHhccc
Confidence 99999999999999999965 8899999999999999998654 4789999999999
No 47
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.70 E-value=1.1e-17 Score=156.90 Aligned_cols=110 Identities=35% Similarity=0.615 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcccccccccCCcccccchhhHHHHHHHHHHcCCcEEEEechhhhccCHHHHHHHHhCHHHHHHHHHHHH
Q 003637 130 VKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIVL 209 (806)
Q Consensus 130 ~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~fd~~L~~~l~~~P~e~l~~~d~al 209 (806)
|+++|++||++|+. ..+|+++|++|+..+..+|.||++||.+|+++||.+|+++|.+++++|+.|+
T Consensus 1 i~~~F~~Fl~~f~~--------------~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~ 66 (121)
T PF14551_consen 1 IKRRFREFLREFKE--------------EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEAL 66 (121)
T ss_dssp --HHHHHHCCCH-T--------------S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHH
T ss_pred ChHHHHHHHHcCCC--------------chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999875 3689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhC--------cc---cCCcEEEEEeecCCccCCCCCCccCCCceEEEEE
Q 003637 210 MDIVSLIN--------PL---FEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKG 253 (806)
Q Consensus 210 ~~~~~~~~--------~~---~~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~G 253 (806)
++++.++. +. ..+.++|+++|++...++|+|++.+|||||+|+|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 67 KEVVKELFPSEQQSSFPPELKRRKEIQVRFYNLPKSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp HHCHHTT----------GCCTTTS--EEEEES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred HHHHHHhhhhhcccCCchhhccceeEEEEEcCCCCCcCcCCCChHHCCCEEEEeC
Confidence 99987642 11 2468999999999999999999999999999999
No 48
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.69 E-value=5.5e-16 Score=178.38 Aligned_cols=203 Identities=22% Similarity=0.320 Sum_probs=153.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCceee
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGICC 548 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GIl~ 548 (806)
.++|+.|++||||+.+|+++|..+.+. +.++..++|.+... +..++|......|.+..|++|++|
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~----~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 242 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRA----KGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCC----CCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEE
Confidence 499999999999999999999988775 66777777776521 112234444456889999999999
Q ss_pred ccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCCC----CCcccccccCCccccC
Q 003637 549 IDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYNP----RLSVIENIHLPPTLLS 618 (806)
Q Consensus 549 IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~~----~~~~~~~i~lp~~Lls 618 (806)
|||++.|+...|..|+++++++.+. +.|.....+.++++|+|+|.. .|.|+. .++.. .+.+||...+
T Consensus 243 ld~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~-~i~~ppLreR 319 (457)
T PRK11361 243 LDEIGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVI-HLILPPLRDR 319 (457)
T ss_pred EechhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhc
Confidence 9999999999999999999998775 556666778889999999976 455553 33343 6788877766
Q ss_pred cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCC
Q 003637 619 RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGN 698 (806)
Q Consensus 619 RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~ 698 (806)
+-|+. .|+.+++....... ....+.+++++.+.|..| .
T Consensus 320 ~~di~-------------~l~~~~l~~~~~~~---------------------~~~~~~~~~~a~~~L~~~--------~ 357 (457)
T PRK11361 320 REDIS-------------LLANHFLQKFSSEN---------------------QRDIIDIDPMAMSLLTAW--------S 357 (457)
T ss_pred hhhHH-------------HHHHHHHHHHHHHc---------------------CCCCCCcCHHHHHHHHcC--------C
Confidence 66655 67777776422110 011247999999999977 9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 699 FPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 699 ~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
|||| +|+|+++++.+...+. ...|+.+|+...+
T Consensus 358 wpgN--------v~eL~~~~~~~~~~~~---~~~i~~~~l~~~~ 390 (457)
T PRK11361 358 WPGN--------IRELSNVIERAVVMNS---GPIIFSEDLPPQI 390 (457)
T ss_pred CCCc--------HHHHHHHHHHHHHhCC---CCcccHHHChHhh
Confidence 9999 8999999998776554 6678888876544
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.69 E-value=1.5e-16 Score=160.96 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=120.9
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec-cCCCcccccceeee
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKGSSAVGLTAYV 523 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~~~~~glta~~ 523 (806)
.-+++||++++..+-..+-....... .-.|+||+||||+|||+||+.|++.....+.. +| .+.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~-------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg--------~~i- 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGE-------ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSG--------PAI- 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEEC--------CC--
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCC-------CcceEEEECCCccchhHHHHHHHhccCCCeEeccc--------hhh-
Confidence 34678999999865433322110000 01299999999999999999999999655322 11 100
Q ss_pred ecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEe-ecce---eeeec-CceEEEEecCCCCC
Q 003637 524 TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIA-KAGI---IASLN-ARTSVLACANPSGS 598 (806)
Q Consensus 524 ~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~-kag~---~~~l~-~~~siIAAaNp~~g 598 (806)
.. .++ +..-.-.+..+-|+|||||++++...|..|+.+||++.+.+- ..|. ...++ .+|++|+|++.
T Consensus 87 -~k--~~d--l~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr--- 158 (233)
T PF05496_consen 87 -EK--AGD--LAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR--- 158 (233)
T ss_dssp --S--CHH--HHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS---
T ss_pred -hh--HHH--HHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc---
Confidence 00 011 110011234567999999999999999999999999998652 2221 22222 45999999983
Q ss_pred CCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCC
Q 003637 599 RYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKL 678 (806)
Q Consensus 599 ~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~l 678 (806)
.-.|+++|.+||-+++ ....++.++|.+++..+.......+
T Consensus 159 ----------~g~ls~pLrdRFgi~~-----------------------------~l~~Y~~~el~~Iv~r~a~~l~i~i 199 (233)
T PF05496_consen 159 ----------AGLLSSPLRDRFGIVL-----------------------------RLEFYSEEELAKIVKRSARILNIEI 199 (233)
T ss_dssp ----------GCCTSHCCCTTSSEEE-----------------------------E----THHHHHHHHHHCCHCTT-EE
T ss_pred ----------ccccchhHHhhcceec-----------------------------chhcCCHHHHHHHHHHHHHHhCCCc
Confidence 3357799999997762 2345667777777777666677789
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHH
Q 003637 679 SDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALA 725 (806)
Q Consensus 679 s~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A 725 (806)
++++...|.+. . .-|+|-...++|.+...|
T Consensus 200 ~~~~~~~Ia~r-----s------------rGtPRiAnrll~rvrD~a 229 (233)
T PF05496_consen 200 DEDAAEEIARR-----S------------RGTPRIANRLLRRVRDFA 229 (233)
T ss_dssp -HHHHHHHHHC-----T------------TTSHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHh-----c------------CCChHHHHHHHHHHHHHH
Confidence 99998888742 1 135899988888764433
No 50
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.67 E-value=1.9e-15 Score=174.18 Aligned_cols=204 Identities=28% Similarity=0.424 Sum_probs=153.8
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GIl 547 (806)
++++++.|++||||+.+++++|..+++. +.++..++|..... +..++|...-..|.+..|++|++
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~----~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 232 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRA----NGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTL 232 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCC----CCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeE
Confidence 4599999999999999999999999875 56677777665421 11223333334677889999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCcccc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~Ll 617 (806)
||||++.|+...|..|+++++++.+. +.|.....+.++++|+++|.. .+.|+ +++++. .+.|||...
T Consensus 233 ~l~ei~~l~~~~q~~ll~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr~ 309 (463)
T TIGR01818 233 FLDEIGDMPLDAQTRLLRVLADGEFY--RVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVI-RIHLPPLRE 309 (463)
T ss_pred EEEchhhCCHHHHHHHHHHHhcCcEE--ECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcc-eecCCCccc
Confidence 99999999999999999999998876 456556667788999999975 35565 334443 678887776
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcC
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRG 697 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~ 697 (806)
++-|+. .|++|++........ ...+.++++|.+.|..|
T Consensus 310 R~~Di~-------------~l~~~~l~~~~~~~~---------------------~~~~~~~~~a~~~L~~~-------- 347 (463)
T TIGR01818 310 RREDIP-------------RLARHFLALAARELD---------------------VEPKLLDPEALERLKQL-------- 347 (463)
T ss_pred chhhHH-------------HHHHHHHHHHHHHhC---------------------CCCCCcCHHHHHHHHhC--------
Confidence 666665 778888764321110 11246999999999977
Q ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 698 NFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 698 ~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.|||| +|+|+++++.+...+. ...|+.+|+...+
T Consensus 348 ~wpgN--------vreL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 348 RWPGN--------VRQLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred CCCCh--------HHHHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 99999 8999999999877665 6788988887554
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.65 E-value=2.6e-15 Score=171.97 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=153.3
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec-----------CCCCCccccccccccccCCcee
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK-----------DPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k-----------~~~~ge~~le~Gal~lAd~GIl 547 (806)
+.++++.|++||||+.+++++|..+++. +.++..++|.+.... ..++|......|.+..|++|++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~----~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 237 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARS----EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCC----CCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEE
Confidence 3589999999999999999999999876 567777777754211 1112222334678899999999
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCC----CCCcccccccCCcccc
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYN----PRLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~----~~~~~~~~i~lp~~Ll 617 (806)
||||++.|+...|..|+.+++++.+. +.|.....+.++++|+|++.. .++|+ +.++.. .+.+||...
T Consensus 238 ~ldei~~l~~~~q~~l~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~-~i~~ppLre 314 (441)
T PRK10365 238 FLDEIGDISPMMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV-AIEVPSLRQ 314 (441)
T ss_pred EEeccccCCHHHHHHHHHHHccCcEE--eCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhh
Confidence 99999999999999999999999875 556666777889999999875 45555 234443 788998887
Q ss_pred CcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHh
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IHPKLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 618 sRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~--~~p~ls~ea~~~L~~~y~~lR~ 695 (806)
++-|+. .|++|++..+ +++. ..+.+++++.+.|..+
T Consensus 315 R~~Di~-------------~l~~~~l~~~-----------------------~~~~~~~~~~~~~~a~~~L~~~------ 352 (441)
T PRK10365 315 RREDIP-------------LLAGHFLQRF-----------------------AERNRKAVKGFTPQAMDLLIHY------ 352 (441)
T ss_pred cchhHH-------------HHHHHHHHHH-----------------------HHHhCCCCCCcCHHHHHHHHhC------
Confidence 777776 7788887642 2221 1245999999999977
Q ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 696 RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 696 ~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
.|||| +|+|+++++.+...+. ...++.+|+...
T Consensus 353 --~wpgN--------~reL~~~~~~~~~~~~---~~~i~~~~l~~~ 385 (441)
T PRK10365 353 --DWPGN--------IRELENAVERAVVLLT---GEYISERELPLA 385 (441)
T ss_pred --CCCCH--------HHHHHHHHHHHHHhCC---CCccchHhCchh
Confidence 99999 8999999998766543 567888887654
No 52
>CHL00181 cbbX CbbX; Provisional
Probab=99.65 E-value=4.6e-16 Score=167.27 Aligned_cols=227 Identities=18% Similarity=0.132 Sum_probs=138.9
Q ss_pred HHHHHHhhcccccchhhhHHHHh----hhhcCCccccCCCCCc-cccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 437 YETLTRSLAPNIWELDDVKKGLL----CQLFGGNALKLPSGAS-FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 437 ~~~l~~si~P~I~G~e~vK~~il----l~L~g~~~~~~~~~~~-~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
.+.+.+.+.+.++|++.+|+.|. +..+....+. .|.. .....|+||+|+||||||++|+++++.+...-+...
T Consensus 14 ~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~--~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 14 IQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKN--LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 45677888899999999999764 1222221111 1222 224579999999999999999999988643211111
Q ss_pred CCcccccceeeeecCCCCCccc-cccccccccCCceeeccccccC---------CHHHHHHHHHHHhhcEEEEeecceee
Q 003637 512 KGSSAVGLTAYVTKDPETGETV-LESGALVLSDRGICCIDEFDKM---------SESARSMLHEVMEQQTVSIAKAGIIA 581 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~-le~Gal~lAd~GIl~IDEidkm---------~~~~~~~L~e~Me~q~isi~kag~~~ 581 (806)
..+..+..+..+.+ .-|+.. ...+.+..|.+||+||||++.+ ..+.+..|++.|+++.
T Consensus 92 ~~~~~v~~~~l~~~--~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~---------- 159 (287)
T CHL00181 92 GHLLTVTRDDLVGQ--YIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR---------- 159 (287)
T ss_pred CceEEecHHHHHHH--HhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC----------
Confidence 11222221111100 011110 0123455678999999999986 4567889999998642
Q ss_pred eecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHH
Q 003637 582 SLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLA 661 (806)
Q Consensus 582 ~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~ 661 (806)
.++.||+|+++..-. .-..+.|++.+||+..+.+.++ +.++...|+.+++..
T Consensus 160 ---~~~~vI~ag~~~~~~--------~~~~~np~L~sR~~~~i~F~~~-t~~el~~I~~~~l~~---------------- 211 (287)
T CHL00181 160 ---DDLVVIFAGYKDRMD--------KFYESNPGLSSRIANHVDFPDY-TPEELLQIAKIMLEE---------------- 211 (287)
T ss_pred ---CCEEEEEeCCcHHHH--------HHHhcCHHHHHhCCceEEcCCc-CHHHHHHHHHHHHHH----------------
Confidence 346788877643110 1124568999999877444333 455555666655542
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 662 TLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 662 ~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
....+++++.+.|.+++...+ ...|.|| +|.++++++.+.....
T Consensus 212 ------------~~~~l~~~~~~~L~~~i~~~~-~~~~~GN--------aR~vrn~ve~~~~~~~ 255 (287)
T CHL00181 212 ------------QQYQLTPEAEKALLDYIKKRM-EQPLFAN--------ARSVRNALDRARMRQA 255 (287)
T ss_pred ------------hcCCCChhHHHHHHHHHHHhC-CCCCCcc--------HHHHHHHHHHHHHHHH
Confidence 234578888887777665533 3467777 7999999977665443
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.65 E-value=4.6e-16 Score=167.32 Aligned_cols=226 Identities=21% Similarity=0.188 Sum_probs=137.3
Q ss_pred hhcccccchhhhHHHHh--hhhcCCccccCCCCCc-cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccc
Q 003637 443 SLAPNIWELDDVKKGLL--CQLFGGNALKLPSGAS-FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGL 519 (806)
Q Consensus 443 si~P~I~G~e~vK~~il--l~L~g~~~~~~~~~~~-~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~gl 519 (806)
.+.-+++|++.+|+.|. ..+.-........|.. .....|+||+||||||||++|+++++.+...-+....++..+..
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 33445689999999874 1111111111112222 22456999999999999999988887764321111112222222
Q ss_pred eeeeecCCCCCcc-ccccccccccCCceeeccccccC---------CHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 520 TAYVTKDPETGET-VLESGALVLSDRGICCIDEFDKM---------SESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 520 ta~~~k~~~~ge~-~le~Gal~lAd~GIl~IDEidkm---------~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
...+.. ..|+. ....+.+..|.+|++||||++.| ..+.+..|++.|+++. .++.+
T Consensus 99 ~~l~~~--~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~v 163 (284)
T TIGR02880 99 DDLVGQ--YIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-------------DDLVV 163 (284)
T ss_pred HHHhHh--hcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEE
Confidence 211110 01111 01123566678899999999987 3556789999998642 45778
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|+|+++..-. .-..+.+++.+||+..+.+.++ +.++...|+.++++.
T Consensus 164 I~a~~~~~~~--------~~~~~np~L~sR~~~~i~fp~l-~~edl~~I~~~~l~~------------------------ 210 (284)
T TIGR02880 164 ILAGYKDRMD--------SFFESNPGFSSRVAHHVDFPDY-SEAELLVIAGLMLKE------------------------ 210 (284)
T ss_pred EEeCCcHHHH--------HHHhhCHHHHhhCCcEEEeCCc-CHHHHHHHHHHHHHH------------------------
Confidence 8887754110 1134568999999866444333 355555666666542
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRL 729 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~ 729 (806)
....+++++.+.+.++ ...+....|+|| +|+|+++++.+......++
T Consensus 211 ----~~~~l~~~a~~~L~~~-l~~~~~~~~~GN--------~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 211 ----QQYRFSAEAEEAFADY-IALRRTQPHFAN--------ARSIRNAIDRARLRQANRL 257 (284)
T ss_pred ----hccccCHHHHHHHHHH-HHHhCCCCCCCh--------HHHHHHHHHHHHHHHHHHH
Confidence 2345788888888764 444555689999 8999999988877665554
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.61 E-value=2.6e-14 Score=147.24 Aligned_cols=215 Identities=22% Similarity=0.316 Sum_probs=154.6
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecC
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKD 526 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~ 526 (806)
+.+|++.+|..+-+.+-......... -||||+||||+|||+||..+|+.+.-.+-++..+
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~l-------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp------------- 86 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEAL-------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP------------- 86 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCc-------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc-------------
Confidence 34699999998887666553222221 2999999999999999999999985443221111
Q ss_pred CCCCccccccccc-----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEe--ec--ceeeeec-CceEEEEecCCC
Q 003637 527 PETGETVLESGAL-----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIA--KA--GIIASLN-ARTSVLACANPS 596 (806)
Q Consensus 527 ~~~ge~~le~Gal-----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~--ka--g~~~~l~-~~~siIAAaNp~ 596 (806)
...++|.+ .+..+-|+|||||+++++..-..|+.+||.-.+-|. +. .....++ +.|.+|+|+...
T Consensus 87 -----~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~ 161 (332)
T COG2255 87 -----ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRA 161 (332)
T ss_pred -----cccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccc
Confidence 11122211 234567999999999999999999999999777653 21 1122222 349999998743
Q ss_pred CCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCC
Q 003637 597 GSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHP 676 (806)
Q Consensus 597 ~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p 676 (806)
+ .|+.+|.+||-++. ....++.++|.+++....+....
T Consensus 162 G-------------~lt~PLrdRFGi~~-----------------------------rlefY~~~eL~~Iv~r~a~~l~i 199 (332)
T COG2255 162 G-------------MLTNPLRDRFGIIQ-----------------------------RLEFYTVEELEEIVKRSAKILGI 199 (332)
T ss_pred c-------------cccchhHHhcCCee-----------------------------eeecCCHHHHHHHHHHHHHHhCC
Confidence 3 46689999998883 23445667777777766667778
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 677 KLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 677 ~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
.+++++...|.+. .+ -|+|-...|+|...-.|..+....|+.+-+.+|+..+
T Consensus 200 ~i~~~~a~eIA~r-----SR------------GTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 200 EIDEEAALEIARR-----SR------------GTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred CCChHHHHHHHHh-----cc------------CCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 8999998888753 21 3689999999999999999999999998888887655
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.58 E-value=1.3e-14 Score=154.49 Aligned_cols=217 Identities=19% Similarity=0.186 Sum_probs=127.0
Q ss_pred ccchhhhHHHHh--hhhcCCccccCCCCCc-cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 448 IWELDDVKKGLL--CQLFGGNALKLPSGAS-FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 448 I~G~e~vK~~il--l~L~g~~~~~~~~~~~-~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
++|++.||+.|- ....-........|.. .....|+||+||||||||++|+.+++.+...-..+......+.+..
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~--- 84 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD--- 84 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH---
Confidence 579999998775 1111000010111222 2234699999999999999999999876321000011111111111
Q ss_pred cCCCCCccccc-----cccccccCCceeeccccccCC--------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEE
Q 003637 525 KDPETGETVLE-----SGALVLSDRGICCIDEFDKMS--------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLA 591 (806)
Q Consensus 525 k~~~~ge~~le-----~Gal~lAd~GIl~IDEidkm~--------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIA 591 (806)
..+.+..+ .+.+..|.+||+||||++.+. .+.+..|+..|++.. .++.+++
T Consensus 85 ---l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vil 148 (261)
T TIGR02881 85 ---LVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLIL 148 (261)
T ss_pred ---hhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEe
Confidence 11222211 234556778999999999876 346678888888642 3356667
Q ss_pred ecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHH
Q 003637 592 CANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYAR 671 (806)
Q Consensus 592 AaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar 671 (806)
+.++.... .-..++|++.+||+..+. +..++.++...++++++.
T Consensus 149 a~~~~~~~--------~~~~~~p~L~sRf~~~i~-f~~~~~~el~~Il~~~~~--------------------------- 192 (261)
T TIGR02881 149 AGYSDEMD--------YFLSLNPGLRSRFPISID-FPDYTVEELMEIAERMVK--------------------------- 192 (261)
T ss_pred cCCcchhH--------HHHhcChHHHhccceEEE-ECCCCHHHHHHHHHHHHH---------------------------
Confidence 66654321 123567899999976532 333344444444444432
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHh-cCCCCCCCCcccccCHHHHHHHHHHHHHHHHHh
Q 003637 672 KHIHPKLSDEAAEELTRGYVEMRR-RGNFPGSSKKVITATPRQIESLIRLSEALARIR 728 (806)
Q Consensus 672 ~~~~p~ls~ea~~~L~~~y~~lR~-~~~~~gn~~~~~~it~R~Leslirla~a~A~l~ 728 (806)
.....+++++.+.|.+++..++. ....+|| .|.+.+++..|......+
T Consensus 193 -~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn--------~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 193 -EREYKLTEEAKWKLREHLYKVDQLSSREFSN--------ARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred -HcCCccCHHHHHHHHHHHHHHHhccCCCCch--------HHHHHHHHHHHHHHHHHH
Confidence 23345899999999888776653 2233444 799999999987766544
No 56
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.7e-14 Score=148.38 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=123.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccC---CceeeccccccCC-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSD---RGICCIDEFDKMS- 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd---~GIl~IDEidkm~- 556 (806)
.|||+||||||||.|||++|+... ..|..+--+..+.+--..|.. +-...|.+|. ..|+||||||.+.
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~-------AtFIrvvgSElVqKYiGEGaR-lVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTD-------ATFIRVVGSELVQKYIGEGAR-LVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC-------ceEEEeccHHHHHHHhccchH-HHHHHHHHHhhcCCeEEEEechhhhhc
Confidence 799999999999999999998762 233333333333332111211 1123455553 4799999999763
Q ss_pred ----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhh
Q 003637 557 ----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIY 624 (806)
Q Consensus 557 ----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~ 624 (806)
.+.|..|+|.+.| -.|... ..++.||+|+|... -|.|+|++ |||=.
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~q------lDGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~DRk- 316 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQ------LDGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRFDRK- 316 (406)
T ss_pred ccccCCCCchHHHHHHHHHHHHh------ccCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcccce-
Confidence 4578899999887 223322 34688999999443 34577776 77755
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSK 704 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~ 704 (806)
+-+..|+.+...+|.+ .|.... +..+.+.= +.|...
T Consensus 317 IEfplPd~~gR~~Il~----IHtrkM----------------------~l~~dvd~---e~la~~--------------- 352 (406)
T COG1222 317 IEFPLPDEEGRAEILK----IHTRKM----------------------NLADDVDL---ELLARL--------------- 352 (406)
T ss_pred eecCCCCHHHHHHHHH----HHhhhc----------------------cCccCcCH---HHHHHh---------------
Confidence 4445777777666543 333221 11222222 233321
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 003637 705 KVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 705 ~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 747 (806)
.-++|-.++.+++--|-..|--..+..|+.+|+.+|++-+-.
T Consensus 353 -~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 353 -TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 012567899999999999998888999999999999876543
No 57
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.55 E-value=8.4e-14 Score=163.24 Aligned_cols=166 Identities=21% Similarity=0.271 Sum_probs=121.1
Q ss_pred cccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeec----ce----eeeecCceEEEEecCCCCCCCCCCCc
Q 003637 534 LESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKA----GI----IASLNARTSVLACANPSGSRYNPRLS 605 (806)
Q Consensus 534 le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~ka----g~----~~~l~~~~siIAAaNp~~g~~~~~~~ 605 (806)
+++|++..|++|++||||++.|++..|..|+++|+++.+.+... +. ....++++.+|+++|+..
T Consensus 217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l-------- 288 (637)
T PRK13765 217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA-------- 288 (637)
T ss_pred CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH--------
Confidence 38899999999999999999999999999999999999886321 01 345678899999999732
Q ss_pred ccccccCCccccCcchh---hhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc-----CCCC
Q 003637 606 VIENIHLPPTLLSRFDL---IYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH-----IHPK 677 (806)
Q Consensus 606 ~~~~i~lp~~LlsRFDl---i~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~-----~~p~ 677 (806)
...+.+.|.+||.. ..-+ ......+.+.+++|+++..+. ..+.
T Consensus 289 ---l~~~dpdL~~rfk~~~v~v~f--------------------------~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~ 339 (637)
T PRK13765 289 ---LENMHPALRSRIKGYGYEVYM--------------------------RDTMEDTPENRRKLVRFVAQEVKRDGKIPH 339 (637)
T ss_pred ---HHhhhHHHHHHhccCeEEEEc--------------------------ccccCCCHHHHHHHHHHHHHHhhhccCCCC
Confidence 12234667777742 1111 011223455666666655542 2457
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 678 LSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 678 ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
++++|...|.++|...-.. .....+..|+|..++|.|...|+...++.|+.+|+.+|+.
T Consensus 340 f~~eAVa~LI~~~~R~ag~-------r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 340 FDRDAVEEIIREAKRRAGR-------KGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CCHHHHHHHHHHHHHHhCC-------ccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 9999999999998643211 2234466899999999999999999999999999998874
No 58
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.54 E-value=1e-14 Score=144.50 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=88.1
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-----------cCCCCCccccccccccccCCceee
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGICC 548 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-----------k~~~~ge~~le~Gal~lAd~GIl~ 548 (806)
.||||+|++||||+.+|++||+.++|. ..++..++|..... ++.++|......|.+..|++|++|
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~----~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~ 98 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRK----NGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLF 98 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTT----TS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcc----cCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEe
Confidence 599999999999999999999999887 77888888886531 122233334466999999999999
Q ss_pred ccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 549 IDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 549 IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
||||+.|++..|..|+++|+++++. +.|.....+.+++||+++|..
T Consensus 99 Ld~I~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 99 LDEIEDLPPELQAKLLRVLEEGKFT--RLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEE--CCTSSSEEE--EEEEEEESS-
T ss_pred ecchhhhHHHHHHHHHHHHhhchhc--cccccccccccceEEeecCcC
Confidence 9999999999999999999999886 556666778899999999954
No 59
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=1e-13 Score=155.53 Aligned_cols=146 Identities=20% Similarity=0.208 Sum_probs=93.1
Q ss_pred hhcccccchhhhHHHHhhhhcCC---ccccCCC-CCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccc
Q 003637 443 SLAPNIWELDDVKKGLLCQLFGG---NALKLPS-GASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVG 518 (806)
Q Consensus 443 si~P~I~G~e~vK~~ill~L~g~---~~~~~~~-~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~g 518 (806)
.|...|+|++.+|+++..++... ....... ........|+||+||||||||++|+++|+.+... +..+.
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p-------f~~id 140 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP-------FAIAD 140 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC-------ceecc
Confidence 33444899999999987665321 1000000 0122345699999999999999999999987443 33333
Q ss_pred ceeeeecCCCCCc---cc------cccccccccCCceeeccccccCCHH--------------HHHHHHHHHhhcEEEEe
Q 003637 519 LTAYVTKDPETGE---TV------LESGALVLSDRGICCIDEFDKMSES--------------ARSMLHEVMEQQTVSIA 575 (806)
Q Consensus 519 lta~~~k~~~~ge---~~------le~Gal~lAd~GIl~IDEidkm~~~--------------~~~~L~e~Me~q~isi~ 575 (806)
++.....+ ..|+ .. ...+.+..+.+||+||||||+++.. .|++|+++||...+.+.
T Consensus 141 ~~~l~~~g-yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 141 ATTLTEAG-YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred hhhcccCC-cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 32211100 0111 01 1123455678899999999999753 89999999997777765
Q ss_pred ecceeeeecCceEEEEecCCC
Q 003637 576 KAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 576 kag~~~~l~~~~siIAAaNp~ 596 (806)
..|....-...+.+|+|+|..
T Consensus 220 ~~gg~~~~~~~~~~i~t~nil 240 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNIL 240 (412)
T ss_pred CCCCcCcCCCCeEEeccCCce
Confidence 444433334678899999984
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.50 E-value=3.7e-13 Score=148.20 Aligned_cols=219 Identities=22% Similarity=0.306 Sum_probs=139.2
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecC
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKD 526 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~ 526 (806)
.++|++.+++.+...+....... ...-|+||+||||||||++|+.+++.+...+.....+ .. .+
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~-------~~-~~- 89 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRG-------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGP-------AL-EK- 89 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecc-------cc-cC-
Confidence 45799999988775554321000 1123899999999999999999999885432211100 00 00
Q ss_pred CCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEE--eeccee----eeecCceEEEEecCCCCCCC
Q 003637 527 PETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSI--AKAGII----ASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 527 ~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi--~kag~~----~~l~~~~siIAAaNp~~g~~ 600 (806)
.+ .+..-.-.+..++++|||||+.++...+..|+.+|+...+.+ .++... ..+ ..+.+|+|+|+..
T Consensus 90 --~~--~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l-~~~~li~at~~~~--- 161 (328)
T PRK00080 90 --PG--DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL-PPFTLIGATTRAG--- 161 (328)
T ss_pred --hH--HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC-CCceEEeecCCcc---
Confidence 00 111000113467899999999999988899999999876543 221111 122 3478888888432
Q ss_pred CCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCH
Q 003637 601 NPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSD 680 (806)
Q Consensus 601 ~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ 680 (806)
.++++|.+||.+.+ -++. ++.+.+.+++..........+++
T Consensus 162 ----------~l~~~L~sRf~~~~-~l~~----------------------------~~~~e~~~il~~~~~~~~~~~~~ 202 (328)
T PRK00080 162 ----------LLTSPLRDRFGIVQ-RLEF----------------------------YTVEELEKIVKRSARILGVEIDE 202 (328)
T ss_pred ----------cCCHHHHHhcCeee-ecCC----------------------------CCHHHHHHHHHHHHHHcCCCcCH
Confidence 35578889996552 2233 34444444444333334567899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 681 EAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 681 ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
++.+.|.+.. .| ++|.+..+++.+...|.......|+.+++.+++..+
T Consensus 203 ~~~~~ia~~~---------~G--------~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 203 EGALEIARRS---------RG--------TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHc---------CC--------CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9998888641 12 269899999888877776666789999999888654
No 61
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.50 E-value=3.6e-14 Score=136.27 Aligned_cols=129 Identities=25% Similarity=0.424 Sum_probs=88.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeec--cCCCcccccceeeeecCCCCCcccccccccccc--CCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYT--SGKGSSAVGLTAYVTKDPETGETVLESGALVLS--DRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t--~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA--d~GIl~IDEidkm~ 556 (806)
||||+|+||||||++++++++.+...++. ....++...+.....-. .+......|.+..+ .+++|+||||++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 69999999999999999999999765432 12223333333222211 34555666777655 68999999999999
Q ss_pred HHHHHHHHHHHhhcEEEEeecceeeeecC------ceEEEEecCCCCCCCCCCCcccccccCCccccCcc
Q 003637 557 ESARSMLHEVMEQQTVSIAKAGIIASLNA------RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 557 ~~~~~~L~e~Me~q~isi~kag~~~~l~~------~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRF 620 (806)
++.+..|+.+++++.+.+...+.....+. .+.+|||+||.. . ..-.++++++|||
T Consensus 79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~--------~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-K--------GRKELSPALLDRF 139 (139)
T ss_dssp HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-C--------CcCcCCHHHHhhC
Confidence 99999999999999988765554444443 499999999877 1 2457889999998
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=5e-13 Score=157.86 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=139.1
Q ss_pred hhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCcccccc
Q 003637 443 SLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSAVGL 519 (806)
Q Consensus 443 si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~~gl 519 (806)
.-++.|+|++...+.++-.+.... ..|++|+||||||||++|+.+++.+.+.- +..+.++..+++
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~------------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPF------------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 344568899998887765543221 23899999999999999999998874311 111233344433
Q ss_pred eeeee-------------cC----------CCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEee
Q 003637 520 TAYVT-------------KD----------PETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAK 576 (806)
Q Consensus 520 ta~~~-------------k~----------~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~k 576 (806)
+.... .+ ...|......|.+..+++|++||||++.|+...|..|+.+|+++.+.+..
T Consensus 219 ~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~ 298 (615)
T TIGR02903 219 TTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSS 298 (615)
T ss_pred hhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeec
Confidence 32100 00 00111123345667788999999999999999999999999999876542
Q ss_pred cce---------------eeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHH
Q 003637 577 AGI---------------IASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKH 641 (806)
Q Consensus 577 ag~---------------~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~ 641 (806)
... ....++++.++++++... ..++++|.+||..+. +...+.+.-..|+++
T Consensus 299 ~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~------------~~l~~aLrSR~~~i~--~~pls~edi~~Il~~ 364 (615)
T TIGR02903 299 SYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP------------EEINPALRSRCAEVF--FEPLTPEDIALIVLN 364 (615)
T ss_pred ceeccCCcccchhhhhhcccCccceEEEEEeccccc------------cccCHHHHhceeEEE--eCCCCHHHHHHHHHH
Confidence 210 112345677777766322 135688999997542 223334444444444
Q ss_pred HHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHH
Q 003637 642 IVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLS 721 (806)
Q Consensus 642 il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla 721 (806)
.+. .....+++++.+.|.++ .|++ |...+++..+
T Consensus 365 ~a~----------------------------~~~v~ls~eal~~L~~y--------s~~g----------Rraln~L~~~ 398 (615)
T TIGR02903 365 AAE----------------------------KINVHLAAGVEELIARY--------TIEG----------RKAVNILADV 398 (615)
T ss_pred HHH----------------------------HcCCCCCHHHHHHHHHC--------CCcH----------HHHHHHHHHH
Confidence 332 22345889999988875 6653 3333444333
Q ss_pred HHHHHHh--------cCCCCCHhhHHHHHHH
Q 003637 722 EALARIR--------LSELVEKHDVEEAFRL 744 (806)
Q Consensus 722 ~a~A~l~--------~~~~V~~~Dv~~ai~l 744 (806)
...+..+ ....|+.+|+.+++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 399 YGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 3332111 1236899999999854
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=5.2e-13 Score=145.54 Aligned_cols=220 Identities=22% Similarity=0.273 Sum_probs=135.2
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecC
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKD 526 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~ 526 (806)
.++|+++++..+...+.+.... ....-|++|+||||||||++|+.+++.+....+.. ..+.. .
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~-------~~~~~--~- 67 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT-------SGPAL--E- 67 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe-------ccchh--c-
Confidence 5689999998876555422100 01113899999999999999999999875432211 11100 0
Q ss_pred CCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEE--eecc---eeeeecCceEEEEecCCCCCCCC
Q 003637 527 PETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSI--AKAG---IIASLNARTSVLACANPSGSRYN 601 (806)
Q Consensus 527 ~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi--~kag---~~~~l~~~~siIAAaNp~~g~~~ 601 (806)
..+..... .-.+..+.++||||++.++++.+..|+.+|+.....+ ..+. ........+.+++++|..
T Consensus 68 -~~~~l~~~--l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~----- 139 (305)
T TIGR00635 68 -KPGDLAAI--LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA----- 139 (305)
T ss_pred -CchhHHHH--HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc-----
Confidence 00111000 0012346799999999999999999999999765432 1111 111112237788887732
Q ss_pred CCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHH
Q 003637 602 PRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDE 681 (806)
Q Consensus 602 ~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~e 681 (806)
-.+++++.+||.++ +.++.+ +.+.+++++..........++++
T Consensus 140 --------~~l~~~l~sR~~~~-~~l~~l----------------------------~~~e~~~il~~~~~~~~~~~~~~ 182 (305)
T TIGR00635 140 --------GMLTSPLRDRFGII-LRLEFY----------------------------TVEELAEIVSRSAGLLNVEIEPE 182 (305)
T ss_pred --------cccCHHHHhhcceE-EEeCCC----------------------------CHHHHHHHHHHHHHHhCCCcCHH
Confidence 23567889999654 223333 33444444443333345578999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 682 AAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 682 a~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
+.+.|.+.. .| .+|.+..+++.+...|.......|+.+++.+++..+
T Consensus 183 al~~ia~~~---------~G--------~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 183 AALEIARRS---------RG--------TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHh---------CC--------CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 998887652 11 258888888877777766666779999999888653
No 64
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.49 E-value=2.3e-13 Score=151.94 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=92.3
Q ss_pred HHHHhhcccccchhhhHHHHhhhhcCC---ccc--cCC-CCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCC
Q 003637 439 TLTRSLAPNIWELDDVKKGLLCQLFGG---NAL--KLP-SGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK 512 (806)
Q Consensus 439 ~l~~si~P~I~G~e~vK~~ill~L~g~---~~~--~~~-~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~ 512 (806)
.|.+.+...|+|++++|+.+..++... ... ... ......+..|+||+||||||||++|+++|+.+....
T Consensus 70 ~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf----- 144 (413)
T TIGR00382 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF----- 144 (413)
T ss_pred HHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe-----
Confidence 455566677899999999998776311 000 000 011123446999999999999999999998874332
Q ss_pred CcccccceeeeecCCCCCc---------cccccccccccCCceeeccccccCCH--------------HHHHHHHHHHhh
Q 003637 513 GSSAVGLTAYVTKDPETGE---------TVLESGALVLSDRGICCIDEFDKMSE--------------SARSMLHEVMEQ 569 (806)
Q Consensus 513 ~~~~~glta~~~k~~~~ge---------~~le~Gal~lAd~GIl~IDEidkm~~--------------~~~~~L~e~Me~ 569 (806)
..+..+.....+ ..|+ .....+.+..+.+||+||||+|++.. ..|++|+++||.
T Consensus 145 --~~~da~~L~~~g-yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG 221 (413)
T TIGR00382 145 --AIADATTLTEAG-YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEG 221 (413)
T ss_pred --EEechhhccccc-cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhc
Confidence 222222111000 1111 01123455677889999999999987 589999999974
Q ss_pred cEEEEeecceeeeecCceEEEEecCC
Q 003637 570 QTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 570 q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
..+.+...|....-...+.+|.|+|.
T Consensus 222 ~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 222 TVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred cceecccCCCccccCCCeEEEEcCCc
Confidence 33333333332222356889999998
No 65
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1e-13 Score=158.10 Aligned_cols=201 Identities=26% Similarity=0.404 Sum_probs=122.7
Q ss_pred HHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccc
Q 003637 440 LTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGL 519 (806)
Q Consensus 440 l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~gl 519 (806)
..+-+--.-||++.||..|+-.|.-+...+ ...| .-+||+||||+|||.|++.||+.+.|.. +...|
T Consensus 317 a~~iLd~dHYGLekVKeRIlEyLAV~~l~~-----~~kG-pILcLVGPPGVGKTSLgkSIA~al~Rkf-------vR~sL 383 (782)
T COG0466 317 AEKILDKDHYGLEKVKERILEYLAVQKLTK-----KLKG-PILCLVGPPGVGKTSLGKSIAKALGRKF-------VRISL 383 (782)
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHHhc-----cCCC-cEEEEECCCCCCchhHHHHHHHHhCCCE-------EEEec
Confidence 345567788999999999983333221111 1122 2689999999999999999999997753 33333
Q ss_pred eeeeecCC--CCCcccc----ccccccc------cCCceeeccccccCCHHHH----HHHHHHHh-hcEEEEeec--cee
Q 003637 520 TAYVTKDP--ETGETVL----ESGALVL------SDRGICCIDEFDKMSESAR----SMLHEVME-QQTVSIAKA--GII 580 (806)
Q Consensus 520 ta~~~k~~--~~ge~~l----e~Gal~l------Ad~GIl~IDEidkm~~~~~----~~L~e~Me-~q~isi~ka--g~~ 580 (806)
... +|. ..|...- -+|.+.. ..+-+++|||||||..+.| ++|+|+++ +|.-++.-. ...
T Consensus 384 GGv--rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~ 461 (782)
T COG0466 384 GGV--RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVP 461 (782)
T ss_pred Ccc--ccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCc
Confidence 322 221 1122111 1344332 2457899999999987644 89999996 343332211 112
Q ss_pred eeecCceEEEEecCCCCCCCCCCCccccccc-CCccccCcchhhhhhccCCChHHHHHHHH-HHHHhhhcCCCCccCCCC
Q 003637 581 ASLNARTSVLACANPSGSRYNPRLSVIENIH-LPPTLLSRFDLIYLILDKADEQTDRRLAK-HIVSLHFENPENSEQGVL 658 (806)
Q Consensus 581 ~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~-lp~~LlsRFDli~il~d~~~~~~d~~la~-~il~~~~~~~~~~~~~~i 658 (806)
..| ..+.+||||| .++ +|.||++|+++| -+..|.. ++-.+||+ |++........ +
T Consensus 462 yDL-S~VmFiaTAN--------------sl~tIP~PLlDRMEiI-~lsgYt~-~EKl~IAk~~LiPk~~~~~g------L 518 (782)
T COG0466 462 YDL-SKVMFIATAN--------------SLDTIPAPLLDRMEVI-RLSGYTE-DEKLEIAKRHLIPKQLKEHG------L 518 (782)
T ss_pred cch-hheEEEeecC--------------ccccCChHHhcceeee-eecCCCh-HHHHHHHHHhcchHHHHHcC------C
Confidence 222 3589999999 554 999999999877 3344444 44445554 33332211111 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003637 659 DLATLTAYVSYARKHIHPKLSDEAAEELTRGYV 691 (806)
Q Consensus 659 ~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~ 691 (806)
..-...++++|+..|+++|.
T Consensus 519 -------------~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 519 -------------KKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred -------------CccceeecHHHHHHHHHHHh
Confidence 00123589999999999994
No 66
>PHA02244 ATPase-like protein
Probab=99.44 E-value=1.1e-12 Score=142.71 Aligned_cols=142 Identities=17% Similarity=0.262 Sum_probs=99.8
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccc--ccCCceeeccccccCC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALV--LSDRGICCIDEFDKMS 556 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~--lAd~GIl~IDEidkm~ 556 (806)
+.||||.||||||||++|+++++.+.+..++...-.....+...+ + ..|.| +.|.+. .+.+|+|+||||+.++
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i--~-~~g~~--~dgpLl~A~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI--D-ANGKF--HETPFYEAFKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc--c-ccccc--cchHHHHHhhcCCEEEEeCcCcCC
Confidence 349999999999999999999999876655432111111111111 0 12222 334443 4578999999999999
Q ss_pred HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCC
Q 003637 557 ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKAD 631 (806)
Q Consensus 557 ~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~ 631 (806)
++.+..|+.+++++.+. ..+.....+.++++|||+|+....|+.... ..-.+++++++||- .+-+|++.
T Consensus 194 p~vq~~L~~lLd~r~l~--l~g~~i~~h~~FRlIATsN~~~~G~~~~y~--G~k~L~~AllDRFv--~I~~dyp~ 262 (383)
T PHA02244 194 PEALIIINSAIANKFFD--FADERVTAHEDFRVISAGNTLGKGADHIYV--ARNKIDGATLDRFA--PIEFDYDE 262 (383)
T ss_pred HHHHHHHHHHhccCeEE--ecCcEEecCCCEEEEEeeCCCccCcccccC--CCcccCHHHHhhcE--EeeCCCCc
Confidence 99999999999998766 446667778899999999997655543221 24578899999993 35567765
No 67
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.43 E-value=8.2e-13 Score=159.34 Aligned_cols=241 Identities=24% Similarity=0.316 Sum_probs=139.0
Q ss_pred HHHHhhcccccchhhhHHHHhhhhc--CCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc--
Q 003637 439 TLTRSLAPNIWELDDVKKGLLCQLF--GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS-- 514 (806)
Q Consensus 439 ~l~~si~P~I~G~e~vK~~ill~L~--g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~-- 514 (806)
...+-+...+||++.+|+.|+-.|. .... ..++. .++|+||||+|||++++.+++.+.+..+....+.
T Consensus 315 ~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~-~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~ 386 (784)
T PRK10787 315 QAQEILDTDHYGLERVKDRILEYLAVQSRVN-------KIKGP-ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVR 386 (784)
T ss_pred HHHHHhhhhccCHHHHHHHHHHHHHHHHhcc-------cCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 3444566779999999999983333 2211 12233 6999999999999999999999877543211100
Q ss_pred ccccceeeeecCCCCCcccccccccc------ccCCceeeccccccCCHHH----HHHHHHHHhh-cEEEEeec--ceee
Q 003637 515 SAVGLTAYVTKDPETGETVLESGALV------LSDRGICCIDEFDKMSESA----RSMLHEVMEQ-QTVSIAKA--GIIA 581 (806)
Q Consensus 515 ~~~glta~~~k~~~~ge~~le~Gal~------lAd~GIl~IDEidkm~~~~----~~~L~e~Me~-q~isi~ka--g~~~ 581 (806)
....+... +....|. .+|.+. ...+.+++|||||++..+. +++|+++|+. |..++... .+..
T Consensus 387 d~~~i~g~--~~~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 387 DEAEIRGH--RRTYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred CHHHhccc--hhccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccc
Confidence 00000000 0000010 123221 1235699999999999875 4899999985 44443221 1112
Q ss_pred eecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHH
Q 003637 582 SLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLA 661 (806)
Q Consensus 582 ~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~ 661 (806)
.+ .++.+|||+| ...||++|++||+++ .+...+++.-..|+++.+.-.
T Consensus 462 dl-s~v~~i~TaN--------------~~~i~~aLl~R~~ii--~~~~~t~eek~~Ia~~~L~~k--------------- 509 (784)
T PRK10787 462 DL-SDVMFVATSN--------------SMNIPAPLLDRMEVI--RLSGYTEDEKLNIAKRHLLPK--------------- 509 (784)
T ss_pred cC-CceEEEEcCC--------------CCCCCHHHhcceeee--ecCCCCHHHHHHHHHHhhhHH---------------
Confidence 22 4588999998 235899999999754 344555666667777665310
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH-HHHHH-HHhcC-----CCCC
Q 003637 662 TLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL-SEALA-RIRLS-----ELVE 734 (806)
Q Consensus 662 ~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl-a~a~A-~l~~~-----~~V~ 734 (806)
.+++. ........+++++.+.|.+.|. |. ..+|.|+.+|.- ++..+ ++-+. -.|+
T Consensus 510 ~~~~~---~l~~~~l~i~~~ai~~ii~~yt--~e-------------~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~ 571 (784)
T PRK10787 510 QIERN---ALKKGELTVDDSAIIGIIRYYT--RE-------------AGVRSLEREISKLCRKAVKQLLLDKSLKHIEIN 571 (784)
T ss_pred HHHHh---CCCCCeEEECHHHHHHHHHhCC--cc-------------cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeec
Confidence 01100 0011234689999999998663 22 225777666643 22222 22112 2577
Q ss_pred HhhHHHHH
Q 003637 735 KHDVEEAF 742 (806)
Q Consensus 735 ~~Dv~~ai 742 (806)
.+++.+.+
T Consensus 572 ~~~~~~~l 579 (784)
T PRK10787 572 GDNLHDYL 579 (784)
T ss_pred HHHHHHHh
Confidence 78877765
No 68
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.6e-13 Score=150.60 Aligned_cols=200 Identities=23% Similarity=0.356 Sum_probs=122.1
Q ss_pred hhcccccchhhhHHHHhh-hhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccccee
Q 003637 443 SLAPNIWELDDVKKGLLC-QLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTA 521 (806)
Q Consensus 443 si~P~I~G~e~vK~~ill-~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta 521 (806)
-+-..-||+++||+.||- ..+|..... .+| --+||+||||+|||.+++.||+.+.|..| .++.-|++.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs------~qG-kIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tD 476 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGS------VQG-KILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTD 476 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhccc------CCC-cEEEEeCCCCCCcccHHHHHHHHhCCceE----EEecccccc
Confidence 355677899999999983 333432211 222 25899999999999999999999999765 233344443
Q ss_pred eeecCCCCCcccc----ccccccc------cCCceeeccccccCCHH----HHHHHHHHHh-hcEEEEee--cceeeeec
Q 003637 522 YVTKDPETGETVL----ESGALVL------SDRGICCIDEFDKMSES----ARSMLHEVME-QQTVSIAK--AGIIASLN 584 (806)
Q Consensus 522 ~~~k~~~~ge~~l----e~Gal~l------Ad~GIl~IDEidkm~~~----~~~~L~e~Me-~q~isi~k--ag~~~~l~ 584 (806)
... ..|...- -+|.++. ..+-+++|||+||+... --++|+|+|+ +|.-++-. ..+...+
T Consensus 477 vAe---IkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL- 552 (906)
T KOG2004|consen 477 VAE---IKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL- 552 (906)
T ss_pred HHh---hcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch-
Confidence 211 1122111 2354433 35678999999999753 3489999996 23322211 1111112
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHH-HHhhhcCCCCccCCCCCHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHI-VSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~i-l~~~~~~~~~~~~~~i~~~~L 663 (806)
.++.+|||||- .-.||++|++|+.+| -+..|..++. .+||+.. +.+...... ++.
T Consensus 553 SkVLFicTAN~-------------idtIP~pLlDRMEvI-elsGYv~eEK-v~IA~~yLip~a~~~~g------l~~--- 608 (906)
T KOG2004|consen 553 SKVLFICTANV-------------IDTIPPPLLDRMEVI-ELSGYVAEEK-VKIAERYLIPQALKDCG------LKP--- 608 (906)
T ss_pred hheEEEEeccc-------------cccCChhhhhhhhee-eccCccHHHH-HHHHHHhhhhHHHHHcC------CCH---
Confidence 35889999993 336899999999887 4445554443 3555443 332211111 111
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYV 691 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~ 691 (806)
-+..++++|...|+++|.
T Consensus 609 ----------e~v~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 609 ----------EQVKISDDALLALIERYC 626 (906)
T ss_pred ----------HhcCccHHHHHHHHHHHH
Confidence 123589999999999983
No 69
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-12 Score=133.94 Aligned_cols=257 Identities=20% Similarity=0.278 Sum_probs=173.8
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCC-CCeeccCCCcccccceeee-----------ecCCCCCccccccccccccC
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSP-RGIYTSGKGSSAVGLTAYV-----------TKDPETGETVLESGALVLSD 543 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~p-r~~~t~g~~~~~~glta~~-----------~k~~~~ge~~le~Gal~lAd 543 (806)
+|+..+|||.||+|.|||-|++.|..+-. |..+ ...++.++|...- +|..++|...-+.|.+--||
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~--sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsad 282 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQF--SGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSAD 282 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhc--CCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCC
Confidence 45556999999999999999999876531 2222 3456666665432 56677888888899999999
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC------CCCCCC----CCcccccccCC
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYNP----RLSVIENIHLP 613 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~------~g~~~~----~~~~~~~i~lp 613 (806)
||.+|+|||..+..+.|+.|+.++|+..+. ..|.......++.+||.+-.. +|+|+. ++++. ++.||
T Consensus 283 ggmlfldeigelgadeqamllkaieekrf~--pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlw-tf~lp 359 (531)
T COG4650 283 GGMLFLDEIGELGADEQAMLLKAIEEKRFY--PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLP 359 (531)
T ss_pred CceEehHhhhhcCccHHHHHHHHHHhhccC--CCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhhee-eeecc
Confidence 999999999999999999999999998876 567777788899999988764 677763 33343 66888
Q ss_pred ccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 003637 614 PTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEM 693 (806)
Q Consensus 614 ~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~l 693 (806)
....++-|+- +..|.+|.+|--.. -....+..+.-+.|+.|+-. ++
T Consensus 360 gl~qr~edie--------pnldyelerha~~~-------g~~vrfntearra~l~fa~s-------pq------------ 405 (531)
T COG4650 360 GLRQRQEDIE--------PNLDYELERHASLT-------GDSVRFNTEARRAWLAFATS-------PQ------------ 405 (531)
T ss_pred ccccCccccC--------CCccHHHHHHHHhh-------CceeeeehHHHHHHHHhccC-------cc------------
Confidence 7777776654 22333444443211 11122333444444444321 11
Q ss_pred HhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHHHhhhccCCCCCchhhHhhhCCchh
Q 003637 694 RRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSAS 773 (806)
Q Consensus 694 R~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl~~~~~~~~~g~~d~~~~~~g~s~~ 773 (806)
..|.|| .|+|..-+-....+|. +..|+++-|++-|.-+..+.......+..|-+..+.. -...-
T Consensus 406 ---a~w~gn--------frelsasvtrmatlad---~grit~~~ve~ei~rlr~~w~~~~p~~l~~llg~~a~--aldlf 469 (531)
T COG4650 406 ---ATWRGN--------FRELSASVTRMATLAD---SGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAE--ALDLF 469 (531)
T ss_pred ---hhhccc--------HHHHhHHHHHHHHHhc---CCceeHHHHHHHHHHHHHHhhhcCchhhhhccccchh--hhhhH
Confidence 267777 7999877766555555 8889999999999888888776555544443332221 12334
Q ss_pred HHHHHHHHHHHHHH
Q 003637 774 ERMRRENMVSSTRN 787 (806)
Q Consensus 774 ~~~~~~~~~~~i~~ 787 (806)
.|..++.++.+.++
T Consensus 470 drmqle~v~~vcr~ 483 (531)
T COG4650 470 DRMQLEHVIAICRQ 483 (531)
T ss_pred HHHHHHHHHHHHHc
Confidence 66677777776653
No 70
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.6e-13 Score=144.74 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=133.2
Q ss_pred HHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHH
Q 003637 422 SKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 422 ~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~ 501 (806)
.|+++|-++-++|.-|.+| || ++|. .|||+||||||||.|||++|.
T Consensus 314 ~ELeEiVefLkdP~kftrL-----------------------GG---KLPK--------GVLLvGPPGTGKTlLARAvAG 359 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRL-----------------------GG---KLPK--------GVLLVGPPGTGKTLLARAVAG 359 (752)
T ss_pred HHHHHHHHHhcCcHHhhhc-----------------------cC---cCCC--------ceEEeCCCCCchhHHHHHhhc
Confidence 5677777777888888766 55 3333 699999999999999999999
Q ss_pred HCCCCeec-cCCCccc--ccceeeeecCCCCCccccccccccccCCceeeccccccCCHH----H----HHHHHHHHhhc
Q 003637 502 LSPRGIYT-SGKGSSA--VGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSES----A----RSMLHEVMEQQ 570 (806)
Q Consensus 502 ~~pr~~~t-~g~~~~~--~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~----~----~~~L~e~Me~q 570 (806)
.+.-..|. +|-.|.. +|..|.-+|+-+ ..+- .....|+||||||.+..+ + +..|++.+-+
T Consensus 360 EA~VPFF~~sGSEFdEm~VGvGArRVRdLF-------~aAk-~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvE- 430 (752)
T KOG0734|consen 360 EAGVPFFYASGSEFDEMFVGVGARRVRDLF-------AAAK-ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVE- 430 (752)
T ss_pred ccCCCeEeccccchhhhhhcccHHHHHHHH-------HHHH-hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHH-
Confidence 98665443 3333322 233332222210 0011 112479999999976432 2 2344444322
Q ss_pred EEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhc
Q 003637 571 TVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFE 648 (806)
Q Consensus 571 ~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~ 648 (806)
-.| ..-|..+.||||+|..+ .|.++|.+ |||.. +....||-.-..+|.++.++....
T Consensus 431 -----mDG--F~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~-v~Vp~PDv~GR~eIL~~yl~ki~~ 489 (752)
T KOG0734|consen 431 -----MDG--FKQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRH-VTVPLPDVRGRTEILKLYLSKIPL 489 (752)
T ss_pred -----hcC--cCcCCceEEEeccCChh-------------hhhHHhcCCCcccee-EecCCCCcccHHHHHHHHHhcCCc
Confidence 112 22356788999999543 23355554 88876 556777776667776666552110
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHh
Q 003637 649 NPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIR 728 (806)
Q Consensus 649 ~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~ 728 (806)
. ..++. +.|.+ . ..++|-.+|++++..|...|...
T Consensus 490 ~--------------------------~~VD~---~iiAR---------G-------T~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 490 D--------------------------EDVDP---KIIAR---------G-------TPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred c--------------------------cCCCH---hHhcc---------C-------CCCCchHHHHHHHHHHHHHHHhc
Confidence 0 01222 22321 1 23567899999999999999999
Q ss_pred cCCCCCHhhHHHHHH
Q 003637 729 LSELVEKHDVEEAFR 743 (806)
Q Consensus 729 ~~~~V~~~Dv~~ai~ 743 (806)
+...|+..|++.|-.
T Consensus 525 ga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 525 GAEMVTMKHLEFAKD 539 (752)
T ss_pred CcccccHHHHhhhhh
Confidence 999999999998864
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.7e-12 Score=139.86 Aligned_cols=163 Identities=23% Similarity=0.311 Sum_probs=105.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccc-ccc-ccCCceeeccccccCCHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESG-ALV-LSDRGICCIDEFDKMSES 558 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~G-al~-lAd~GIl~IDEidkm~~~ 558 (806)
+++|+||||||||+||+.|++..... +...+-+..-+++- . ..++.. ... ...+-|+|||||++++..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl--r-~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL--R-EIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH--H-HHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 89999999999999999999987443 33333332222211 0 112211 111 123468999999999999
Q ss_pred HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHH
Q 003637 559 ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRL 638 (806)
Q Consensus 559 ~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~l 638 (806)
.|.+|+..||.|+|. +|+||.... .+.|.++|+||. .+|.+
T Consensus 120 QQD~lLp~vE~G~ii---------------lIGATTENP-----------sF~ln~ALlSR~-~vf~l------------ 160 (436)
T COG2256 120 QQDALLPHVENGTII---------------LIGATTENP-----------SFELNPALLSRA-RVFEL------------ 160 (436)
T ss_pred hhhhhhhhhcCCeEE---------------EEeccCCCC-----------CeeecHHHhhhh-heeee------------
Confidence 999999999999876 777775322 356779999998 44444
Q ss_pred HHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc-------CCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 639 AKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH-------IHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 639 a~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~-------~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
++++.+.|++.+..|-.. ..+.+++++.++|...- .|. +
T Consensus 161 -----------------k~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s---------~GD--------~ 206 (436)
T COG2256 161 -----------------KPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS---------NGD--------A 206 (436)
T ss_pred -----------------ecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc---------Cch--------H
Confidence 333444444443332211 12347889999888651 122 6
Q ss_pred HHHHHHHHHHHHHHH
Q 003637 712 RQIESLIRLSEALAR 726 (806)
Q Consensus 712 R~Leslirla~a~A~ 726 (806)
|.+.++++++...++
T Consensus 207 R~aLN~LE~~~~~~~ 221 (436)
T COG2256 207 RRALNLLELAALSAE 221 (436)
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888776665
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.5e-11 Score=138.83 Aligned_cols=257 Identities=14% Similarity=0.148 Sum_probs=150.8
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc--------cc
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS--------AV 517 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~--------~~ 517 (806)
..++|++.+.+.|.-.+..+. . .+.+||+||||||||++|+.+++.+.-.....+.+.. ..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r---i--------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK---I--------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 356799999988776665541 1 1138999999999999999999987542110000000 00
Q ss_pred ccee-eeecCC--CCCccc---cccccc---cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 518 GLTA-YVTKDP--ETGETV---LESGAL---VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 518 glta-~~~k~~--~~ge~~---le~Gal---~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
|... ...-++ ..|--. +..... ......|++|||+++|+...+++|+..||+- +..+.
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~vi 153 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIV 153 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-------------CCceE
Confidence 0000 000010 001000 000000 1122359999999999999999999999972 23455
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++| +...|+++++||+..+ ....++.+.+.+|+.
T Consensus 154 FILaTt-------------e~~kI~~TI~SRCq~~------------------------------~f~~ls~~~i~~~L~ 190 (484)
T PRK14956 154 FILATT-------------EFHKIPETILSRCQDF------------------------------IFKKVPLSVLQDYSE 190 (484)
T ss_pred EEeecC-------------ChhhccHHHHhhhhee------------------------------eecCCCHHHHHHHHH
Confidence 666666 2456789999998433 334566777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
+.-......++++++++|.+.- .| ++|...+++..+.+.+ ...|+.++|.+.+.+....
T Consensus 191 ~i~~~Egi~~e~eAL~~Ia~~S---------~G--------d~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~~~~~ 249 (484)
T PRK14956 191 KLCKIENVQYDQEGLFWIAKKG---------DG--------SVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGYHGIE 249 (484)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------hHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCCCCHH
Confidence 6655555678999999998651 12 2799988887655432 3468999888876444333
Q ss_pred HHhhhccCCCC-Cch-----h--hHhhhCCchhHHHHHHHHHHHHHHHHHHH
Q 003637 749 MQQSATDHSTG-TID-----M--DLITTGVSASERMRRENMVSSTRNIIMEK 792 (806)
Q Consensus 749 l~~~~~~~~~g-~~d-----~--~~~~~g~s~~~~~~~~~~~~~i~~~~~~~ 792 (806)
+.....+.-.| .-+ . .++..|. .-+..+..+.+.+++++.-+
T Consensus 250 ~~~~l~~si~~~d~~~~al~~l~~l~~~G~--d~~~~~~~l~~~~r~l~~~~ 299 (484)
T PRK14956 250 FLTSFIKSLIDPDNHSKSLEILESLYQEGQ--DIYKFLWDSIEFTHTLNLIR 299 (484)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHh
Confidence 22222111111 111 1 1334443 23445667777778776555
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.36 E-value=3.2e-12 Score=143.64 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=120.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccccc---CCceeeccccccC--
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS---DRGICCIDEFDKM-- 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm-- 555 (806)
+|||+||||||||++|+++++.+....+. +.++....+....+++.+. ..+..| ..+|+||||+|.+
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~-------v~~~~l~~~~~g~~~~~i~-~~f~~a~~~~p~IlfiDEiD~l~~ 238 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIR-------VVGSELVQKFIGEGARLVR-ELFELAREKAPSIIFIDEIDAIAA 238 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEE-------eehHHHhHhhccchHHHHH-HHHHHHHhcCCeEEEEechhhhhc
Confidence 79999999999999999999988554321 1111111110001111111 122222 3479999999987
Q ss_pred ---------CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhh
Q 003637 556 ---------SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIY 624 (806)
Q Consensus 556 ---------~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~ 624 (806)
+...+..|.+.+.+-. +.. -..++.||||+|.. -.+++++++ |||..
T Consensus 239 ~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn~~-------------~~ld~allRpgRfd~~- 296 (389)
T PRK03992 239 KRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATNRI-------------DILDPAILRPGRFDRI- 296 (389)
T ss_pred ccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecCCh-------------hhCCHHHcCCccCceE-
Confidence 3445566666664311 110 12357899999943 245678876 99876
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSK 704 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~ 704 (806)
+.+..|+.+....|.+..+... .+.+.+. .+.|.+.
T Consensus 297 I~v~~P~~~~R~~Il~~~~~~~--------------------------~~~~~~~---~~~la~~--------------- 332 (389)
T PRK03992 297 IEVPLPDEEGRLEILKIHTRKM--------------------------NLADDVD---LEELAEL--------------- 332 (389)
T ss_pred EEECCCCHHHHHHHHHHHhccC--------------------------CCCCcCC---HHHHHHH---------------
Confidence 6678888887777766543311 0111122 2223221
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHH
Q 003637 705 KVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAM 749 (806)
Q Consensus 705 ~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl 749 (806)
..+++.++++++++.|...|--+....|+.+|+.+|+..+..+.
T Consensus 333 -t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 333 -TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 12367899999999999988777788999999999998876543
No 74
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=1.8e-11 Score=146.73 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=144.5
Q ss_pred hHHHHHHHhhcccccchhhhHHHHhhhhc----CCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc
Q 003637 435 NIYETLTRSLAPNIWELDDVKKGLLCQLF----GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS 510 (806)
Q Consensus 435 ~~~~~l~~si~P~I~G~e~vK~~ill~L~----g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~ 510 (806)
+.+..|.+.+.-.|+|++.+++.|.-.+. |-... .+...++||+||||||||.+|+.+++.+...
T Consensus 447 ~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~-------~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---- 515 (758)
T PRK11034 447 DTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHE-------HKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---- 515 (758)
T ss_pred HHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCC-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCC----
Confidence 34566788899999999999887774433 22111 1222379999999999999999999998443
Q ss_pred CCCcccccceeeeecC-------CCCCcc-cccccccc----ccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecc
Q 003637 511 GKGSSAVGLTAYVTKD-------PETGET-VLESGALV----LSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAG 578 (806)
Q Consensus 511 g~~~~~~glta~~~k~-------~~~ge~-~le~Gal~----lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag 578 (806)
+..++++...... ...|.. ..+.|.+. ....+|+|||||++++++.++.|+++|+++.++.. .|
T Consensus 516 ---~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g 591 (758)
T PRK11034 516 ---LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NG 591 (758)
T ss_pred ---cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CC
Confidence 2222222221100 000100 01123332 23568999999999999999999999999998743 23
Q ss_pred eeeeecCceEEEEecCCCCCC-------CCCCC------cccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHh
Q 003637 579 IIASLNARTSVLACANPSGSR-------YNPRL------SVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSL 645 (806)
Q Consensus 579 ~~~~l~~~~siIAAaNp~~g~-------~~~~~------~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~ 645 (806)
....+ .++.+|+|+|..... |.... ... .-.++|.++.|+|.++ .+...+.+.-..|+...+..
T Consensus 592 ~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~-~~~f~pefl~Rid~ii-~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 592 RKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEI-KKIFTPEFRNRLDNII-WFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred ceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHH-HHhcCHHHHccCCEEE-EcCCCCHHHHHHHHHHHHHH
Confidence 22222 347799999943110 11000 001 2357899999999763 44555666666777666542
Q ss_pred hhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 646 HFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 646 ~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
+.+. +.++.+...+++++.++|.+. .+. ....+|.|+.+|+.
T Consensus 669 -----------------~~~~--l~~~~i~l~~~~~~~~~l~~~--------~~~------~~~GAR~l~r~i~~ 710 (758)
T PRK11034 669 -----------------LQAQ--LDQKGVSLEVSQEARDWLAEK--------GYD------RAMGARPMARVIQD 710 (758)
T ss_pred -----------------HHHH--HHHCCCCceECHHHHHHHHHh--------CCC------CCCCCchHHHHHHH
Confidence 2221 233456678999999999864 111 12346888888754
No 75
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=4.8e-12 Score=128.57 Aligned_cols=212 Identities=19% Similarity=0.217 Sum_probs=128.5
Q ss_pred cccccchhhhHHHHhhhh--cCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceee
Q 003637 445 APNIWELDDVKKGLLCQL--FGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAY 522 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L--~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~ 522 (806)
.-.++||++.|+.+-+.+ +-... .-|.++.. |||++||||||||++|++++..+.-. +..+..|.+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe---~Fg~WAPk--nVLFyGppGTGKTm~Akalane~kvp-------~l~vkat~l 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPE---RFGDWAPK--NVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKATEL 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChH---HhcccCcc--eeEEECCCCccHHHHHHHHhcccCCc-------eEEechHHH
Confidence 346789999988554322 21111 11333333 99999999999999999999887433 223333322
Q ss_pred eecCCCCCcccccc-----cccc---ccCCceeeccccccCCHH------------HHHHHHHHHhhcEEEEeecceeee
Q 003637 523 VTKDPETGETVLES-----GALV---LSDRGICCIDEFDKMSES------------ARSMLHEVMEQQTVSIAKAGIIAS 582 (806)
Q Consensus 523 ~~k~~~~ge~~le~-----Gal~---lAd~GIl~IDEidkm~~~------------~~~~L~e~Me~q~isi~kag~~~~ 582 (806)
-|+++.++ .+.. .+..+|+||||+|.+.-+ .-++|+.-|+- +.
T Consensus 188 ------iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg---------i~-- 250 (368)
T COG1223 188 ------IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG---------IK-- 250 (368)
T ss_pred ------HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC---------cc--
Confidence 12332221 1122 234589999999987644 23566666652 22
Q ss_pred ecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHH
Q 003637 583 LNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLAT 662 (806)
Q Consensus 583 l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~ 662 (806)
-+-.+..|||+|. .--|.+++.|||.-- +-+..|+.++...|.+..+
T Consensus 251 eneGVvtIaaTN~-------------p~~LD~aiRsRFEeE-IEF~LP~~eEr~~ile~y~------------------- 297 (368)
T COG1223 251 ENEGVVTIAATNR-------------PELLDPAIRSRFEEE-IEFKLPNDEERLEILEYYA------------------- 297 (368)
T ss_pred cCCceEEEeecCC-------------hhhcCHHHHhhhhhe-eeeeCCChHHHHHHHHHHH-------------------
Confidence 2455778999993 334679999999543 3344566666655554433
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHH-HHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 663 LTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQI-ESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 663 Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~L-eslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
+...- .+... .+++... . -++|-|.+ +.+++.|.-.|-...++.|+.+|++.|
T Consensus 298 --------k~~Pl-pv~~~-~~~~~~~-----t-----------~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~a 351 (368)
T COG1223 298 --------KKFPL-PVDAD-LRYLAAK-----T-----------KGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKA 351 (368)
T ss_pred --------HhCCC-ccccC-HHHHHHH-----h-----------CCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 33211 22222 2333322 1 12455765 688898888888899999999999999
Q ss_pred HHH
Q 003637 742 FRL 744 (806)
Q Consensus 742 i~l 744 (806)
+.-
T Consensus 352 l~k 354 (368)
T COG1223 352 LKK 354 (368)
T ss_pred HHh
Confidence 764
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3.8e-11 Score=140.20 Aligned_cols=209 Identities=20% Similarity=0.230 Sum_probs=128.4
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc--------cc
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA--------VG 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~--------~g 518 (806)
+|+||+.+++.|.-.+-++. . .+-+||+|++|||||++++.+++.+.-.....+.+... .|
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR---L--------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR---L--------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC---C--------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence 45799999998876665541 1 12359999999999999999999874311111111000 00
Q ss_pred -ceeeeecCCC--CCcc----ccccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 519 -LTAYVTKDPE--TGET----VLESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 519 -lta~~~k~~~--~ge~----~le~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
....+.-+.. .|-. .++.- ........|++|||+|+|+...+++|+..||+- +..+.+
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~F 152 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKF 152 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEE
Confidence 0001110110 0100 01100 011234579999999999999999999999983 334667
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.++| +...|+++++|||-.+ .+..++.+.+.+++..
T Consensus 153 ILaTt-------------d~~KIp~TIrSRCq~f------------------------------~Fk~Ls~eeIv~~L~~ 189 (830)
T PRK07003 153 ILATT-------------DPQKIPVTVLSRCLQF------------------------------NLKQMPAGHIVSHLER 189 (830)
T ss_pred EEEEC-------------ChhhccchhhhheEEE------------------------------ecCCcCHHHHHHHHHH
Confidence 77777 2446778999999433 3345666666666665
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
........+++++++.|.+.. .| ++|...+++..+.++. ...|+.++|.+.+.
T Consensus 190 Il~~EgI~id~eAL~lIA~~A---------~G--------smRdALsLLdQAia~~----~~~It~~~V~~~LG 242 (830)
T PRK07003 190 ILGEERIAFEPQALRLLARAA---------QG--------SMRDALSLTDQAIAYS----ANEVTETAVSGMLG 242 (830)
T ss_pred HHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhc----cCCcCHHHHHHHhC
Confidence 544445568999999988651 12 2788888876655433 35688877776553
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.6e-11 Score=137.58 Aligned_cols=207 Identities=16% Similarity=0.191 Sum_probs=125.9
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCC-----------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG----------- 513 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~----------- 513 (806)
.-.|+|++.+++.+.-.+..+. . ...+||+||||||||++|+.+++.+.-.....+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~---l--------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS---I--------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 3357899999887776655541 1 12489999999999999999999875321111110
Q ss_pred ----cccccceeeeecCCCCCcccc----c-cc-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 514 ----SSAVGLTAYVTKDPETGETVL----E-SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 514 ----~~~~glta~~~k~~~~ge~~l----e-~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
.....+.+.. ..|--.+ + .. .-..++..+++|||++.|....+..|+..||+.
T Consensus 82 ~g~~~dv~el~aa~----~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p------------- 144 (472)
T PRK14962 82 EGTFMDVIELDAAS----NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP------------- 144 (472)
T ss_pred cCCCCccEEEeCcc----cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC-------------
Confidence 0111111110 0110000 0 00 012345679999999999999999999999972
Q ss_pred cCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 584 NARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
+..+.+|.++|. ...+++++.+||.++ ....++.+.+
T Consensus 145 ~~~vv~Ilattn-------------~~kl~~~L~SR~~vv------------------------------~f~~l~~~el 181 (472)
T PRK14962 145 PSHVVFVLATTN-------------LEKVPPTIISRCQVI------------------------------EFRNISDELI 181 (472)
T ss_pred CCcEEEEEEeCC-------------hHhhhHHHhcCcEEE------------------------------EECCccHHHH
Confidence 122445544441 124568899999543 2344555666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
..++..+.+.....+++++++.|.+.. .| ++|.+.+++..+.+.+ ...|+.+||.+++.
T Consensus 182 ~~~L~~i~~~egi~i~~eal~~Ia~~s---------~G--------dlR~aln~Le~l~~~~----~~~It~e~V~~~l~ 240 (472)
T PRK14962 182 IKRLQEVAEAEGIEIDREALSFIAKRA---------SG--------GLRDALTMLEQVWKFS----EGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh---------CC--------CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 666665544444579999999998642 11 2687777776543332 23599999988864
No 78
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.31 E-value=1.1e-11 Score=141.92 Aligned_cols=215 Identities=22% Similarity=0.193 Sum_probs=129.1
Q ss_pred cccchhhhHHHHhh--hhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVKKGLLC--QLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK~~ill--~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
.|.|++.+|+-+.- ..+....+ ..| .+..-.|||+||||||||++|++++..+....|. +.+.....
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~--~~g--l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~-------l~~~~l~~ 297 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQAS--NYG--LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR-------LDVGKLFG 297 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHH--hcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-------EEhHHhcc
Confidence 57799988876652 12211000 111 1222379999999999999999999998554432 22211111
Q ss_pred cCCCCCcccccccccc---ccCCceeeccccccCCHH------------HHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 525 KDPETGETVLESGALV---LSDRGICCIDEFDKMSES------------ARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 525 k~~~~ge~~le~Gal~---lAd~GIl~IDEidkm~~~------------~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
+.....+..++ ..+. ....+|+||||||++-.. ....++..|++. +..+.|
T Consensus 298 ~~vGese~~l~-~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~v 363 (489)
T CHL00195 298 GIVGESESRMR-QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPVFV 363 (489)
T ss_pred cccChHHHHHH-HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCceEE
Confidence 10000111111 1111 124689999999976431 123455566532 245789
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYV 667 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi 667 (806)
|||+|. .-.||+++++ |||.+ +.++.|+.+....|.+..+...
T Consensus 364 IaTTN~-------------~~~Ld~allR~GRFD~~-i~v~lP~~~eR~~Il~~~l~~~--------------------- 408 (489)
T CHL00195 364 VATANN-------------IDLLPLEILRKGRFDEI-FFLDLPSLEEREKIFKIHLQKF--------------------- 408 (489)
T ss_pred EEecCC-------------hhhCCHHHhCCCcCCeE-EEeCCcCHHHHHHHHHHHHhhc---------------------
Confidence 999993 3357788887 99977 4578899888888887776531
Q ss_pred HHHHhcCCCC-CCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 668 SYARKHIHPK-LSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 668 ~~ar~~~~p~-ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
.|. ..+...+.|.+. ..++|.++++.++..|...|... ...++.+|+..|+.-+
T Consensus 409 -------~~~~~~~~dl~~La~~----------------T~GfSGAdI~~lv~eA~~~A~~~-~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 409 -------RPKSWKKYDIKKLSKL----------------SNKFSGAEIEQSIIEAMYIAFYE-KREFTTDDILLALKQF 463 (489)
T ss_pred -------CCCcccccCHHHHHhh----------------cCCCCHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhc
Confidence 111 222223344332 12477899999999888777654 4568999999887554
No 79
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.1e-11 Score=140.96 Aligned_cols=205 Identities=19% Similarity=0.146 Sum_probs=123.9
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccce-EEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc--------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINI-LLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV-------- 517 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~inv-LLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~-------- 517 (806)
.|+||+.+++.|.-.+..+. . .|. ||+||||||||++|+.+++.+.-.....+.+....
T Consensus 17 dIIGQe~Iv~~LknaI~~~r---l---------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~ 84 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR---L---------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ 84 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC---C---------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence 56799999988775555441 1 265 89999999999999999998854211111111000
Q ss_pred ccee-eeecCCC--CCcccccc--ccc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 518 GLTA-YVTKDPE--TGETVLES--GAL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 518 glta-~~~k~~~--~ge~~le~--Gal----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
|... ...-+.. .+-..++. ..+ ......|++|||+++|+...+++|+..||+- +..+.
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vr 151 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVK 151 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeE
Confidence 0000 0000110 11000000 000 1234569999999999999999999999972 33455
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++| ++-.|+++++||+-.+ ....++.+.+++|+.
T Consensus 152 FILaTT-------------e~~kLl~TIlSRCq~f------------------------------~fkpLs~eEI~~~L~ 188 (944)
T PRK14949 152 FLLATT-------------DPQKLPVTVLSRCLQF------------------------------NLKSLTQDEIGTQLN 188 (944)
T ss_pred EEEECC-------------CchhchHHHHHhheEE------------------------------eCCCCCHHHHHHHHH
Confidence 665565 2334668899998322 456778888888887
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEE 740 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ 740 (806)
+.-......+++++++.|.++- .| ++|...+++..+.+. ....++.++|.+
T Consensus 189 ~il~~EgI~~edeAL~lIA~~S---------~G--------d~R~ALnLLdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 189 HILTQEQLPFEAEALTLLAKAA---------NG--------SMRDALSLTDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCcccHHHHHH
Confidence 7655445678999999988651 12 278777777654432 234455555443
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.30 E-value=6.6e-11 Score=129.91 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=115.9
Q ss_pred ccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCC
Q 003637 448 IWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDP 527 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~ 527 (806)
++|+++++..|--.+.++. . .|+||+||||||||++|+++++.+....|. .....+.+...+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~~---~---------~~lll~Gp~G~GKTtla~~la~~l~~~~~~----~~~~eln~sd~~~~ 78 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDGN---M---------PNLILSGPPGTGKTTSILALAHELLGPNYK----EAVLELNASDDRGI 78 (319)
T ss_pred hcCcHHHHHHHHHHHhcCC---C---------ceEEEECCCCCCHHHHHHHHHHHHhcccCc----cceeeecccccccH
Confidence 4688888776654333331 1 289999999999999999999986322110 01111111100000
Q ss_pred C-CC----ccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCC
Q 003637 528 E-TG----ETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNP 602 (806)
Q Consensus 528 ~-~g----e~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~ 602 (806)
. -. .+......+......+++|||+|.|+...|++|+..||.- +..+.++.++|..
T Consensus 79 ~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~------ 139 (319)
T PLN03025 79 DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTS------ 139 (319)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCc------
Confidence 0 00 0000000011123569999999999999999999999851 2235577777732
Q ss_pred CCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 003637 603 RLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEA 682 (806)
Q Consensus 603 ~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea 682 (806)
-.+.++|.||+..+ ....++.+.+.+++....+.....+++++
T Consensus 140 -------~~i~~~L~SRc~~i------------------------------~f~~l~~~~l~~~L~~i~~~egi~i~~~~ 182 (319)
T PLN03025 140 -------SKIIEPIQSRCAIV------------------------------RFSRLSDQEILGRLMKVVEAEKVPYVPEG 182 (319)
T ss_pred -------cccchhHHHhhhcc------------------------------cCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23457888998433 33445556666666554444456789999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH
Q 003637 683 AEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEE 740 (806)
Q Consensus 683 ~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ 740 (806)
.++|.+.. .|+ +|.+.+.++.+.. ....|+.+++.+
T Consensus 183 l~~i~~~~---------~gD--------lR~aln~Lq~~~~-----~~~~i~~~~v~~ 218 (319)
T PLN03025 183 LEAIIFTA---------DGD--------MRQALNNLQATHS-----GFGFVNQENVFK 218 (319)
T ss_pred HHHHHHHc---------CCC--------HHHHHHHHHHHHh-----cCCCCCHHHHHH
Confidence 98887652 122 6777777763221 234577666654
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.30 E-value=2.1e-11 Score=145.53 Aligned_cols=210 Identities=19% Similarity=0.224 Sum_probs=120.4
Q ss_pred cccchhhhHH--HHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVKK--GLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK~--~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
+++|++.+.. ..+..++... . -.|++|+||||||||++|+++++...... ..++......
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f-------~~lna~~~~i 90 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--R---------VGSLILYGPPGVGKTTLARIIANHTRAHF-------SSLNAVLAGV 90 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--C---------CceEEEECCCCCCHHHHHHHHHHHhcCcc-------eeehhhhhhh
Confidence 5678888763 2333333221 1 12999999999999999999998764321 1111111000
Q ss_pred cCCCCCcccccc-cccc-ccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCC
Q 003637 525 KDPETGETVLES-GALV-LSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNP 602 (806)
Q Consensus 525 k~~~~ge~~le~-Gal~-lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~ 602 (806)
++ ..+..-.. ..+. ....+++||||++.++...|.+|+..||++.+ .+|+++++..
T Consensus 91 ~d--ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I---------------iLI~aTTenp----- 148 (725)
T PRK13341 91 KD--LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI---------------TLIGATTENP----- 148 (725)
T ss_pred HH--HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE---------------EEEEecCCCh-----
Confidence 00 00000000 0011 12456999999999999999999999997654 3666654321
Q ss_pred CCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 003637 603 RLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEA 682 (806)
Q Consensus 603 ~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea 682 (806)
...++++++||+.++ .+...+.+....++++++...... +. .....+++++
T Consensus 149 ------~~~l~~aL~SR~~v~--~l~pLs~edi~~IL~~~l~~~~~~-------------------~g--~~~v~I~dea 199 (725)
T PRK13341 149 ------YFEVNKALVSRSRLF--RLKSLSDEDLHQLLKRALQDKERG-------------------YG--DRKVDLEPEA 199 (725)
T ss_pred ------HhhhhhHhhccccce--ecCCCCHHHHHHHHHHHHHHHHhh-------------------cC--CcccCCCHHH
Confidence 234568899997543 334444444455555544321000 00 1234689999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCC--CCCHhhHHHHH
Q 003637 683 AEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSE--LVEKHDVEEAF 742 (806)
Q Consensus 683 ~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~--~V~~~Dv~~ai 742 (806)
++.|.++ . +|+ +|++.++++.+...+...... .|+.+++.+++
T Consensus 200 L~~La~~--------s-~GD--------~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 200 EKHLVDV--------A-NGD--------ARSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHh--------C-CCC--------HHHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 9999865 2 444 899999998876443322111 25666666554
No 82
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.28 E-value=2.4e-11 Score=136.22 Aligned_cols=192 Identities=20% Similarity=0.300 Sum_probs=117.3
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccc---cCCceeeccccccCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVL---SDRGICCIDEFDKMS 556 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~l---Ad~GIl~IDEidkm~ 556 (806)
-++||+||||||||++++++++.+....+. +.......+....++..++ ..+.. ...+|+||||+|.+.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~-------i~~s~l~~k~~ge~~~~lr-~lf~~A~~~~P~ILfIDEID~i~ 251 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIR-------VVGSEFVQKYLGEGPRMVR-DVFRLARENAPSIIFIDEVDSIA 251 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEE-------EehHHHHHHhcchhHHHHH-HHHHHHHhcCCeEEEEECHhhhc
Confidence 389999999999999999999987544322 1111111110001111111 01111 245799999999863
Q ss_pred -----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhh
Q 003637 557 -----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLI 623 (806)
Q Consensus 557 -----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli 623 (806)
...+..+.+.+.+-. +.. -..++.+|+|+|.. -.|++++++ |||..
T Consensus 252 ~~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN~~-------------d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 252 TKRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATNRA-------------DTLDPALLRPGRLDRK 310 (398)
T ss_pred cccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecCCc-------------hhCCHHHcCCCcccEE
Confidence 233445555554310 110 12357799999932 356688877 99877
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~ 703 (806)
+.+..|+.+....|.+.++... .+.+.+. .+.|...
T Consensus 311 -I~~~~P~~~~R~~Il~~~~~~~--------------------------~l~~dvd---~~~la~~-------------- 346 (398)
T PTZ00454 311 -IEFPLPDRRQKRLIFQTITSKM--------------------------NLSEEVD---LEDFVSR-------------- 346 (398)
T ss_pred -EEeCCcCHHHHHHHHHHHHhcC--------------------------CCCcccC---HHHHHHH--------------
Confidence 4668888888777776554321 0111111 1222211
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 003637 704 KKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 704 ~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 746 (806)
..++|.++++++++.|...|..+.+..|+.+|+.+|++.+.
T Consensus 347 --t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 347 --PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVV 387 (398)
T ss_pred --cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 12467899999999999988888888999999999987753
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.4e-10 Score=134.25 Aligned_cols=204 Identities=18% Similarity=0.179 Sum_probs=128.9
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc------------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS------------ 514 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~------------ 514 (806)
.|+|++.+++.|.-.+..+. . .+.+||+||||||||++|+.+++.+.-..-..+.+.
T Consensus 16 dVIGQe~vv~~L~~aI~~gr---l--------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR---L--------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG 84 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC
Confidence 56899999998886666541 1 135699999999999999999998742100001100
Q ss_pred ---ccccceeeeecCCCCCccc----ccccc--ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 515 ---SAVGLTAYVTKDPETGETV----LESGA--LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 515 ---~~~glta~~~k~~~~ge~~----le~Ga--l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
....+.+.. ..+-.. ++... -..+...|++|||+++|+...+++|+..||+- +.
T Consensus 85 ~hpDviEIDAAs----~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~ 147 (702)
T PRK14960 85 RFIDLIEIDAAS----RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PE 147 (702)
T ss_pred CCCceEEecccc----cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CC
Confidence 000011100 001000 11000 01234469999999999999999999999972 22
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.++| +...+++++++|+..+ ....++.+.+.+
T Consensus 148 ~v~FILaTt-------------d~~kIp~TIlSRCq~f------------------------------eFkpLs~eEI~k 184 (702)
T PRK14960 148 HVKFLFATT-------------DPQKLPITVISRCLQF------------------------------TLRPLAVDEITK 184 (702)
T ss_pred CcEEEEEEC-------------ChHhhhHHHHHhhhee------------------------------eccCCCHHHHHH
Confidence 344565555 1334567888998433 345667777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
++...-......+++++++.|.+.. .| ++|.+.+++..+.+. ....|+.++|.+.+
T Consensus 185 ~L~~Il~kEgI~id~eAL~~IA~~S---------~G--------dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 185 HLGAILEKEQIAADQDAIWQIAESA---------QG--------SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 7766555455679999999998651 12 378888887654432 36779999998764
No 84
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.28 E-value=2.4e-11 Score=147.94 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=117.0
Q ss_pred HHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCC-Cc-cc
Q 003637 439 TLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK-GS-SA 516 (806)
Q Consensus 439 ~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~-~~-~~ 516 (806)
.+...+...++|++.+|+.|+-.+....... ..++ .++||+||||||||++|+++++.+.+..+.-.. +. ..
T Consensus 313 ~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-----~~~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~ 386 (775)
T TIGR00763 313 RAKEILDEDHYGLKKVKERILEYLAVQKLRG-----KMKG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDE 386 (775)
T ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-----CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccH
Confidence 4455677789999999998874332111000 0112 279999999999999999999998665432111 00 00
Q ss_pred ccceeeeecCCCCCcccccccc----ccc--cCCceeeccccccCCHHHH----HHHHHHHhh---cEEEEeecceeeee
Q 003637 517 VGLTAYVTKDPETGETVLESGA----LVL--SDRGICCIDEFDKMSESAR----SMLHEVMEQ---QTVSIAKAGIIASL 583 (806)
Q Consensus 517 ~glta~~~k~~~~ge~~le~Ga----l~l--Ad~GIl~IDEidkm~~~~~----~~L~e~Me~---q~isi~kag~~~~l 583 (806)
..+... +....|. .+|. +.. ..+.+++|||||++....+ ++|+++|+. +.+.-...+....+
T Consensus 387 ~~i~g~--~~~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 387 AEIRGH--RRTYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred HHHcCC--CCceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc
Confidence 000000 0000000 0111 222 2446999999999976543 789999974 22211111111122
Q ss_pred cCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 584 NARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
.++.+|+|+|.. -.||++|++||+++ .+..++.+....|++..+...
T Consensus 462 -s~v~~I~TtN~~-------------~~i~~~L~~R~~vi--~~~~~~~~e~~~I~~~~l~~~----------------- 508 (775)
T TIGR00763 462 -SKVIFIATANSI-------------DTIPRPLLDRMEVI--ELSGYTEEEKLEIAKKYLIPK----------------- 508 (775)
T ss_pred -CCEEEEEecCCc-------------hhCCHHHhCCeeEE--ecCCCCHHHHHHHHHHHHHHH-----------------
Confidence 357889999952 25789999999754 556666666667765444210
Q ss_pred HHHHHHHHhcC---CCCCCHHHHHHHHHHH
Q 003637 664 TAYVSYARKHI---HPKLSDEAAEELTRGY 690 (806)
Q Consensus 664 k~yi~~ar~~~---~p~ls~ea~~~L~~~y 690 (806)
.+. ...+ ...+++++++.|.+.|
T Consensus 509 --~~~--~~~l~~~~~~~~~~~l~~i~~~~ 534 (775)
T TIGR00763 509 --ALE--DHGLKPDELKITDEALLLLIKYY 534 (775)
T ss_pred --HHH--HcCCCcceEEECHHHHHHHHHhc
Confidence 000 0011 2358999999999876
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.27 E-value=3.5e-11 Score=136.64 Aligned_cols=180 Identities=23% Similarity=0.325 Sum_probs=106.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccc-ccccccCCceeeccccccCCHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLES-GALVLSDRGICCIDEFDKMSESA 559 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~-Gal~lAd~GIl~IDEidkm~~~~ 559 (806)
|++|+||||||||++|+.+++......+. ++.......+ ..+..-.. .......+.++||||+++++...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~-------l~a~~~~~~~--ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~ 108 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEA-------LSAVTSGVKD--LREVIEEARQRRSAGRRTILFIDEIHRFNKAQ 108 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE-------EecccccHHH--HHHHHHHHHHhhhcCCceEEEEechhhhCHHH
Confidence 89999999999999999999987543221 1111000000 00000000 00112256799999999999999
Q ss_pred HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHH
Q 003637 560 RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLA 639 (806)
Q Consensus 560 ~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la 639 (806)
|..|+..||++.+ .+|++++... ...+++++++||.++ .+..++.+.-..++
T Consensus 109 q~~LL~~le~~~i---------------ilI~att~n~-----------~~~l~~aL~SR~~~~--~~~~ls~e~i~~lL 160 (413)
T PRK13342 109 QDALLPHVEDGTI---------------TLIGATTENP-----------SFEVNPALLSRAQVF--ELKPLSEEDIEQLL 160 (413)
T ss_pred HHHHHHHhhcCcE---------------EEEEeCCCCh-----------hhhccHHHhccceee--EeCCCCHHHHHHHH
Confidence 9999999997654 3555543211 234668999999433 23344443333444
Q ss_pred HHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHH
Q 003637 640 KHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIR 719 (806)
Q Consensus 640 ~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslir 719 (806)
++++... ...+ ..+++++.+.|.++ . .|+ +|++.++++
T Consensus 161 ~~~l~~~------------------------~~~~-i~i~~~al~~l~~~--------s-~Gd--------~R~aln~Le 198 (413)
T PRK13342 161 KRALEDK------------------------ERGL-VELDDEALDALARL--------A-NGD--------ARRALNLLE 198 (413)
T ss_pred HHHHHHh------------------------hcCC-CCCCHHHHHHHHHh--------C-CCC--------HHHHHHHHH
Confidence 4333210 0001 25788888887754 1 233 788888877
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 720 LSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 720 la~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
.+... ...|+.+++.+++..
T Consensus 199 ~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 199 LAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHc-----cCCCCHHHHHHHHhh
Confidence 75443 556888888877654
No 86
>CHL00176 ftsH cell division protein; Validated
Probab=99.26 E-value=4.3e-11 Score=141.22 Aligned_cols=222 Identities=19% Similarity=0.252 Sum_probs=124.7
Q ss_pred cccchhhhHHHHhh--hhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVKKGLLC--QLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK~~ill--~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
.|.|.+.+|+.+.- ..+.........| .+...++||+||||||||++|++++..+...++ .+.+.....
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g--~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i-------~is~s~f~~ 254 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF-------SISGSEFVE 254 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhCCCee-------eccHHHHHH
Confidence 46688887776542 1221111111111 223347999999999999999999998744332 222211100
Q ss_pred cCCCCCcccccccccccc---CCceeeccccccCC-----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEE
Q 003637 525 KDPETGETVLESGALVLS---DRGICCIDEFDKMS-----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVL 590 (806)
Q Consensus 525 k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~-----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siI 590 (806)
.....+...++ ..+..| ...|+||||+|.+. ...+..|.+.+.+-. |. .-+.++.||
T Consensus 255 ~~~g~~~~~vr-~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d------g~--~~~~~ViVI 325 (638)
T CHL00176 255 MFVGVGAARVR-DLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD------GF--KGNKGVIVI 325 (638)
T ss_pred HhhhhhHHHHH-HHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc------cc--cCCCCeeEE
Confidence 00000000000 112222 34689999999874 223344544443210 11 113467899
Q ss_pred EecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 591 ACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 591 AAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
||+|... .+++++++ |||.. +.++.|+.+....|.+..+..
T Consensus 326 aaTN~~~-------------~LD~ALlRpGRFd~~-I~v~lPd~~~R~~IL~~~l~~----------------------- 368 (638)
T CHL00176 326 AATNRVD-------------ILDAALLRPGRFDRQ-ITVSLPDREGRLDILKVHARN----------------------- 368 (638)
T ss_pred EecCchH-------------hhhhhhhccccCceE-EEECCCCHHHHHHHHHHHHhh-----------------------
Confidence 9999432 34467765 89876 566888888887777665541
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
.+..++...+.|.+ .++ +.+.++|+++++.|...|..+....|+.+|+.+|+.-+
T Consensus 369 ------~~~~~d~~l~~lA~---------~t~-------G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 369 ------KKLSPDVSLELIAR---------RTP-------GFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred ------cccchhHHHHHHHh---------cCC-------CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 01122223333332 222 35678899998887777766667788999998887654
No 87
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.25 E-value=3.7e-11 Score=145.56 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=138.0
Q ss_pred hcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCcccccce
Q 003637 444 LAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSAVGLT 520 (806)
Q Consensus 444 i~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~~glt 520 (806)
-...++|++.....++-.|.... ..|+||+||||||||++++.+++.+...- ...+.......++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 33457799987776665554431 12899999999999999999999862210 0012222223333
Q ss_pred eeeecCCCCCcccccccc-cc---ccCCceeeccccccCC---------HHHHHHHHHHHhhcEEEEeecceeeeecCce
Q 003637 521 AYVTKDPETGETVLESGA-LV---LSDRGICCIDEFDKMS---------ESARSMLHEVMEQQTVSIAKAGIIASLNART 587 (806)
Q Consensus 521 a~~~k~~~~ge~~le~Ga-l~---lAd~GIl~IDEidkm~---------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~ 587 (806)
..+......|+|.-.-.. +. ...+.|+||||++.+. .+.++.|...|+.+.+
T Consensus 248 ~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i--------------- 312 (731)
T TIGR02639 248 SLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL--------------- 312 (731)
T ss_pred HHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe---------------
Confidence 322111223444322111 11 1235799999999874 2346677788876654
Q ss_pred EEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHH
Q 003637 588 SVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYV 667 (806)
Q Consensus 588 siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi 667 (806)
.+|+|+|+.+.+ ..+.+.++|.+||.. +.+..|+.+....|.+.+...+.. .....++.+.+...+
T Consensus 313 ~~IgaTt~~e~~--------~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~e~----~~~v~i~~~al~~~~ 378 (731)
T TIGR02639 313 RCIGSTTYEEYK--------NHFEKDRALSRRFQK--IDVGEPSIEETVKILKGLKEKYEE----FHHVKYSDEALEAAV 378 (731)
T ss_pred EEEEecCHHHHH--------HHhhhhHHHHHhCce--EEeCCCCHHHHHHHHHHHHHHHHh----ccCcccCHHHHHHHH
Confidence 489999975422 245677999999974 577888988888888877765322 233568999999999
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHHH
Q 003637 668 SYARKHIHP-KLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 668 ~~ar~~~~p-~ls~ea~~~L~~~y~~lR 694 (806)
.++.+++.. .+++.|+++|.+.....|
T Consensus 379 ~ls~ryi~~r~~P~kai~lld~a~a~~~ 406 (731)
T TIGR02639 379 ELSARYINDRFLPDKAIDVIDEAGASFR 406 (731)
T ss_pred HhhhcccccccCCHHHHHHHHHhhhhhh
Confidence 999887765 679999999987765444
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.3e-10 Score=132.36 Aligned_cols=210 Identities=19% Similarity=0.142 Sum_probs=129.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc-cce-----
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV-GLT----- 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~-glt----- 520 (806)
+|+|++.+++.|.-.+..+. . .+.+||+||||||||++|+.+++.+.-.....+.+.... .|.
T Consensus 17 divGq~~v~~~L~~~~~~~~---l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY---L--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC---C--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence 56899999998887665541 1 123699999999999999999998742110001110000 000
Q ss_pred ---eeeecCCC--CCcccc----ccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 521 ---AYVTKDPE--TGETVL----ESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 521 ---a~~~k~~~--~ge~~l----e~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
....-++. .+-..+ +.- .-..+...|++|||+|+|+.+.+++|+..||+- +..+.+
T Consensus 86 ~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~f 152 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKF 152 (509)
T ss_pred CCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEE
Confidence 00000110 111000 000 011223469999999999999999999999972 334556
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.++| +.-.++++++||+..+ ....++.+.+.+++..
T Consensus 153 Ilatt-------------d~~kl~~tI~SRc~~~------------------------------~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 153 ILATT-------------DHHKLPVTVLSRCLQF------------------------------HLAQLPPLQIAAHCQH 189 (509)
T ss_pred EEEEC-------------ChHhchHHHHHHhhhh------------------------------hcCCCCHHHHHHHHHH
Confidence 66655 2344667799998433 2345566666666655
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
.-+.....+++++++.|.+.. .| ++|.+.+++.-+.+. ....|+.+||.+.+..
T Consensus 190 il~~egi~~~~~al~~ia~~s---------~G--------slR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA---------NG--------SVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc---------CC--------cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 544445668999999888652 12 378888888655443 3577999999887543
No 89
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=8.5e-11 Score=144.46 Aligned_cols=244 Identities=17% Similarity=0.230 Sum_probs=149.0
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS 515 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~ 515 (806)
.+..+.+.+...|+|++.+.+.+.-.+..... .+ ....+....+||+||||||||.+|+++|+.+.++ +..+.
T Consensus 555 ~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~-gl--~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i 627 (852)
T TIGR03346 555 KLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA-GL--SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMV 627 (852)
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhc-cC--CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEE
Confidence 34556677888899999998888755442200 00 0011223479999999999999999999987543 33344
Q ss_pred cccceeeeecCCC-------CCcc-ccccccc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 516 AVGLTAYVTKDPE-------TGET-VLESGAL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 516 ~~glta~~~k~~~-------~ge~-~le~Gal----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
.++++.+...... .|-. .-+.|.+ ......|++||||++++++.++.|+++|++|.++-. .|....+
T Consensus 628 ~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~ 706 (852)
T TIGR03346 628 RIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF 706 (852)
T ss_pred EEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEec
Confidence 4444332211100 0000 0012222 222346999999999999999999999999998733 2433333
Q ss_pred cCceEEEEecCCCCCCCCC-----C-Cc----cc--ccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCC
Q 003637 584 NARTSVLACANPSGSRYNP-----R-LS----VI--ENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPE 651 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~-----~-~~----~~--~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~ 651 (806)
.++.||+|+|-....+.. . .. +. -.-.+.|.|+.|+|-++ .+...+.+.-..|+...+..
T Consensus 707 -rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~Ii-vF~PL~~e~l~~I~~l~L~~------ 778 (852)
T TIGR03346 707 -RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIV-VFHPLGREQIARIVEIQLGR------ 778 (852)
T ss_pred -CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEE-ecCCcCHHHHHHHHHHHHHH------
Confidence 248899999974321110 0 00 00 02247788999998764 44556666666777666542
Q ss_pred CccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHH
Q 003637 652 NSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSE 722 (806)
Q Consensus 652 ~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~ 722 (806)
+.+.+ ..+.+...+++++.++|.++ .|.. +..+|.|+++++...
T Consensus 779 -----------l~~~l--~~~~~~l~i~~~a~~~L~~~--------~~~~------~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 779 -----------LRKRL--AERKITLELSDAALDFLAEA--------GYDP------VYGARPLKRAIQREI 822 (852)
T ss_pred -----------HHHHH--HHCCCeecCCHHHHHHHHHh--------CCCC------CCCchhHHHHHHHHH
Confidence 22221 22234567999999999876 5521 123799999987644
No 90
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.2e-11 Score=138.25 Aligned_cols=223 Identities=21% Similarity=0.211 Sum_probs=133.1
Q ss_pred ccchhhhHHHHh-hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecC
Q 003637 448 IWELDDVKKGLL-CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKD 526 (806)
Q Consensus 448 I~G~e~vK~~il-l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~ 526 (806)
|-|+|++|+.+- ..++.......-.+..+...-.|||+||||||||++|++++..+ +.++.++.......+.
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-------~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-------GMNFLSVKGPELFSKY 508 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-------cCCeeeccCHHHHHHh
Confidence 558999998776 22222211111011112223379999999999999999999988 4444444333332222
Q ss_pred CCCCcccccc---ccccccCCceeeccccccCCHHH-----------HHHHHHHHhhcEEEEeecceeeeecCceEEEEe
Q 003637 527 PETGETVLES---GALVLSDRGICCIDEFDKMSESA-----------RSMLHEVMEQQTVSIAKAGIIASLNARTSVLAC 592 (806)
Q Consensus 527 ~~~ge~~le~---Gal~lAd~GIl~IDEidkm~~~~-----------~~~L~e~Me~q~isi~kag~~~~l~~~~siIAA 592 (806)
-..+|..+.. -+-..| ..|+|+||||.+.... .+.|+.-|+- +.. ..++.||||
T Consensus 509 vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG---------~e~--~k~V~ViAA 576 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG---------LEA--LKNVLVIAA 576 (693)
T ss_pred cCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc---------ccc--cCcEEEEec
Confidence 2122222211 111222 3899999999775432 3555555542 221 145889999
Q ss_pred cCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHH
Q 003637 593 ANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYA 670 (806)
Q Consensus 593 aNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~a 670 (806)
+|.. -.|.++|++ |||-+ +....|+.+...+|.+.-++. .
T Consensus 577 TNRp-------------d~ID~ALlRPGRlD~i-iyVplPD~~aR~~Ilk~~~kk----m-------------------- 618 (693)
T KOG0730|consen 577 TNRP-------------DMIDPALLRPGRLDRI-IYVPLPDLEARLEILKQCAKK----M-------------------- 618 (693)
T ss_pred cCCh-------------hhcCHHHcCCccccee-EeecCccHHHHHHHHHHHHhc----C--------------------
Confidence 9943 356799999 99987 566888887777765544331 1
Q ss_pred HhcCCCCCCHH-HHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHh--cCCCCCHhhHHHHHHHHHH
Q 003637 671 RKHIHPKLSDE-AAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIR--LSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 671 r~~~~p~ls~e-a~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~--~~~~V~~~Dv~~ai~l~~~ 747 (806)
.++++ .++.|.+.- -++|-++|..+++.|...|-.+ ....|+.+|+.+|+.-...
T Consensus 619 ------p~~~~vdl~~La~~T----------------~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 619 ------PFSEDVDLEELAQAT----------------EGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred ------CCCccccHHHHHHHh----------------ccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 12322 233343321 2356799999999988877533 2556888899888866655
Q ss_pred HH
Q 003637 748 AM 749 (806)
Q Consensus 748 sl 749 (806)
++
T Consensus 677 s~ 678 (693)
T KOG0730|consen 677 SL 678 (693)
T ss_pred cC
Confidence 43
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.23 E-value=6.4e-10 Score=116.30 Aligned_cols=172 Identities=18% Similarity=0.200 Sum_probs=110.1
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC-CeeccCC----Cccccccee
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR-GIYTSGK----GSSAVGLTA 521 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr-~~~t~g~----~~~~~glta 521 (806)
++.|++.++.++.-.+.++ ..+ |+||+||||||||..++++++.+.- ..+-++. .+...|...
T Consensus 37 e~~gQe~vV~~L~~a~~~~---~lp---------~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv 104 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR---ILP---------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV 104 (346)
T ss_pred hhcchHHHHHHHHHHHhhc---CCc---------eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence 3469999999988777763 222 9999999999999999999988743 2222221 223333332
Q ss_pred eeecCCCCCccc-ccc-----ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 522 YVTKDPETGETV-LES-----GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 522 ~~~k~~~~ge~~-le~-----Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
. +.... .+. +.. -.-+...-.|++|||.|.|..+.|++|...||.- .-.++++.-||
T Consensus 105 v--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-------------s~~trFiLIcn- 167 (346)
T KOG0989|consen 105 V--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-------------SRTTRFILICN- 167 (346)
T ss_pred h--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-------------ccceEEEEEcC-
Confidence 1 11100 010 000 0011122369999999999999999999999972 12244555566
Q ss_pred CCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCC
Q 003637 596 SGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIH 675 (806)
Q Consensus 596 ~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~ 675 (806)
.--.||.++.||+--+ .++.++.+.+...+++......
T Consensus 168 ------------ylsrii~pi~SRC~Kf------------------------------rFk~L~d~~iv~rL~~Ia~~E~ 205 (346)
T KOG0989|consen 168 ------------YLSRIIRPLVSRCQKF------------------------------RFKKLKDEDIVDRLEKIASKEG 205 (346)
T ss_pred ------------ChhhCChHHHhhHHHh------------------------------cCCCcchHHHHHHHHHHHHHhC
Confidence 2346889999998433 3445555555555566555566
Q ss_pred CCCCHHHHHHHHHH
Q 003637 676 PKLSDEAAEELTRG 689 (806)
Q Consensus 676 p~ls~ea~~~L~~~ 689 (806)
..+++++.++|...
T Consensus 206 v~~d~~al~~I~~~ 219 (346)
T KOG0989|consen 206 VDIDDDALKLIAKI 219 (346)
T ss_pred CCCCHHHHHHHHHH
Confidence 77999999998864
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.4e-10 Score=132.04 Aligned_cols=208 Identities=17% Similarity=0.179 Sum_probs=120.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee--ccCCCccccc-c---e
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY--TSGKGSSAVG-L---T 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~--t~g~~~~~~g-l---t 520 (806)
+|+||+.+++.|.-.+..+. .. +-+||+|++|||||++++.+++.+.-..- ..+......| | .
T Consensus 17 dVIGQe~vv~~L~~al~~gR---Lp--------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR---LH--------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC---Cc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 56899999998886666541 11 23599999999999999999998742100 0000000000 0 0
Q ss_pred --------eeeecCCC--CCcc----ccccccc--cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 521 --------AYVTKDPE--TGET----VLESGAL--VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 521 --------a~~~k~~~--~ge~----~le~Gal--~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
....-+.. .|-- .++.-.. ......|++|||+|+|+...+++|+..||+- +
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-------------P 152 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------P 152 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-------------C
Confidence 00000110 0000 0000000 1223469999999999999999999999972 3
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
..+.+|.++| +.-.|++.++|||-.+ ....++.+.+.
T Consensus 153 ~~v~FILaTt-------------ep~kLlpTIrSRCq~f------------------------------~f~~ls~eei~ 189 (700)
T PRK12323 153 EHVKFILATT-------------DPQKIPVTVLSRCLQF------------------------------NLKQMPPGHIV 189 (700)
T ss_pred CCceEEEEeC-------------ChHhhhhHHHHHHHhc------------------------------ccCCCChHHHH
Confidence 3456666666 2456779999998333 23445555555
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+++...-......+++++++.|.+.- .| ++|...+++..+.+. ....|+.++|.+.+
T Consensus 190 ~~L~~Il~~Egi~~d~eAL~~IA~~A---------~G--------s~RdALsLLdQaia~----~~~~It~~~V~~~L 246 (700)
T PRK12323 190 SHLDAILGEEGIAHEVNALRLLAQAA---------QG--------SMRDALSLTDQAIAY----SAGNVSEEAVRGML 246 (700)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----ccCCcCHHHHHHHh
Confidence 55554433334457888888876541 12 267777776544332 23457777666544
No 93
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.9e-11 Score=130.68 Aligned_cols=165 Identities=22% Similarity=0.235 Sum_probs=98.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCC--CCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLP--SGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~--~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
.|.|+.++|+-|--+.+=- ...+ -....|.+-.|||+||||||||+||++++....- .|..+.-+..+.
T Consensus 213 DIagl~~AK~lL~EAVvlP--i~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVSsstltS 283 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLP--IWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVSSSTLTS 283 (491)
T ss_pred hhcchHHHHHHHHHHHhhh--hhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEechhhhhh
Confidence 3568888776443111100 0001 0112455668999999999999999999998732 222222222222
Q ss_pred cCCCCCcccccccccccc---CCceeeccccccCCHH------------HHHHHHHHHhhcEEEEeecceeeee--cCce
Q 003637 525 KDPETGETVLESGALVLS---DRGICCIDEFDKMSES------------ARSMLHEVMEQQTVSIAKAGIIASL--NART 587 (806)
Q Consensus 525 k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~~~------------~~~~L~e~Me~q~isi~kag~~~~l--~~~~ 587 (806)
|.-...|..++ -.|.+| ...++||||||.+-.. ..+-|+--|+ |...++ ...+
T Consensus 284 KwRGeSEKlvR-lLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~V 353 (491)
T KOG0738|consen 284 KWRGESEKLVR-LLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVV 353 (491)
T ss_pred hhccchHHHHH-HHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeE
Confidence 22111111111 123333 3479999999987432 2345555554 222222 3358
Q ss_pred EEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 588 SVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 588 siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
.||||+| -..+|.++|++||.-- ++.-.|+.+....|.+..+.
T Consensus 354 mVLAATN-------------~PWdiDEAlrRRlEKR-IyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 354 MVLAATN-------------FPWDIDEALRRRLEKR-IYIPLPDAEARSALIKILLR 396 (491)
T ss_pred EEEeccC-------------CCcchHHHHHHHHhhh-eeeeCCCHHHHHHHHHHhhc
Confidence 9999999 3677889999999755 56678888888888887765
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.23 E-value=4.5e-11 Score=133.58 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=114.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccccc---CCceeeccccccCC-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS---DRGICCIDEFDKMS- 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~- 556 (806)
++||+||||||||++++++++.+....+... ...+. .+....+...+. ..+..+ ..+|+||||+|.+.
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~----~~~l~---~~~~g~~~~~i~-~~f~~a~~~~p~il~iDEiD~l~~ 229 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVV----GSELV---RKYIGEGARLVR-EIFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecc----hHHHH---HHhhhHHHHHHH-HHHHHHHhcCCcEEEhhhhhhhcc
Confidence 6999999999999999999998865432211 00010 000000111111 112222 34799999999873
Q ss_pred ----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhh
Q 003637 557 ----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIY 624 (806)
Q Consensus 557 ----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~ 624 (806)
...+..+.+.+.+-. +. .-..++.||+|+|... .+++++++ |||-.
T Consensus 230 ~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~~- 287 (364)
T TIGR01242 230 KRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDRI- 287 (364)
T ss_pred ccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecCChh-------------hCChhhcCcccCceE-
Confidence 334556666664311 10 1123578999999432 35577765 88875
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSK 704 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~ 704 (806)
+.+..|+.+....|++..+... ...+.++ .+.|.+.
T Consensus 288 i~v~~P~~~~r~~Il~~~~~~~--------------------------~l~~~~~---~~~la~~--------------- 323 (364)
T TIGR01242 288 IEVPLPDFEGRLEILKIHTRKM--------------------------KLAEDVD---LEAIAKM--------------- 323 (364)
T ss_pred EEeCCcCHHHHHHHHHHHHhcC--------------------------CCCccCC---HHHHHHH---------------
Confidence 5667888777777765443210 0111122 2223222
Q ss_pred cccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 705 KVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 705 ~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
..+++.+++.++++.|...|..+.+..|+.+|+.+|+..
T Consensus 324 -t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 324 -TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 013568999999999999998888899999999999865
No 95
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.22 E-value=2.7e-10 Score=120.83 Aligned_cols=147 Identities=23% Similarity=0.225 Sum_probs=110.5
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
.|++||||.+.|+-+.-+.|+.+||.-- ...+|.|+|.--.+-+..- ......+|..|++|. ||
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTD-IESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccC-CcCCCCCCHhhhhhe-eE
Confidence 3899999999999999999999999732 2457788887544433222 223678999999997 33
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~ 703 (806)
....+++.+.++.+|..-.+.....++++|+++|.+.-
T Consensus 356 -----------------------------I~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig------------- 393 (450)
T COG1224 356 -----------------------------ISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIG------------- 393 (450)
T ss_pred -----------------------------EecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhc-------------
Confidence 12345666677777765444445679999999998761
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHHHh
Q 003637 704 KKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQ 751 (806)
Q Consensus 704 ~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl~~ 751 (806)
..-|+|....|+.-|.-.|+.+.+..|..+||++|..+|-..-..
T Consensus 394 ---~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~krS 438 (450)
T COG1224 394 ---EETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVKRS 438 (450)
T ss_pred ---hhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHHHH
Confidence 123589999999999999999999999999999999998655443
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=4.4e-10 Score=125.50 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=125.1
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc--------cc
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA--------VG 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~--------~g 518 (806)
+|+||+.+++.+.-.+..+. .+ +.+||+||||+|||++|+.+++.+.-..-..+.+... .|
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~---~~--------h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR---IH--------HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKG 85 (363)
T ss_pred hccChHHHHHHHHHHHHcCC---CC--------eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 56799999998876665441 11 2369999999999999999999874210000111000 00
Q ss_pred --ceeeeecCCC--CCcccc----cc-cc-ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 519 --LTAYVTKDPE--TGETVL----ES-GA-LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 519 --lta~~~k~~~--~ge~~l----e~-Ga-l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
...... ++. .+-..+ +. .. -..++..+++|||+++|+...+++|+..||+- +..+.
T Consensus 86 ~~~d~~~~-~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~ 151 (363)
T PRK14961 86 LCLDLIEI-DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIK 151 (363)
T ss_pred CCCceEEe-cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeE
Confidence 000000 110 000000 00 00 01234569999999999999999999999972 22344
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++|- .-.+++++.+|+-.+ ...+++.+.+.+|+.
T Consensus 152 fIl~t~~-------------~~~l~~tI~SRc~~~------------------------------~~~~l~~~el~~~L~ 188 (363)
T PRK14961 152 FILATTD-------------VEKIPKTILSRCLQF------------------------------KLKIISEEKIFNFLK 188 (363)
T ss_pred EEEEcCC-------------hHhhhHHHHhhceEE------------------------------eCCCCCHHHHHHHHH
Confidence 5555541 223667888998322 345566677777766
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
..-+.....+++++.++|.+.. .| ++|.+.+++..+.+. ....|+.++|.+++.
T Consensus 189 ~~~~~~g~~i~~~al~~ia~~s---------~G--------~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 189 YILIKESIDTDEYALKLIAYHA---------HG--------SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 5444344568999999888651 12 278877777654433 367799999888764
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6e-10 Score=130.24 Aligned_cols=211 Identities=21% Similarity=0.218 Sum_probs=129.5
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc--------c
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV--------G 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~--------g 518 (806)
.|+|++.+++.|.-.+..+. -.+.+||+|++|+|||++|+.+++.+.-.....+.+.... |
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-----------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-----------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 46799999998876666541 1135799999999999999999998642111111110000 0
Q ss_pred -ceeeeecCC--CCCcc----ccccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 519 -LTAYVTKDP--ETGET----VLESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 519 -lta~~~k~~--~~ge~----~le~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
......-+. ..+.- .++.. .-..+...|++|||+++|+...+++|+..||+. +..+.+
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~f 152 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKF 152 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEE
Confidence 000000000 01100 01100 002245579999999999999999999999972 234556
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.++| +.-.+++.++||+-.+ ....++.+.+.+++..
T Consensus 153 ILaTt-------------d~~kL~~TIrSRC~~f------------------------------~f~~Ls~eeI~~~L~~ 189 (709)
T PRK08691 153 ILATT-------------DPHKVPVTVLSRCLQF------------------------------VLRNMTAQQVADHLAH 189 (709)
T ss_pred EEEeC-------------CccccchHHHHHHhhh------------------------------hcCCCCHHHHHHHHHH
Confidence 66665 2334667788998222 2344566666666665
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
.-......+++++++.|.+.. .| ++|.+.+++..+.+. ....|+.++|...+...
T Consensus 190 Il~kEgi~id~eAL~~Ia~~A---------~G--------slRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 190 VLDSEKIAYEPPALQLLGRAA---------AG--------SMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHcCCCcCHHHHHHHHHHh---------CC--------CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 555455678999999998752 12 379888888665554 24678888888876443
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3.7e-10 Score=130.67 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=128.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS----------- 515 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~----------- 515 (806)
.|+||+.+++.+.-.+-.+. ..+.+||+||||+|||++|+.+++.+.-.....+.+..
T Consensus 17 diiGq~~~v~~L~~~i~~~r-----------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-----------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 46799999988776665441 11247899999999999999999976421100011100
Q ss_pred -cccceeeeecCCCCCc----ccccc-c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 516 -AVGLTAYVTKDPETGE----TVLES-G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 516 -~~glta~~~k~~~~ge----~~le~-G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
...+-..... ...|- ..++. . .-..++..|++|||+++|+...+++|+..||+. +..+.
T Consensus 86 ~~~dlieidaa-s~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~ 151 (546)
T PRK14957 86 SFIDLIEIDAA-SRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVK 151 (546)
T ss_pred CCCceEEeecc-cccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCce
Confidence 0000000000 00010 00100 0 112345679999999999999999999999973 23344
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.+++ +...++++++||+..+ ....++.+.+.+++.
T Consensus 152 fIL~Tt-------------d~~kil~tI~SRc~~~------------------------------~f~~Ls~~eI~~~L~ 188 (546)
T PRK14957 152 FILATT-------------DYHKIPVTILSRCIQL------------------------------HLKHISQADIKDQLK 188 (546)
T ss_pred EEEEEC-------------ChhhhhhhHHHheeeE------------------------------EeCCCCHHHHHHHHH
Confidence 555554 1234556788998444 445667777777776
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
..-+.....++++++++|.+.. .| ++|.+.+++..+.+.. .+.|+.++|.+++.
T Consensus 189 ~il~~egi~~e~~Al~~Ia~~s---------~G--------dlR~alnlLek~i~~~----~~~It~~~V~~~l~ 242 (546)
T PRK14957 189 IILAKENINSDEQSLEYIAYHA---------KG--------SLRDALSLLDQAISFC----GGELKQAQIKQMLG 242 (546)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhc----cCCCCHHHHHHHHc
Confidence 6544455678999999998652 12 3788888887655442 26799988887643
No 99
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.20 E-value=1.1e-10 Score=141.43 Aligned_cols=239 Identities=18% Similarity=0.280 Sum_probs=143.4
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS 515 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~ 515 (806)
.+..+.+.+...|+||+.++..+.-.+.... ... ....+...++||+||||||||.+|+++++.+...++.
T Consensus 444 ~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~-~g~--~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~------ 514 (731)
T TIGR02639 444 KLKNLEKNLKAKIFGQDEAIDSLVSSIKRSR-AGL--GNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER------ 514 (731)
T ss_pred HHHHHHHHHhcceeCcHHHHHHHHHHHHHHh-cCC--CCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE------
Confidence 4556788889999999999988874443210 000 0011122368999999999999999999998543221
Q ss_pred cccceeeeecC-------CCCCcccc-ccc----cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 516 AVGLTAYVTKD-------PETGETVL-ESG----ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 516 ~~glta~~~k~-------~~~ge~~l-e~G----al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
+.++.+..+. ...|..-. +.| ++.....+|++||||+++.++.++.|+++|+++.++-. .|....+
T Consensus 515 -~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~ 592 (731)
T TIGR02639 515 -FDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADF 592 (731)
T ss_pred -EeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCC
Confidence 1111110000 00010000 112 22334568999999999999999999999999998732 2332222
Q ss_pred cCceEEEEecCCCCCC-------CCCCC---cccc--cccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCC
Q 003637 584 NARTSVLACANPSGSR-------YNPRL---SVIE--NIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPE 651 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~-------~~~~~---~~~~--~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~ 651 (806)
.++.+|+|+|..... |.... .+.. .-.++|.+++|+|-+++ +...+.+.-..|+++.++.
T Consensus 593 -~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~-F~pLs~e~l~~Iv~~~L~~------ 664 (731)
T TIGR02639 593 -RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIH-FNPLSEEVLEKIVQKFVDE------ 664 (731)
T ss_pred -CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEE-cCCCCHHHHHHHHHHHHHH------
Confidence 258899999974211 11000 0000 12477889999987644 4556666667777776652
Q ss_pred CccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 652 NSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 652 ~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
+.+. +..+.+.-.+++++.++|.+. .+. ....+|.|+.+|+.
T Consensus 665 -----------l~~~--l~~~~~~l~i~~~a~~~La~~--------~~~------~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 665 -----------LSKQ--LNEKNIKLELTDDAKKYLAEK--------GYD------EEFGARPLARVIQE 706 (731)
T ss_pred -----------HHHH--HHhCCCeEEeCHHHHHHHHHh--------CCC------cccCchHHHHHHHH
Confidence 1111 122234457899999999875 111 12457888888854
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=8e-10 Score=129.71 Aligned_cols=204 Identities=20% Similarity=0.179 Sum_probs=123.7
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccc-eEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc---------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN-ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA--------- 516 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in-vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~--------- 516 (806)
.|+|++.+++.|.-.+-.+. . .| +||+|++|+|||++|+.+++.+.-.....+.+...
T Consensus 17 divGQe~vv~~L~~~l~~~r---l---------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR---L---------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ 84 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C---------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence 56799999998876666541 1 15 58999999999999999999874321101111000
Q ss_pred ---ccceeeeecCCC--CCcccccc--ccc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 517 ---VGLTAYVTKDPE--TGETVLES--GAL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 517 ---~glta~~~k~~~--~ge~~le~--Gal----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
..+-.. +.. .+-..++. ..+ ......|++|||+++|+...+++|+..||+- +.
T Consensus 85 g~~~D~iei---daas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~ 148 (647)
T PRK07994 85 GRFVDLIEI---DAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PE 148 (647)
T ss_pred CCCCCceee---cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CC
Confidence 000000 100 11000100 001 1123469999999999999999999999972 23
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.+++ +.-.|+++++||+-.+ ....++.+.+..
T Consensus 149 ~v~FIL~Tt-------------~~~kLl~TI~SRC~~~------------------------------~f~~Ls~~ei~~ 185 (647)
T PRK07994 149 HVKFLLATT-------------DPQKLPVTILSRCLQF------------------------------HLKALDVEQIRQ 185 (647)
T ss_pred CeEEEEecC-------------CccccchHHHhhheEe------------------------------eCCCCCHHHHHH
Confidence 344555555 2345778999998333 345666777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
|+...-......+++++++.|.... .| ++|...+++..+.+. ....|+.++|.+.+
T Consensus 186 ~L~~il~~e~i~~e~~aL~~Ia~~s---------~G--------s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 186 QLEHILQAEQIPFEPRALQLLARAA---------DG--------SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 7766544344568888888887541 12 278887777554332 23456776666544
No 101
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.20 E-value=8.1e-11 Score=136.73 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=106.2
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccc---cCCceeeccccccCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVL---SDRGICCIDEFDKMS 556 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~l---Ad~GIl~IDEidkm~ 556 (806)
.++||+||||||||+++++++..+...++. +..+.........++..+. ..+.. ...+|+||||+|.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~-------i~~~~~~~~~~g~~~~~l~-~~f~~a~~~~p~Il~iDEid~l~ 160 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-------ISGSDFVEMFVGVGASRVR-DLFEQAKKNAPCIIFIDEIDAVG 160 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeee-------ccHHHHHHHHhcccHHHHH-HHHHHHHhcCCCEEEEechhhhh
Confidence 379999999999999999999987554332 1111100000000110111 11222 234799999999875
Q ss_pred HHH--------------HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cc
Q 003637 557 ESA--------------RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RF 620 (806)
Q Consensus 557 ~~~--------------~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RF 620 (806)
... .+.|+..|+. . .-+..+.||||+|.. -.|++++++ ||
T Consensus 161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~-------------~~ld~al~r~gRf 216 (495)
T TIGR01241 161 RQRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRP-------------DVLDPALLRPGRF 216 (495)
T ss_pred hccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCCh-------------hhcCHHHhcCCcc
Confidence 321 1223333321 0 112347899999943 345677776 89
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 003637 621 DLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFP 700 (806)
Q Consensus 621 Dli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~ 700 (806)
|.. +.+..|+.+....|.+..+.... .. ++...+.|.+.
T Consensus 217 d~~-i~i~~Pd~~~R~~il~~~l~~~~--------------------------~~---~~~~l~~la~~----------- 255 (495)
T TIGR01241 217 DRQ-VVVDLPDIKGREEILKVHAKNKK--------------------------LA---PDVDLKAVARR----------- 255 (495)
T ss_pred eEE-EEcCCCCHHHHHHHHHHHHhcCC--------------------------CC---cchhHHHHHHh-----------
Confidence 876 56678888888887776654210 00 11111222211
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 701 GSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 701 gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
..+.|.++++++++.|...|..+....|+.+|+.+|+...
T Consensus 256 -----t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 256 -----TPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 1235567777877776655555556678888888777543
No 102
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-11 Score=132.46 Aligned_cols=172 Identities=27% Similarity=0.320 Sum_probs=116.9
Q ss_pred cccchhhhHHHHh-hhhcCCccccC-CCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVKKGLL-CQLFGGNALKL-PSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK~~il-l~L~g~~~~~~-~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
+|-|.+.+|.++- +.++.-....+ ..|.-.+...+|||+||||||||++|+++++.+ |..+..++....
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-------ga~fInv~~s~l-- 163 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA-------GANFINVSVSNL-- 163 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc-------CCCcceeecccc--
Confidence 4668999888775 22222211122 234455667799999999999999999999998 555555555544
Q ss_pred cCCCCCcccccccccc-----cc---CCceeeccccccCCHHHHHHHHHHHhh--cEEEEeecceeeeecCceEEEEecC
Q 003637 525 KDPETGETVLESGALV-----LS---DRGICCIDEFDKMSESARSMLHEVMEQ--QTVSIAKAGIIASLNARTSVLACAN 594 (806)
Q Consensus 525 k~~~~ge~~le~Gal~-----lA---d~GIl~IDEidkm~~~~~~~L~e~Me~--q~isi~kag~~~~l~~~~siIAAaN 594 (806)
+.+|.-++.+++ +| ...|+||||+|.+-...+..=||+|.. ..+-..-.|....-+.++.|+||+|
T Consensus 164 ----t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 164 ----TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ----chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 335655554433 33 347999999998765545555666532 1121224566666677899999999
Q ss_pred CCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHh
Q 003637 595 PSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSL 645 (806)
Q Consensus 595 p~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~ 645 (806)
. ..+|..++++|+.-. ++.+.|+.+...+|.+-+++.
T Consensus 240 R-------------P~DlDeAiiRR~p~r-f~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 240 R-------------PFDLDEAIIRRLPRR-FHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred C-------------CccHHHHHHHhCcce-eeeCCCchhhHHHHHHHHhcc
Confidence 3 456778999998554 566889988898988888763
No 103
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.7e-11 Score=123.62 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=106.3
Q ss_pred HHHHhhcccccchhhhHHHHhhhhcCCccccC---CCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc
Q 003637 439 TLTRSLAPNIWELDDVKKGLLCQLFGGNALKL---PSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS 515 (806)
Q Consensus 439 ~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~---~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~ 515 (806)
.|.+.+--.++|++..|+.+..+....-.+-. .....--+..||||+||+|+|||.||+.+|+++ ..+|.
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-------nVPFa 126 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-------NVPFA 126 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-------CCCee
Confidence 35556667789999999998877665422111 111122345699999999999999999999999 45566
Q ss_pred cccceeeeecCCCCCccc---c----c--cccccccCCceeeccccccCCH--------------HHHHHHHHHHhhcEE
Q 003637 516 AVGLTAYVTKDPETGETV---L----E--SGALVLSDRGICCIDEFDKMSE--------------SARSMLHEVMEQQTV 572 (806)
Q Consensus 516 ~~glta~~~k~~~~ge~~---l----e--~Gal~lAd~GIl~IDEidkm~~--------------~~~~~L~e~Me~q~i 572 (806)
.+..|....-+ .-|+-+ + . ...+..|.+||++||||||+.. ..|++|+..||-...
T Consensus 127 iADATtLTEAG-YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTva 205 (408)
T COG1219 127 IADATTLTEAG-YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVA 205 (408)
T ss_pred eccccchhhcc-ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCcee
Confidence 56555442221 122211 1 1 1345678899999999999853 378999999998888
Q ss_pred EEeecceeeeecCceEEEEecCCC---CCCCC
Q 003637 573 SIAKAGIIASLNARTSVLACANPS---GSRYN 601 (806)
Q Consensus 573 si~kag~~~~l~~~~siIAAaNp~---~g~~~ 601 (806)
++...|....-+-.+.-+-|+|-. .|.|+
T Consensus 206 sVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~ 237 (408)
T COG1219 206 SVPPQGGRKHPQQEFIQVDTSNILFICGGAFA 237 (408)
T ss_pred ccCCCCCCCCCccceEEEcccceeEEeccccc
Confidence 887766666556677777888853 56665
No 104
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-10 Score=132.32 Aligned_cols=177 Identities=26% Similarity=0.365 Sum_probs=111.9
Q ss_pred ccchhhhHHHHh--hh-------hcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccc
Q 003637 448 IWELDDVKKGLL--CQ-------LFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVG 518 (806)
Q Consensus 448 I~G~e~vK~~il--l~-------L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~g 518 (806)
|-|.+++|..|+ ++ |||. |.+.| ..|||+||||||||.+||++|-.. .
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfss-------glrkR--SGILLYGPPGTGKTLlAKAVATEc--------------s 730 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSS-------GLRKR--SGILLYGPPGTGKTLLAKAVATEC--------------S 730 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhc-------ccccc--ceeEEECCCCCchHHHHHHHHhhc--------------e
Confidence 349999999998 22 3333 33333 489999999999999999999766 3
Q ss_pred ceeeeecCCCC-Ccccccc-----ccc---cccCCceeeccccccCCHH-------------HHHHHHHHHhhcEEEEee
Q 003637 519 LTAYVTKDPET-GETVLES-----GAL---VLSDRGICCIDEFDKMSES-------------ARSMLHEVMEQQTVSIAK 576 (806)
Q Consensus 519 lta~~~k~~~~-ge~~le~-----Gal---~lAd~GIl~IDEidkm~~~-------------~~~~L~e~Me~q~isi~k 576 (806)
|+...+|+|+- +-|+-+. ..+ -.|...|+|+||+|.+.+. .-+.|+.-|+
T Consensus 731 L~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-------- 802 (953)
T KOG0736|consen 731 LNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-------- 802 (953)
T ss_pred eeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh--------
Confidence 44444555421 0111111 112 2355689999999998764 2245555554
Q ss_pred cceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCcc
Q 003637 577 AGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSE 654 (806)
Q Consensus 577 ag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~ 654 (806)
|....-...+.||+|+|... -|.|+|++ |||-.+.+--..+.+....+.+.+.+...-+.
T Consensus 803 -gls~~~s~~VFViGATNRPD-------------LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde---- 864 (953)
T KOG0736|consen 803 -GLSDSSSQDVFVIGATNRPD-------------LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE---- 864 (953)
T ss_pred -cccCCCCCceEEEecCCCcc-------------ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC----
Confidence 33333455689999999543 24577777 99988777666677777788888776543222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCHHH
Q 003637 655 QGVLDLATLTAYVSYARKHIHPKLSDEA 682 (806)
Q Consensus 655 ~~~i~~~~Lk~yi~~ar~~~~p~ls~ea 682 (806)
.++.. ..|+ +++|.++..-
T Consensus 865 --dVdL~------eiAk-~cp~~~TGAD 883 (953)
T KOG0736|consen 865 --DVDLV------EIAK-KCPPNMTGAD 883 (953)
T ss_pred --CcCHH------HHHh-hCCcCCchhH
Confidence 22222 3344 3777787644
No 105
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.18 E-value=1.4e-10 Score=141.57 Aligned_cols=215 Identities=15% Similarity=0.173 Sum_probs=140.1
Q ss_pred HHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCccc
Q 003637 440 LTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSA 516 (806)
Q Consensus 440 l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~ 516 (806)
....-...++|++.....++-.|..... .|++|+||||||||++++.+++.+.... +..+.....
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~------------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQ------------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCc------------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 3333344677999887777665554421 2999999999999999999999874321 111222222
Q ss_pred ccceeeeecCCCCCcccccccc-cc---c-cCCceeeccccccCCH-----HH---HHHHHHHHhhcEEEEeecceeeee
Q 003637 517 VGLTAYVTKDPETGETVLESGA-LV---L-SDRGICCIDEFDKMSE-----SA---RSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 517 ~glta~~~k~~~~ge~~le~Ga-l~---l-Ad~GIl~IDEidkm~~-----~~---~~~L~e~Me~q~isi~kag~~~~l 583 (806)
..+..........|+|.-+-.. +. . ..+.|+||||++.+.. .. -+.|..+|+.|.+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l----------- 317 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL----------- 317 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe-----------
Confidence 3333221111223444221111 11 1 1356999999999853 11 2357777776654
Q ss_pred cCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 584 NARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
.+|+||++.+.+ .-+.+.++|.+||.. +.+..|+.+....|.+.+...+.. ...-.++.+.+
T Consensus 318 ----~~IgaTT~~e~~--------~~~~~d~AL~rRf~~--i~v~eps~~~~~~iL~~~~~~~e~----~~~v~i~d~al 379 (852)
T TIGR03345 318 ----RTIAATTWAEYK--------KYFEKDPALTRRFQV--VKVEEPDEETAIRMLRGLAPVLEK----HHGVLILDEAV 379 (852)
T ss_pred ----EEEEecCHHHHh--------hhhhccHHHHHhCeE--EEeCCCCHHHHHHHHHHHHHhhhh----cCCCeeCHHHH
Confidence 499999976533 246778999999974 477889988888887666553322 23356899999
Q ss_pred HHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHh
Q 003637 664 TAYVSYARKHIHP-KLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 664 k~yi~~ar~~~~p-~ls~ea~~~L~~~y~~lR~ 695 (806)
...+.++.+++.- .+++.|+++|.++-...|.
T Consensus 380 ~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 380 VAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred HHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 9999999987765 6899999999987655554
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-09 Score=127.59 Aligned_cols=207 Identities=18% Similarity=0.149 Sum_probs=123.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc--------cc
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA--------VG 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~--------~g 518 (806)
+|+||+.+++.|.-.+-.+. -..++||+|+||||||++|+.+++.+.-.....+.+... .|
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-----------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-----------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 45799999877775555431 123788999999999999999999884311111111000 00
Q ss_pred --ceeeeecCC--CCCccccc-----cc-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 519 --LTAYVTKDP--ETGETVLE-----SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 519 --lta~~~k~~--~~ge~~le-----~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
...... +. ..+--.++ .. .-......|++|||+++|+...+++|+..||+- +..+.
T Consensus 86 ~hpDv~eI-d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~i 151 (624)
T PRK14959 86 MHVDVVEI-DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVT 151 (624)
T ss_pred CCCceEEE-ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEE
Confidence 000000 00 00000000 00 012245579999999999999999999999972 13355
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++| +...+++.+++|+..+ ....++.+.+.+++.
T Consensus 152 fILaTt-------------~~~kll~TI~SRcq~i------------------------------~F~pLs~~eL~~~L~ 188 (624)
T PRK14959 152 FVLATT-------------EPHKFPVTIVSRCQHF------------------------------TFTRLSEAGLEAHLT 188 (624)
T ss_pred EEEecC-------------ChhhhhHHHHhhhhcc------------------------------ccCCCCHHHHHHHHH
Confidence 666665 1334556788898433 344566666666665
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
..-......++++++++|.+.. .| ++|.+.+++..+. + ...+.|+.++|.+++
T Consensus 189 ~il~~egi~id~eal~lIA~~s---------~G--------dlR~Al~lLeqll--~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 189 KVLGREGVDYDPAAVRLIARRA---------AG--------SVRDSMSLLGQVL--A--LGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHH--H--hcCCCcCHHHHHHHh
Confidence 5433344568999998888652 11 2677777765431 1 245578888877665
No 107
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=130.96 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=115.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcc-cccccccccc---CCceeeccccccC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGET-VLESGALVLS---DRGICCIDEFDKM 555 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~-~le~Gal~lA---d~GIl~IDEidkm 555 (806)
.++||+||||||||++|+++++.+....+. +..+....+ +.|+. ..-...+..| ...|+||||+|.+
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~-------V~~seL~~k--~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l 288 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLR-------VVGSELIQK--YLGDGPKLVRELFRVAEENAPSIVFIDEIDAI 288 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEE-------Eecchhhhh--hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHH
Confidence 379999999999999999999987543221 111111000 11110 0011122222 3469999999976
Q ss_pred CH-----------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchh
Q 003637 556 SE-----------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDL 622 (806)
Q Consensus 556 ~~-----------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDl 622 (806)
.. ..+..+.+.+.+-. |.. -..++.||+|+|.. -.|++++++ |||.
T Consensus 289 ~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATNr~-------------d~LDpaLlRpGRfd~ 347 (438)
T PTZ00361 289 GTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATNRI-------------ESLDPALIRPGRIDR 347 (438)
T ss_pred hccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecCCh-------------HHhhHHhccCCeeEE
Confidence 32 23445555554310 111 12357899999932 235577765 9987
Q ss_pred hhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 003637 623 IYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGS 702 (806)
Q Consensus 623 i~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn 702 (806)
. +.+..|+.+....|.+..+... .+.+.+. .+.+...
T Consensus 348 ~-I~~~~Pd~~~R~~Il~~~~~k~--------------------------~l~~dvd---l~~la~~------------- 384 (438)
T PTZ00361 348 K-IEFPNPDEKTKRRIFEIHTSKM--------------------------TLAEDVD---LEEFIMA------------- 384 (438)
T ss_pred E-EEeCCCCHHHHHHHHHHHHhcC--------------------------CCCcCcC---HHHHHHh-------------
Confidence 6 5668888877777766544311 0111111 1122211
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 003637 703 SKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 703 ~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 747 (806)
..++|..++.++++.|...|.-+.+..|+.+|+.+|+.-+..
T Consensus 385 ---t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 385 ---KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHh
Confidence 123668999999999999988788899999999999877643
No 108
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.17 E-value=1.5e-11 Score=122.25 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=77.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC-CCeeccCCCcccccceeeeec----CCCCCccccccccccccCCceeecccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP-RGIYTSGKGSSAVGLTAYVTK----DPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p-r~~~t~g~~~~~~glta~~~k----~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
.++||+||+|+|||.+++.+++.+. .. ..+...++++.+... ..........+|....+.+||+|||||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~----~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGS----ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SS----CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCC----ccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4899999999999999999999985 22 334555555544320 00000011123445556778999999999
Q ss_pred CCH-----------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 555 MSE-----------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 555 m~~-----------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
+.+ ..|..|+++||.++++-. .|....+ .++.+|+|+|-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd~-~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVDT-SNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEEG-TTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecc-cceEEEe-CCceEEEecccc
Confidence 999 999999999999999843 3323332 358999999964
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.17 E-value=3e-10 Score=139.16 Aligned_cols=239 Identities=15% Similarity=0.228 Sum_probs=144.7
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhc----CCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLF----GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~----g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
.+..|.+.+.-.|+|++.+...+.-.+. |..... +.-.++||+||||||||.+|+++++.+.+. +
T Consensus 558 ~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~ 626 (857)
T PRK10865 558 KLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDS----D 626 (857)
T ss_pred HHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcC----C
Confidence 4567888999999999998777664433 221111 111279999999999999999999987542 3
Q ss_pred CCcccccceeeeecCCC---CC---ccc--cccc----cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecce
Q 003637 512 KGSSAVGLTAYVTKDPE---TG---ETV--LESG----ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGI 579 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~---~g---e~~--le~G----al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~ 579 (806)
.++...++..+...... .| .+. .+.| ++.....++++|||++++++..++.|+++|+++.++-. .|.
T Consensus 627 ~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~-~gr 705 (857)
T PRK10865 627 DAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG-QGR 705 (857)
T ss_pred CcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecC-Cce
Confidence 33333333322111000 00 000 0112 22223558999999999999999999999999988632 233
Q ss_pred eeeecCceEEEEecCCCCCC----CCCC-----Cc---ccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhh
Q 003637 580 IASLNARTSVLACANPSGSR----YNPR-----LS---VIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHF 647 (806)
Q Consensus 580 ~~~l~~~~siIAAaNp~~g~----~~~~-----~~---~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~ 647 (806)
...+. ++.+|+|+|..... |... .. ....-.+.|.|++|+|.+++ +.....+.-..|+++.+....
T Consensus 706 ~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iiv-F~PL~~edl~~Iv~~~L~~l~ 783 (857)
T PRK10865 706 TVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV-FHPLGEQHIASIAQIQLQRLY 783 (857)
T ss_pred EEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEe-cCCCCHHHHHHHHHHHHHHHH
Confidence 33322 36789999974211 1110 00 00122567889999987644 444556666677777665311
Q ss_pred cCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHH
Q 003637 648 ENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLS 721 (806)
Q Consensus 648 ~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla 721 (806)
++ +.++.+...+++++.++|.++ .|.. ...+|.|+.+|+.-
T Consensus 784 ----------------~r---l~~~gi~l~is~~al~~L~~~--------gy~~------~~GARpL~r~I~~~ 824 (857)
T PRK10865 784 ----------------KR---LEERGYEIHISDEALKLLSEN--------GYDP------VYGARPLKRAIQQQ 824 (857)
T ss_pred ----------------HH---HHhCCCcCcCCHHHHHHHHHc--------CCCc------cCChHHHHHHHHHH
Confidence 11 122234457999999999865 3322 24589999888654
No 110
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=6.4e-10 Score=126.98 Aligned_cols=204 Identities=17% Similarity=0.174 Sum_probs=127.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC----CeeccC-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR----GIYTSG----------- 511 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr----~~~t~g----------- 511 (806)
.++||+.+++.+.-.+..+. -.+++||+|+||||||++|+.+++.+.= ..--+|
T Consensus 14 dliGQe~vv~~L~~a~~~~r-----------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~ 82 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK-----------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence 45799999987764444331 1237999999999999999999986521 000000
Q ss_pred CCcccccceeeeecCCCCCcccc----cc-c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 512 KGSSAVGLTAYVTKDPETGETVL----ES-G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~l----e~-G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
......-+.+. + ..|-..+ +. . .-..+...+++|||++.|+.+.+++|+..||+- +.
T Consensus 83 ~~~Dv~eidaa---s-~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~ 145 (491)
T PRK14964 83 NHPDVIEIDAA---S-NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------AP 145 (491)
T ss_pred CCCCEEEEecc---c-CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CC
Confidence 00000111111 0 0111111 10 0 012346679999999999999999999999972 23
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.+++ +.-.++.++.+|+-.+ ....++.+.+.+
T Consensus 146 ~v~fIlatt-------------e~~Kl~~tI~SRc~~~------------------------------~f~~l~~~el~~ 182 (491)
T PRK14964 146 HVKFILATT-------------EVKKIPVTIISRCQRF------------------------------DLQKIPTDKLVE 182 (491)
T ss_pred CeEEEEEeC-------------ChHHHHHHHHHhheee------------------------------ecccccHHHHHH
Confidence 355565555 1234667888998433 334556666777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
++...-+..+..++++++++|.+.. . -++|.+.+++..+.+++ ...|+.++|.+.+
T Consensus 183 ~L~~ia~~Egi~i~~eAL~lIa~~s---------~--------GslR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 183 HLVDIAKKENIEHDEESLKLIAENS---------S--------GSMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---------C--------CCHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7666544455679999999988652 1 23788888887655544 3579999998764
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=6.3e-10 Score=128.11 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=128.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccce-EEECCCCChHHHHHHHHHHHCCCCeec----c-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINI-LLVGDPGTSKSQLLQYIHKLSPRGIYT----S----------- 510 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~inv-LLvG~PGtGKS~la~~ia~~~pr~~~t----~----------- 510 (806)
.|+||+.+++.+.-.+-.+. .+ |+ ||+|+||+|||++|+.+++.+.-.... +
T Consensus 15 eiiGqe~v~~~L~~~I~~gr---l~---------hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR---LA---------HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC---CC---------eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 46899999988887776552 11 54 899999999999999999887321000 0
Q ss_pred CCCcccccceeeeecCCCCCcccc----ccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 511 GKGSSAVGLTAYVTKDPETGETVL----ESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 511 g~~~~~~glta~~~k~~~~ge~~l----e~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
+.......+.+.. ..|--.+ +.. .-..+...|++|||+++|+.+.+++|+..||+- +
T Consensus 83 ~~h~dv~eldaas----~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p 145 (535)
T PRK08451 83 NRHIDIIEMDAAS----NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------P 145 (535)
T ss_pred cCCCeEEEecccc----ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------C
Confidence 0000111111100 0000001 100 112245679999999999999999999999972 3
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
..+.+|.++| +...|++++.||+..+ ....++.+.+.
T Consensus 146 ~~t~FIL~tt-------------d~~kL~~tI~SRc~~~------------------------------~F~~Ls~~ei~ 182 (535)
T PRK08451 146 SYVKFILATT-------------DPLKLPATILSRTQHF------------------------------RFKQIPQNSII 182 (535)
T ss_pred CceEEEEEEC-------------ChhhCchHHHhhceeE------------------------------EcCCCCHHHHH
Confidence 3455555554 2346778899997433 34556667777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+++...-+.....++++++++|.+.. .| ++|.+.+++..+.+.+ ...|+.++|.+.+
T Consensus 183 ~~L~~Il~~EGi~i~~~Al~~Ia~~s---------~G--------dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 183 SHLKTILEKEGVSYEPEALEILARSG---------NG--------SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 77765544445678999999988651 12 3788888887655544 4568888877653
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.5e-09 Score=125.93 Aligned_cols=204 Identities=20% Similarity=0.207 Sum_probs=125.3
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS----------- 515 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~----------- 515 (806)
+|+|++.+++.|.-.+-.+. . .+.+||+||+|+|||++++.+++.+.-.....+.+..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~---~--------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR---V--------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG 85 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence 57899999988886665541 1 1246999999999999999999987421000000000
Q ss_pred -cccceeeeecCCCC--Cccc----ccc-c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 516 -AVGLTAYVTKDPET--GETV----LES-G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 516 -~~glta~~~k~~~~--ge~~----le~-G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
..++. .-+..+ +--. .+. . .-..+...|++|||+++|+...+++|+..||+- +..
T Consensus 86 ~~~d~~---eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~ 149 (576)
T PRK14965 86 RSVDVF---EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPH 149 (576)
T ss_pred CCCCee---eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCC
Confidence 00000 001000 0000 000 0 012345679999999999999999999999972 334
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
+.+|.++| +.-.|+++++||+-.+ ....++.+.+.++
T Consensus 150 ~~fIl~t~-------------~~~kl~~tI~SRc~~~------------------------------~f~~l~~~~i~~~ 186 (576)
T PRK14965 150 VKFIFATT-------------EPHKVPITILSRCQRF------------------------------DFRRIPLQKIVDR 186 (576)
T ss_pred eEEEEEeC-------------ChhhhhHHHHHhhhhh------------------------------hcCCCCHHHHHHH
Confidence 55666665 2345778899998443 3345666666666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 667 VSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 667 i~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
+...-+.....++++++++|.+.. .| ++|.+.+++.-+.+.. .+.|+.+||.+.
T Consensus 187 L~~i~~~egi~i~~~al~~la~~a---------~G--------~lr~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 187 LRYIADQEGISISDAALALVARKG---------DG--------SMRDSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 655433345568999998887652 12 3687777776444332 246888888765
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=3.1e-09 Score=123.77 Aligned_cols=208 Identities=17% Similarity=0.174 Sum_probs=123.4
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccc-eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc-cce----
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN-ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV-GLT---- 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in-vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~-glt---- 520 (806)
.|+|++.+++.+.-.+..+. . .| +||+|+||+|||++|+.+++.+.-.....+.+.... .|.
T Consensus 17 divGq~~v~~~L~~~i~~~~---~---------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR---L---------HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C---------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 46799999998776665441 1 15 589999999999999999998732110111111000 000
Q ss_pred ----eeeecCCC--CCcc----cccc--ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 521 ----AYVTKDPE--TGET----VLES--GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 521 ----a~~~k~~~--~ge~----~le~--Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
....-+.. .+.- .++. -.-..+...|++|||+|+|+...+++|+..||+- +..+.
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~ 151 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVK 151 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEE
Confidence 00000100 0100 0000 0011234579999999999999999999999972 23344
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++| +.-.+++.++||+-.+ ....++.+.+.+|+.
T Consensus 152 fIL~t~-------------d~~kil~tI~SRc~~~------------------------------~f~~l~~~~i~~~L~ 188 (527)
T PRK14969 152 FILATT-------------DPQKIPVTVLSRCLQF------------------------------NLKQMPPPLIVSHLQ 188 (527)
T ss_pred EEEEeC-------------ChhhCchhHHHHHHHH------------------------------hcCCCCHHHHHHHHH
Confidence 555554 1234556788998333 334556666666665
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
..-......+++++++.|.+.. .| ++|...+++..+.+. ....|+.++|.+.+.
T Consensus 189 ~il~~egi~~~~~al~~la~~s---------~G--------slr~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 189 HILEQENIPFDATALQLLARAA---------AG--------SMRDALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 4433334457888888887651 12 278888887665443 366788888887653
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.5e-09 Score=126.72 Aligned_cols=209 Identities=16% Similarity=0.126 Sum_probs=127.6
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccc-eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc--------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN-ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS-------- 515 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in-vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~-------- 515 (806)
+-+|+||+.+++.|.-.+..+. .+ | +||+|++|||||++|+.+++.+.-..-..+.+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r---~~---------ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR---IN---------HAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC---CC---------eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 3467899999998877666552 11 6 5999999999999999999876421000000000
Q ss_pred ----cccceeeeecCC-C-CCccccc----cc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 516 ----AVGLTAYVTKDP-E-TGETVLE----SG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 516 ----~~glta~~~k~~-~-~ge~~le----~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
......... +. . .|--.++ .- .-..++..|++|||++.|+.+.+++|+..||+ .
T Consensus 80 ~~~~~~~~dviei-daas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-------------p 145 (584)
T PRK14952 80 APNGPGSIDVVEL-DAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-------------P 145 (584)
T ss_pred hcccCCCceEEEe-ccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-------------C
Confidence 000011100 11 0 0100000 00 01235678999999999999999999999997 1
Q ss_pred cCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHH
Q 003637 584 NARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATL 663 (806)
Q Consensus 584 ~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~L 663 (806)
+..+.+|.+++ +.-.|++++.||+-.+ .+..++.+.+
T Consensus 146 p~~~~fIL~tt-------------e~~kll~TI~SRc~~~------------------------------~F~~l~~~~i 182 (584)
T PRK14952 146 PEHLIFIFATT-------------EPEKVLPTIRSRTHHY------------------------------PFRLLPPRTM 182 (584)
T ss_pred CCCeEEEEEeC-------------ChHhhHHHHHHhceEE------------------------------EeeCCCHHHH
Confidence 23444555554 1335668888997333 3445667777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 664 TAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 664 k~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.+|+....+.....++++++.+|.+.. .| ++|.+.+++....+.+ ....|+.+++.+.+
T Consensus 183 ~~~L~~i~~~egi~i~~~al~~Ia~~s---------~G--------dlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 183 RALIARICEQEGVVVDDAVYPLVIRAG---------GG--------SPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 777766544445668999988887641 11 3788888877644432 25678888777664
No 115
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.14 E-value=2.7e-10 Score=114.30 Aligned_cols=174 Identities=20% Similarity=0.261 Sum_probs=108.1
Q ss_pred hhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceee
Q 003637 443 SLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAY 522 (806)
Q Consensus 443 si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~ 522 (806)
+..-.|+|+|+....+-+..-.| +.| |++|.||||||||+-+.++++.+-...|..+ ...|.|+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~g---nmP---------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~----vLELNAS 87 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEG---NMP---------NLIISGPPGTGKTTSILCLARELLGDSYKEA----VLELNAS 87 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcC---CCC---------ceEeeCCCCCchhhHHHHHHHHHhChhhhhH----hhhccCc
Confidence 34456889999877665554444 233 9999999999999999999988744333222 1233333
Q ss_pred eecCCCC---Cccccccccccc--cCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 523 VTKDPET---GETVLESGALVL--SDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 523 ~~k~~~~---ge~~le~Gal~l--Ad~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
-.|+-.. .-..+.--.+.+ ....|+++||.|.|....|.+|...||-- ...+++..|||.
T Consensus 88 deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-------------S~ttRFalaCN~-- 152 (333)
T KOG0991|consen 88 DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-------------SNTTRFALACNQ-- 152 (333)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-------------cccchhhhhhcc--
Confidence 2221100 000111112222 33469999999999999999999999953 234677788883
Q ss_pred CCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCC
Q 003637 598 SRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPK 677 (806)
Q Consensus 598 g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ 677 (806)
.-.+-+++.||+.++- +...-+...|++.+..++. .+..
T Consensus 153 -----------s~KIiEPIQSRCAiLR-----------------------------ysklsd~qiL~Rl~~v~k~-Ekv~ 191 (333)
T KOG0991|consen 153 -----------SEKIIEPIQSRCAILR-----------------------------YSKLSDQQILKRLLEVAKA-EKVN 191 (333)
T ss_pred -----------hhhhhhhHHhhhHhhh-----------------------------hcccCHHHHHHHHHHHHHH-hCCC
Confidence 3345588999996661 2222344555666665554 3455
Q ss_pred CCHHHHHHHHH
Q 003637 678 LSDEAAEELTR 688 (806)
Q Consensus 678 ls~ea~~~L~~ 688 (806)
.+++.++.|+-
T Consensus 192 yt~dgLeaiif 202 (333)
T KOG0991|consen 192 YTDDGLEAIIF 202 (333)
T ss_pred CCcchHHHhhh
Confidence 77777777763
No 116
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.4e-09 Score=125.19 Aligned_cols=211 Identities=16% Similarity=0.182 Sum_probs=130.3
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee-ccCCCcccccce----e
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY-TSGKGSSAVGLT----A 521 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~-t~g~~~~~~glt----a 521 (806)
.++||+.+++.+.-.+..+. -..++||+||||||||++|+.+++.+.-... +.+......+.. .
T Consensus 22 dliGq~~vv~~L~~ai~~~r-----------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~ 90 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-----------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS 90 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence 35799999987765555441 1238999999999999999999998853211 111000000000 0
Q ss_pred --------eeecCC--CCCcccc----c-c-ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 522 --------YVTKDP--ETGETVL----E-S-GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 522 --------~~~k~~--~~ge~~l----e-~-Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
...-+. .+|.-.+ + . -.-..+...|++|||++.|+...+++|+..||+. +.
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~ 157 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PP 157 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CC
Confidence 000010 0110000 0 0 0012346789999999999999999999999962 33
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.++|. .-.+++++.+|+-.+ ....++.+.+.+
T Consensus 158 ~~vfI~aTte-------------~~kI~~tI~SRc~~~------------------------------ef~~ls~~el~~ 194 (507)
T PRK06645 158 HIIFIFATTE-------------VQKIPATIISRCQRY------------------------------DLRRLSFEEIFK 194 (507)
T ss_pred CEEEEEEeCC-------------hHHhhHHHHhcceEE------------------------------EccCCCHHHHHH
Confidence 4556666651 234667888887332 234566667777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
|+...-+.....++++++++|.+.. .| ++|.+.+++..+.+++.- -...|+.+||.+.+
T Consensus 195 ~L~~i~~~egi~ie~eAL~~Ia~~s---------~G--------slR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 195 LLEYITKQENLKTDIEALRIIAYKS---------EG--------SARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 7766555455678999999988641 12 389998888776665431 13469999988775
No 117
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.12 E-value=5.8e-10 Score=123.33 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=93.9
Q ss_pred CCceeeccccccCCH------------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccc
Q 003637 543 DRGICCIDEFDKMSE------------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENI 610 (806)
Q Consensus 543 d~GIl~IDEidkm~~------------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i 610 (806)
..||+|||||||+.. ..|..|+..||--++++ |.+...|- ++.+||+ |.|... +.-
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~--~ILFI~~-----GAF~~~----kp~ 316 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTD--HILFIAS-----GAFHVS----KPS 316 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECC--ceeEEec-----CCcCCC----Chh
Confidence 789999999999863 37899999999888775 43322221 2445543 445432 234
Q ss_pred cCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHH
Q 003637 611 HLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK-HIHPKLSDEAAEELTRG 689 (806)
Q Consensus 611 ~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~-~~~p~ls~ea~~~L~~~ 689 (806)
+|-|.|.-||.+++.+ +..+++.-. +||.. + ....+++|..+-+. .+.-.|+++|++.|.+.
T Consensus 317 DlIPEl~GR~Pi~v~L-~~L~~~dL~----~ILte----P--------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~ 379 (443)
T PRK05201 317 DLIPELQGRFPIRVEL-DALTEEDFV----RILTE----P--------KASLIKQYQALLATEGVTLEFTDDAIRRIAEI 379 (443)
T ss_pred hccHHHhCccceEEEC-CCCCHHHHH----HHhcC----C--------hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHH
Confidence 5668888999887544 444443332 33321 0 12467788775443 44557999999999988
Q ss_pred HHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc
Q 003637 690 YVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRL 729 (806)
Q Consensus 690 y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~ 729 (806)
..++.... -.+.+|.|.+++.-.-.-+....
T Consensus 380 A~~~N~~~---------~~iGAR~LrtI~E~~L~d~~Fe~ 410 (443)
T PRK05201 380 AYQVNEKT---------ENIGARRLHTVMEKLLEDISFEA 410 (443)
T ss_pred HHHhcccc---------cccchhhHHHHHHHHHHHHhccC
Confidence 65542111 23568999999987665555443
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.4e-09 Score=131.54 Aligned_cols=206 Identities=17% Similarity=0.110 Sum_probs=120.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccc-eEEECCCCChHHHHHHHHHHHCCCC----eeccCC---------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN-ILLVGDPGTSKSQLLQYIHKLSPRG----IYTSGK--------- 512 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in-vLLvG~PGtGKS~la~~ia~~~pr~----~~t~g~--------- 512 (806)
+|+||+.+++.|.-.+-.+. -. | +||+|++|||||++++.+++.+.=. ...+|.
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----------i~-Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----------IN-HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----------CC-ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 56799999998876665541 11 5 7999999999999999999987310 000111
Q ss_pred -CcccccceeeeecCCC-CCccc---c-cc--ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 513 -GSSAVGLTAYVTKDPE-TGETV---L-ES--GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 513 -~~~~~glta~~~k~~~-~ge~~---l-e~--Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
+.....+.. ..... .+--. + +. -.-......|++|||+|+|+...+++|+..||+- +
T Consensus 84 g~~~~~dv~e--idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P 148 (824)
T PRK07764 84 GGPGSLDVTE--IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------P 148 (824)
T ss_pred CCCCCCcEEE--ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-------------C
Confidence 000011110 10000 00000 0 00 0012345679999999999999999999999972 2
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
..+.+|.++|. .-.|.+.|.||+-++ .+..++.+.|.
T Consensus 149 ~~~~fIl~tt~-------------~~kLl~TIrSRc~~v------------------------------~F~~l~~~~l~ 185 (824)
T PRK07764 149 EHLKFIFATTE-------------PDKVIGTIRSRTHHY------------------------------PFRLVPPEVMR 185 (824)
T ss_pred CCeEEEEEeCC-------------hhhhhHHHHhheeEE------------------------------EeeCCCHHHHH
Confidence 34555655551 223557888998433 33445666666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+|+...-......++++++.+|.+.. .| ++|.+.+++....+.+ ..+.|+.+++...+
T Consensus 186 ~~L~~il~~EGv~id~eal~lLa~~s---------gG--------dlR~Al~eLEKLia~~---~~~~IT~e~V~all 243 (824)
T PRK07764 186 GYLERICAQEGVPVEPGVLPLVIRAG---------GG--------SVRDSLSVLDQLLAGA---GPEGVTYERAVALL 243 (824)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHhhc---CCCCCCHHHHHHHh
Confidence 66655433344567888888887652 11 2566666665433322 25567777776553
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.6e-09 Score=125.66 Aligned_cols=211 Identities=17% Similarity=0.161 Sum_probs=124.7
Q ss_pred hcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccc-----
Q 003637 444 LAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVG----- 518 (806)
Q Consensus 444 i~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~g----- 518 (806)
-+-.++||+.+++.+.-.+..+. ..+.+||+||||+|||++|+.+++.+.-.-...+.+.....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-----------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-----------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 33466799999988776655441 11358999999999999999999987321111011100000
Q ss_pred ---ce-eeeecCCC--CCccccc-----c-ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 519 ---LT-AYVTKDPE--TGETVLE-----S-GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 519 ---lt-a~~~k~~~--~ge~~le-----~-Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
.. ....-+.. .|--.++ . ..-..++.+|++|||++.|+...+++|+..||+- +..
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~ 149 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKH 149 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CCc
Confidence 00 00000100 0000000 0 0112356789999999999999999999999973 223
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
+.+|.+++. .-.|++++++|+..+ ....++.+.+..+
T Consensus 150 tvfIL~Tt~-------------~~KLl~TI~SRcq~i------------------------------eF~~Ls~~eL~~~ 186 (605)
T PRK05896 150 VVFIFATTE-------------FQKIPLTIISRCQRY------------------------------NFKKLNNSELQEL 186 (605)
T ss_pred EEEEEECCC-------------hHhhhHHHHhhhhhc------------------------------ccCCCCHHHHHHH
Confidence 445555541 234567888998544 3455666677766
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 667 VSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 667 i~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+...-......+++++++.|.+.. .| ++|.+.+++.-..+.+ . ..|+.+++.+++
T Consensus 187 L~~il~kegi~Is~eal~~La~lS---------~G--------dlR~AlnlLekL~~y~---~-~~It~e~V~ell 241 (605)
T PRK05896 187 LKSIAKKEKIKIEDNAIDKIADLA---------DG--------SLRDGLSILDQLSTFK---N-SEIDIEDINKTF 241 (605)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc---------CC--------cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 665433344568999988887652 12 2677777766533332 2 338888887754
No 120
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.11 E-value=1.6e-09 Score=133.03 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=143.7
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS 515 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~ 515 (806)
.+..|.+.+.-.|+||+.++..+.-++..... .+. ...+.-..+||+||||||||.+|+.+++.+-.. +..+.
T Consensus 499 ~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~-gl~--~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~~ 571 (821)
T CHL00095 499 KLLHMEETLHKRIIGQDEAVVAVSKAIRRARV-GLK--NPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAMI 571 (821)
T ss_pred HHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh-ccc--CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccceE
Confidence 35578889999999999999888755432100 000 011112368999999999999999999986321 22222
Q ss_pred cccceeeeecCC-------CCCcc-ccccc----cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeee
Q 003637 516 AVGLTAYVTKDP-------ETGET-VLESG----ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASL 583 (806)
Q Consensus 516 ~~glta~~~k~~-------~~ge~-~le~G----al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l 583 (806)
..+++....... ..|-. .-+.| ++......|++|||++++.++.++.|+++||+|.++-.. |....+
T Consensus 572 ~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~-g~~v~~ 650 (821)
T CHL00095 572 RLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSK-GRTIDF 650 (821)
T ss_pred EEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCC-CcEEec
Confidence 222221111000 00000 00112 222334579999999999999999999999999988543 434334
Q ss_pred cCceEEEEecCCCCC---------CCCCCCc---------ccc------cccCCccccCcchhhhhhccCCChHHHHHHH
Q 003637 584 NARTSVLACANPSGS---------RYNPRLS---------VIE------NIHLPPTLLSRFDLIYLILDKADEQTDRRLA 639 (806)
Q Consensus 584 ~~~~siIAAaNp~~g---------~~~~~~~---------~~~------~i~lp~~LlsRFDli~il~d~~~~~~d~~la 639 (806)
.++.+|.|+|.... .|..... +.+ .-.++|.+++|+|-+ +.+...+.+.-..|+
T Consensus 651 -~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~i-i~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 -KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEI-IVFRQLTKNDVWEIA 728 (821)
T ss_pred -CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeE-EEeCCCCHHHHHHHH
Confidence 46999999996421 1211000 000 113678888999766 344555666666676
Q ss_pred HHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHH
Q 003637 640 KHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIR 719 (806)
Q Consensus 640 ~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslir 719 (806)
+..++.. .++ +..+.+...+++++.++|.+. .+. ....+|.|+.+++
T Consensus 729 ~~~l~~l----------------~~r---l~~~~i~l~~~~~~~~~La~~--------~~~------~~~GAR~l~r~i~ 775 (821)
T CHL00095 729 EIMLKNL----------------FKR---LNEQGIQLEVTERIKTLLIEE--------GYN------PLYGARPLRRAIM 775 (821)
T ss_pred HHHHHHH----------------HHH---HHHCCcEEEECHHHHHHHHHh--------cCC------CCCChhhHHHHHH
Confidence 6665421 111 233345567999999999875 111 1234788888875
Q ss_pred H
Q 003637 720 L 720 (806)
Q Consensus 720 l 720 (806)
.
T Consensus 776 ~ 776 (821)
T CHL00095 776 R 776 (821)
T ss_pred H
Confidence 4
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.10 E-value=7.4e-10 Score=135.87 Aligned_cols=209 Identities=15% Similarity=0.131 Sum_probs=135.2
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCcccccceee
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSAVGLTAY 522 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~~glta~ 522 (806)
..++|++.....++-.|.... + -|++|+||||||||.+++.++..+.... +-.+.......++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~-~-----------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT-K-----------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc-c-----------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 347899988887776665432 1 1999999999999999999999864310 001122222222222
Q ss_pred eecCCCCCccccccccc----cccCCceeeccccccCCH--------HHHHHHHHHHhhcEEEEeecceeeeecCceEEE
Q 003637 523 VTKDPETGETVLESGAL----VLSDRGICCIDEFDKMSE--------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVL 590 (806)
Q Consensus 523 ~~k~~~~ge~~le~Gal----~lAd~GIl~IDEidkm~~--------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siI 590 (806)
+......|+|.-.-..+ ....+.|+|||||+.+-. +..+.|..++..+. +.+|
T Consensus 247 ~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~---------------l~~I 311 (821)
T CHL00095 247 LAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE---------------LQCI 311 (821)
T ss_pred hccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC---------------cEEE
Confidence 22222345543222111 112356899999986532 23456666776554 4589
Q ss_pred EecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHH
Q 003637 591 ACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYA 670 (806)
Q Consensus 591 AAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~a 670 (806)
+|+|+.+.+ +.+...+++.+||..+ ....++.+....|.+.+...+.... .-.++.+.+.....++
T Consensus 312 gaTt~~ey~--------~~ie~D~aL~rRf~~I--~v~ep~~~e~~aILr~l~~~~e~~~----~v~i~deal~~i~~ls 377 (821)
T CHL00095 312 GATTLDEYR--------KHIEKDPALERRFQPV--YVGEPSVEETIEILFGLRSRYEKHH----NLSISDKALEAAAKLS 377 (821)
T ss_pred EeCCHHHHH--------HHHhcCHHHHhcceEE--ecCCCCHHHHHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHh
Confidence 999977643 2355678999999865 4456777777788877765433222 2238999999999999
Q ss_pred HhcCCC-CCCHHHHHHHHHHHHHHHh
Q 003637 671 RKHIHP-KLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 671 r~~~~p-~ls~ea~~~L~~~y~~lR~ 695 (806)
.+++.. .+++.|+++|.++....|-
T Consensus 378 ~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 378 DQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred hccCccccCchHHHHHHHHHHHHHHh
Confidence 887765 6889999999988776664
No 122
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.10 E-value=8.5e-10 Score=121.95 Aligned_cols=150 Identities=18% Similarity=0.278 Sum_probs=94.5
Q ss_pred cCCceeeccccccCCH------------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCccccc
Q 003637 542 SDRGICCIDEFDKMSE------------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIEN 609 (806)
Q Consensus 542 Ad~GIl~IDEidkm~~------------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~ 609 (806)
+..||+|||||||+.. ..|..|+..||--++++ |.+...+- ++.+||+ |.|... +.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~--~ILFI~~-----GAF~~~----kp 313 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTD--HILFIAA-----GAFQLA----KP 313 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECC--ceeEEec-----CCcCCC----Ch
Confidence 5789999999999864 26899999999877775 44433222 2445543 344422 23
Q ss_pred ccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHH
Q 003637 610 IHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK-HIHPKLSDEAAEELTR 688 (806)
Q Consensus 610 i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~-~~~p~ls~ea~~~L~~ 688 (806)
-+|-|.|.-||.+++.+ +..+++.- .+||.. + .-..+++|..+-+. .+.-.|+++|++.|.+
T Consensus 314 ~DlIPEl~GR~Pi~v~L-~~L~~edL----~rILte----P--------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~ 376 (441)
T TIGR00390 314 SDLIPELQGRFPIRVEL-QALTTDDF----ERILTE----P--------KNSLIKQYKALMKTEGVNIEFSDEAIKRIAE 376 (441)
T ss_pred hhccHHHhCccceEEEC-CCCCHHHH----HHHhcC----C--------hhHHHHHHHHHHhhcCcEEEEeHHHHHHHHH
Confidence 45668888999887544 44443333 233321 0 11467777766554 3444789999999998
Q ss_pred HHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc
Q 003637 689 GYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRL 729 (806)
Q Consensus 689 ~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~ 729 (806)
...++.... -.+.+|.|.+++.....-+....
T Consensus 377 ~A~~~N~~~---------~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 377 LAYNVNEKT---------ENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred HHHHhcccc---------cccchhhHHHHHHHHHHHHHhcC
Confidence 865542211 23568999999987666555443
No 123
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.10 E-value=2.8e-10 Score=136.68 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=133.3
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccce------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLT------ 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glt------ 520 (806)
.++|++.....++-.|.... ..|+||+||||||||.+++.++..+-.. +.+....++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~------------~~n~LLvGppGvGKT~lae~la~~i~~~----~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR------------KNNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYSLDI 250 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC------------CCCeEEECCCCCCHHHHHHHHHHHHHhc----CCCchhcCCeEEeccH
Confidence 47788887776665555431 1289999999999999999999865221 1111111222
Q ss_pred -eeeecCCCCCcccccc----ccccccCCceeeccccccCC---------HHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 521 -AYVTKDPETGETVLES----GALVLSDRGICCIDEFDKMS---------ESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 521 -a~~~k~~~~ge~~le~----Gal~lAd~GIl~IDEidkm~---------~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
..+......|+|...- ..+....++|+|||||+.+- .+..+.|..+++.+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~--------------- 315 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGK--------------- 315 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCC---------------
Confidence 1111111233332221 11223456899999999771 122344556666543
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
..+|+|+|+.+.+ +.+...++|.+||+. +.++.|+.+....|.+.+...+.. ...-.++.+.++..
T Consensus 316 i~vIgATt~~E~~--------~~~~~D~AL~rRFq~--I~v~ePs~~~~~~IL~~~~~~ye~----~h~v~i~~~al~~a 381 (758)
T PRK11034 316 IRVIGSTTYQEFS--------NIFEKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEA----HHDVRYTAKAVRAA 381 (758)
T ss_pred eEEEecCChHHHH--------HHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHhhh----ccCCCcCHHHHHHH
Confidence 5599999976432 235677999999974 577899999888888876654332 34567888999999
Q ss_pred HHHHHhcCCC-CCCHHHHHHHHHHHHHHH
Q 003637 667 VSYARKHIHP-KLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 667 i~~ar~~~~p-~ls~ea~~~L~~~y~~lR 694 (806)
+.++.+++.. .+++.|.+.|.++....|
T Consensus 382 ~~ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 382 VELAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred HHHhhccccCccChHHHHHHHHHHHHhhc
Confidence 9999887765 689999999988865554
No 124
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2e-09 Score=126.08 Aligned_cols=209 Identities=18% Similarity=0.169 Sum_probs=124.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccce------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLT------ 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glt------ 520 (806)
+|+|++.+++.|.-.+..+. . .+-+||+|++|||||++++.+++.+.-.--....+.+...|.
T Consensus 17 dviGQe~vv~~L~~~l~~~r---l--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR---L--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 46799999998876666552 1 123499999999999999999988742100000000000000
Q ss_pred e--------eeecCCC--CCc-c---ccccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 521 A--------YVTKDPE--TGE-T---VLESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 521 a--------~~~k~~~--~ge-~---~le~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
. ...-+.. .|- . .++.- .-......|++|||+|+|+...+++|+..||+- +
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P 152 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-------------P 152 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------------C
Confidence 0 0000100 010 0 00100 001123469999999999999999999999972 2
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
..+.+|.+++ +.-.+++.++||+..+ ....++.+.+.
T Consensus 153 ~~~~fIL~Tt-------------d~~kil~TIlSRc~~~------------------------------~f~~Ls~eei~ 189 (618)
T PRK14951 153 EYLKFVLATT-------------DPQKVPVTVLSRCLQF------------------------------NLRPMAPETVL 189 (618)
T ss_pred CCeEEEEEEC-------------CchhhhHHHHHhceee------------------------------ecCCCCHHHHH
Confidence 3344555554 1233567788998333 34456666777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
+++...-......++++++++|.+.. .| ++|.+.+++..+.+. ....|+.++|.+.+.
T Consensus 190 ~~L~~i~~~egi~ie~~AL~~La~~s---------~G--------slR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 190 EHLTQVLAAENVPAEPQALRLLARAA---------RG--------SMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 77665444445568999999998652 12 378888887544443 356789888887653
No 125
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.10 E-value=2.4e-09 Score=118.14 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=113.3
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee---
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV--- 523 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~--- 523 (806)
.++|++.++..+.-.+-.+. . .|+||+||||||||++|+++++.+....+ +......++....
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~---~---------~~lll~Gp~GtGKT~la~~~~~~l~~~~~--~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPN---L---------PHLLVQGPPGSGKTAAVRALARELYGDPW--ENNFTEFNVADFFDQG 81 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCC---C---------ceEEEECCCCCCHHHHHHHHHHHhcCccc--ccceEEechhhhhhcc
Confidence 34588888777665443321 1 18999999999999999999998743210 0011111111000
Q ss_pred ----ecCCCCC-------------ccccc------cccc-cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecce
Q 003637 524 ----TKDPETG-------------ETVLE------SGAL-VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGI 579 (806)
Q Consensus 524 ----~k~~~~g-------------e~~le------~Gal-~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~ 579 (806)
..++... .-.++ .+.. ..++..+++|||++.++...+..|+..|++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------- 153 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-------- 153 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--------
Confidence 0000000 00000 0001 12456799999999999999999999998631
Q ss_pred eeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCC
Q 003637 580 IASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLD 659 (806)
Q Consensus 580 ~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~ 659 (806)
..+.+|.++|.. -.+.++|.+|+..+ . ..+++
T Consensus 154 -----~~~~~Il~~~~~-------------~~~~~~L~sr~~~v--~----------------------------~~~~~ 185 (337)
T PRK12402 154 -----RTCRFIIATRQP-------------SKLIPPIRSRCLPL--F----------------------------FRAPT 185 (337)
T ss_pred -----CCCeEEEEeCCh-------------hhCchhhcCCceEE--E----------------------------ecCCC
Confidence 224455555411 12346677887433 1 22334
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 003637 660 LATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVE 739 (806)
Q Consensus 660 ~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~ 739 (806)
.+.+.+++...-......+++++.+.|.+.. +|+ +|.+.+.+.. .+ .....|+.+|+.
T Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~---------~gd--------lr~l~~~l~~---~~--~~~~~It~~~v~ 243 (337)
T PRK12402 186 DDELVDVLESIAEAEGVDYDDDGLELIAYYA---------GGD--------LRKAILTLQT---AA--LAAGEITMEAAY 243 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---------CCC--------HHHHHHHHHH---HH--HcCCCCCHHHHH
Confidence 4445555543322334568889888888651 233 6776655543 22 123468888887
Q ss_pred HHHH
Q 003637 740 EAFR 743 (806)
Q Consensus 740 ~ai~ 743 (806)
+++.
T Consensus 244 ~~~~ 247 (337)
T PRK12402 244 EALG 247 (337)
T ss_pred HHhC
Confidence 7654
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.09 E-value=1.3e-09 Score=133.20 Aligned_cols=248 Identities=15% Similarity=0.183 Sum_probs=151.4
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhc----CCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLF----GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~----g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
-+..|.+.+.-.|+|++.+..++.-.+. |-... .+.--.+||+||||||||.+|+++++.+-.+ .
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~-------~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~ 624 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDP-------RKPLGVFLLVGPSGVGKTETALALAELLYGG----E 624 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCCCHHHHHHHHHHHHhCC----C
Confidence 4566788899999999999888874443 22111 1111268999999999999999999987321 2
Q ss_pred CCcccccceeeeecCC-------CCCccc--cccccc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecc
Q 003637 512 KGSSAVGLTAYVTKDP-------ETGETV--LESGAL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAG 578 (806)
Q Consensus 512 ~~~~~~glta~~~k~~-------~~ge~~--le~Gal----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag 578 (806)
..+...+++.+..... ..| |+ .+.|.+ .....+|++||||+|+.+..++.|+++|+++.++-. .|
T Consensus 625 ~~~~~~dmse~~~~~~~~~l~g~~~g-yvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~-~G 702 (852)
T TIGR03345 625 QNLITINMSEFQEAHTVSRLKGSPPG-YVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDG-EG 702 (852)
T ss_pred cceEEEeHHHhhhhhhhccccCCCCC-cccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecC-CC
Confidence 2223333322211100 001 11 123333 223568999999999999999999999999998743 34
Q ss_pred eeeeecCceEEEEecCCCCCCCCC-----C-----Cc----ccc--cccCCccccCcchhhhhhccCCChHHHHHHHHHH
Q 003637 579 IIASLNARTSVLACANPSGSRYNP-----R-----LS----VIE--NIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHI 642 (806)
Q Consensus 579 ~~~~l~~~~siIAAaNp~~g~~~~-----~-----~~----~~~--~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~i 642 (806)
....+. ++.+|.|+|-....|.. . .. +.. .-.++|++++|+|+ +.+...+.+.-..|+...
T Consensus 703 r~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~i--I~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 703 REIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTV--IPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred cEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeE--EEeCCCCHHHHHHHHHHH
Confidence 444444 58999999975322110 0 00 000 12478999999983 355666777777777666
Q ss_pred HHhhhcCCCCccCCCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH-
Q 003637 643 VSLHFENPENSEQGVLDLATLTAYVSYARK-HIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL- 720 (806)
Q Consensus 643 l~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~-~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl- 720 (806)
++.. .++ +.++ .+...+++++.++|.+.. +. ....+|.|+++|+.
T Consensus 780 L~~l----------------~~r---l~~~~gi~l~i~d~a~~~La~~g--------~~------~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 780 LDRI----------------ARR---LKENHGAELVYSEALVEHIVARC--------TE------VESGARNIDAILNQT 826 (852)
T ss_pred HHHH----------------HHH---HHHhcCceEEECHHHHHHHHHHc--------CC------CCCChHHHHHHHHHH
Confidence 5421 111 2222 344569999999998763 11 12347999888865
Q ss_pred -HHHHHHHhcCCC
Q 003637 721 -SEALARIRLSEL 732 (806)
Q Consensus 721 -a~a~A~l~~~~~ 732 (806)
...+|..-+...
T Consensus 827 i~~~la~~~l~~~ 839 (852)
T TIGR03345 827 LLPELSRQILERL 839 (852)
T ss_pred HHHHHHHHHHhCh
Confidence 334444433333
No 127
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.09 E-value=1.6e-09 Score=118.55 Aligned_cols=198 Identities=18% Similarity=0.186 Sum_probs=117.6
Q ss_pred ccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCC
Q 003637 448 IWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDP 527 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~ 527 (806)
++|++.++..+.-.+-.+. ..|+||+|+||||||++++.+++.+....+ ......+.+. +.
T Consensus 19 ~~g~~~~~~~l~~~i~~~~------------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~----~~~~i~~~~~---~~ 79 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEKN------------MPHLLFAGPPGTGKTTAALALARELYGEDW----RENFLELNAS---DE 79 (319)
T ss_pred hcCcHHHHHHHHHHHhCCC------------CCeEEEECCCCCCHHHHHHHHHHHHcCCcc----ccceEEeccc---cc
Confidence 4588888877775554331 127999999999999999999988633211 1111111111 00
Q ss_pred CCCcc----c---cccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCC
Q 003637 528 ETGET----V---LESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 528 ~~ge~----~---le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~ 600 (806)
..... . .....+..+...+++|||++.+....+..|+..|++. +..+.+|.++|..
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~-------------~~~~~lIl~~~~~---- 142 (319)
T PRK00440 80 RGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-------------SQNTRFILSCNYS---- 142 (319)
T ss_pred cchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC-------------CCCCeEEEEeCCc----
Confidence 00000 0 0001122244679999999999999999999999752 1234566666621
Q ss_pred CCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCH
Q 003637 601 NPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSD 680 (806)
Q Consensus 601 ~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ 680 (806)
-.+.+++.+|+..+ ....++.+.+.+++...-+.....+++
T Consensus 143 ---------~~l~~~l~sr~~~~------------------------------~~~~l~~~ei~~~l~~~~~~~~~~i~~ 183 (319)
T PRK00440 143 ---------SKIIDPIQSRCAVF------------------------------RFSPLKKEAVAERLRYIAENEGIEITD 183 (319)
T ss_pred ---------cccchhHHHHhhee------------------------------eeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12335566776332 233455566666665443334556899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 681 EAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 681 ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
++++.|.+.. .|+ +|.+.+.++.+... ...|+.++|..++
T Consensus 184 ~al~~l~~~~---------~gd--------~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 184 DALEAIYYVS---------EGD--------MRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred HHHHHHHHHc---------CCC--------HHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 9999887641 122 78877777654332 4578888877664
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=4.1e-09 Score=121.72 Aligned_cols=202 Identities=23% Similarity=0.241 Sum_probs=123.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccce-EEECCCCChHHHHHHHHHHHCCC-C-ee-ccCC----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINI-LLVGDPGTSKSQLLQYIHKLSPR-G-IY-TSGK---------- 512 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~inv-LLvG~PGtGKS~la~~ia~~~pr-~-~~-t~g~---------- 512 (806)
.|+||+.++..|.-.+..+. .+ |. ||+||||||||++|+++++.+.- . .. .+|.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~---l~---------ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR---LG---------HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC---CC---------eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 56899999887776555441 11 55 99999999999999999998731 1 00 0010
Q ss_pred -CcccccceeeeecCCCCCccc---c--cccc-ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 513 -GSSAVGLTAYVTKDPETGETV---L--ESGA-LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 513 -~~~~~glta~~~k~~~~ge~~---l--e~Ga-l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
.....-+.+. + ..+--. + .... -..+...+++|||++.|+...++.|+..||+. +.
T Consensus 83 ~h~dv~el~~~---~-~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep-------------~~ 145 (504)
T PRK14963 83 AHPDVLEIDAA---S-NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP-------------PE 145 (504)
T ss_pred CCCceEEeccc---c-cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC-------------CC
Confidence 0000011110 0 001000 0 0011 12345679999999999999999999999873 22
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.++|. .-.+++.+.+|+..+ ....++.+.+.+
T Consensus 146 ~t~~Il~t~~-------------~~kl~~~I~SRc~~~------------------------------~f~~ls~~el~~ 182 (504)
T PRK14963 146 HVIFILATTE-------------PEKMPPTILSRTQHF------------------------------RFRRLTEEEIAG 182 (504)
T ss_pred CEEEEEEcCC-------------hhhCChHHhcceEEE------------------------------EecCCCHHHHHH
Confidence 3445555551 235667888998543 344567777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
|+...-+.....++++++++|.+.. .| .+|.+.+++....+. ...|+.++|.+++
T Consensus 183 ~L~~i~~~egi~i~~~Al~~ia~~s---------~G--------dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 183 KLRRLLEAEGREAEPEALQLVARLA---------DG--------AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 7766444344567899988888651 12 268777777654321 4468888877664
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.07 E-value=3.8e-10 Score=137.17 Aligned_cols=163 Identities=24% Similarity=0.262 Sum_probs=92.5
Q ss_pred cccchhhhHHHHhhhhcCC-ccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec
Q 003637 447 NIWELDDVKKGLLCQLFGG-NALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK 525 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~-~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k 525 (806)
.|.|++.+|+.|.-.+.-. .....-.....+....+||+||||||||++|++++..+... +..+.......+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~-------fi~v~~~~l~~~ 526 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN-------FIAVRGPEILSK 526 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEehHHHhhc
Confidence 4668899888776332210 00000011112233479999999999999999999987433 222222211111
Q ss_pred CCCCCcccccccccc---ccCCceeeccccccCCHH------------HHHHHHHHHhhcEEEEeecceeeeecCceEEE
Q 003637 526 DPETGETVLESGALV---LSDRGICCIDEFDKMSES------------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVL 590 (806)
Q Consensus 526 ~~~~ge~~le~Gal~---lAd~GIl~IDEidkm~~~------------~~~~L~e~Me~q~isi~kag~~~~l~~~~siI 590 (806)
.....+..++ ..+. ....+|+||||+|.+.+. ..+.|+..|+. +. -..++.||
T Consensus 527 ~vGese~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~~--~~~~v~vI 594 (733)
T TIGR01243 527 WVGESEKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------IQ--ELSNVVVI 594 (733)
T ss_pred ccCcHHHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------cc--CCCCEEEE
Confidence 1000111111 1121 234589999999987321 22445555542 10 13468899
Q ss_pred EecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHH
Q 003637 591 ACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHI 642 (806)
Q Consensus 591 AAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~i 642 (806)
||+|. .-.|++++++ |||.+ +.+..|+.+....|.+..
T Consensus 595 ~aTn~-------------~~~ld~allRpgRfd~~-i~v~~Pd~~~R~~i~~~~ 634 (733)
T TIGR01243 595 AATNR-------------PDILDPALLRPGRFDRL-ILVPPPDEEARKEIFKIH 634 (733)
T ss_pred EeCCC-------------hhhCCHhhcCCCccceE-EEeCCcCHHHHHHHHHHH
Confidence 99993 3346688886 99987 566888888877776533
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=5.9e-09 Score=122.23 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=126.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc--------c
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV--------G 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~--------g 518 (806)
.++|++.+++.+.-.+..+. ..+.+||+||+|||||++|+.+++.+.-..-..+.+.... |
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-----------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-----------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNG 85 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcC
Confidence 56799999988876665541 1124788999999999999999998742110111111000 0
Q ss_pred c-eeeeecCCCCCccc--c----cc-c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 519 L-TAYVTKDPETGETV--L----ES-G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 519 l-ta~~~k~~~~ge~~--l----e~-G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
. ...+.-++.++.-+ + +. . .-..+...|++|||+++|+...+++|+..||+- +..+.+
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~if 152 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIF 152 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEE
Confidence 0 00001111110000 0 00 0 012345679999999999999999999999863 234445
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.+++. .-.+++++.||+..+ ....++.+.+.+++.+
T Consensus 153 Ilatt~-------------~~ki~~tI~SRc~~~------------------------------~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 153 ILATTE-------------PHKIPATILSRCQRF------------------------------DFKRISVEDIVERLKY 189 (559)
T ss_pred EEEeCC-------------hhhCcHHHHhHheEE------------------------------ecCCCCHHHHHHHHHH
Confidence 555541 234678888998544 2345666777777766
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.-+.....+++++++.|.+.. .| ++|.+.+++..+.+.+ .+.|+.+||.+++
T Consensus 190 i~~~egi~i~~~al~~ia~~s---------~G--------~~R~al~~Ldq~~~~~----~~~It~~~V~~vl 241 (559)
T PRK05563 190 ILDKEGIEYEDEALRLIARAA---------EG--------GMRDALSILDQAISFG----DGKVTYEDALEVT 241 (559)
T ss_pred HHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 444445578999988888652 12 3788888877654432 4678888887764
No 131
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2.7e-09 Score=120.50 Aligned_cols=212 Identities=14% Similarity=0.126 Sum_probs=125.3
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-eccC----CCccccc---
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-YTSG----KGSSAVG--- 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~t~g----~~~~~~g--- 518 (806)
+|+||+.+++.|.-.+-.+. . .+.+||+||||+|||++|+.+++.+.-.. ++.. ......|
T Consensus 17 eiiGq~~~~~~L~~~~~~~~---~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR---V--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred hccChHHHHHHHHHHHHhCC---c--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 57899999987766555441 1 12499999999999999999998873211 1000 0000000
Q ss_pred ----------ceeeeecC-CCCCcccc----ccc--cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceee
Q 003637 519 ----------LTAYVTKD-PETGETVL----ESG--ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIA 581 (806)
Q Consensus 519 ----------lta~~~k~-~~~ge~~l----e~G--al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~ 581 (806)
........ ...+--.+ +.- .-..++..+++|||+++|+...++.|+..||+-
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep----------- 154 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP----------- 154 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-----------
Confidence 00000000 00000000 000 013456789999999999999999999999862
Q ss_pred eecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHH
Q 003637 582 SLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLA 661 (806)
Q Consensus 582 ~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~ 661 (806)
+..+.+|.+++. .-.+.+++.+|+.++ ....++.+
T Consensus 155 --~~~t~~Il~t~~-------------~~kl~~tl~sR~~~v------------------------------~f~~l~~~ 189 (397)
T PRK14955 155 --PPHAIFIFATTE-------------LHKIPATIASRCQRF------------------------------NFKRIPLE 189 (397)
T ss_pred --CCCeEEEEEeCC-------------hHHhHHHHHHHHHHh------------------------------hcCCCCHH
Confidence 223445555541 123446777887543 34456677
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHH-hcCCCCCHhhHHH
Q 003637 662 TLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARI-RLSELVEKHDVEE 740 (806)
Q Consensus 662 ~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l-~~~~~V~~~Dv~~ 740 (806)
.+.+|+...-+.....+++++.++|.+.. .| ++|.+.+.+....+++.- .....|+.+||.+
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s---------~g--------~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~ 252 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKA---------QG--------SMRDAQSILDQVIAFSVESEGEGSIRYDKVAE 252 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhccccCCCCccCHHHHHH
Confidence 77777765444345569999999998652 12 278777777665555421 1245788877766
Q ss_pred HH
Q 003637 741 AF 742 (806)
Q Consensus 741 ai 742 (806)
++
T Consensus 253 ~v 254 (397)
T PRK14955 253 LL 254 (397)
T ss_pred HH
Confidence 54
No 132
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-09 Score=127.51 Aligned_cols=238 Identities=18% Similarity=0.274 Sum_probs=152.0
Q ss_pred hHHHHHHHhhcccccchhhhHHHHh----hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc
Q 003637 435 NIYETLTRSLAPNIWELDDVKKGLL----CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS 510 (806)
Q Consensus 435 ~~~~~l~~si~P~I~G~e~vK~~il----l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~ 510 (806)
.....+.+.+.-.++||+++..++. .+-.|-...+.|.| ..||+||+|+|||.||+++|..+-.+
T Consensus 480 ~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPig-------sFlF~GPTGVGKTELAkaLA~~Lfg~---- 548 (786)
T COG0542 480 EKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG-------SFLFLGPTGVGKTELAKALAEALFGD---- 548 (786)
T ss_pred HHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCce-------EEEeeCCCcccHHHHHHHHHHHhcCC----
Confidence 3456678889999999999887776 33344433333333 88999999999999999999998532
Q ss_pred CCCcccccceeeeecCC-------CCCcc--cccccccccc----CCceeeccccccCCHHHHHHHHHHHhhcEEEEeec
Q 003637 511 GKGSSAVGLTAYVTKDP-------ETGET--VLESGALVLS----DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKA 577 (806)
Q Consensus 511 g~~~~~~glta~~~k~~-------~~ge~--~le~Gal~lA----d~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~ka 577 (806)
......++++.+..+.. -.| | .-+.|.|..| ...|+++|||+|..++..+.|+++|+.|+++-.++
T Consensus 549 e~aliR~DMSEy~EkHsVSrLIGaPPG-YVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 549 EQALIRIDMSEYMEKHSVSRLIGAPPG-YVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred CccceeechHHHHHHHHHHHHhCCCCC-CceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCC
Confidence 23333344433322210 001 1 1234555444 24799999999999999999999999999984433
Q ss_pred ceeeeecCceEEEEecCCCCCCC---------CCC---Cc-c--cccccCCccccCcchhhhhhccCCChHHHHHHHHHH
Q 003637 578 GIIASLNARTSVLACANPSGSRY---------NPR---LS-V--IENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHI 642 (806)
Q Consensus 578 g~~~~l~~~~siIAAaNp~~g~~---------~~~---~~-~--~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~i 642 (806)
....+ .++.||.|+|-..... ... .. + .-.-.++|.++.|+|-+ +.+..-+.+.-..|+...
T Consensus 628 -r~VdF-rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~I-I~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 628 -RTVDF-RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEI-IPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred -CEEec-ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccE-EeccCCCHHHHHHHHHHH
Confidence 22222 2488999999652110 000 00 1 01236889999999965 345566666666777666
Q ss_pred HHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 643 VSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 643 l~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
++. |.+.+. ++.+.-.+++++.++|.+.+.. + ....|.|..+|+-
T Consensus 705 L~~-----------------l~~~L~--~~~i~l~~s~~a~~~l~~~gyd-------~-------~~GARpL~R~Iq~ 749 (786)
T COG0542 705 LNR-----------------LAKRLA--ERGITLELSDEAKDFLAEKGYD-------P-------EYGARPLRRAIQQ 749 (786)
T ss_pred HHH-----------------HHHHHH--hCCceEEECHHHHHHHHHhccC-------C-------CcCchHHHHHHHH
Confidence 653 222222 4456668999999999876422 1 1346888887754
No 133
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.06 E-value=1.1e-09 Score=113.77 Aligned_cols=182 Identities=20% Similarity=0.282 Sum_probs=106.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHH-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESA- 559 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~- 559 (806)
+++|+|+||||||++|+++++.+... +.....+.+.....+. .+ .+. . +...++++|||++.++...
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~~---~~-~~~--~--~~~~~lLvIDdi~~l~~~~~ 107 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQAD---PE-VLE--G--LEQADLVCLDDVEAIAGQPE 107 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHhH---HH-HHh--h--cccCCEEEEeChhhhcCChH
Confidence 89999999999999999999886432 2222222222111000 00 000 0 1234699999999998744
Q ss_pred -HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCC-ccccCcchh-hhhhccCCChHHHH
Q 003637 560 -RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLP-PTLLSRFDL-IYLILDKADEQTDR 636 (806)
Q Consensus 560 -~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp-~~LlsRFDl-i~il~d~~~~~~d~ 636 (806)
+..|..+++... ..+..+|.++|..... ..+. +.+.+||.. ..+.+..+++
T Consensus 108 ~~~~L~~~l~~~~------------~~~~~iIits~~~~~~----------~~~~~~~L~~r~~~~~~i~l~~l~~---- 161 (226)
T TIGR03420 108 WQEALFHLYNRVR------------EAGGRLLIAGRAAPAQ----------LPLRLPDLRTRLAWGLVFQLPPLSD---- 161 (226)
T ss_pred HHHHHHHHHHHHH------------HcCCeEEEECCCChHH----------CCcccHHHHHHHhcCeeEecCCCCH----
Confidence 788888876421 0112466666643211 1222 455567641 1122233333
Q ss_pred HHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHH
Q 003637 637 RLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIES 716 (806)
Q Consensus 637 ~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Les 716 (806)
+.+..++..........+++++.+.|.+ .|+|| +|+|..
T Consensus 162 ------------------------~e~~~~l~~~~~~~~~~~~~~~l~~L~~---------~~~gn--------~r~L~~ 200 (226)
T TIGR03420 162 ------------------------EEKIAALQSRAARRGLQLPDEVADYLLR---------HGSRD--------MGSLMA 200 (226)
T ss_pred ------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHH---------hccCC--------HHHHHH
Confidence 3333333322112345689999998875 47877 899999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 717 LIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 717 lirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+++.+.+.+.... ..|+.+.+.+++
T Consensus 201 ~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 201 LLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 9999887665444 468888887765
No 134
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.05 E-value=7.5e-10 Score=117.41 Aligned_cols=149 Identities=23% Similarity=0.369 Sum_probs=92.5
Q ss_pred cccchhhhH--HHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 447 NIWELDDVK--KGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 447 ~I~G~e~vK--~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
..+|++.+. .++|-.++-..+. + .++|.||||||||+||+.|+..+....| ..+.++|...
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~i--p---------SmIlWGppG~GKTtlArlia~tsk~~Sy------rfvelSAt~a 201 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRI--P---------SMILWGPPGTGKTTLARLIASTSKKHSY------RFVELSATNA 201 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCC--C---------ceEEecCCCCchHHHHHHHHhhcCCCce------EEEEEecccc
Confidence 456777653 4677666655322 1 7999999999999999999998754321 1222332211
Q ss_pred cCCCCCcc--cccc---ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCC
Q 003637 525 KDPETGET--VLES---GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSR 599 (806)
Q Consensus 525 k~~~~ge~--~le~---Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~ 599 (806)
+ +.+. .++. -......+-|+|||||++++...|..++...|.|.|+ +|+|+....
T Consensus 202 ~---t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~---------------lIGATTENP-- 261 (554)
T KOG2028|consen 202 K---TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT---------------LIGATTENP-- 261 (554)
T ss_pred c---hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE---------------EEecccCCC--
Confidence 1 1110 1110 1111224569999999999999999999999998876 677765222
Q ss_pred CCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHH
Q 003637 600 YNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIV 643 (806)
Q Consensus 600 ~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il 643 (806)
.+.|..+|+||+ .+|++. .-..+.-..|..+-+
T Consensus 262 ---------SFqln~aLlSRC-~VfvLe-kL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 262 ---------SFQLNAALLSRC-RVFVLE-KLPVNAVVTILMRAI 294 (554)
T ss_pred ---------ccchhHHHHhcc-ceeEec-cCCHHHHHHHHHHHH
Confidence 356778999999 444443 333344444444433
No 135
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.03 E-value=1.9e-09 Score=112.45 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=110.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
+++|+|+||||||+||+++++.+... +.....+.+... ... + -......+++|||++.++...+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~----~~~~~~i~~~~~------~~~--~----~~~~~~~~liiDdi~~l~~~~~ 107 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYG----GRNARYLDAASP------LLA--F----DFDPEAELYAVDDVERLDDAQQ 107 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEehHHh------HHH--H----hhcccCCEEEEeChhhcCchHH
Confidence 89999999999999999999876321 222111111111 000 0 1123467999999999999889
Q ss_pred HHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh-hhhhccCCChHHHHHHH
Q 003637 561 SMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL-IYLILDKADEQTDRRLA 639 (806)
Q Consensus 561 ~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl-i~il~d~~~~~~d~~la 639 (806)
..|+.+|+.-.- .....++.+++.... ...+.+.|.+||.- ..+.+..++++.+..++
T Consensus 108 ~~L~~~~~~~~~-----------~~~~~vl~~~~~~~~----------~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 108 IALFNLFNRVRA-----------HGQGALLVAGPAAPL----------ALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred HHHHHHHHHHHH-----------cCCcEEEEeCCCCHH----------hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 999998865210 112334445442211 12233666678742 33334444444333333
Q ss_pred HHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHH
Q 003637 640 KHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIR 719 (806)
Q Consensus 640 ~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslir 719 (806)
..+. . .....+++++.++|.+ .|+|| +|+|..+++
T Consensus 167 ~~~~---------------------------~-~~~v~l~~~al~~L~~---------~~~gn--------~~~l~~~l~ 201 (227)
T PRK08903 167 KAAA---------------------------A-ERGLQLADEVPDYLLT---------HFRRD--------MPSLMALLD 201 (227)
T ss_pred HHHH---------------------------H-HcCCCCCHHHHHHHHH---------hccCC--------HHHHHHHHH
Confidence 2221 1 2346799999999985 58887 899999998
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 720 LSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 720 la~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
.-...|... ...|+...+.+++.
T Consensus 202 ~l~~~~~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 202 ALDRYSLEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHh
Confidence 877666544 46788888887753
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=8e-09 Score=120.79 Aligned_cols=208 Identities=15% Similarity=0.104 Sum_probs=125.7
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc----------c
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS----------A 516 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~----------~ 516 (806)
+|+||+.+++.+.-.+-.+. . .+.+||+||||+|||++|+.+++.+.-.....+.+.. .
T Consensus 17 diiGqe~iv~~L~~~i~~~~---i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK---I--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 57799999998776665541 1 1248999999999999999999987432100000000 0
Q ss_pred ccceeeeecCCC-CCcccccc-----c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 517 VGLTAYVTKDPE-TGETVLES-----G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 517 ~glta~~~k~~~-~ge~~le~-----G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
..+......... .+--.++. - .-..++..+++|||++.|+...+++|+..||+- +..+.+
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vf 152 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVF 152 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEE
Confidence 001101000000 11000000 0 012356679999999999999999999999962 334556
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.+++. .-.|++++.+|+..+ ....++.+.+.+++..
T Consensus 153 I~~tte-------------~~kL~~tI~SRc~~~------------------------------~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 153 IFATTE-------------VHKLPATIKSRCQHF------------------------------NFRLLSLEKIYNMLKK 189 (563)
T ss_pred EEecCC-------------hHHhHHHHHHhceEE------------------------------EecCCCHHHHHHHHHH
Confidence 655541 224668888998533 2344566666666655
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
..+.....++++++++|.+.. .| ++|.+.+++.-+.+.+ ...|+.+++.+++
T Consensus 190 i~~~egi~id~eAl~lLa~~s---------~G--------dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 190 VCLEDQIKYEDEALKWIAYKS---------TG--------SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 443345568999999988652 12 3788888876544432 3568888888765
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.02 E-value=1.5e-09 Score=133.04 Aligned_cols=208 Identities=17% Similarity=0.208 Sum_probs=131.5
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCcccccceee
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSAVGLTAY 522 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~~glta~ 522 (806)
-.++|++.....++-.|..... -|++|+||||||||++++.++..+..+. +-.+.......+.+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 3478999877766665654421 2899999999999999999999885431 001222223333322
Q ss_pred eecCCCCCcccccccc-c---ccc-CCceeeccccccCCHH--------HHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 523 VTKDPETGETVLESGA-L---VLS-DRGICCIDEFDKMSES--------ARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 523 ~~k~~~~ge~~le~Ga-l---~lA-d~GIl~IDEidkm~~~--------~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
+......|+|.-..-. + ..+ ...|+||||++.+... .++.|..+|+.|. ..+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~---------------l~~ 310 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE---------------LHC 310 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCC---------------CeE
Confidence 2111223443221111 1 111 2359999999988532 3556666665543 559
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|||+|+.+.+ .-+++.+++.+||+.+ ....|+.+....+.+.+...+ +....-.++.+.+...+..
T Consensus 311 IgaTt~~e~r--------~~~~~d~al~rRf~~i--~v~eP~~~~~~~iL~~l~~~~----e~~~~v~~~d~a~~~a~~l 376 (857)
T PRK10865 311 VGATTLDEYR--------QYIEKDAALERRFQKV--FVAEPSVEDTIAILRGLKERY----ELHHHVQITDPAIVAAATL 376 (857)
T ss_pred EEcCCCHHHH--------HHhhhcHHHHhhCCEE--EeCCCCHHHHHHHHHHHhhhh----ccCCCCCcCHHHHHHHHHH
Confidence 9999987754 3467789999999864 467788777777776654432 2233456777888877677
Q ss_pred HHhcCCC-CCCHHHHHHHHHHHHHHH
Q 003637 670 ARKHIHP-KLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 670 ar~~~~p-~ls~ea~~~L~~~y~~lR 694 (806)
+.+++.. .|++.|.+++...-..+|
T Consensus 377 s~ry~~~~~~pdkAi~LiD~aaa~~r 402 (857)
T PRK10865 377 SHRYIADRQLPDKAIDLIDEAASSIR 402 (857)
T ss_pred hhccccCCCCChHHHHHHHHHhcccc
Confidence 7766643 799999998877654443
No 138
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.2e-08 Score=120.57 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=121.1
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec-cCCCccc----cccee
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKGSSA----VGLTA 521 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~~~~----~glta 521 (806)
.|+||+.+++.+.-++-.+. . .+.+||+||+|+|||++|+.+++.+.-.... ...+... .+...
T Consensus 19 dIiGQe~~v~~L~~aI~~~r---l--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK---I--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 46799999988776665541 1 1246999999999999999999886321100 0000000 00000
Q ss_pred e-eecCCC--CCcc----ccc-cccc-cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEe
Q 003637 522 Y-VTKDPE--TGET----VLE-SGAL-VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLAC 592 (806)
Q Consensus 522 ~-~~k~~~--~ge~----~le-~Gal-~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAA 592 (806)
- ..-+.. .|.- ..+ .... ..+...|++|||++.|....+++|+..||+- +..+.+|.+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILa 154 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILA 154 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEE
Confidence 0 000000 0000 000 0111 2245679999999999999999999999972 334455555
Q ss_pred cCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHh
Q 003637 593 ANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK 672 (806)
Q Consensus 593 aNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~ 672 (806)
++ +.-.|++++++|+..+ ....++.+.+.+++...-.
T Consensus 155 Tt-------------e~~KLl~TI~SRcq~i------------------------------eF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 155 TT-------------EVHKIPLTILSRVQRF------------------------------NFRRISEDEIVSRLEFILE 191 (725)
T ss_pred cC-------------ChhhhhHHHHhhceeE------------------------------EccCCCHHHHHHHHHHHHH
Confidence 54 1235678889998533 3445666666666655333
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 673 HIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 673 ~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.....+++++++.|.+.. .| ++|.+.+++....+.+ ...|+.+++.+++
T Consensus 192 kegI~id~eAl~~LA~lS---------~G--------slR~AlslLekl~~y~----~~~It~e~V~ell 240 (725)
T PRK07133 192 KENISYEKNALKLIAKLS---------SG--------SLRDALSIAEQVSIFG----NNKITLKNVEELF 240 (725)
T ss_pred HcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 334567888888887652 11 2677777766544332 3347777776643
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.01 E-value=2.7e-09 Score=122.27 Aligned_cols=217 Identities=17% Similarity=0.168 Sum_probs=116.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeecc-CCCcccccceeeeecCCCCCccc--cc---ccccccc---CCceeeccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTS-GKGSSAVGLTAYVTKDPETGETV--LE---SGALVLS---DRGICCIDE 551 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~-g~~~~~~glta~~~k~~~~ge~~--le---~Gal~lA---d~GIl~IDE 551 (806)
++||+||||||||++++++++.+...++.. +.......+.....-....|+.. ++ ..+...+ ...|+||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDE 297 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDE 297 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEeh
Confidence 799999999999999999999986654321 00111111110000000111110 00 0011111 246999999
Q ss_pred cccCCHH--------H----HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC-
Q 003637 552 FDKMSES--------A----RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS- 618 (806)
Q Consensus 552 idkm~~~--------~----~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls- 618 (806)
+|.+-.. . ...|+..|+. .. -..++.||+|+|.. -.|++++++
T Consensus 298 iD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~--~~~~ViVI~ATN~~-------------d~LDpALlRp 353 (512)
T TIGR03689 298 MDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VE--SLDNVIVIGASNRE-------------DMIDPAILRP 353 (512)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHHHhcc---------cc--cCCceEEEeccCCh-------------hhCCHhhcCc
Confidence 9987321 1 1244444432 11 11357899999943 346799998
Q ss_pred -cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHH
Q 003637 619 -RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEEL-----TRGYVE 692 (806)
Q Consensus 619 -RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L-----~~~y~~ 692 (806)
|||.. +.++.|+.+....|.++.+... .+++ +.+.+. ...+......+ ...|.
T Consensus 354 GRfD~~-I~~~~Pd~e~r~~Il~~~l~~~---------l~l~-~~l~~~---------~g~~~a~~~al~~~av~~~~a- 412 (512)
T TIGR03689 354 GRLDVK-IRIERPDAEAAADIFSKYLTDS---------LPLD-ADLAEF---------DGDREATAAALIQRAVDHLYA- 412 (512)
T ss_pred cccceE-EEeCCCCHHHHHHHHHHHhhcc---------CCch-HHHHHh---------cCCCHHHHHHHHHHHHHHHhh-
Confidence 99987 6778999999999888776521 1121 222211 11111111111 11121
Q ss_pred HHhc----------CCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----cCCCCCHhhHHHHHH
Q 003637 693 MRRR----------GNFPGSSKKVITATPRQIESLIRLSEALARIR----LSELVEKHDVEEAFR 743 (806)
Q Consensus 693 lR~~----------~~~~gn~~~~~~it~R~Leslirla~a~A~l~----~~~~V~~~Dv~~ai~ 743 (806)
.+.. +.|.. -...-.+|-..+.+++..|...|.-+ ....++.+|+..|+.
T Consensus 413 ~~~~~~~l~~~~~~g~~~~-l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEV-LYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVL 476 (512)
T ss_pred hhcccceeEEEecCCceee-EeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHH
Confidence 1111 11110 00122467899999999998777533 245788889888874
No 140
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.01 E-value=1.2e-09 Score=136.22 Aligned_cols=194 Identities=14% Similarity=0.232 Sum_probs=113.2
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCC--------CCC--------------------
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDP--------ETG-------------------- 530 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~--------~~g-------------------- 530 (806)
.-.|||+||||||||.||+++|..+.-..++ +.++..+...+ ..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIs-------ISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFIT-------VFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEE-------EEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 3479999999999999999999998554332 22221111000 000
Q ss_pred cc-------c-cccc------ccccc---CCceeeccccccCCHHH-----HHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 531 ET-------V-LESG------ALVLS---DRGICCIDEFDKMSESA-----RSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 531 e~-------~-le~G------al~lA---d~GIl~IDEidkm~~~~-----~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
++ . ...+ .+.+| ...|+||||||.+...+ ...|+..|.... ...-...+.
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VI 1774 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNIL 1774 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEE
Confidence 00 0 0011 13344 34799999999997653 244555554210 001123578
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
||||||... .|+|||++ |||-.+ ..+.|+.....++...++. .
T Consensus 1775 VIAATNRPD-------------~LDPALLRPGRFDR~I-~Ir~Pd~p~R~kiL~ILl~--t------------------- 1819 (2281)
T CHL00206 1775 VIASTHIPQ-------------KVDPALIAPNKLNTCI-KIRRLLIPQQRKHFFTLSY--T------------------- 1819 (2281)
T ss_pred EEEeCCCcc-------------cCCHhHcCCCCCCeEE-EeCCCCchhHHHHHHHHHh--h-------------------
Confidence 999999433 46789988 998764 3344444333333322211 0
Q ss_pred HHHHHhcCCCCCCHH--HHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 667 VSYARKHIHPKLSDE--AAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 667 i~~ar~~~~p~ls~e--a~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
+. ++ +.++ ..+.|.+. ..+.|.++|.+++..|..+|..+....|+.+|+..|+.-
T Consensus 1820 ----kg-~~--L~~~~vdl~~LA~~----------------T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1820 ----RG-FH--LEKKMFHTNGFGSI----------------TMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHR 1876 (2281)
T ss_pred ----cC-CC--CCcccccHHHHHHh----------------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 00 00 1111 11222211 134678999999999999999888999999999999865
Q ss_pred H
Q 003637 745 L 745 (806)
Q Consensus 745 ~ 745 (806)
.
T Consensus 1877 q 1877 (2281)
T CHL00206 1877 Q 1877 (2281)
T ss_pred H
Confidence 4
No 141
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-09 Score=125.23 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcChhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHH
Q 003637 422 SKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 422 ~~~~~i~~l~~~~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~ 501 (806)
+|+.+|-++-++|+.|..+ |. ++. --+||+||||||||.||+++|.
T Consensus 321 ~El~E~V~fLKNP~~Y~~l-----------------------GA---------KiP--kGvLL~GPPGTGKTLLAKAiAG 366 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQEL-----------------------GA---------KIP--KGVLLVGPPGTGKTLLAKAIAG 366 (774)
T ss_pred HHHHHHHHHhcCHHHHHHc-----------------------CC---------cCc--CceEEECCCCCcHHHHHHHHhc
Confidence 4566666777888888766 22 111 1699999999999999999999
Q ss_pred HCCCCeeccCCCcccccceeeeecCCCCCccccccccccccC---CceeeccccccCCHHH------------HHHHHHH
Q 003637 502 LSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSD---RGICCIDEFDKMSESA------------RSMLHEV 566 (806)
Q Consensus 502 ~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd---~GIl~IDEidkm~~~~------------~~~L~e~ 566 (806)
.+.-. |..+.-+..+..-...|. ......+..|. ..|+||||||...... -+.|.+.
T Consensus 367 EAgVP-------F~svSGSEFvE~~~g~~a-srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQl 438 (774)
T KOG0731|consen 367 EAGVP-------FFSVSGSEFVEMFVGVGA-SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQL 438 (774)
T ss_pred ccCCc-------eeeechHHHHHHhcccch-HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHH
Confidence 98444 333322222111100010 00011233332 3699999999764322 1233333
Q ss_pred HhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHH
Q 003637 567 MEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 567 Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~ 644 (806)
+-+ -.|... ...+.++|+||.... |.++|++ |||=. +..|.|+......|.+.
T Consensus 439 l~e------mDgf~~--~~~vi~~a~tnr~d~-------------ld~allrpGRfdr~-i~i~~p~~~~r~~i~~~--- 493 (774)
T KOG0731|consen 439 LVE------MDGFET--SKGVIVLAATNRPDI-------------LDPALLRPGRFDRQ-IQIDLPDVKGRASILKV--- 493 (774)
T ss_pred HHH------hcCCcC--CCcEEEEeccCCccc-------------cCHHhcCCCccccc-eeccCCchhhhHHHHHH---
Confidence 321 123322 256889999996542 2344444 67655 45566766665554432
Q ss_pred hhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHH
Q 003637 645 LHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEAL 724 (806)
Q Consensus 645 ~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~ 724 (806)
|... . .++++..++-. . .. ..+ ++|...|.+++..|+.+
T Consensus 494 -h~~~------------------------~--~~~~e~~dl~~-~--a~----~t~-------gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 494 -HLRK------------------------K--KLDDEDVDLSK-L--AS----LTP-------GFSGADLANLCNEAALL 532 (774)
T ss_pred -Hhhc------------------------c--CCCcchhhHHH-H--Hh----cCC-------CCcHHHHHhhhhHHHHH
Confidence 2211 1 12222222211 1 11 112 24567788888888888
Q ss_pred HHHhcCCCCCHhhHHHHHHHH
Q 003637 725 ARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 725 A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
|.-+....|+..|+..|++..
T Consensus 533 a~r~~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 533 AARKGLREIGTKDLEYAIERV 553 (774)
T ss_pred HHHhccCccchhhHHHHHHHH
Confidence 888888889999998888743
No 142
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.98 E-value=1.2e-08 Score=119.96 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=132.2
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccce-EEECCCCChHHHHHHHHHHHCCC-----------CeeccCCC
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINI-LLVGDPGTSKSQLLQYIHKLSPR-----------GIYTSGKG 513 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~inv-LLvG~PGtGKS~la~~ia~~~pr-----------~~~t~g~~ 513 (806)
..|.|+|+-...|...|....... +.-++ +|+|+||||||.+++++.+.+.. -+|..+..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 346688887777765555432110 11155 59999999999999999876521 12222211
Q ss_pred ccccc-c-e----eeeecCCCCCcc---cccc--ccccccCC--ceeeccccccCCHHHHHHHHHHHhhcEEEEeeccee
Q 003637 514 SSAVG-L-T----AYVTKDPETGET---VLES--GALVLSDR--GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGII 580 (806)
Q Consensus 514 ~~~~g-l-t----a~~~k~~~~ge~---~le~--Gal~lAd~--GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~ 580 (806)
..... + . .+....+..|.. .++. ..+....+ -|++|||||.+....+..|+..++--..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-------- 898 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-------- 898 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------
Confidence 00000 0 0 000011111110 0100 00111122 3799999999988788888888874211
Q ss_pred eeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCH
Q 003637 581 ASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDL 660 (806)
Q Consensus 581 ~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~ 660 (806)
...++.|||.+|...-. ..|.+.+.+||-.-.+ .+.+++.
T Consensus 899 --s~SKLiLIGISNdlDLp----------erLdPRLRSRLg~eeI----------------------------vF~PYTa 938 (1164)
T PTZ00112 899 --INSKLVLIAISNTMDLP----------ERLIPRCRSRLAFGRL----------------------------VFSPYKG 938 (1164)
T ss_pred --cCCeEEEEEecCchhcc----------hhhhhhhhhccccccc----------------------------cCCCCCH
Confidence 23568899999954311 1233456677643212 3355566
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH
Q 003637 661 ATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEE 740 (806)
Q Consensus 661 ~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ 740 (806)
++|..++..........++++|++++.+... ...|+ +|....++|.|...+ ....|+.+||.+
T Consensus 939 EQL~dILk~RAe~A~gVLdDdAIELIArkVA------q~SGD--------ARKALDILRrAgEik---egskVT~eHVrk 1001 (1164)
T PTZ00112 939 DEIEKIIKERLENCKEIIDHTAIQLCARKVA------NVSGD--------IRKALQICRKAFENK---RGQKIVPRDITE 1001 (1164)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh------hcCCH--------HHHHHHHHHHHHhhc---CCCccCHHHHHH
Confidence 6666665544333334689999999986421 11233 799999999887654 366899999999
Q ss_pred HHHHHHHHH
Q 003637 741 AFRLLEVAM 749 (806)
Q Consensus 741 ai~l~~~sl 749 (806)
|+..++...
T Consensus 1002 AleeiE~sr 1010 (1164)
T PTZ00112 1002 ATNQLFDSP 1010 (1164)
T ss_pred HHHHHHhhh
Confidence 997765543
No 143
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.6e-09 Score=124.75 Aligned_cols=126 Identities=29% Similarity=0.357 Sum_probs=77.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeec-cCCCccc--ccceeeeecCCCCCccccccccccccCCceeeccccccCCH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKGSSA--VGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSE 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~~~~--~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~ 557 (806)
.|||+||||||||.||++++..+.-..|. +|-.|.. +|..+..+||.+ .+ +...| .+|+||||+|....
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF-----~q--Akk~a-P~IIFIDEiDAvGr 256 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLF-----EQ--AKKNA-PCIIFIDEIDAVGR 256 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHH-----HH--hhccC-CCeEEEehhhhccc
Confidence 79999999999999999999999776554 4444443 455555444421 11 11112 37999999998754
Q ss_pred HH--------------HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cch
Q 003637 558 SA--------------RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFD 621 (806)
Q Consensus 558 ~~--------------~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFD 621 (806)
.. .+.|+--|+ |.. -+..+.++||+|... -+.++|++ |||
T Consensus 257 ~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRFD 312 (596)
T COG0465 257 QRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRFD 312 (596)
T ss_pred ccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCceEEEecCCCcc-------------cchHhhcCCCCcc
Confidence 32 233333343 222 245678999999442 13355555 887
Q ss_pred hhhhhccCCChHHHHHHH
Q 003637 622 LIYLILDKADEQTDRRLA 639 (806)
Q Consensus 622 li~il~d~~~~~~d~~la 639 (806)
-. ++.+.||-...+.|.
T Consensus 313 Rq-I~V~~PDi~gRe~Il 329 (596)
T COG0465 313 RQ-ILVELPDIKGREQIL 329 (596)
T ss_pred ee-eecCCcchhhHHHHH
Confidence 65 566777655444443
No 144
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=3.1e-08 Score=116.44 Aligned_cols=209 Identities=19% Similarity=0.178 Sum_probs=126.5
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCC-eeccCCCc-cccc----ce
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRG-IYTSGKGS-SAVG----LT 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~-~~t~g~~~-~~~g----lt 520 (806)
.++|++.+++.|.-.+..+. -.+.+||+|++|+|||++|+.+++.+.-. ....+.+. ...| |.
T Consensus 25 dliGq~~~v~~L~~~~~~gr-----------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-----------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 46799999988776555441 12369999999999999999999987321 00000000 0000 00
Q ss_pred ee--------eecCC--CCCccccc----c-c-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 521 AY--------VTKDP--ETGETVLE----S-G-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 521 a~--------~~k~~--~~ge~~le----~-G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
.+ ..-++ ..|-..++ . . .-+.+...|++|||++.|+...+++|+..||+- +
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p 160 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------P 160 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------C
Confidence 00 00000 01100000 0 0 013456789999999999999999999999972 3
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLT 664 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk 664 (806)
..+.+|.++|. .-.+++.+.||+..+ ....++.+.+.
T Consensus 161 ~~~~fIl~tte-------------~~kll~tI~SRcq~~------------------------------~f~~l~~~el~ 197 (598)
T PRK09111 161 PHVKFIFATTE-------------IRKVPVTVLSRCQRF------------------------------DLRRIEADVLA 197 (598)
T ss_pred CCeEEEEEeCC-------------hhhhhHHHHhheeEE------------------------------EecCCCHHHHH
Confidence 34556666551 123556788888433 33445556666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 665 AYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 665 ~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
+++...-+.....++++++++|.+.. . -++|.+.+++.-+.++ ....|+.++|.+.+.
T Consensus 198 ~~L~~i~~kegi~i~~eAl~lIa~~a---------~--------Gdlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 198 AHLSRIAAKEGVEVEDEALALIARAA---------E--------GSVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc---------C--------CCHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 66655433345578999999988652 1 2378888887654443 245799999987753
No 145
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.7e-09 Score=124.28 Aligned_cols=186 Identities=23% Similarity=0.208 Sum_probs=117.4
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccc-----ccccc---CCceeec
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESG-----ALVLS---DRGICCI 549 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~G-----al~lA---d~GIl~I 549 (806)
....+||+||||||||.+|++++..+...+ ..+....+ .+.|..+.. .+..| ...|+||
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f-------i~v~~~~l------~sk~vGesek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF-------ISVKGSEL------LSKWVGESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE-------EEeeCHHH------hccccchHHHHHHHHHHHHHcCCCcEEEE
Confidence 334899999999999999999999774432 22222211 223333332 22233 3589999
Q ss_pred cccccCCHH-----------HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC
Q 003637 550 DEFDKMSES-----------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS 618 (806)
Q Consensus 550 DEidkm~~~-----------~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls 618 (806)
||+|++-.. ..+.|+..|+... -..++.||||+|.. -.+++++++
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN~p-------------~~ld~a~lR 397 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATNRP-------------DDLDPALLR 397 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCCCc-------------cccCHhhcc
Confidence 999987432 3344555554211 11237799999943 356688889
Q ss_pred --cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Q 003637 619 --RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 619 --RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
|||-+ +.++.|+.+....+.++.+.... .+...+-..+.|.+. .
T Consensus 398 ~gRfd~~-i~v~~pd~~~r~~i~~~~~~~~~---------------------------~~~~~~~~~~~l~~~-----t- 443 (494)
T COG0464 398 PGRFDRL-IYVPLPDLEERLEIFKIHLRDKK---------------------------PPLAEDVDLEELAEI-----T- 443 (494)
T ss_pred cCccceE-eecCCCCHHHHHHHHHHHhcccC---------------------------CcchhhhhHHHHHHH-----h-
Confidence 99877 45678888888877776664210 001112222233221 0
Q ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-CCCCCHhhHHHHHHH
Q 003637 697 GNFPGSSKKVITATPRQIESLIRLSEALARIRL-SELVEKHDVEEAFRL 744 (806)
Q Consensus 697 ~~~~gn~~~~~~it~R~Leslirla~a~A~l~~-~~~V~~~Dv~~ai~l 744 (806)
-+.+..++..+++-|...|..+. ...|+.+|+.+|+.-
T Consensus 444 ----------~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 444 ----------EGYSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred ----------cCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 11457889999999988887766 778999999999866
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.6e-08 Score=119.59 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=120.2
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-eccCCCccc-------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-YTSGKGSSA------- 516 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~t~g~~~~~------- 516 (806)
+-+|+|++.+++.|.-.+..+. -.+.+||+|+||+|||++++.+++.+.-.. ...+.+...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 3367899999998876665541 112469999999999999999998874110 000111000
Q ss_pred -cccee-eeecCC--CCCcc----cccc--ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 517 -VGLTA-YVTKDP--ETGET----VLES--GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 517 -~glta-~~~k~~--~~ge~----~le~--Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
.|... ...-+. ..+-- ..+. -.-..++..|++|||+++|+.+.++.|+..||+- +..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep-------------p~~ 150 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPH 150 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC-------------CCC
Confidence 00000 000010 00000 0000 0112356789999999999999999999999973 223
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
+.+|.+++. .-.+.+.+.+|+..+ ....++.+.+.++
T Consensus 151 tv~Il~t~~-------------~~kll~tI~SR~~~i------------------------------~f~~l~~~el~~~ 187 (585)
T PRK14950 151 AIFILATTE-------------VHKVPATILSRCQRF------------------------------DFHRHSVADMAAH 187 (585)
T ss_pred eEEEEEeCC-------------hhhhhHHHHhcccee------------------------------eCCCCCHHHHHHH
Confidence 445555441 112446677887443 2233444555555
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 667 VSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 667 i~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+..........+++++.+.|.+.. .| ++|.+.+.+...... ....|+.+++.+++
T Consensus 188 L~~~a~~egl~i~~eal~~La~~s---------~G--------dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 188 LRKIAAAEGINLEPGALEAIARAA---------TG--------SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc---------CC--------CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 544333334468899888887652 12 367777777643222 35578888887654
No 147
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=1.5e-08 Score=115.95 Aligned_cols=174 Identities=20% Similarity=0.146 Sum_probs=102.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCC-Cc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK-GS----------- 514 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~-~~----------- 514 (806)
+|+||+.++..+.-.+-.+. . .+.+||+||||+|||++|+.+++.+.-..-+.+. +.
T Consensus 18 diiGq~~~v~~L~~~i~~~~---i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR---A--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC---C--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 56799999987765554431 1 1258999999999999999999987321100000 00
Q ss_pred -ccccceeeeecC-CCCCcccc----cc-cc-ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 515 -SAVGLTAYVTKD-PETGETVL----ES-GA-LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 515 -~~~glta~~~k~-~~~ge~~l----e~-Ga-l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
...++... .. ...|--.+ +. .. -..++..|++|||+++|+...+++|+..||+- +..
T Consensus 87 ~~~~d~~~i--~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~ 151 (451)
T PRK06305 87 GTSLDVLEI--DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQH 151 (451)
T ss_pred CCCCceEEe--eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCC
Confidence 00011000 00 00010000 00 00 01256789999999999999999999999972 234
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
+.+|.++|. .-.|.+++.+|+..+ ....++.+.+.++
T Consensus 152 ~~~Il~t~~-------------~~kl~~tI~sRc~~v------------------------------~f~~l~~~el~~~ 188 (451)
T PRK06305 152 VKFFLATTE-------------IHKIPGTILSRCQKM------------------------------HLKRIPEETIIDK 188 (451)
T ss_pred ceEEEEeCC-------------hHhcchHHHHhceEE------------------------------eCCCCCHHHHHHH
Confidence 556666651 234557888998544 3344555666666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHH
Q 003637 667 VSYARKHIHPKLSDEAAEELTRG 689 (806)
Q Consensus 667 i~~ar~~~~p~ls~ea~~~L~~~ 689 (806)
+...-+.....+++++++.|...
T Consensus 189 L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 189 LALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH
Confidence 55432223445788888888754
No 148
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.96 E-value=1e-08 Score=106.12 Aligned_cols=146 Identities=20% Similarity=0.219 Sum_probs=107.9
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
.|++||||++.++-+.-..||.++|.- -...+|.|+|..-.-.+....+.....+|+.|++|.=++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~--------------iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP--------------IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC--------------CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 489999999999999999999999963 224578888865333333333444678999999997333
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~ 703 (806)
.-..++.+.++++|..-.+.....++++|.++|.+.-
T Consensus 363 ------------------------------rt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g------------- 399 (456)
T KOG1942|consen 363 ------------------------------RTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG------------- 399 (456)
T ss_pred ------------------------------eeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc-------------
Confidence 2234566777777765555455679999999988651
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHHH
Q 003637 704 KKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAM 749 (806)
Q Consensus 704 ~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~sl 749 (806)
..-|+|....++--+-.+|++++++.|..+|++++..||..+-
T Consensus 400 ---t~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 400 ---TSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred ---cchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhch
Confidence 1235777777777777899999999999999999999986543
No 149
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.96 E-value=4.7e-09 Score=114.66 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=73.8
Q ss_pred cccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCcc
Q 003637 536 SGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPT 615 (806)
Q Consensus 536 ~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~ 615 (806)
.|.+..|++||+.|+|+.|.+.+.+..|+.+++++.+.+. +....++.+..|||++|+.+.. .. .+...+++
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~--~~----~~~k~~ea 300 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQ--RF----KSNKKNEA 300 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHh--hh----hccccchh
Confidence 3899999999999999999999999999999999999865 4444677888999999987522 11 13344699
Q ss_pred ccCcchhhhhhccCC-ChHHHHHHHHHHHH
Q 003637 616 LLSRFDLIYLILDKA-DEQTDRRLAKHIVS 644 (806)
Q Consensus 616 LlsRFDli~il~d~~-~~~~d~~la~~il~ 644 (806)
|++|+..+. ..++ +-....+|.+..+.
T Consensus 301 f~dR~~~i~--vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 301 LLDRIIKVK--VPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhceEEEe--CCCcCCHHHHHHHHHHHhc
Confidence 999997442 2333 34455566666654
No 150
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.95 E-value=2e-09 Score=132.54 Aligned_cols=208 Identities=17% Similarity=0.197 Sum_probs=132.6
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---eccCCCcccccceeee
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSGKGSSAVGLTAYV 523 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t~g~~~~~~glta~~ 523 (806)
.++|++.....++-.|..... -|++|+||||||||++++.++..+..+. +..+.......+.+.+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~------------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~ 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTK------------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCC------------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence 478999877777766655421 1899999999999999999999874421 0112222222222221
Q ss_pred ecCCCCCcccccc-cccc---cc-CCceeeccccccCCH--------HHHHHHHHHHhhcEEEEeecceeeeecCceEEE
Q 003637 524 TKDPETGETVLES-GALV---LS-DRGICCIDEFDKMSE--------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVL 590 (806)
Q Consensus 524 ~k~~~~ge~~le~-Gal~---lA-d~GIl~IDEidkm~~--------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siI 590 (806)
......|+|...- ..+. .. ...|+||||++.+.. +..+.|..+++.+ +..+|
T Consensus 242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g---------------~i~~I 306 (852)
T TIGR03346 242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG---------------ELHCI 306 (852)
T ss_pred hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC---------------ceEEE
Confidence 1111223332111 1111 11 356999999998752 2334454444443 35699
Q ss_pred EecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHH
Q 003637 591 ACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYA 670 (806)
Q Consensus 591 AAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~a 670 (806)
+|+|+.+.+ ..+.+.+++.+||..+ ....|+.+.-..|.+.+...+ +....-.++.+.+...+.++
T Consensus 307 gaTt~~e~r--------~~~~~d~al~rRf~~i--~v~~p~~~~~~~iL~~~~~~~----e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 307 GATTLDEYR--------KYIEKDAALERRFQPV--FVDEPTVEDTISILRGLKERY----EVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred EeCcHHHHH--------HHhhcCHHHHhcCCEE--EeCCCCHHHHHHHHHHHHHHh----ccccCCCCCHHHHHHHHHhc
Confidence 999976644 2367789999999764 567788777777766654432 22344567888999999999
Q ss_pred HhcCCC-CCCHHHHHHHHHHHHHHHh
Q 003637 671 RKHIHP-KLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 671 r~~~~p-~ls~ea~~~L~~~y~~lR~ 695 (806)
.+++.. .+++.|+++|.+.-...|.
T Consensus 373 ~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 373 HRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred cccccccCCchHHHHHHHHHHHHHHh
Confidence 887766 6899999999988766554
No 151
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=2.5e-08 Score=111.74 Aligned_cols=206 Identities=15% Similarity=0.204 Sum_probs=116.9
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc-CC--Ccccccceeee
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS-GK--GSSAVGLTAYV 523 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~-g~--~~~~~glta~~ 523 (806)
+++||+.+++.+.-.+-.+.- ..++||+||||+|||++++.+++.+....++. +. +.....+.+..
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~-----------~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~ 86 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHL-----------AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAAS 86 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCC-----------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecccc
Confidence 457999999887766654411 13899999999999999999999875421111 11 11111111100
Q ss_pred ecCCCCCcc--ccc-cccc-cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCC
Q 003637 524 TKDPETGET--VLE-SGAL-VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSR 599 (806)
Q Consensus 524 ~k~~~~ge~--~le-~Gal-~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~ 599 (806)
..+ ..+. .++ .... ..++..+++|||++.|....++.|+..||+. +..+.+|.++|.
T Consensus 87 ~~~--~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~---- 147 (367)
T PRK14970 87 NNS--VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTE---- 147 (367)
T ss_pred CCC--HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCC----
Confidence 000 0000 011 0111 2345679999999999999999999988762 223445555551
Q ss_pred CCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCC
Q 003637 600 YNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLS 679 (806)
Q Consensus 600 ~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls 679 (806)
.-.+.+++.+|+-.+ ....++.+.+..++...-+...-.++
T Consensus 148 ---------~~kl~~~l~sr~~~v------------------------------~~~~~~~~~l~~~l~~~~~~~g~~i~ 188 (367)
T PRK14970 148 ---------KHKIIPTILSRCQIF------------------------------DFKRITIKDIKEHLAGIAVKEGIKFE 188 (367)
T ss_pred ---------cccCCHHHHhcceeE------------------------------ecCCccHHHHHHHHHHHHHHcCCCCC
Confidence 224557788888433 22334445555555432222344688
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 680 DEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 680 ~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
+++.+.|.+.. .| ++|.+.+.++.....+ ... |+.+++.+++
T Consensus 189 ~~al~~l~~~~---------~g--------dlr~~~~~lekl~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 189 DDALHIIAQKA---------DG--------ALRDALSIFDRVVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred HHHHHHHHHhC---------CC--------CHHHHHHHHHHHHHhc---CCC-CCHHHHHHHh
Confidence 99988888641 11 2677766665443332 122 6766666554
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.94 E-value=1.1e-08 Score=113.87 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=116.7
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS----------- 515 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~----------- 515 (806)
.|+|++.++..+.-.+..+. . ...+||+||||+|||++++.+++.+.-.......+..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~---~--------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~ 83 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR---I--------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSG 83 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC---C--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 56799999988776665441 1 1257999999999999999999887432000000000
Q ss_pred -cccceeeeecCCCCCcc----ccc-cccc-cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 516 -AVGLTAYVTKDPETGET----VLE-SGAL-VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 516 -~~glta~~~k~~~~ge~----~le-~Gal-~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
..++... ......+.. ..+ .... ..++..+++|||++.|+...++.|+..||+. +..+.
T Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~ 149 (355)
T TIGR02397 84 SSLDVIEI-DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVV 149 (355)
T ss_pred CCCCEEEe-eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------cccee
Confidence 0001000 000000100 000 1111 2345679999999999999999999999862 23455
Q ss_pred EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS 668 (806)
Q Consensus 589 iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~ 668 (806)
+|.++|. .-.+.+++.+|+..+ ....++.+.+.+|+.
T Consensus 150 lIl~~~~-------------~~~l~~~l~sr~~~~------------------------------~~~~~~~~~l~~~l~ 186 (355)
T TIGR02397 150 FILATTE-------------PHKIPATILSRCQRF------------------------------DFKRIPLEDIVERLK 186 (355)
T ss_pred EEEEeCC-------------HHHHHHHHHhheeEE------------------------------EcCCCCHHHHHHHHH
Confidence 6666551 123446777887433 223344555555554
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 669 YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 669 ~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
..-+.....+++++.+.|.+.. .| ++|.+.+.+..+...+ ...|+.+||.+++
T Consensus 187 ~~~~~~g~~i~~~a~~~l~~~~---------~g--------~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 187 KILDKEGIKIEDEALELIARAA---------DG--------SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc---------CC--------ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 3222233468888888887641 11 2566666654443332 2457888777654
No 153
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.9e-09 Score=119.63 Aligned_cols=156 Identities=21% Similarity=0.282 Sum_probs=97.2
Q ss_pred ccchhhhHHHHhhhhcCCcccc---CCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 448 IWELDDVKKGLLCQLFGGNALK---LPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~---~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
|-|+++|+..+-++++--..+. ...|... ...|||+||||||||.||+++|+.+ |. ..+.+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~--PsGvLL~GPPGCGKTLlAKAVANEa-------g~-------NFisV 576 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDA--PSGVLLCGPPGCGKTLLAKAVANEA-------GA-------NFISV 576 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCC--CCceEEeCCCCccHHHHHHHHhhhc-------cC-------ceEee
Confidence 4467777777765555432211 1124333 3479999999999999999999987 33 33334
Q ss_pred cCCC-CCccccccc-----ccccc---CCceeeccccccCCHH-----------HHHHHHHHHhhcEEEEeecceeeeec
Q 003637 525 KDPE-TGETVLESG-----ALVLS---DRGICCIDEFDKMSES-----------ARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 525 k~~~-~ge~~le~G-----al~lA---d~GIl~IDEidkm~~~-----------~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
|+++ -+.|+-|.. .|..| ...|+|+||||.|-+. ..+.|+.-|+- ... .
T Consensus 577 KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG---------l~~--R 645 (802)
T KOG0733|consen 577 KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG---------LEE--R 645 (802)
T ss_pred cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc---------ccc--c
Confidence 4432 122333321 12222 3479999999988553 23555555542 111 1
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHH
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~ 644 (806)
..+.||||+|... -+.|++++ |||-+ ++.+.|+.++...|.+.+++
T Consensus 646 ~gV~viaATNRPD-------------iIDpAiLRPGRlDk~-LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 646 RGVYVIAATNRPD-------------IIDPAILRPGRLDKL-LYVGLPNAEERVAILKTITK 693 (802)
T ss_pred cceEEEeecCCCc-------------ccchhhcCCCccCce-eeecCCCHHHHHHHHHHHhc
Confidence 2377999999543 24466666 88766 56688999888888887776
No 154
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.89 E-value=9.4e-09 Score=122.68 Aligned_cols=184 Identities=23% Similarity=0.318 Sum_probs=108.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeec-cCCCccc--ccceeeeecCCCCCccccccccccc---cCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKGSSA--VGLTAYVTKDPETGETVLESGALVL---SDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~~~~--~glta~~~k~~~~ge~~le~Gal~l---Ad~GIl~IDEidk 554 (806)
+|||+||||||||+++++++..+....+. ++..+.. .|. +...+. ..+.. ....|+||||+|.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~----------~~~~~~-~~f~~a~~~~P~IifIDEiD~ 255 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV----------GASRVR-DMFEQAKKAAPCIIFIDEIDA 255 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc----------cHHHHH-HHHHHHHhcCCcEEEehhHhh
Confidence 69999999999999999999988654332 1111100 011 111110 01111 1346999999998
Q ss_pred CCHH--------------HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--
Q 003637 555 MSES--------------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS-- 618 (806)
Q Consensus 555 m~~~--------------~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls-- 618 (806)
+... ..+.|+..|+. + .-+..+.+|||+|... .|++++++
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~---------~~~~~vivIaaTN~p~-------------~lD~Al~Rpg 311 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDG--F---------EGNEGIIVIAATNRPD-------------VLDPALLRPG 311 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHhhhc--c---------cCCCCeeEEEecCChh-------------hcCHHHhCCc
Confidence 7321 12333333432 1 1145688999999543 35577775
Q ss_pred cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCC
Q 003637 619 RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGN 698 (806)
Q Consensus 619 RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~ 698 (806)
|||-. +.++.|+.+...+|.+..+... . +.+.+. ...|.+.
T Consensus 312 Rfdr~-i~v~~Pd~~~R~~Il~~~~~~~----~----------------------l~~~~d---~~~la~~--------- 352 (644)
T PRK10733 312 RFDRQ-VVVGLPDVRGREQILKVHMRRV----P----------------------LAPDID---AAIIARG--------- 352 (644)
T ss_pred ccceE-EEcCCCCHHHHHHHHHHHhhcC----C----------------------CCCcCC---HHHHHhh---------
Confidence 89876 4567888877777765544311 0 111111 1122211
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 699 FPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 699 ~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
..++|.++|.++++.|...|.-..+..|+..|+.+|+..+
T Consensus 353 -------t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 353 -------TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 1246788888888888887877777888888888887533
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=5.1e-08 Score=112.35 Aligned_cols=208 Identities=18% Similarity=0.205 Sum_probs=123.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc-ccce-----
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA-VGLT----- 520 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~-~glt----- 520 (806)
.++||+.+++.+.-.+-.+. .+ +..||+||||+|||++|+.+++.+.-.--..+.+... .+|.
T Consensus 17 diiGq~~i~~~L~~~i~~~~---i~--------hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR---VS--------HAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKG 85 (486)
T ss_pred HccChHHHHHHHHHHHHcCC---CC--------eEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcC
Confidence 45799999988876665542 11 1357899999999999999999874210000000000 0000
Q ss_pred ---eeeecCC--CCCcc---cc-c-ccc-ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 521 ---AYVTKDP--ETGET---VL-E-SGA-LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 521 ---a~~~k~~--~~ge~---~l-e-~Ga-l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
....-+. ..|-- .+ + ... -..+...|++|||+++|+...+++|+..||+. +..+.+
T Consensus 86 ~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~ 152 (486)
T PRK14953 86 SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIF 152 (486)
T ss_pred CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEE
Confidence 0000000 01100 00 0 000 12345689999999999999999999999863 223445
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSY 669 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ 669 (806)
|.++|. .-.+++++.+|+..+ ....++.+.+.+|+..
T Consensus 153 Il~tt~-------------~~kl~~tI~SRc~~i------------------------------~f~~ls~~el~~~L~~ 189 (486)
T PRK14953 153 ILCTTE-------------YDKIPPTILSRCQRF------------------------------IFSKPTKEQIKEYLKR 189 (486)
T ss_pred EEEECC-------------HHHHHHHHHHhceEE------------------------------EcCCCCHHHHHHHHHH
Confidence 544441 123556777887433 2345666777777765
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 670 ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 670 ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.-+.....++++++++|.+.. .|+ +|.+.++++.+.+.+ ...|+.++|.+++
T Consensus 190 i~k~egi~id~~al~~La~~s---------~G~--------lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 190 ICNEEKIEYEEKALDLLAQAS---------EGG--------MRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHcCCCCCHHHHHHHHHHc---------CCC--------HHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 444344568899999888652 122 788888887655442 4568888888754
No 156
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4.3e-08 Score=115.97 Aligned_cols=175 Identities=20% Similarity=0.195 Sum_probs=102.1
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee------ccCCCc----cc
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY------TSGKGS----SA 516 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~------t~g~~~----~~ 516 (806)
.++||+.+++.|.-.+..+. -..++||+||||+|||++|+.+++.+.-... .+|.-. ..
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-----------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-----------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIA 85 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHh
Confidence 46799999888776555441 1248999999999999999999999743210 011000 00
Q ss_pred cc--ceeeeecCCC--CCcccc----cc--ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 517 VG--LTAYVTKDPE--TGETVL----ES--GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 517 ~g--lta~~~k~~~--~ge~~l----e~--Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
.| ...... +.. .+--.+ +. -.-+.+...|++|||+++|+.+.+++|+..||+- +..
T Consensus 86 ~g~h~D~~ei-~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~ 151 (620)
T PRK14948 86 AGNALDVIEI-DAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPR 151 (620)
T ss_pred cCCCccEEEE-eccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcC
Confidence 00 000000 110 110000 00 0112345679999999999999999999999962 233
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY 666 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y 666 (806)
+.+|.++|- .-.+.+++.+|+..+ ....++.+.+.++
T Consensus 152 tvfIL~t~~-------------~~~llpTIrSRc~~~------------------------------~f~~l~~~ei~~~ 188 (620)
T PRK14948 152 VVFVLATTD-------------PQRVLPTIISRCQRF------------------------------DFRRIPLEAMVQH 188 (620)
T ss_pred eEEEEEeCC-------------hhhhhHHHHhheeEE------------------------------EecCCCHHHHHHH
Confidence 445555541 123457788998544 2234455555555
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHH
Q 003637 667 VSYARKHIHPKLSDEAAEELTRG 689 (806)
Q Consensus 667 i~~ar~~~~p~ls~ea~~~L~~~ 689 (806)
+..........+++++++.|.+.
T Consensus 189 L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 189 LSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 55433333445788888877755
No 157
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.4e-08 Score=116.22 Aligned_cols=209 Identities=13% Similarity=0.166 Sum_probs=123.6
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-e-----------ccCCC-
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-Y-----------TSGKG- 513 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~-----------t~g~~- 513 (806)
+|+||+.+++.|.-.+-.+. -.+.+||+||||||||++|+.+++.+.-.. . .+|.-
T Consensus 17 eivGQe~i~~~L~~~i~~~r-----------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR-----------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 56799999998766555441 112599999999999999999998873210 0 00000
Q ss_pred -------cccccceeeeecCC--CCCcccccc--cc----ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecc
Q 003637 514 -------SSAVGLTAYVTKDP--ETGETVLES--GA----LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAG 578 (806)
Q Consensus 514 -------~~~~glta~~~k~~--~~ge~~le~--Ga----l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag 578 (806)
....++... +. ..+--.++. .. -..++..|++|||+++|+...+++|+..||+-
T Consensus 86 sC~~~~~g~~~n~~~~---d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------- 154 (620)
T PRK14954 86 SCRDFDAGTSLNISEF---DAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------- 154 (620)
T ss_pred HHHHHhccCCCCeEEe---cccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--------
Confidence 000011100 10 000000000 00 13456789999999999999999999999972
Q ss_pred eeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCC
Q 003637 579 IIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVL 658 (806)
Q Consensus 579 ~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i 658 (806)
+..+.+|.+++. .-.|.+++.+|+.++ ....+
T Consensus 155 -----p~~tv~IL~t~~-------------~~kLl~TI~SRc~~v------------------------------ef~~l 186 (620)
T PRK14954 155 -----PPHAIFIFATTE-------------LHKIPATIASRCQRF------------------------------NFKRI 186 (620)
T ss_pred -----CCCeEEEEEeCC-------------hhhhhHHHHhhceEE------------------------------ecCCC
Confidence 223344444431 124557778887544 34566
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHH-hcCCCCCHhh
Q 003637 659 DLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARI-RLSELVEKHD 737 (806)
Q Consensus 659 ~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l-~~~~~V~~~D 737 (806)
+.+.+.+|+...-+.....++++++++|.+.. .| ++|.+.+.+....+++.- .....|+.++
T Consensus 187 ~~~ei~~~L~~i~~~egi~I~~eal~~La~~s---------~G--------dlr~al~eLeKL~~y~~~~~~~~~It~~~ 249 (620)
T PRK14954 187 PLDEIQSQLQMICRAEGIQIDADALQLIARKA---------QG--------SMRDAQSILDQVIAFSVGSEAEKVIAYQG 249 (620)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh---------CC--------CHHHHHHHHHHHHHhccccccCCccCHHH
Confidence 77777777765444345568999999988652 11 267777766554444310 1134577777
Q ss_pred HHHHH
Q 003637 738 VEEAF 742 (806)
Q Consensus 738 v~~ai 742 (806)
|.+.+
T Consensus 250 V~~lv 254 (620)
T PRK14954 250 VAELL 254 (620)
T ss_pred HHHHH
Confidence 76654
No 158
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.6e-09 Score=106.98 Aligned_cols=195 Identities=24% Similarity=0.318 Sum_probs=108.5
Q ss_pred ccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccccee--eeecCCCCCccccccccccccC---Cceeec
Q 003637 475 SFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTA--YVTKDPETGETVLESGALVLSD---RGICCI 549 (806)
Q Consensus 475 ~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta--~~~k~~~~ge~~le~Gal~lAd---~GIl~I 549 (806)
.++..-.+|++||||||||.+||+++...... ...|.. .+.---..|. .+-..++.+|. ..|+||
T Consensus 201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT---------FLKLAgPQLVQMfIGdGA-kLVRDAFaLAKEkaP~IIFI 270 (424)
T KOG0652|consen 201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNAT---------FLKLAGPQLVQMFIGDGA-KLVRDAFALAKEKAPTIIFI 270 (424)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHHhccch---------HHHhcchHHHhhhhcchH-HHHHHHHHHhhccCCeEEEE
Confidence 34455589999999999999999999765321 111110 0000000111 11223445553 379999
Q ss_pred cccccCC-----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC
Q 003637 550 DEFDKMS-----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS 618 (806)
Q Consensus 550 DEidkm~-----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls 618 (806)
||+|.+. .+.|..++|.+.|- .| .+-+.++.||||+|... -|.|+|++
T Consensus 271 DElDAIGtKRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlR 329 (424)
T KOG0652|consen 271 DELDAIGTKRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLR 329 (424)
T ss_pred echhhhccccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhh
Confidence 9999763 34678899999872 12 23467799999999543 12233332
Q ss_pred --cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Q 003637 619 --RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 619 --RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
|.|-- +-+..|+++... +|++.|.... ++.+.+. .+.|. |..
T Consensus 330 SGRLDRK-IEfP~Pne~aRa----rIlQIHsRKM----------------------nv~~DvN---feELa------RsT 373 (424)
T KOG0652|consen 330 SGRLDRK-IEFPHPNEEARA----RILQIHSRKM----------------------NVSDDVN---FEELA------RST 373 (424)
T ss_pred ccccccc-ccCCCCChHHHH----HHHHHhhhhc----------------------CCCCCCC---HHHHh------hcc
Confidence 33322 222334443332 2344443322 1222121 12222 111
Q ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 003637 697 GNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLE 746 (806)
Q Consensus 697 ~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~ 746 (806)
..+. -.|+.++.-.|-.+|.-+....|+-+|+.++|.-++
T Consensus 374 ddFN----------GAQcKAVcVEAGMiALRr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 374 DDFN----------GAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred cccC----------chhheeeehhhhHHHHhcccccccHHHHHHHHHHHH
Confidence 2222 367777777777788878889999999999885543
No 159
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.6e-09 Score=116.77 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=83.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcc--cccccccccc---CCceeeccccccC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGET--VLESGALVLS---DRGICCIDEFDKM 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~--~le~Gal~lA---d~GIl~IDEidkm 555 (806)
.|||.||||||||.||++++..+.- ++..+..+.++..- .|+. .++ ..|..| ...|+||||||.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isApeivSGv--SGESEkkiR-elF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAPEIVSGV--SGESEKKIR-ELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecchhhhccc--CcccHHHHH-HHHHHHhccCCeEEEeeccccc
Confidence 7999999999999999999999944 44444444332211 2221 111 112222 3479999999999
Q ss_pred CHHHH-----------HHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchh
Q 003637 556 SESAR-----------SMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDL 622 (806)
Q Consensus 556 ~~~~~-----------~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDl 622 (806)
.+... +.|+..|++- +...+....+.||||+|.... |.++|.+ |||-
T Consensus 295 ~pkRe~aqreMErRiVaQLlt~mD~l-------~~~~~~g~~VlVIgATnRPDs-------------lDpaLRRaGRFdr 354 (802)
T KOG0733|consen 295 TPKREEAQREMERRIVAQLLTSMDEL-------SNEKTKGDPVLVIGATNRPDS-------------LDPALRRAGRFDR 354 (802)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhcc-------cccccCCCCeEEEecCCCCcc-------------cCHHHhccccccc
Confidence 87643 3344444431 122234567999999996542 3355544 7764
Q ss_pred hhhhccCCChHHHHHHHHHHHH
Q 003637 623 IYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 623 i~il~d~~~~~~d~~la~~il~ 644 (806)
- |.+..|++....+|.+.+.+
T Consensus 355 E-I~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 355 E-ICLGVPSETAREEILRIICR 375 (802)
T ss_pred e-eeecCCchHHHHHHHHHHHh
Confidence 4 55677888888888777765
No 160
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.87 E-value=3.5e-08 Score=108.12 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=88.8
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEE-ECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILL-VGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK 525 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLL-vG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k 525 (806)
+++|++.++..+.-.+-.+. . .|++| +||||+|||++++++++.....++. +++.. .+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~---~---------~~~lll~G~~G~GKT~la~~l~~~~~~~~~~-------i~~~~--~~ 80 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR---I---------PNMLLHSPSPGTGKTTVAKALCNEVGAEVLF-------VNGSD--CR 80 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC---C---------CeEEEeeCcCCCCHHHHHHHHHHHhCccceE-------eccCc--cc
Confidence 34688888877664443331 1 14555 8999999999999999876432211 11110 00
Q ss_pred CCCCCccccc-cccc-cccCCceeeccccccC-CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCC
Q 003637 526 DPETGETVLE-SGAL-VLSDRGICCIDEFDKM-SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNP 602 (806)
Q Consensus 526 ~~~~ge~~le-~Gal-~lAd~GIl~IDEidkm-~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~ 602 (806)
.....+...+ .... ..+...+++|||++.+ ..+.+..|...|++. +..+.+|.++|..
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~------ 141 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNK------ 141 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCCh------
Confidence 0000000000 0000 1245689999999999 677788888888862 2456788888832
Q ss_pred CCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 603 RLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 603 ~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
-.+++++.+||..+ .+..|+.+....++..++.
T Consensus 142 -------~~l~~~l~sR~~~i--~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 142 -------NGIIEPLRSRCRVI--DFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred -------hhchHHHHhhceEE--EeCCCCHHHHHHHHHHHHH
Confidence 24568899999643 4456666665556555443
No 161
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.5e-09 Score=111.68 Aligned_cols=140 Identities=20% Similarity=0.328 Sum_probs=88.0
Q ss_pred CCceeeccccccCCH------------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccc
Q 003637 543 DRGICCIDEFDKMSE------------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENI 610 (806)
Q Consensus 543 d~GIl~IDEidkm~~------------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i 610 (806)
+.||+|||||||+.. ..|.-|+...|--+|+ +|-|...+-. .-+|||. .|. +.+.-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~-TKyG~VkTdH--ILFIasG-----AFh----~sKPS 317 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVS-TKYGPVKTDH--ILFIASG-----AFH----VAKPS 317 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceee-ccccccccce--EEEEecC-----cee----cCChh
Confidence 469999999999743 2466788888766665 4666554422 4555542 332 22356
Q ss_pred cCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHH
Q 003637 611 HLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK-HIHPKLSDEAAEELTRG 689 (806)
Q Consensus 611 ~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~-~~~p~ls~ea~~~L~~~ 689 (806)
+|-|.|.-||.+-+-+ +.-+.+.-.. ||.. -...++++|.+.-+. .+...|+++|.+.|.+.
T Consensus 318 DLiPELQGRfPIRVEL-~~Lt~~Df~r----ILte------------p~~sLikQY~aLlkTE~v~l~FtddaI~~iAei 380 (444)
T COG1220 318 DLIPELQGRFPIRVEL-DALTKEDFER----ILTE------------PKASLIKQYKALLKTEGVELEFTDDAIKRIAEI 380 (444)
T ss_pred hcChhhcCCCceEEEc-ccCCHHHHHH----HHcC------------cchHHHHHHHHHHhhcCeeEEecHHHHHHHHHH
Confidence 7778899999766433 3333222222 2210 123578888887765 33447999999999998
Q ss_pred HHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 690 YVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 690 y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
..++.... -.|.+|.|..+++.
T Consensus 381 A~~vN~~~---------ENIGARRLhTvlEr 402 (444)
T COG1220 381 AYQVNEKT---------ENIGARRLHTVLER 402 (444)
T ss_pred HHHhcccc---------cchhHHHHHHHHHH
Confidence 66654322 34778999888754
No 162
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=5.6e-08 Score=114.96 Aligned_cols=173 Identities=15% Similarity=0.205 Sum_probs=107.6
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec-cCCCc-----------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGKGS----------- 514 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~~~----------- 514 (806)
+|+||+.+++.|.-.+-.+. .+ +.+||+||+|+|||++|+.+++.+.=...+ .+.+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~---l~--------hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK---LA--------HAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC---CC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 56799999988876665542 11 137999999999999999999987311000 00000
Q ss_pred -ccccceeeeecCCC--CCccccc-----cc-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 515 -SAVGLTAYVTKDPE--TGETVLE-----SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 515 -~~~glta~~~k~~~--~ge~~le-----~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
...++... +.. .+.-.++ .. .-..++..|++|||++.|+.+.+++|+..||+- +.
T Consensus 87 ~~~~n~~~l---d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~ 150 (614)
T PRK14971 87 QRSYNIHEL---DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PS 150 (614)
T ss_pred CCCCceEEe---cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CC
Confidence 00011000 100 0000010 00 012356679999999999999999999999972 23
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHH
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTA 665 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~ 665 (806)
.+.+|.+++. .-.|.++|.||+.++ ....++.+.+.+
T Consensus 151 ~tifIL~tt~-------------~~kIl~tI~SRc~iv------------------------------~f~~ls~~ei~~ 187 (614)
T PRK14971 151 YAIFILATTE-------------KHKILPTILSRCQIF------------------------------DFNRIQVADIVN 187 (614)
T ss_pred CeEEEEEeCC-------------chhchHHHHhhhhee------------------------------ecCCCCHHHHHH
Confidence 3445555541 234568889998554 445677777887
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH
Q 003637 666 YVSYARKHIHPKLSDEAAEELTRG 689 (806)
Q Consensus 666 yi~~ar~~~~p~ls~ea~~~L~~~ 689 (806)
++...-+.....++++++++|.+.
T Consensus 188 ~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 188 HLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Confidence 777655444556888888888765
No 163
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.85 E-value=5e-08 Score=110.27 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=124.2
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC------CeeccCCCccc-c
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR------GIYTSGKGSSA-V 517 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr------~~~t~g~~~~~-~ 517 (806)
-+.++|++.....|...|..+... ....+++|+|+||||||++++.+.+.+.. -+|........ .
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 344667777666666555332110 01127999999999999999999987632 12222211100 0
Q ss_pred c----ce-eeee-cCCCCCcccc----cc--cccccc-CCceeeccccccCC----HHHHHHHHHHHhhcEEEEeeccee
Q 003637 518 G----LT-AYVT-KDPETGETVL----ES--GALVLS-DRGICCIDEFDKMS----ESARSMLHEVMEQQTVSIAKAGII 580 (806)
Q Consensus 518 g----lt-a~~~-k~~~~ge~~l----e~--Gal~lA-d~GIl~IDEidkm~----~~~~~~L~e~Me~q~isi~kag~~ 580 (806)
. +. .... ..+..+ +.. +. ..+... ..-+++|||+|.+. .+....|++++++.
T Consensus 101 ~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~---------- 169 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSG-LSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY---------- 169 (394)
T ss_pred HHHHHHHHHhcCCCCCCCC-CCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------
Confidence 0 00 0000 000011 000 00 001101 12478999999986 22333444444331
Q ss_pred eeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCH
Q 003637 581 ASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDL 660 (806)
Q Consensus 581 ~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~ 660 (806)
-..++++|+++|+..-. ..+.+.+.+||.-..+.+ ++++.
T Consensus 170 --~~~~v~vI~i~~~~~~~----------~~l~~~~~s~~~~~~i~f----------------------------~py~~ 209 (394)
T PRK00411 170 --PGARIGVIGISSDLTFL----------YILDPRVKSVFRPEEIYF----------------------------PPYTA 209 (394)
T ss_pred --CCCeEEEEEEECCcchh----------hhcCHHHHhcCCcceeec----------------------------CCCCH
Confidence 01257789998854311 113344445553222222 33444
Q ss_pred HHHHHHHHHH-HhcCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 003637 661 ATLTAYVSYA-RKHIH-PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 738 (806)
Q Consensus 661 ~~Lk~yi~~a-r~~~~-p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv 738 (806)
+.+..++..- +.... ..+++++.+.+.+.... ..|+ +|.+..+++.|...|.-+.+..|+.+|+
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~------~~Gd--------~r~a~~ll~~a~~~a~~~~~~~I~~~~v 275 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR------EHGD--------ARVAIDLLRRAGLIAEREGSRKVTEEDV 275 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH------hcCc--------HHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 4444443321 11122 25889999988876422 1122 7888899998888888888899999999
Q ss_pred HHHHHHHHHHH
Q 003637 739 EEAFRLLEVAM 749 (806)
Q Consensus 739 ~~ai~l~~~sl 749 (806)
..|+..+..+.
T Consensus 276 ~~a~~~~~~~~ 286 (394)
T PRK00411 276 RKAYEKSEIVH 286 (394)
T ss_pred HHHHHHHHHHH
Confidence 99998775443
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.84 E-value=2.6e-08 Score=111.66 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=91.7
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe-e------ccCCCcccccc
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI-Y------TSGKGSSAVGL 519 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~-~------t~g~~~~~~gl 519 (806)
.+++-++....++..|..+ -|++|+|+||||||++|+.++..+.... + +-+...+...+
T Consensus 176 d~~i~e~~le~l~~~L~~~--------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHH
Confidence 4556666666666555543 1999999999999999999998874210 0 00000000000
Q ss_pred eeeeecCCCCCccccccccc----ccc-----CCceeeccccccCCHHH-HHHHHHHHhhc------EEEEe--e-ccee
Q 003637 520 TAYVTKDPETGETVLESGAL----VLS-----DRGICCIDEFDKMSESA-RSMLHEVMEQQ------TVSIA--K-AGII 580 (806)
Q Consensus 520 ta~~~k~~~~ge~~le~Gal----~lA-----d~GIl~IDEidkm~~~~-~~~L~e~Me~q------~isi~--k-ag~~ 580 (806)
-. .-.+....+....|.+ ..| .+.+++|||+++.+.+. ...|+.+||.+ .+.+. . .+..
T Consensus 242 I~--G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 242 IQ--GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred hc--ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 00 0001112233344432 112 34699999999999654 67788888853 12211 1 1234
Q ss_pred eeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhh
Q 003637 581 ASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL 625 (806)
Q Consensus 581 ~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~i 625 (806)
..++.++.||||+|..... -..+..+|++||..+-+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs---------~~~lD~AlrRRF~fi~i 355 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS---------LAVVDYALRRRFSFIDI 355 (459)
T ss_pred ccCCCCeEEEEecCccccc---------hhhccHHHHhhhheEEe
Confidence 6788999999999976521 12477999999977633
No 165
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.83 E-value=6.1e-09 Score=98.94 Aligned_cols=140 Identities=22% Similarity=0.163 Sum_probs=84.4
Q ss_pred chhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCC
Q 003637 450 ELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPET 529 (806)
Q Consensus 450 G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ 529 (806)
|++.+...+...+... ...+++++|+||+|||++++.+++.+... +.....+.+..........
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~ 65 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRP----GAPFLYLNASDLLEGLVVA 65 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcC----CCCeEEEehhhhhhhhHHH
Confidence 4555666665544432 11389999999999999999999987421 1111111111110000000
Q ss_pred C--c---cccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCC
Q 003637 530 G--E---TVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRL 604 (806)
Q Consensus 530 g--e---~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~ 604 (806)
. . .............++++|||++.+.......+++.|++..... ..+.++.+|+++|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~------ 132 (151)
T cd00009 66 ELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------ 132 (151)
T ss_pred HHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc------
Confidence 0 0 0011122234467899999999998888889999998754321 23567899999996652
Q ss_pred cccccccCCccccCcchhh
Q 003637 605 SVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 605 ~~~~~i~lp~~LlsRFDli 623 (806)
..+++.+.+||+..
T Consensus 133 -----~~~~~~~~~r~~~~ 146 (151)
T cd00009 133 -----GDLDRALYDRLDIR 146 (151)
T ss_pred -----CCcChhHHhhhccE
Confidence 23456777888744
No 166
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.82 E-value=1.2e-08 Score=109.08 Aligned_cols=208 Identities=19% Similarity=0.257 Sum_probs=118.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCC-CcccccceeeeecCCCCCcccccccccc---ccCCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK-GSSAVGLTAYVTKDPETGETVLESGALV---LSDRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~-~~~~~glta~~~k~~~~ge~~le~Gal~---lAd~GIl~IDEidkm~ 556 (806)
|+||+||+|||||.+++.+-+..+...|.... .+++ ..++.....-..+...-..|... ....-|+|||+++.-.
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~-~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSA-QTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-T-THHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccC-CCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCC
Confidence 99999999999999999988776654332110 0100 00000000000000111112111 1233589999998654
Q ss_pred HH------HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCC
Q 003637 557 ES------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKA 630 (806)
Q Consensus 557 ~~------~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~ 630 (806)
++ ..+.|.+.|+++-+.-.+......+ .++.++||+||..|+ ..+++.+++.|-++ ..+.|
T Consensus 114 ~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr----------~~is~R~~r~f~i~--~~~~p 180 (272)
T PF12775_consen 114 PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGR----------NPISPRFLRHFNIL--NIPYP 180 (272)
T ss_dssp --TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEEEE--E----
T ss_pred CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCC----------CCCChHHhhheEEE--EecCC
Confidence 33 2477888899887763322222233 358899999997776 23567888888544 45788
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 003637 631 DEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITAT 710 (806)
Q Consensus 631 ~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it 710 (806)
+.+....|...++..+..... +.. .+ ..+.+...+...+.|..++..- -|...+..+.++
T Consensus 181 ~~~sl~~If~~il~~~l~~~~-----------------f~~-~v-~~~~~~lv~ati~ly~~i~~~~-~ptp~k~HY~Fn 240 (272)
T PF12775_consen 181 SDESLNTIFSSILQSHLKNGG-----------------FPE-DV-QKLADKLVQATIELYQKIRQQF-LPTPSKPHYTFN 240 (272)
T ss_dssp TCCHHHHHHHHHHHHHTCHTT-----------------SSG-GG-CCCHHHHHHHHHHHHHHHHHHS--TTTTCTTTTSH
T ss_pred ChHHHHHHHHHHHhhhcccCC-----------------CCh-HH-HHHHHHHHHHHHHHHHhhhccc-CCCCccceeecc
Confidence 888888898888876643211 000 01 1345667777888898888641 122234567789
Q ss_pred HHHHHHHHHHHH
Q 003637 711 PRQIESLIRLSE 722 (806)
Q Consensus 711 ~R~Leslirla~ 722 (806)
+|.+..+++-..
T Consensus 241 lRDlsrv~qGil 252 (272)
T PF12775_consen 241 LRDLSRVFQGIL 252 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 167
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.81 E-value=1.1e-07 Score=106.25 Aligned_cols=237 Identities=20% Similarity=0.184 Sum_probs=124.6
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC----------CeeccCCCcc
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR----------GIYTSGKGSS 515 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr----------~~~t~g~~~~ 515 (806)
+.++|++...+.|...|...... ....+++|+|+||||||++++++.+.+.. .+|.......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 34778887776666544321100 01128999999999999999999876531 1121111000
Q ss_pred c-c----cceeeee----cCCCCCc---cccc--ccccc-ccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeeccee
Q 003637 516 A-V----GLTAYVT----KDPETGE---TVLE--SGALV-LSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGII 580 (806)
Q Consensus 516 ~-~----glta~~~----k~~~~ge---~~le--~Gal~-lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~ 580 (806)
. . .+..... +.+..+. ..++ ...+. .....+++|||+|.+....+..|.+.+.-....
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~------- 159 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG------- 159 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc-------
Confidence 0 0 0000000 0000000 0000 00111 112358999999999533334444443211000
Q ss_pred eeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCH
Q 003637 581 ASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDL 660 (806)
Q Consensus 581 ~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~ 660 (806)
..-+..+.+|+++|...- .-.+.+.+.+||.-..+.+ ++++.
T Consensus 160 ~~~~~~v~lI~i~n~~~~----------~~~l~~~~~s~~~~~~i~f----------------------------~p~~~ 201 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKF----------RENLDPRVKSSLCEEEIIF----------------------------PPYDA 201 (365)
T ss_pred CCCCCeEEEEEEECCcch----------HhhcCHHHhccCCcceeee----------------------------CCCCH
Confidence 001246788999885321 1134456667774222223 33444
Q ss_pred HHHHHHHHHHHh-cCC-CCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 003637 661 ATLTAYVSYARK-HIH-PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 738 (806)
Q Consensus 661 ~~Lk~yi~~ar~-~~~-p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv 738 (806)
+++..++...-. ... ..+++++.+++.+.... . .|+ +|....+++.|...|..+....|+.+||
T Consensus 202 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~--~----~Gd--------~R~al~~l~~a~~~a~~~~~~~it~~~v 267 (365)
T TIGR02928 202 EELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ--E----HGD--------ARKAIDLLRVAGEIAEREGAERVTEDHV 267 (365)
T ss_pred HHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH--h----cCC--------HHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 444444433221 112 24788888877654321 1 122 7999999999888888777889999999
Q ss_pred HHHHHHHHHHH
Q 003637 739 EEAFRLLEVAM 749 (806)
Q Consensus 739 ~~ai~l~~~sl 749 (806)
..|+..+..+.
T Consensus 268 ~~a~~~~~~~~ 278 (365)
T TIGR02928 268 EKAQEKIEKDR 278 (365)
T ss_pred HHHHHHHHHHH
Confidence 99988775443
No 168
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.80 E-value=8.6e-09 Score=111.75 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=82.9
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccc-----ccccc--------CCce
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESG-----ALVLS--------DRGI 546 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~G-----al~lA--------d~GI 546 (806)
.-++|+||||||||.+++++++.+.- .+..+....+. +.|.-+++ .+..| ...|
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~------sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELE------SENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhh------cCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 37999999999999999999999833 33222222221 22333322 12212 3479
Q ss_pred eeccccccCCHH---------HH---HHHHHHHhhc-EEEEeecce--eeeecCceEEEEecCCCCCCCCCCCccccccc
Q 003637 547 CCIDEFDKMSES---------AR---SMLHEVMEQQ-TVSIAKAGI--IASLNARTSVLACANPSGSRYNPRLSVIENIH 611 (806)
Q Consensus 547 l~IDEidkm~~~---------~~---~~L~e~Me~q-~isi~kag~--~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~ 611 (806)
+||||||.+-.. .| ..|+..|+.- .++ -.|. ...-..++.||+|+|. .-.
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~--l~G~w~~~~~~~~V~VIaTTNr-------------pd~ 280 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVS--LGGDWREKEEIPRVPIIVTGND-------------FST 280 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccc--ccccccccccCCCceEEEeCCC-------------ccc
Confidence 999999976432 12 2455555531 111 1121 1223557899999993 345
Q ss_pred CCccccC--cchhhhhhccCCChHHHHHHHHHHHH
Q 003637 612 LPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 612 lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~ 644 (806)
|+++|++ |||..+. .|+.+....|.+.+++
T Consensus 281 LDpALlRpGRfDk~i~---lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 281 LYAPLIRDGRMEKFYW---APTREDRIGVVHGIFR 312 (413)
T ss_pred CCHhHcCCCCCCceeC---CCCHHHHHHHHHHHhc
Confidence 7799999 9998753 5888888888776654
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.78 E-value=2.1e-09 Score=101.44 Aligned_cols=112 Identities=26% Similarity=0.344 Sum_probs=70.4
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccc---c-CCceeeccccccCCH
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVL---S-DRGICCIDEFDKMSE 557 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~l---A-d~GIl~IDEidkm~~ 557 (806)
|||+||||||||++++.+++.+...++ .+.+...........+..+. ..+.. . ...|+||||+|.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~-------~i~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI-------EIDGSELISSYAGDSEQKIR-DFFKKAKKSAKPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE-------EEETTHHHTSSTTHHHHHHH-HHHHHHHHTSTSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc-------cccccccccccccccccccc-cccccccccccceeeeeccchhccc
Confidence 799999999999999999999854322 12221111000000000110 11111 1 258999999999988
Q ss_pred HH-----------HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCcccc-Ccchhhh
Q 003637 558 SA-----------RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLL-SRFDLIY 624 (806)
Q Consensus 558 ~~-----------~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Ll-sRFDli~ 624 (806)
.. ...|...|+...- .+.++.+|+++|. .-.++++++ +|||..+
T Consensus 73 ~~~~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~-------------~~~i~~~l~~~rf~~~i 128 (132)
T PF00004_consen 73 KSQPSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNS-------------PDKIDPALLRSRFDRRI 128 (132)
T ss_dssp HCSTSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESS-------------GGGSCHHHHSTTSEEEE
T ss_pred ccccccccccccccceeeeccccccc----------ccccceeEEeeCC-------------hhhCCHhHHhCCCcEEE
Confidence 76 6777777775321 1356899999993 345778888 9998764
No 170
>PRK06620 hypothetical protein; Validated
Probab=98.78 E-value=1.1e-07 Score=98.40 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=95.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
+++|+||||+|||+|++++++... ..|.+.. ...+ . ......++||||++.+.....
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~~~---------------~~~~-----~--~~~~~d~lliDdi~~~~~~~l 102 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSN-AYIIKDI---------------FFNE-----E--ILEKYNAFIIEDIENWQEPAL 102 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccC-CEEcchh---------------hhch-----h--HHhcCCEEEEeccccchHHHH
Confidence 699999999999999999887652 2221100 0000 0 112335899999997643222
Q ss_pred HHHHH-HHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh-hhhccCCChHHHHHH
Q 003637 561 SMLHE-VMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI-YLILDKADEQTDRRL 638 (806)
Q Consensus 561 ~~L~e-~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli-~il~d~~~~~~d~~l 638 (806)
-.++. ++|.|. ..++++..+.. .+.+ +.|.||+.-. .+-...++.+
T Consensus 103 f~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~----- 150 (214)
T PRK06620 103 LHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDE----- 150 (214)
T ss_pred HHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHH-----
Confidence 22222 224432 22455443333 2345 6788998622 2233444433
Q ss_pred HHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHH
Q 003637 639 AKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLI 718 (806)
Q Consensus 639 a~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Lesli 718 (806)
.+..++..+.+...-.+++++.++|.+.. ++ ++|.+++++
T Consensus 151 -----------------------~~~~~l~k~~~~~~l~l~~ev~~~L~~~~---------~~--------d~r~l~~~l 190 (214)
T PRK06620 151 -----------------------LIKILIFKHFSISSVTISRQIIDFLLVNL---------PR--------EYSKIIEIL 190 (214)
T ss_pred -----------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHc---------cC--------CHHHHHHHH
Confidence 33333322222233469999999999752 22 389999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 719 RLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 719 rla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
....+.+... ...||...+++++
T Consensus 191 ~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 191 ENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHh
Confidence 8866555543 3468888887765
No 171
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.9e-08 Score=102.06 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=60.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccccc---CCceeeccccccCC-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS---DRGICCIDEFDKMS- 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~- 556 (806)
.|||+||||||||+|++++++....+ +..+.-+..+.+--..|-...+ ..+-+| ...|+||||+|.+.
T Consensus 191 gvllygppg~gktml~kava~~t~a~-------firvvgsefvqkylgegprmvr-dvfrlakenapsiifideidaiat 262 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGSEFVQKYLGEGPRMVR-DVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccHHHHHHHhccCcHHHH-HHHHHHhccCCcEEEeehhhhHhh
Confidence 69999999999999999999865322 2222222222221111111111 123333 23799999999753
Q ss_pred ----------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 557 ----------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 557 ----------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
.+.|..|+|.+.| -.|... .+++.+|.|+|..
T Consensus 263 krfdaqtgadrevqril~ellnq------mdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 263 KRFDAQTGADREVQRILIELLNQ------MDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred hhccccccccHHHHHHHHHHHHh------ccCcCc--ccceEEEEecCcc
Confidence 4567888888876 223333 3457799999964
No 172
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.1e-08 Score=105.98 Aligned_cols=108 Identities=24% Similarity=0.346 Sum_probs=79.2
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcc---cc-----c-cccccccCCceeecc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGET---VL-----E-SGALVLSDRGICCID 550 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~---~l-----e-~Gal~lAd~GIl~ID 550 (806)
.||||+||+|+|||.|++.+|+.+ +.++....||....-. +-|+- ++ + .+.+..|..||+|||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-------dVPfaIcDcTtLTQAG-YVGeDVEsvi~KLl~~A~~nVekAQqGIVflD 298 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-------DVPFAICDCTTLTQAG-YVGEDVESVIQKLLQEAEYNVEKAQQGIVFLD 298 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-------CCCeEEecccchhhcc-cccccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence 499999999999999999999999 5566677777553222 12221 11 1 245667889999999
Q ss_pred ccccCC--------------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 551 EFDKMS--------------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 551 Eidkm~--------------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
|+||+. +..|.+|+..+|--.|.+..-|.......+...|-|+|-
T Consensus 299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnI 357 (564)
T KOG0745|consen 299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNI 357 (564)
T ss_pred hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccce
Confidence 999986 347899999999888888655655555666666666664
No 173
>PRK04195 replication factor C large subunit; Provisional
Probab=98.77 E-value=5.8e-08 Score=112.57 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=58.6
Q ss_pred ccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCC
Q 003637 448 IWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDP 527 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~ 527 (806)
++|++.++..+.-.+-.... | +...++||+||||||||++|+++++.+...+. .+++...+..
T Consensus 16 lvg~~~~~~~l~~~l~~~~~-----g---~~~~~lLL~GppG~GKTtla~ala~el~~~~i---------elnasd~r~~ 78 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLK-----G---KPKKALLLYGPPGVGKTSLAHALANDYGWEVI---------ELNASDQRTA 78 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhc-----C---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEE---------EEcccccccH
Confidence 46777777665533321110 0 00238999999999999999999998853321 1111100000
Q ss_pred C-CCcccc---ccccccccCCceeeccccccCCH----HHHHHHHHHHhh
Q 003637 528 E-TGETVL---ESGALVLSDRGICCIDEFDKMSE----SARSMLHEVMEQ 569 (806)
Q Consensus 528 ~-~ge~~l---e~Gal~lAd~GIl~IDEidkm~~----~~~~~L~e~Me~ 569 (806)
. -..... ....+.-....+++|||+|.|.. ....+|+..|+.
T Consensus 79 ~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 79 DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 0 000000 00111112467999999999976 446777787764
No 174
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.1e-07 Score=108.45 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=140.9
Q ss_pred HHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc--
Q 003637 440 LTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV-- 517 (806)
Q Consensus 440 l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~-- 517 (806)
..-..+.+++|++.|.+.|--++..+. -.+--||.|+-|||||++||.+++.+.=.--+.+.+....
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 334445567899999999986666541 1235799999999999999999998742210222222111
Q ss_pred ------c-ceeeeecCC--CCCcc----ccc-cc-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeee
Q 003637 518 ------G-LTAYVTKDP--ETGET----VLE-SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIAS 582 (806)
Q Consensus 518 ------g-lta~~~k~~--~~ge~----~le-~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~ 582 (806)
| ..-.+.-|. .+|-- ..+ .. +-+.+...|.+|||++.|+....++||..+|+-
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP------------ 146 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP------------ 146 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC------------
Confidence 0 000000010 01100 000 00 112344579999999999999999999999973
Q ss_pred ecCceE-EEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHH
Q 003637 583 LNARTS-VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLA 661 (806)
Q Consensus 583 l~~~~s-iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~ 661 (806)
|..+. |+||++ .-.+|..++||+-- .....++.+
T Consensus 147 -P~hV~FIlATTe--------------~~Kip~TIlSRcq~------------------------------f~fkri~~~ 181 (515)
T COG2812 147 -PSHVKFILATTE--------------PQKIPNTILSRCQR------------------------------FDFKRLDLE 181 (515)
T ss_pred -ccCeEEEEecCC--------------cCcCchhhhhcccc------------------------------ccccCCCHH
Confidence 23333 555554 55789999999832 245678888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 662 TLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 662 ~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
.+.+++.+.-......+.++|+..|.+.. .| +.|...+++.-+.+... ..|+.++|...
T Consensus 182 ~I~~~L~~i~~~E~I~~e~~aL~~ia~~a---------~G--------s~RDalslLDq~i~~~~----~~It~~~v~~~ 240 (515)
T COG2812 182 EIAKHLAAILDKEGINIEEDALSLIARAA---------EG--------SLRDALSLLDQAIAFGE----GEITLESVRDM 240 (515)
T ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHHc---------CC--------ChhhHHHHHHHHHHccC----CcccHHHHHHH
Confidence 88888888777677788999999988652 12 37999999877665542 67888888776
Q ss_pred HHHHH
Q 003637 742 FRLLE 746 (806)
Q Consensus 742 i~l~~ 746 (806)
+.++.
T Consensus 241 lG~~~ 245 (515)
T COG2812 241 LGLTD 245 (515)
T ss_pred hCCCC
Confidence 54443
No 175
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=1e-07 Score=99.70 Aligned_cols=180 Identities=19% Similarity=0.194 Sum_probs=99.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC----CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~ 556 (806)
.++|+|+||||||+|++++++.+.+ ..|.+- ... +. .....++ .+...-++||||++.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~--------~~~---~~-~~~~~~~----~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL--------SKS---QY-FSPAVLE----NLEQQDLVCLDDLQAVI 104 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH--------HHh---hh-hhHHHHh----hcccCCEEEEeChhhhc
Confidence 5799999999999999999987532 222111 000 00 0000111 12234699999999875
Q ss_pred --HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch--hhhhhccCCCh
Q 003637 557 --ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD--LIYLILDKADE 632 (806)
Q Consensus 557 --~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD--li~il~d~~~~ 632 (806)
...+..|+..++...- .....++.|+|.....+.. +-+.|.+|+- ++ +-+..+
T Consensus 105 ~~~~~~~~l~~l~n~~~~-----------~~~~illits~~~p~~l~~---------~~~~L~sRl~~g~~-~~l~~p-- 161 (229)
T PRK06893 105 GNEEWELAIFDLFNRIKE-----------QGKTLLLISADCSPHALSI---------KLPDLASRLTWGEI-YQLNDL-- 161 (229)
T ss_pred CChHHHHHHHHHHHHHHH-----------cCCcEEEEeCCCChHHccc---------cchhHHHHHhcCCe-eeCCCC--
Confidence 3345567777764210 0112345555533322111 1155667763 22 123333
Q ss_pred HHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHH
Q 003637 633 QTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPR 712 (806)
Q Consensus 633 ~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R 712 (806)
+.+...+++........-.+++++.++|.+.. ++ ++|
T Consensus 162 --------------------------d~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~---------~~--------d~r 198 (229)
T PRK06893 162 --------------------------TDEQKIIVLQRNAYQRGIELSDEVANFLLKRL---------DR--------DMH 198 (229)
T ss_pred --------------------------CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---------cC--------CHH
Confidence 34444444432222234569999999998752 22 279
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 713 QIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 713 ~Leslirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
.|++++.... .+.+.-...||...+++++.
T Consensus 199 ~l~~~l~~l~-~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 199 TLFDALDLLD-KASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHH-HHHHhcCCCCCHHHHHHHhc
Confidence 9998887654 34444345699888888764
No 176
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.72 E-value=6.5e-08 Score=101.52 Aligned_cols=183 Identities=20% Similarity=0.188 Sum_probs=98.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCH--H
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSE--S 558 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~--~ 558 (806)
+++|+||||+|||+|++++++.+... |....-..+... .....+ ..+ .+ ..--++||||++.+.. .
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~----~~~v~y~~~~~~---~~~~~~-~~~--~~--~~~dlliiDdi~~~~~~~~ 114 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQR----GRAVGYVPLDKR---AWFVPE-VLE--GM--EQLSLVCIDNIECIAGDEL 114 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEEHHHH---hhhhHH-HHH--Hh--hhCCEEEEeChhhhcCCHH
Confidence 89999999999999999988865321 110000000000 000000 000 01 1124799999999863 3
Q ss_pred HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch--hhhhhccCCChHHHH
Q 003637 559 ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD--LIYLILDKADEQTDR 636 (806)
Q Consensus 559 ~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD--li~il~d~~~~~~d~ 636 (806)
.+..|..++....- +.++.+|.|+|.....+ -.+.+.|.||+. ++ +-+.
T Consensus 115 ~~~~lf~l~n~~~e-----------~g~~~li~ts~~~p~~l---------~~~~~~L~SRl~~g~~-~~l~-------- 165 (235)
T PRK08084 115 WEMAIFDLYNRILE-----------SGRTRLLITGDRPPRQL---------NLGLPDLASRLDWGQI-YKLQ-------- 165 (235)
T ss_pred HHHHHHHHHHHHHH-----------cCCCeEEEeCCCChHHc---------CcccHHHHHHHhCCce-eeec--------
Confidence 44455444432100 01223555555332221 123478889974 22 1222
Q ss_pred HHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHH
Q 003637 637 RLAKHIVSLHFENPENSEQGVLDLATLTAYVSY-ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIE 715 (806)
Q Consensus 637 ~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~-ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Le 715 (806)
+.+.+.+.+++.. +.. ..-.+++++.++|.+.+ ++ ++|.++
T Consensus 166 --------------------~~~~~~~~~~l~~~a~~-~~~~l~~~v~~~L~~~~---------~~--------d~r~l~ 207 (235)
T PRK08084 166 --------------------PLSDEEKLQALQLRARL-RGFELPEDVGRFLLKRL---------DR--------EMRTLF 207 (235)
T ss_pred --------------------CCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhh---------cC--------CHHHHH
Confidence 2333344444433 332 23569999999998753 22 389999
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 716 SLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 716 slirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
+++.... .+.+.....||.+.+++++.
T Consensus 208 ~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 208 MTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 9988754 33344456699888888764
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.70 E-value=5.4e-08 Score=118.49 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=77.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccc-cccccc---cCCceeeccccccC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLE-SGALVL---SDRGICCIDEFDKM 555 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le-~Gal~l---Ad~GIl~IDEidkm 555 (806)
-++||+||||||||++++++++.+....+ .+.......+ ..|+.... ...+.. ....|+||||+|.+
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~~i-------~i~~~~i~~~--~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l 283 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFI-------SINGPEIMSK--YYGESEERLREIFKEAEENAPSIIFIDEIDAI 283 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEE-------EEecHHHhcc--cccHHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 38999999999999999999998854432 1211111111 11111000 011111 12479999999887
Q ss_pred CH-----------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchh
Q 003637 556 SE-----------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDL 622 (806)
Q Consensus 556 ~~-----------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDl 622 (806)
.. ..+..|++.|+.-. -...+.||+|+|+.. .|++++.+ |||.
T Consensus 284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~ 339 (733)
T TIGR01243 284 APKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR 339 (733)
T ss_pred cccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE
Confidence 43 24566777776421 123577899999543 34566655 8976
Q ss_pred hhhhccCCChHHHHHHHHH
Q 003637 623 IYLILDKADEQTDRRLAKH 641 (806)
Q Consensus 623 i~il~d~~~~~~d~~la~~ 641 (806)
. +.+..|+.+....|.+.
T Consensus 340 ~-i~i~~P~~~~R~~Il~~ 357 (733)
T TIGR01243 340 E-IVIRVPDKRARKEILKV 357 (733)
T ss_pred E-EEeCCcCHHHHHHHHHH
Confidence 5 45677777777666663
No 178
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.1e-07 Score=96.57 Aligned_cols=100 Identities=23% Similarity=0.324 Sum_probs=62.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccC---CceeeccccccC--
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSD---RGICCIDEFDKM-- 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd---~GIl~IDEidkm-- 555 (806)
.|||+||||||||.||++++....-. +..+.-+..+.+--..|.... ...|+.|. ..|+|.||||.+
T Consensus 183 GvlLygppgtGktLlaraVahht~c~-------firvsgselvqk~igegsrmv-relfvmarehapsiifmdeidsigs 254 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCT-------FIRVSGSELVQKYIGEGSRMV-RELFVMAREHAPSIIFMDEIDSIGS 254 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceE-------EEEechHHHHHHHhhhhHHHH-HHHHHHHHhcCCceEeeeccccccc
Confidence 79999999999999999999865211 111111111111111111111 12344442 479999999987
Q ss_pred ---------CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 556 ---------SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 556 ---------~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
+.+.|..++|.+.| -.|..++- +..+|.|+|..
T Consensus 255 ~r~e~~~ggdsevqrtmlellnq------ldgfeatk--nikvimatnri 296 (404)
T KOG0728|consen 255 SRVESGSGGDSEVQRTMLELLNQ------LDGFEATK--NIKVIMATNRI 296 (404)
T ss_pred ccccCCCCccHHHHHHHHHHHHh------cccccccc--ceEEEEecccc
Confidence 45678899999987 23444443 46799999964
No 179
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.5e-08 Score=110.59 Aligned_cols=171 Identities=25% Similarity=0.280 Sum_probs=103.0
Q ss_pred cccchhhhHHHHh-hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec
Q 003637 447 NIWELDDVKKGLL-CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK 525 (806)
Q Consensus 447 ~I~G~e~vK~~il-l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k 525 (806)
.|-|.+++|+.+. ..+........-.|.+.... .+||.||||+|||+|+++||..+.-..| ..++.+|+. +
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~r-glLLfGPpgtGKtmL~~aiAsE~~atff----~iSassLts---K 225 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVR-GLLLFGPPGTGKTMLAKAIATESGATFF----NISASSLTS---K 225 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccccccc-hhheecCCCCchHHHHHHHHhhhcceEe----eccHHHhhh---h
Confidence 4568999998776 22222221111122222111 6999999999999999999998844322 122233332 2
Q ss_pred CCCCCcccccccccccc---CCceeeccccccCCH--------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecC
Q 003637 526 DPETGETVLESGALVLS---DRGICCIDEFDKMSE--------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACAN 594 (806)
Q Consensus 526 ~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~~--------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaN 594 (806)
.+..++..+++ .+..| .-+|+||||+|++-. ..+-...|++-| ..|....-+.++.|++|+|
T Consensus 226 ~~Ge~eK~vra-lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 226 YVGESEKLVRA-LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred ccChHHHHHHH-HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEecCC
Confidence 22222222221 22223 348999999997632 223334444433 2233344455899999999
Q ss_pred CCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhh
Q 003637 595 PSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLH 646 (806)
Q Consensus 595 p~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~ 646 (806)
. ...+..+.++|| .-+++...|+.+....+..+++..+
T Consensus 299 ~-------------P~e~Dea~~Rrf-~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 299 R-------------PWELDEAARRRF-VKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred C-------------chHHHHHHHHHh-hceeeecCCCHHHHHHHHHHHHHhC
Confidence 3 455668888899 5556688999999999988888743
No 180
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.67 E-value=2.8e-07 Score=111.73 Aligned_cols=130 Identities=23% Similarity=0.335 Sum_probs=96.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccccee---------eeecCCCCCcccccccccc--ccCCceeec
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTA---------YVTKDPETGETVLESGALV--LSDRGICCI 549 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta---------~~~k~~~~ge~~le~Gal~--lAd~GIl~I 549 (806)
++||.|.||+|||.|+.++|+..+ +-.+.++|+. +-.....+|++...-..+. +.+||.+++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG-------~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlL 1617 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTG-------KKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLL 1617 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhc-------CceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEe
Confidence 899999999999999999999984 4344444432 1111124577655433333 448899999
Q ss_pred cccccCCHHHHHHHHHHHhh-cEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhh
Q 003637 550 DEFDKMSESARSMLHEVMEQ-QTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY 624 (806)
Q Consensus 550 DEidkm~~~~~~~L~e~Me~-q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~ 624 (806)
||++-.+......|...++. +...|....++.....+++|.||.||...+- ..-.||..+++||-.++
T Consensus 1618 DEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qgg-------GRKgLPkSF~nRFsvV~ 1686 (4600)
T COG5271 1618 DEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGG-------GRKGLPKSFLNRFSVVK 1686 (4600)
T ss_pred ehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCC-------CcccCCHHHhhhhheEE
Confidence 99999999999999999987 4556666777888889999999999985331 13568999999997664
No 181
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.5e-07 Score=99.87 Aligned_cols=137 Identities=27% Similarity=0.328 Sum_probs=88.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC--eeccCC--CcccccceeeeecCCCCCccccccccccccCCc-eeeccccc--
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG--IYTSGK--GSSAVGLTAYVTKDPETGETVLESGALVLSDRG-ICCIDEFD-- 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~--~~t~g~--~~~~~glta~~~k~~~~ge~~le~Gal~lAd~G-Il~IDEid-- 553 (806)
||||+||||||||++|+-+++.+.-. +.|-|. +...-+.|.+- + -+ .|. ..+..| ++||||.|
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH-~-lF--DWa------kkS~rGLllFIDEADAF 455 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIH-K-LF--DWA------KKSRRGLLLFIDEADAF 455 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHH-H-HH--HHH------hhcccceEEEehhhHHH
Confidence 89999999999999999999988542 222111 11111222110 0 00 111 112233 68999997
Q ss_pred -------cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhh
Q 003637 554 -------KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLI 626 (806)
Q Consensus 554 -------km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il 626 (806)
.|++..+++|...+=. .|. -..++.++.|+|..+ .|..+.-+|+|-+ +-
T Consensus 456 LceRnktymSEaqRsaLNAlLfR-------TGd---qSrdivLvlAtNrpg-------------dlDsAV~DRide~-ve 511 (630)
T KOG0742|consen 456 LCERNKTYMSEAQRSALNALLFR-------TGD---QSRDIVLVLATNRPG-------------DLDSAVNDRIDEV-VE 511 (630)
T ss_pred HHHhchhhhcHHHHHHHHHHHHH-------hcc---cccceEEEeccCCcc-------------chhHHHHhhhhhe-ee
Confidence 4788888888776632 011 123577888888443 3446777999876 67
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCC
Q 003637 627 LDKADEQTDRRLAKHIVSLHFENPE 651 (806)
Q Consensus 627 ~d~~~~~~d~~la~~il~~~~~~~~ 651 (806)
++.|.+++...|....++.|...+.
T Consensus 512 FpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 512 FPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred cCCCChHHHHHHHHHHHHHHhcCcC
Confidence 7889999999999999988875544
No 182
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.6e-08 Score=104.90 Aligned_cols=133 Identities=29% Similarity=0.365 Sum_probs=80.4
Q ss_pred ccchhhhHHHHh---------hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccccc
Q 003637 448 IWELDDVKKGLL---------CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVG 518 (806)
Q Consensus 448 I~G~e~vK~~il---------l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~g 518 (806)
+-|.|..|.||- =+||.|.+ +.+-.|||+||||||||-||++++-.+.-..| .+.
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR---------~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFF-------SvS 198 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKR---------KPWRGILLYGPPGTGKSYLAKAVATEANSTFF-------SVS 198 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCC---------CcceeEEEeCCCCCcHHHHHHHHHhhcCCceE-------Eee
Confidence 458888888775 24444432 23458999999999999999999988852222 222
Q ss_pred ceeeeecCCCCCcccccc-----cccccc---CCceeeccccccCCH--------HHHHHHHHHHhh-cEEEEeecceee
Q 003637 519 LTAYVTKDPETGETVLES-----GALVLS---DRGICCIDEFDKMSE--------SARSMLHEVMEQ-QTVSIAKAGIIA 581 (806)
Q Consensus 519 lta~~~k~~~~ge~~le~-----Gal~lA---d~GIl~IDEidkm~~--------~~~~~L~e~Me~-q~isi~kag~~~ 581 (806)
-+..+. .|.-+. ..+.+| ...|+||||||.+.. ..|..=-|++-| |-| |
T Consensus 199 SSDLvS------KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV-----G--- 264 (439)
T KOG0739|consen 199 SSDLVS------KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV-----G--- 264 (439)
T ss_pred hHHHHH------HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc-----c---
Confidence 222222 243333 334444 347999999997732 222222233322 111 1
Q ss_pred eecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 582 SLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 582 ~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
.-+..+.|++|+|- ...|..++.+||+-.
T Consensus 265 ~d~~gvLVLgATNi-------------Pw~LDsAIRRRFekR 293 (439)
T KOG0739|consen 265 NDNDGVLVLGATNI-------------PWVLDSAIRRRFEKR 293 (439)
T ss_pred cCCCceEEEecCCC-------------chhHHHHHHHHhhcc
Confidence 12445889999993 455668888888754
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.6e-07 Score=109.44 Aligned_cols=211 Identities=19% Similarity=0.207 Sum_probs=142.0
Q ss_pred hcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec---cCCCcccccce
Q 003637 444 LAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT---SGKGSSAVGLT 520 (806)
Q Consensus 444 i~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t---~g~~~~~~glt 520 (806)
|-|- +|++....-++-.|.-.+.. |-+|+|+||+|||.++..+|.....+-.. .++-.....+.
T Consensus 169 lDPv-IGRd~EI~r~iqIL~RR~KN------------NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g 235 (786)
T COG0542 169 LDPV-IGRDEEIRRTIQILSRRTKN------------NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG 235 (786)
T ss_pred CCCC-cChHHHHHHHHHHHhccCCC------------CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence 4444 48887777666666655322 88999999999999999999887543111 11112222222
Q ss_pred eeeecCCCCCcccccc----ccccccCCceeeccccccCC---------HHHHHHHHHHHhhcEEEEeecceeeeecCce
Q 003637 521 AYVTKDPETGETVLES----GALVLSDRGICCIDEFDKMS---------ESARSMLHEVMEQQTVSIAKAGIIASLNART 587 (806)
Q Consensus 521 a~~~k~~~~ge~~le~----Gal~lAd~GIl~IDEidkm~---------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~ 587 (806)
+.+.-...-|+|.-+- ..+..+.+-|+||||++.+- -+.-+.|..+|..|++.
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-------------- 301 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-------------- 301 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE--------------
Confidence 2222222345443221 12333456799999998651 23456666777766654
Q ss_pred EEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHH
Q 003637 588 SVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYV 667 (806)
Q Consensus 588 siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi 667 (806)
.|+|+.-.+.| +.|.-.++|.+||--+ ..+.|+.+.-..|.+-+-..+ +.+..-.|+.+.|..-.
T Consensus 302 -~IGATT~~EYR--------k~iEKD~AL~RRFQ~V--~V~EPs~e~ti~ILrGlk~~y----E~hH~V~i~D~Al~aAv 366 (786)
T COG0542 302 -CIGATTLDEYR--------KYIEKDAALERRFQKV--LVDEPSVEDTIAILRGLKERY----EAHHGVRITDEALVAAV 366 (786)
T ss_pred -EEEeccHHHHH--------HHhhhchHHHhcCcee--eCCCCCHHHHHHHHHHHHHHH----HHccCceecHHHHHHHH
Confidence 88888876655 3566679999999655 678999888887777665433 33455688999999999
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHHHHHHhc
Q 003637 668 SYARKHIHP-KLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 668 ~~ar~~~~p-~ls~ea~~~L~~~y~~lR~~ 696 (806)
.++.+++.- .|+|.|+++|.+.-..+|-.
T Consensus 367 ~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 367 TLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred HHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 999988765 79999999999998877764
No 184
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.63 E-value=1.2e-07 Score=108.19 Aligned_cols=189 Identities=13% Similarity=0.204 Sum_probs=104.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC----CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~ 556 (806)
+++|+|+||+|||+|++++++.+.. .+|.+...+...-..+. + .+... .... ......+++|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l--~---~~~~~-~f~~-~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAI--R---SGEMQ-RFRQ-FYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHH--h---cchHH-HHHH-HcccCCEEEEcchhhhc
Confidence 7999999999999999999987632 23332211111000000 0 01000 0000 12244699999999985
Q ss_pred H--HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch--hhhhhccCCCh
Q 003637 557 E--SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD--LIYLILDKADE 632 (806)
Q Consensus 557 ~--~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD--li~il~d~~~~ 632 (806)
. ..+..|+..++...- ....+|.++|..... --.+.+.|.|||. ++ +-+..|+
T Consensus 216 ~k~~~qeelf~l~N~l~~------------~~k~IIlts~~~p~~---------l~~l~~rL~SR~~~Gl~-~~l~~pd- 272 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHT------------EGKLIVISSTCAPQD---------LKAMEERLISRFEWGIA-IPLHPLT- 272 (445)
T ss_pred CChhhHHHHHHHHHHHHH------------CCCcEEEecCCCHHH---------HhhhHHHHHhhhcCCeE-EecCCCC-
Confidence 4 456666666553210 112355555532211 1135578889985 22 2223333
Q ss_pred HHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHH
Q 003637 633 QTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPR 712 (806)
Q Consensus 633 ~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R 712 (806)
.+.+..|+....+.....+++++.++|...+ .++ +|
T Consensus 273 ---------------------------~e~r~~iL~~k~~~~~~~l~~evl~~la~~~---------~~d--------ir 308 (445)
T PRK12422 273 ---------------------------KEGLRSFLERKAEALSIRIEETALDFLIEAL---------SSN--------VK 308 (445)
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc---------CCC--------HH
Confidence 3344444433333344679999999988642 223 89
Q ss_pred HHHHHHHHH---HHHHHHhcCCCCCHhhHHHHHHH
Q 003637 713 QIESLIRLS---EALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 713 ~Leslirla---~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
+|+..+... .|.+.+.. ..++.+++.+++.-
T Consensus 309 ~L~g~l~~l~~~~a~~~~~~-~~i~~~~~~~~l~~ 342 (445)
T PRK12422 309 SLLHALTLLAKRVAYKKLSH-QLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 999888655 36666654 45788888877753
No 185
>PRK08727 hypothetical protein; Validated
Probab=98.62 E-value=5.1e-07 Score=94.69 Aligned_cols=182 Identities=19% Similarity=0.189 Sum_probs=103.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccc-cccCCceeeccccccCC--H
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGAL-VLSDRGICCIDEFDKMS--E 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal-~lAd~GIl~IDEidkm~--~ 557 (806)
.++|+|++|||||+|+++++..+.+. |....-+.+... .+.+. ..+ .+...-+++||||+.+. .
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~----~~~~~y~~~~~~------~~~~~---~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA----GRSSAYLPLQAA------AGRLR---DALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEeHHHh------hhhHH---HHHHHHhcCCEEEEeCcccccCCh
Confidence 59999999999999999998775432 110000011100 01000 001 11233589999999885 4
Q ss_pred HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh-hhhccCCChHHHH
Q 003637 558 SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI-YLILDKADEQTDR 636 (806)
Q Consensus 558 ~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli-~il~d~~~~~~d~ 636 (806)
..+..|+..++... .....+|.++|-....|. .+.+.|.|||.-- .+.
T Consensus 110 ~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~---------~~~~dL~SRl~~~~~~~---------- 158 (233)
T PRK08727 110 EDEVALFDFHNRAR------------AAGITLLYTARQMPDGLA---------LVLPDLRSRLAQCIRIG---------- 158 (233)
T ss_pred HHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhh---------hhhHHHHHHHhcCceEE----------
Confidence 45667777776531 123457888874433321 2346777886322 122
Q ss_pred HHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHH
Q 003637 637 RLAKHIVSLHFENPENSEQGVLDLATLTAYVSY-ARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIE 715 (806)
Q Consensus 637 ~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~-ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Le 715 (806)
...++.+.+..++.. ++. ..-.+++++.++|.+.. ++ +.|.+.
T Consensus 159 ------------------l~~~~~e~~~~iL~~~a~~-~~l~l~~e~~~~La~~~---------~r--------d~r~~l 202 (233)
T PRK08727 159 ------------------LPVLDDVARAAVLRERAQR-RGLALDEAAIDWLLTHG---------ER--------ELAGLV 202 (233)
T ss_pred ------------------ecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhC---------CC--------CHHHHH
Confidence 233444555555543 332 23569999999998752 12 267777
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 003637 716 SLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 716 slirla~a~A~l~~~~~V~~~Dv~~ai~ 743 (806)
+++....+.+... ...||...+++++.
T Consensus 203 ~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 203 ALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 7777666444443 34688777776653
No 186
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.62 E-value=3.9e-08 Score=94.44 Aligned_cols=89 Identities=21% Similarity=0.386 Sum_probs=64.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESA 559 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~ 559 (806)
.+|||+|+|||||+.+|+++|....+. ...+..+.+... . ...+..+.+|++||+|++.++++.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~----~~~~~~~~~~~~------~------~~~l~~a~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRA----NGPFIVIDCASL------P------AELLEQAKGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTC----CS-CCCCCHHCT------C------HHHHHHCTTSEEEEECGCCS-HHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCcc----CCCeEEechhhC------c------HHHHHHcCCCEEEECChHHCCHHH
Confidence 499999999999999999999998764 334444444422 1 123344689999999999999999
Q ss_pred HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 560 RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 560 ~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
|..|.+++++.. ..++++|+++...
T Consensus 86 Q~~L~~~l~~~~------------~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 86 QRRLLDLLKRQE------------RSNVRLIASSSQD 110 (138)
T ss_dssp HHHHHHHHHHCT------------TTTSEEEEEECC-
T ss_pred HHHHHHHHHhcC------------CCCeEEEEEeCCC
Confidence 999999998631 3456788887743
No 187
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.6e-07 Score=105.77 Aligned_cols=223 Identities=23% Similarity=0.275 Sum_probs=140.9
Q ss_pred ceEEEC----CCCChHHHHHHHHHHHCC---C-----------------CeeccCCCcccccceeeeecCCCCC------
Q 003637 481 NILLVG----DPGTSKSQLLQYIHKLSP---R-----------------GIYTSGKGSSAVGLTAYVTKDPETG------ 530 (806)
Q Consensus 481 nvLLvG----~PGtGKS~la~~ia~~~p---r-----------------~~~t~g~~~~~~glta~~~k~~~~g------ 530 (806)
++.+.| .+|.+++..++.+..... + .-+....+.....|-..+..++..|
T Consensus 133 ~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~ 212 (647)
T COG1067 133 QIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTG 212 (647)
T ss_pred hhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhhhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCC
Confidence 555656 889999888765555421 1 1111112223334444555555544
Q ss_pred ccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEe-----ecce---eeeecCceEEEEecCCCCCCCCC
Q 003637 531 ETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIA-----KAGI---IASLNARTSVLACANPSGSRYNP 602 (806)
Q Consensus 531 e~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~-----kag~---~~~l~~~~siIAAaNp~~g~~~~ 602 (806)
...+++|++..|++|+|||||+..|....+..++.+|+++...+. ..+. .-..++++.++++.|+..-
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l---- 288 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDL---- 288 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHH----
Confidence 456789999999999999999999998899999999987644432 1111 2346788999998885431
Q ss_pred CCcccccccCCccccCcchhhh---hhc-cCC-ChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCC
Q 003637 603 RLSVIENIHLPPTLLSRFDLIY---LIL-DKA-DEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPK 677 (806)
Q Consensus 603 ~~~~~~~i~lp~~LlsRFDli~---il~-d~~-~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ 677 (806)
..+-+++.+|-+..- .+. ..+ .++...+++..+.+. .++..--|.
T Consensus 289 -------~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~-----------------------v~~d~~ip~ 338 (647)
T COG1067 289 -------EDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQE-----------------------LARDGNIPH 338 (647)
T ss_pred -------HhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHH-----------------------HHhcCCCCC
Confidence 123344445544421 111 122 122223333333321 111213478
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 678 LSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 678 ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
++.+|.+.|.++.. |..+ ......+.+|.|.++++.|.-.|....++.|+.+||.+|++.
T Consensus 339 ~~~~Av~~li~~a~--R~Ag-----~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 339 LDKDAVEELIREAA--RRAG-----DQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCHHHHHHHHHHHH--Hhcc-----ccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 99999888876532 2221 234577889999999999999999999999999999999865
No 188
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.56 E-value=1.3e-06 Score=97.03 Aligned_cols=99 Identities=18% Similarity=0.241 Sum_probs=59.5
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHH
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSES 558 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~ 558 (806)
+.|++++||+|||||.++.++...+ ...+|.-.+.+.|-.-... -..|.+... -+++|||+..++..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~~--------~~lg~v~~~--DlLI~DEvgylp~~ 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIST--------RQIGLVGRW--DVVAFDEVATLKFA 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHHH--------HHHhhhccC--CEEEEEcCCCCcCC
Confidence 3599999999999999999877652 1112422233333211100 122333333 48999999985433
Q ss_pred ----HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecC
Q 003637 559 ----ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACAN 594 (806)
Q Consensus 559 ----~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaN 594 (806)
..+.|...|+++.++ ++... ..+.++++.-.|
T Consensus 276 ~~~~~v~imK~yMesg~fs--RG~~~--~~a~as~vfvGN 311 (449)
T TIGR02688 276 KPKELIGILKNYMESGSFT--RGDET--KSSDASFVFLGN 311 (449)
T ss_pred chHHHHHHHHHHHHhCcee--cccee--eeeeeEEEEEcc
Confidence 447788889999987 43333 345555555545
No 189
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.56 E-value=1.9e-07 Score=106.07 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=109.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC------eeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG------IYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~------~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
+++|+|+||+|||+|++++++.+... +|.+...+... +... .+.....++ . .. +....+++|||++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~-~~~~~~~~~--~-~~--~~~~dlLiiDDi~~ 210 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNA-LRNNKMEEF--K-EK--YRSVDLLLIDDIQF 210 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHH-HHcCCHHHH--H-HH--HHhCCEEEEehhhh
Confidence 68999999999999999999876321 22211110000 0000 000000000 0 01 12235899999998
Q ss_pred CCHH--HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh-hhhhccCCC
Q 003637 555 MSES--ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL-IYLILDKAD 631 (806)
Q Consensus 555 m~~~--~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl-i~il~d~~~ 631 (806)
+... .+..|+..++... .....+|.++|..... --.+.+.+.+||.- ..+.+..|+
T Consensus 211 l~~~~~~~~~l~~~~n~~~------------~~~~~iiits~~~p~~---------l~~l~~~l~SRl~~g~~v~i~~pd 269 (405)
T TIGR00362 211 LAGKERTQEEFFHTFNALH------------ENGKQIVLTSDRPPKE---------LPGLEERLRSRFEWGLVVDIEPPD 269 (405)
T ss_pred hcCCHHHHHHHHHHHHHHH------------HCCCCEEEecCCCHHH---------HhhhhhhhhhhccCCeEEEeCCCC
Confidence 7543 4566666665321 0112345555532211 11245778899964 334556777
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
.+....|++..... ....++++++++|.+. +.+ ++
T Consensus 270 ~~~r~~il~~~~~~----------------------------~~~~l~~e~l~~ia~~---------~~~--------~~ 304 (405)
T TIGR00362 270 LETRLAILQKKAEE----------------------------EGLELPDEVLEFIAKN---------IRS--------NV 304 (405)
T ss_pred HHHHHHHHHHHHHH----------------------------cCCCCCHHHHHHHHHh---------cCC--------CH
Confidence 66666665554431 2356899999999864 222 38
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 712 RQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 712 R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
|+|+.++....+.|.+.. ..|+.+.+.+++...
T Consensus 305 r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 305 RELEGALNRLLAYASLTG-KPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Confidence 999999988888887654 558888888777543
No 190
>PRK04132 replication factor C small subunit; Provisional
Probab=98.55 E-value=7.9e-07 Score=107.37 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=108.0
Q ss_pred cceEEEC--CCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccc----ccccccCCceeeccccc
Q 003637 480 INILLVG--DPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLES----GALVLSDRGICCIDEFD 553 (806)
Q Consensus 480 invLLvG--~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~----Gal~lAd~GIl~IDEid 553 (806)
+|-+.-| |.+.|||++|+++++.+... +......-++|+..+....=...++. ..+.-+...|++|||+|
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~----~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE----NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc----cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 4557778 99999999999999886221 11111222222211100000000000 00111123699999999
Q ss_pred cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChH
Q 003637 554 KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQ 633 (806)
Q Consensus 554 km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~ 633 (806)
+|+.+.|++|+..||+- +..+.+|.+||+ ...+++++.||+..+
T Consensus 641 ~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~-------------~~kIi~tIrSRC~~i---------- 684 (846)
T PRK04132 641 ALTQDAQQALRRTMEMF-------------SSNVRFILSCNY-------------SSKIIEPIQSRCAIF---------- 684 (846)
T ss_pred cCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCC-------------hhhCchHHhhhceEE----------
Confidence 99999999999999972 234678888883 345668999998554
Q ss_pred HHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHH
Q 003637 634 TDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQ 713 (806)
Q Consensus 634 ~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~ 713 (806)
....++.+.+...+.++.......+++++++.|.+.. .|+ +|.
T Consensus 685 --------------------~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s---------~GD--------lR~ 727 (846)
T PRK04132 685 --------------------RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA---------EGD--------MRR 727 (846)
T ss_pred --------------------eCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc---------CCC--------HHH
Confidence 3345555566666555444334457888888887652 122 677
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 003637 714 IESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 714 Leslirla~a~A~l~~~~~V~~~Dv~~a 741 (806)
..++++.+.+. ...|+.+++..+
T Consensus 728 AIn~Lq~~~~~-----~~~It~~~V~~~ 750 (846)
T PRK04132 728 AINILQAAAAL-----DDKITDENVFLV 750 (846)
T ss_pred HHHHHHHHHHh-----cCCCCHHHHHHH
Confidence 77777654432 245676666543
No 191
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=3.3e-07 Score=102.94 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=86.8
Q ss_pred cccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc----------
Q 003637 445 APNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS---------- 514 (806)
Q Consensus 445 ~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~---------- 514 (806)
.-.|+|++.+++.+.-.+..+.......+ .+-.+.+||+||||+|||++|+.+++.+.-.. ..+.+.
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~-~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTD-PDEPGCGECRACRTVL 80 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC-CCCCCCCCCHHHHHHh
Confidence 34688999999987766654421100111 11234699999999999999999998752110 000000
Q ss_pred --ccccceeeeecCCCCC--c--cccc-cc-cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 515 --SAVGLTAYVTKDPETG--E--TVLE-SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 515 --~~~glta~~~k~~~~g--e--~~le-~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
..-.+..........+ + ...+ .. .-..+...|++|||+|+|++..+++|+..||+-. +..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~ 148 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRT 148 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCC
Confidence 0000000000000000 0 0000 00 0112345699999999999999999999999721 112
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQ 633 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~ 633 (806)
+.|++|+| ...++++++||+-.+ .+..++.+
T Consensus 149 ~fIL~a~~--------------~~~llpTIrSRc~~i--~f~~~~~~ 179 (394)
T PRK07940 149 VWLLCAPS--------------PEDVLPTIRSRCRHV--ALRTPSVE 179 (394)
T ss_pred eEEEEECC--------------hHHChHHHHhhCeEE--ECCCCCHH
Confidence 44666666 234668999998433 34444433
No 192
>PRK09087 hypothetical protein; Validated
Probab=98.51 E-value=1.3e-06 Score=91.12 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=100.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
.++|+|++|+|||+|++++++.. +..|.+.. ..+.+ .+.....+.++||+++.+.. ++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~--------------~~~~~------~~~~~~~~~l~iDDi~~~~~-~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-DALLIHPN--------------EIGSD------AANAAAEGPVLIEDIDAGGF-DE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-CCEEecHH--------------HcchH------HHHhhhcCeEEEECCCCCCC-CH
Confidence 59999999999999999988754 22121110 01111 11111236899999998753 35
Q ss_pred HHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhh-hhccCCChHHHHHHH
Q 003637 561 SMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY-LILDKADEQTDRRLA 639 (806)
Q Consensus 561 ~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~-il~d~~~~~~d~~la 639 (806)
..|++.++.- ......+|.+++.....|. ...+.|.|||.--. +-...++
T Consensus 104 ~~lf~l~n~~------------~~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l~~pd-------- 154 (226)
T PRK09087 104 TGLFHLINSV------------RQAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEIGEPD-------- 154 (226)
T ss_pred HHHHHHHHHH------------HhCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeecCCCC--------
Confidence 5666665431 1122345655553332221 12367889985221 2233344
Q ss_pred HHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHH
Q 003637 640 KHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIR 719 (806)
Q Consensus 640 ~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslir 719 (806)
.+.+.+++...-+.....+++++.++|.+... + ++|.++.++.
T Consensus 155 --------------------~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~---------r--------~~~~l~~~l~ 197 (226)
T PRK09087 155 --------------------DALLSQVIFKLFADRQLYVDPHVVYYLVSRME---------R--------SLFAAQTIVD 197 (226)
T ss_pred --------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh---------h--------hHHHHHHHHH
Confidence 34444444333333345699999999987631 1 2688877775
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 720 LSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 720 la~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
...+.+... ...||...+++++..+
T Consensus 198 ~L~~~~~~~-~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 198 RLDRLALER-KSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHHhh
Confidence 555555443 4558888888887654
No 193
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.51 E-value=3.5e-07 Score=105.29 Aligned_cols=191 Identities=16% Similarity=0.211 Sum_probs=108.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC------eeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG------IYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~------~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
+++|+|+||+|||+|++++++.+... +|.+...+... +.... +.. ..+ .+. . .+..--+++|||++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~-~~~-~~~-~~~-~--~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNAL-RNN-TME-EFK-E--KYRSVDVLLIDDIQF 222 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHH-HcC-cHH-HHH-H--HHhcCCEEEEehhhh
Confidence 69999999999999999999886321 12211111000 00000 000 000 000 0 111335899999998
Q ss_pred CCH--HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh-hhhhccCCC
Q 003637 555 MSE--SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL-IYLILDKAD 631 (806)
Q Consensus 555 m~~--~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl-i~il~d~~~ 631 (806)
+.. ..+..|+..++... .....++.++|..... --.+.+.+.|||.- ..+-+..|+
T Consensus 223 l~~~~~~~~~l~~~~n~l~------------~~~~~iiits~~~p~~---------l~~l~~~l~SRl~~gl~v~i~~pd 281 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALH------------EAGKQIVLTSDRPPKE---------LPGLEERLRSRFEWGLTVDIEPPD 281 (450)
T ss_pred hcCCHHHHHHHHHHHHHHH------------HCCCcEEEECCCCHHH---------HHHHHHHHHhHhcCCeeEEecCCC
Confidence 754 34556666554311 0011244445432211 01145778899853 223446666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
.+....+++.... .....++++++++|.+. ..+ ++
T Consensus 282 ~~~r~~il~~~~~----------------------------~~~~~l~~e~l~~ia~~---------~~~--------~~ 316 (450)
T PRK00149 282 LETRIAILKKKAE----------------------------EEGIDLPDEVLEFIAKN---------ITS--------NV 316 (450)
T ss_pred HHHHHHHHHHHHH----------------------------HcCCCCCHHHHHHHHcC---------cCC--------CH
Confidence 6555555554433 12346899999999864 222 38
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 712 RQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 712 R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
|.|+.++....+.|.+.. ..|+.+.+.+++.-+
T Consensus 317 R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 317 RELEGALNRLIAYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 999999988888887764 448888888887654
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=95.12 Aligned_cols=204 Identities=18% Similarity=0.187 Sum_probs=126.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-------------cCCCCCcccccc-----cccc-c
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-------------KDPETGETVLES-----GALV-L 541 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~-------------k~~~~ge~~le~-----Gal~-l 541 (806)
|++++|+||||||.+++++.+.+....- +....-++|..... .-+.+|.-..+. ..+. .
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~--~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSA--NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhc--cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 7999999999999999999998744310 11122223322110 112222111110 0111 1
Q ss_pred cCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch
Q 003637 542 SDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD 621 (806)
Q Consensus 542 Ad~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD 621 (806)
...-|+.+||+|.|-...+..|++...-..- ...++.+|+.+|-... ...+.+-+.++|-
T Consensus 122 ~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~~~~----------~~~ld~rv~s~l~ 181 (366)
T COG1474 122 GKTVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSNDDKF----------LDYLDPRVKSSLG 181 (366)
T ss_pred CCeEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEeccHHH----------HHHhhhhhhhccC
Confidence 1224789999999988876666666543221 1567889999984321 1122233333331
Q ss_pred hhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHh-cCCC-CCCHHHHHHHHHHHHHHHhcCCC
Q 003637 622 LIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK-HIHP-KLSDEAAEELTRGYVEMRRRGNF 699 (806)
Q Consensus 622 li~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~-~~~p-~ls~ea~~~L~~~y~~lR~~~~~ 699 (806)
. ....+++++.++|..++..-.. .+.+ .+++++.+++...+.+ .
T Consensus 182 ~----------------------------~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~------~ 227 (366)
T COG1474 182 P----------------------------SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAA------E 227 (366)
T ss_pred c----------------------------ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHH------c
Confidence 1 1245677888888888764333 2333 7899999988866432 1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 700 PGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 700 ~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
.| .+|....++|.|.-+|.-+.+..|+.+|+..|..-++..
T Consensus 228 ~G--------DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 228 SG--------DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERD 268 (366)
T ss_pred Cc--------cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHH
Confidence 11 389999999999999999999999999999996555543
No 195
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.6e-06 Score=88.93 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=59.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccccc---CCceeeccccccC--
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS---DRGICCIDEFDKM-- 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm-- 555 (806)
.|||+||||||||..|+++++..... +..+=-+..+.+--..|....+ ..+.+| ...|+|+||+|.+
T Consensus 213 gvllygppgtgktl~aravanrtdac-------firvigselvqkyvgegarmvr-elf~martkkaciiffdeidaigg 284 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDAC-------FIRVIGSELVQKYVGEGARMVR-ELFEMARTKKACIIFFDEIDAIGG 284 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCce-------EEeehhHHHHHHHhhhhHHHHH-HHHHHhcccceEEEEeeccccccC
Confidence 79999999999999999999765221 1111111112221111221111 123333 2378999999976
Q ss_pred ---------CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 556 ---------SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 556 ---------~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
+.+.|..++|.+.|- .|... ..++.|+.|+|..
T Consensus 285 arfddg~ggdnevqrtmleli~ql------dgfdp--rgnikvlmatnrp 326 (435)
T KOG0729|consen 285 ARFDDGAGGDNEVQRTMLELINQL------DGFDP--RGNIKVLMATNRP 326 (435)
T ss_pred ccccCCCCCcHHHHHHHHHHHHhc------cCCCC--CCCeEEEeecCCC
Confidence 345788899998872 12211 2346789999954
No 196
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.5e-07 Score=103.16 Aligned_cols=158 Identities=24% Similarity=0.256 Sum_probs=95.4
Q ss_pred ccchhhhHHHHhhhhcCCc-cccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecC
Q 003637 448 IWELDDVKKGLLCQLFGGN-ALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKD 526 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~-~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~ 526 (806)
|-|+.++|+++.-.+.--. ....-.....|-...|||+||||||||.||.+++..++-. .+.+|+
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~--------------fisvKG 734 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR--------------FISVKG 734 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee--------------EEEecC
Confidence 5688888888873332211 1111123456666699999999999999999999887443 222333
Q ss_pred CC-----CC--ccccc--cccccccCCceeeccccccCCHH-----------HHHHHHHHHhhcEEEEeecceeeeecCc
Q 003637 527 PE-----TG--ETVLE--SGALVLSDRGICCIDEFDKMSES-----------ARSMLHEVMEQQTVSIAKAGIIASLNAR 586 (806)
Q Consensus 527 ~~-----~g--e~~le--~Gal~lAd~GIl~IDEidkm~~~-----------~~~~L~e~Me~q~isi~kag~~~~l~~~ 586 (806)
|+ -| |...+ ...-..|...|+|+||||.+.+. .-+.|+.-|+--. | + ..
T Consensus 735 PElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------g----l-~G 803 (952)
T KOG0735|consen 735 PELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------G----L-DG 803 (952)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------c----c-ce
Confidence 31 01 00000 00112345689999999998764 2356666665311 1 1 23
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhhhhccCCChHHHHHHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~il~d~~~~~~d~~la~~il~ 644 (806)
+.|+||+.... -|.|+|++ |+|-. +..+.|++.+..+|...+.+
T Consensus 804 V~i~aaTsRpd-------------liDpALLRpGRlD~~-v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 804 VYILAATSRPD-------------LIDPALLRPGRLDKL-VYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred EEEEEecCCcc-------------ccCHhhcCCCcccee-eeCCCCCcHHHHHHHHHHhh
Confidence 66888876332 23466665 77655 56788888888888776655
No 197
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=7.6e-07 Score=101.85 Aligned_cols=191 Identities=16% Similarity=0.231 Sum_probs=104.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC------CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR------GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr------~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
+++|+|+||+|||+|++++++.+.. .+|.+...+...-..+. +.....++ . .......-+++|||++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~--~~~~~~~f--~--~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSM--KEGKLNEF--R--EKYRKKVDVLLIDDVQF 205 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH--hcccHHHH--H--HHHHhcCCEEEEechhh
Confidence 7999999999999999999987522 23332211110000000 00000000 0 00011345899999997
Q ss_pred CCH--HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh-hhhccCCC
Q 003637 555 MSE--SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI-YLILDKAD 631 (806)
Q Consensus 555 m~~--~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli-~il~d~~~ 631 (806)
+.. ..+..|+..++.-. .....+|.++|..... --.+.+.+.|||..- .+-++.|+
T Consensus 206 l~~~~~~q~elf~~~n~l~------------~~~k~iIitsd~~p~~---------l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 206 LIGKTGVQTELFHTFNELH------------DSGKQIVICSDREPQK---------LSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCcHHHHHHHHHHHHHHH------------HcCCeEEEECCCCHHH---------HHHHHHHHhhHHhcCceEeeCCCC
Confidence 743 34555666654311 0112245555422211 112446788898633 23456677
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
.+....|++..... ....+++++.++|.+.+ .++ +
T Consensus 265 ~e~r~~IL~~~~~~----------------------------~~~~l~~ev~~~Ia~~~---------~~~--------~ 299 (440)
T PRK14088 265 EETRKKIARKMLEI----------------------------EHGELPEEVLNFVAENV---------DDN--------L 299 (440)
T ss_pred HHHHHHHHHHHHHh----------------------------cCCCCCHHHHHHHHhcc---------ccC--------H
Confidence 66666665554431 22458888888887642 223 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 712 RQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 712 R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
|+|+.++....+.|.+.. ..++.+.+.+++.-
T Consensus 300 R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~ 331 (440)
T PRK14088 300 RRLRGAIIKLLVYKETTG-EEVDLKEAILLLKD 331 (440)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 899888877677776654 44777666666643
No 198
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.41 E-value=1.2e-06 Score=95.21 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=71.1
Q ss_pred CceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 544 RGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 544 ~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
.||+||||++.++-+.-+.|..+||.-. ...||.|+|..-..-+.. .......+|..|++|+ ++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt-~~~sphGiP~DlLDRl-lI 342 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGT-DIISPHGIPLDLLDRL-LI 342 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-S-EEETT--HHHHTTE-EE
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCc-cCcCCCCCCcchHhhc-EE
Confidence 3899999999999999999999999732 245778888643221111 1223668999999998 44
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~ 703 (806)
+ .-.+++.+++++.+..-.+.....++++|+++|.+...+
T Consensus 343 I-----------------------------~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~----------- 382 (398)
T PF06068_consen 343 I-----------------------------RTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVE----------- 382 (398)
T ss_dssp E-----------------------------EE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHH-----------
T ss_pred E-----------------------------ECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhh-----------
Confidence 1 234556666777766544456678999999999877432
Q ss_pred CcccccCHHHHHHHHHHH
Q 003637 704 KKVITATPRQIESLIRLS 721 (806)
Q Consensus 704 ~~~~~it~R~Leslirla 721 (806)
.|+|....|+..|
T Consensus 383 -----~SLRYAiqLi~~a 395 (398)
T PF06068_consen 383 -----TSLRYAIQLITPA 395 (398)
T ss_dssp -----S-HHHHHHCHHHH
T ss_pred -----ccHHHHHHhhhhh
Confidence 3467666665544
No 199
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=9.1e-07 Score=103.06 Aligned_cols=189 Identities=15% Similarity=0.229 Sum_probs=108.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC------CeeccCCCcccccceeeeecCCCCCcc-ccccccccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR------GIYTSGKGSSAVGLTAYVTKDPETGET-VLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr------~~~t~g~~~~~~glta~~~k~~~~ge~-~le~Gal~lAd~GIl~IDEid 553 (806)
+++|+|++|+|||.|++++++.+.+ .+|.+...+.. .+...+ ++ +.. .+. .. ..+-.++|||||+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al-~~---~~~~~f~-~~--y~~~DLLlIDDIq 387 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSI-RD---GKGDSFR-RR--YREMDILLVDDIQ 387 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-Hh---ccHHHHH-HH--hhcCCEEEEehhc
Confidence 5999999999999999999997632 12322211110 000000 00 000 000 00 1233589999999
Q ss_pred cCCHH--HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhh-hccCC
Q 003637 554 KMSES--ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL-ILDKA 630 (806)
Q Consensus 554 km~~~--~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~i-l~d~~ 630 (806)
.+..+ .+..|+.+++... ..+..||.|+|..... --.+.+.|.|||..-.+ -+..|
T Consensus 388 ~l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~e---------L~~l~~rL~SRf~~GLvv~I~~P 446 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQ---------LVTLEDRLRNRFEWGLITDVQPP 446 (617)
T ss_pred cccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHh---------hhhccHHHHhhhhcCceEEcCCC
Confidence 88543 4567777776531 1223466677744322 12356788899964432 34556
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 003637 631 DEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITAT 710 (806)
Q Consensus 631 ~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it 710 (806)
+.+....|++.... .....++++++++|.+.+ .. +
T Consensus 447 D~EtR~aIL~kka~----------------------------~r~l~l~~eVi~yLa~r~---------~r--------n 481 (617)
T PRK14086 447 ELETRIAILRKKAV----------------------------QEQLNAPPEVLEFIASRI---------SR--------N 481 (617)
T ss_pred CHHHHHHHHHHHHH----------------------------hcCCCCCHHHHHHHHHhc---------cC--------C
Confidence 65555555444332 133568899999888653 11 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 711 PRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 711 ~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
+|+|+.++....+.|.+.. ..|+.+.+.++++-
T Consensus 482 vR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~ 514 (617)
T PRK14086 482 IRELEGALIRVTAFASLNR-QPVDLGLTEIVLRD 514 (617)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 7999888877677776653 44777776666643
No 200
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=9.7e-07 Score=101.14 Aligned_cols=195 Identities=15% Similarity=0.262 Sum_probs=108.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC------CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR------GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr------~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
+++|+|++|+|||+|++++++.+.. .+|.+...+...-..+. ... .+. ++.-.-...+.-+++|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l--~~~-~~~--~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL--QKT-HKE--IEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH--HHh-hhH--HHHHHHHhccCCEEEEecccc
Confidence 7999999999999999999885521 12222111110000000 000 000 000000012345899999998
Q ss_pred CC--HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh-hhhhccCCC
Q 003637 555 MS--ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL-IYLILDKAD 631 (806)
Q Consensus 555 m~--~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl-i~il~d~~~ 631 (806)
+. ...+..|+..++...- ..-.+|.++|..... --.+.+.|.+||.- +.+-+..|+
T Consensus 218 l~~k~~~~e~lf~l~N~~~~------------~~k~iIltsd~~P~~---------l~~l~~rL~SR~~~Gl~~~L~~pd 276 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFIE------------NDKQLFFSSDKSPEL---------LNGFDNRLITRFNMGLSIAIQKLD 276 (450)
T ss_pred ccCCHHHHHHHHHHHHHHHH------------cCCcEEEECCCCHHH---------HhhccHHHHHHHhCCceeccCCcC
Confidence 86 5667778777765321 112366666633211 12345778888852 222334555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
.+....+.++.+... .....++++++++|.+. ..|+ +
T Consensus 277 ~e~r~~iL~~~~~~~--------------------------gl~~~l~~evl~~Ia~~---------~~gd--------~ 313 (450)
T PRK14087 277 NKTATAIIKKEIKNQ--------------------------NIKQEVTEEAINFISNY---------YSDD--------V 313 (450)
T ss_pred HHHHHHHHHHHHHhc--------------------------CCCCCCCHHHHHHHHHc---------cCCC--------H
Confidence 555555544443311 12125899999999864 2233 8
Q ss_pred HHHHHHHHHHHHHHHHhc-CCCCCHhhHHHHHHH
Q 003637 712 RQIESLIRLSEALARIRL-SELVEKHDVEEAFRL 744 (806)
Q Consensus 712 R~Leslirla~a~A~l~~-~~~V~~~Dv~~ai~l 744 (806)
|.|+.++....+.|.+.. ...|+.+.+.++++-
T Consensus 314 R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 314 RKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 999999877666666553 256888888877754
No 201
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.6e-06 Score=91.81 Aligned_cols=112 Identities=18% Similarity=0.182 Sum_probs=67.6
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe---ec---cCCCc------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YT---SGKGS------ 514 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~---~t---~g~~~------ 514 (806)
.++||+.++..+.-.+-.+. ..+-+||+|++|+||+++++.+++.+.-.. +. .+.+.
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-----------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c 92 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-----------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVW 92 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-----------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHH
Confidence 56899999999998777662 223599999999999999999999874310 00 00000
Q ss_pred --ccc----cceeeeec-CCCCCc----cccc----c-ccccc----cCCceeeccccccCCHHHHHHHHHHHhh
Q 003637 515 --SAV----GLTAYVTK-DPETGE----TVLE----S-GALVL----SDRGICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 515 --~~~----glta~~~k-~~~~ge----~~le----~-Gal~l----Ad~GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
... ++...... +..++. ...+ . ..+.. ...-|++|||+|.|+...+++|+..||+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 000 01101000 111110 0000 0 01111 1234999999999999999999999997
No 202
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.7e-06 Score=97.50 Aligned_cols=190 Identities=22% Similarity=0.242 Sum_probs=113.8
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccc---ccccccCCceeecccc
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLES---GALVLSDRGICCIDEF 552 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~---Gal~lAd~GIl~IDEi 552 (806)
.+-.-.+|++||||||||.+++++++...--+|.... ...+.+-+...+..++. -+...+-..+|||||+
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~-------peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLING-------PELISKFPGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHhCceeEeccc-------HHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhH
Confidence 4444589999999999999999999987433332221 11111111111111111 1111222679999999
Q ss_pred ccCCH--------H--HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC-cch
Q 003637 553 DKMSE--------S--ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS-RFD 621 (806)
Q Consensus 553 dkm~~--------~--~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls-RFD 621 (806)
|.+-+ + .-..|+..|+.-. -...+.+|+|+|.. -.|.+++.+ |||
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp-------------~sld~alRRgRfd 343 (693)
T KOG0730|consen 288 DALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRP-------------DSLDPALRRGRFD 343 (693)
T ss_pred hhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCc-------------cccChhhhcCCCc
Confidence 98875 2 3356777776421 12457799999943 345577765 997
Q ss_pred hhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 003637 622 LIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPG 701 (806)
Q Consensus 622 li~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~g 701 (806)
-- +....|+......|++++.+.+ +..++.....+...
T Consensus 344 ~e-v~IgiP~~~~RldIl~~l~k~~-----------------------------~~~~~~~l~~iA~~------------ 381 (693)
T KOG0730|consen 344 RE-VEIGIPGSDGRLDILRVLTKKM-----------------------------NLLSDVDLEDIAVS------------ 381 (693)
T ss_pred ce-eeecCCCchhHHHHHHHHHHhc-----------------------------CCcchhhHHHHHHH------------
Confidence 65 5567788777778877776532 11233343444322
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 003637 702 SSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 702 n~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~ 747 (806)
..+.+...|.++.+.|...|-.+ +.+|+..|..-...
T Consensus 382 ----thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 382 ----THGYVGADLAALCREASLQATRR-----TLEIFQEALMGIRP 418 (693)
T ss_pred ----ccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCCc
Confidence 12345678888888877776644 77788877654443
No 203
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.39 E-value=3.8e-06 Score=89.68 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC
Q 003637 655 QGVLDLATLTAYVSYARKHI----HPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLS 730 (806)
Q Consensus 655 ~~~i~~~~Lk~yi~~ar~~~----~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~ 730 (806)
.+.++.+++++|+...-... .+.+++++.+.|.+. ..|+ +|.+..+...+...|..+..
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~---------s~G~--------p~~i~~l~~~~~~~a~~~~~ 251 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF---------SRGI--------PRLINILCDRLLLSAFLEEK 251 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH---------cCCc--------ccHHHHHHHHHHHHHHHcCC
Confidence 45566677777765433222 246899999988764 1222 58899999999888888889
Q ss_pred CCCCHhhHHHHHHHHH
Q 003637 731 ELVEKHDVEEAFRLLE 746 (806)
Q Consensus 731 ~~V~~~Dv~~ai~l~~ 746 (806)
..|+.++|.+++.-+.
T Consensus 252 ~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 REIGGEEVREVIAEID 267 (269)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987653
No 204
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.37 E-value=3.6e-05 Score=86.12 Aligned_cols=138 Identities=25% Similarity=0.319 Sum_probs=96.6
Q ss_pred hcChhHHHHHHHhhc--ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 431 SRQPNIYETLTRSLA--PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 431 ~~~~~~~~~l~~si~--P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
....+..+.|+.|+- |+-+.. ..|..+|+-|+.-+.+ +.|++=.||.|||||.+-+ +++|-+..
T Consensus 169 FT~eEWiD~LlrS~G~eP~~~~~-r~Kl~~L~RLiPlVE~----------N~NliELgPrGTGKS~vy~---eiSp~~~l 234 (457)
T PF13337_consen 169 FTTEEWIDLLLRSIGYEPSGFSE-RQKLLLLARLIPLVER----------NYNLIELGPRGTGKSYVYK---EISPYGIL 234 (457)
T ss_pred cCHHHHHHHHHHhcCCCccccCH-HHHHHHHHhHHHhccc----------ccceEEEcCCCCCceeehh---hcCcccEE
Confidence 344556788888875 444433 4666777767765543 3599999999999999854 55677777
Q ss_pred ccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC---HHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 509 TSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS---ESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 509 t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~---~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
.+|...+.+.|-.-.. ++ ..|.+..-| ++++||+..+. ++....|...||+|.++.. + .+..+
T Consensus 235 iSGG~~T~A~LFyn~~----~~----~~GlV~~~D--~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG--~--~~i~a 300 (457)
T PF13337_consen 235 ISGGQVTVAKLFYNMS----TG----QIGLVGRWD--VVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRG--K--EEINA 300 (457)
T ss_pred EECCCcchHHheeecc----CC----cceeeeecc--EEEEEeccCcccCChHHHHHHHHHHhccceeec--c--ccccc
Confidence 8888777777764321 12 446555444 78999998775 4555788889999999843 3 36778
Q ss_pred ceEEEEecCCC
Q 003637 586 RTSVLACANPS 596 (806)
Q Consensus 586 ~~siIAAaNp~ 596 (806)
.++++...|..
T Consensus 301 ~as~vf~GNi~ 311 (457)
T PF13337_consen 301 DASMVFVGNIN 311 (457)
T ss_pred ceeEEEEcCcC
Confidence 88888888854
No 205
>PRK05642 DNA replication initiation factor; Validated
Probab=98.36 E-value=4.9e-06 Score=87.30 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=97.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC----CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~ 556 (806)
+++|+|++|+|||.|++++++.+.. .+|.+...+.. ...... ..+ .+.-++|||+++.+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~------------~~~~~~--~~~--~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD------------RGPELL--DNL--EQYELVCLDDLDVIA 110 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh------------hhHHHH--Hhh--hhCCEEEEechhhhc
Confidence 7899999999999999999876421 22221111000 000000 011 122479999999775
Q ss_pred --HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhh-ccCCChH
Q 003637 557 --ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLI-LDKADEQ 633 (806)
Q Consensus 557 --~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il-~d~~~~~ 633 (806)
+..+..|+..++.-. ..+..+|.++|.....+. .+.+.|.|||-.-.++ +..+
T Consensus 111 ~~~~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~l~~~--- 166 (234)
T PRK05642 111 GKADWEEALFHLFNRLR------------DSGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQMRGL--- 166 (234)
T ss_pred CChHHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeeecCCC---
Confidence 344566777776421 112335555553322211 1236788998422111 2333
Q ss_pred HHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHH
Q 003637 634 TDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVS-YARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPR 712 (806)
Q Consensus 634 ~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~-~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R 712 (806)
+.+.+.+++. .+.. ..-.+++++.++|.+.. ++ ++|
T Consensus 167 -------------------------~~e~~~~il~~ka~~-~~~~l~~ev~~~L~~~~---------~~--------d~r 203 (234)
T PRK05642 167 -------------------------SDEDKLRALQLRASR-RGLHLTDEVGHFILTRG---------TR--------SMS 203 (234)
T ss_pred -------------------------CHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHhc---------CC--------CHH
Confidence 3333333333 3332 23468999999998752 22 389
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 713 QIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 713 ~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
.|++++..-.. +.+.....||..-+++++
T Consensus 204 ~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 204 ALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 99998877654 444444568877776665
No 206
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.4e-07 Score=94.19 Aligned_cols=192 Identities=21% Similarity=0.285 Sum_probs=104.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccccccccc---CCceeeccccccCCH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS---DRGICCIDEFDKMSE 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lA---d~GIl~IDEidkm~~ 557 (806)
.|+|+|+||||||.||+++|+..... |..+--+..+.+....|-. +-...|..| ...|+||||||.+..
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSAT-------FlRvvGseLiQkylGdGpk-lvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSAT-------FLRVVGSELIQKYLGDGPK-LVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchh-------hhhhhhHHHHHHHhccchH-HHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 79999999999999999999764211 1111111111111111111 111112222 247999999998743
Q ss_pred -----------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhh
Q 003637 558 -----------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIY 624 (806)
Q Consensus 558 -----------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~ 624 (806)
+.|..++|.++|- .|... ..++-||.|+|..+. |.|+|++ |.|--
T Consensus 293 KRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie~-------------LDPaLiRPGrIDrK- 350 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIET-------------LDPALIRPGRIDRK- 350 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEecccccc-------------cCHhhcCCCccccc-
Confidence 4678888998872 23222 456889999996542 3344443 33322
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHHHhcCCCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEA-AEELTRGYVEMRRRGNFPGSS 703 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea-~~~L~~~y~~lR~~~~~~gn~ 703 (806)
+.+..|++...+ +|+..|..... +.+++ ++.++.. ..
T Consensus 351 Ief~~pDe~Tkk----kIf~IHTs~Mt--------------------------l~~dVnle~li~~------kd------ 388 (440)
T KOG0726|consen 351 IEFPLPDEKTKK----KIFQIHTSRMT--------------------------LAEDVNLEELIMT------KD------ 388 (440)
T ss_pred cccCCCchhhhc----eeEEEeecccc--------------------------hhccccHHHHhhc------cc------
Confidence 334445544433 33333332211 22211 1112111 01
Q ss_pred CcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 704 KKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 704 ~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
.+|-..+.++.-.|-.+|.-.-+-.|+.+|+..|.+-+-.+
T Consensus 389 ----dlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 389 ----DLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ----ccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 13446677777777777766668889999999998655443
No 207
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=3.8e-06 Score=84.99 Aligned_cols=146 Identities=22% Similarity=0.227 Sum_probs=84.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc------------ccccceeeeecCC-CCC-ccc---cc-cccc-cc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS------------SAVGLTAYVTKDP-ETG-ETV---LE-SGAL-VL 541 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~------------~~~glta~~~k~~-~~g-e~~---le-~Gal-~l 541 (806)
.+||+|++|+|||++++.+++.+.-..-..+.+. ...++... ..+. ..+ +.. ++ .... ..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRL-EPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEe-ccccCcCCHHHHHHHHHHHccCccc
Confidence 5999999999999999999888632100001100 00001100 0000 000 000 00 0001 12
Q ss_pred cCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch
Q 003637 542 SDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD 621 (806)
Q Consensus 542 Ad~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD 621 (806)
+...+++|||+++|+...++.|+..||+. +..+.+|.++|. ...+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~-------------~~~l~~~i~sr~~ 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPS-------------PEKLLPTIRSRCQ 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECC-------------hHhChHHHHhhcE
Confidence 45679999999999999999999999862 233445555551 1245578888985
Q ss_pred hhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 003637 622 LIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRG 689 (806)
Q Consensus 622 li~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~ 689 (806)
++ ...+++.+.+.+|+... .+++++.++|.+.
T Consensus 149 ~~------------------------------~~~~~~~~~~~~~l~~~------gi~~~~~~~i~~~ 180 (188)
T TIGR00678 149 VL------------------------------PFPPLSEEALLQWLIRQ------GISEEAAELLLAL 180 (188)
T ss_pred Ee------------------------------eCCCCCHHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 33 33445566666666443 2678888887765
No 208
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.32 E-value=5.1e-06 Score=101.42 Aligned_cols=175 Identities=17% Similarity=0.291 Sum_probs=117.9
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCeec-cCC-Ccccc-cceeeeecCCCCCcccccccccccc--CCceeecccc
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYT-SGK-GSSAV-GLTAYVTKDPETGETVLESGALVLS--DRGICCIDEF 552 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~t-~g~-~~~~~-glta~~~k~~~~ge~~le~Gal~lA--d~GIl~IDEi 552 (806)
.+.++||-||+.+|||.++.++++...+.+.- ... ..... -+..++.. .+|...++.|.++.| .|-.+++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd--d~G~lsFkEGvLVeAlR~GyWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD--DDGSLSFKEGVLVEALRRGYWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec--CCCceeeehhHHHHHHhcCcEEEeecc
Confidence 45699999999999999999999998764221 111 11111 11122222 257777888998877 4568999999
Q ss_pred ccCCHHHHHHHHHHHhh-cEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCC
Q 003637 553 DKMSESARSMLHEVMEQ-QTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKAD 631 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~-q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~ 631 (806)
+-.+.+...+|.+.++. +.+.|........-..++.+.||.||..+ |-.++ .|+.++..|| +-..+.|.|
T Consensus 965 NLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK------~LSrAFRNRF-lE~hFddip- 1035 (4600)
T COG5271 965 NLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRK------GLSRAFRNRF-LEMHFDDIP- 1035 (4600)
T ss_pred ccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchH------HHHHHHHhhh-HhhhcccCc-
Confidence 99999999999999975 66777666666677788999999998754 33333 3558888898 332333333
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRR 696 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~ 696 (806)
.+.|..++. -.-.+.+.-.+.|++.|..|+-+
T Consensus 1036 ----------------------------edEle~ILh-----~rc~iapSyakKiVeVyr~Ls~r 1067 (4600)
T COG5271 1036 ----------------------------EDELEEILH-----GRCEIAPSYAKKIVEVYRGLSSR 1067 (4600)
T ss_pred ----------------------------HHHHHHHHh-----ccCccCHHHHHHHHHHHHHhhhh
Confidence 333333322 11236667777788888777653
No 209
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.30 E-value=3.3e-06 Score=88.06 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=101.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccc---cccccccccCCceeeccccccCCH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETV---LESGALVLSDRGICCIDEFDKMSE 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~---le~Gal~lAd~GIl~IDEidkm~~ 557 (806)
...++||+|||||..++.+++.+.+-++ ..+|+... .... +-.|.. ..|..+|+|||++++.
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~-------vfnc~~~~------~~~~l~ril~G~~--~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVV-------VFNCSEQM------DYQSLSRILKGLA--QSGAWLCFDEFNRLSE 98 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EE-------EEETTSSS-------HHHHHHHHHHHH--HHT-EEEEETCCCSSH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEE-------Eecccccc------cHHHHHHHHHHHh--hcCchhhhhhhhhhhH
Confidence 4568999999999999999999966544 33333210 0000 111322 2467899999999999
Q ss_pred HHHHHHH-------HHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCC
Q 003637 558 SARSMLH-------EVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKA 630 (806)
Q Consensus 558 ~~~~~L~-------e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~ 630 (806)
+..+.+. .++..+.-.+.-.|....++..+.+..+.||.... ..+||+.|..-|--+.+ -.|
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~g---------r~~LP~nLk~lFRpvam--~~P 167 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAG---------RSELPENLKALFRPVAM--MVP 167 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCC---------C--S-HHHCTTEEEEE----S-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCC---------cccCCHhHHHHhheeEE--eCC
Confidence 8766554 34444333444568888899999999999987532 45688877666633311 122
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 003637 631 DEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITAT 710 (806)
Q Consensus 631 ~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it 710 (806)
|. ..|++-++-.+ .-.-.....+.|...|..++..- ....++.+.
T Consensus 168 D~---~~I~ei~L~s~----------------------------GF~~a~~La~kl~~l~~l~~~~l----S~q~hydfg 212 (231)
T PF12774_consen 168 DL---SLIAEILLLSQ----------------------------GFKDAKSLAKKLVSLFQLCKEQL----SKQDHYDFG 212 (231)
T ss_dssp -H---HHHHHHHHHCC----------------------------CTSSHHHHHHHHHHHHHHHHHCS-----SSTT---S
T ss_pred CH---HHHHHHHHHHc----------------------------CchhHHHHHHHHHHHHHHHHHhh----ccCcccccc
Confidence 21 23344333211 01123345566666776665532 112345678
Q ss_pred HHHHHHHHHHHHHHHH
Q 003637 711 PRQIESLIRLSEALAR 726 (806)
Q Consensus 711 ~R~Leslirla~a~A~ 726 (806)
.|.+.++++.|..+-|
T Consensus 213 LRalk~vl~~a~~~kr 228 (231)
T PF12774_consen 213 LRALKSVLRMAGSLKR 228 (231)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999876543
No 210
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=6.6e-06 Score=90.18 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=66.8
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee-
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT- 524 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~- 524 (806)
..|+||+.+++.+.-.+-.+. . .+-.||+||+|+||+++|+.+++.+--... .+ ...++.....
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~---~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~---~h~D~~~~~~~ 68 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR---F--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQ-QR---EYVDIIEFKPI 68 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC---C--------CceEEeECCCCCCHHHHHHHHHHHHcCCCC-CC---CCCCeEEeccc
Confidence 357899999998887775542 1 124489999999999999999997521100 00 0111111100
Q ss_pred cCCCCC-ccc---cc-c-ccccccCCceeeccccccCCHHHHHHHHHHHhh
Q 003637 525 KDPETG-ETV---LE-S-GALVLSDRGICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 525 k~~~~g-e~~---le-~-Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
.....+ +.. .+ . -.-..+..-|++||++|+|+...+++|+..||+
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe 119 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE 119 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 000000 000 00 0 011234667999999999999999999999997
No 211
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.3e-06 Score=102.88 Aligned_cols=150 Identities=14% Similarity=0.209 Sum_probs=104.4
Q ss_pred HHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCcc-ccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc
Q 003637 436 IYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASF-RGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS 514 (806)
Q Consensus 436 ~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~-rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~ 514 (806)
.+..|.+.|-..|+|++++..+|..++..... |... ..+..+||.||.|+|||.||++++..+ |-+...+
T Consensus 552 ~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~~~~~awflflGpdgvGKt~lAkaLA~~~----Fgse~~~ 622 (898)
T KOG1051|consen 552 RLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKDPNPDAWFLFLGPDGVGKTELAKALAEYV----FGSEENF 622 (898)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCCCCCCeEEEEECCCchhHHHHHHHHHHHH----cCCccce
Confidence 45667788888999999999999877765421 1111 477899999999999999999999987 4445666
Q ss_pred ccccceeeeecCCCCC---cccc--c----cccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 515 SAVGLTAYVTKDPETG---ETVL--E----SGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 515 ~~~glta~~~k~~~~g---e~~l--e----~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
..+++..+..-....| .|+. + .+++-.-...|+++|||+|..+..++.|+++|+.|.++=. .|....+ .
T Consensus 623 IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~-k 700 (898)
T KOG1051|consen 623 IRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDS-HGREVDF-K 700 (898)
T ss_pred EEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccC-CCcEeec-c
Confidence 6666664211000000 0111 1 1234444568999999999999999999999999999733 2333333 2
Q ss_pred ceEEEEecCCC
Q 003637 586 RTSVLACANPS 596 (806)
Q Consensus 586 ~~siIAAaNp~ 596 (806)
++.||.|+|-.
T Consensus 701 N~I~IMTsn~~ 711 (898)
T KOG1051|consen 701 NAIFIMTSNVG 711 (898)
T ss_pred ceEEEEecccc
Confidence 48899999954
No 212
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-06 Score=90.37 Aligned_cols=99 Identities=24% Similarity=0.280 Sum_probs=60.7
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcc--cccccccccc---CCceeecccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGET--VLESGALVLS---DRGICCIDEFDK 554 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~--~le~Gal~lA---d~GIl~IDEidk 554 (806)
.-++|+|+||||||.++++++... |.++..+-..+++.+. -||- .++- .+..| ...|+||||||.
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~m-------g~nfl~v~ss~lv~ky--iGEsaRlIRe-mf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATM-------GVNFLKVVSSALVDKY--IGESARLIRD-MFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhc-------CCceEEeeHhhhhhhh--cccHHHHHHH-HHHHHhhhCceEEeehhhhh
Confidence 379999999999999999999987 4444444333333221 1221 1110 01111 237999999986
Q ss_pred C-----------CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 555 M-----------SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 555 m-----------~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
. +...|..|.+.++|- -......++-+|.|+|..
T Consensus 237 igGRr~se~Ts~dreiqrTLMeLlnqm--------dgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 237 IGGRRFSEGTSSDREIQRTLMELLNQM--------DGFDTLHRVKTIMATNRP 281 (388)
T ss_pred hccEEeccccchhHHHHHHHHHHHHhh--------ccchhcccccEEEecCCc
Confidence 4 334567777777641 112234678899999944
No 213
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.25 E-value=9.5e-06 Score=84.09 Aligned_cols=165 Identities=20% Similarity=0.237 Sum_probs=89.9
Q ss_pred ccchhhhHHHHh---hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 448 IWELDDVKKGLL---CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 448 I~G~e~vK~~il---l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
++|.+.-|+.|+ .+.+.|.+. .||||.|+.|||||++++++....... ||-.+-+
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G~pa-----------nnvLL~G~rGtGKSSlVkall~~y~~~-----------GLRlIev 86 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQGLPA-----------NNVLLWGARGTGKSSLVKALLNEYADQ-----------GLRLIEV 86 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCC-----------cceEEecCCCCCHHHHHHHHHHHHhhc-----------CceEEEE
Confidence 357777777776 344444222 299999999999999999999876332 3333221
Q ss_pred cCCCCCccccccccc-cccCCceeeccccc-cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC---CCC
Q 003637 525 KDPETGETVLESGAL-VLSDRGICCIDEFD-KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS---GSR 599 (806)
Q Consensus 525 k~~~~ge~~le~Gal-~lAd~GIl~IDEid-km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~---~g~ 599 (806)
....-.....-...+ .....-|+|+|++. ...+..-..|..+||- .....|.++.|.||+|.. ...
T Consensus 87 ~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG---------gle~~P~NvliyATSNRRHLv~E~ 157 (249)
T PF05673_consen 87 SKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEG---------GLEARPDNVLIYATSNRRHLVPES 157 (249)
T ss_pred CHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcC---------ccccCCCcEEEEEecchhhccchh
Confidence 111000000000001 12245799999975 3444455677777763 334568889999999964 111
Q ss_pred CCCCC-------cccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 600 YNPRL-------SVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 600 ~~~~~-------~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
|..+. ...+.++=.-+|.+||-|. +-+-.++.+.=.+|++|...
T Consensus 158 ~~d~~~~~~~eih~~d~~eEklSLsDRFGL~-l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 158 FSDREDIQDDEIHPSDTIEEKLSLSDRFGLW-LSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred hhhccCCCccccCcchHHHHHHhHHHhCCcE-EEecCCCHHHHHHHHHHHHH
Confidence 11111 1111111112455677655 44455555555566666554
No 214
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.3e-06 Score=94.61 Aligned_cols=128 Identities=24% Similarity=0.342 Sum_probs=81.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCH---
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSE--- 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~--- 557 (806)
.-||+||||||||+++-++|+.+.-.+|- ..||. +++ ...++.-.+...++.|++|.+||..-.
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIyd-------LeLt~--v~~----n~dLr~LL~~t~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYD-------LELTE--VKL----DSDLRHLLLATPNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEE-------eeecc--ccC----cHHHHHHHHhCCCCcEEEEeeccccccccc
Confidence 47999999999999999999999777662 22222 221 112444344556788999999996411
Q ss_pred ---------------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cc
Q 003637 558 ---------------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RF 620 (806)
Q Consensus 558 ---------------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RF 620 (806)
-..+.|+.+++ |....--..-.|+.|+|- .-.|.|||++ |.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiD---------GlwSscg~ERIivFTTNh-------------~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLD---------GLWSSCGDERIIVFTTNH-------------KEKLDPALLRPGRM 361 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhc---------cccccCCCceEEEEecCC-------------hhhcCHhhcCCCcc
Confidence 01122333332 211111113467788883 3357799999 99
Q ss_pred hhhhhhccCCChHHHHHHHHHHHH
Q 003637 621 DLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 621 Dli~il~d~~~~~~d~~la~~il~ 644 (806)
|+. +..++...+.-+.||...+.
T Consensus 362 Dmh-I~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 362 DMH-IYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred eeE-EEcCCCCHHHHHHHHHHhcC
Confidence 988 45577777777778777765
No 215
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.16 E-value=3.6e-06 Score=87.39 Aligned_cols=174 Identities=21% Similarity=0.284 Sum_probs=95.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC------CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR------GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr------~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk 554 (806)
+++|+|++|+|||.|++++++.+.+ .+|.+...+...-..+. +. +.+. .-.-.+..--++|||+++.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~--~~---~~~~--~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADAL--RD---GEIE--EFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHH--HT---TSHH--HHHHHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHH--Hc---ccch--hhhhhhhcCCEEEEecchh
Confidence 6999999999999999999886521 12222211111100000 00 1100 0000123445899999999
Q ss_pred CCHHH--HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhh-hccCCC
Q 003637 555 MSESA--RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYL-ILDKAD 631 (806)
Q Consensus 555 m~~~~--~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~i-l~d~~~ 631 (806)
+..+. |..|...++.-. ...-.+|.|++.....+ -.+.+.|.|||.--.+ -...|+
T Consensus 109 l~~~~~~q~~lf~l~n~~~------------~~~k~li~ts~~~P~~l---------~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 109 LAGKQRTQEELFHLFNRLI------------ESGKQLILTSDRPPSEL---------SGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp GTTHHHHHHHHHHHHHHHH------------HTTSEEEEEESS-TTTT---------TTS-HHHHHHHHCSEEEEE----
T ss_pred hcCchHHHHHHHHHHHHHH------------hhCCeEEEEeCCCCccc---------cccChhhhhhHhhcchhhcCCCC
Confidence 98765 777877776521 11233555555333221 1345677788854322 235555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCH
Q 003637 632 EQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATP 711 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~ 711 (806)
.+....++++... .....+++++.++|.+.+ + -++
T Consensus 168 ~~~r~~il~~~a~----------------------------~~~~~l~~~v~~~l~~~~---------~--------~~~ 202 (219)
T PF00308_consen 168 DEDRRRILQKKAK----------------------------ERGIELPEEVIEYLARRF---------R--------RDV 202 (219)
T ss_dssp HHHHHHHHHHHHH----------------------------HTT--S-HHHHHHHHHHT---------T--------SSH
T ss_pred HHHHHHHHHHHHH----------------------------HhCCCCcHHHHHHHHHhh---------c--------CCH
Confidence 5555444444332 233459999999998763 1 238
Q ss_pred HHHHHHHHHHHHHHHH
Q 003637 712 RQIESLIRLSEALARI 727 (806)
Q Consensus 712 R~Leslirla~a~A~l 727 (806)
|+|+.++....+.+.+
T Consensus 203 r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 203 RELEGALNRLDAYAQL 218 (219)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999888887764
No 216
>PHA01747 putative ATP-dependent protease
Probab=98.16 E-value=1.5e-05 Score=86.16 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred HHHHHHhhcccccchh-hhHH--HHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCC
Q 003637 437 YETLTRSLAPNIWELD-DVKK--GLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG 513 (806)
Q Consensus 437 ~~~l~~si~P~I~G~e-~vK~--~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~ 513 (806)
++.|+.|+--+--++. ..|. .+|.-|+.-++- +. ...+.|++=.||.|||||.+.+.+..++|.++ +|..
T Consensus 150 iDlLlrSiGyeP~~~~~r~k~~~l~L~RLiPlVE~--~~---~~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~ 222 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIRNDAVNRLTLPRLLPLFTS--PV---SKRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEP 222 (425)
T ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhhhheec--cC---CCCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCC
Confidence 6777777653333332 2233 555555544321 11 12567999999999999999999999898886 5666
Q ss_pred cccccceeeeecCCCCCccccccccccccCCceeeccccccCC----HHHHHHHHHHHhhcEEEEeecceee--eecCce
Q 003637 514 SSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS----ESARSMLHEVMEQQTVSIAKAGIIA--SLNART 587 (806)
Q Consensus 514 ~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~----~~~~~~L~e~Me~q~isi~kag~~~--~l~~~~ 587 (806)
.+.+.|-.-. .+ -..|.+.+.| ++++|||..+. .+....|...||++.++-.+..... +.++.+
T Consensus 223 ~TvA~LFyN~----~t----~~~GLVg~~D--~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~a 292 (425)
T PHA01747 223 PTYANLVYDA----KT----NALGLVFLSN--GLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCI 292 (425)
T ss_pred CchHHheEec----CC----CceeEEeecc--EEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccce
Confidence 6666665321 11 2346555555 68999999865 3456777788999998844332233 677889
Q ss_pred EEEEecCCC
Q 003637 588 SVLACANPS 596 (806)
Q Consensus 588 siIAAaNp~ 596 (806)
+++.+.|+.
T Consensus 293 siVf~GNin 301 (425)
T PHA01747 293 PIIFAGNPD 301 (425)
T ss_pred eEEEecCCC
Confidence 999999976
No 217
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8e-06 Score=86.36 Aligned_cols=136 Identities=21% Similarity=0.284 Sum_probs=83.3
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCC----cccccceeeeecCCCCCccccccccccc----------
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG----SSAVGLTAYVTKDPETGETVLESGALVL---------- 541 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~----~~~~glta~~~k~~~~ge~~le~Gal~l---------- 541 (806)
+.-+-=|||.||||||||+|.+++|+.+.-. +.++- ...++.... -..|.-|.|.++.
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~~liEinshsL------FSKWFsESgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKGQLIEINSHSL------FSKWFSESGKLVAKMFQKIQELV 245 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccceEEEEehhHH------HHHHHhhhhhHHHHHHHHHHHHH
Confidence 4444568999999999999999999987422 22221 111222211 2346666665432
Q ss_pred cCCc---eeeccccccCCHH---------------HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCC
Q 003637 542 SDRG---ICCIDEFDKMSES---------------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPR 603 (806)
Q Consensus 542 Ad~G---Il~IDEidkm~~~---------------~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~ 603 (806)
.+.| .++|||++.+... .-++|+.-|++=. -..++.++||+|-.
T Consensus 246 ~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~NvliL~TSNl~------- 307 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPNVLILATSNLT------- 307 (423)
T ss_pred hCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEeccchH-------
Confidence 1333 3569999876432 1245666565411 12458899999832
Q ss_pred CcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 604 LSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 604 ~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
-.|.-++.+|-|+.+. ..+|..+-...|.+..+.
T Consensus 308 ------~siD~AfVDRADi~~y-VG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 308 ------DSIDVAFVDRADIVFY-VGPPTAEAIYEILKSCIE 341 (423)
T ss_pred ------HHHHHHhhhHhhheee-cCCccHHHHHHHHHHHHH
Confidence 2455788999998854 477777766666655544
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.14 E-value=1.7e-06 Score=81.04 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=58.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec------------CC--CCCccccccccccccCC-
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK------------DP--ETGETVLESGALVLSDR- 544 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k------------~~--~~ge~~le~Gal~lAd~- 544 (806)
.+++|+|+||||||++++.++..+.... .....+........ +. ..+....+ ..+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhc
Confidence 3899999999999999999999986641 11111122111100 00 01111111 23333333
Q ss_pred --ceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 545 --GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 545 --GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
.+++|||++.+.......+...... ..............+|+++|.
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC
Confidence 8999999999988776654432110 000001112345789999995
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.11 E-value=3.7e-06 Score=92.16 Aligned_cols=139 Identities=22% Similarity=0.217 Sum_probs=81.2
Q ss_pred ccchhhhHHHHhhhhcCCccccCCCCCccccccc-eEEECCCCChHHHHHHHHHHHCCCCeecc---------------C
Q 003637 448 IWELDDVKKGLLCQLFGGNALKLPSGASFRGDIN-ILLVGDPGTSKSQLLQYIHKLSPRGIYTS---------------G 511 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~in-vLLvG~PGtGKS~la~~ia~~~pr~~~t~---------------g 511 (806)
++|++.+...++....... +. .| +||+||||+|||++|.++++.+.-..... |
T Consensus 3 ~~~~~~~~~~l~~~~~~~~--~~---------~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG--RL---------PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred cccchhHHHHHHHHHHhcC--CC---------CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 4566666555554443211 11 26 99999999999999999999874221100 0
Q ss_pred CCcccccceeeeecCCCCCccccc----ccccc--ccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecC
Q 003637 512 KGSSAVGLTAYVTKDPETGETVLE----SGALV--LSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNA 585 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~le----~Gal~--lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~ 585 (806)
......-+++...+......-.++ ..... ....-|++|||+|.|+.+.+++|+..||+. +.
T Consensus 72 ~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~~ 138 (325)
T COG0470 72 NHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------PK 138 (325)
T ss_pred CCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CC
Confidence 111112222221111000000000 01111 134469999999999999999999999984 45
Q ss_pred ceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 586 RTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 586 ~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
++.+|.+||. .-.+.+++.||+-.+
T Consensus 139 ~~~~il~~n~-------------~~~il~tI~SRc~~i 163 (325)
T COG0470 139 NTRFILITND-------------PSKILPTIRSRCQRI 163 (325)
T ss_pred CeEEEEEcCC-------------hhhccchhhhcceee
Confidence 5778888881 234556888998555
No 220
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=1.4e-05 Score=89.18 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=38.0
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHC
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.|+||+.+++.+.-.+..+. ++ +-+||+||+|+||+++|.++++.+
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r---l~--------HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR---LH--------HAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hccChHHHHHHHHHHHHcCC---CC--------ceEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999987776652 11 238999999999999999999887
No 221
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.08 E-value=6.1e-05 Score=80.00 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=54.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCc-----ccccc--cccc-ccCCceeecccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGE-----TVLES--GALV-LSDRGICCIDEF 552 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge-----~~le~--Gal~-lAd~GIl~IDEi 552 (806)
|.|++||||||||....++++.+... .+..+-..-+.++..++...-. +..-. -.+. .+.-..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecch
Confidence 99999999999999999999888553 1222223333333322221000 00000 0011 122357899999
Q ss_pred ccCCHHHHHHHHHHHhhcE
Q 003637 553 DKMSESARSMLHEVMEQQT 571 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~q~ 571 (806)
|.|..++|++|.++.|+-+
T Consensus 141 DaMT~~AQnALRRviek~t 159 (360)
T KOG0990|consen 141 DAMTRDAQNALRRVIEKYT 159 (360)
T ss_pred hHhhHHHHHHHHHHHHHhc
Confidence 9999999999999888643
No 222
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=1.2e-05 Score=88.74 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=79.9
Q ss_pred cccc-hhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCe----eccCCC--------
Q 003637 447 NIWE-LDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI----YTSGKG-------- 513 (806)
Q Consensus 447 ~I~G-~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~----~t~g~~-------- 513 (806)
.|+| |+.+++.+.-.+-.+. .+ +-.||+||+|+||+++|+.+++.+--.. ..+|.-
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~---l~--------ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR---LS--------HAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC---CC--------ceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 3456 8888887765554441 11 2349999999999999999998863210 000100
Q ss_pred cccccceeeeecCCCCCccccc---c--ccc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeec
Q 003637 514 SSAVGLTAYVTKDPETGETVLE---S--GAL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLN 584 (806)
Q Consensus 514 ~~~~glta~~~k~~~~ge~~le---~--Gal----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~ 584 (806)
....++... .+.+.....+ . ..+ ..+...|++|||+++|+...+++|+..||+- +
T Consensus 75 ~~hpD~~~i---~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p 138 (329)
T PRK08058 75 GNHPDVHLV---APDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-------------S 138 (329)
T ss_pred CCCCCEEEe---ccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------C
Confidence 000011111 0011101000 0 000 2345679999999999999999999999972 2
Q ss_pred CceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 585 ARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 585 ~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
..+.+|.+++ ....|.+++.||+-.+
T Consensus 139 ~~~~~Il~t~-------------~~~~ll~TIrSRc~~i 164 (329)
T PRK08058 139 GGTTAILLTE-------------NKHQILPTILSRCQVV 164 (329)
T ss_pred CCceEEEEeC-------------ChHhCcHHHHhhceee
Confidence 3344555554 1335778999998544
No 223
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.06 E-value=6.4e-05 Score=78.77 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=122.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
-.||.||+|-=|+..=..+.... -+|.-+..+ .--.|++||||++.++-+.-
T Consensus 254 lALFsGdTGEIr~EvRdqin~KV--------------------------~eWreEGKA--eivpGVLFIDEvHMLDIEcF 305 (454)
T KOG2680|consen 254 LALFSGDTGEIRSEVRDQINTKV--------------------------AEWREEGKA--EIVPGVLFIDEVHMLDIECF 305 (454)
T ss_pred EEEEeCCcccccHHHHHHHHHHH--------------------------HHHHhcCCe--eeccceEEEeeehhhhhHHH
Confidence 57899999998887765554332 144443221 11258999999999999999
Q ss_pred HHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHH
Q 003637 561 SMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAK 640 (806)
Q Consensus 561 ~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~ 640 (806)
+.|..++|.-.- ..++.|+|..-.+-+..... ....+|-.|++|. ||+
T Consensus 306 sFlNrAlE~d~~--------------PiiimaTNrgit~iRGTn~~-SphGiP~D~lDR~-lII---------------- 353 (454)
T KOG2680|consen 306 SFLNRALENDMA--------------PIIIMATNRGITRIRGTNYR-SPHGIPIDLLDRM-LII---------------- 353 (454)
T ss_pred HHHHHHhhhccC--------------cEEEEEcCCceEEeecCCCC-CCCCCcHHHhhhh-hee----------------
Confidence 999999997421 34667777653332211111 2567888999997 331
Q ss_pred HHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHH
Q 003637 641 HIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 720 (806)
Q Consensus 641 ~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirl 720 (806)
...+++.+++++++..-.+.....++++|.++|...- ...++|....||-.
T Consensus 354 -------------~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~----------------~~tsLRYai~Lit~ 404 (454)
T KOG2680|consen 354 -------------STQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIG----------------EATSLRYAIHLITA 404 (454)
T ss_pred -------------ecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhh----------------hhhhHHHHHHHHHH
Confidence 2234455555555554433344579999999998662 11358998999999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 003637 721 SEALARIRLSELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 721 a~a~A~l~~~~~V~~~Dv~~ai~l~~~ 747 (806)
|...|.-+....|+.+|+..|.+||-.
T Consensus 405 a~~~~~krk~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 405 ASLVCLKRKGKVVEVDDIERVYRLFLD 431 (454)
T ss_pred HHHHHHHhcCceeehhHHHHHHHHHhh
Confidence 888888888999999999999999854
No 224
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.06 E-value=0.00028 Score=82.21 Aligned_cols=134 Identities=22% Similarity=0.325 Sum_probs=90.8
Q ss_pred ChhHHHHHHHhhc--ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc
Q 003637 433 QPNIYETLTRSLA--PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS 510 (806)
Q Consensus 433 ~~~~~~~l~~si~--P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~ 510 (806)
..+..+.|+.|+- |+-+.. ..|..+|+-|+.-+.+ +.|++=.||.|||||.+-+ +++|.+...+
T Consensus 179 ~dEWid~LlrSiG~eP~~~~~-r~K~~~L~RliPlVE~----------N~Nl~ELgPrgTGKS~~y~---eiSp~~~liS 244 (675)
T TIGR02653 179 SDEWIDVLLRSVGMEPTNLER-RTKWHLLTRLIPLVEN----------NYNLCELGPRGTGKSHVYK---ECSPNSILMS 244 (675)
T ss_pred HHHHHHHHHHhcCCCccccCH-HHHHHHHHhhhhhccc----------ccceEEECCCCCCcceeee---ccCCceEEEE
Confidence 3445677777754 444433 5677777777766544 3599999999999999877 6778888888
Q ss_pred CCCcccccceeeeecCCCCCccccccccccccCCceeeccccccC---CHHHHHHHHHHHhhcEEEEeecceeeeecCce
Q 003637 511 GKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKM---SESARSMLHEVMEQQTVSIAKAGIIASLNART 587 (806)
Q Consensus 511 g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm---~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~ 587 (806)
|...+.+.|-.-.. .-..|.+-.-| ++|+||+..+ +++..+.|-..|+.|.++ +++ .+..+.+
T Consensus 245 GG~~T~A~LFyn~~--------~~~~GlVg~~D--~VaFDEva~i~f~d~d~v~imK~YM~sG~Fs--RG~--~~~~a~a 310 (675)
T TIGR02653 245 GGQTTVANLFYNMS--------TRQIGLVGMWD--VVAFDEVAGIEFKDKDGVQIMKDYMASGSFA--RGK--ESIEGKA 310 (675)
T ss_pred CCccchhHeeEEcC--------CCceeEEeecc--EEEEeeccccccCCHHHHHHHHHHhhcCccc--ccc--cccccce
Confidence 88777777764321 11345544434 7899999865 344556777889999987 444 3445666
Q ss_pred EEEEecC
Q 003637 588 SVLACAN 594 (806)
Q Consensus 588 siIAAaN 594 (806)
+++.-.|
T Consensus 311 s~vfvGN 317 (675)
T TIGR02653 311 SIVFVGN 317 (675)
T ss_pred eEEEEcc
Confidence 6666555
No 225
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.04 E-value=2.3e-05 Score=77.41 Aligned_cols=136 Identities=20% Similarity=0.252 Sum_probs=76.0
Q ss_pred chhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc---CCC--------ccccc
Q 003637 450 ELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS---GKG--------SSAVG 518 (806)
Q Consensus 450 G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~---g~~--------~~~~g 518 (806)
||+.+++.+.-.+-.+ +.+ +.+||+|++|+||+++|+++++.+--..... +.- .....
T Consensus 1 gq~~~~~~L~~~~~~~---~l~--------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG---RLP--------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT---C----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC---Ccc--------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6777777776555544 111 2479999999999999999998863221100 000 00011
Q ss_pred ceeeeecCCCCCcccccc---------ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEE
Q 003637 519 LTAYVTKDPETGETVLES---------GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSV 589 (806)
Q Consensus 519 lta~~~k~~~~ge~~le~---------Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~si 589 (806)
+... ..+........+. -.-..+..-|++|||+|+|+...+++|+..||+- +..+.+
T Consensus 70 ~~~~-~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~f 135 (162)
T PF13177_consen 70 FIII-KPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYF 135 (162)
T ss_dssp EEEE-ETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEE
T ss_pred eEEE-ecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEE
Confidence 1111 0000000111000 0011134569999999999999999999999983 345556
Q ss_pred EEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 590 LACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 590 IAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
|-.++ ..-.|.++++||+-.+
T Consensus 136 iL~t~-------------~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 136 ILITN-------------NPSKILPTIRSRCQVI 156 (162)
T ss_dssp EEEES--------------GGGS-HHHHTTSEEE
T ss_pred EEEEC-------------ChHHChHHHHhhceEE
Confidence 65555 2446789999998443
No 226
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=2.7e-05 Score=85.23 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=82.3
Q ss_pred ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCC-------ccccc
Q 003637 446 PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG-------SSAVG 518 (806)
Q Consensus 446 P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~-------~~~~g 518 (806)
..|+||+.++..+.-++-.+. -.+..||+||+|+||+.+|.++++.+--.- .+|.- ...-+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----------IAPAYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCCC
Confidence 468899999998887666551 124899999999999999999988862210 01100 00000
Q ss_pred ceeee----ecCC--------CCC-------ccccc--------cc-cccccCCceeeccccccCCHHHHHHHHHHHhhc
Q 003637 519 LTAYV----TKDP--------ETG-------ETVLE--------SG-ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQ 570 (806)
Q Consensus 519 lta~~----~k~~--------~~g-------e~~le--------~G-al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q 570 (806)
+.... ..+. ..| ...++ .. .-..+...|++||+.++|+...+++|+..||+-
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 00000 0000 000 00000 00 012345679999999999999999999999972
Q ss_pred EEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 571 TVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 571 ~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
+ ++.+|..++. .-.|.+++.||+..+
T Consensus 152 -------------p-~~~fILi~~~-------------~~~Ll~TI~SRcq~i 177 (314)
T PRK07399 152 -------------G-NGTLILIAPS-------------PESLLPTIVSRCQII 177 (314)
T ss_pred -------------C-CCeEEEEECC-------------hHhCcHHHHhhceEE
Confidence 2 3334444431 235668999998544
No 227
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.00 E-value=4.7e-05 Score=87.53 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=68.0
Q ss_pred ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC-CCCCCCCcccccccCCcc
Q 003637 537 GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG-SRYNPRLSVIENIHLPPT 615 (806)
Q Consensus 537 Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~-g~~~~~~~~~~~i~lp~~ 615 (806)
|+|..|++|++=+=|+-|.+.+....|+.+-+++.|. ..+....++.+-.|||.+|-.+ ..|. +-.-.++
T Consensus 249 G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~--~~~~~~~i~~D~vIiaHsNE~E~~~F~-------~nk~nEA 319 (644)
T PRK15455 249 GGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYN--GTEGIGAIPFDGIILAHSNESEWQTFR-------NNKNNEA 319 (644)
T ss_pred chhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCccc--CCCCcceeccceeEEecCCHHHHHHHh-------cCccchh
Confidence 8899999888766699999999999999999999885 2244456788899999999653 2222 3334478
Q ss_pred ccCcchhhhhhccCCChHHHHHHHHHHHHh
Q 003637 616 LLSRFDLIYLILDKADEQTDRRLAKHIVSL 645 (806)
Q Consensus 616 LlsRFDli~il~d~~~~~~d~~la~~il~~ 645 (806)
+++|.-++ -+.=...-.+..+|.+.+++.
T Consensus 320 ~~DRi~~V-~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 320 FLDRIYIV-KVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhceEEEE-eCCccCChhHHHHHHHHHhcC
Confidence 88997332 111112233445677766654
No 228
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00014 Score=80.00 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=67.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC----eeccCC--------CcccccceeeeecCCCCCccccc---c--ccc----
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG----IYTSGK--------GSSAVGLTAYVTKDPETGETVLE---S--GAL---- 539 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~----~~t~g~--------~~~~~glta~~~k~~~~ge~~le---~--Gal---- 539 (806)
-+||.||+|+||+++|+.+++.+--. .-.+|. ..+.-++... ..+..+....++ . ..+
T Consensus 24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i-~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVL-EPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-eccCCCCCCCHHHHHHHHHHHhhcc
Confidence 58999999999999999999987321 000110 0000011101 000000000000 0 001
Q ss_pred cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCc
Q 003637 540 VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSR 619 (806)
Q Consensus 540 ~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsR 619 (806)
..+..-|++|||+|+|+...+++|+..||+- +..+.+|.+++ ....|+++++||
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~-------------~~~~ll~TI~SR 156 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISH-------------QPSRLLPTIKSR 156 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEEC-------------ChhhCcHHHHhh
Confidence 1234569999999999999999999999982 23344555544 134577999999
Q ss_pred chhh
Q 003637 620 FDLI 623 (806)
Q Consensus 620 FDli 623 (806)
+-.+
T Consensus 157 c~~~ 160 (328)
T PRK05707 157 CQQQ 160 (328)
T ss_pred ceee
Confidence 9654
No 229
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00019 Score=80.24 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=109.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccc--ccc-----ccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLE--SGA-----LVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le--~Ga-----l~lAd~GIl~IDEid 553 (806)
+++|+|+.|.|||.|++++...+-.. +...-.+.+++. .+..+++.. .+. -.. .--++|||+++
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~----~~~a~v~y~~se----~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq 185 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALAN----GPNARVVYLTSE----DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQ 185 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhh----CCCceEEeccHH----HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHh
Confidence 89999999999999999999887332 111111112110 000000000 000 001 33589999999
Q ss_pred cCCHH--HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhh-ccCC
Q 003637 554 KMSES--ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLI-LDKA 630 (806)
Q Consensus 554 km~~~--~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il-~d~~ 630 (806)
.+..+ .|..+....+.=. ...-.|+.|+...+.. --.+.+.|.|||.--.+. ...|
T Consensus 186 ~l~gk~~~qeefFh~FN~l~------------~~~kqIvltsdr~P~~---------l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALL------------ENGKQIVLTSDRPPKE---------LNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred HhcCChhHHHHHHHHHHHHH------------hcCCEEEEEcCCCchh---------hccccHHHHHHHhceeEEeeCCC
Confidence 87654 3555555443210 0011355555433321 122447788999765322 2344
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 003637 631 DEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITAT 710 (806)
Q Consensus 631 ~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it 710 (806)
+.+....+... ........+++++.++|.+.. .. +
T Consensus 245 d~e~r~aiL~k----------------------------ka~~~~~~i~~ev~~~la~~~---------~~--------n 279 (408)
T COG0593 245 DDETRLAILRK----------------------------KAEDRGIEIPDEVLEFLAKRL---------DR--------N 279 (408)
T ss_pred CHHHHHHHHHH----------------------------HHHhcCCCCCHHHHHHHHHHh---------hc--------c
Confidence 44433333322 112234579999999998752 12 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHHH
Q 003637 711 PRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVA 748 (806)
Q Consensus 711 ~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~~~s 748 (806)
+|+|+..+...-+.|....+ .+|..-+.++++.+...
T Consensus 280 vReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 280 VRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 89999999887888877655 78988888888777654
No 230
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.73 E-value=0.00031 Score=71.99 Aligned_cols=114 Identities=24% Similarity=0.261 Sum_probs=73.0
Q ss_pred ccchhhhHHHHh---hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee
Q 003637 448 IWELDDVKKGLL---CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT 524 (806)
Q Consensus 448 I~G~e~vK~~il---l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~ 524 (806)
|.|.+..|.+++ .+++.|...+ ||||.|.-|||||.|.|++...... .|+... +
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pAN-----------nVLLwGaRGtGKSSLVKA~~~e~~~-----------~glrLV-E 118 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPAN-----------NVLLWGARGTGKSSLVKALLNEYAD-----------EGLRLV-E 118 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCccc-----------ceEEecCCCCChHHHHHHHHHHHHh-----------cCCeEE-E
Confidence 569999999888 5566664333 9999999999999999999987622 122211 1
Q ss_pred cCCCCCcccccc----ccc-cccCCceeeccccc-cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 525 KDPETGETVLES----GAL-VLSDRGICCIDEFD-KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 525 k~~~~ge~~le~----Gal-~lAd~GIl~IDEid-km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
-+. +-...- +.+ ....+-|+|.|++- .-.++...+|..+||- ....-+.++.+.||+|..
T Consensus 119 V~k---~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG---------~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 119 VDK---EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG---------GVEGRPANVLFYATSNRR 184 (287)
T ss_pred EcH---HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC---------CcccCCCeEEEEEecCCc
Confidence 110 101110 111 12345699999874 2334456677778873 334467889999999964
No 231
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.69 E-value=0.00022 Score=84.44 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=33.5
Q ss_pred cccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
++.||+.....+.-.+....... ..+ --++|+||||+|||++++.+++.+..
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~------~~~-~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLEN------APK-RILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhccccc------CCC-cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45677776555443333321100 011 13899999999999999999998754
No 232
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00058 Score=79.84 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=84.3
Q ss_pred CCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccc----------cccccc
Q 003637 471 PSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVL----------ESGALV 540 (806)
Q Consensus 471 ~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~l----------e~Gal~ 540 (806)
+.+.....+.-+||.|+||+||+++.+++++.+...+|. +.|...+...+..-+..+ .+--+.
T Consensus 423 ~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e-------vdc~el~~~s~~~~etkl~~~f~~a~~~~pavif 495 (953)
T KOG0736|consen 423 PSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLE-------VDCYELVAESASHTETKLQAIFSRARRCSPAVLF 495 (953)
T ss_pred cchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEe-------ccHHHHhhcccchhHHHHHHHHHHHhhcCceEEE
Confidence 334445566789999999999999999999999776553 222222211111111111 122223
Q ss_pred ccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcc
Q 003637 541 LSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 541 lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRF 620 (806)
+.+--++-||-..-.+-..+..++..|+.-- ...-...+.++|+++.. -++|+.+.+-|
T Consensus 496 l~~~dvl~id~dgged~rl~~~i~~~ls~e~--------~~~~~~~~ivv~t~~s~-------------~~lp~~i~~~f 554 (953)
T KOG0736|consen 496 LRNLDVLGIDQDGGEDARLLKVIRHLLSNED--------FKFSCPPVIVVATTSSI-------------EDLPADIQSLF 554 (953)
T ss_pred EeccceeeecCCCchhHHHHHHHHHHHhccc--------ccCCCCceEEEEecccc-------------ccCCHHHHHhh
Confidence 3333333344444223333444554444110 11112347788888833 35778887777
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHhh
Q 003637 621 DLIYLILDKADEQTDRRLAKHIVSLH 646 (806)
Q Consensus 621 Dli~il~d~~~~~~d~~la~~il~~~ 646 (806)
+.-+..+.+++++..++.+.+++.+
T Consensus 555 -~~ei~~~~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 555 -LHEIEVPALSEEQRLEILQWYLNHL 579 (953)
T ss_pred -hhhccCCCCCHHHHHHHHHHHHhcc
Confidence 5556678889999988888887643
No 233
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.4e-05 Score=86.22 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=22.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
.|||+||||||||.+||.|-+.+.
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLN 281 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLN 281 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhc
Confidence 699999999999999999999984
No 234
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=97.55 E-value=0.0049 Score=67.45 Aligned_cols=242 Identities=21% Similarity=0.251 Sum_probs=145.5
Q ss_pred chhh-hHHHHhhhhcCCccccCCCCCccccccceEEECCCCC--hHHHHHHHHHHHCCCCeeccCCCccccccee---ee
Q 003637 450 ELDD-VKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGT--SKSQLLQYIHKLSPRGIYTSGKGSSAVGLTA---YV 523 (806)
Q Consensus 450 G~e~-vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGt--GKS~la~~ia~~~pr~~~t~g~~~~~~glta---~~ 523 (806)
|.++ +-.-+++.|++.+..+. ....-|...+=|++=|-- --|+|-+.+..++|++++. +.+...+.. ..
T Consensus 281 g~d~iAAeyLllhLlStV~~R~--d~l~iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~---pmtie~lNta~f~P 355 (543)
T KOG2545|consen 281 GNDNIAAEYLLLHLLSTVYHRT--DGLVIGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQ---PMTIEELNTAPFYP 355 (543)
T ss_pred cCchHHHHHHHHHHHHHhhccc--cceEeeeeEEeecCCCchhHHHHHHHHHHHHhchhhhee---eeeHHhhcccCccc
Confidence 4343 44455566666543322 112234445555554443 5567778888888887653 222222221 22
Q ss_pred ecCCCCCccccccccccccCCceeecccccc-------CCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 524 TKDPETGETVLESGALVLSDRGICCIDEFDK-------MSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 524 ~k~~~~ge~~le~Gal~lAd~GIl~IDEidk-------m~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
.+|. +...+.+|.+.+|++-.++|||=.. ..-..-+.|-..+++|.+...-.--...+.+++.++..+-
T Consensus 356 kkDy--etNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSe-- 431 (543)
T KOG2545|consen 356 KKDY--ETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSE-- 431 (543)
T ss_pred cccc--cccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeC--
Confidence 3332 2335778999999999999999642 2233456788889999887543333455667777776553
Q ss_pred CCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCC
Q 003637 597 GSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHP 676 (806)
Q Consensus 597 ~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p 676 (806)
|| + -||..+-=|.+ .+.++. . ....+-+...++.|+..+|. ..-
T Consensus 432 -Gr-----s-----ilPADl~i~lq-----p~~v~~------------l-------e~~tps~l~q~rcyltt~r~-l~~ 475 (543)
T KOG2545|consen 432 -GR-----S-----ILPADLGIRLQ-----PDSVDT------------L-------EFPTPSDLLQFRCYLTTMRN-LRA 475 (543)
T ss_pred -Cc-----c-----cCcccccccCC-----CCCCCc------------c-------ccCChhHHHHHHHHHHHHHh-hcc
Confidence 33 1 11211111100 000000 0 01112234566777777775 455
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 003637 677 KLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 677 ~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l~ 745 (806)
.+++|..+++.+-|+.||+.+... ....|..++-.|..+++-.++.+++.+|...|.++-
T Consensus 476 nIsee~t~~iq~dfV~mRq~n~~s---------naddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele 535 (543)
T KOG2545|consen 476 NISEEMTDYIQSDFVSMRQYNKES---------NADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELE 535 (543)
T ss_pred CccHHHHHHHHHHHHHHHhhCccc---------chhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 799999999999999999975322 256788888888889999999999999999887764
No 235
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00058 Score=83.27 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=57.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCC-CCCccccccc-----cccccC---Cceeeccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDP-ETGETVLESG-----ALVLSD---RGICCIDE 551 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~-~~ge~~le~G-----al~lAd---~GIl~IDE 551 (806)
.||+.|+||||||.+|++++....++ +.. .+....+++ --+.|+.++. .+..|. -.|+|.||
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~----~~k-----isffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffde 371 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRG----NRK-----ISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDE 371 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhccc----ccc-----cchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccc
Confidence 59999999999999999999988764 110 000111111 1234554431 122332 36999999
Q ss_pred cccCCHH-----------HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 552 FDKMSES-----------ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 552 idkm~~~-----------~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
||-+.+. ....|+..|.- .. -...+.||+|+|...
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdG---------ld--sRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDG---------LD--SRGQVVVIGATNRPD 417 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccC---------CC--CCCceEEEcccCCcc
Confidence 9955442 23455555542 11 123488999999653
No 236
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0023 Score=70.22 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=66.4
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCC----CeeccCCC--------cccccceeeeecCCCCCc-cc---ccc--cc---
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGKG--------SSAVGLTAYVTKDPETGE-TV---LES--GA--- 538 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~~--------~~~~glta~~~k~~~~ge-~~---le~--Ga--- 538 (806)
+-.||.|++|+||+++|+.+++.+-= ..-.+|.= .+.-++... .+..|. .. ++. ..
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---EPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE---ccccCCCCCHHHHHHHHHHHhh
Confidence 36779999999999999999988721 10011110 000011101 011111 00 000 00
Q ss_pred -ccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCcccc
Q 003637 539 -LVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLL 617 (806)
Q Consensus 539 -l~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Ll 617 (806)
-..+...|++||+.|+|+...+++|+..||+- +..+.+|-.++ ....|+++++
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~-------------~~~~llpTI~ 155 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQAD-------------LSAALLPTIY 155 (325)
T ss_pred ccccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEEC-------------ChHhCchHHH
Confidence 11234469999999999999999999999982 23333444433 1346778999
Q ss_pred Ccchhh
Q 003637 618 SRFDLI 623 (806)
Q Consensus 618 sRFDli 623 (806)
||+-.+
T Consensus 156 SRC~~~ 161 (325)
T PRK06871 156 SRCQTW 161 (325)
T ss_pred hhceEE
Confidence 998444
No 237
>PRK12377 putative replication protein; Provisional
Probab=97.47 E-value=6.3e-05 Score=79.37 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=57.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeee--cCCC-CCccccccccccccCCceeecccc--cc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT--KDPE-TGETVLESGALVLSDRGICCIDEF--DK 554 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~--k~~~-~ge~~le~Gal~lAd~GIl~IDEi--dk 554 (806)
.+++|.|+||||||+||.++++.+... |.....+....... +... .++. ...-.-.+..--+++|||| ..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~----g~~v~~i~~~~l~~~l~~~~~~~~~-~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK----GRSVIVVTVPDVMSRLHESYDNGQS-GEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEEEHHHHHHHHHHHHhccch-HHHHHHHhcCCCEEEEcCCCCCC
Confidence 389999999999999999999987432 11111010000000 0000 0100 0000011244569999999 45
Q ss_pred CCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 555 MSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 555 m~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
.++..+..|+++++.+. .....+|.++|-.
T Consensus 177 ~s~~~~~~l~~ii~~R~------------~~~~ptiitSNl~ 206 (248)
T PRK12377 177 ETKNEQVVLNQIIDRRT------------ASMRSVGMLTNLN 206 (248)
T ss_pred CCHHHHHHHHHHHHHHH------------hcCCCEEEEcCCC
Confidence 67778889999998753 2234567778844
No 238
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.47 E-value=0.00021 Score=77.93 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=67.8
Q ss_pred ccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCC-CCCCCCcccccccCCcc
Q 003637 537 GALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGS-RYNPRLSVIENIHLPPT 615 (806)
Q Consensus 537 Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g-~~~~~~~~~~~i~lp~~ 615 (806)
|.+..|++|++=+-|+-|.+.+....||.+.+++.+... +....++.+..|||.+|+.+- .|. +..--++
T Consensus 227 G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~-------~~~~~eA 297 (358)
T PF08298_consen 227 GELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFK-------NNKNNEA 297 (358)
T ss_pred cHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHh-------ccccchh
Confidence 889999999998889999999999999999999998642 334457888999999997642 222 2222378
Q ss_pred ccCcchhhhhhccCCChHHHHHHHHHHHH
Q 003637 616 LLSRFDLIYLILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 616 LlsRFDli~il~d~~~~~~d~~la~~il~ 644 (806)
+.+|+.++-+ .=..+-..+.+|.+.++.
T Consensus 298 f~DRi~~I~V-PY~L~~s~E~kIY~k~~~ 325 (358)
T PF08298_consen 298 FKDRIEVIKV-PYCLRVSEEVKIYEKLIG 325 (358)
T ss_pred hhhheEEEec-cccCCHHHHHHHHHHHhh
Confidence 9999855522 111233344455555543
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.44 E-value=0.0017 Score=69.66 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=41.2
Q ss_pred HHHHhhcccccchhhhHHHHh--hhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 439 TLTRSLAPNIWELDDVKKGLL--CQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 439 ~l~~si~P~I~G~e~vK~~il--l~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|..--.|--+|+...+.++- -.|+....+... .++||+||+|.|||++++...+.-|..
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rm--------p~lLivG~snnGKT~Ii~rF~~~hp~~ 88 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRM--------PNLLIVGDSNNGKTMIIERFRRLHPPQ 88 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCC--------CceEEecCCCCcHHHHHHHHHHHCCCC
Confidence 444444666778888887665 333433211111 289999999999999999999987653
No 240
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.42 E-value=0.011 Score=62.11 Aligned_cols=72 Identities=14% Similarity=0.324 Sum_probs=53.3
Q ss_pred ceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY 624 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~ 624 (806)
.+++|.|.|++..++|.+|...||. +...|++|-.+|. .-.+-+++.||+ ++
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-------------Ys~~~RlIl~cns-------------~SriIepIrSRC--l~ 180 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEK-------------YSSNCRLILVCNS-------------TSRIIEPIRSRC--LF 180 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHH-------------HhcCceEEEEecC-------------cccchhHHhhhe--eE
Confidence 5899999999999999999999996 3356889998982 445668999997 33
Q ss_pred hhccCCChHHHHHHHHHHHH
Q 003637 625 LILDKADEQTDRRLAKHIVS 644 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~ 644 (806)
+-..-|++++-..+...++.
T Consensus 181 iRvpaps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 181 IRVPAPSDEEITSVLSKVLK 200 (351)
T ss_pred EeCCCCCHHHHHHHHHHHHH
Confidence 34455555555555555554
No 241
>PRK08181 transposase; Validated
Probab=97.40 E-value=4.1e-05 Score=81.74 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=56.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC----eeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG----IYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS 556 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~----~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~ 556 (806)
|++|+||||||||.|+.+++..+... +|.+. ..+..........+. ...-.-.+..--+++|||++..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~-----~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT-----TDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH-----HHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccccc
Confidence 89999999999999999999866332 11110 000000000000000 00000012334589999998764
Q ss_pred H--HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCC
Q 003637 557 E--SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYN 601 (806)
Q Consensus 557 ~--~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~ 601 (806)
. ..+..|+++++... . +.++|.|+|-....|.
T Consensus 181 ~~~~~~~~Lf~lin~R~------------~-~~s~IiTSN~~~~~w~ 214 (269)
T PRK08181 181 KDQAETSVLFELISARY------------E-RRSILITANQPFGEWN 214 (269)
T ss_pred CCHHHHHHHHHHHHHHH------------h-CCCEEEEcCCCHHHHH
Confidence 4 45678999998642 1 1357888886655443
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.38 E-value=0.00089 Score=77.99 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=50.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCcccccc---ccccc-cCC--ceeecccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLES---GALVL-SDR--GICCIDEFDK 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~---Gal~l-Ad~--GIl~IDEidk 554 (806)
-+||+|+||.|||+||+-||+.+ |++.+.+.|+-.|.+..-+..++. -.-++ |+. ..++|||||-
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---------GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---------CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 57999999999999999999987 334455555533322111111111 00122 332 4678999999
Q ss_pred CCHHHHHHHHHHHh
Q 003637 555 MSESARSMLHEVME 568 (806)
Q Consensus 555 m~~~~~~~L~e~Me 568 (806)
.+......|+..++
T Consensus 399 a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 399 APRAAVDVILSLVK 412 (877)
T ss_pred CcHHHHHHHHHHHH
Confidence 99877777777776
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.00087 Score=73.32 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=41.8
Q ss_pred CCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh
Q 003637 543 DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 622 (806)
Q Consensus 543 d~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl 622 (806)
...|++||+.|+|+....++|+..||+- +.++.+|-.++ ..-.|.|++.||+..
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~-------------~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISA-------------QPARLPATIRSRCQR 166 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEEC-------------ChhhCchHHHhhheE
Confidence 3469999999999999999999999982 33444554454 134577999999965
Q ss_pred h
Q 003637 623 I 623 (806)
Q Consensus 623 i 623 (806)
+
T Consensus 167 i 167 (319)
T PRK08769 167 L 167 (319)
T ss_pred e
Confidence 5
No 244
>PRK06526 transposase; Provisional
Probab=97.33 E-value=6.9e-05 Score=79.50 Aligned_cols=104 Identities=19% Similarity=0.315 Sum_probs=57.8
Q ss_pred ccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee---ecCCCCCccccccccccccCCceeeccccc
Q 003637 477 RGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV---TKDPETGETVLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 477 rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~---~k~~~~ge~~le~Gal~lAd~GIl~IDEid 553 (806)
....|++|+||||||||.|+.+++..+.+. |........+..+ ......+. +......+..--+++|||++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~----g~~v~f~t~~~l~~~l~~~~~~~~--~~~~l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA----GHRVLFATAAQWVARLAAAHHAGR--LQAELVKLGRYPLLIVDEVG 169 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC----CCchhhhhHHHHHHHHHHHHhcCc--HHHHHHHhccCCEEEEcccc
Confidence 344599999999999999999998776332 1110000000000 00000010 00001112334689999999
Q ss_pred cCC--HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCC
Q 003637 554 KMS--ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSR 599 (806)
Q Consensus 554 km~--~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~ 599 (806)
..+ ...+..|+++++...- +.++|.++|-..+.
T Consensus 170 ~~~~~~~~~~~L~~li~~r~~-------------~~s~IitSn~~~~~ 204 (254)
T PRK06526 170 YIPFEPEAANLFFQLVSSRYE-------------RASLIVTSNKPFGR 204 (254)
T ss_pred cCCCCHHHHHHHHHHHHHHHh-------------cCCEEEEcCCCHHH
Confidence 764 6667788998876321 12478888855443
No 245
>PRK08116 hypothetical protein; Validated
Probab=97.33 E-value=0.00014 Score=77.81 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=57.2
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee--ecCCCC--Cccccccccc-cccCCceeecccc--
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV--TKDPET--GETVLESGAL-VLSDRGICCIDEF-- 552 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~--~k~~~~--ge~~le~Gal-~lAd~GIl~IDEi-- 552 (806)
..++|+|+||||||.||.++++.+-.. +............ .+.... +... +...+ .+.+..+++|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~----~~~v~~~~~~~ll~~i~~~~~~~~~~~-~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK----GVPVIFVNFPQLLNRIKSTYKSSGKED-ENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHHhcccccc-HHHHHHHhcCCCEEEEecccC
Confidence 369999999999999999999986321 1111001100000 000000 0000 00111 1334569999999
Q ss_pred ccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 553 DKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
++.++..+..|+++++.+. .....+|.|+|-.
T Consensus 190 e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 5677788889999998642 1223488888843
No 246
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0013 Score=72.76 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=67.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCC----CeeccCC--------CcccccceeeeecCCCCC--cccccc-----c---
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGK--------GSSAVGLTAYVTKDPETG--ETVLES-----G--- 537 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~--------~~~~~glta~~~k~~~~g--e~~le~-----G--- 537 (806)
+-.||.||+|+||+++|.++++.+-= ..-.+|. ..+.-++... . ++.+ ...++. .
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i-~--p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL-T--PEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-e--cccccccCCHHHHHHHHHHHh
Confidence 46789999999999999999988721 1001111 0000011101 1 1111 011100 0
Q ss_pred -cccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE-EEEecCCCCCCCCCCCcccccccCCcc
Q 003637 538 -ALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS-VLACANPSGSRYNPRLSVIENIHLPPT 615 (806)
Q Consensus 538 -al~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s-iIAAaNp~~g~~~~~~~~~~~i~lp~~ 615 (806)
.-..+...|++||+.|+|+....++|+..||+- +.++. |+.|.| .-.|.|.
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~--------------~~~lLpT 154 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACRE--------------PARLLAT 154 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECC--------------hhhChHH
Confidence 012234569999999999999999999999982 22333 444444 3457799
Q ss_pred ccCcchhh
Q 003637 616 LLSRFDLI 623 (806)
Q Consensus 616 LlsRFDli 623 (806)
+.||+-.+
T Consensus 155 IrSRCq~~ 162 (334)
T PRK07993 155 LRSRCRLH 162 (334)
T ss_pred HHhccccc
Confidence 99998644
No 247
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.29 E-value=0.00048 Score=88.25 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=97.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeecc--CCCccccccee-eeecCCCCCcccccccccccc--CCceeecccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTS--GKGSSAVGLTA-YVTKDPETGETVLESGALVLS--DRGICCIDEFDK 554 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~--g~~~~~~glta-~~~k~~~~ge~~le~Gal~lA--d~GIl~IDEidk 554 (806)
.++||.||.|+|||.+++++++...+.+-.- ........+-. ++ ...+|....+.|.++.| +|-.|++||++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~--~~~~g~l~freg~LV~Alr~G~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV--ADDNGDLVFREGVLVQALRNGDWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh--cCCCCCeeeehhHHHHHHHhCCEEEeccccc
Confidence 4999999999999999999999986532211 11111111100 11 12367777888888877 567899999999
Q ss_pred CCHHHHHHHHHHHhh-cEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 555 MSESARSMLHEVMEQ-QTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 555 m~~~~~~~L~e~Me~-q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
.+.+...+|..+++. +.+.+...........++.+.|+-||... |. +.-.+..++.+||..+
T Consensus 519 a~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~-y~------grk~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 519 APHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGT-YG------GRKILSRALRNRFIEL 581 (1856)
T ss_pred cchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccc-cc------hhhhhhhcccccchhh
Confidence 999999999999987 88887766666777788999999998742 22 2334558899999555
No 248
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0007 Score=74.71 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=40.6
Q ss_pred CCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh
Q 003637 543 DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 622 (806)
Q Consensus 543 d~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl 622 (806)
..-|++||+.|+|+....++|+..||+- +..+.+|..++ ..-.|+|+++||+-.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-------------~~~~LLpTI~SRcq~ 185 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSA-------------RIDRLLPTILSRCRQ 185 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEEC-------------ChhhCcHHHHhcCEE
Confidence 3469999999999999999999999972 33344444443 134577899999843
Q ss_pred h
Q 003637 623 I 623 (806)
Q Consensus 623 i 623 (806)
+
T Consensus 186 i 186 (342)
T PRK06964 186 F 186 (342)
T ss_pred E
Confidence 3
No 249
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.28 E-value=0.0004 Score=63.59 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=56.8
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHH---
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSES--- 558 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~--- 558 (806)
|.|+|+||+|||.+++.+++.+.+..-.... -... .+.+...-|. |- ....++++|||......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~------~~vy-~~~~~~~~w~---gY---~~q~vvi~DD~~~~~~~~~~ 67 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTK------DSVY-TRNPGDKFWD---GY---QGQPVVIIDDFGQDNDGYNY 67 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCC------CcEE-eCCCccchhh---cc---CCCcEEEEeecCccccccch
Confidence 6899999999999999988877443200000 0000 1111111121 11 13468999999988754
Q ss_pred -HHHHHHHHHhhcEEEEeeccee---eeecCceEEEEecC
Q 003637 559 -ARSMLHEVMEQQTVSIAKAGII---ASLNARTSVLACAN 594 (806)
Q Consensus 559 -~~~~L~e~Me~q~isi~kag~~---~~l~~~~siIAAaN 594 (806)
.-..|..++....+....|+.. ..+++ -.||+++|
T Consensus 68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN 106 (107)
T PF00910_consen 68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN 106 (107)
T ss_pred HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence 5666777777766665444433 22332 45666666
No 250
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.24 E-value=0.0061 Score=71.14 Aligned_cols=239 Identities=19% Similarity=0.154 Sum_probs=138.7
Q ss_pred HHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeecc-CCCcccccc
Q 003637 441 TRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTS-GKGSSAVGL 519 (806)
Q Consensus 441 ~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~-g~~~~~~gl 519 (806)
++.+-.++.+++....-|...+-+.... .. +..-+.+.|-||||||+..+.+.+.+..+.-.. -..+.-+-+
T Consensus 391 ls~vp~sLpcRe~E~~~I~~f~~~~i~~-~~------~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveI 463 (767)
T KOG1514|consen 391 LSAVPESLPCRENEFSEIEDFLRSFISD-QG------LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEI 463 (767)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCC-CC------CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEE
Confidence 4444445667777777776555544221 01 112688999999999999999988553210000 001222222
Q ss_pred eeeeecCC----------CCCcc-----ccccc--cc----cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecc
Q 003637 520 TAYVTKDP----------ETGET-----VLESG--AL----VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAG 578 (806)
Q Consensus 520 ta~~~k~~----------~~ge~-----~le~G--al----~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag 578 (806)
.+.....+ .+|+. .++.- .+ .....-|++|||+|.|-..-|..|..+.+=-
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-------- 535 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-------- 535 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--------
Confidence 22211111 11111 11110 01 1123368999999999887788887776532
Q ss_pred eeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC-----cchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCc
Q 003637 579 IIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS-----RFDLIYLILDKADEQTDRRLAKHIVSLHFENPENS 653 (806)
Q Consensus 579 ~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls-----RFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~ 653 (806)
+.-+++..|||-+| +.+||+-++. |.++-- .
T Consensus 536 --t~~~sKLvvi~IaN--------------TmdlPEr~l~nrvsSRlg~tR----------------------------i 571 (767)
T KOG1514|consen 536 --TLKNSKLVVIAIAN--------------TMDLPERLLMNRVSSRLGLTR----------------------------I 571 (767)
T ss_pred --cCCCCceEEEEecc--------------cccCHHHHhccchhhhcccee----------------------------e
Confidence 22367788999998 4555544332 333332 2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC---
Q 003637 654 EQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLS--- 730 (806)
Q Consensus 654 ~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~--- 730 (806)
.+.+++.+.|+++|.-.-+.. -.|..+|.++..+. +. .-. -.+|....+++.|...|.-+..
T Consensus 572 ~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvark-VA-----avS--------GDaRraldic~RA~Eia~~~~~~~k 636 (767)
T KOG1514|consen 572 CFQPYTHEQLQEIISARLKGL-DAFENKAIELVARK-VA-----AVS--------GDARRALDICRRAAEIAEERNVKGK 636 (767)
T ss_pred ecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHH-HH-----hcc--------ccHHHHHHHHHHHHHHhhhhccccc
Confidence 455666777777765433322 35677888877653 22 112 2379999999999888876655
Q ss_pred ----CCCCHhhHHHHHHHHHHHHHhhh
Q 003637 731 ----ELVEKHDVEEAFRLLEVAMQQSA 753 (806)
Q Consensus 731 ----~~V~~~Dv~~ai~l~~~sl~~~~ 753 (806)
..|+..|+.+|+.-|..+....+
T Consensus 637 ~~~~q~v~~~~v~~Ai~em~~~~~~~~ 663 (767)
T KOG1514|consen 637 LAVSQLVGILHVMEAINEMLASPYIKA 663 (767)
T ss_pred ccccceeehHHHHHHHHHHhhhhHHHH
Confidence 66899999999987776654433
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.19 E-value=5e-05 Score=76.26 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=55.4
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee---ecCCCCCccccccccccccCCceeeccccccC-
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV---TKDPETGETVLESGALVLSDRGICCIDEFDKM- 555 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~---~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm- 555 (806)
.|++|+|+||||||.||.++++.+-+. |.....+..+..+ ......+...-.-. .+.+--+++||||...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~--~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFITASDLLDELKQSRSDGSYEELLK--RLKRVDLLILDDLGYEP 121 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEHHHHHHHHHCCHCCTTHCHHHH--HHHTSSCEEEETCTSS-
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEeecCceeccccccccccchhhhcC--ccccccEecccccceee
Confidence 389999999999999999999865321 2111111111100 00000111100001 2234468999999865
Q ss_pred -CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcc
Q 003637 556 -SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 556 -~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRF 620 (806)
+......|+++++.+. .. -+.|.++|.....|..... +-.+..++++|.
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~~-~~tIiTSN~~~~~l~~~~~---d~~~a~aildRl 171 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------ER-KPTIITSNLSPSELEEVLG---DRALAEAILDRL 171 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT------------------
T ss_pred ecccccccchhhhhHhh------------cc-cCeEeeCCCchhhHhhccc---cccccccccccc
Confidence 4556778888888742 11 2466689976443332221 223456677773
No 252
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.0033 Score=69.21 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=26.0
Q ss_pred cCCceeeccccccCCHHHHHHHHHHHhhc
Q 003637 542 SDRGICCIDEFDKMSESARSMLHEVMEQQ 570 (806)
Q Consensus 542 Ad~GIl~IDEidkm~~~~~~~L~e~Me~q 570 (806)
+...|++||+++.|++..+++|+..||+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhC
Confidence 45579999999999999999999999974
No 253
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.00075 Score=67.08 Aligned_cols=90 Identities=31% Similarity=0.562 Sum_probs=48.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC------CCeecc-----CC--Ccccccc----eeeeec-C----CCCCccccc---
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP------RGIYTS-----GK--GSSAVGL----TAYVTK-D----PETGETVLE--- 535 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p------r~~~t~-----g~--~~~~~gl----ta~~~k-~----~~~ge~~le--- 535 (806)
|++|.|+||+|||++++.+.+.+. .++||. |. ++..+.+ ...... + +..|.|...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 799999999999999999988872 234542 11 1222222 111111 1 112333221
Q ss_pred ---cc--cccc--cCCceeeccccccCC---HHHHHHHHHHHhhc
Q 003637 536 ---SG--ALVL--SDRGICCIDEFDKMS---ESARSMLHEVMEQQ 570 (806)
Q Consensus 536 ---~G--al~l--Ad~GIl~IDEidkm~---~~~~~~L~e~Me~q 570 (806)
.| ++.. .+..+++||||.+|- +.-+.++.++|+..
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~ 125 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSN 125 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCC
Confidence 11 2222 355799999999874 45677888888743
No 254
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=96.90 E-value=0.0056 Score=68.86 Aligned_cols=190 Identities=24% Similarity=0.261 Sum_probs=110.4
Q ss_pred CceeeccccccC----CH----HHHHHHHHHHhhcEEEEeeccee--eeecCceEEEEecCCCCC--CCCCCCccccccc
Q 003637 544 RGICCIDEFDKM----SE----SARSMLHEVMEQQTVSIAKAGII--ASLNARTSVLACANPSGS--RYNPRLSVIENIH 611 (806)
Q Consensus 544 ~GIl~IDEidkm----~~----~~~~~L~e~Me~q~isi~kag~~--~~l~~~~siIAAaNp~~g--~~~~~~~~~~~i~ 611 (806)
+..++.||+..+ .. .....|+++=+.+.+++.+.+.. .--+..++|++++-|..- .+-... ...-
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~---~~~~ 226 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAE---DPEF 226 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhh---cccc
Confidence 456788998643 32 45677888888888887655432 233577999999887532 111000 0122
Q ss_pred CCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHH-------HHHHH--hcCCC---CCC
Q 003637 612 LPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAY-------VSYAR--KHIHP---KLS 679 (806)
Q Consensus 612 lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~y-------i~~ar--~~~~p---~ls 679 (806)
...-++.|| | |.+.+....... ........+.+.+..| +.... ....| .|+
T Consensus 227 ~~~Gll~Rf-L-~~~p~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ls 289 (378)
T PF13148_consen 227 RGDGLLARF-L-FVIPDSRKGRRF---------------EFPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVLELS 289 (378)
T ss_pred cCCChHhhe-e-eeccCccccccc---------------ccCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEecC
Confidence 446777888 4 333222111100 0001111122222222 22221 01112 689
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCCCCCHhhHHHHHHHHHHHHHhhh
Q 003637 680 DEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIR-----LSELVEKHDVEEAFRLLEVAMQQSA 753 (806)
Q Consensus 680 ~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~-----~~~~V~~~Dv~~ai~l~~~sl~~~~ 753 (806)
++|.+++.++|..+......++.......+-.|.-..++|+|..++-++ ....|+.+++..|+.+++..+.+..
T Consensus 290 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~~ 368 (378)
T PF13148_consen 290 DEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHAR 368 (378)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887542222211022233567788899999999988 7788999999999999998876543
No 255
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.89 E-value=0.0074 Score=74.77 Aligned_cols=148 Identities=12% Similarity=0.181 Sum_probs=92.0
Q ss_pred CCceeeccccccCC-------HHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCcc
Q 003637 543 DRGICCIDEFDKMS-------ESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPT 615 (806)
Q Consensus 543 d~GIl~IDEidkm~-------~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~ 615 (806)
..+|+|-|||+ |+ +++...|...||.|-+.-+-+....++ ++..+.+||||.... ..++.+..
T Consensus 1563 K~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~--------gRv~~~eR 1632 (3164)
T COG5245 1563 KDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDE--------GRVKYYER 1632 (3164)
T ss_pred hheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCc--------ccCccHHH
Confidence 35899999998 54 344456678888776543222222222 568899999997322 12556666
Q ss_pred ccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Q 003637 616 LLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 616 LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~ 695 (806)
+++|= +++..++|.-.....|.+.++...+.- .++++ .++++....-+.+|...|.
T Consensus 1633 f~r~~--v~vf~~ype~~SL~~Iyea~l~~s~l~----------~~ef~------------~~se~~~~aSv~ly~~~k~ 1688 (3164)
T COG5245 1633 FIRKP--VFVFCCYPELASLRNIYEAVLMGSYLC----------FDEFN------------RLSEETMSASVELYLSSKD 1688 (3164)
T ss_pred HhcCc--eEEEecCcchhhHHHHHHHHHHHHHHh----------hHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 66664 456677998888888877655432110 01111 2556666677778887776
Q ss_pred cCCCCCCCCcccccCHHHHHHHHHHHHHHHH
Q 003637 696 RGNFPGSSKKVITATPRQIESLIRLSEALAR 726 (806)
Q Consensus 696 ~~~~~gn~~~~~~it~R~Leslirla~a~A~ 726 (806)
+-... -...+..++|+|-.++|-....|.
T Consensus 1689 ~~k~~--lq~~y~y~pReLtR~lr~i~~yae 1717 (3164)
T COG5245 1689 KTKFF--LQMNYGYKPRELTRSLRAIFGYAE 1717 (3164)
T ss_pred hhhhh--cccccccChHHHHHHHHHHHhHHh
Confidence 43221 112367899999999888777665
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=96.88 E-value=0.00044 Score=73.69 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=55.3
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee---ecCCCCCcc--ccccccccccCCceeeccccc
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV---TKDPETGET--VLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~---~k~~~~ge~--~le~Gal~lAd~GIl~IDEid 553 (806)
.-|++|+||||||||+|+.+++..+... |............ ......+.. .+.. ......+++|||++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~----G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~---~~~~~dlLiiDdlg 174 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA----GIKVRFTTAADLLLQLSTAQRQGRYKTTLQR---GVMAPRLLIIDEIG 174 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHH---HhcCCCEEEEcccc
Confidence 3489999999999999999997765321 1110000000000 000000110 0100 02234589999998
Q ss_pred cC--CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCC
Q 003637 554 KM--SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 554 km--~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~ 600 (806)
.+ +...+..|+++++...- +.++|.|+|...+.|
T Consensus 175 ~~~~~~~~~~~lf~li~~r~~-------------~~s~iiTsn~~~~~w 210 (259)
T PRK09183 175 YLPFSQEEANLFFQVIAKRYE-------------KGSMILTSNLPFGQW 210 (259)
T ss_pred cCCCChHHHHHHHHHHHHHHh-------------cCcEEEecCCCHHHH
Confidence 74 44555678898876310 124778888665443
No 257
>PHA02774 E1; Provisional
Probab=96.86 E-value=0.0047 Score=71.53 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=59.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccC-CHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKM-SESA 559 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm-~~~~ 559 (806)
+++|+||||||||.++-.+.+.+...+ ...++. + ..|.+. .+++.-+++|||+..- ..-.
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~v------i~fvN~-----~----s~FwLq----pl~d~ki~vlDD~t~~~w~y~ 496 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKV------ISFVNS-----K----SHFWLQ----PLADAKIALLDDATHPCWDYI 496 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE------EEEEEC-----c----cccccc----hhccCCEEEEecCcchHHHHH
Confidence 899999999999999999999974221 111111 1 123232 3456679999999322 1223
Q ss_pred HHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 560 RSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 560 ~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
...|..+|+-+.|+|.+-.....--....+|.|+|..
T Consensus 497 d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 497 DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCC
Confidence 4467888888878775322221111224588889854
No 258
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=96.84 E-value=0.0074 Score=70.18 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=97.0
Q ss_pred cccccccccccCCceeeccccccCC-HHHHHHHHHHHhhcEEEEeecce----------eeeecCceEEEEecCCCCCCC
Q 003637 532 TVLESGALVLSDRGICCIDEFDKMS-ESARSMLHEVMEQQTVSIAKAGI----------IASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 532 ~~le~Gal~lAd~GIl~IDEidkm~-~~~~~~L~e~Me~q~isi~kag~----------~~~l~~~~siIAAaNp~~g~~ 600 (806)
..+++|++..|+||+++||--+-+. +.....|..+|..+.+.+...+. ....+.++.||...++..
T Consensus 321 ~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~--- 397 (509)
T PF13654_consen 321 TLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL--- 397 (509)
T ss_dssp GGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH---
T ss_pred ceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH---
Confidence 3568999999999999999988876 56789999999999998864421 001222233332222110
Q ss_pred CCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhc----CCC
Q 003637 601 NPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH----IHP 676 (806)
Q Consensus 601 ~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~----~~p 676 (806)
++++ .+.|..+.+.+ +.... ....-..+.+.+..|+.|.+.. --+
T Consensus 398 -------------------y~~L--------~~~D~dF~~lF-kv~ae---f~~~~~~~~e~~~~~~~~i~~~~~~~~L~ 446 (509)
T PF13654_consen 398 -------------------YYLL--------YEYDPDFYKLF-KVKAE---FDSEMPRTEENIRQYARFIASICQKEGLP 446 (509)
T ss_dssp -------------------HHHS---------HHHHHHHHHH-SEEEE-----SEEE--HHHHHHHHHHHHHHHHHHSS-
T ss_pred -------------------HHHH--------HHhCHHHHhCC-CEEEE---ccccCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 0000 01222222211 11110 0122345667777777766543 336
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 003637 677 KLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 677 ~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai~l 744 (806)
.|+.+|...|.++...+ .. ....+....|..+++.|...|+....+.|+.+||..|+.-
T Consensus 447 ~~~~~Av~~li~~~~R~--~q-------~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 447 PFDRSAVARLIEYSARL--DQ-------DKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp -BBHHHHHHHHHHHHHC--C--------SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hC-------CEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 79999999999887654 11 1355677899999999999999999999999999999864
No 259
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0058 Score=71.18 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=112.5
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccc---cccccccCCceeeccccccCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLE---SGALVLSDRGICCIDEFDKMS 556 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le---~Gal~lAd~GIl~IDEidkm~ 556 (806)
-||||.|++|+|||.|++++.+......+ ...-.+.|.....+.-+.-+..++ ..+ ..-...|+++|++|.+-
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~---~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~-~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLI---AHVEIVSCSTLDGSSLEKIQKFLNNVFSEA-LWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccc---eEEEEEechhccchhHHHHHHHHHHHHHHH-HhhCCcEEEEcchhhhh
Confidence 39999999999999999999998854311 011123343331111000000010 011 11234789999999764
Q ss_pred H---------H-HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccC--cchhhh
Q 003637 557 E---------S-ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLS--RFDLIY 624 (806)
Q Consensus 557 ~---------~-~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~Lls--RFDli~ 624 (806)
. . .-..|..++.|- + -+..+.+..+.+||+.+.. ..|++.|.+ +|+..
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqv-i-----~~y~~~~~~ia~Iat~qe~-------------qtl~~~L~s~~~Fq~~- 567 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQV-I-----KIYLKRNRKIAVIATGQEL-------------QTLNPLLVSPLLFQIV- 567 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHH-H-----HHHHccCcEEEEEEechhh-------------hhcChhhcCccceEEE-
Confidence 3 1 112233333221 1 1123345668899988732 233333332 67655
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSK 704 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~ 704 (806)
+-+..|+.....+|..++++.... ..+...++.+.. .
T Consensus 568 ~~L~ap~~~~R~~IL~~~~s~~~~----------------------------~~~~~dLd~ls~---------~------ 604 (952)
T KOG0735|consen 568 IALPAPAVTRRKEILTTIFSKNLS----------------------------DITMDDLDFLSV---------K------ 604 (952)
T ss_pred EecCCcchhHHHHHHHHHHHhhhh----------------------------hhhhHHHHHHHH---------h------
Confidence 344666777777888887763210 011122222211 1
Q ss_pred cccccCHHHHHHHHHHHHHHHHHh----cCCCCCHhhHHHHHHHHHH-HHHhhhccCCCC
Q 003637 705 KVITATPRQIESLIRLSEALARIR----LSELVEKHDVEEAFRLLEV-AMQQSATDHSTG 759 (806)
Q Consensus 705 ~~~~it~R~Leslirla~a~A~l~----~~~~V~~~Dv~~ai~l~~~-sl~~~~~~~~~g 759 (806)
.-+...+.|+-++..|.-.|-+. ....++.+++.++++-|-. +|+.....-.+|
T Consensus 605 -TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tg 663 (952)
T KOG0735|consen 605 -TEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTG 663 (952)
T ss_pred -cCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCC
Confidence 11244677887777766555432 2336889999999876654 555555555555
No 260
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.0035 Score=68.60 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=67.1
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCee---ccCC--------CcccccceeeeecCCCCCcccc---cc------ccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIY---TSGK--------GSSAVGLTAYVTKDPETGETVL---ES------GAL 539 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~---t~g~--------~~~~~glta~~~k~~~~ge~~l---e~------Gal 539 (806)
+-+||.|+.|+||+.+|+.+++.+-=.-. .+|. ..+.-++... ..+..+..... +. ..-
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i-~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI-KPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-ecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 36899999999999999999987621100 0110 0000011101 10100011100 00 011
Q ss_pred cccCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCc
Q 003637 540 VLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSR 619 (806)
Q Consensus 540 ~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsR 619 (806)
..+...|++||++++|+....++|+..+|+- +.++.+|-.++ ..-.|.|.+.||
T Consensus 105 ~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-------------~~~~lLpTI~SR 158 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTH-------------NQKRLLPTIVSR 158 (319)
T ss_pred ccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEEC-------------ChhhChHHHHhc
Confidence 1233469999999999999999999999982 33344444443 134577899999
Q ss_pred chhh
Q 003637 620 FDLI 623 (806)
Q Consensus 620 FDli 623 (806)
+-.+
T Consensus 159 Cq~~ 162 (319)
T PRK06090 159 CQQW 162 (319)
T ss_pred ceeE
Confidence 8544
No 261
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.80 E-value=0.00071 Score=71.28 Aligned_cols=96 Identities=22% Similarity=0.378 Sum_probs=54.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee--ec----CCC-CCccccccccccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV--TK----DPE-TGETVLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~--~k----~~~-~ge~~le~Gal~lAd~GIl~IDEid 553 (806)
+++|.|+||||||.|+.+++..+... |.....+.+.... .+ +.. +.+..++ .+..--+++|||++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~----g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~----~l~~~dlLvIDDig 172 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR----GKSVLIITVADIMSAMKDTFSNSETSEEQLLN----DLSNVDLLVIDEIG 172 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEHHHHHHHHHHHHhhccccHHHHHH----HhccCCEEEEeCCC
Confidence 89999999999999999999987432 1111101000000 00 000 0001111 12344589999998
Q ss_pred cCCHH--HHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 554 KMSES--ARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 554 km~~~--~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
....+ .+..|+++++.+. ..+..+|.++|-.
T Consensus 173 ~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~ 205 (244)
T PRK07952 173 VQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCC
Confidence 76544 4567888888642 2234577778844
No 262
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.76 E-value=0.0013 Score=69.63 Aligned_cols=124 Identities=21% Similarity=0.202 Sum_probs=81.7
Q ss_pred HHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCccc
Q 003637 437 YETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSA 516 (806)
Q Consensus 437 ~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~ 516 (806)
|+-|-..+.-.++|+.-+|.-|+-++.+-..... -+...-+=|.|.|||||+-+++.|++.+-+. |..+.-
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~----Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRG----GLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhc----cccchh
Confidence 5567777888889999999988877776533222 2233456789999999999999999887554 443333
Q ss_pred ccceeeeecCCCCC---ccccc-----cccccccCCceeeccccccCCHHHHHHHHHHHhh
Q 003637 517 VGLTAYVTKDPETG---ETVLE-----SGALVLSDRGICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 517 ~glta~~~k~~~~g---e~~le-----~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
+..-.....=|... .+..+ .|.+....+.+.++||.|||++.....|+..++.
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdy 204 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDY 204 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcc
Confidence 22221111111100 01110 1344455678999999999999999999999984
No 263
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.74 E-value=0.0024 Score=65.14 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=69.7
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHH
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSES 558 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~ 558 (806)
+.-++|+|+-|+|||++++.+... .|+.. +... ..++. ...+...-+++|||++.+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~-------~~~~-----~~kd~-----~~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDS-------INDF-----DDKDF-----LEQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCc-------cccC-----CCcHH-----HHHHHHhHheeHHHHhhcchh
Confidence 457889999999999999998433 33222 1100 11111 123444568999999999999
Q ss_pred HHHHHHHHHhhcEEEEee--cceeeeecCceEEEEecCCCC
Q 003637 559 ARSMLHEVMEQQTVSIAK--AGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 559 ~~~~L~e~Me~q~isi~k--ag~~~~l~~~~siIAAaNp~~ 597 (806)
+.+.|-..+-..+..+.+ +.....++-+++++||+|...
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc
Confidence 999999999988888764 344567788899999999643
No 264
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.73 E-value=0.00082 Score=73.94 Aligned_cols=98 Identities=24% Similarity=0.280 Sum_probs=55.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceee-----eecCCCCCccccccccccccCCceeecccccc-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAY-----VTKDPETGETVLESGALVLSDRGICCIDEFDK- 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~-----~~k~~~~ge~~le~Gal~lAd~GIl~IDEidk- 554 (806)
+++|+|+||||||.|+.++++.+-+. |. +.+-+++. ............+...-.+.+--+++||++..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~----g~--~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDR----GK--SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHC----CC--eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 89999999999999999999987432 11 11111110 00000000000000001122335899999954
Q ss_pred -CCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCC
Q 003637 555 -MSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 555 -m~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~ 596 (806)
.++..+..|+++++... ..+-.+|.|+|-.
T Consensus 259 ~~t~~~~~~Lf~iin~R~------------~~~k~tIiTSNl~ 289 (329)
T PRK06835 259 KITEFSKSELFNLINKRL------------LRQKKMIISTNLS 289 (329)
T ss_pred CCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 46667788999988752 1223477778743
No 265
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.00053 Score=72.84 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=57.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeec--CCCCCcccccccccc-ccCCceeecccccc--C
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTK--DPETGETVLESGALV-LSDRGICCIDEFDK--M 555 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k--~~~~ge~~le~Gal~-lAd~GIl~IDEidk--m 555 (806)
+++|+|+||||||.||-+++..+-+. |....-+.++..+.+ ..... -..+.-... +..--+++|||+.. +
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~Lk~~~~~-~~~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSKLKAAFDE-GRLEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHHhc-CchHHHHHHHhhcCCEEEEecccCccC
Confidence 99999999999999999999887432 111111111111100 00000 000000111 33445899999998 4
Q ss_pred CHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCC
Q 003637 556 SESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 556 ~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~ 600 (806)
+...++.+++++.+...+ +.. +.++|-..+.+
T Consensus 182 ~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~ 213 (254)
T COG1484 182 SQEEADLLFQLISRRYES------------RSL-IITSNLSFGEW 213 (254)
T ss_pred CHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHH
Confidence 555678888888775322 222 77888665543
No 266
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.0022 Score=65.48 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=25.1
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
|+.|.||+||||+|||+++|-+++.+.-
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhc
Confidence 4569999999999999999999999854
No 267
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.66 E-value=0.00053 Score=64.50 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=20.5
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p 504 (806)
-.++++|+||+|||.+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3899999999999999999999863
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0057 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.6
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+.|++.|+||+|||+++..++..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 358999999999999999999977744
No 269
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.001 Score=71.19 Aligned_cols=97 Identities=21% Similarity=0.223 Sum_probs=53.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceee--e--ecCCCCCccccccccccccCCceeecccccc--
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAY--V--TKDPETGETVLESGALVLSDRGICCIDEFDK-- 554 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~--~--~k~~~~ge~~le~Gal~lAd~GIl~IDEidk-- 554 (806)
+++|+|+||||||.|+.++++.+.... +...+-+++. . .+... +. .+.-.-.+..--+++|||++.
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~-----g~~v~y~~~~~l~~~l~~~~-~~--~~~~~~~~~~~dlLiIDDl~~~~ 190 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKK-----GVPVLYFPFVEGFGDLKDDF-DL--LEAKLNRMKKVEVLFIDDLFKPV 190 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhc-----CceEEEEEHHHHHHHHHHHH-HH--HHHHHHHhcCCCEEEEecccccc
Confidence 899999999999999999998764320 1111111100 0 00000 00 000000123446999999943
Q ss_pred -----CCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 555 -----MSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 555 -----m~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
+++-.+..|+++++...- ....+|.|+|...
T Consensus 191 ~g~e~~t~~~~~~lf~iin~R~~------------~~k~tIitsn~~~ 226 (266)
T PRK06921 191 NGKPRATEWQIEQMYSVLNYRYL------------NHKPILISSELTI 226 (266)
T ss_pred CCCccCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCH
Confidence 555566788888876421 1223677888543
No 270
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.34 E-value=0.049 Score=59.54 Aligned_cols=140 Identities=13% Similarity=0.127 Sum_probs=75.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
=++|+|+.|+|||++++.+.++++...-+ - .+...+... ..+.+. .-.+...-+++.||+..-.....
T Consensus 78 ~~~l~G~g~nGKStl~~~l~~l~G~~~~~-~--~~~~~~~~~-----~~~~f~----~a~l~gk~l~~~~E~~~~~~~~~ 145 (304)
T TIGR01613 78 LFFLYGNGGNGKSTFQNLLSNLLGDYATT-A--VASLKMNEF-----QEHRFG----LARLEGKRAVIGDEVQKGYRDDE 145 (304)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhChhhcc-C--Ccchhhhhc-----cCCCch----hhhhcCCEEEEecCCCCCccccH
Confidence 58899999999999999999998543100 0 001111110 011111 11244456788999875333333
Q ss_pred HHHHHHHhhcEEEEee-cceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHH
Q 003637 561 SMLHEVMEQQTVSIAK-AGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLA 639 (806)
Q Consensus 561 ~~L~e~Me~q~isi~k-ag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la 639 (806)
+.|..+...-.+++.. ......+...+.++.++|-... +. .-..++.+|+=++-.....+.++.|..|.
T Consensus 146 ~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~-~~---------~~~~a~~RR~~vi~f~~~~~~~~~d~~l~ 215 (304)
T TIGR01613 146 STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPR-IR---------GFDGGIKRRLRIIPFTKVFPGEKKNKALK 215 (304)
T ss_pred HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCc-cC---------CCChhheeeEEEEeccCcCCccccCccHH
Confidence 5566666556666643 2334455567889999995431 11 12357778873332222223333344444
Q ss_pred HHH
Q 003637 640 KHI 642 (806)
Q Consensus 640 ~~i 642 (806)
+.+
T Consensus 216 ~kl 218 (304)
T TIGR01613 216 EDY 218 (304)
T ss_pred HHH
Confidence 444
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.26 E-value=0.0021 Score=70.08 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=23.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+++|+|+||||||.||.++++.+.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999998854
No 272
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.0071 Score=65.09 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=66.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCC-----CcccccceeeeecCCCCCcccccc-----ccc----cccCCc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK-----GSSAVGLTAYVTKDPETGETVLES-----GAL----VLSDRG 545 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~-----~~~~~glta~~~k~~~~ge~~le~-----Gal----~lAd~G 545 (806)
+-.||+|++|+||..+|..+++.+--.- ..+. ....-++... ..+..+....++. ..+ ..+...
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~-~~~~c~~~~~~~HPD~~~i-~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKET-SPEAAYKISQKIHPDIHEF-SPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCC-CccHHHHHhcCCCCCEEEE-ecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 4678999999999999999998762110 0000 0000011101 1110000010110 011 123456
Q ss_pred eeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE-EEEecCCCCCCCCCCCcccccccCCccccCcchhhh
Q 003637 546 ICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS-VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY 624 (806)
Q Consensus 546 Il~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s-iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~ 624 (806)
|++||+.|+|+.+.+++|+..||+- +..+. ++.|.| .-.|+|+++||+-.+.
T Consensus 98 v~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~--------------~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 98 IYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAK--------------PQRLPPTIRSRSLSIH 150 (290)
T ss_pred EEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCC--------------hhhCcHHHHhcceEEE
Confidence 9999999999999999999999982 22333 444444 3457788899986553
No 273
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.12 E-value=0.0065 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 437 YETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 437 ~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+.|...+.-.+||+..++..++-++-+-.... .-+..+-+.|.|+||||||.+++.||+.+-+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 445667777889999999988886666543221 1223346679999999999999999988633
No 274
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=96.11 E-value=0.063 Score=48.20 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=58.6
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCC
Q 003637 653 SEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSEL 732 (806)
Q Consensus 653 ~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~ 732 (806)
..+..++...|++|. .+++++.+.|...+.. ..+|.|....++|+|..+|.|..++.
T Consensus 27 ~~Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~~--------------~~lS~R~~~rilrvARTIADL~~~~~ 83 (96)
T PF13335_consen 27 KCNAQLPGEELRKYC---------PLSSEAKKLLEQAAEK--------------LNLSARGYHRILRVARTIADLEGSER 83 (96)
T ss_pred CccccCCHHHHHhHc---------CCCHHHHHHHHHHHHH--------------cCcCHHHHHHHHHHHHHHHhHcCCCC
Confidence 456778888888872 3899999999887643 24789999999999999999999999
Q ss_pred CCHhhHHHHHHH
Q 003637 733 VEKHDVEEAFRL 744 (806)
Q Consensus 733 V~~~Dv~~ai~l 744 (806)
|+.+||.+|+.+
T Consensus 84 I~~~hi~EAl~y 95 (96)
T PF13335_consen 84 ITREHIAEALSY 95 (96)
T ss_pred CCHHHHHHHHhC
Confidence 999999999864
No 275
>PHA02624 large T antigen; Provisional
Probab=96.03 E-value=0.0081 Score=69.94 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=65.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCH---
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSE--- 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~--- 557 (806)
-+||+||||||||+++.++.+.+...+. .++.... .-.+.+. .++|.-+++||++..-.-
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~vl-------sVNsPt~------ks~FwL~----pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGKSL-------NVNCPPD------KLNFELG----CAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE-------EeeCCcc------hhHHHhh----hhhhceEEEeeeccccccccc
Confidence 8999999999999999999999832211 1111100 0112222 356777888888742111
Q ss_pred ----H----HHHHHHHHHhhc-EEEEee---cceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 558 ----S----ARSMLHEVMEQQ-TVSIAK---AGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 558 ----~----~~~~L~e~Me~q-~isi~k---ag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
. ...-|..+|+-. .|++.+ +-....+|. .|.|+| ...||..+.-||-.+
T Consensus 496 ~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~N--------------ey~iP~T~~~Rf~~~ 556 (647)
T PHA02624 496 DLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMN--------------EYLIPQTVKARFAKV 556 (647)
T ss_pred cCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeec--------------CcccchhHHHHHHHh
Confidence 0 123456666654 455542 222333343 677888 567888998898655
No 276
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.012 Score=71.70 Aligned_cols=161 Identities=18% Similarity=0.197 Sum_probs=85.9
Q ss_pred hcccccc-hhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeec---cCCCcccccc
Q 003637 444 LAPNIWE-LDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT---SGKGSSAVGL 519 (806)
Q Consensus 444 i~P~I~G-~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t---~g~~~~~~gl 519 (806)
+.|.|-+ .+++++.|-. |...+ ++ |-+|+|+||+|||.++..+++..-++-.- .++....+.+
T Consensus 185 ldPvigr~deeirRvi~i-L~Rrt-k~-----------NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEI-LSRKT-KN-----------NPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHH-HhccC-CC-----------CceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6777766 5667665543 33332 11 88999999999999999999988664211 2333333333
Q ss_pred eeeeecCCCCCccccccccc---cc-c-CCceeeccccccCCHH-------HHHHHHHHHhh-cEEEEeecceeeeecCc
Q 003637 520 TAYVTKDPETGETVLESGAL---VL-S-DRGICCIDEFDKMSES-------ARSMLHEVMEQ-QTVSIAKAGIIASLNAR 586 (806)
Q Consensus 520 ta~~~k~~~~ge~~le~Gal---~l-A-d~GIl~IDEidkm~~~-------~~~~L~e~Me~-q~isi~kag~~~~l~~~ 586 (806)
...+......|++...--.+ +. + .+-|+||||++.+-.. +-..++..|.. +.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~--------------- 316 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG--------------- 316 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC---------------
Confidence 32222222233332221111 11 3 3347899999865321 22333333332 21
Q ss_pred eEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCChHHHHHHHHHH
Q 003637 587 TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHI 642 (806)
Q Consensus 587 ~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~~~~d~~la~~i 642 (806)
..+|+|+.-...+ .-+.-.|++.+||+++. +..|+.+....+....
T Consensus 317 l~~IGatT~e~Y~--------k~iekdPalErrw~l~~--v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 317 LWCIGATTLETYR--------KCIEKDPALERRWQLVL--VPIPSVENLSLILPGL 362 (898)
T ss_pred eEEEecccHHHHH--------HHHhhCcchhhCcceeE--eccCcccchhhhhhhh
Confidence 4567666532221 23445589999999884 4455544433344433
No 277
>PF13173 AAA_14: AAA domain
Probab=95.90 E-value=0.01 Score=56.09 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=44.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC--C-CeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP--R-GIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSE 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p--r-~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~ 557 (806)
.++|.|+.|+|||++++.+++... . .+|.+-.......+. +...-++..+. ......++||||++.++.
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhcc
Confidence 689999999999999999887654 2 222211111100000 00000111111 111457899999999974
Q ss_pred HHHHHHHHHHhh
Q 003637 558 SARSMLHEVMEQ 569 (806)
Q Consensus 558 ~~~~~L~e~Me~ 569 (806)
....+....+.
T Consensus 76 -~~~~lk~l~d~ 86 (128)
T PF13173_consen 76 -WEDALKFLVDN 86 (128)
T ss_pred -HHHHHHHHHHh
Confidence 55566666654
No 278
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.80 E-value=0.0071 Score=67.47 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=55.1
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccCC---Cccc--ccceeeeecCCCCCccccccccccccCCc-eeeccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK---GSSA--VGLTAYVTKDPETGETVLESGALVLSDRG-ICCIDEFD 553 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~---~~~~--~glta~~~k~~~~ge~~le~Gal~lAd~G-Il~IDEid 553 (806)
-.+.|.|++|+|||.|+-.....+|.. .+ .+-. ..+-.-+.+-. .+...+..-+-.++.+. +||+|||.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~----~k~R~HFh~Fm~~vh~~l~~~~-~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIK----RKRRVHFHEFMLDVHSRLHQLR-GQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCcc----ccccccccHHHHHHHHHHHHHh-CCCccHHHHHHHHHhcCCEEEEeeee
Confidence 379999999999999999999998752 11 0000 00000000000 01111211222334444 99999998
Q ss_pred cCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 554 KMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 554 km~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
--+..+--.|-..++. -+...+.++||+|...
T Consensus 138 V~DiaDAmil~rLf~~------------l~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 138 VTDIADAMILKRLFEA------------LFKRGVVLVATSNRPP 169 (362)
T ss_pred ccchhHHHHHHHHHHH------------HHHCCCEEEecCCCCh
Confidence 7766654333333321 0223467999999653
No 279
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.026 Score=61.29 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=64.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC---CeeccCCCcccccceeeeecCCCCCcccc-------cc---ccccccCCcee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR---GIYTSGKGSSAVGLTAYVTKDPETGETVL-------ES---GALVLSDRGIC 547 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr---~~~t~g~~~~~~glta~~~k~~~~ge~~l-------e~---Gal~lAd~GIl 547 (806)
-.||+|+.|+||+++++.+++.+-- ... ..+...-++... ++.++.... +. -.+...+..|+
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~--~~~~~p~n~~~~---d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~Kvv 94 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNL--NEQELPANIILF---DIFDKDLSKSEFLSAINKLYFSSFVQSQKKIL 94 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCC--CCCCCCcceEEe---ccCCCcCCHHHHHHHHHHhccCCcccCCceEE
Confidence 4569999999999999999988611 000 000000011111 100110000 00 11112366799
Q ss_pred eccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEec-CCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACA-NPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 548 ~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAa-Np~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
+||+.++|+...+++|+..||+ .+..+.+|-.+ |+ -.|.+++.||+-.+
T Consensus 95 II~~~e~m~~~a~NaLLK~LEE-------------Pp~~t~~il~~~~~--------------~kll~TI~SRc~~~ 144 (299)
T PRK07132 95 IIKNIEKTSNSLLNALLKTIEE-------------PPKDTYFLLTTKNI--------------NKVLPTIVSRCQVF 144 (299)
T ss_pred EEecccccCHHHHHHHHHHhhC-------------CCCCeEEEEEeCCh--------------HhChHHHHhCeEEE
Confidence 9999999999999999999997 23444555444 42 23557788998544
No 280
>PF05729 NACHT: NACHT domain
Probab=95.73 E-value=0.0099 Score=57.85 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-++|+|+||+|||++++.++.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh
Confidence 3789999999999999999877644
No 281
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.62 E-value=0.018 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
+++|+|+||+|||+++..++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988874
No 282
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.38 E-value=0.047 Score=63.74 Aligned_cols=89 Identities=16% Similarity=0.205 Sum_probs=49.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcc-------cccceee-------eecCCCCCcccccccc---c----
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSS-------AVGLTAY-------VTKDPETGETVLESGA---L---- 539 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~-------~~glta~-------~~k~~~~ge~~le~Ga---l---- 539 (806)
-+||.||||||||++++.+++.+.-.+..-..+.. ..+.... ..+-..-+++.+.... +
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 67889999999999999999998653321111111 0000000 0000011222222211 1
Q ss_pred --cccCCceeeccccccCCHHHHHHHHHHHhh
Q 003637 540 --VLSDRGICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 540 --~lAd~GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
.....-|++|+|+-.+-......++++|++
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~ 158 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRDTSRFREALRQ 158 (519)
T ss_pred CCcCCCceEEEeeccccccchhHHHHHHHHHH
Confidence 113456999999987665555788888875
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.33 E-value=0.016 Score=57.63 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=28.0
Q ss_pred ccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHC
Q 003637 448 IWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 448 I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
++|++...+.+.-.|--.. ....-+++|+|++|+|||++++.+...+
T Consensus 2 fvgR~~e~~~l~~~l~~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTS---------S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677777777765552110 0011389999999999999999888776
No 284
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.6 Score=51.49 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=76.9
Q ss_pred hhHHHHHHHhhc--ccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 434 PNIYETLTRSLA--PNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 434 ~~~~~~l~~si~--P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
.+..+.|+++|- |..+... .|--++.-|+.-+ -++.|++=.||.+||||.+-+- .+|.....+|
T Consensus 189 deWidVLirsiGmePa~~e~r-tkwhll~RlvplV----------EnNyN~cElGPr~TGKshvYke---vSpn~~liSG 254 (683)
T COG4930 189 DEWIDVLIRSIGMEPAVYEPR-TKWHLLARLVPLV----------ENNYNMCELGPRQTGKSHVYKE---VSPNVRLISG 254 (683)
T ss_pred HHHHHHHHHhcCCCccccChh-hhHHHHHHHHHHh----------hCCcchhhcCCCccCccceehc---cCCceEEeeC
Confidence 345566777764 3333322 2333443344332 2346999999999999988654 4566666777
Q ss_pred CCcccccceeeeecCCCCCccccccccccccCCceeeccccccCC---HHHHHHHHHHHhhcEEEEeecceeeeecCceE
Q 003637 512 KGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMS---ESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 512 ~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~---~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s 588 (806)
.-.+.++|.... ..-..|.+-+-| ++.+||+..+. ++-...|...|+.|.+. +.. .....+.+
T Consensus 255 GqttvAnLFYNm--------atrqiGlvg~wD--vVaFDEVagirFkdkDg~qilKDYMaSGsf~--RG~--~~v~~~AS 320 (683)
T COG4930 255 GQTTVANLFYNM--------ATRQIGLVGLWD--VVAFDEVAGIRFKDKDGMQILKDYMASGSFE--RGD--KKVVSDAS 320 (683)
T ss_pred CcccHHHHHHHH--------hhccccceeeee--eeeehhhccccccCccHHHHHHHHHhcCCcc--ccc--ccccccce
Confidence 766666654321 111234433333 78899998763 33456788899998775 333 33344445
Q ss_pred EEEecC
Q 003637 589 VLACAN 594 (806)
Q Consensus 589 iIAAaN 594 (806)
++.-.|
T Consensus 321 lVFvGN 326 (683)
T COG4930 321 LVFVGN 326 (683)
T ss_pred EEEEec
Confidence 554444
No 285
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.17 E-value=0.016 Score=55.33 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|+++|+||+|||++++.+++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998874
No 286
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.15 E-value=0.013 Score=65.52 Aligned_cols=93 Identities=18% Similarity=0.254 Sum_probs=50.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHC--C----CCeeccCCCcccccceeeeecCC---CCCccccccccc---------ccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS--P----RGIYTSGKGSSAVGLTAYVTKDP---ETGETVLESGAL---------VLS 542 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~--p----r~~~t~g~~~~~~glta~~~k~~---~~ge~~le~Gal---------~lA 542 (806)
-+++.|.||||||.||-.+++.+ . ..+|.++......-+...+.+.. ..+.....+..+ ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 57899999999999999999987 1 23333332211111111111100 000111111111 123
Q ss_pred CCceeeccccccCCHH--------HHHHHHHHHhhcEEE
Q 003637 543 DRGICCIDEFDKMSES--------ARSMLHEVMEQQTVS 573 (806)
Q Consensus 543 d~GIl~IDEidkm~~~--------~~~~L~e~Me~q~is 573 (806)
.-.++++||.++|... ....|.+.|....+.
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~ 121 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVV 121 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEE
Confidence 4479999999999882 236777778764443
No 287
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.11 E-value=0.043 Score=58.04 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=66.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC-CC-eeccCCC--------cccccceee-eecCCCCCccccc------ccccccc
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP-RG-IYTSGKG--------SSAVGLTAY-VTKDPETGETVLE------SGALVLS 542 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p-r~-~~t~g~~--------~~~~glta~-~~k~~~~ge~~le------~Gal~lA 542 (806)
+-.||+|++|+||..+|.++++.+- .. .-.+|.= .+.-++... ....+..-+...+ ...+..+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 4689999999999999999988762 11 0001110 000011100 0000000000000 0011112
Q ss_pred CCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchh
Q 003637 543 DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 622 (806)
Q Consensus 543 d~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDl 622 (806)
...|++|+++++|+....++|+..+|+- +.++.+|-.++ ..-.+.+.+.||+-.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~-------------~~~~lLpTI~SRCq~ 141 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTR-------------NENNILNTILSRCVQ 141 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEEC-------------ChHhCchHhhhheee
Confidence 3469999999999999999999999982 23333444433 144677999999844
Q ss_pred h
Q 003637 623 I 623 (806)
Q Consensus 623 i 623 (806)
+
T Consensus 142 ~ 142 (261)
T PRK05818 142 Y 142 (261)
T ss_pred e
Confidence 4
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.05 E-value=0.016 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.8
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
|+|+|+||+|||++++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
No 289
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.94 E-value=0.061 Score=59.41 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=58.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
-++|+|||+||||.++-.+.+.+...+.+ -++ ....+-+. .+++..|.+||+...--=+-.
T Consensus 264 Clvi~GPPdTGKS~F~~SLi~Fl~GkViS------f~N---------s~ShFWLq----PL~d~Ki~llDDAT~~cW~Y~ 324 (432)
T PF00519_consen 264 CLVIYGPPDTGKSMFCMSLIKFLKGKVIS------FVN---------SKSHFWLQ----PLADAKIALLDDATYPCWDYI 324 (432)
T ss_dssp EEEEESSCCCSHHHHHHHHHHHHTSEEE-------GGG---------TTSCGGGG----GGCT-SSEEEEEE-HHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHHHHhCCEEEE------ecC---------CCCccccc----chhcCcEEEEcCCcccHHHHH
Confidence 78999999999999999999988443221 111 11234444 377888999999764322211
Q ss_pred -HHHHHHHhhcEEEEe---ecceeeeecCceEEEEecCCC
Q 003637 561 -SMLHEVMEQQTVSIA---KAGIIASLNARTSVLACANPS 596 (806)
Q Consensus 561 -~~L~e~Me~q~isi~---kag~~~~l~~~~siIAAaNp~ 596 (806)
.-|..+|+-..|+|. |+-+....|. +|-|+|-.
T Consensus 325 D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~d 361 (432)
T PF00519_consen 325 DTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNID 361 (432)
T ss_dssp HHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-
T ss_pred HHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCC
Confidence 346678888888885 3444444443 77788854
No 290
>PRK13947 shikimate kinase; Provisional
Probab=94.84 E-value=0.027 Score=55.66 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
||+|+|.||+|||++++.+++.+....+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i 30 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI 30 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999999865544
No 291
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.80 E-value=0.032 Score=65.41 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=26.8
Q ss_pred ccccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 475 SFRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 475 ~~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.++.+-++|+.|++|+|||+|+|+++.+-|-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 4455559999999999999999999999875
No 292
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.79 E-value=0.065 Score=55.68 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=41.7
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccc---cCCceeeccccccCCHH
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVL---SDRGICCIDEFDKMSES 558 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~l---Ad~GIl~IDEidkm~~~ 558 (806)
+++.|.||+|||++++.+.... .+++...+... -.+....+......+.++.-.... .....++|||+..+++.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g 77 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISPTIE-LYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPG 77 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--cccccccccce-eccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChH
Confidence 4788999999999999999883 11111111000 000000111111112222111111 23569999999999986
Q ss_pred HHHHHHH
Q 003637 559 ARSMLHE 565 (806)
Q Consensus 559 ~~~~L~e 565 (806)
....|..
T Consensus 78 ~l~~l~~ 84 (234)
T PF01443_consen 78 YLLLLLS 84 (234)
T ss_pred HHHHHHh
Confidence 6554433
No 293
>PHA00729 NTP-binding motif containing protein
Probab=94.75 E-value=0.021 Score=59.17 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=21.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+|+|+|+||||||++|..+++.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 294
>PRK14532 adenylate kinase; Provisional
Probab=94.67 E-value=0.031 Score=56.29 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.+++...-.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 79999999999999999999887443
No 295
>PRK04296 thymidine kinase; Provisional
Probab=94.64 E-value=0.086 Score=53.48 Aligned_cols=23 Identities=17% Similarity=-0.037 Sum_probs=18.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
=++++|+||+|||++|..++..+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 36889999999998776666554
No 296
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.027 Score=53.96 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.5
Q ss_pred cccceEEECCCCChHHHHHHHHHHHC
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
-..|||+.|-||||||+++.+++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 34599999999999999999999876
No 297
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.61 E-value=0.055 Score=64.28 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.4
Q ss_pred ceeeccccccCCHHHHHHHHHHHhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
-+++|||+-.++...-..|++++..
T Consensus 261 dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 261 DVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred cEEEEcccccCCHHHHHHHHHhcCC
Confidence 5899999999999888888887754
No 298
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.60 E-value=0.012 Score=60.10 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC---Cee-ccCCCcc------cccceeeeecCCCCCcccc--ccccccccCCceee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR---GIY-TSGKGSS------AVGLTAYVTKDPETGETVL--ESGALVLSDRGICC 548 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr---~~~-t~g~~~~------~~glta~~~k~~~~ge~~l--e~Gal~lAd~GIl~ 548 (806)
-+++.|+||||||++++.+.+.+.. .+. +.-.+.. ..|..+....... ..+.. ..+.......-+++
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l-~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFL-YRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHT-TEECCEECCSSCC-TSTSEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHH-hcCCcccccccccCCcccEEE
Confidence 4677899999999999998876632 111 1000000 0111111100000 00000 00011133446999
Q ss_pred ccccccCCHHHHHHHHHHHhh
Q 003637 549 IDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 549 IDEidkm~~~~~~~L~e~Me~ 569 (806)
|||...++......|++....
T Consensus 99 VDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 99 VDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp ESSGGG-BHHHHHHHHHHS-T
T ss_pred EecccccCHHHHHHHHHHHHh
Confidence 999999999888888877765
No 299
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.47 E-value=0.036 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.+++.+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999887443
No 300
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.44 E-value=0.11 Score=56.16 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=41.6
Q ss_pred cCCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcch
Q 003637 542 SDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFD 621 (806)
Q Consensus 542 Ad~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFD 621 (806)
+...|++||+.|+|+....++|+..+|+- +.++.+|-.++ ..-.|.|.+.||+-
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~-------------~~~~lLpTI~SRcq 156 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTN-------------DENKVLPTIKSRTQ 156 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEEC-------------ChhhCchHHHHcce
Confidence 34569999999999999999999999982 23343444443 13457789999996
Q ss_pred hhh
Q 003637 622 LIY 624 (806)
Q Consensus 622 li~ 624 (806)
.+.
T Consensus 157 ~i~ 159 (290)
T PRK07276 157 IFH 159 (290)
T ss_pred eee
Confidence 553
No 301
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.34 E-value=0.041 Score=54.19 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=24.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.+|+|+|+||+|||++++.+++.+...
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999999999999988443
No 302
>PRK08118 topology modulation protein; Reviewed
Probab=94.33 E-value=0.04 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.|+++|+||+|||++++.+++.+.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998743
No 303
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=0.27 Score=55.42 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=55.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCC--cccccceeeee-------------cC---CCCCcccccc--cccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKG--SSAVGLTAYVT-------------KD---PETGETVLES--GALV 540 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~--~~~~glta~~~-------------k~---~~~ge~~le~--Gal~ 540 (806)
.+.+.|-||||||.++..+..-+... ++. .+.++|+.+.. .+ +.++.-.++. -.+.
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~----~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDSLSKS----SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHhhhhh----cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 78899999999999998777665432 111 12233432110 00 0111000000 0011
Q ss_pred cc-CCceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCC
Q 003637 541 LS-DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANP 595 (806)
Q Consensus 541 lA-d~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp 595 (806)
.+ .--++++||+|.+....+..|+++-|=- ...+.++.+|+-||.
T Consensus 253 q~k~~~llVlDEmD~L~tr~~~vLy~lFewp----------~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRSQTVLYTLFEWP----------KLPNSRIILIGIANS 298 (529)
T ss_pred cccceEEEEechhhHHhhcccceeeeehhcc----------cCCcceeeeeeehhh
Confidence 11 1247889999998877776666655421 224567888898883
No 304
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.30 E-value=0.13 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-++++|++|+|||++++++....+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999887775
No 305
>PRK00625 shikimate kinase; Provisional
Probab=94.25 E-value=0.041 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
||+|+|.||+|||++++.+++.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~ 27 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999999987443
No 306
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.21 E-value=0.036 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.8
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
|+|.|.||+|||++++.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 307
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.10 E-value=0.057 Score=66.12 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=48.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eec---cCCCcc----cccceeeeecCCCCCccccccccccccCCceeecc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYT---SGKGSS----AVGLTAYVTKDPETGETVLESGALVLSDRGICCID 550 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t---~g~~~~----~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~ID 550 (806)
-++|.|.||||||++++.+...+... +.. +|+... ..|+.+...... ...+..+...+...-+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~---~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASL---EYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHH---HhhhccCcccCCCCcEEEEE
Confidence 57899999999999999998766432 110 011000 011111100000 00012222234566799999
Q ss_pred ccccCCHHHHHHHHHHHh
Q 003637 551 EFDKMSESARSMLHEVME 568 (806)
Q Consensus 551 Eidkm~~~~~~~L~e~Me 568 (806)
|+..++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999988777776544
No 308
>PRK03839 putative kinase; Provisional
Probab=94.05 E-value=0.046 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.|+|+|.||+|||++++.+++.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~ 27 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999987443
No 309
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.02 E-value=0.046 Score=54.86 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.|+|+|+||.|||++|+.|++.++-.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999999996443
No 310
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.96 E-value=0.067 Score=60.03 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=49.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eec---cCCCcccc--cceee-----eecCCCCCccccc---cccccccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYT---SGKGSSAV--GLTAY-----VTKDPETGETVLE---SGALVLSDR 544 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t---~g~~~~~~--glta~-----~~k~~~~ge~~le---~Gal~lAd~ 544 (806)
++++.|+.|||||.+++++...+... +.. +|.....+ |.|.. ............. .-.-.+..-
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 89999999999999999999887542 221 12111111 11110 0000000000000 011123344
Q ss_pred ceeeccccccCCHHHHHHHHHHHhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
.+++|||+-.++......+...|.+
T Consensus 104 ~~lIiDEism~~~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 104 DVLIIDEISMVSADMLDAIDRRLRD 128 (364)
T ss_pred eeeecccccchhHHHHHHHHHhhhh
Confidence 6899999999998887777766653
No 311
>PRK13949 shikimate kinase; Provisional
Probab=93.89 E-value=0.06 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=23.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~ 28 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS 28 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 79999999999999999999988443
No 312
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.89 E-value=0.11 Score=61.99 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=29.9
Q ss_pred hhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHC
Q 003637 451 LDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 451 ~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.+.-|.|+.+.+-.+ -++|.|+||||||++++.+...+
T Consensus 154 ~d~Qk~Av~~a~~~~---------------~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 154 VDWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CHHHHHHHHHHhcCC---------------eEEEEeCCCCCHHHHHHHHHHHH
Confidence 356677888777765 68999999999999887776543
No 313
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.87 E-value=0.066 Score=56.01 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=26.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCeeccC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIYTSG 511 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~t~g 511 (806)
..|+|+|+||+|||++++.+++...-.....|
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999998755444333
No 314
>PRK07261 topology modulation protein; Provisional
Probab=93.80 E-value=0.064 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
.|+++|+||+|||+|++.+++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998775
No 315
>PRK14530 adenylate kinase; Provisional
Probab=93.77 E-value=0.06 Score=55.64 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.+++..+-.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~ 30 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVE 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 79999999999999999999988543
No 316
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.72 E-value=0.064 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.1
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|+++|+||+|||++++.+++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999773
No 317
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.72 E-value=0.06 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 318
>PRK06762 hypothetical protein; Provisional
Probab=93.25 E-value=0.081 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=22.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-|+|+|.||+|||++++.+++.++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 319
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.25 E-value=0.084 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
+|+|+|+||+|||++++.+++...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999863
No 320
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.23 E-value=0.086 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=16.7
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999997666665554
No 321
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.19 E-value=0.17 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=23.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.++|.|+.|+|||++++.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999999853
No 322
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.16 E-value=0.13 Score=62.73 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=47.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC-----eec---cCCCcccccceeeeecCCCCCccccc--cccc------cccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG-----IYT---SGKGSSAVGLTAYVTKDPETGETVLE--SGAL------VLSDR 544 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~-----~~t---~g~~~~~~glta~~~k~~~~ge~~le--~Gal------~lAd~ 544 (806)
.++|.|.||||||++++.+...+... ++. +|+.. ..+.........|-...+. .+.. .....
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA--~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAA--KRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHH--HHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 69999999999999999998876432 221 11110 0010000000000000000 0100 01235
Q ss_pred ceeeccccccCCHHHHHHHHHHHhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~ 569 (806)
.+++|||+..++......|++++..
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhCCC
Confidence 7999999999998887777776543
No 323
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.13 E-value=0.097 Score=52.19 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCe
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGI 507 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~ 507 (806)
+|+|+|++|+|||++++.+++.+....
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l~~~~ 32 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcE
Confidence 799999999999999999999875443
No 324
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.13 E-value=0.41 Score=50.15 Aligned_cols=196 Identities=19% Similarity=0.182 Sum_probs=100.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC----eeccCCCcccccceeeeecCCCC-Cccccc-------ccccccc----CC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG----IYTSGKGSSAVGLTAYVTKDPET-GETVLE-------SGALVLS----DR 544 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~----~~t~g~~~~~~glta~~~k~~~~-ge~~le-------~Gal~lA----d~ 544 (806)
-+.++|+-|+|||.+.|++....++. ++......+..++.....-+-.. ..|... .+...+. .+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 68899999999999999877777653 12222222222222111111000 111111 1111111 12
Q ss_pred ceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIY 624 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~ 624 (806)
-++++||.+.+..+....|.-.++--.= .....+++-..-|.-.. +.+.... ..+..|+++-|
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~~----------~~~~l~ivL~Gqp~L~~-~lr~~~l------~e~~~R~~ir~ 195 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEED----------SSKLLSIVLIGQPKLRP-RLRLPVL------RELEQRIDIRI 195 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhccc----------ccCceeeeecCCcccch-hhchHHH------HhhhheEEEEE
Confidence 4789999999999888888776653110 01113344433332110 0011111 23335665531
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Q 003637 625 LILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYAR---KHIHPKLSDEAAEELTRGYVEMRRRGNFPG 701 (806)
Q Consensus 625 il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar---~~~~p~ls~ea~~~L~~~y~~lR~~~~~~g 701 (806)
...+++.+....||.+-- ....|.+++++...|...- . .|
T Consensus 196 -----------------------------~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~s-----q-g~-- 238 (269)
T COG3267 196 -----------------------------ELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEAS-----Q-GI-- 238 (269)
T ss_pred -----------------------------ecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHh-----c-cc--
Confidence 223333333333333211 1244678999988886541 1 12
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 003637 702 SSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVE 739 (806)
Q Consensus 702 n~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~ 739 (806)
+|....+...|.-.|..-..+.|+...+.
T Consensus 239 ---------P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 239 ---------PRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred ---------hHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 58888888888888877777777765543
No 325
>PRK06217 hypothetical protein; Validated
Probab=93.11 E-value=0.095 Score=52.67 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+|+|+|.||+|||++++.+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999998843
No 326
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.10 E-value=0.091 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.4
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
++|+|+||+|||++++.+++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999875
No 327
>PF13245 AAA_19: Part of AAA domain
Probab=93.06 E-value=0.096 Score=44.86 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=17.1
Q ss_pred ceEEECCCCChHH-HHHHHHHHHC
Q 003637 481 NILLVGDPGTSKS-QLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS-~la~~ia~~~ 503 (806)
-+++.|+|||||| ++++.++.+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455999999999 5666666655
No 328
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.095 Score=51.69 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=19.1
Q ss_pred ceEEECCCCChHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIH 500 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia 500 (806)
.|++.|-||||||++++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999999
No 329
>PRK14531 adenylate kinase; Provisional
Probab=93.03 E-value=0.095 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=22.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
.|+++|+||+|||++++.+++...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998863
No 330
>PRK14700 recombination factor protein RarA; Provisional
Probab=92.92 E-value=0.34 Score=52.17 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 003637 676 PKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAF 742 (806)
Q Consensus 676 p~ls~ea~~~L~~~y~~lR~~~~~~gn~~~~~~it~R~Leslirla~a~A~l~~~~~V~~~Dv~~ai 742 (806)
..+++++++.|.+.- .|. .|...++++++...+.-.....|+.+++++++
T Consensus 63 ~~i~~~al~~ia~~a---------~GD--------aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~ 112 (300)
T PRK14700 63 FKIDDGLYNAMHNYN---------EGD--------CRKILNLLERMFLISTRGDEIYLNKELFDQAV 112 (300)
T ss_pred CCcCHHHHHHHHHhc---------CCH--------HHHHHHHHHHHHhhccccCCCccCHHHHHHHH
Confidence 468999999998651 122 68888888886542211111137777777665
No 331
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.92 E-value=0.068 Score=67.13 Aligned_cols=84 Identities=15% Similarity=0.284 Sum_probs=51.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eec---cCCCc----ccccceeeeecCCCCCcccc--ccccccccCCceee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYT---SGKGS----SAVGLTAYVTKDPETGETVL--ESGALVLSDRGICC 548 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t---~g~~~----~~~glta~~~k~~~~ge~~l--e~Gal~lAd~GIl~ 548 (806)
-+++.|.+|||||++++.+...+... +.. +|+.. ...|+.+.... .|.+ ..|...+..+.+++
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIa-----s~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLS-----SWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHH-----HHHhhhccCccCCCCCcEEE
Confidence 58999999999999999998876332 211 01100 00122111100 1111 12333445567999
Q ss_pred ccccccCCHHHHHHHHHHHhh
Q 003637 549 IDEFDKMSESARSMLHEVMEQ 569 (806)
Q Consensus 549 IDEidkm~~~~~~~L~e~Me~ 569 (806)
|||...++......|+..++.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh
Confidence 999999999888888888764
No 332
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.90 E-value=0.08 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|+|+|+||+|||++++.+++.++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 333
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.86 E-value=0.33 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.9
Q ss_pred cccceEEECCCCChHHHHHHHHHHH
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~ 502 (806)
+.+.|+|+|++|+|||+|++.+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 3459999999999999999998865
No 334
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.17 Score=49.35 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=51.3
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCC---eeccCCCccc-------ccceeeeecCCCCCccc-cccccccccCCceee
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRG---IYTSGKGSSA-------VGLTAYVTKDPETGETV-LESGALVLSDRGICC 548 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~---~~t~g~~~~~-------~glta~~~k~~~~ge~~-le~Gal~lAd~GIl~ 548 (806)
-.+.|+|++|+|||+|++.++...+.. ++..|..... ..+... .. -..|+.. +........+..+++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~-~q-lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV-PQ-LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE-ee-CCHHHHHHHHHHHHHhcCCCEEE
Confidence 488999999999999999999887531 1111211100 001100 00 1112211 111122233568999
Q ss_pred ccccc-cCCHHHHHHHHHHHhh
Q 003637 549 IDEFD-KMSESARSMLHEVMEQ 569 (806)
Q Consensus 549 IDEid-km~~~~~~~L~e~Me~ 569 (806)
+||.. .++...+..+.+++.+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHH
Confidence 99986 6888888888888865
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.82 E-value=0.11 Score=50.94 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.5
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
--++|.||.|+|||+|++.++.+.+.
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 37899999999999999999998754
No 336
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=92.81 E-value=0.11 Score=64.91 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=46.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eeccC-CCccc------ccceeeeecCCCCCccccccccccccCCceeecc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYTSG-KGSSA------VGLTAYVTKDPETGETVLESGALVLSDRGICCID 550 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t~g-~~~~~------~glta~~~k~~~~ge~~le~Gal~lAd~GIl~ID 550 (806)
-++|.|.||||||++++.+...+... +.... .+..+ .|+.+..... .. .....|...+...-+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~s-ll--~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIAS-LE--HGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHH-HH--hhhcccccccccCcEEEEE
Confidence 46799999999999999887765321 11100 00000 0111100000 00 0011233334556799999
Q ss_pred ccccCCHHHHHHHHHHHh
Q 003637 551 EFDKMSESARSMLHEVME 568 (806)
Q Consensus 551 Eidkm~~~~~~~L~e~Me 568 (806)
|+..++......|+...+
T Consensus 441 EASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAA 458 (988)
T ss_pred CcccCCHHHHHHHHHhhh
Confidence 999999887777776554
No 337
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.70 E-value=0.074 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.6
Q ss_pred ccccceEEECCCCChHHHHHHHHH
Q 003637 477 RGDINILLVGDPGTSKSQLLQYIH 500 (806)
Q Consensus 477 rg~invLLvG~PGtGKS~la~~ia 500 (806)
+....+||+|+||+|||++|++++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 344579999999999999999885
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.64 E-value=0.09 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-|+++|+||+|||++++.+++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 339
>PRK14709 hypothetical protein; Provisional
Probab=92.63 E-value=0.78 Score=53.21 Aligned_cols=118 Identities=12% Similarity=0.155 Sum_probs=61.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
=++|+|+-|.|||++++.+..+++. | .+.+.+....... .+.. ......+...-+++.+|.+.=..-.
T Consensus 207 ~~~l~G~G~NGKSt~~~~i~~llG~--~-----~~~~~~~~~~~~~--~~~~--~~~lA~L~Gkrlv~~~E~~~g~~~~- 274 (469)
T PRK14709 207 LVFVFGGGGNGKSVFLNVLAGILGD--Y-----ATTAAMDTFTASK--HDRH--PTDLAMLRGARLVTASETEEGRAWA- 274 (469)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh--h-----cccCCHHHHhhcc--ccCC--chhhHhhcCCeEEEeecCCcccccC-
Confidence 5788899999999999999999843 1 1112222111000 0000 0111122333466778876422111
Q ss_pred HHHHHHHhh-cEEEEee-cceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcc
Q 003637 561 SMLHEVMEQ-QTVSIAK-AGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRF 620 (806)
Q Consensus 561 ~~L~e~Me~-q~isi~k-ag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRF 620 (806)
.+++..|-. -.|++.. .....++...+.++.++|-...-- .-..++.+|+
T Consensus 275 ~~~iK~ltGGD~i~ar~~~k~~f~f~p~~kl~~~~N~~P~~~----------d~d~g~~RR~ 326 (469)
T PRK14709 275 EARIKQMTGGDTITARFMRQDFFEFVPQFKLTIVGNHKPRLR----------NVDEAARRRF 326 (469)
T ss_pred HHHHHhhhCCCcEEeecccCCceEEEeeeEEEEEcCCCCccC----------CCCceeEeeE
Confidence 233344433 3455432 223345566788899999654221 1236777886
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.57 E-value=0.11 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.|+|.|+||+|||++++.+++.++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 68999999999999999999987543
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.56 E-value=0.13 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.5
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCe
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGI 507 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~ 507 (806)
|+++|+||+|||++++.+++.+.-..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~ 27 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPY 27 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 68999999999999999999874433
No 342
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.53 E-value=0.1 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.|+++|++|+|||+|++.++.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 4899999999999999999976643
No 343
>PRK14528 adenylate kinase; Provisional
Probab=92.51 E-value=0.12 Score=52.14 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|++.|+||+|||++++.+++...-.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~ 28 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIP 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999876433
No 344
>PRK14526 adenylate kinase; Provisional
Probab=92.42 E-value=0.13 Score=53.21 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+++|+|+||+|||++++.+++...-.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~ 27 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYY 27 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999999876443
No 345
>PLN02200 adenylate kinase family protein
Probab=92.40 E-value=0.15 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.1
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~p 504 (806)
...|+++|+||+|||++++.+++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998774
No 346
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.39 E-value=0.1 Score=53.11 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=46.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC----CeeccCCCcccccceeeee-cCCCCCccccccc--cccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR----GIYTSGKGSSAVGLTAYVT-KDPETGETVLESG--ALVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr----~~~t~g~~~~~~glta~~~-k~~~~ge~~le~G--al~lAd~GIl~IDEid 553 (806)
-+.|+|.+|+|||++++.++..+.. .++..+.... ..+..... ......++....+ +..+.+.|.++|..+.
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~~~ 104 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLVVLTAFI 104 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 7899999999999999999987632 1222221110 00000000 0000111111111 2223445666677777
Q ss_pred cCCHHHHHHHHHHHhh
Q 003637 554 KMSESARSMLHEVMEQ 569 (806)
Q Consensus 554 km~~~~~~~L~e~Me~ 569 (806)
.+....+..+.+.|.+
T Consensus 105 ~~~~~~R~~~r~~l~~ 120 (198)
T PRK03846 105 SPHRAERQMVRERLGE 120 (198)
T ss_pred CCCHHHHHHHHHHccc
Confidence 6667777777777754
No 347
>PRK13946 shikimate kinase; Provisional
Probab=92.26 E-value=0.16 Score=51.12 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.0
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
+.-+|+|+|.||+|||++++.+++.+....+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 3348999999999999999999999855433
No 348
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.26 E-value=0.061 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=19.9
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
-+.++||.|+|||+|+|++..+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998754
No 349
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.22 E-value=0.33 Score=53.97 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
.+|++|++|+|||++++++....+
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 899999999999999999988665
No 350
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.21 E-value=0.13 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.|+++|+||+|||++++.+++...-.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~ 26 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLP 26 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 38999999999999999999876443
No 351
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.12 E-value=0.15 Score=50.67 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.5
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
.+|.|+|.+|+|||++.+.+|+.+....+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 38999999999999999999999966544
No 352
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=92.11 E-value=0.34 Score=63.48 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC-CCeeccCCCcccccceeeeecCCCCCccccccccccc--cCCceeeccccccCCH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP-RGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVL--SDRGICCIDEFDKMSE 557 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p-r~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~l--Ad~GIl~IDEidkm~~ 557 (806)
.++++|++|+|||.++........ +.++- .+++...-+.....-...--....++...- -..-++|+||++.=..
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp~~ 206 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINMPAL 206 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheE--EeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCCchh
Confidence 899999999999999888777653 33222 111111111100000000000000111111 1123899999984322
Q ss_pred ------HHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCCCCCCCCCcccccccCCccccCcchhhhhhccCCC
Q 003637 558 ------SARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKAD 631 (806)
Q Consensus 558 ------~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli~il~d~~~ 631 (806)
.....|++.+|.+-+.-.+. ..-..--++.+++|+||..|. -+.+++-+.+.|-+ +..++++
T Consensus 207 ~~yg~q~~~~~lrq~~e~~g~~~~~~-~~~~~i~~i~~~~a~~~~~~g---------r~~i~~r~~r~f~~--~~~~~~~ 274 (1395)
T KOG3595|consen 207 DKYGDQPPIELLRQMLEHGGFYDRKK-SEWVEIENVQLVGAMNPPGGG---------RNDITERFLRHFLI--VSLNYPS 274 (1395)
T ss_pred hhcCCccHHHHHHHHHHhceeecccc-cceeEEeeeEEEeecCCCCCc---------cCcccHHHHHHeee--EeeCCCC
Confidence 23567888888766653322 233334568899999974332 35566777666633 4678899
Q ss_pred hHHHHHHHHHHHHhhhc
Q 003637 632 EQTDRRLAKHIVSLHFE 648 (806)
Q Consensus 632 ~~~d~~la~~il~~~~~ 648 (806)
.+.-..+..+++..|..
T Consensus 275 ~~sl~~if~~~~~~~~~ 291 (1395)
T KOG3595|consen 275 QESLTQIFNTILTGHLR 291 (1395)
T ss_pred hhhHHHHHHHHHhcccC
Confidence 99999999999886643
No 353
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.08 E-value=0.13 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-++|+|++|+|||++++.++..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998864
No 354
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.04 E-value=0.13 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+.|+|++|+|||+|++.++...+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 7899999999999999999887643
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.01 E-value=0.16 Score=50.26 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
+++|+|.||+|||++++.+++.+....+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV 31 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7899999999999999999998855433
No 356
>PRK02496 adk adenylate kinase; Provisional
Probab=92.00 E-value=0.13 Score=51.72 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.++++|+||+|||++++.+++...-
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987643
No 357
>PRK08233 hypothetical protein; Provisional
Probab=91.90 E-value=0.14 Score=51.01 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
=|.+.|+||+|||++++.++..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 578899999999999999999875
No 358
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.79 E-value=0.17 Score=52.02 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=30.7
Q ss_pred cchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 449 WELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 449 ~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+|++...+.|.-.+.++. ..+++|+|+.|+|||+|++.+.+....
T Consensus 2 ~gR~~el~~l~~~l~~~~------------~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 2 FGREKELEKLKELLESGP------------SQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CCHHHHHHHHHHHHHhhc------------CcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 566665555554444331 128999999999999999999998843
No 359
>PRK13948 shikimate kinase; Provisional
Probab=91.78 E-value=0.18 Score=50.74 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=24.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCCe
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRGI 507 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~~ 507 (806)
-+|+|+|.+|+|||++++.+++.+...+
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg~~~ 38 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALMLHF 38 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 3899999999999999999999885543
No 360
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.77 E-value=0.14 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=17.9
Q ss_pred eEEECCCCChHHHHHHHHHHH
Q 003637 482 ILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~ 502 (806)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.69 E-value=0.2 Score=55.47 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=23.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
|||++|++|+|||++++++....|.
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 9999999999999999999998875
No 362
>PRK06851 hypothetical protein; Provisional
Probab=91.64 E-value=0.18 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-++|.|+||||||+|++.++..+
T Consensus 216 ~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 216 RYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Confidence 58999999999999999999887
No 363
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.60 E-value=0.35 Score=48.49 Aligned_cols=83 Identities=18% Similarity=0.124 Sum_probs=49.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eeccCCCcccccceeeeecCC-C-CCccc-cccccccccCCceeeccccc-
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYTSGKGSSAVGLTAYVTKDP-E-TGETV-LESGALVLSDRGICCIDEFD- 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t~g~~~~~~glta~~~k~~-~-~ge~~-le~Gal~lAd~GIl~IDEid- 553 (806)
-+.|+|+.|+|||+|++.++.+.+.. ++..|. .+. .+.... . .|+.. +.-......+..++++||-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----~i~-~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-----TPV-YKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-----EEE-EEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 78899999999999999999987542 111111 011 111111 1 11111 11122233466899999975
Q ss_pred cCCHHHHHHHHHHHhh
Q 003637 554 KMSESARSMLHEVMEQ 569 (806)
Q Consensus 554 km~~~~~~~L~e~Me~ 569 (806)
.++...+..+.+++.+
T Consensus 101 ~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 101 YLDIEQRLNAARAIRR 116 (177)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6788888777777754
No 364
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.56 E-value=0.18 Score=52.02 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=24.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeec
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYT 509 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t 509 (806)
.|+++|+||+|||++++.+++...-..++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 58999999999999999999887554443
No 365
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=91.51 E-value=0.19 Score=50.45 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=21.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK 512 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~ 512 (806)
.|||+||+|+|||.|...+..-....-+|+-.
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e 36 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSME 36 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeecccc
Confidence 89999999999999999988875554444433
No 366
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.43 E-value=0.19 Score=41.20 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
..+|.|+.|+|||+|+.++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 367
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.41 E-value=0.3 Score=47.12 Aligned_cols=84 Identities=25% Similarity=0.325 Sum_probs=51.1
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCC---eeccCCCcccccceeeeecCCCCCccc-cccccccccCCceeeccccc-c
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRG---IYTSGKGSSAVGLTAYVTKDPETGETV-LESGALVLSDRGICCIDEFD-K 554 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~---~~t~g~~~~~~glta~~~k~~~~ge~~-le~Gal~lAd~GIl~IDEid-k 554 (806)
-.+.|+|++|+|||+|++.++...+.. ++..|. ..+. ++. .-..|+.. +.-......+.-++++||-. .
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~-~~~-~lS~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIG-YFE-QLSGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEE-EEc-cCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 378999999999999999999887531 221111 0011 111 01112211 11111223466899999975 7
Q ss_pred CCHHHHHHHHHHHhh
Q 003637 555 MSESARSMLHEVMEQ 569 (806)
Q Consensus 555 m~~~~~~~L~e~Me~ 569 (806)
++...+..+.+.+.+
T Consensus 101 LD~~~~~~l~~~l~~ 115 (144)
T cd03221 101 LDLESIEALEEALKE 115 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888899888875
No 368
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=91.38 E-value=0.27 Score=54.47 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=56.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCC-Cccccccee------eeec----CC-CCCcccccccc---c-cccCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK-GSSAVGLTA------YVTK----DP-ETGETVLESGA---L-VLSDR 544 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~-~~~~~glta------~~~k----~~-~~ge~~le~Ga---l-~lAd~ 544 (806)
.+.|+|+-|||||+|.-......|. +..... .+...=++. ...+ ++ ....|.+.+-. - ...+.
T Consensus 116 GlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa~ea 194 (467)
T KOG2383|consen 116 GLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIAEEA 194 (467)
T ss_pred eEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHhhhc
Confidence 6999999999999999887766554 111100 011000000 0000 00 00113333211 1 11234
Q ss_pred ceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
-++|+|||.-.+-.+.-.|...|+.- +...+.++||+|...
T Consensus 195 ~lLCFDEfQVTDVADAmiL~rLf~~L------------f~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 195 ILLCFDEFQVTDVADAMILKRLFEHL------------FKNGVVLVATSNRAP 235 (467)
T ss_pred eeeeechhhhhhHHHHHHHHHHHHHH------------HhCCeEEEEeCCCCh
Confidence 68999999887777766666666641 233466899999763
No 369
>PRK14529 adenylate kinase; Provisional
Probab=91.36 E-value=0.18 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.+++...-.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~ 27 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA 27 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 68999999999999999999988543
No 370
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=91.33 E-value=4.2 Score=42.73 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=66.3
Q ss_pred cceEEECCCC-ChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCC---CCc-cccc---c--ccc----cccCCc
Q 003637 480 INILLVGDPG-TSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPE---TGE-TVLE---S--GAL----VLSDRG 545 (806)
Q Consensus 480 invLLvG~PG-tGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~---~ge-~~le---~--Gal----~lAd~G 545 (806)
+.-|+.|+.+ ++|.-++.++++.+--.....|.. -.+... ..+.. .+. ...+ . ..+ ..+..-
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~H---PD~~~I-~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENN---PDYHFI-ARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCC---CCEEEE-eccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 3689999998 999999999988873210001110 011100 00000 000 0000 0 011 123456
Q ss_pred eeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceE-EEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 546 ICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS-VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 546 Il~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~s-iIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
|++|+++++|.....++|+..+|+- +..+. ++.|.| ...|++.++||+-.+
T Consensus 92 ViII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~--------------~~~LLpTIrSRCq~i 143 (263)
T PRK06581 92 VAIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSR--------------AASIISTIRSRCFKI 143 (263)
T ss_pred EEEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCC--------------hhhCchhHhhceEEE
Confidence 9999999999999999999999983 22333 444544 345778999998544
No 371
>PRK14527 adenylate kinase; Provisional
Probab=91.30 E-value=0.23 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-|+++|+||+|||++++.+++...-
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999987643
No 372
>PRK05439 pantothenate kinase; Provisional
Probab=91.30 E-value=0.39 Score=52.43 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=48.1
Q ss_pred ccCCCHHHHHHHHHHhcC------hhHHHHHHHhhcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCC
Q 003637 416 EIQFDESKIQQLKELSRQ------PNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPG 489 (806)
Q Consensus 416 ~~~~~~~~~~~i~~l~~~------~~~~~~l~~si~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PG 489 (806)
...+++++++.++.+... .++|--|++-|.=..-+...... ++-.+++.. ..+...-|.+.|+||
T Consensus 26 ~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~-~~~~fl~~~--------~~~~~~iIgIaG~~g 96 (311)
T PRK05439 26 PLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQA-ALEQFLGKN--------GQKVPFIIGIAGSVA 96 (311)
T ss_pred CCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHhccc--------CCCCCEEEEEECCCC
Confidence 356788888888776532 24565555544432223333322 222233321 112235788999999
Q ss_pred ChHHHHHHHHHHHCC
Q 003637 490 TSKSQLLQYIHKLSP 504 (806)
Q Consensus 490 tGKS~la~~ia~~~p 504 (806)
+|||++++.++..+.
T Consensus 97 sGKSTla~~L~~~l~ 111 (311)
T PRK05439 97 VGKSTTARLLQALLS 111 (311)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999874
No 373
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.26 E-value=0.24 Score=53.66 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=42.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeeeecCCCCCccccccccccccCCceeeccccccCCHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESAR 560 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~ 560 (806)
-+-|+|+.++|||++++.++...... . ++... .. +-..-++ +.....+...++|||+...++...
T Consensus 195 ~~hl~G~Ss~GKTt~~~~a~Sv~G~p-------~---~l~~s---w~-~T~n~le-~~a~~~nd~~l~lDE~~~~~~~~~ 259 (286)
T PF06048_consen 195 GFHLYGQSSSGKTTALQLAASVWGNP-------D---GLIRS---WN-STDNGLE-RTAAAHNDLPLVLDELSQADPKDV 259 (286)
T ss_pred EEEEEeCCCCCHHHHHHHhhhhCcCc-------h---hhhhc---ch-hhHHHHH-HHHHHcCCcceEehhccccchhHH
Confidence 67799999999999999999887433 2 11110 00 0011122 223345667899999999888754
Q ss_pred HHH
Q 003637 561 SML 563 (806)
Q Consensus 561 ~~L 563 (806)
..+
T Consensus 260 ~~~ 262 (286)
T PF06048_consen 260 GSI 262 (286)
T ss_pred HHH
Confidence 333
No 374
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.23 E-value=0.19 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-|+|+|+||+|||++++.+++.++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999999874
No 375
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.23 E-value=0.17 Score=50.95 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=23.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+++|+|++|+|||++++++....+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 8999999999999999999988754
No 376
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.17 E-value=0.15 Score=56.67 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=23.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
|||++|++|+|||++++++....|.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 9999999999999999999988765
No 377
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=91.08 E-value=0.11 Score=62.89 Aligned_cols=56 Identities=29% Similarity=0.476 Sum_probs=36.1
Q ss_pred hhHHHHHHHhhcccccc------hhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHC
Q 003637 434 PNIYETLTRSLAPNIWE------LDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 434 ~~~~~~l~~si~P~I~G------~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
|.+.+.+...+.|.+.- +++-+.|++.+|... -..|+.|-||||||+++-.+.+++
T Consensus 648 P~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~ae--------------dy~LI~GMPGTGKTTtI~~LIkiL 709 (1100)
T KOG1805|consen 648 PKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALAAE--------------DYALILGMPGTGKTTTISLLIKIL 709 (1100)
T ss_pred chhhcccccccCchhhHHHHhhcCHHHHHHHHHHHhcc--------------chheeecCCCCCchhhHHHHHHHH
Confidence 33333344444444443 334455666655544 289999999999999888777776
No 378
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.06 E-value=0.16 Score=49.60 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.9
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCCeeccCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRGIYTSGK 512 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~~~t~g~ 512 (806)
|-+-|+||+|||++++.+++.+.-..+.+|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 5678999999999999999998555444443
No 379
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.00 E-value=0.16 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-++|+|++|+|||++++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 5889999999999999999997644
No 380
>PRK04040 adenylate kinase; Provisional
Probab=90.96 E-value=0.18 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
.|+++|.||+|||++++.+++.++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999885
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.96 E-value=0.62 Score=52.22 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.6
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.-.++|+||+|+|||+++..++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999988753
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.92 E-value=0.2 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEECCCCChHHHHHHHHHHHCCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+.|+|++|+|||+|++.+++..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 689999999999999999998754
No 383
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=90.78 E-value=0.18 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.2
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
++|+|.||+|||++++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 384
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.71 E-value=0.2 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
++|+|+|+||+|||+|++++++-.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 579999999999999999987544
No 385
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.64 E-value=0.21 Score=50.97 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-+.|+|++|+|||+|++.++...+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999999876
No 386
>PF13479 AAA_24: AAA domain
Probab=90.61 E-value=0.17 Score=52.21 Aligned_cols=27 Identities=33% Similarity=0.741 Sum_probs=22.3
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCCCCeec
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYT 509 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~pr~~~t 509 (806)
.+.+||+|+||+|||+++..+ ++.+|.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 468999999999999999887 665543
No 387
>PLN02459 probable adenylate kinase
Probab=90.57 E-value=0.26 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.+++|+|+||+||+++++.+++...-.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~ 56 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVP 56 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 479999999999999999999987443
No 388
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.50 E-value=0.19 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
=|.|+|++|||||+|++.|+.+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6899999999999999999987643
No 389
>PLN02674 adenylate kinase
Probab=90.47 E-value=0.29 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+|+|+|+||+||+++++.+++...-
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~~~ 57 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEYCL 57 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 7999999999999999999997743
No 390
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=90.37 E-value=0.21 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.4
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
.+|+|+|+||+|||+|++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988754
No 391
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.30 E-value=0.63 Score=50.31 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.3
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.-.++|+|++|+|||+++..++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999998888765
No 392
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.26 E-value=0.24 Score=49.32 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p 504 (806)
..|+|+|.||+|||++++.+++.+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998874
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.25 E-value=0.22 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.3
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
+|+.|+||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999887765543
No 394
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=90.18 E-value=0.22 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.4
Q ss_pred ceEEECCCCChHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~ 501 (806)
.|+++|.||+|||+|++++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999995
No 395
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.10 E-value=0.24 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.2
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
+.|+++|+||+|||+|+..+...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988754
No 396
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.03 E-value=0.21 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.2
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|+|+|.||+|||++++.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 397
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=89.98 E-value=0.24 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.2
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
+.|+++|++|+|||+|++.+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999987764
No 398
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=89.92 E-value=0.57 Score=51.34 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=26.1
Q ss_pred cccceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
..-+|.|+|.||+|||++++.+++.+...++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3448999999999999999999998855443
No 399
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.76 E-value=0.31 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-+++.|.||+|||++++.++..+.-
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~~ 29 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRAI 29 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999998744
No 400
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.75 E-value=0.21 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=22.0
Q ss_pred eEEECCCCChHHHHHHHHHHHCCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr 505 (806)
|+|.|.||+|||++++.+++.+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 789999999999999999999843
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=89.74 E-value=0.39 Score=47.23 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=46.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccC-CCcccccceeeee-------c-CCCCCccccc--ccccccc---CCce
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSG-KGSSAVGLTAYVT-------K-DPETGETVLE--SGALVLS---DRGI 546 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g-~~~~~~glta~~~-------k-~~~~ge~~le--~Gal~lA---d~GI 546 (806)
.++++||.|.|||.+++++.-...-...... ......|+..... . .-..|+.... +-++..+ ...+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l 102 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRPL 102 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCCE
Confidence 7899999999999999997655422110000 0000111111000 0 0112221111 1122222 4579
Q ss_pred eecccccc-CCHHHHHHHHHHHhh
Q 003637 547 CCIDEFDK-MSESARSMLHEVMEQ 569 (806)
Q Consensus 547 l~IDEidk-m~~~~~~~L~e~Me~ 569 (806)
+++||..+ +++..+..+.+++.+
T Consensus 103 lllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 103 YILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999865 677777777776654
No 402
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=89.73 E-value=1.9 Score=43.79 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=60.1
Q ss_pred ceeeccccccCCHHHHHHHHHHHhhcEEEEeecceeeeecCc-eEEEEecCCCCCCCCCCCcccccccCCccccCcchhh
Q 003637 545 GICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNAR-TSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLI 623 (806)
Q Consensus 545 GIl~IDEidkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~-~siIAAaNp~~g~~~~~~~~~~~i~lp~~LlsRFDli 623 (806)
+.++|+++++|+...+++|+..+|+- +.. +.+++|.+ ...+++.++||+-.+
T Consensus 56 ~k~iI~~a~~l~~~A~NaLLK~LEEP-------------p~~~~fiL~t~~--------------~~~llpTI~SRc~~~ 108 (206)
T PRK08485 56 EKIIVIAAPSYGIEAQNALLKILEEP-------------PKNICFIIVAKS--------------KNLLLPTIRSRLIIE 108 (206)
T ss_pred cEEEEEchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEeCC--------------hHhCchHHHhhheec
Confidence 44578999999999999999999982 223 33555554 455778999998544
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhcCCCCccCCCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 003637 624 YLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSDEAAEELTRGY 690 (806)
Q Consensus 624 ~il~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~Lk~yi~~ar~~~~p~ls~ea~~~L~~~y 690 (806)
...... ...+.......++.+.+-.++....+ ......+++.+.|...+
T Consensus 109 ~~~~~~-----------------~~~~l~l~l~~l~~~~i~~~L~~~~k-e~~~~~~ea~~lIa~la 157 (206)
T PRK08485 109 KRKQKK-----------------PVKPLDLDLKKLDLKDIYEFLKELEK-ENKLSKEELKELIESLL 157 (206)
T ss_pred cccccc-----------------cccccccccCCCCHHHHHHHHHHHHH-cccccHHHHHHHHHHHH
Confidence 111000 00111234456777777777665322 22234556666666554
No 403
>PRK06547 hypothetical protein; Provisional
Probab=89.72 E-value=0.34 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-|++.|++|+|||++++.+++..
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67888999999999999999875
No 404
>COG1485 Predicted ATPase [General function prediction only]
Probab=89.69 E-value=0.32 Score=53.26 Aligned_cols=98 Identities=19% Similarity=0.251 Sum_probs=54.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCc------ccccceeeeecCCCCCcc-ccccccc-cccCCceeecccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGS------SAVGLTAYVTKDPETGET-VLESGAL-VLSDRGICCIDEF 552 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~------~~~glta~~~k~~~~ge~-~le~Gal-~lAd~GIl~IDEi 552 (806)
.+.|.|+-|.|||.|+-.....+|-..-. -..+ +.-.+.... |+. -+.+-+- ..++--++|+|||
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~-R~HFh~FM~~vH~~l~~l~------g~~dpl~~iA~~~~~~~~vLCfDEF 139 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGERKR-RLHFHRFMARVHQRLHTLQ------GQTDPLPPIADELAAETRVLCFDEF 139 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCccccc-cccHHHHHHHHHHHHHHHc------CCCCccHHHHHHHHhcCCEEEeeee
Confidence 69999999999999999999988753100 0000 001111110 111 0111111 1234569999999
Q ss_pred ccCCHHHHHHHHHHHhhcEEEEeecceeeeecCceEEEEecCCCC
Q 003637 553 DKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSG 597 (806)
Q Consensus 553 dkm~~~~~~~L~e~Me~q~isi~kag~~~~l~~~~siIAAaNp~~ 597 (806)
.--+..+--.|...|+.= +.-.++++||+|...
T Consensus 140 ~VtDI~DAMiL~rL~~~L------------f~~GV~lvaTSN~~P 172 (367)
T COG1485 140 EVTDIADAMILGRLLEAL------------FARGVVLVATSNTAP 172 (367)
T ss_pred eecChHHHHHHHHHHHHH------------HHCCcEEEEeCCCCh
Confidence 876666543333333321 122366999999653
No 405
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.67 E-value=0.27 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.7
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
|.|.|++|+|||++++.++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 406
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=89.63 E-value=1.1 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.3
Q ss_pred ceEEECCCCChHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~ 501 (806)
-++|+|+.|.|||++++.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 589999999999999999984
No 407
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=89.61 E-value=0.7 Score=57.04 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=45.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccccceeee-ecCCCCCcccc------ccccccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV-TKDPETGETVL------ESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~glta~~-~k~~~~ge~~l------e~Gal~lAd~GIl~IDEid 553 (806)
-+|++|+||+|||+.+..+++...-.++-.+..-...+.-... ..+....+... ..+.....+.+++++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 3799999999999999999998865443222111110000000 00000001000 0011112344699999999
Q ss_pred cCCHHHHHHHHH
Q 003637 554 KMSESARSMLHE 565 (806)
Q Consensus 554 km~~~~~~~L~e 565 (806)
-|..+++..+.+
T Consensus 439 ~~~~~dRg~v~~ 450 (871)
T KOG1968|consen 439 GMFGEDRGGVSK 450 (871)
T ss_pred cccchhhhhHHH
Confidence 999877765544
No 408
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=89.61 E-value=0.27 Score=46.36 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=20.4
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
++|+++|++|+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999888754
No 409
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=89.60 E-value=0.29 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-++|+|++|+|||+|+.++....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999988653
No 410
>PRK04182 cytidylate kinase; Provisional
Probab=89.51 E-value=0.35 Score=47.83 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
.|+|.|.||+|||++++.+++.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 58999999999999999999987543
No 411
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=89.43 E-value=0.29 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
+.|+++|++|+|||+|++.+...-
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999887643
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.42 E-value=1.5 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
.+++.|++|+|||++++++....+
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 799999999999999998876664
No 413
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=89.42 E-value=0.29 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+|+++|+||+|||+|++.+...-
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 79999999999999999987543
No 414
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=89.40 E-value=0.27 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+|+++|++|+|||+|+..+....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 58999999999999999987643
No 415
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=89.37 E-value=0.25 Score=57.05 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.2
Q ss_pred ccccccceEEECCCCChHHHHHHHHHHHCC
Q 003637 475 SFRGDINILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 475 ~~rg~invLLvG~PGtGKS~la~~ia~~~p 504 (806)
.+..+-|+|++||.|||||.|+|.++.+.|
T Consensus 457 ~V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 457 EVPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred EecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 345567999999999999999999998876
No 416
>PRK01184 hypothetical protein; Provisional
Probab=89.36 E-value=0.34 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-|+|+|+||+|||++++ +++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 58899999999999988 44444
No 417
>PLN02165 adenylate isopentenyltransferase
Probab=89.32 E-value=0.42 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCee
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGIY 508 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~~ 508 (806)
.++|+|++|+|||+|+..+++.++..+.
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eII 72 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEII 72 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCcee
Confidence 7899999999999999999999865443
No 418
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.31 E-value=0.3 Score=46.89 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|+||+|||+|++.+..-
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999888753
No 419
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=89.27 E-value=0.29 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.6
Q ss_pred ccceEEECCCCChHHHHHHHHHHH
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~ 502 (806)
.+.|+++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 420
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.26 E-value=0.33 Score=47.64 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
-|.+.|++|+|||++++.+++.+.-.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 47899999999999999999987443
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.23 E-value=0.33 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=23.0
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
..-|.|.|++|+|||+|++.+++.+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999987
No 422
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.21 E-value=0.3 Score=47.21 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.1
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
+.|+++|+||+|||+|++.+...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999988744
No 423
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=89.20 E-value=0.3 Score=51.80 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.9
Q ss_pred cceEEECCCCChHHHHHHHHHHHCCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
--+.|+||.|+|||+|+|+++.+++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCC
Confidence 37899999999999999999987743
No 424
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=89.18 E-value=0.31 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.4
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
..|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999887764
No 425
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.16 E-value=0.23 Score=53.10 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=45.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC---eec-cCC---CcccccceeeeecCCCCCccccccccccccCCceeeccccc
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG---IYT-SGK---GSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFD 553 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~---~~t-~g~---~~~~~glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEid 553 (806)
+|++.|++|+|||++++++....+.. +.+ ... .....+......+ .....+.---......+.-+++|+|+.
T Consensus 129 ~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~-~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 129 NILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTR-RDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEE-TTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred EEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEee-cCcccHHHHHHHHhcCCCCcccccccC
Confidence 99999999999999999999998764 111 000 0001111111111 000011000011233455799999998
Q ss_pred cCCHHHHHHHHHHHhhcEE
Q 003637 554 KMSESARSMLHEVMEQQTV 572 (806)
Q Consensus 554 km~~~~~~~L~e~Me~q~i 572 (806)
.. +.... .++++.|..
T Consensus 208 ~~--e~~~~-~~a~~tGh~ 223 (270)
T PF00437_consen 208 DP--EAAEA-IQAANTGHL 223 (270)
T ss_dssp SC--HHHHH-HHHHHTT-E
T ss_pred CH--hHHHH-HHhhccCCc
Confidence 64 33344 778887643
No 426
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=89.15 E-value=0.31 Score=46.25 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+|+++|+||+|||+|+..+...-
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999887554
No 427
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.14 E-value=0.35 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.7
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p 504 (806)
.-|.|+|++|+|||+|++.++..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999875
No 428
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=89.04 E-value=0.31 Score=47.74 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.0
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
+.|+++|+||+|||+|+..+...-
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCc
Confidence 489999999999999999887643
No 429
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.01 E-value=0.3 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=22.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
++|++|++|+|||++++++....+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998874
No 430
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.97 E-value=0.28 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-+.|+||.|||||+++|.||.+-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678899999999999999997653
No 431
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=88.96 E-value=0.32 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.6
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
++|+++|++|+|||+|+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999988864
No 432
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.81 E-value=0.31 Score=48.39 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=22.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-|.|+|.||+|||++++.++..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998873
No 433
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=88.73 E-value=0.37 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+.|+|++|+|||++++.++.....
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999998743
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.57 E-value=0.33 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=23.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
+++++|++|+|||++++++....|.
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCc
Confidence 9999999999999999999988864
No 435
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.50 E-value=0.34 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
|+|++|++|+|||++++++....
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 436
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=88.47 E-value=0.36 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
-|+++|+||+|||+|++.+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
No 437
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.46 E-value=0.64 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.3
Q ss_pred cceEEECCCCChHHHHHHHHHHHCC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~p 504 (806)
.-|.|.|++|+|||++++.+..++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999988874
No 438
>PRK10536 hypothetical protein; Provisional
Probab=88.42 E-value=0.53 Score=49.88 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.3
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.++++|++|||||.|+.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999998873
No 439
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=88.42 E-value=0.35 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
+|+++|++|+|||+|++.+...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999888653
No 440
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=88.30 E-value=0.46 Score=48.61 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.4
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.-++++|+||+|||+++..++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999998877554
No 441
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=88.29 E-value=0.36 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4899999999999999988754
No 442
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=88.27 E-value=0.32 Score=46.95 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 5899999999999999988764
No 443
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=88.21 E-value=0.36 Score=47.06 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=18.2
Q ss_pred ceEEECCCCChHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~ 501 (806)
+|+++|++|+|||+|+..+..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~ 22 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD 22 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999966653
No 444
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.16 E-value=1.2 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred ccceEEECCCCChHHHHHHHHHHHCC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~p 504 (806)
...|+|+|++|+|||+++..++..+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45899999999999999988887764
No 445
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=88.16 E-value=0.38 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
+.|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988764
No 446
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=88.13 E-value=0.57 Score=55.66 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=38.2
Q ss_pred hcccccchhhhHHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 444 LAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 444 i~P~I~G~e~vK~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.-|..+...+|-+ +|..++.. +.+....|+|+|.||+|||++++.+++.+..
T Consensus 367 ~pP~~f~rpeV~~-iL~~~~~~---------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVA-ELRRTYPP---------RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHH-HHHHHhcc---------ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4566777777766 66555543 1223348999999999999999999998853
No 447
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=88.04 E-value=0.35 Score=45.97 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.1
Q ss_pred eEEECCCCChHHHHHHHHHHH
Q 003637 482 ILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~ 502 (806)
|+|+|++|+|||+|++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999998765
No 448
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=88.02 E-value=0.4 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|++|+|||+|+..+...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 449
>PRK14737 gmk guanylate kinase; Provisional
Probab=87.99 E-value=0.45 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
-+.|+||+|+|||+|++.+.+..|.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCc
Confidence 6899999999999999999887654
No 450
>PRK13695 putative NTPase; Provisional
Probab=87.99 E-value=0.42 Score=47.54 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+++|+|+||+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987654
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=87.94 E-value=0.4 Score=43.91 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.7
Q ss_pred ceEEECCCCChHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIH 500 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia 500 (806)
-++|+|++|+|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999976
No 452
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=87.85 E-value=0.4 Score=46.70 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
+|.|+|.||+|||+|++.+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999753
No 453
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.79 E-value=0.34 Score=45.75 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
.+.|+|++|+|||+|++.++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 89999999999999999988655
No 454
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=87.78 E-value=0.39 Score=46.66 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.3
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
.+|+++|+||+|||+|++.+...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998643
No 455
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=87.66 E-value=0.44 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.1
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
+.|+++|+||+|||+|+..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 48999999999999999877654
No 456
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.66 E-value=0.39 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.4
Q ss_pred eEEECCCCChHHHHHHHHHHHCCCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
|.|.|++|+|||++|+.++..+...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6789999999999999999999643
No 457
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.64 E-value=0.62 Score=47.28 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=15.6
Q ss_pred eEEECCCCChHHHHHHHH-H-HH--CCCCeecc
Q 003637 482 ILLVGDPGTSKSQLLQYI-H-KL--SPRGIYTS 510 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~i-a-~~--~pr~~~t~ 510 (806)
.|++|.||+|||..|-.. . .. ..|.+|+.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~tn 35 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYTN 35 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEEc
Confidence 589999999999876443 2 22 25667763
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.64 E-value=0.44 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=20.8
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-++|+|++|+|||+|++.+.+..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCC
Confidence 688999999999999999986543
No 459
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=87.59 E-value=0.41 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.6
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
..|+++|+||+|||+|+..+...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 48999999999999999998754
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=87.58 E-value=0.46 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=22.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~p 504 (806)
-|.|.|.+|+|||++++.+++.+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999884
No 461
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=87.56 E-value=0.44 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.6
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|.++|+||+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 462
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.53 E-value=0.42 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
+++++|++|+|||++++++....
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999999999998763
No 463
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=87.51 E-value=0.57 Score=48.59 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCCe
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRGI 507 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~~ 507 (806)
.|.|.|++|+|||++++.+++.++-..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~ 30 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAY 30 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 688999999999999999998875443
No 464
>PLN02199 shikimate kinase
Probab=87.50 E-value=0.56 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|.+|+|||++++.+++.+...
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~ 129 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYT 129 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999987444
No 465
>COG5545 Predicted P-loop ATPase and inactivated derivatives [General function prediction only]
Probab=87.47 E-value=0.24 Score=54.02 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=89.0
Q ss_pred HHhhcccccchhhh---HHHHhhhhcCCccccCCCCCccccccceEEECCCCChHHHHHHHHHHHCCCCeeccCCCcccc
Q 003637 441 TRSLAPNIWELDDV---KKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAV 517 (806)
Q Consensus 441 ~~si~P~I~G~e~v---K~~ill~L~g~~~~~~~~~~~~rg~invLLvG~PGtGKS~la~~ia~~~pr~~~t~g~~~~~~ 517 (806)
+.+++|..+|-.+- .++..|.++|.+.+....|. .-+.-+.|+|+-|.+||+++.-++ ...-||...
T Consensus 163 ~~~l~~dyfGa~ds~l~~~~~k~f~VgAVarv~~Pg~--K~Df~l~L~G~Qgs~KsTfl~~l~---G~~wftd~~----- 232 (517)
T COG5545 163 VETLLIDYFGASDSTLARQASKCFMVGAVARVLWPGA--KVDFMLVLEGPQGSHKSTFLSELF---GTYWFTDTA----- 232 (517)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhCCCC--cceeEEEEecCCCCCccchHHHhc---Cceeeeccc-----
Confidence 67899999997654 44556888888877665443 345678899999999999886554 333333211
Q ss_pred cceeeeecCCCCCccccccccccccCCceeeccccccCCHHHHHHHHHHHhhcEEEEee--cceeeeecCceEEEEecCC
Q 003637 518 GLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAK--AGIIASLNARTSVLACANP 595 (806)
Q Consensus 518 glta~~~k~~~~ge~~le~Gal~lAd~GIl~IDEidkm~~~~~~~L~e~Me~q~isi~k--ag~~~~l~~~~siIAAaNp 595 (806)
. .+....+. ++....=|+=+||++.....+-+.|.-++-+.+.++.. ......+.-.|.+++|+|-
T Consensus 233 --~-----~~t~KD~~-----~~i~~~wive~~Em~s~~K~dvt~lK~fitr~~dsfRaPYgt~~e~y~r~~V~vgTTN~ 300 (517)
T COG5545 233 --E-----SPTGKDFY-----QVIQGCWIVEIGEMDSFGKADVTALKVFITRRTDSFRAPYGTLPESYRRECVFVGTTND 300 (517)
T ss_pred --c-----CCCcchHH-----HHHhhhheeehhhhhhhcCCCHHHHHHHHHHhhhhhcCcccCChhhcccceEEEeccch
Confidence 1 11011111 11111125667888877777778888888887777632 2234456777999999997
Q ss_pred CCCCCC
Q 003637 596 SGSRYN 601 (806)
Q Consensus 596 ~~g~~~ 601 (806)
.+..+|
T Consensus 301 ~EylkD 306 (517)
T COG5545 301 REYLKD 306 (517)
T ss_pred HHhhcc
Confidence 765555
No 466
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=87.46 E-value=0.46 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.9
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
..|+++|++|+|||+|++.+..-
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999887653
No 467
>PRK08356 hypothetical protein; Provisional
Probab=87.35 E-value=0.46 Score=48.24 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=19.2
Q ss_pred ceEEECCCCChHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~ 501 (806)
.|+|+|+||+|||++++++.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 468
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.32 E-value=0.46 Score=48.62 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-.-|+||.|||||+++|.+-++-
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhc
Confidence 56789999999999999998875
No 469
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=87.32 E-value=0.44 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.7
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|++|+|||+|+..+..-
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 470
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=87.32 E-value=0.44 Score=45.92 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
-|+|+|+.|+|||+|++++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998864
No 471
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=87.29 E-value=0.39 Score=46.48 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=18.6
Q ss_pred EECCCCChHHHHHHHHHHHC
Q 003637 484 LVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 484 LvG~PGtGKS~la~~ia~~~ 503 (806)
|+|+||+||+++++.+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 472
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=87.22 E-value=0.46 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
+.|+++|++|+|||+|+..+..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 473
>PRK13808 adenylate kinase; Provisional
Probab=87.19 E-value=0.58 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPRG 506 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr~ 506 (806)
+|+|+|+||+|||++++.|++...-.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~ 27 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIV 27 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 68999999999999999999887443
No 474
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=87.18 E-value=0.45 Score=46.92 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.7
Q ss_pred cccceEEECCCCChHHHHHHHHHH
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 478 g~invLLvG~PGtGKS~la~~ia~ 501 (806)
.-+.|+++|++|+|||+|++.+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~ 26 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLG 26 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999988765
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.16 E-value=0.43 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
=+.|.||.|||||+++|.||.+-
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999765
No 476
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=87.14 E-value=0.44 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.7
Q ss_pred ceEEECCCCChHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~ 501 (806)
.|.|+|+||+|||+|+..+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~ 22 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG 22 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999988763
No 477
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.14 E-value=0.54 Score=45.73 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.8
Q ss_pred ccceEEECCCCChHHHHHHHHHHH
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~ 502 (806)
+..|||+|++|.|||+++..+.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 348999999999999999877764
No 478
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=87.12 E-value=0.46 Score=46.25 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=19.5
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
..|+++|++|+|||+|+..+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999988864
No 479
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=87.11 E-value=0.35 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=22.2
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
+.+||++|++|+|||++++.+....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcc
Confidence 4599999999999999999998754
No 480
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=87.08 E-value=0.48 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=18.7
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
+.|+++|+||+|||+|+..+..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999865554
No 481
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=0.33 Score=55.36 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.6
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
-..+||.|+||+|||.||-.++..+
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S 562 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS 562 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc
Confidence 3589999999999999999999877
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.99 E-value=0.61 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+||+|+||||||+|++.+++.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999998886643
No 483
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.92 E-value=1.5 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.0
Q ss_pred ccceEEECCCCChHHHHHHHHHHHC
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 479 ~invLLvG~PGtGKS~la~~ia~~~ 503 (806)
..-++|+|++|+|||+++..++..+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3478899999999999999998876
No 484
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=86.81 E-value=1.7 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.8
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.-|+|+|++|+|||+++..++..+
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999888888765
No 485
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=86.80 E-value=0.48 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
-.+.|+|+.|+|||+|++.++.+.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999765
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=86.71 E-value=0.77 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=20.9
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|.+.|.||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999873
No 487
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=86.69 E-value=0.54 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.4
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|++|+|||+|++.+..-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999887643
No 488
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=86.66 E-value=0.67 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHCCC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~pr 505 (806)
.+|+.|+||+|||+++..++...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~ 27 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL 27 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC
Confidence 5899999999999999999987643
No 489
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=86.61 E-value=0.5 Score=46.04 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.5
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
..|+++|++|+|||+|++.+..
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999999988753
No 490
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=86.54 E-value=0.52 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEECCCCChHHHHHHHHHHHCC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLSP 504 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~p 504 (806)
|.+.|.||+|||++++.++..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 491
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=86.52 E-value=0.52 Score=45.49 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=19.7
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|++|+|||+|+..+...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 492
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.52 E-value=0.5 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.3
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
.+.|+|+.|+|||+|++.++.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999765
No 493
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=86.50 E-value=0.54 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEECCCCChHHHHHHHHHHHC
Q 003637 481 NILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~~ 503 (806)
-|+|+|-||+|||+||+.+.+.+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 494
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=86.44 E-value=0.53 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.3
Q ss_pred ceEEECCCCChHHHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia~~ 502 (806)
.|+++|+||+|||+|++.+...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999987643
No 495
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=86.40 E-value=0.55 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.3
Q ss_pred ceEEECCCCChHHHHHHHHH
Q 003637 481 NILLVGDPGTSKSQLLQYIH 500 (806)
Q Consensus 481 nvLLvG~PGtGKS~la~~ia 500 (806)
.|+++|++|+|||+|+..+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~ 20 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFL 20 (165)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 48999999999999986664
No 496
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=86.34 E-value=0.57 Score=44.60 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=19.6
Q ss_pred cceEEECCCCChHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHK 501 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~ 501 (806)
..|+++|++|+|||+++.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~ 23 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAG 23 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999998864
No 497
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=1.8 Score=51.59 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.0
Q ss_pred cccccceEEECCCCChHHHHHHHHHHHCCC
Q 003637 476 FRGDINILLVGDPGTSKSQLLQYIHKLSPR 505 (806)
Q Consensus 476 ~rg~invLLvG~PGtGKS~la~~ia~~~pr 505 (806)
++..-.+.||||.|.|||+++..+.++-..
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 334448999999999999999999988754
No 498
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.30 E-value=0.69 Score=47.96 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.5
Q ss_pred cceEEECCCCChHHHHHHHHHHHC
Q 003637 480 INILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~~ 503 (806)
.-++++|+||+|||+++..++...
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999998887643
No 499
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=86.28 E-value=0.55 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred eEEECCCCChHHHHHHHHHHHC
Q 003637 482 ILLVGDPGTSKSQLLQYIHKLS 503 (806)
Q Consensus 482 vLLvG~PGtGKS~la~~ia~~~ 503 (806)
|+++|++|+|||+|++.+...-
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7999999999999998877643
No 500
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=86.28 E-value=0.68 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=19.2
Q ss_pred cceEEECCCCChHHHHHHHHHHH
Q 003637 480 INILLVGDPGTSKSQLLQYIHKL 502 (806)
Q Consensus 480 invLLvG~PGtGKS~la~~ia~~ 502 (806)
..+|+.|+||+|||.++..++..
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999988765543
Done!