Query 003638
Match_columns 806
No_of_seqs 374 out of 1823
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 17:41:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003638.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1689-1693//hhsearch_pdb/003638hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 1.0 1 1 51.7 7.8 69 68-142 15-86 (103)
2 1vd2_A Protein kinase C, IOTA 1.0 1 1 41.0 9.3 74 65-141 11-87 (89)
3 1oey_A P67-PHOX, neutrophil cy 1.0 1 1 38.6 7.0 73 64-141 9-81 (83)
4 1q1o_A Cell division control p 1.0 1 1 36.3 6.2 60 70-131 22-86 (98)
5 1pqs_A Cell division control p 1.0 1 1 35.0 5.0 57 71-129 2-63 (77)
6 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 33.5 9.3 71 68-141 18-100 (102)
7 2ktr_A Sequestosome-1; autopha 1.0 1 1 31.1 9.8 71 68-141 33-115 (117)
8 2jrh_A Mitogen-activated prote 1.0 1 1 29.3 8.9 71 65-142 9-82 (94)
9 2c60_A Human mitogen-activated 1.0 1 1 29.1 7.9 70 65-141 36-108 (111)
10 1wmh_B Partitioning defective- 1.0 1 1 29.1 7.5 70 68-141 13-84 (86)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=51.71 Aligned_cols=69 Identities=16% Similarity=0.446 Sum_probs=59.3
Q ss_pred ECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCC---CEEEEEEEE
Q ss_conf 269258999369989599999999880788763899998189984039971848899999741897---739999976
Q 003638 68 KGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDS---ATTDVFVIL 142 (806)
Q Consensus 68 ~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~---~~v~iyv~~ 142 (806)
-+|++++|.++|.++|.||..|+.+.|| .++.|.|+ ++..+|||.+++||.+-+|..+.. ....|++..
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fG---q~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHS---SCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 2673789963687429999999999859---74668985---561777515788999999987037766653899955
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=40.96 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=57.9
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCC--EEEEEEE
Q ss_conf 89726925899936998959999999988078876-38999981899840399718488999997418977--3999997
Q 003638 65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFN-AILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSA--TTDVFVI 141 (806)
Q Consensus 65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~-~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~~--~v~iyv~ 141 (806)
+.|. |+.+.+.++..++|.+|..|+.+.+++... .++++| ..+...++++++|+||...+..+.-.. ..-++|.
T Consensus 11 ~~~~-gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky--~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf 87 (89)
T 1vd2_A 11 AYYR-GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW--IDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVF 87 (89)
T ss_dssp EESS-SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE--CCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEE
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE--ECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9947-8599998799989999999999996889898279999--989979503348899999999987057877899973
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=38.58 Aligned_cols=73 Identities=8% Similarity=0.175 Sum_probs=60.8
Q ss_pred CEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 889726925899936998959999999988078876389999818998403997184889999974189773999997
Q 003638 64 SLSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVI 141 (806)
Q Consensus 64 ~~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~~~v~iyv~ 141 (806)
+++|. .+-+|.|+++++|.+|..+|+++|.+-...+.+.|.-+ +...++ +.+|+|++.++....++. .-+|+.
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~v-i~~d~dl~~aw~~~~n~~-LtL~C~ 81 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELV-PLSEDSMKDAWGQVKNYC-LTLWCE 81 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCE-ECCTTTHHHHHTTCBTTE-EEEEEC
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCCEE-CCCHHHHHHHHHHCCCCC-EEEEEE
T ss_conf 99999--99999977999989999999998589964149996078-789701-357577999997523880-899982
No 4
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=36.30 Aligned_cols=60 Identities=12% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCC-----CCEEEEEECCCCCCEEEEEECHHHHHHHHHHCC
Q ss_conf 92589993699895999999998807887-----638999981899840399718488999997418
Q 003638 70 GDAHAIDVDEQMKFNDFKTEVAEMFNCSF-----NAILLKYFLPGNKKTLITISNDKDLQRMIKFNG 131 (806)
Q Consensus 70 g~~~~i~v~~~~s~~e~~~~l~~~~~~~~-----~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~ 131 (806)
+++..|.|+.+++|.+|..++.++|++.. ....++|+ .+....+++.+|+|++..++...
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEdGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSSSCEEEECSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCCCCEEEECCHHHHHHHHHHHH
T ss_conf 867999966999899999999999767865454650479999--69999887728899999999977
No 5
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=1.00 E-value=1 Score=34.98 Aligned_cols=57 Identities=12% Similarity=0.267 Sum_probs=48.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCC-----CCCEEEEEECCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 258999369989599999999880788-----76389999818998403997184889999974
Q 003638 71 DAHAIDVDEQMKFNDFKTEVAEMFNCS-----FNAILLKYFLPGNKKTLITISNDKDLQRMIKF 129 (806)
Q Consensus 71 ~~~~i~v~~~~s~~e~~~~l~~~~~~~-----~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~ 129 (806)
+...|.|+.+++|.+|..|+.++|+.. ...+.++|+ .+....+++.+|+|+..-++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEdGD~Vti~sddDl~~A~~~ 63 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKEM 63 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETTTEEEECCSTTHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCCCCEEEECCHHHHHHHHHH
T ss_conf 78999967999899999999999746656465650689999--589999877388999999999
No 6
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=33.45 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=57.0
Q ss_pred ECCCEEEEEECCC-----------CCHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCE
Q ss_conf 2692589993699-----------89599999999880-78876389999818998403997184889999974189773
Q 003638 68 KGGDAHAIDVDEQ-----------MKFNDFKTEVAEMF-NCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSAT 135 (806)
Q Consensus 68 ~Gg~~~~i~v~~~-----------~s~~e~~~~l~~~~-~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~~~ 135 (806)
.|++.|-+.++++ .||.+|..++.+.| ++....+.++|. .+..-||++++|++|...+.... -+.
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlItiSsDeEL~~Al~~~~-~~~ 94 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 94 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCEEEECCHHHHHHHHHHCC-CCE
T ss_conf 787269988336777542224466669999999999754457983899999--89999897648899999997158-875
Q ss_pred EEEEEE
Q ss_conf 999997
Q 003638 136 TDVFVI 141 (806)
Q Consensus 136 v~iyv~ 141 (806)
..+||.
T Consensus 95 lRlyVk 100 (102)
T 2kkc_A 95 FRIYIK 100 (102)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999997
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=31.09 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=57.8
Q ss_pred ECCCEEEEEECCC-----------CCHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCE
Q ss_conf 2692589993699-----------89599999999880-78876389999818998403997184889999974189773
Q 003638 68 KGGDAHAIDVDEQ-----------MKFNDFKTEVAEMF-NCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSAT 135 (806)
Q Consensus 68 ~Gg~~~~i~v~~~-----------~s~~e~~~~l~~~~-~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~~~ 135 (806)
.+++.|-+.++.+ .||.+|..++.+.| ++....+.++|. .+..-||++++|++|..-+.... -+.
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlItISsDeEL~~Al~~~~-~~~ 109 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 109 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE--CCCCCEEEECCHHHHHHHHHHCC-CCE
T ss_conf 887279988426777431124567779999999999734558983899999--89999897638899999998337-881
Q ss_pred EEEEEE
Q ss_conf 999997
Q 003638 136 TDVFVI 141 (806)
Q Consensus 136 v~iyv~ 141 (806)
..+||.
T Consensus 110 lRlyVk 115 (117)
T 2ktr_A 110 FRIYIK 115 (117)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 899998
No 8
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=1.00 E-value=1 Score=29.27 Aligned_cols=71 Identities=20% Similarity=0.433 Sum_probs=58.2
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHC---CCCCEEEEEEE
Q ss_conf 897269258999369989599999999880788763899998189984039971848899999741---89773999997
Q 003638 65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFN---GDSATTDVFVI 141 (806)
Q Consensus 65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~---~~~~~v~iyv~ 141 (806)
.+|. |+.++|..+|-+.|.|+..|+.+.|| .++.+.|. ++-.+|||.+-+||++-++.. ....+..|.+.
T Consensus 9 fE~~-gEKRIi~f~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 9 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHC---SSEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8862-70589964898449999999999968---81435773---45467752577889999998605844142689997
Q ss_pred E
Q ss_conf 6
Q 003638 142 L 142 (806)
Q Consensus 142 ~ 142 (806)
.
T Consensus 82 ~ 82 (94)
T 2jrh_A 82 S 82 (94)
T ss_dssp E
T ss_pred C
T ss_conf 3
No 9
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=1.00 E-value=1 Score=29.13 Aligned_cols=70 Identities=20% Similarity=0.444 Sum_probs=56.8
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCC---CCEEEEEEE
Q ss_conf 89726925899936998959999999988078876389999818998403997184889999974189---773999997
Q 003638 65 LSYKGGDAHAIDVDEQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGD---SATTDVFVI 141 (806)
Q Consensus 65 ~~Y~Gg~~~~i~v~~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~---~~~v~iyv~ 141 (806)
.+|. |+.++|..+|-+.|.|+..|+.+.|| .++.+.|. ++-.+|||.+-+||++-++..+. ..+..|.+.
T Consensus 36 fE~~-gEKRIiqf~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 108 (111)
T 2c60_A 36 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 108 (111)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEEC-CCEEEEECCCCCCHHHHHHHHHHHHC---CEEEEEEE---CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 8852-70689954797448999999999868---81436774---56677853567889999998605844142689985
No 10
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=29.09 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=54.0
Q ss_pred ECCCEEEEEEC--CCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 26925899936--998959999999988078876389999818998403997184889999974189773999997
Q 003638 68 KGGDAHAIDVD--EQMKFNDFKTEVAEMFNCSFNAILLKYFLPGNKKTLITISNDKDLQRMIKFNGDSATTDVFVI 141 (806)
Q Consensus 68 ~Gg~~~~i~v~--~~~s~~e~~~~l~~~~~~~~~~~~~~y~lp~~~~~l~~i~~D~d~~~M~~~~~~~~~v~iyv~ 141 (806)
-|++.|=+.++ ...+|.+|..++...+++...++.+.|. ...--|++++||+++..-+..... ...+||-
T Consensus 13 f~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~--D~dGDLlpInnDdnl~~Al~~a~p--lLRl~Iq 84 (86)
T 1wmh_B 13 FDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYT--DAHGDLLPLTNDDSLHRALASGPP--PLRLLVQ 84 (86)
T ss_dssp ETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEE--CTTSCEEECCSHHHHHHHTTSSSS--CEEEEEE
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE--CCCCCEEEECCHHHHHHHHHHCCC--CEEEEEE
T ss_conf 38804676726887878899999999975789987899998--899997614588999999972887--4799997
Done!