Query 003637
Match_columns 806
No_of_seqs 373 out of 3435
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:35:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003637.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1685-1688//hhsearch_pdb/003637hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 1.0 1 1 827.0 36.1 585 129-753 3-595 (595)
2 3f8t_A Predicted ATPase involv 1.0 1 1 602.2 27.5 389 310-767 108-505 (506)
3 1ltl_A DNA replication initiat 1.0 1 1 422.8 26.4 270 124-442 8-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 1.0 1 1 409.2 24.2 251 129-395 9-267 (268)
5 3nbx_X ATPase RAVA; AAA+ ATPas 1.0 1 1 204.6 18.5 267 435-743 11-284 (500)
6 2r44_A Uncharacterized protein 1.0 1 1 198.3 28.8 278 434-745 15-297 (331)
7 1g8p_A Magnesium-chelatase 38 1.0 1 1 196.6 13.6 264 447-747 25-324 (350)
8 3k1j_A LON protease, ATP-depen 1.0 1 1 179.4 14.3 241 447-744 42-374 (604)
9 1ny5_A Transcriptional regulat 1.0 1 1 172.5 13.8 202 478-741 159-383 (387)
10 1ojl_A Transcriptional regulat 1.0 1 1 169.9 15.4 201 479-741 25-248 (304)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=826.98 Aligned_cols=585 Identities=36% Similarity=0.637 Sum_probs=535.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999999997531000000588422100114999999998707949999330361128799999986979999999999
Q 003637 129 DVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIV 208 (806)
Q Consensus 129 ~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~a 208 (806)
|+++.|++||++|.+.. +.++|+++|++|+..++.+|.||+.||.+|+++|+.+|+++|.+++++|+.|
T Consensus 3 ~~~~~f~~Fl~~~~~~~-----------~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a 71 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNN-----------NQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGA 71 (595)
T ss_dssp CHHHHHHHHHHHCCTTT-----------TSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHCHHHHHHHHHHH
T ss_conf 79999999998612358-----------9724999999999749958999969976349999999997989999999999
Q ss_pred HHHHHHHHCCCC---CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECC--CCCCCCCEE
Q ss_conf 999999627656---772899994168855777889358793699998999725663057878998234--576678647
Q 003637 209 LMDIVSLINPLF---EKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLV--CGYYSDPIV 283 (806)
Q Consensus 209 i~e~~~~~~~~~---~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~--C~~~~~~~~ 283 (806)
+++++....+.+ .+++++|++|+|...++|+|++.++|+||+|+|+|+|+|.|+|+++.++|.|.. |++.+. ++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~-~~ 150 (595)
T 3f9v_A 72 LYDHILQLDPTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFE-WP 150 (595)
T ss_dssp HHHHHHHHCGGGTTTCCCCCCCEECCSCEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCC-SS
T ss_pred HHHHHHHHCHHHHHCCCEEEEEEECCCCCCCHHHCCHHHCCCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCEEE-EE
T ss_conf 99999863625550366399999579887775445443289289999999993677889999999834778997899-98
Q ss_pred ---ECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf ---51786569866686223899942673164210003689985189999999997299999444433567999889999
Q 003637 284 ---VDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVT 360 (806)
Q Consensus 284 ---~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~p~~~p~G~~Prsi~V~l~~dLvd~~~pGd~V~Vt 360 (806)
...+++.+|..|++ |+++++|.++++.|.|+|||+|||||.|+++|.|++||+++|+|++||||.|+|||+|.||
T Consensus 151 ~~~~~~~~~~~p~~C~~--C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~ 228 (595)
T 3f9v_A 151 EDEEMPEVLEMPTICPK--CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVT 228 (595)
T ss_dssp CSSCCCSSCCCCSSCTT--TCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEE
T ss_pred ECCCCCCCCCCCCCCCC--CCCCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEE
T ss_conf 41456786558876988--8898966883167646006899998365658999978658999803532660268899999
Q ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99995320238874444420468899987897465320000000015999876444579999999999981591299999
Q 003637 361 GIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETL 440 (806)
Q Consensus 361 GIl~~~~~~~~~~~~~~~~~~~~yi~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 440 (806)
|||++.+.... .++.+++|++|++|++|+..++. .....+++++++.+.++++.+++|+.|
T Consensus 229 Gi~~~~~~~~~--~~~~~~~~~~~i~a~~i~~~~~~-----------------~~~~~~t~~~~~~i~~~~~~~~~~~~l 289 (595)
T 3f9v_A 229 GILDIKQDSPV--KRGSRAVFDIYMKVSSIEVSQKV-----------------LDEVIISEEDEKKIKDLAKDPWIRDRI 289 (595)
T ss_dssp EECCCCCSSTT--SCTTCCCCCCCCEEEEEEECCCC-----------------CCCCCCTTSTHHHHHTTSSTTTGGGTH
T ss_pred EEEEECCCCCC--CCCCCCEEEEEEEEEEECCCCCC-----------------CCCCCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 99973345555--57876338999998740333333-----------------445779999999999976092899999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCE
Q ss_conf 98215633550466887753101795334899975456642599878999499999999997899700169973100541
Q 003637 441 TRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLT 520 (806)
Q Consensus 441 ~~sl~P~I~G~e~vK~~ill~L~gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~ia~~~pr~~~tsg~~~~~~gLt 520 (806)
.++++|.|+|++++|++++++|++|..+..++ .+.|+++||||+||||||||++|+++++.+++..|+.+.+.+..+++
T Consensus 290 ~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~ 368 (595)
T 3f9v_A 290 ISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLT 368 (595)
T ss_dssp HHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSE
T ss_pred HHHHCCHHCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf 98535242383999999999985897555667-77677761478779706799999999986787644478766645660
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEEEEEECCCCCCCC
Q ss_conf 44531888873100345201257731221211138999999999988624789700343563067317997028999878
Q 003637 521 AYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRY 600 (806)
Q Consensus 521 a~~~kd~~~ge~~le~Gal~lad~GIl~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~siIaaaNp~~g~~ 600 (806)
+...++..+|.+..++|++.+|++|+|||||||+|+++.|++|+++||++++++.++|....+++++++|||+||..|+|
T Consensus 369 ~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~ 448 (595)
T 3f9v_A 369 AAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRY 448 (595)
T ss_dssp EECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCS
T ss_pred CEEEECCCCCCCCCCCCEEEECCCCCEEEEHHHHCCHHHHHHHHHHHHCCEEEEECCCCEEEECCCEEEEEECCCCCCCC
T ss_conf 10110554300014687067647894883013448986754368998688799713895789547549999738867744
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 87775000113896226920145554067996899999999998630499986578899999999999999608999999
Q 003637 601 NPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHIHPKLSD 680 (806)
Q Consensus 601 ~~~~~~~~~i~lp~~llsRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~~~p~ls~ 680 (806)
+...++.+|+.+++++++|||+++++.+.++.+ +..|++|++..|... .....++.+.+++|+.|+++.+.|.+++
T Consensus 449 ~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~---~~~~~l~~~~l~~~i~~ar~~~~p~ls~ 524 (595)
T 3f9v_A 449 ISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK---STKNIIDIDTLRKYIAYARKYVTPKITS 524 (595)
T ss_dssp CTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC---SSSSTTCCTTTHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCHHCCCCCHHHHHHCEEEEEECCCCCHH-HHHHHHHHHHHHHCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 766672320679978985470999937999878-999999999985233---3456799999999999999747898899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998834999999986233599999999999999999736997897659999999999998640
Q 003637 681 EAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQSA 753 (806)
Q Consensus 681 ea~~~L~~~y~~lR~~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~ai~l~~~sl~~~~ 753 (806)
++.+.|.++|..+|+.....+ ...+++|+|+|++++|+|+|+|++++++.|+.+|+.+|+++++.|+.+.+
T Consensus 525 ea~~~l~~~y~~lR~~~~~~~--~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~~~~ 595 (595)
T 3f9v_A 525 EAKNLITDFFVEMRKKSSETP--DSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLESVG 595 (595)
T ss_dssp CTHHHHHHHHTTSSCSCCBCS--SSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999997632377--76445058999999999999999719498889999999999999998509
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=1.00 E-value=1 Score=602.16 Aligned_cols=389 Identities=30% Similarity=0.430 Sum_probs=353.5
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCC------CCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 1642100036899851899999999972999994444335------6799988999999995320238874444420468
Q 003637 310 HNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVD------AGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKT 383 (806)
Q Consensus 310 ~~~s~f~d~Q~IkiQE~p~~~p~G~~Prsi~V~l~~dLvd------~~~pGd~V~VtGIl~~~~~~~~~~~~~~~~~~~~ 383 (806)
.+++.|.|||+|||||.|+++|.|++||+++|+|++|||| +|+|||+|.|+|||++.
T Consensus 108 ~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~----------------- 170 (506)
T 3f8t_A 108 VERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA----------------- 170 (506)
T ss_dssp CSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT-----------------
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE-----------------
T ss_conf 765554564799985174547898988159999465344751345412687789999999973-----------------
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 89998789746532000000001599987644457999999999998159129999998215633550466887753101
Q 003637 384 YIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLTRSLAPNIWELDDVKKGLLCQLF 463 (806)
Q Consensus 384 yi~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~sl~P~I~G~e~vK~~ill~L~ 463 (806)
|++|+||++ ++. .....+++++.+.|++++++ ++|+.|.++|+| |+|++++|++++++|+
T Consensus 171 ~l~a~~i~~-~~~-----------------~~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~ 230 (506)
T 3f8t_A 171 TLDALEVHK-KDP-----------------IPEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLF 230 (506)
T ss_dssp EEEEEEEEE-ECS-----------------SCCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHT
T ss_pred EEEEEEEEE-CCC-----------------CCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCC-CCCCHHHHHHHHHHHC
T ss_conf 999999997-675-----------------55577999999999999878-899999997515-0797999999999970
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHH-HHHCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 795334899975456642599878999499999999-9978997001699731005414453188887310034520125
Q 003637 464 GGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYI-HKLSPRGIYTSGKGSSAVGLTAYVTKDPETGETVLESGALVLS 542 (806)
Q Consensus 464 gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~i-a~~~pr~~~tsg~~~~~~gLta~~~kd~~~ge~~le~Gal~la 542 (806)
||..+ .|+++||||+|+||| ||++++++ ++++||.+|++|.+.+..++++. .+++ +| |.+++|++++|
T Consensus 231 GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LA 299 (506)
T 3f8t_A 231 SCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLA 299 (506)
T ss_dssp TCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHT
T ss_pred CCCCC-------CCCCEEEEEECCCCH-HHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE-EECC-CC-CCCCCCEEEEC
T ss_conf 89154-------688504999779976-99999999987389817826988886674389-9868-87-65678806875
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 77312212111389999999999886247897003435630673179970289998788777500011389622692014
Q 003637 543 DRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 622 (806)
Q Consensus 543 d~GIl~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~siIaaaNp~~g~~~~~~~~~~~i~lp~~llsRFDl 622 (806)
++|+||||||++|++..|.+||++||+|++++. |. +++++|++|||+||.+ +|+...++ +|+.||++++||||+
T Consensus 300 dgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~alLDRFDL 373 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDFLSHFDL 373 (506)
T ss_dssp TTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHHHTTCSE
T ss_pred CCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEEC--CE--ECCCCEEEEEEECCCC-CCCCCCCC-CCCCCCHHHHHHEEE
T ss_conf 798323685500999999999999867927877--88--8378729999857533-46877881-101798688502336
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHCCCC-C
Q ss_conf 5554067996899999999998630499986578899999999999999-6089999999999999999998834999-9
Q 003637 623 IYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYAR-KHIHPKLSDEAAEELTRGYVEMRRRGNF-P 700 (806)
Q Consensus 623 if~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar-~~~~p~ls~ea~~~L~~~y~~lR~~~~~-~ 700 (806)
++++.|+++.+.|.+ .....++.+.|++|+.|+| ++++|.+++++.++|.++|..+|+.... .
T Consensus 374 i~i~~d~pd~e~d~e---------------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 374 IAFLGVDPRPGEPEE---------------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp EEETTC-----------------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHC---------------CCCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 877548999567200---------------24777899999999999976078750299999999999999732744354
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 9998623359999999999999999973699789765999999999999864003778872165864
Q 003637 701 GSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLLEVAMQQSATDHSTGTIDMDLIT 767 (806)
Q Consensus 701 ~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~ai~l~~~sl~~~~~~~~~g~~d~d~~~ 767 (806)
++....+++|+|++++++|+|+|+|++++++.|+.+||.+|+++++.|+.+.++||++|.+|+.++.
T Consensus 439 ~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~id~~~~~ 505 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSLK 505 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC-------------
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 4433202426899999999999999973969779999999999999999983578899868687317
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=1.00 E-value=1 Score=422.80 Aligned_cols=270 Identities=26% Similarity=0.443 Sum_probs=241.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECHHHHCCCHHHHHHHHHCHHHH
Q ss_conf 7889999999999997531000000588422100114999999998--70794999933036112879999998697999
Q 003637 124 NISVQDVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVL--EIEGEWIDVDANDVFDYDSDLYNKMVRYPLEV 201 (806)
Q Consensus 124 ~i~~~~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~--~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~ 201 (806)
...-.++++.|++||++| +|+++|++|+ ..+..+|.||+.||.+|+++||.+|+++|.++
T Consensus 8 ~~~~~~~~~~f~~Fl~~~------------------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~ 69 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSLQ------------------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDV 69 (279)
T ss_dssp -CCHHHHHHHHHHHTTSH------------------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHH
T ss_pred CCCHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHCCCCEEEEEEHHHHHHHCHHHHHHHHHCHHHH
T ss_conf 078699999999986404------------------68999999986278974999996998646899999999898999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 99999999999996276567728999941688557778893587936999989997256630578789982345766786
Q 003637 202 LAIFDIVLMDIVSLINPLFEKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRCLVCGYYSDP 281 (806)
Q Consensus 202 l~~~~~ai~e~~~~~~~~~~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C~~C~~~~~~ 281 (806)
+++|+.|++++.. . ..-. .++||++|+|...++|+|++.+|||||+|+|+|+|+|.|+|+++.++|.|..|++..+
T Consensus 70 l~~~~~a~~~~~~-~-~~~~-~~~vr~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~- 145 (279)
T 1ltl_A 70 IRAAQQAIRNIDR-L-RKNV-DLNIRFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHA- 145 (279)
T ss_dssp HHHHHHHHTTTCT-T-CCCC-CCEEEEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEE-
T ss_pred HHHHHHHHHHHCC-C-CCCE-EEEEEEECCCCCCCCCCCCHHHCCCEEEEEEEEEEECCEEEEEEEEEEECCCCCCEEE-
T ss_conf 9999999998561-1-4770-4999997897777756688154898799999999805627899999999079998999-
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEE
Q ss_conf 47517865698666862238999426731642100036899851899999999972999994444335679998899999
Q 003637 282 IVVDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVTG 361 (806)
Q Consensus 282 ~~~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~p~~~p~G~~Prsi~V~l~~dLvd~~~pGd~V~VtG 361 (806)
+.+..+++.+|..|++ |++++ |.++++.|.|+|||+|||||.|+++|.|++||+++|+|++||||.|+|||+|+|||
T Consensus 146 v~~~~~~~~~P~~Cp~--C~~~~-f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtG 222 (279)
T 1ltl_A 146 VTQSTNMITEPSLCSE--CGGRS-FRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTG 222 (279)
T ss_dssp EECSSSSCCCCSCCTT--TCCCC-EEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEE
T ss_pred EEECCCCCCCCCCCCC--CCCCC-CEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEE
T ss_conf 9836884249975989--99987-48833625788307999964855589999980899999154017547999999999
Q ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99953202388744444204688999878974653200000000159998764445799999999999815912999999
Q 003637 362 IYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEIDNSHPRIEDEIQFDESKIQQLKELSRQPNIYETLT 441 (806)
Q Consensus 362 Il~~~~~~~~~~~~~~~~~~~~yi~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 441 (806)
||++.+ ++..++|++||+|+||++.++. .....|++++.++|++++++|++|++|+
T Consensus 223 I~~~~~-------~~~~~~~~~~l~a~~I~~~~~~-----------------~~~~~~t~ed~~~i~~ls~~~~iy~~L~ 278 (279)
T 1ltl_A 223 TLRTVR-------DERTKRFKNFIYGNYTEFLEQE-----------------FEELQISEEDEEKIKELAGDPNIYEKII 278 (279)
T ss_dssp EEEEEE-------ETTTTEEEEEEEEEECCBC------------------------------------------------
T ss_pred EEEEEE-------CCCCCEEEEEEEEEEEEEECCC-----------------CCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 999866-------7997258999999999980674-----------------4457799999999999851998999951
Q ss_pred H
Q ss_conf 8
Q 003637 442 R 442 (806)
Q Consensus 442 ~ 442 (806)
+
T Consensus 279 ~ 279 (279)
T 1ltl_A 279 R 279 (279)
T ss_dssp -
T ss_pred C
T ss_conf 9
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=409.19 Aligned_cols=251 Identities=24% Similarity=0.489 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99999999997531000000588422100114999999998707949999330361128799999986979999999999
Q 003637 129 DVKSAIQMFLKHFREKEELLSGSESEIYKEGKYMRAINRVLEIEGEWIDVDANDVFDYDSDLYNKMVRYPLEVLAIFDIV 208 (806)
Q Consensus 129 ~~~~~f~~FL~~F~~~~~~~~~~~~~~~~~~~Y~~~i~~~~~~~~~~l~Id~~dL~~fd~~La~~l~~~P~~~l~~~~~a 208 (806)
++.+.|++||++|.+. .+.++|+++|++|+..+..+|.||+.||.+|+++||.+|+++|.+++++|+.|
T Consensus 9 ~~~~~f~~Fl~~f~~~-----------~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a 77 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGN-----------NNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGA 77 (268)
T ss_dssp CHHHHHHHHHHHCCCS-----------SSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-----------CCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999862214-----------68557999999999749947999979987456999999998989999999999
Q ss_pred HHHHHHHHCCCC---CCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE--CCCCCCCCCEE
Q ss_conf 999999627656---7728999941688557778893587936999989997256630578789982--34576678647
Q 003637 209 LMDIVSLINPLF---EKHVQVRIYNLKSSTAMRNLNPSDIEKMVSLKGMVIRCSSIIPEIREAIFRC--LVCGYYSDPIV 283 (806)
Q Consensus 209 i~e~~~~~~~~~---~~~i~vr~~nl~~~~~iR~L~~~~igkLV~i~GiV~r~S~v~p~l~~a~f~C--~~C~~~~~~~~ 283 (806)
+++++....+.+ .+.++||++|+|...++|+|++.+|||||+|+|+|+|+|.|+|+++.++|.| ..|++... +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~vr~~~~~~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~-~~ 156 (268)
T 2vl6_A 78 LYDHILQLDPTYQRDIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFE-WP 156 (268)
T ss_dssp HHHHHHTTCGGGTTTCSCCCEEEECCSCEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEE-SS
T ss_pred HHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCEEE-EE
T ss_conf 99999874806552476189999888777763548966789869997899982785417689999978888998886-56
Q ss_pred ---ECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf ---51786569866686223899942673164210003689985189999999997299999444433567999889999
Q 003637 284 ---VDRGRINEPSTCLKQECLAKNSMTLVHNRCRFADKQIVRLQETPDDIPDGGTPHTVSLLMHDKLVDAGKPGDRVEVT 360 (806)
Q Consensus 284 ---~~~~~~~~P~~C~~~~C~~~~~~~l~~~~s~f~d~Q~IkiQE~p~~~p~G~~Prsi~V~l~~dLvd~~~pGd~V~Vt 360 (806)
+..+.+.+|..|+. |+++++|.++++.|+|+|||+|||||.|+++|.|++||+++|+|++||||.|+|||+|+||
T Consensus 157 ~~~~~~~~~~~P~~Cp~--C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vt 234 (268)
T 2vl6_A 157 EDEEMPEVLEMPTICPK--CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVT 234 (268)
T ss_dssp TTSCCCTTCCCCSBCTT--TCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEE
T ss_pred ECCCCCCCCCCCCCCCC--CCCCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 32457886669753889--9899987982575578711799998387778999998289999914714755699999999
Q ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 99995320238874444420468899987897465
Q 003637 361 GIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADK 395 (806)
Q Consensus 361 GIl~~~~~~~~~~~~~~~~~~~~yi~a~~i~~~~~ 395 (806)
|||++.+.+. ..++.+++|++||+|+||++.++
T Consensus 235 GI~~~~~~~~--~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 235 GILDIKQDSP--VKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp EEEEEECSST--TCCSSCCEEEEEEEEEEEEEC--
T ss_pred EEEEEEECCC--CCCCCCEEEEEEEEEEEEEEECC
T ss_conf 9999712445--55787317999999999999325
No 5
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=1.00 E-value=1 Score=204.58 Aligned_cols=267 Identities=18% Similarity=0.163 Sum_probs=186.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCE---ECCC
Q ss_conf 2999999821563355046688775310179533489997545664259987899949999999999789970---0169
Q 003637 435 NIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI---YTSG 511 (806)
Q Consensus 435 ~~~~~l~~sl~P~I~G~e~vK~~ill~L~gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~ia~~~pr~~---~tsg 511 (806)
+.+..+.+++++.|+|++++++.+++.+.++. ||||+|+||||||++++++++.+++.. +...
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~--------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC--------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999887225788899999999985078--------------3686468348799999999998864268999998
Q ss_pred CCCCCCCCEEEEE--CCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEE
Q ss_conf 9731005414453--188887310-0345201257731221211138999999999988624789700343563067317
Q 003637 512 KGSSAVGLTAYVT--KDPETGETV-LESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTS 588 (806)
Q Consensus 512 ~~~~~~gLta~~~--kd~~~ge~~-le~Gal~lad~GIl~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~s 588 (806)
...+...+..... .....|.+. ...|. ++..+|+|||||+++++..++.|+++|+++.+++ .|....++.++
T Consensus 77 ~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~- 151 (500)
T 3nbx_X 77 RFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL- 151 (500)
T ss_dssp TTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-
T ss_pred HCCCHHHHCCCCCHHHHHHCHHHHHHHCCC--CCCCEEEEHHHHHHHCHHHHHHHHHHHHHHHCCC--CCCCCCCCHHH-
T ss_conf 159888834730088775210587653257--8752233078676435799999999987876138--88767764102-
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9970289998788777500011389622692014555406799689-999999999863049998657889999999999
Q 003637 589 VLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQT-DRRLAKHIVSLHFENPENSEQGVLDLATLTAYV 667 (806)
Q Consensus 589 iIaaaNp~~g~~~~~~~~~~~i~lp~~llsRFDlif~l~d~~~~~~-d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi 667 (806)
+++|+|+... ...+.+++++|| .+.+.+++|+... ...|........ .........++.+.+..+.
T Consensus 152 iI~ATN~lpe----------~~~~~~aLldRF-~~~i~v~~p~~~ee~~~IL~~~~~~~--~~~~~~~~~~~~e~l~~~~ 218 (500)
T 3nbx_X 152 LVAASNELPE----------ADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQQDEN--DNPVPDALQVTDEEYERWQ 218 (500)
T ss_dssp EEEEESSCCC----------TTCTTHHHHTTC-CEEEECCSCCCHHHHHHHHTCCCCTT--SCCSCTTTSBCHHHHHHHH
T ss_pred HHHCCCCCCC----------CCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEECHHHHHHHH
T ss_conf 1111566887----------655389999999-99999987654430899874366667--8989733442689999988
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9999608999999999999999999883499999998623359999999999999999973699789765999999
Q 003637 668 SYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFR 743 (806)
Q Consensus 668 ~~ar~~~~p~ls~ea~~~L~~~y~~lR~~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~ai~ 743 (806)
..++. ..+++++.+++.+.+..+|..... .++|.|.+++++++++|+|.+++++.|+.+|+..+..
T Consensus 219 ~~~~~---v~v~d~v~e~i~~l~~~lr~~r~~-------~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~ 284 (500)
T 3nbx_X 219 KEIGE---ITLPDHVFELIFMLRQQLDKLPDA-------PYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKD 284 (500)
T ss_dssp HHHTT---CBCCHHHHHHHHHHHHHHHHCSSS-------CCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGG
T ss_pred HCCCC---CCCCHHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 52784---227528999999999986248899-------8543157999999999877651776444057888776
No 6
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=1.00 E-value=1 Score=198.34 Aligned_cols=278 Identities=18% Similarity=0.217 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEC-C-C
Q ss_conf 1299999982156335504668877531017953348999754566425998789994999999999978997001-6-9
Q 003637 434 PNIYETLTRSLAPNIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYT-S-G 511 (806)
Q Consensus 434 ~~~~~~l~~sl~P~I~G~e~vK~~ill~L~gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~ia~~~pr~~~t-s-g 511 (806)
.+.+..+...+.+.|+|++.+++.++..+.++. |+||+|+||||||++++++++.++...+. . .
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--------------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--------------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--------------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCC--------------EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999861410185999999999997698--------------599988998859999999999819982799658
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEEEEE
Q ss_conf 97310054144531888873100345201257731221211138999999999988624789700343563067317997
Q 003637 512 KGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLA 591 (806)
Q Consensus 512 ~~~~~~gLta~~~kd~~~ge~~le~Gal~lad~GIl~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~siIa 591 (806)
.......+......+...+.+.+..|.+ .++++||||++++++..++.|+++|+++.+++ .|.....+.++.+++
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~via 155 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLA 155 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEE
T ss_pred CCCCHHHCCCCEEECCCCCCEEECCCCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCEEEECCCCEEEEE
T ss_conf 8788554078534307887168435850---13679997504299999999999996293635--997897799879998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02899987887775000113896226920145554067996899999999998630499986578899999999999999
Q 003637 592 CANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYAR 671 (806)
Q Consensus 592 aaNp~~g~~~~~~~~~~~i~lp~~llsRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar 671 (806)
++||.... ....+++++++||++. +.++.|+.+....|.++...... .......++.+.+.......+
T Consensus 156 t~np~~~~--------~~~~l~~~l~~Rf~~~-i~i~~p~~~~~~~il~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~ 223 (331)
T 2r44_A 156 TQNPVEQE--------GTYPLPEAQVDRFMMK-IHLTYLDKESELEVMRRVSNMNF---NYQVQKIVSKNDVLEIRNEIN 223 (331)
T ss_dssp EECTTCCS--------CCCCCCHHHHTTSSEE-EECCCCCHHHHHHHHHHHHCTTC---CCCCCCCSCHHHHHHHHHHHH
T ss_pred ECCCCCCC--------CCCCCCHHHHHHEEEE-EECCCCCHHHHHHHHHHCCCCCC---CHHCCCCCCHHHHHHHHHHHC
T ss_conf 06987656--------7646898998154389-98179999999999984214486---011033489999999999854
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 608999999999999999999883499999---99862335999999999999999997369978976599999999
Q 003637 672 KHIHPKLSDEAAEELTRGYVEMRRRGNFPG---SSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRLL 745 (806)
Q Consensus 672 ~~~~p~ls~ea~~~L~~~y~~lR~~~~~~~---~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~ai~l~ 745 (806)
...+++++.+++.+.+..+|..+.... ......++|+|.+.++++++.++|.+++++.|+.+|+.+++..+
T Consensus 224 ---~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 ---KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp ---TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf ---67789999999999999974250014421001201475736999999999999997699977999999999999
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=1.00 E-value=1 Score=196.59 Aligned_cols=264 Identities=20% Similarity=0.246 Sum_probs=186.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCC--------
Q ss_conf 335504668877531017953348999754566425998789994999999999978997001699731005--------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVG-------- 518 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~ia~~~pr~~~tsg~~~~~~g-------- 518 (806)
.|+|++.++.++...++... ..|+||+|+||||||++++++++.+++..+..+..+....
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWA 92 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTC
T ss_pred HCCCHHHHHHHHHHHHHCCC------------CCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 00380999999999862888------------864999899986399999999986752112344544455444321102
Q ss_pred -------------------------CEEEE--ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCE
Q ss_conf -------------------------41445--318888731003452012577312212111389999999999886247
Q 003637 519 -------------------------LTAYV--TKDPETGETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQT 571 (806)
Q Consensus 519 -------------------------Lta~~--~kd~~~ge~~le~Gal~lad~GIl~IDEidkl~~~~q~~L~e~mE~q~ 571 (806)
+.... .+....+.+....|.+..+++|++||||+++++...+..|+++|+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHEEECHHHHHHCCCCEEECCCEEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCC
T ss_conf 33202445577861006787664561211004444227853114752130689889995723189999999999996295
Q ss_pred EEEEECCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89700343563067317997028999878877750001138962269201455540679968999999999986304999
Q 003637 572 VSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPE 651 (806)
Q Consensus 572 isi~kag~~~~l~~r~siIaaaNp~~g~~~~~~~~~~~i~lp~~llsRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~ 651 (806)
..+...|.....+.++.+++++||..+ .+++++++||++.+.+....+.+....|..+.+........
T Consensus 173 ~~~~~~g~~~~~~~~~~li~~~n~~~~------------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~ 240 (350)
T 1g8p_A 173 NVVERDGLSIRHPARFVLVGSGNPEEG------------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKA 240 (350)
T ss_dssp EEECCTTCCEEEECCEEEEEEECSCSC------------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHH
T ss_pred EEEEECCEEEEECCCEEEEEEECCCCC------------CCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 489745457761786289997488878------------88988994554689747977678999999998731458033
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 86578899999999999999608-99999999999999999988349999999862335999999999999999997369
Q 003637 652 NSEQGVLDLATLTAYVSYARKHI-HPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLS 730 (806)
Q Consensus 652 ~~~~~~i~~~~lk~yi~~ar~~~-~p~ls~ea~~~L~~~y~~lR~~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~ 730 (806)
...........+++++.+++... ...+++++.++|.+++...+. .++|++.++++.+.+.|.++.+
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~-------------~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 241 FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS-------------DGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS-------------CSHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 202344246999999999998677899899999999999998579-------------9851789999999999987099
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 97897659999999999
Q 003637 731 ELVEKHDVEEAFRLLEV 747 (806)
Q Consensus 731 ~~V~~~Dv~~ai~l~~~ 747 (806)
+.|+.+|+.+|+.++..
T Consensus 308 ~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALS 324 (350)
T ss_dssp SBCCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 86789999999999875
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=1.00 E-value=1 Score=179.41 Aligned_cols=241 Identities=22% Similarity=0.278 Sum_probs=167.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCE----ECCCCCCC-------
Q ss_conf 3355046688775310179533489997545664259987899949999999999789970----01699731-------
Q 003637 447 NIWELDDVKKGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGI----YTSGKGSS------- 515 (806)
Q Consensus 447 ~I~G~e~vK~~ill~L~gg~~~~~~~g~~~r~~i~VLL~GdPGtGKS~llr~ia~~~pr~~----~tsg~~~~------- 515 (806)
.++|++.++..+...+..+. +++|+|+||||||++++.++..+++.. +..+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g~--------------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQKR--------------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTTC--------------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEE
T ss_pred EEECCHHHHHHCCCCCCCCC--------------EEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEE
T ss_conf 57882246765130066998--------------8999948987899999999624886658769995786645587479
Q ss_pred -----------------------------------------------------------CCCCEEEEECCC------CCC
Q ss_conf -----------------------------------------------------------005414453188------887
Q 003637 516 -----------------------------------------------------------AVGLTAYVTKDP------ETG 530 (806)
Q Consensus 516 -----------------------------------------------------------~~gLta~~~kd~------~~g 530 (806)
...+...+..+. .++
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred EEECCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEECCCCCHHHCCCEEEECHHHCCCCCCC
T ss_conf 97465478999999875123312322102232432232246426667899989748998776671288423233774446
Q ss_pred -CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCEEEEEECCE----------EEEECCCEEEEEECCCCCCC
Q ss_conf -3100345201257731221211138999999999988624789700343----------56306731799702899987
Q 003637 531 -ETVLESGALVLSDRGICCIDEFDKMSESARSMLHEVMEQQTVSIAKAGI----------IASLNARTSVLACANPSGSR 599 (806)
Q Consensus 531 -e~~le~Gal~lad~GIl~IDEidkl~~~~q~~L~e~mE~q~isi~kag~----------~~~l~~r~siIaaaNp~~g~ 599 (806)
...+.+|.+..|++|++||||++.|++..|..|+++|+++.+.+. |. ....+.++.+|+|+|+..
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~-- 263 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDT-- 263 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHH--
T ss_pred CCCCCCCCEEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEC--CCCCCCCCCCCCCCCCCEEEEEEEECCHHH--
T ss_conf 3335467416525798899801163999999999999973937741--653335656677776012589998258878--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH-----CC
Q ss_conf 8877750001138962269201455540679968999999999986304999865788999999999999996-----08
Q 003637 600 YNPRLSVIENIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARK-----HI 674 (806)
Q Consensus 600 ~~~~~~~~~~i~lp~~llsRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar~-----~~ 674 (806)
...++++|++||+++-+..+..+ ......+.+..|+.+..+ ..
T Consensus 264 ---------~~~l~~~l~~R~~v~~i~i~l~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (604)
T 3k1j_A 264 ---------VDKMHPALRSRIRGYGYEVYMRT-----------------------TMPDTIENRRKLVQFVAQEVKRDGK 311 (604)
T ss_dssp ---------HHHSCHHHHHHHHHHSEEEECCS-----------------------EEECCHHHHHHHHHHHHHHHHHHCS
T ss_pred ---------HHHCCHHHHHHHHCCCEEEECCC-----------------------CCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf ---------76469889987514615863543-----------------------4458899999999999999765367
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999999999999999998834999999986233599999999999999999736997897659999999
Q 003637 675 HPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEAFRL 744 (806)
Q Consensus 675 ~p~ls~ea~~~L~~~y~~lR~~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~ai~l 744 (806)
.+.+++++.+.|.++|..+ +|. ...++.++|++.+++|.|.+.|+.+.++.|+.+|+.+|+..
T Consensus 312 ~~~ls~eAl~~Li~~~~r~------~g~-r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKR------AGR-KGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHT------TCS-TTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------HCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 6667999999999997653------244-11256589999999999999987637653248999999986
No 9
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=1.00 E-value=1 Score=172.51 Aligned_cols=202 Identities=24% Similarity=0.386 Sum_probs=159.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEE-----------ECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6642599878999499999999997899700169973100541445-----------31888873100345201257731
Q 003637 478 GDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYV-----------TKDPETGETVLESGALVLSDRGI 546 (806)
Q Consensus 478 ~~i~VLL~GdPGtGKS~llr~ia~~~pr~~~tsg~~~~~~gLta~~-----------~kd~~~ge~~le~Gal~lad~GI 546 (806)
.+.+||+.|++||||+.+++++|..+++. ..++..++|.+.. .++.++|......|.+..|++|+
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~----~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRS----KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGT 234 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTT----TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCC----CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCE
T ss_conf 99985886687868999999999845878----89869886377997899998668878887886425687500689848
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEEEEEECCCC------CCCCCC----CCCCCCCCCCCCCC
Q ss_conf 22121113899999999998862478970034356306731799702899------987887----77500011389622
Q 003637 547 CCIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYNP----RLSVIENIHLPPTL 616 (806)
Q Consensus 547 l~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~siIaaaNp~------~g~~~~----~~~~~~~i~lp~~l 616 (806)
+||||++.|+...|..|+++|+++.+. +.|.....+.++++|+|+|.. .|+|+. ++++. .+.+||..
T Consensus 235 lfldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~-~i~lPpLr 311 (387)
T 1ny5_A 235 LFLDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI-EIEIPPLR 311 (387)
T ss_dssp EEEESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-EEECCCGG
T ss_pred EEECCHHHCCHHHHHHHHHHHHCCCEE--ECCCCCEEECCEEEEEECCCCHHHHHHCCCCCHHHHHHHCCC-EECCCCCH
T ss_conf 998072649999999999999609078--579985541367999957989999987399669999761488-23277610
Q ss_pred CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 6920145554067996899999999998630499986578899999999999999608--99999999999999999988
Q 003637 617 LSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKHI--HPKLSDEAAEELTRGYVEMR 694 (806)
Q Consensus 617 lsRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~~--~p~ls~ea~~~L~~~y~~lR 694 (806)
.++-|+. .|++|++..+ +++.- .+.+++++.+.|..+
T Consensus 312 eR~~Di~-------------~l~~~~l~~~-----------------------~~~~~~~~~~~~~~a~~~l~~~----- 350 (387)
T 1ny5_A 312 ERKEDII-------------PLANHFLKKF-----------------------SRKYAKEVEGFTKSAQELLLSY----- 350 (387)
T ss_dssp GCHHHHH-------------HHHHHHHHHH-----------------------HHHTTCCCCEECHHHHHHHHHS-----
T ss_pred HCCCCHH-------------HHHHHHHHHH-----------------------HHHCCCCCCCCCHHHHHHHHHC-----
T ss_conf 0620399-------------9999999999-----------------------9982999898799999999728-----
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 34999999986233599999999999999999736997897659999
Q 003637 695 RRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 695 ~~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~a 741 (806)
.|||| +|+|+++++.+...+. ...|+.+|+...
T Consensus 351 ---~wpGN--------vreL~~~i~~~~~~~~---~~~i~~~~l~~~ 383 (387)
T 1ny5_A 351 ---PWYGN--------VRELKNVIERAVLFSE---GKFIDRGELSCL 383 (387)
T ss_dssp ---CCTTH--------HHHHHHHHHHHHHHCC---SSEECHHHHHHH
T ss_pred ---CCCCH--------HHHHHHHHHHHHHHCC---CCCCCHHHCCHH
T ss_conf ---99819--------9999999999998489---983767877185
No 10
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=169.94 Aligned_cols=201 Identities=23% Similarity=0.386 Sum_probs=143.5
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEE-----------CCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 6425998789994999999999978997001699731005414453-----------18888731003452012577312
Q 003637 479 DINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGKGSSAVGLTAYVT-----------KDPETGETVLESGALVLSDRGIC 547 (806)
Q Consensus 479 ~i~VLL~GdPGtGKS~llr~ia~~~pr~~~tsg~~~~~~gLta~~~-----------kd~~~ge~~le~Gal~lad~GIl 547 (806)
+.+|||+|+||||||.+++++|..+++. +.++..++|.+... +..++|......|.+..+++|++
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~----~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L 100 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARS----DRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 100 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCS----SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEE
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCC----CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCHHHHCCCCEE
T ss_conf 9809998979801999999999847421----898699867989867889986386556657512210677886689879
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCEEEEEECCEEEEECCCEEEEEECCCC------CCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 2121113899999999998862478970034356306731799702899------987887----775000113896226
Q 003637 548 CIDEFDKMSESARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPS------GSRYNP----RLSVIENIHLPPTLL 617 (806)
Q Consensus 548 ~IDEidkl~~~~q~~L~e~mE~q~isi~kag~~~~l~~r~siIaaaNp~------~g~~~~----~~~~~~~i~lp~~ll 617 (806)
||||++.|+...|..|+.+|+++.+. +.|.....+.++++|+|+|+. .++|+. ++++. .+.+||...
T Consensus 101 ~LDEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~-~i~lPpL~e 177 (304)
T 1ojl_A 101 FLDEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVV-AIEMPSLRQ 177 (304)
T ss_dssp EEESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSE-EEECCCSGG
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEE--ECCCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHCCEE-EEECCCHHH
T ss_conf 99564649999999999998528862--058763246775999844810788887087579998506756-885468777
Q ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 92014555406799689999999999863049998657889999999999999960--8999999999999999999883
Q 003637 618 SRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENSEQGVLDLATLTAYVSYARKH--IHPKLSDEAAEELTRGYVEMRR 695 (806)
Q Consensus 618 sRFDlif~l~d~~~~~~d~~la~~il~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~--~~p~ls~ea~~~L~~~y~~lR~ 695 (806)
++-|+ ..++.|++..+ +++. ..+.+++++.+.|..+
T Consensus 178 R~edi-------------~~l~~~~l~~~-----------------------~~~~~~~~~~~s~~a~~~L~~~------ 215 (304)
T 1ojl_A 178 RREDI-------------PLLADHFLRRF-----------------------AERNRKVVKGFTPQAMDLLIHY------ 215 (304)
T ss_dssp GGGGH-------------HHHHHHHHHHH-----------------------HHHTTCCCCCBCHHHHHHHHHC------
T ss_pred HHHHH-------------HHHHHHHHHHH-----------------------HHHHCCCCCCCCHHHHHHHHCC------
T ss_conf 27667-------------88899999999-----------------------9985367568879999999839------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 4999999986233599999999999999999736997897659999
Q 003637 696 RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVEEA 741 (806)
Q Consensus 696 ~~~~~~~~~~~~~it~R~Leslirla~a~A~l~l~~~V~~~Dv~~a 741 (806)
.|||| +|+|+++++.+...+. ...|+.+|+...
T Consensus 216 --~wpGn--------vReL~~~l~~~~~~~~---~~~i~~~~l~~~ 248 (304)
T 1ojl_A 216 --DWPGN--------IRELENAIERAVVLLT---GEYISERELPLA 248 (304)
T ss_dssp --CCSSH--------HHHHHHHHHHHHHHCC---SSSBCGGGSCGG
T ss_pred --CCCCC--------HHHHHHHHHHHHHHCC---CCCCCHHHHHHH
T ss_conf --99988--------9999999999998589---980338762565
Done!