BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003638
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5
PE=2 SV=1
Length = 788
Score = 40.8 bits (94), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 85/434 (19%), Positives = 166/434 (38%), Gaps = 64/434 (14%)
Query: 342 PKDIVNDIKQEYG-IQLNYFQAWRGKEIAKEQLQGSYKEAYNQLPLFCERIMETNPGSLA 400
P+ I++ + +EYG I F + + Q S + L + ++ NP
Sbjct: 210 PRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIEGEIQLLLDYLRQMNADNPNFFY 269
Query: 401 TFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSVPLKSKYQGTLLAATAAD--GDDG 458
+ ED S +F + ++ F + F D+ ++Y+ T + G
Sbjct: 270 SVQGSEDQSVGNVFWADPKAIMDFTHFGDTVTF-DTTYRSNRYRLPFAPFTGVNHHGQPI 328
Query: 459 VFPVAFAVVDAETNDDWHWFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSFHGY 518
+F AF + + E + W L A +A P++ D +R +I +F G+ H +
Sbjct: 329 LFGCAFIINETEASFVW---LFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHRF 385
Query: 519 CLRYLTEQLVKDLKGQFSHEVKRLMIE-DFYAAA-YAPTPEEFERSIES-IKSISLEAYN 575
C ++ ++ + L F +K E DF+ + E+FER S + L +
Sbjct: 386 CKWHILKKCQEKLSHVF---LKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHE 442
Query: 576 WI--LQSEYLNWA---------------------NAFFQGARYNHMTSNFGELF--YSWA 610
W+ + S+ W N++F G Y + ++N + F Y A
Sbjct: 443 WLQAIYSDRRQWVPVYLRDTFFADMSLTHRSDSINSYFDG--YINASTNLSQFFKLYEKA 500
Query: 611 SDA-------------NELPITQMVDVIRGKIMELIYTRR---TDSNQWLTRLTPSMEEK 654
++ N P+ + + + EL YTR+ + + LT +
Sbjct: 501 LESRLEKEVKADYDTMNSPPVLKTPSPMEKQASEL-YTRKLFMRFQEELVGTLTFMASKA 559
Query: 655 LEKESLKVRSLQVLLSAGRTFEVRGDSIEVVDIDHWDCSCKGWQLTGLPCCHAIAVL--- 711
+ L + A + V+ + +E+ +CSC+ ++ +G+ C H +AV
Sbjct: 560 DDDGDLVTYQVAKYGEAHKAHFVKFNVLEM----RANCSCQMFEFSGIICRHILAVFRVT 615
Query: 712 SCIGCSPYDYCSRY 725
+ + PY R+
Sbjct: 616 NLLTLPPYYILKRW 629
>sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4
PE=2 SV=2
Length = 732
Score = 40.0 bits (92), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 33/256 (12%)
Query: 492 PITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSHEVKRLMIEDFYAAA 551
P + D+ ++ +IA + + H YCL ++ +QL ++L +S M + F
Sbjct: 272 PKVMLTDQNNAIKAAIAAVLPETRHCYCLWHVLDQLPRNL-DYWSMWQDTFMKKLFKCIY 330
Query: 552 YAPTPEEFERS-IESIKSISLEAYNWI--LQSEYLNWANAFFQGARYNHMTSNFGELFYS 608
+ + EEF+R ++ I L W+ L E WA F +G + ++ +
Sbjct: 331 RSWSEEEFDRRWLKLIDKFHLRDVPWMRSLYEERKFWAPTFMRGITFAGLSMRCRSESVN 390
Query: 609 WASDANELPITQMVDVIRGK--IMELIYTR--RTDSNQWLTRLTPSMEEKLEKESLKVRS 664
D P T + + + G ++E Y + D + W EK+ L V S
Sbjct: 391 SLFDRYVHPETSLKEFLEGYGLMLEDRYEEEAKADFDAWHEAPELKSPSPFEKQMLLVYS 450
Query: 665 --------LQVLLSA----------GRTFEVRGDSIEVVDIDHWD-------CSCKGWQL 699
L+VL +A G T+ V+ E + WD CSC+ ++
Sbjct: 451 HEIFRRFQLEVLGAAACHLTKESEEGTTYSVKDFDDEQKYLVDWDEFKSDIYCSCRSFEY 510
Query: 700 TGLPCCHAIAVLSCIG 715
G C HAI VL G
Sbjct: 511 KGYLCRHAIVVLQMSG 526
>sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3
PE=2 SV=2
Length = 851
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 23/225 (10%)
Query: 378 KEAYNQLPLFCERIMETNPGSLATFTTKEDSSFHRLFVSFHASLYGFIQGCRPLLFLDSV 437
++A+N L F +R+ NPG ED+ +F + S + F D+V
Sbjct: 195 RDAHNLLEYF-KRMQAENPGFFYAVQLDEDNQMSNVFWADSRSRVAYTH------FGDTV 247
Query: 438 PLKSKYQGTLLAA-----TAADGDDGVFPVAFAVVDAETNDDWHWFLLQLKSALSTATCP 492
L ++Y+ T + A++ E++ + W +A+ P
Sbjct: 248 TLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTSFIWLFKTFLTAMRDQP-P 306
Query: 493 ITFVADKQKGLRESIAEIFKGSFHGYCLRYLTEQLVKDLKGQFSH---EVKRLMIEDFYA 549
++ V D+ + ++ + ++F G+ H C+ ++++ + + +H +E +
Sbjct: 307 VSLVTDQDRAIQIAAGQVFPGARH--CINKW--DVLREGQEKLAHVCLAYPSFQVELYNC 362
Query: 550 AAYAPTPEEFERSIES-IKSISLEAYNWI--LQSEYLNWANAFFQ 591
+ T EEFE S S I L + W+ L + W +F+
Sbjct: 363 INFTETIEEFESSWSSVIDKYDLGRHEWLNSLYNARAQWVPVYFR 407
>sp|Q9HXH0|SYV_PSEAE Valine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=valS PE=3 SV=1
Length = 950
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 477 WFLLQLKSALSTATCPITFVADKQKGLRESIAEIFKGSF---HGYCLRYLTEQLVKDLKG 533
W+L +K L PI ++Q+G R ++ + + + H + + ++TE++ + +KG
Sbjct: 712 WYLELVKPVLWDENAPI----ERQRGTRRTLIRVLETALRLAHPF-MPFITEEIWQRIKG 766
Query: 534 QFSHEVKRLMIEDFYAAAYAPTPEEFERSIESIKSISL 571
Q E LM++ + A E IE +K++ L
Sbjct: 767 QAGKEGPTLMLQPWPVADEGRIDAAAEGDIEWVKALML 804
>sp|A8MFH2|DEOB_ALKOO Phosphopentomutase OS=Alkaliphilus oremlandii (strain OhILAs)
GN=deoB PE=3 SV=1
Length = 390
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 292 RLSTTQLICIKKMNPTHTCEGAV-----VTNGNQATRS-W-VASI-IKEKLKVFPNYKPK 343
+L + I + P + GA V+NG T W +A I +KE K FPN P+
Sbjct: 49 KLGLGNIDGIVGIEPVESPLGAFGKSLEVSNGKDTTTGHWEIAGIHLKEPFKTFPNGFPE 108
Query: 344 DIVNDIKQEYGIQLNYFQAWRGKEIAKE 371
D++N+I+++ G + +A G I E
Sbjct: 109 DVINEIERKIGRKTLGNKAASGTVILDE 136
>sp|A4SMP7|HIS8_AERS4 Histidinol-phosphate aminotransferase OS=Aeromonas salmonicida
(strain A449) GN=hisC PE=3 SV=1
Length = 355
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 311 EGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAK 370
+G V N N+A +++ +I +L +P +P ++VN G+ + RG + A
Sbjct: 26 KGHVWLNANEAPQAYPFTIEGNRLNRYPECQPAEVVNGYAAYAGVNPDQVLVSRGADEAI 85
Query: 371 EQLQGSYKEAYNQLPLFC 388
E L ++ EA L C
Sbjct: 86 ELLIRTFCEAGEDQILIC 103
>sp|Q9SXS3|C93C2_GLYEC 2-hydroxyisoflavanone synthase OS=Glycyrrhiza echinata GN=CYP93C2
PE=1 SV=1
Length = 523
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 19/188 (10%)
Query: 70 GDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIK- 128
G+ + +D + F + +T ++ +++ +F G T ++ D L +I
Sbjct: 268 GEQSVVFLDTLLDFAEDETMEIKITKEQIKGLVVDFFSAGTDST--AVATDWALSELINN 325
Query: 129 ---FNGDSATTDVFVILEEIV-EPDVSNMPASRSSRTTLSESVPPVDVVDDM------VD 178
F D V + +V E DV N+P RS PP+ VV VD
Sbjct: 326 PRVFQKAREEIDAVVGKDRLVDEADVQNLPYIRSIVKETFRMHPPLPVVKRKCVQECEVD 385
Query: 179 GNIIPLGASLDDVVDTNHIDMNIDDTQIDLPDEISP--ILPLTGSNDEKHVKTAQQWQNT 236
G +IP GA ++ N + D D P E P L G D+ Q +Q
Sbjct: 386 GYVIPEGA----LILFNVWAVGRDPKYWDRPTEFRPERFLENVGEGDQAVDLRGQHFQLL 441
Query: 237 ITGVGQRF 244
G G+R
Sbjct: 442 PFGSGRRM 449
>sp|Q59676|MUTA_PORGI Methylmalonyl-CoA mutase small subunit OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=mutA PE=3 SV=2
Length = 618
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 290 ASRLSTTQLICIKKMNPTHTCEGAVVTNGNQATRSWVASIIKEKLKVFPNYKPKDIVNDI 349
A L +++ + +N + GA +T +W A ++ +KL YKP++I + I
Sbjct: 202 ARELPAFRVLNVNAVNLSDA--GAFITQELGYALAWGAELL-DKL-TDAGYKPEEIASRI 257
Query: 350 KQEYGIQLNYFQAWRGKEIAK--------EQLQGSYKEAY 381
K +GI NYF EIAK Q+ GSY + Y
Sbjct: 258 KFNFGIGSNYFM-----EIAKFRAARWLWAQIVGSYGDQY 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,774,840
Number of Sequences: 539616
Number of extensions: 12864375
Number of successful extensions: 34343
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 34337
Number of HSP's gapped (non-prelim): 15
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)