Query 003639
Match_columns 806
No_of_seqs 462 out of 3842
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:13:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.2E-58 9.2E-63 523.5 21.8 356 1-392 306-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.2E-51 6.9E-56 494.9 40.4 547 1-717 340-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.3E-33 2.8E-38 343.1 29.1 504 208-779 70-590 (968)
4 PLN00113 leucine-rich repeat r 100.0 3.7E-33 8E-38 339.1 25.9 498 206-773 92-607 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.6E-28 255.4 24.1 373 248-774 550-944 (1153)
6 KOG4194 Membrane glycoprotein 99.9 5.5E-24 1.2E-28 218.4 8.8 177 204-395 49-232 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 9E-27 2E-31 228.5 -15.0 456 207-771 68-539 (565)
8 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4.2E-28 214.4 8.1 365 281-792 80-446 (873)
9 KOG0618 Serine/threonine phosp 99.9 5.6E-25 1.2E-29 237.8 -4.1 468 212-773 3-489 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.2E-25 2.5E-30 220.7 -10.4 480 208-799 46-543 (565)
11 KOG0444 Cytoskeletal regulator 99.9 7.8E-25 1.7E-29 225.8 -6.7 176 205-397 5-186 (1255)
12 KOG0618 Serine/threonine phosp 99.9 3.6E-24 7.8E-29 231.6 -7.0 433 209-747 47-489 (1081)
13 KOG0444 Cytoskeletal regulator 99.9 6.6E-24 1.4E-28 219.0 -5.4 369 228-777 6-379 (1255)
14 PF00931 NB-ARC: NB-ARC domain 99.8 4.9E-20 1.1E-24 191.5 5.8 132 4-137 149-285 (287)
15 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.1E-23 150.5 -5.2 166 220-403 24-192 (264)
16 KOG0617 Ras suppressor protein 99.6 3.2E-17 6.9E-22 142.9 -4.4 156 201-362 27-186 (264)
17 PRK15387 E3 ubiquitin-protein 99.5 6.8E-13 1.5E-17 149.9 15.8 156 209-401 203-359 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 2.8E-13 6.2E-18 154.0 11.5 138 208-362 179-317 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 1.9E-12 4.2E-17 146.3 16.8 174 189-401 205-379 (788)
20 KOG4237 Extracellular matrix p 99.4 8.2E-15 1.8E-19 144.9 -2.4 141 190-334 51-198 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 5.4E-13 1.2E-17 151.8 10.9 228 204-482 196-426 (754)
22 KOG4237 Extracellular matrix p 99.3 5.8E-14 1.3E-18 139.0 -3.6 294 212-563 51-355 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1.3E-12 2.7E-17 151.2 6.0 174 207-398 545-731 (889)
24 KOG4341 F-box protein containi 99.1 5.9E-13 1.3E-17 133.2 -8.8 147 644-800 318-467 (483)
25 KOG4341 F-box protein containi 99.1 5.3E-13 1.2E-17 133.5 -9.7 289 446-792 139-433 (483)
26 cd00116 LRR_RI Leucine-rich re 99.1 7.1E-11 1.5E-15 125.0 4.2 181 208-397 24-234 (319)
27 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.2E-16 127.0 -3.6 177 208-404 76-254 (722)
28 KOG1259 Nischarin, modulator o 99.0 7.8E-11 1.7E-15 112.7 0.2 184 204-402 211-417 (490)
29 KOG0532 Leucine-rich repeat (L 99.0 2.9E-11 6.2E-16 125.7 -3.9 188 211-418 54-246 (722)
30 PF14580 LRR_9: Leucine-rich r 99.0 3.8E-10 8.2E-15 104.5 3.7 133 217-355 7-146 (175)
31 cd00116 LRR_RI Leucine-rich re 98.9 6.6E-10 1.4E-14 117.6 4.3 239 227-512 21-289 (319)
32 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 100.6 5.5 122 207-333 19-149 (175)
33 COG4886 Leucine-rich repeat (L 98.8 6.7E-09 1.4E-13 113.2 5.8 174 207-399 116-292 (394)
34 COG4886 Leucine-rich repeat (L 98.7 2.1E-08 4.5E-13 109.3 5.3 104 254-359 114-219 (394)
35 KOG3207 Beta-tubulin folding c 98.6 9.1E-09 2E-13 104.2 0.2 188 206-400 120-317 (505)
36 KOG1259 Nischarin, modulator o 98.6 8.9E-09 1.9E-13 98.9 -0.9 130 227-363 282-413 (490)
37 PRK15386 type III secretion pr 98.5 2.2E-07 4.7E-12 96.7 8.3 161 526-773 50-213 (426)
38 PRK15386 type III secretion pr 98.5 1.8E-07 3.8E-12 97.3 5.6 118 642-788 48-183 (426)
39 KOG3207 Beta-tubulin folding c 98.4 1.2E-07 2.7E-12 96.2 3.0 181 204-397 143-339 (505)
40 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.3E-13 97.4 -3.3 82 281-362 187-273 (419)
41 PLN03150 hypothetical protein; 98.4 6.2E-07 1.3E-11 102.4 8.9 101 258-359 420-525 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.2E-12 69.8 3.8 54 258-311 3-59 (61)
43 PLN03150 hypothetical protein; 98.4 6.9E-07 1.5E-11 102.0 8.5 107 230-339 419-530 (623)
44 PF13855 LRR_8: Leucine rich r 98.3 4.3E-07 9.3E-12 68.9 3.7 57 302-359 2-59 (61)
45 KOG1859 Leucine-rich repeat pr 98.2 1.8E-08 3.9E-13 108.1 -9.1 174 206-397 108-292 (1096)
46 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.7E-12 102.1 -2.3 107 253-362 92-199 (414)
47 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 57.0 3.6 37 257-293 2-38 (44)
48 KOG2120 SCF ubiquitin ligase, 98.0 7.1E-07 1.5E-11 86.1 -2.2 173 207-394 185-373 (419)
49 KOG0531 Protein phosphatase 1, 98.0 8.9E-07 1.9E-11 96.6 -2.2 170 209-399 74-247 (414)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 55.6 4.0 38 302-340 2-39 (44)
51 KOG3665 ZYG-1-like serine/thre 97.9 4.9E-06 1.1E-10 94.6 1.8 124 207-333 122-259 (699)
52 KOG1909 Ran GTPase-activating 97.8 2.1E-06 4.6E-11 85.1 -1.4 94 442-538 210-308 (382)
53 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 91.3 3.4 104 229-334 122-230 (699)
54 KOG2982 Uncharacterized conser 97.8 9E-06 1.9E-10 78.7 1.5 82 253-334 68-156 (418)
55 KOG1947 Leucine rich repeat pr 97.8 1.8E-06 3.8E-11 97.3 -4.2 120 443-567 186-308 (482)
56 KOG1909 Ran GTPase-activating 97.7 1E-05 2.2E-10 80.4 0.5 181 208-397 93-311 (382)
57 KOG2982 Uncharacterized conser 97.6 1.3E-05 2.8E-10 77.7 0.5 14 469-482 197-210 (418)
58 KOG4579 Leucine-rich repeat (L 97.6 5.2E-06 1.1E-10 70.9 -2.0 80 255-334 52-133 (177)
59 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 2.9E-11 94.1 -7.1 124 207-335 164-290 (1096)
60 KOG1644 U2-associated snRNP A' 97.4 0.00033 7.2E-09 64.5 5.7 81 253-333 61-149 (233)
61 KOG4579 Leucine-rich repeat (L 97.3 4.9E-05 1.1E-09 65.1 -0.6 108 209-319 29-141 (177)
62 KOG1644 U2-associated snRNP A' 97.2 0.00056 1.2E-08 63.0 5.0 100 282-392 45-148 (233)
63 KOG1947 Leucine rich repeat pr 96.8 9.1E-05 2E-09 83.4 -4.1 198 526-774 186-390 (482)
64 COG5238 RNA1 Ran GTPase-activa 96.7 0.0017 3.7E-08 62.6 4.1 82 254-335 28-131 (388)
65 KOG2123 Uncharacterized conser 96.6 0.00012 2.6E-09 70.5 -4.3 80 255-335 18-99 (388)
66 KOG2123 Uncharacterized conser 96.5 0.00028 6.1E-09 68.0 -2.7 77 229-311 19-98 (388)
67 KOG2739 Leucine-rich acidic nu 96.2 0.0017 3.6E-08 62.7 0.9 102 253-355 40-149 (260)
68 KOG2739 Leucine-rich acidic nu 96.0 0.0038 8.2E-08 60.3 2.3 103 207-334 43-153 (260)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0037 8.1E-08 35.7 0.9 21 302-322 1-21 (22)
70 PF13306 LRR_5: Leucine rich r 95.8 0.037 8E-07 49.2 7.7 117 225-351 8-128 (129)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.0091 2E-07 34.1 0.4 19 258-276 2-20 (22)
72 PF13306 LRR_5: Leucine rich r 94.8 0.099 2.1E-06 46.4 7.2 105 248-358 4-112 (129)
73 KOG3864 Uncharacterized conser 94.3 0.0075 1.6E-07 55.9 -1.4 15 701-715 151-165 (221)
74 KOG3864 Uncharacterized conser 94.2 0.0099 2.1E-07 55.1 -0.7 67 499-567 123-189 (221)
75 COG5238 RNA1 Ran GTPase-activa 94.1 0.06 1.3E-06 52.3 4.2 109 225-335 88-225 (388)
76 PF13504 LRR_7: Leucine rich r 93.7 0.044 9.6E-07 29.0 1.4 16 302-317 2-17 (17)
77 PRK04841 transcriptional regul 92.4 1.6 3.5E-05 53.4 14.3 150 6-183 176-332 (903)
78 KOG0473 Leucine-rich repeat pr 92.4 0.0069 1.5E-07 57.2 -4.8 83 253-335 39-122 (326)
79 PF13504 LRR_7: Leucine rich r 91.6 0.096 2.1E-06 27.7 1.0 15 257-271 2-16 (17)
80 KOG0473 Leucine-rich repeat pr 90.6 0.0072 1.6E-07 57.0 -6.6 90 270-361 32-123 (326)
81 smart00370 LRR Leucine-rich re 89.0 0.32 6.9E-06 29.0 1.9 20 300-319 1-20 (26)
82 smart00369 LRR_TYP Leucine-ric 89.0 0.32 6.9E-06 29.0 1.9 20 300-319 1-20 (26)
83 PRK00080 ruvB Holliday junctio 85.1 2.9 6.3E-05 44.1 7.7 135 4-162 172-309 (328)
84 smart00367 LRR_CC Leucine-rich 83.0 0.66 1.4E-05 27.7 1.1 16 759-774 1-16 (26)
85 smart00369 LRR_TYP Leucine-ric 82.1 0.94 2E-05 26.9 1.5 19 256-274 2-20 (26)
86 smart00370 LRR Leucine-rich re 82.1 0.94 2E-05 26.9 1.5 19 256-274 2-20 (26)
87 TIGR00635 ruvB Holliday juncti 82.0 4.6 9.9E-05 42.1 7.7 135 4-162 151-288 (305)
88 TIGR03015 pepcterm_ATPase puta 79.6 8.3 0.00018 39.2 8.5 56 4-59 184-242 (269)
89 PF13516 LRR_6: Leucine Rich r 69.0 1.2 2.5E-05 25.9 -0.6 12 280-291 3-14 (24)
90 smart00364 LRR_BAC Leucine-ric 66.3 3.7 8.1E-05 24.4 1.2 18 301-318 2-19 (26)
91 smart00365 LRR_SD22 Leucine-ri 61.5 6.4 0.00014 23.5 1.6 17 300-316 1-17 (26)
92 KOG4308 LRR-containing protein 44.9 0.61 1.3E-05 51.3 -8.2 132 257-397 145-303 (478)
93 smart00368 LRR_RI Leucine rich 40.0 19 0.00042 21.8 1.4 15 279-293 2-16 (28)
94 KOG4308 LRR-containing protein 27.1 3.1 6.7E-05 45.9 -6.4 110 253-362 169-303 (478)
95 PRK06893 DNA replication initi 26.5 1.5E+02 0.0032 29.3 5.9 48 3-52 152-200 (229)
96 PF14164 YqzH: YqzH-like prote 23.3 1.3E+02 0.0028 22.6 3.4 35 8-42 22-58 (64)
97 PRK00411 cdc6 cell division co 23.1 6.3E+02 0.014 27.1 10.7 137 5-161 200-356 (394)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-58 Score=523.55 Aligned_cols=356 Identities=30% Similarity=0.468 Sum_probs=270.2
Q ss_pred CCCcceeeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHccCChhHHHHHHHHhcCC-ChhHHHHHHHHhcCC
Q 003639 1 MGSQKNFSIDILNEEEAWRLFKLVADDH--VENREFKSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMP 77 (806)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~-~~~~W~~~l~~~~~~ 77 (806)
||+...+++++|+.+|||+||+++|++. ...+.++++|++||+||+|||||+++||+.|+.| +.++|+++.+.+.+.
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 7888999999999999999999999542 3345599999999999999999999999999999 889999999988632
Q ss_pred CCCCCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcC--CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHH
Q 003639 78 SEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG--NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELR 155 (806)
Q Consensus 78 ~~~~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp--~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~ 155 (806)
..-+..+..+.|+++|++||++||.+ +|.||+|||+|| |.|++++||.+||||||+++....+.+++.+++|+.+|+
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 22334455778999999999999966 999999999999 999999999999999999885556778888888999999
Q ss_pred hcccccccC---CCCceeecHHHHHHHHHHHh-----hcCceEEecCcccCCCCccccccccEEEEEeCCCCCCCCCCCC
Q 003639 156 DSCLLLEGD---SNQELSMHDVIRDVAISIAC-----REQHAVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLE 227 (806)
Q Consensus 156 ~~~l~~~~~---~~~~~~mHdli~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~ 227 (806)
++++++..+ ....|+|||+|||+|.++|. +|+.++..+ .+....+....+..+|++++.++.+..++....
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCCCC
Confidence 999999775 33679999999999999999 666444332 233334555556789999999999999999889
Q ss_pred CCCccEEEecCCCC-cccccCCChhhhcCCCceEEEeecC-CCccCCcccccccCCcEEEecCcCCCCchhhcCCCccce
Q 003639 228 CPRLEFLHINPKDS-LFDINNPCNFFTGMRKLRVVDFTRM-QLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI 305 (806)
Q Consensus 228 ~~~Lr~L~l~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~ 305 (806)
+++|++|.+.+|.. ...+ +..+|..++.||+|||++| .+.++|++|+.|.|||||+++++.+
T Consensus 544 ~~~L~tLll~~n~~~l~~i--s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-------------- 607 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI--SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-------------- 607 (889)
T ss_pred CCccceEEEeecchhhhhc--CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc--------------
Confidence 99999999999863 5666 7777899999999999975 4555777766666666666666554
Q ss_pred EeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCC
Q 003639 306 LSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPR 385 (806)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 385 (806)
+.+|.++++|++|++|++..+..+..+|. ++..|++||+|.+...... .....+.++.++.+
T Consensus 608 --------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~---------~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 608 --------SHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS---------NDKLLLKELENLEH 669 (889)
T ss_pred --------cccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc---------cchhhHHhhhcccc
Confidence 45555555555555555554443333322 2444555555555433211 11233445555555
Q ss_pred CcEEEEE
Q 003639 386 LATLEVH 392 (806)
Q Consensus 386 L~~L~l~ 392 (806)
|+.+.+.
T Consensus 670 L~~ls~~ 676 (889)
T KOG4658|consen 670 LENLSIT 676 (889)
T ss_pred hhhheee
Confidence 5555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.2e-51 Score=494.89 Aligned_cols=547 Identities=21% Similarity=0.286 Sum_probs=365.3
Q ss_pred CCCcceeeCCCCCHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCC
Q 003639 1 MGSQKNFSIDILNEEEAWRLFKLVA-DDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSE 79 (806)
Q Consensus 1 ~~~~~~~~l~~L~~~~~~~Lf~~~a-~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~ 79 (806)
++++++|+|+.|+++|||+||+++| +...+++++++++++||++|+|+||||+++|+.|++++..+|+++++++.
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~---- 415 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR---- 415 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH----
Confidence 3578899999999999999999999 44445678999999999999999999999999999999999999999986
Q ss_pred CCCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcCCCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhccc
Q 003639 80 VNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCL 159 (806)
Q Consensus 80 ~~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~l 159 (806)
. ..+.+|.++|++||++|+++..|.||+|+|+||...+++. +..|.|.+..... ..++.|+++||
T Consensus 416 ~---~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~~-----------~~l~~L~~ksL 480 (1153)
T PLN03210 416 N---GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDVN-----------IGLKNLVDKSL 480 (1153)
T ss_pred h---CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCch-----------hChHHHHhcCC
Confidence 2 2345799999999999986435999999999995555554 5666766544321 12889999999
Q ss_pred ccccCCCCceeecHHHHHHHHHHHhhcCceEEecCcccCCCCccc---------cccccEEEEEeCCCCCCCC----CCC
Q 003639 160 LLEGDSNQELSMHDVIRDVAISIACREQHAVLVRNEDVWEWPDDI---------ALKECYAISLRGCSIHELP----EGL 226 (806)
Q Consensus 160 ~~~~~~~~~~~mHdli~~l~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~lr~l~l~~~~~~~l~----~~~ 226 (806)
++.. .++++|||++|+||+++++++.. ..+.+...|...+ -.++++.+++....+..+. .+.
T Consensus 481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 481 IHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFK 555 (1153)
T ss_pred EEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHh
Confidence 9865 45799999999999999987641 1111222222211 1345677777655553321 145
Q ss_pred CCCCccEEEecCCC------CcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcC
Q 003639 227 ECPRLEFLHINPKD------SLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGK 299 (806)
Q Consensus 227 ~~~~Lr~L~l~~~~------~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~ 299 (806)
.+++|+.|.+..+. ....+ |..+..-..+||.|++.++.+..+|..+ ...+|+.|++++|.+.. +..+..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~l--p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHL--PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeec--CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 67777777765432 11223 4444222345777777777777777666 45677777777777666 666667
Q ss_pred CCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhcccc
Q 003639 300 LKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD 378 (806)
Q Consensus 300 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 378 (806)
+++|++|+++++ .+..+|. ++.+++|++|++.+|..+..+|.. ++++++|++|++++|..... .+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~-----------Lp~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEI-----------LPT 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCc-----------cCC
Confidence 777777777765 4556653 666777777777777666677765 67777777777766543211 111
Q ss_pred ccCCCCCCcEEEEEecCC-CcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCC
Q 003639 379 ELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQD 457 (806)
Q Consensus 379 ~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 457 (806)
.+ ++++|+.|+++++.. ..+|. ...+|+.|++.++.
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~-----------------------------------------~~~nL~~L~L~~n~- 736 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPD-----------------------------------------ISTNISWLDLDETA- 736 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcccccc-----------------------------------------ccCCcCeeecCCCc-
Confidence 11 344444444443321 00000 02234444444322
Q ss_pred cchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCCCccEEEEec
Q 003639 458 VKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEH 537 (806)
Q Consensus 458 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 537 (806)
++.++.. ..+++|++|.+.++.....+ . .+..+. ......+++|+.|++.+
T Consensus 737 i~~lP~~---~~l~~L~~L~l~~~~~~~l~-~-----------------------~~~~l~--~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 737 IEEFPSN---LRLENLDELILCEMKSEKLW-E-----------------------RVQPLT--PLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred ccccccc---ccccccccccccccchhhcc-c-----------------------cccccc--hhhhhccccchheeCCC
Confidence 2222211 12344444444433210000 0 000000 00112357899999999
Q ss_pred CCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCc
Q 003639 538 CDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGM 617 (806)
Q Consensus 538 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~ 617 (806)
|+.+..+|. .++++++|+.|++.+|..++.++. . ..+++|+.|++++|.++..+|.
T Consensus 788 n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~----------~-~~L~sL~~L~Ls~c~~L~~~p~----------- 843 (1153)
T PLN03210 788 IPSLVELPS--SIQNLHKLEHLEIENCINLETLPT----------G-INLESLESLDLSGCSRLRTFPD----------- 843 (1153)
T ss_pred CCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC----------C-CCccccCEEECCCCCccccccc-----------
Confidence 888888864 467899999999999998887762 1 2678999999999988877654
Q ss_pred ccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhH
Q 003639 618 HETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML 697 (806)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 697 (806)
..++|+.|+++++.++.++.. +..+++|+.|++++|++|+.++. ..
T Consensus 844 --------------------------~~~nL~~L~Ls~n~i~~iP~s------i~~l~~L~~L~L~~C~~L~~l~~--~~ 889 (1153)
T PLN03210 844 --------------------------ISTNISDLNLSRTGIEEVPWW------IEKFSNLSFLDMNGCNNLQRVSL--NI 889 (1153)
T ss_pred --------------------------cccccCEeECCCCCCccChHH------HhcCCCCCEEECCCCCCcCccCc--cc
Confidence 246899999999988876642 45789999999999999999863 45
Q ss_pred hhhcccceEEEeccccccee
Q 003639 698 GSFEHLQHLEIRHCKGLQEI 717 (806)
Q Consensus 698 ~~l~~L~~L~i~~C~~L~~i 717 (806)
..+++|+.|++++|++|..+
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCCCeeecCCCcccccc
Confidence 67899999999999998865
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-33 Score=343.05 Aligned_cols=504 Identities=18% Similarity=0.147 Sum_probs=249.8
Q ss_pred ccEEEEEeCCCCCCC-CC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEE
Q 003639 208 ECYAISLRGCSIHEL-PE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTL 284 (806)
Q Consensus 208 ~lr~l~l~~~~~~~l-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L 284 (806)
+++.|+++++.+... +. +..+++|++|++++|.....+ |..++..+++||+|++++|.+.. +|. +.+++|++|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~i--p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI--PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcC--ChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 455566655554322 21 344556666666655444445 55554555666666666555543 332 345555555
Q ss_pred EecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcc
Q 003639 285 CLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFV 361 (806)
Q Consensus 285 ~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~ 361 (806)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 555555543 455555555555555555443 45555555555555555555433344443 55555555555555544
Q ss_pred cccCCCCCchhhhccccccCCCCCCcEEEEEecCCC-cCCcccc-ccccceEEEeeeecC--------ccccceEEEeec
Q 003639 362 EWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN-VLPEGFF-ARKLERLSWALFAID--------DHETMRTLKLKL 431 (806)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~~~~~~~~--------~~~~l~~l~l~~ 431 (806)
.. ..+..++++++|+.|++++|... .+|..+. +++|+.|.+..+... ....++.++++.
T Consensus 225 ~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 SG-----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CC-----------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 31 22234455555555555554432 2333221 334444433222110 012344444443
Q ss_pred Cccc-ccccccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccc
Q 003639 432 NSVS-ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN 510 (806)
Q Consensus 432 ~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 510 (806)
+... ..|.++..+++|+.|+++++......+..+ ..+++|+.|++.+|.....++ .....+++|+.|++.+
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIP------KNLGKHNNLTVLDLST 365 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCC------hHHhCCCCCcEEECCC
Confidence 3322 234444555666666665554433333322 345666666665553211111 0123345556666655
Q ss_pred ccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCccccccccccccccc
Q 003639 511 LIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590 (806)
Q Consensus 511 ~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L 590 (806)
+.-...++.. ...+++|+.|++.++ ++....+ ..+..+++|+.|++.+|.....++ ..+..+++|
T Consensus 366 n~l~~~~p~~---~~~~~~L~~L~l~~n-~l~~~~p-~~~~~~~~L~~L~L~~n~l~~~~p----------~~~~~l~~L 430 (968)
T PLN00113 366 NNLTGEIPEG---LCSSGNLFKLILFSN-SLEGEIP-KSLGACRSLRRVRLQDNSFSGELP----------SEFTKLPLV 430 (968)
T ss_pred CeeEeeCChh---HhCcCCCCEEECcCC-EecccCC-HHHhCCCCCCEEECcCCEeeeECC----------hhHhcCCCC
Confidence 4321111111 223445555555552 2222222 233445555555555554222211 223344445
Q ss_pred ceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccc
Q 003639 591 RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAM 670 (806)
Q Consensus 591 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~ 670 (806)
+.|+++++.-...++..... .+.+..+. +..+.-....+.....++|+.|++++|.+....+..
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~--------L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~----- 494 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWD---MPSLQMLS--------LARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK----- 494 (968)
T ss_pred CEEECcCCcccCccChhhcc---CCCCcEEE--------CcCceeeeecCcccccccceEEECcCCccCCccChh-----
Confidence 55555444321111110000 00000000 000000000111223468888888888766543332
Q ss_pred cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL 750 (806)
Q Consensus 671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 750 (806)
|..+++|++|++++| +++...| ..+.++++|++|+|++|. +...+ +.... .+++|+.|++++|.-...+
T Consensus 495 ~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~-l~~~~-p~~~~-------~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 495 LGSLSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLDLSHNQ-LSGQI-PASFS-------EMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred hhhhhccCEEECcCC-cceeeCC-hHHcCccCCCEEECCCCc-ccccC-ChhHh-------CcccCCEEECCCCcccccC
Confidence 457888999999885 5554422 556788899999999864 44332 22222 4788999999988766677
Q ss_pred CCCCCcCCCCCcCEEeEecCCCceeeccc
Q 003639 751 YPGMHTSEWPALKLLDVSACDQVTVFDSE 779 (806)
Q Consensus 751 ~~~~~~~~l~sL~~L~i~~C~~L~~lp~~ 779 (806)
|.. +.++++|+.|++++|+-...+|..
T Consensus 564 p~~--l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 564 PKN--LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred Chh--HhcCcccCEEeccCCcceeeCCCc
Confidence 776 456789999999988877788864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-33 Score=339.09 Aligned_cols=498 Identities=18% Similarity=0.162 Sum_probs=324.3
Q ss_pred ccccEEEEEeCCCCC-CCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCC
Q 003639 206 LKECYAISLRGCSIH-ELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNL 281 (806)
Q Consensus 206 ~~~lr~l~l~~~~~~-~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L 281 (806)
+++++.|++++|.+. .+|. +..+++||+|++++|.....+ |. +.+++|++|++++|.+.. +|..++.+++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI--PR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc--Cc---cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 567888888888774 5665 236788888888887655555 54 457778888888887764 77778888888
Q ss_pred cEEEecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639 282 QTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358 (806)
Q Consensus 282 ~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 358 (806)
++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~ 245 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVY 245 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcC
Confidence 888888887654 777888888888888888766 56777888888888888877644456665 78888888888887
Q ss_pred CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC-cCCcccc-ccccceEEEeeeecC--------ccccceEEE
Q 003639 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN-VLPEGFF-ARKLERLSWALFAID--------DHETMRTLK 428 (806)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~-~~~L~~L~~~~~~~~--------~~~~l~~l~ 428 (806)
|.+. ...+..++++++|+.|+++++... .+|..+. +.+|+.|.+.++... ....++.++
T Consensus 246 n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 246 NNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred ceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 7665 223456777777888877776643 3444433 566776665443221 124677777
Q ss_pred eecCccc-ccccccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEe
Q 003639 429 LKLNSVS-ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN 507 (806)
Q Consensus 429 l~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 507 (806)
+..+... ..+.++..+++|+.|+++++......+..+ +.+++|+.|+++++.....++ .....+++|+.|.
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p------~~~~~~~~L~~L~ 386 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIP------EGLCSSGNLFKLI 386 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCC------hhHhCcCCCCEEE
Confidence 7665443 345667788999999998876655555544 568899999998874322221 1223456788888
Q ss_pred cccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccc
Q 003639 508 LYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEF 587 (806)
Q Consensus 508 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l 587 (806)
+.++.-...++. ....+++|+.|++.+|+ ++...+ ..+..+++|+.|+++++.....++ .....+
T Consensus 387 l~~n~l~~~~p~---~~~~~~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~l 451 (968)
T PLN00113 387 LFSNSLEGEIPK---SLGACRSLRRVRLQDNS-FSGELP-SEFTKLPLVYFLDISNNNLQGRIN----------SRKWDM 451 (968)
T ss_pred CcCCEecccCCH---HHhCCCCCCEEECcCCE-eeeECC-hhHhcCCCCCEEECcCCcccCccC----------hhhccC
Confidence 877643222221 23467788888888753 443323 345677888888888765332222 233457
Q ss_pred cccceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCc
Q 003639 588 GQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLP 667 (806)
Q Consensus 588 ~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~ 667 (806)
++|+.|++++|.....+|.......+.. ..+....+ ..........+++|+.|++++|.+....+..
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~~~~~L~~--L~ls~n~l---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 518 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSFGSKRLEN--LDLSRNQF---------SGAVPRKLGSLSELMQLKLSENKLSGEIPDE-- 518 (968)
T ss_pred CCCcEEECcCceeeeecCcccccccceE--EECcCCcc---------CCccChhhhhhhccCEEECcCCcceeeCChH--
Confidence 7788888887765544443211100000 00000000 0001113446889999999999877544432
Q ss_pred ccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccc
Q 003639 668 VAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPEL 747 (806)
Q Consensus 668 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 747 (806)
+..+++|++|+|++| +++...| ..+..+++|++|++++|.-...+ |.... .+++|+.|++++|+-.
T Consensus 519 ---~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~-------~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 519 ---LSSCKKLVSLDLSHN-QLSGQIP-ASFSEMPVLSQLDLSQNQLSGEI--PKNLG-------NVESLVQVNISHNHLH 584 (968)
T ss_pred ---HcCccCCCEEECCCC-cccccCC-hhHhCcccCCEEECCCCcccccC--ChhHh-------cCcccCEEeccCCcce
Confidence 568899999999885 6665533 56788999999999998543334 33322 5889999999999877
Q ss_pred cccCCCCCcCCCCCcCEEeEecCCCc
Q 003639 748 KCLYPGMHTSEWPALKLLDVSACDQV 773 (806)
Q Consensus 748 ~~l~~~~~~~~l~sL~~L~i~~C~~L 773 (806)
..+|... .+.++....+.+.+.+
T Consensus 585 ~~~p~~~---~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 585 GSLPSTG---AFLAINASAVAGNIDL 607 (968)
T ss_pred eeCCCcc---hhcccChhhhcCCccc
Confidence 7788652 3445555566666655
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-23 Score=255.37 Aligned_cols=373 Identities=20% Similarity=0.247 Sum_probs=253.7
Q ss_pred CChhhhcCCCceEEEeecCCCc-------cCCccccccc-CCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccCh
Q 003639 248 PCNFFTGMRKLRVVDFTRMQLL-------LLPSSIDLLV-NLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPE 318 (806)
Q Consensus 248 ~~~~~~~l~~Lr~L~L~~~~i~-------~lp~~l~~l~-~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~ 318 (806)
....|.++++|++|.+..+... .+|..+..++ +||+|.+.++.++. |..+ .+.+|++|++.++.+..+|.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 4556799999999999765321 3777777765 59999999999888 7666 67999999999999999999
Q ss_pred hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecC-CC
Q 003639 319 ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN-DN 397 (806)
Q Consensus 319 ~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~ 397 (806)
++..+++|+.|++++|..++.+|. ++.+++|++|++++|... ...+..++++++|+.|+++++. ..
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCCcC
Confidence 999999999999999888888885 889999999999888544 1233455666666666665432 22
Q ss_pred cCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCCcchhcccccccccCCCcEEE
Q 003639 398 VLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLH 477 (806)
Q Consensus 398 ~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~ 477 (806)
.+|.. + .+++|+.|++++|..++..+. ..++|++|+
T Consensus 696 ~Lp~~--------------------------------------i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~ 731 (1153)
T PLN03210 696 ILPTG--------------------------------------I-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLD 731 (1153)
T ss_pred ccCCc--------------------------------------C-CCCCCCEEeCCCCCCcccccc-----ccCCcCeee
Confidence 22211 1 244555566655544433321 123555555
Q ss_pred eccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCccc
Q 003639 478 VQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLE 557 (806)
Q Consensus 478 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~ 557 (806)
+.++. ++.++ ....+++|++|.+.++.... ++ ..+..+++ .....+++|+
T Consensus 732 L~~n~-i~~lP-------~~~~l~~L~~L~l~~~~~~~-l~--------------------~~~~~l~~-~~~~~~~sL~ 781 (1153)
T PLN03210 732 LDETA-IEEFP-------SNLRLENLDELILCEMKSEK-LW--------------------ERVQPLTP-LMTMLSPSLT 781 (1153)
T ss_pred cCCCc-ccccc-------ccccccccccccccccchhh-cc--------------------ccccccch-hhhhccccch
Confidence 55442 22221 11123344444333322110 00 01111111 1123467899
Q ss_pred EEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCccccccccccccccccccccc
Q 003639 558 RIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSA 637 (806)
Q Consensus 558 ~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (806)
.|++++|+.+..++ ..+..+++|+.|+|++|++++.+|..
T Consensus 782 ~L~Ls~n~~l~~lP----------~si~~L~~L~~L~Ls~C~~L~~LP~~------------------------------ 821 (1153)
T PLN03210 782 RLFLSDIPSLVELP----------SSIQNLHKLEHLEIENCINLETLPTG------------------------------ 821 (1153)
T ss_pred heeCCCCCCccccC----------hhhhCCCCCCEEECCCCCCcCeeCCC------------------------------
Confidence 99999999888776 45678999999999999999887752
Q ss_pred ccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccce
Q 003639 638 LFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQE 716 (806)
Q Consensus 638 ~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~ 716 (806)
..+++|+.|++++| .+..++. ..++|+.|++++ +.++.+| ..+..+++|+.|++++|++++.
T Consensus 822 -----~~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 822 -----INLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred -----CCccccCEEECCCCCccccccc---------cccccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCc
Confidence 15789999999999 7766543 237899999988 7898885 5678899999999999999998
Q ss_pred eeccccccCCCCCcccccccccccccccccccccCCCC-C----------cCCCCCcCEEeEecCCCce
Q 003639 717 IISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGM-H----------TSEWPALKLLDVSACDQVT 774 (806)
Q Consensus 717 i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~-~----------~~~l~sL~~L~i~~C~~L~ 774 (806)
+... .. .+++|+.|++++|++|+.++... + ...+|+...+.+.+|.++.
T Consensus 885 l~~~--~~-------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 885 VSLN--IS-------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cCcc--cc-------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 7432 11 58899999999999998664320 0 1234455666777887764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.5e-24 Score=218.37 Aligned_cols=177 Identities=15% Similarity=0.217 Sum_probs=125.6
Q ss_pred ccccccEEEEEeCCCCCCCCC--C--CCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccccccc
Q 003639 204 IALKECYAISLRGCSIHELPE--G--LECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLV 279 (806)
Q Consensus 204 ~~~~~lr~l~l~~~~~~~l~~--~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~ 279 (806)
..+.+.+.++.+.+.++.+.. . .-.+..++|++++| .+..+ ...+|.++.+|+.+++..|.++.+|...+..-
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnN-kl~~i--d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg 125 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNN-KLSHI--DFEFFYNLPNLQEVNLNKNELTRIPRFGHESG 125 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeecccc-ccccC--cHHHHhcCCcceeeeeccchhhhccccccccc
Confidence 345567888888887766532 1 12456777888877 34445 44566888888888888888888887777777
Q ss_pred CCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEe
Q 003639 280 NLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYM 356 (806)
Q Consensus 280 ~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l 356 (806)
||+.|+|.+|.|++ -+.+..+..||.|||+.|.|+.+|. ++..=.++++|++++|. ++.+..+.|..+.+|-.|.+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeec
Confidence 78888888888877 5677888888888888888887765 35555778888888776 77776666777777777777
Q ss_pred ecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecC
Q 003639 357 SNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKN 395 (806)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~ 395 (806)
+.|.++ .-....++++++|+.|++..|.
T Consensus 205 srNrit-----------tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 205 SRNRIT-----------TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred ccCccc-----------ccCHHHhhhcchhhhhhccccc
Confidence 777665 1223445556666666665444
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=9e-27 Score=228.51 Aligned_cols=456 Identities=19% Similarity=0.227 Sum_probs=281.3
Q ss_pred cccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEE
Q 003639 207 KECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 285 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~ 285 (806)
.-+..+.+++|+..++|+ ..++..+..|+++.|. ...+ |..+ ..+..|+.|+.++|.+..+|++++.+-.|..|+
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~l--p~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSEL--PEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-Hhhc--cHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 346677777777766665 3456677777777763 4555 6665 677777778888887777777777777788887
Q ss_pred ecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccccc
Q 003639 286 LVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 364 (806)
Q Consensus 286 L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 364 (806)
..+|++.. |++++.+.+|..|++.+|+++.+|+..-+++.|++|+...|- ++.+|++ +|.+.+|+.|++..|.+.
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~-- 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIR-- 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccc--
Confidence 77777777 777777777888888887777777776667788888777655 7777777 788888888877777665
Q ss_pred CCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccc
Q 003639 365 DEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGI 444 (806)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l 444 (806)
.+.+++.++.|++|.+..|.+..+|... +++| ..+..++++.+.....|+.+..+
T Consensus 220 -----------~lPef~gcs~L~Elh~g~N~i~~lpae~-~~~L-------------~~l~vLDLRdNklke~Pde~clL 274 (565)
T KOG0472|consen 220 -----------FLPEFPGCSLLKELHVGENQIEMLPAEH-LKHL-------------NSLLVLDLRDNKLKEVPDEICLL 274 (565)
T ss_pred -----------cCCCCCccHHHHHHHhcccHHHhhHHHH-hccc-------------ccceeeeccccccccCchHHHHh
Confidence 3335666666666666666665555543 2222 45556666666666667777777
Q ss_pred cceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecc-ccccccc-------
Q 003639 445 KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY-NLIKLER------- 516 (806)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~l~~------- 516 (806)
++|++|+++++ .+...+..+ +.+ .|+.|.+.|++-- .+-.. ....+.-.-|++|.-. .+..+..
T Consensus 275 rsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNPlr-TiRr~---ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 275 RSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNPLR-TIRRE---IISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred hhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCchH-HHHHH---HHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 77777777764 444444444 445 6666777666421 11000 0000000011111110 0000000
Q ss_pred ----ccccccccCCCCCccEEEEecCCCCCcccchhhhccc--CcccEEEeeccccccchhcccCccccccccccccccc
Q 003639 517 ----ICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL--PRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQL 590 (806)
Q Consensus 517 ----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l--~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L 590 (806)
..........+.+.+.|+++. .+++.+|.. .+..- .-...++++... +.++| ..+..+..+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~VnfskNq-L~elP----------k~L~~lkel 413 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSKNQ-LCELP----------KRLVELKEL 413 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEecccch-Hhhhh----------hhhHHHHHH
Confidence 000111123455678888887 778877653 22221 123445555532 44444 233333333
Q ss_pred ceEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccc
Q 003639 591 RTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAM 670 (806)
Q Consensus 591 ~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~ 670 (806)
.+.-+....++..++. .+..+++|..|++++|-+-++|.+.
T Consensus 414 vT~l~lsnn~isfv~~----------------------------------~l~~l~kLt~L~L~NN~Ln~LP~e~----- 454 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPL----------------------------------ELSQLQKLTFLDLSNNLLNDLPEEM----- 454 (565)
T ss_pred HHHHHhhcCccccchH----------------------------------HHHhhhcceeeecccchhhhcchhh-----
Confidence 3332333333332221 3446788888999988776766543
Q ss_pred cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL 750 (806)
Q Consensus 671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 750 (806)
+.+..|++|+|+. ++.+.+| .....+.-||.+-+++ +++.++.. .++. ....|..|++.+ +.+..+
T Consensus 455 -~~lv~Lq~LnlS~-NrFr~lP--~~~y~lq~lEtllas~-nqi~~vd~-~~l~-------nm~nL~tLDL~n-Ndlq~I 520 (565)
T KOG0472|consen 455 -GSLVRLQTLNLSF-NRFRMLP--ECLYELQTLETLLASN-NQIGSVDP-SGLK-------NMRNLTTLDLQN-NDLQQI 520 (565)
T ss_pred -hhhhhhheecccc-cccccch--HHHhhHHHHHHHHhcc-ccccccCh-HHhh-------hhhhcceeccCC-CchhhC
Confidence 4567799999977 6787775 5666667777777776 57777632 2333 578888999977 688899
Q ss_pred CCCCCcCCCCCcCEEeEecCC
Q 003639 751 YPGMHTSEWPALKLLDVSACD 771 (806)
Q Consensus 751 ~~~~~~~~l~sL~~L~i~~C~ 771 (806)
|++ ++++++|++|++.|.|
T Consensus 521 Pp~--LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 521 PPI--LGNMTNLRHLELDGNP 539 (565)
T ss_pred Chh--hccccceeEEEecCCc
Confidence 988 6788999999998887
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-23 Score=214.41 Aligned_cols=365 Identities=17% Similarity=0.215 Sum_probs=205.7
Q ss_pred CcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639 281 LQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358 (806)
Q Consensus 281 L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 358 (806)
-++|++++|.+.. +..|.++++|+.+++..|.++.+|...+...+|+.|++.+|. +.++..+.+.-++.||.|+++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhh
Confidence 3457777777666 566777777777777777777777666666667777777755 6666655577777777777777
Q ss_pred CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccc
Q 003639 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICS 438 (806)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~ 438 (806)
|.+. ......+.+-.++++|++++|.++++..+.+
T Consensus 159 N~is-----------~i~~~sfp~~~ni~~L~La~N~It~l~~~~F---------------------------------- 193 (873)
T KOG4194|consen 159 NLIS-----------EIPKPSFPAKVNIKKLNLASNRITTLETGHF---------------------------------- 193 (873)
T ss_pred chhh-----------cccCCCCCCCCCceEEeeccccccccccccc----------------------------------
Confidence 6655 1222344444567777777666665544321
Q ss_pred cccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccc
Q 003639 439 KKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERIC 518 (806)
Q Consensus 439 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 518 (806)
..+.+|..|.|+++...+-....+ ..+|+|+.|++..+. ++.+ . +....++++|+.|.+... ++..+.
T Consensus 194 ---~~lnsL~tlkLsrNrittLp~r~F--k~L~~L~~LdLnrN~-iriv----e-~ltFqgL~Sl~nlklqrN-~I~kL~ 261 (873)
T KOG4194|consen 194 ---DSLNSLLTLKLSRNRITTLPQRSF--KRLPKLESLDLNRNR-IRIV----E-GLTFQGLPSLQNLKLQRN-DISKLD 261 (873)
T ss_pred ---cccchheeeecccCcccccCHHHh--hhcchhhhhhccccc-eeee----h-hhhhcCchhhhhhhhhhc-Cccccc
Confidence 112233333333321111111111 234444444443331 1111 0 001122333333333221 111111
Q ss_pred ccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCC
Q 003639 519 QDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSL 598 (806)
Q Consensus 519 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c 598 (806)
.+. +..+.++++|+++. +++..+-. +.+.++++|+.|++++.
T Consensus 262 DG~--Fy~l~kme~l~L~~-N~l~~vn~-----------------------------------g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 262 DGA--FYGLEKMEHLNLET-NRLQAVNE-----------------------------------GWLFGLTSLEQLDLSYN 303 (873)
T ss_pred Ccc--eeeecccceeeccc-chhhhhhc-----------------------------------ccccccchhhhhccchh
Confidence 111 22344555555554 44443321 23345555555555554
Q ss_pred CCccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCcc
Q 003639 599 PELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLT 678 (806)
Q Consensus 599 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~ 678 (806)
. +..+. .+.....++|++|++++|.++.+.++. |..+..|+
T Consensus 304 a-I~rih---------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~s-----f~~L~~Le 344 (873)
T KOG4194|consen 304 A-IQRIH---------------------------------IDSWSFTQKLKELDLSSNRITRLDEGS-----FRVLSQLE 344 (873)
T ss_pred h-hheee---------------------------------cchhhhcccceeEeccccccccCChhH-----HHHHHHhh
Confidence 2 11111 113446788889999988888876654 66888899
Q ss_pred EEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCCCCCcCC
Q 003639 679 RLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSE 758 (806)
Q Consensus 679 ~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 758 (806)
+|+++. +.++.+ ....+..+.+|++|++++ +.+...+. + ..+.+. .+++|++|.+.+ ++|++++... ..+
T Consensus 345 ~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~-N~ls~~IE-D-aa~~f~---gl~~LrkL~l~g-Nqlk~I~krA-fsg 414 (873)
T KOG4194|consen 345 ELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRS-NELSWCIE-D-AAVAFN---GLPSLRKLRLTG-NQLKSIPKRA-FSG 414 (873)
T ss_pred hhcccc-cchHHH-HhhHHHHhhhhhhhcCcC-CeEEEEEe-c-chhhhc---cchhhhheeecC-ceeeecchhh-hcc
Confidence 999988 788887 567778888999999888 45654432 1 111111 388899999988 7899998774 357
Q ss_pred CCCcCEEeEecCCCceeecccchhhcccccccCC
Q 003639 759 WPALKLLDVSACDQVTVFDSELFSFFKSSEEDKP 792 (806)
Q Consensus 759 l~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~ 792 (806)
+++|++|++.+.+ +.++-.+-+..+ +|+++..
T Consensus 415 l~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 415 LEALEHLDLGDNA-IASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred CcccceecCCCCc-ceeecccccccc-hhhhhhh
Confidence 8899999995555 666544433444 6666665
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=5.6e-25 Score=237.81 Aligned_cols=468 Identities=21% Similarity=0.233 Sum_probs=251.4
Q ss_pred EEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcC
Q 003639 212 ISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM 290 (806)
Q Consensus 212 l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 290 (806)
++++.+..+.+|. ...-..+..|.+..|.. ... |-.+..+.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~--pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSL-LSR--PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhcccccc-ccC--chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh
Confidence 4455566666665 22333477777777642 223 6666677777999999999999999999999999999999999
Q ss_pred CCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCC
Q 003639 291 LDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPN 369 (806)
Q Consensus 291 l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 369 (806)
+.. |.+++++++|++|+|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+..++| ..
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N-~~------- 149 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN-EK------- 149 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc-hh-------
Confidence 988 999999999999999999999999999999999999999976 7888875 888999998888877 21
Q ss_pred chhhhccccccCCCCCCcEEEEEecCC-CcCCccccccccceEEEeeeecCccccceEEEeecCccccccccccccccee
Q 003639 370 SERINARLDELMHLPRLATLEVHVKND-NVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVE 448 (806)
Q Consensus 370 ~~~~~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~ 448 (806)
+..++... ++.+++..+.. ..++.++ .+++. .++++-+... ...+..+++|+
T Consensus 150 -------~~~lg~~~-ik~~~l~~n~l~~~~~~~i--~~l~~---------------~ldLr~N~~~--~~dls~~~~l~ 202 (1081)
T KOG0618|consen 150 -------IQRLGQTS-IKKLDLRLNVLGGSFLIDI--YNLTH---------------QLDLRYNEME--VLDLSNLANLE 202 (1081)
T ss_pred -------hhhhcccc-chhhhhhhhhcccchhcch--hhhhe---------------eeecccchhh--hhhhhhccchh
Confidence 12222222 44455544332 1222221 11111 1222111111 11112233333
Q ss_pred eeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccCCCC
Q 003639 449 YLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFN 528 (806)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 528 (806)
.+....+. +..+. ..-++|+.|+...|+-.+.. ....-.+|+.++++.. ++..++.. ...++
T Consensus 203 ~l~c~rn~-ls~l~-----~~g~~l~~L~a~~n~l~~~~--------~~p~p~nl~~~dis~n-~l~~lp~w---i~~~~ 264 (1081)
T KOG0618|consen 203 VLHCERNQ-LSELE-----ISGPSLTALYADHNPLTTLD--------VHPVPLNLQYLDISHN-NLSNLPEW---IGACA 264 (1081)
T ss_pred hhhhhhcc-cceEE-----ecCcchheeeeccCcceeec--------cccccccceeeecchh-hhhcchHH---HHhcc
Confidence 33332211 11110 12345555555555432111 1112234555555442 23333211 33455
Q ss_pred CccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCC
Q 003639 529 ELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGV 608 (806)
Q Consensus 529 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~ 608 (806)
+|+.+.+.+ +.++.++. -+....+|+.|.+..|. ++.++ .....+.+|++|++... ++.++|...
T Consensus 265 nle~l~~n~-N~l~~lp~--ri~~~~~L~~l~~~~ne-l~yip----------~~le~~~sL~tLdL~~N-~L~~lp~~~ 329 (1081)
T KOG0618|consen 265 NLEALNANH-NRLVALPL--RISRITSLVSLSAAYNE-LEYIP----------PFLEGLKSLRTLDLQSN-NLPSLPDNF 329 (1081)
T ss_pred cceEecccc-hhHHhhHH--HHhhhhhHHHHHhhhhh-hhhCC----------Ccccccceeeeeeehhc-cccccchHH
Confidence 555555555 44444432 22233444444444433 33333 34455677777777665 455554421
Q ss_pred cccccc-cCcccccccc----cccccc-----------cccccccccccccccCCcceeeecceeeeecCCCCCcccccc
Q 003639 609 KKNRQA-QGMHETCSNE----ISSLED-----------KLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFL 672 (806)
Q Consensus 609 ~~~~~~-~~~~~~~~~~----~~~~~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~ 672 (806)
...... ....+..... .+.++. .-.-....++.+..+++|+.|++++|.+..++... +.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~-----~~ 404 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-----LR 404 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH-----Hh
Confidence 111000 0000000000 000000 00001113334445556666666666555554433 33
Q ss_pred cCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCC
Q 003639 673 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYP 752 (806)
Q Consensus 673 ~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 752 (806)
++..|+.|++++ ++|+.+| ..+..+..|++|...+ +.|..+ |+...++.|+.++++ |++|+.+-.
T Consensus 405 kle~LeeL~LSG-NkL~~Lp--~tva~~~~L~tL~ahs-N~l~~f----------Pe~~~l~qL~~lDlS-~N~L~~~~l 469 (1081)
T KOG0618|consen 405 KLEELEELNLSG-NKLTTLP--DTVANLGRLHTLRAHS-NQLLSF----------PELAQLPQLKVLDLS-CNNLSEVTL 469 (1081)
T ss_pred chHHhHHHhccc-chhhhhh--HHHHhhhhhHHHhhcC-Cceeec----------hhhhhcCcceEEecc-cchhhhhhh
Confidence 555556666655 5565553 3344555555555554 344433 333358888888885 577765533
Q ss_pred CCCcCCCCCcCEEeEecCCCc
Q 003639 753 GMHTSEWPALKLLDVSACDQV 773 (806)
Q Consensus 753 ~~~~~~l~sL~~L~i~~C~~L 773 (806)
... .-.|.|++|+++|.+.+
T Consensus 470 ~~~-~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 470 PEA-LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhh-CCCcccceeeccCCccc
Confidence 211 11268888888887764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-25 Score=220.75 Aligned_cols=480 Identities=21% Similarity=0.206 Sum_probs=320.9
Q ss_pred ccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEe
Q 003639 208 ECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL 286 (806)
Q Consensus 208 ~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L 286 (806)
.+..+.+++|.++.+.+ ..++..+.+|.+..|. .... |.++ +.+..+..|+.++|++..+|+.++.+..|+.|+.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~l--p~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LSQL--PAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccch-hhhC--CHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 46778888888876654 5678899999999885 4445 7666 8999999999999999999999999999999999
Q ss_pred cCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639 287 VECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 365 (806)
Q Consensus 287 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 365 (806)
+++.+.+ +++|+.+..|..|+..+|++..+|.+++++.+|..|++.++. ++.+|+..+ +++.|++|+...|...
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhh---
Confidence 9999999 999999999999999999999999999999999999999976 899998844 4999999998766554
Q ss_pred CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccc-cc
Q 003639 366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQ-GI 444 (806)
Q Consensus 366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~-~l 444 (806)
..+.+++.+.+|..|++..|.+..+|..-.+ ..++.+++..+.....|.... .+
T Consensus 197 ---------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc----------------s~L~Elh~g~N~i~~lpae~~~~L 251 (565)
T KOG0472|consen 197 ---------TLPPELGGLESLELLYLRRNKIRFLPEFPGC----------------SLLKELHVGENQIEMLPAEHLKHL 251 (565)
T ss_pred ---------cCChhhcchhhhHHHHhhhcccccCCCCCcc----------------HHHHHHHhcccHHHhhHHHHhccc
Confidence 6778999999999999999998888743212 334444444444334444443 78
Q ss_pred cceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccccccccc
Q 003639 445 KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV 524 (806)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 524 (806)
+++..|+++++ .+++.+..+ .-+.+|.+|+++++. +..+ .+..+.+ .|+.|.+.+.+ ++.+.......
T Consensus 252 ~~l~vLDLRdN-klke~Pde~--clLrsL~rLDlSNN~-is~L------p~sLgnl-hL~~L~leGNP-lrTiRr~ii~~ 319 (565)
T KOG0472|consen 252 NSLLVLDLRDN-KLKEVPDEI--CLLRSLERLDLSNND-ISSL------PYSLGNL-HLKFLALEGNP-LRTIRREIISK 319 (565)
T ss_pred ccceeeecccc-ccccCchHH--HHhhhhhhhcccCCc-cccC------Ccccccc-eeeehhhcCCc-hHHHHHHHHcc
Confidence 88999999884 566666654 447789999998873 3332 2245555 77788777754 33332211111
Q ss_pred CCCCCccEEEE-ecCCCCCcc----------c--chhhhcccCcccEEEeeccccccchhcccCcccccccccccccccc
Q 003639 525 QSFNELKTIRV-EHCDQLSNI----------F--LLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLR 591 (806)
Q Consensus 525 ~~~~~L~~L~l-~~c~~l~~l----------~--~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~ 591 (806)
+.-.-|++|.= .-|.++..- + +.......-+.+.|++++ ..++.+|...... ..-.-..
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea-------~~~~~Vt 391 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEA-------AKSEIVT 391 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHH-------hhhcceE
Confidence 11111222210 011122110 0 011223455677777776 3455555311100 0001123
Q ss_pred eEecCCCCCccccccCCcccccccCcccccccccccccccccccccccccccccCCcc-eeeecceeeeecCCCCCcccc
Q 003639 592 TLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLE-VLEMNKVNIEKIWPNQLPVAM 670 (806)
Q Consensus 592 ~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~l~~i~~~~~~~~~ 670 (806)
..+++.. ++..+|.. ...+..+. .+.++++.+.- .+. .
T Consensus 392 ~VnfskN-qL~elPk~----------------------------------L~~lkelvT~l~lsnn~isf-v~~-----~ 430 (565)
T KOG0472|consen 392 SVNFSKN-QLCELPKR----------------------------------LVELKELVTDLVLSNNKISF-VPL-----E 430 (565)
T ss_pred EEecccc-hHhhhhhh----------------------------------hHHHHHHHHHHHhhcCcccc-chH-----H
Confidence 3444443 23333321 11222232 23344443332 222 2
Q ss_pred cccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCccccccccccccccccccccc
Q 003639 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL 750 (806)
Q Consensus 671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 750 (806)
+..+++|..|++++ +-|.++| ..+..+..|+.|+|+.. .+..+ |+... .+..|+.+..++ .++..+
T Consensus 431 l~~l~kLt~L~L~N-N~Ln~LP--~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y-------~lq~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSN-NLLNDLP--EEMGSLVRLQTLNLSFN-RFRML--PECLY-------ELQTLETLLASN-NQIGSV 496 (565)
T ss_pred HHhhhcceeeeccc-chhhhcc--hhhhhhhhhheeccccc-ccccc--hHHHh-------hHHHHHHHHhcc-cccccc
Confidence 45789999999988 7888886 45577888999999994 66655 33211 244455555554 688888
Q ss_pred CCCCCcCCCCCcCEEeEecCCCceeecccchhhcccccccCCCC-CCCCC
Q 003639 751 YPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPDI-PARQP 799 (806)
Q Consensus 751 ~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~~~-~~~~~ 799 (806)
+... +.++..|..|++ +.+.+..+|..+ +++++|+++.+++ +-++|
T Consensus 497 d~~~-l~nm~nL~tLDL-~nNdlq~IPp~L-gnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 497 DPSG-LKNMRNLTTLDL-QNNDLQQIPPIL-GNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred ChHH-hhhhhhcceecc-CCCchhhCChhh-ccccceeEEEecCCccCCC
Confidence 8762 457789999999 666799999977 8999999998875 44454
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=7.8e-25 Score=225.79 Aligned_cols=176 Identities=21% Similarity=0.285 Sum_probs=132.9
Q ss_pred cccccEEEEEeCCCC--CCCCCCC-CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCC
Q 003639 205 ALKECYAISLRGCSI--HELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNL 281 (806)
Q Consensus 205 ~~~~lr~l~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L 281 (806)
+++-+|.+++++|.+ ..+|... .++.++-|.+... ....+ |..+ +.+.+|.+|++.+|++..+...++.|+.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~v--PeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQV--PEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhC--hHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 455677788888776 3566533 4677777777665 35556 7666 78888888888888888877778888888
Q ss_pred cEEEecCcCCCC---chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639 282 QTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358 (806)
Q Consensus 282 ~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 358 (806)
|.+.++.|+++. |..|.+|..|.+|||++|.+++.|.++.+-+++-.|++++|. +.++|...+.+|+.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 888888888765 778888888888888888888888888888888888888865 8888887778888888888887
Q ss_pred CcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639 359 CFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397 (806)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 397 (806)
|.+. ..+..++.+.+|++|.+++|...
T Consensus 160 NrLe------------~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 160 NRLE------------MLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred chhh------------hcCHHHHHHhhhhhhhcCCChhh
Confidence 7664 45566777778888887766543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-24 Score=231.64 Aligned_cols=433 Identities=20% Similarity=0.198 Sum_probs=243.8
Q ss_pred cEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639 209 CYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287 (806)
Q Consensus 209 lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 287 (806)
+++|++++|.+..+|. ....++|+.|.++.| .+..+ |.+. .++++|++|.|.+|....+|.++..+++|++|+++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~v--p~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSV--PSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchh-hHhhC--chhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 4555555555544443 233445555555544 23333 4332 44555555555555555555555555555555555
Q ss_pred CcCCCC-chhhcCCCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639 288 ECMLDD-IAIIGKLKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 365 (806)
Q Consensus 288 ~~~l~~-~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 365 (806)
+|.+.. |..+..+..+..++.++| .+..++.. . .+++++..+.....++.+ +..++. .|++..|.+.
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME--- 191 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---
Confidence 555444 555555555555555554 22222221 1 444444444433344443 444444 4666555432
Q ss_pred CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeee------ecCccccceEEEeecCccccccc
Q 003639 366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALF------AIDDHETMRTLKLKLNSVSICSK 439 (806)
Q Consensus 366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~------~~~~~~~l~~l~l~~~~~~~~~~ 439 (806)
...+..+.+|+.+....+....+... -.+++.|..+.+ ....+.+++.++++.+.....|.
T Consensus 192 -----------~~dls~~~~l~~l~c~rn~ls~l~~~--g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~ 258 (1081)
T KOG0618|consen 192 -----------VLDLSNLANLEVLHCERNQLSELEIS--GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE 258 (1081)
T ss_pred -----------hhhhhhccchhhhhhhhcccceEEec--CcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence 23444555555554444443322111 223333332211 11223567777777777777778
Q ss_pred ccccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccc
Q 003639 440 KLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 519 (806)
Q Consensus 440 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 519 (806)
|+..+.+|+.+...++.. ..++..+ ....+|+.|.+..| .+++++. ....+.+|++|++... ++...+.
T Consensus 259 wi~~~~nle~l~~n~N~l-~~lp~ri--~~~~~L~~l~~~~n-el~yip~------~le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRL-VALPLRI--SRITSLVSLSAAYN-ELEYIPP------FLEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred HHHhcccceEecccchhH-HhhHHHH--hhhhhHHHHHhhhh-hhhhCCC------cccccceeeeeeehhc-cccccch
Confidence 888888888888776544 2332222 23556777777666 3444421 3445677777777663 3444433
Q ss_pred cccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCC
Q 003639 520 DRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLP 599 (806)
Q Consensus 520 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 599 (806)
..+. ..-..|+.|..+. +++...+. ..-..++.|+.|.+.+..--...+ .-+.+++.||.|++++.
T Consensus 328 ~~l~-v~~~~l~~ln~s~-n~l~~lp~-~~e~~~~~Lq~LylanN~Ltd~c~----------p~l~~~~hLKVLhLsyN- 393 (1081)
T KOG0618|consen 328 NFLA-VLNASLNTLNVSS-NKLSTLPS-YEENNHAALQELYLANNHLTDSCF----------PVLVNFKHLKVLHLSYN- 393 (1081)
T ss_pred HHHh-hhhHHHHHHhhhh-cccccccc-ccchhhHHHHHHHHhcCcccccch----------hhhccccceeeeeeccc-
Confidence 2111 0011244444443 55555542 233456677777776654322222 24668899999999997
Q ss_pred CccccccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccE
Q 003639 600 ELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTR 679 (806)
Q Consensus 600 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~ 679 (806)
.|.++|.. ....+..|++|++++|+++.++.. ...+..|++
T Consensus 394 rL~~fpas---------------------------------~~~kle~LeeL~LSGNkL~~Lp~t------va~~~~L~t 434 (1081)
T KOG0618|consen 394 RLNSFPAS---------------------------------KLRKLEELEELNLSGNKLTTLPDT------VANLGRLHT 434 (1081)
T ss_pred ccccCCHH---------------------------------HHhchHHhHHHhcccchhhhhhHH------HHhhhhhHH
Confidence 46665542 344788999999999999998753 357899999
Q ss_pred EEEecCCCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccc-cccccccccccccc
Q 003639 680 LILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVF-LQVTTLILLGLPEL 747 (806)
Q Consensus 680 L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L 747 (806)
|...+ ++|...| .+..++.|+.+|++. ++|..+..++. .+ |.|+.|++++...+
T Consensus 435 L~ahs-N~l~~fP---e~~~l~qL~~lDlS~-N~L~~~~l~~~---------~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 435 LRAHS-NQLLSFP---ELAQLPQLKVLDLSC-NNLSEVTLPEA---------LPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhhcC-Cceeech---hhhhcCcceEEeccc-chhhhhhhhhh---------CCCcccceeeccCCccc
Confidence 99977 7888884 467899999999976 78988765553 34 89999999987653
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=6.6e-24 Score=219.00 Aligned_cols=369 Identities=19% Similarity=0.230 Sum_probs=224.5
Q ss_pred CCCccEEEecCCCCc-ccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccce
Q 003639 228 CPRLEFLHINPKDSL-FDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI 305 (806)
Q Consensus 228 ~~~Lr~L~l~~~~~~-~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~ 305 (806)
++-.|-.++++|... ..+ |.+. ..+..++.|.|..+.+..+|+.++.|.+|++|.+.+|++.. -..++.|+.||.
T Consensus 6 LpFVrGvDfsgNDFsg~~F--P~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRF--PHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcC--chhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 456677788888765 344 6665 77888888888888888888888888888888888888777 677788888888
Q ss_pred EeccCCCCc--ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCC
Q 003639 306 LSFWGSGIV--KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHL 383 (806)
Q Consensus 306 L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l 383 (806)
++++.|+++ .+|..|-+|..|..|++++|. ++.+|.+ +..-+++-+|++++|.+... .-.-+.++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetI-----------Pn~lfinL 149 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETI-----------PNSLFINL 149 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccC-----------CchHHHhh
Confidence 888888666 678888888888888888876 8888887 78888888888887766510 11223455
Q ss_pred CCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccccccceeeeeccccCCcchhcc
Q 003639 384 PRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQGIKDVEYLCLEKLQDVKNVLF 463 (806)
Q Consensus 384 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 463 (806)
..|-.|+++.|....+|+.+ .-+..|+.|.|++++..
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~--------------------------------------RRL~~LqtL~Ls~NPL~----- 186 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQI--------------------------------------RRLSMLQTLKLSNNPLN----- 186 (1255)
T ss_pred HhHhhhccccchhhhcCHHH--------------------------------------HHHhhhhhhhcCCChhh-----
Confidence 55666666666665555442 12334445555543211
Q ss_pred cccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccc-ccccccccccccCCCCCccEEEEecCCCCC
Q 003639 464 DLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-KLERICQDRLSVQSFNELKTIRVEHCDQLS 542 (806)
Q Consensus 464 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 542 (806)
.+....+|+++.|.+-.+ ++-. .+..+| .....+.+|..++++. +++.
T Consensus 187 hfQLrQLPsmtsL~vLhm---------------------------s~TqRTl~N~P---tsld~l~NL~dvDlS~-N~Lp 235 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHM---------------------------SNTQRTLDNIP---TSLDDLHNLRDVDLSE-NNLP 235 (1255)
T ss_pred HHHHhcCccchhhhhhhc---------------------------ccccchhhcCC---Cchhhhhhhhhccccc-cCCC
Confidence 111122333322222222 2111 011111 1244566777777765 6666
Q ss_pred cccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccccCCcccccccCcccccc
Q 003639 543 NIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCS 622 (806)
Q Consensus 543 ~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~~~~~~~~~~~~~~~~~~ 622 (806)
.+|. .+-.+++|+.|++++.. ++++.+
T Consensus 236 ~vPe--cly~l~~LrrLNLS~N~-iteL~~-------------------------------------------------- 262 (1255)
T KOG0444|consen 236 IVPE--CLYKLRNLRRLNLSGNK-ITELNM-------------------------------------------------- 262 (1255)
T ss_pred cchH--HHhhhhhhheeccCcCc-eeeeec--------------------------------------------------
Confidence 6643 23455666666666533 332221
Q ss_pred cccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcc
Q 003639 623 NEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEH 702 (806)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~ 702 (806)
......+|++|+++.|+++.+|... ..+++|+.|++.+ ++|+.-..+++++.+..
T Consensus 263 ------------------~~~~W~~lEtLNlSrNQLt~LP~av------cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 263 ------------------TEGEWENLETLNLSRNQLTVLPDAV------CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred ------------------cHHHHhhhhhhccccchhccchHHH------hhhHHHHHHHhcc-CcccccCCccchhhhhh
Confidence 1113345666666666666655432 3556666666655 55554333466677777
Q ss_pred cceEEEecccccceeeccccccCCCCCcccccccccccccccccccccCCCCCcCCCCCcCEEeEecCCCceeec
Q 003639 703 LQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 777 (806)
Q Consensus 703 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp 777 (806)
|+++...+ +.|+-+ |+++. .++.|++|.+ +|+.|.++|.+.| -++-|+.|+++..|+|..=|
T Consensus 318 Levf~aan-N~LElV--PEglc-------RC~kL~kL~L-~~NrLiTLPeaIH--lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 318 LEVFHAAN-NKLELV--PEGLC-------RCVKLQKLKL-DHNRLITLPEAIH--LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hHHHHhhc-cccccC--chhhh-------hhHHHHHhcc-cccceeechhhhh--hcCCcceeeccCCcCccCCC
Confidence 77777766 456644 55543 5677777777 3566777777644 35677777777777765444
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.79 E-value=4.9e-20 Score=191.49 Aligned_cols=132 Identities=33% Similarity=0.507 Sum_probs=105.4
Q ss_pred cceeeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHccCChhHHHHHHHHhcCC-ChhHHHHHHHHhcCCCCC
Q 003639 4 QKNFSIDILNEEEAWRLFKLVADDH--VENREFKSTATEVAQACKGLPIALTTIARALRNK-SVPEWKSALQELRMPSEV 80 (806)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~-~~~~W~~~l~~~~~~~~~ 80 (806)
...|++++|+.+||++||++.|+.. ...+..++++++|+++|+|+||||+++|++|+.+ +..+|+++++++.. ...
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~ 227 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLR 227 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4689999999999999999999432 2456778899999999999999999999999766 78999999988751 111
Q ss_pred CCCCCchhhHhHHHHhhccCCchhHHHHHHHHhhcC--CCCChhHHHHHhhhccccccc
Q 003639 81 NFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSLLG--NSICTSYLFQCCMGLGILQKV 137 (806)
Q Consensus 81 ~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~fp--~~i~~~~li~~wiaeG~i~~~ 137 (806)
+..+....+..++.+||+.||++ +|+||+|||+|| +.|+++.|+++|+|||||...
T Consensus 228 ~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 228 ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 12224567999999999999998 899999999999 789999999999999999753
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.9e-18 Score=150.54 Aligned_cols=166 Identities=25% Similarity=0.347 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhc
Q 003639 220 HELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIG 298 (806)
Q Consensus 220 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~ 298 (806)
..++..++++++..|.++.|. .+.+ |..+ ..+++|.+|++.+|+++++|.+++.++.||.|++..|++.. |..||
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK-l~~v--ppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK-LTVV--PPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcccCc-eeec--CCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345556666777777777763 4555 6665 78888888888888888888888888888888888888777 88888
Q ss_pred CCCccceEeccCCCCc--ccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhcc
Q 003639 299 KLKNLEILSFWGSGIV--KLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINAR 376 (806)
Q Consensus 299 ~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 376 (806)
.++-|+.||+.+|++. .+|..|-.|+.|+.|++++|. ++.+|++ +++|++||.|.+..+... ..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hC
Confidence 8888888888888766 688888888888888888865 7788887 888888888888877665 56
Q ss_pred ccccCCCCCCcEEEEEecCCCcCCccc
Q 003639 377 LDELMHLPRLATLEVHVKNDNVLPEGF 403 (806)
Q Consensus 377 ~~~L~~l~~L~~L~l~~~~~~~~~~~~ 403 (806)
+.+++.+..|++|.|.+|....+|+.+
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 678888888888888888888887764
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=3.2e-17 Score=142.94 Aligned_cols=156 Identities=22% Similarity=0.323 Sum_probs=142.5
Q ss_pred CccccccccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccccccc
Q 003639 201 PDDIALKECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLV 279 (806)
Q Consensus 201 ~~~~~~~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~ 279 (806)
++.-.++++.++.+++|++..+|+ ..++.+|++|.++.| .+.++ |.++ +.+++||.|+++-|.+..+|..|+.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~l--p~~i-ssl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSI-SSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhh-hhchhhhheecchhhhhcCccccCCCc
Confidence 334446789999999999999987 457999999999977 57778 8887 999999999999999999999999999
Q ss_pred CCcEEEecCcCCCC---chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEe
Q 003639 280 NLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYM 356 (806)
Q Consensus 280 ~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l 356 (806)
-|++||+.+|++.+ |..|..|+-|+.|+++.|.+.-+|..++++++||.|.+..|. +-++|.+ ++.|+.|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhc
Confidence 99999999999876 899999999999999999999999999999999999999976 8899998 999999999999
Q ss_pred ecCccc
Q 003639 357 SNCFVE 362 (806)
Q Consensus 357 ~~~~~~ 362 (806)
.++...
T Consensus 181 qgnrl~ 186 (264)
T KOG0617|consen 181 QGNRLT 186 (264)
T ss_pred ccceee
Confidence 999876
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=6.8e-13 Score=149.92 Aligned_cols=156 Identities=23% Similarity=0.260 Sum_probs=101.6
Q ss_pred cEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecC
Q 003639 209 CYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVE 288 (806)
Q Consensus 209 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 288 (806)
-..|+++.+.+..+|+... ++|+.|.+..|. +..+ |. .+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~-Lt~L--P~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNN-LTSL--PA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCc-CCCC--CC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 4567777777777776332 467888877763 4445 53 356788888888888777753 45777888888
Q ss_pred cCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCCC
Q 003639 289 CMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEG 367 (806)
Q Consensus 289 ~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 367 (806)
|.++. |.. ..+|+.|++++|+++.+|.. +++|++|++++|. ++.+|.. ..+|+.|++++|.+..
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~---- 336 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS---- 336 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc----
Confidence 87766 432 25677788888887777753 4678888888765 6666642 2356667777766541
Q ss_pred CCchhhhccccccCCCCCCcEEEEEecCCCcCCc
Q 003639 368 PNSERINARLDELMHLPRLATLEVHVKNDNVLPE 401 (806)
Q Consensus 368 ~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 401 (806)
+..+ ..+|+.|++++|....+|.
T Consensus 337 ---------LP~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 337 ---------LPTL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred ---------cccc--ccccceEecCCCccCCCCC
Confidence 1111 1367777777777666554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.8e-13 Score=154.04 Aligned_cols=138 Identities=16% Similarity=0.269 Sum_probs=81.0
Q ss_pred ccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639 208 ECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287 (806)
Q Consensus 208 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 287 (806)
+...+.+.++++..+|... .+.|+.|++.+|. +..+ |..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~-LtsL--P~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNE-LKSL--PENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCC-CCcC--Chhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 4566777777766666532 2456667766663 4445 55442 366677777776666665443 356667776
Q ss_pred CcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc
Q 003639 288 ECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 362 (806)
Q Consensus 288 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 362 (806)
+|.+.. |..+. .+|++|++++|.++.+|..+. .+|++|++++|. ++.+|.. +. .+|++|++++|.+.
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 666666 54443 356666666666666665543 366666666654 5555543 22 34556666555443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=1.9e-12 Score=146.27 Aligned_cols=174 Identities=21% Similarity=0.173 Sum_probs=130.8
Q ss_pred eEEecCcccCCCCccccccccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCC
Q 003639 189 AVLVRNEDVWEWPDDIALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQL 268 (806)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i 268 (806)
...+.+......|. .++.+++.|++..|+++.+|.. .++|++|++.+| .+..+ |. ..++|+.|++++|.+
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsL--P~----lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSL--PV----LPPGLLELSIFSNPL 274 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcc--cC----cccccceeeccCCch
Confidence 34444444554443 4567899999999999999864 589999999998 45566 64 246899999999999
Q ss_pred ccCCcccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhc
Q 003639 269 LLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR 347 (806)
Q Consensus 269 ~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (806)
..+|.. ..+|+.|++++|.++. |. .+++|++|++++|.++.+|... .+|+.|++++|. +..+|. +
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l-- 340 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L-- 340 (788)
T ss_pred hhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--
Confidence 988864 3678899999999988 54 3578999999999999988633 467788898876 777775 2
Q ss_pred CCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCc
Q 003639 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPE 401 (806)
Q Consensus 348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~ 401 (806)
..+|++|++++|.+.. +..+ ..+|+.|++++|....+|.
T Consensus 341 p~~Lq~LdLS~N~Ls~-------------LP~l--p~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-------------LPTL--PSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred ccccceEecCCCccCC-------------CCCC--CcccceehhhccccccCcc
Confidence 2589999999998761 1111 2467788888777766654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.43 E-value=8.2e-15 Score=144.93 Aligned_cols=141 Identities=22% Similarity=0.256 Sum_probs=78.9
Q ss_pred EEecCcccCCCCccccccccEEEEEeCCCCCCCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeec-C
Q 003639 190 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTR-M 266 (806)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~ 266 (806)
+...+.+..++| .+++.+...+.+..|.|..+|+ |..+++||.|+++.|. +..| ....|++++.|-.|-+.+ |
T Consensus 51 VdCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I--~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFI--APDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhc--ChHhhhhhHhhhHHHhhcCC
Confidence 333444444444 3567777777777777777764 4456666666666553 3333 333345555555554444 5
Q ss_pred CCccCCc-ccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCC
Q 003639 267 QLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNC 334 (806)
Q Consensus 267 ~i~~lp~-~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 334 (806)
+|+++|. .|+.|..|+-|.+..|++.- .+.+..|++|..|.+..|.+..++. .+..+..++++.+..+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 5666553 45556666666665555444 4555556666666666665555555 3555555555555443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=5.4e-13 Score=151.81 Aligned_cols=228 Identities=20% Similarity=0.277 Sum_probs=165.0
Q ss_pred ccccccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcE
Q 003639 204 IALKECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQT 283 (806)
Q Consensus 204 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~ 283 (806)
.++.+++.|++++|++..+|... .++|++|++.+|. +..+ |..+ ..+|+.|++++|.+..+|..+. .+|++
T Consensus 196 ~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~-LtsL--P~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 196 CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQ-LTSI--PATL---PDTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc-cccC--Chhh---hccccEEECcCCccCcCChhHh--CCCCE
Confidence 46778999999999999998743 3699999999885 5567 7655 2479999999999999998774 58999
Q ss_pred EEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc
Q 003639 284 LCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE 362 (806)
Q Consensus 284 L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~ 362 (806)
|++++|.++. |..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|.+.
T Consensus 267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 267 LDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALT 338 (754)
T ss_pred EECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccc
Confidence 9999999988 76664 589999999999999987654 579999999986 7788865 3 368999999998765
Q ss_pred ccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccccc
Q 003639 363 WDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKKLQ 442 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~l~ 442 (806)
.....+ .++|+.|++++|....+|..+ . ..++.|+++.+.....|..+.
T Consensus 339 ------------~LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p----------------~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 339 ------------SLPASL--PPELQVLDVSKNQITVLPETL-P----------------PTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred ------------cCChhh--cCcccEEECCCCCCCcCChhh-c----------------CCcCEEECCCCcCCCCCHhHH
Confidence 112223 268999999999887777643 1 344555555554444444432
Q ss_pred cccceeeeeccccCCcchhccccc--ccccCCCcEEEeccCC
Q 003639 443 GIKDVEYLCLEKLQDVKNVLFDLD--TEGFSQLKHLHVQNNP 482 (806)
Q Consensus 443 ~l~~L~~L~l~~~~~~~~~~~~l~--~~~~~~L~~L~l~~~~ 482 (806)
.+|+.|+++++. +..++..++ ...++++..|.+.+++
T Consensus 388 --~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 --AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 357777777653 333332221 1234666777776654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=5.8e-14 Score=138.99 Aligned_cols=294 Identities=19% Similarity=0.244 Sum_probs=169.9
Q ss_pred EEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEEecC-c
Q 003639 212 ISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVE-C 289 (806)
Q Consensus 212 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~-~ 289 (806)
++-++..+.++|...- +....+.+..| .+..+ |...|+.+++||.|||++|.|+. -|+.|..++.|-.|-+.+ |
T Consensus 51 VdCr~~GL~eVP~~LP-~~tveirLdqN-~I~~i--P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP-PETVEIRLDQN-QISSI--PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC-CcceEEEeccC-CcccC--ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3344455566665321 24556677776 57777 88888888888888888888888 467888888887777766 6
Q ss_pred CCCC-c-hhhcCCCccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCccc----
Q 003639 290 MLDD-I-AIIGKLKNLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVE---- 362 (806)
Q Consensus 290 ~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~---- 362 (806)
+|++ | ..|++|..|+-|.+.-|++.-++. .+..|++|..|.+.++. +..++.+.+..+..++++.+..+...
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccc
Confidence 7888 4 668888888888888887775554 47888888888888865 77787766788888888876654322
Q ss_pred --ccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCcccccccc
Q 003639 363 --WDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSKK 440 (806)
Q Consensus 363 --~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 440 (806)
|-... ....+.+.+.........+........+..-+...+
T Consensus 206 L~wla~~-----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-------------------------------- 248 (498)
T KOG4237|consen 206 LPWLADD-----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL-------------------------------- 248 (498)
T ss_pred cchhhhH-----HhhchhhcccceecchHHHHHHHhcccchhhhhhhH--------------------------------
Confidence 10000 000000000000000000000000000000000000
Q ss_pred cccccceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccccccccccc
Q 003639 441 LQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD 520 (806)
Q Consensus 441 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 520 (806)
..+..-....|. ...+.+..-..++++|++|+++++ .++.+... .......+++|++.. ++++.+..+
T Consensus 249 ----esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~-----aFe~~a~l~eL~L~~-N~l~~v~~~ 316 (498)
T KOG4237|consen 249 ----ESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNN-KITRIEDG-----AFEGAAELQELYLTR-NKLEFVSSG 316 (498)
T ss_pred ----HhHHHhhccccC-cCCcChHHHHhhcccceEeccCCC-ccchhhhh-----hhcchhhhhhhhcCc-chHHHHHHH
Confidence 000000000110 000111111256888888888877 45554211 123345677777776 356655443
Q ss_pred ccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeec
Q 003639 521 RLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVIN 563 (806)
Q Consensus 521 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 563 (806)
. ...+..|+.|++++ ++++.+.| ..++.+.+|.+|.+-.
T Consensus 317 ~--f~~ls~L~tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 317 M--FQGLSGLKTLSLYD-NQITTVAP-GAFQTLFSLSTLNLLS 355 (498)
T ss_pred h--hhccccceeeeecC-CeeEEEec-ccccccceeeeeehcc
Confidence 3 45678899999999 88888866 3567788888888854
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-12 Score=151.15 Aligned_cols=174 Identities=21% Similarity=0.265 Sum_probs=124.1
Q ss_pred cccEEEEEeCCC--CCCCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCc
Q 003639 207 KECYAISLRGCS--IHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 282 (806)
Q Consensus 207 ~~lr~l~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~ 282 (806)
.+++.|-+..|. +..++. +..++.||+|++++|....++ |..+ +.+-+||+|+++++.+..+|..+++|+.|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL--PSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC--ChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 368899999886 556665 667999999999999888998 9887 999999999999999999999999999999
Q ss_pred EEEecCcCC-CC-chhhcCCCccceEeccCCCCccc---ChhccCCCcCCEEeccCCccccccChhhhhcCCCCCE----
Q 003639 283 TLCLVECML-DD-IAIIGKLKNLEILSFWGSGIVKL---PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEE---- 353 (806)
Q Consensus 283 ~L~L~~~~l-~~-~~~i~~L~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~---- 353 (806)
+|++..+.- .. +..+..|.+||+|.+.......- -..+.+|.+|+.+...... . .+-.. +..++.|+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s-~-~~~e~-l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS-V-LLLED-LLGMTRLRSLLQS 698 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch-h-HhHhh-hhhhHHHHHHhHh
Confidence 999999873 34 56667799999999987642211 1234455555555554332 1 11111 333444442
Q ss_pred EEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCc
Q 003639 354 LYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNV 398 (806)
Q Consensus 354 L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~ 398 (806)
+.+.++. ....+..++.+.+|+.|.|.......
T Consensus 699 l~~~~~~------------~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 699 LSIEGCS------------KRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhcccc------------cceeecccccccCcceEEEEcCCCch
Confidence 2222221 13456778888889999888776653
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=5.9e-13 Score=133.19 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=94.7
Q ss_pred ccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeecccc
Q 003639 644 ALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEG 722 (806)
Q Consensus 644 ~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~ 722 (806)
..++|+.|.++.| ++++.-...+. .+.+.|+.+++.+|...++---.+...+++.|++|.++.|..+.+- +
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~----g 389 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE----G 389 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhh----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh----h
Confidence 4577777777777 55443222211 2557777777777766554312234457778888888887655432 1
Q ss_pred ccCCC-CCcccccccccccccccccccccCCCCCcCCCCCcCEEeEecCCCceeecc-cchhhcccccccCCCCCCCCCc
Q 003639 723 ADDHV-PPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS-ELFSFFKSSEEDKPDIPARQPL 800 (806)
Q Consensus 723 ~~~~~-~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~L~~lp~-~~~~~l~~L~~~~~~~~~~~~~ 800 (806)
.. .+ ........|..+++.+||.+++--.. ++..+++|+.+++.+|..+++=|. .+...+++++..+...+..-|=
T Consensus 390 i~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 390 IR-HLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred hh-hhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence 00 00 00124667888888888877654333 356788999999999999976665 4778999998888777766663
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.10 E-value=5.3e-13 Score=133.48 Aligned_cols=289 Identities=16% Similarity=0.136 Sum_probs=166.8
Q ss_pred ceeeeeccccCCcchhcccccccccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEecccccccccccccccccC
Q 003639 446 DVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ 525 (806)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 525 (806)
.|+.|.+.+|..+..-........+|++++|.+.+|.++++. ........+++|+.|.+..|.++++.... .-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~----s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS----SLLSLARYCRKLRHLNLHSCSSITDVSLK-YLAE 213 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH----HHHHHHHhcchhhhhhhcccchhHHHHHH-HHHH
Confidence 355556666555443322222244666666666666544431 11112234556666666666655543211 0123
Q ss_pred CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccc
Q 003639 526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFC 605 (806)
Q Consensus 526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~ 605 (806)
.+++|++|+++.|+.+++-......+.+..++.+...+|..++.-... ..-...+-+.++++.+|..+++..
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~--------~~~~~~~~i~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALL--------KAAAYCLEILKLNLQHCNQLTDED 285 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHH--------HHhccChHhhccchhhhccccchH
Confidence 566777777777766665211123344445555555555443321100 001123344455555665444321
Q ss_pred cCCcccccccCcccccccccccccccccccccccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEec
Q 003639 606 CGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILRK 684 (806)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~~ 684 (806)
.+.....+..|+.|+.++| ++++.....+. ++.++|+.|.+.+
T Consensus 286 --------------------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg----~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 286 --------------------------------LWLIACGCHALQVLCYSSCTDITDEVLWALG----QHCHNLQVLELSG 329 (483)
T ss_pred --------------------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHh----cCCCceEEEeccc
Confidence 2223345788999999999 65553222221 4679999999999
Q ss_pred CCCcceecchhhHhhhcccceEEEeccccccee--eccccccCCCCCcccccccccccccccccccccCCC---CCcCCC
Q 003639 685 CPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEI--ISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPG---MHTSEW 759 (806)
Q Consensus 685 C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i--~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~---~~~~~l 759 (806)
|.++++..-.....+.+.|+.+++.+|..+.+- .... ..+|.|+.|++++|..+++.... ....+.
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls---------~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS---------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc---------cCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 999887644445578899999999998655432 1111 16999999999999988876211 112345
Q ss_pred CCcCEEeEecCCCceeecccchhhcccccccCC
Q 003639 760 PALKLLDVSACDQVTVFDSELFSFFKSSEEDKP 792 (806)
Q Consensus 760 ~sL~~L~i~~C~~L~~lp~~~~~~l~~L~~~~~ 792 (806)
..|+.+.+.+||.++.-.......-++|+.+..
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 789999999999986555555667777766543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=7.1e-11 Score=125.03 Aligned_cols=181 Identities=22% Similarity=0.170 Sum_probs=113.6
Q ss_pred ccEEEEEeCCCCC-----CCCC-CCCCCCccEEEecCCCCcc--c-ccCCChhhhcCCCceEEEeecCCCcc-CCccccc
Q 003639 208 ECYAISLRGCSIH-----ELPE-GLECPRLEFLHINPKDSLF--D-INNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDL 277 (806)
Q Consensus 208 ~lr~l~l~~~~~~-----~l~~-~~~~~~Lr~L~l~~~~~~~--~-~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~ 277 (806)
.++.+.+.++.+. .+++ ....+.++.|.+.++.... . +......+..+.+|+.|++++|.+.. .+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4677777777762 2222 2345667888777764321 0 00011234667888888888887764 4444544
Q ss_pred ccC---CcEEEecCcCCCC------chhhcCC-CccceEeccCCCCc-----ccChhccCCCcCCEEeccCCcccc----
Q 003639 278 LVN---LQTLCLVECMLDD------IAIIGKL-KNLEILSFWGSGIV-----KLPEELGHLTKLRQLDLSNCFKLK---- 338 (806)
Q Consensus 278 l~~---L~~L~L~~~~l~~------~~~i~~L-~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~---- 338 (806)
+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|. ++
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence 444 8888888888763 2345666 88888888888776 344556777888888888875 43
Q ss_pred -ccChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639 339 -VIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397 (806)
Q Consensus 339 -~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 397 (806)
.++.. +...++|++|++++|.+. ..........+..+++|+.|+++++...
T Consensus 183 ~~l~~~-l~~~~~L~~L~L~~n~i~-------~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 183 RALAEG-LKANCNLEVLDLNNNGLT-------DEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHH-HHhCCCCCEEeccCCccC-------hHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 22222 455668888888887664 1111223345666778888888876644
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.9e-11 Score=126.97 Aligned_cols=177 Identities=24% Similarity=0.273 Sum_probs=149.8
Q ss_pred ccEEEEEeCCCCCCCCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEe
Q 003639 208 ECYAISLRGCSIHELPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCL 286 (806)
Q Consensus 208 ~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L 286 (806)
.....+++.|++..+|. ...+-.|..+.+..|. +..+ |..+ .++..|.+|+|+.|++..+|..++.|+ |++|-+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~i--p~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTI--PEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceec--chhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 45667788888888886 3446778888888774 4455 6665 899999999999999999999887765 999999
Q ss_pred cCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccC
Q 003639 287 VECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 365 (806)
Q Consensus 287 ~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 365 (806)
++|+++. |+.++.+..|..||.+.|.+..+|..++.+.+|+.|++..|. +..+|.+ +..| .|..|+++.|.+.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis--- 224 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS--- 224 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee---
Confidence 9999998 999999999999999999999999999999999999999876 8889988 7744 5889999988876
Q ss_pred CCCCchhhhccccccCCCCCCcEEEEEecCCCcCCcccc
Q 003639 366 EGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFF 404 (806)
Q Consensus 366 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~ 404 (806)
..+..+.+|+.|++|.+.+|....-|..+.
T Consensus 225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred ---------ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 566788999999999999999888887765
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=7.8e-11 Score=112.71 Aligned_cols=184 Identities=16% Similarity=0.194 Sum_probs=141.5
Q ss_pred ccccccEEEEEeCCCCCCCCCC-CCCCCccEEEecCCCCcc---cccCCChh-------------------hhcCCCceE
Q 003639 204 IALKECYAISLRGCSIHELPEG-LECPRLEFLHINPKDSLF---DINNPCNF-------------------FTGMRKLRV 260 (806)
Q Consensus 204 ~~~~~lr~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~---~~~~~~~~-------------------~~~l~~Lr~ 260 (806)
.+.+++..+-++.+.-+.+... ..-+.|.++.+....... -+ |... ....+.|..
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~--pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL--PETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc--chhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 3456667777776665544442 234567777766532110 00 1100 123467999
Q ss_pred EEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCcccccc
Q 003639 261 VDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVI 340 (806)
Q Consensus 261 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 340 (806)
+||++|.|+.+.+++.-++.+|.|++++|.+....++..|.+|+.|||++|.++++-.+=.+|-|.++|.+++|. +.++
T Consensus 289 lDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~L 367 (490)
T KOG1259|consen 289 LDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETL 367 (490)
T ss_pred ccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhh
Confidence 999999999999999999999999999999999888999999999999999988887777788999999999976 7777
Q ss_pred ChhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCcc
Q 003639 341 APNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEG 402 (806)
Q Consensus 341 p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~ 402 (806)
.. +++|-+|..|++++|.+. .-..+..+++++.|+.+.+.+|....++..
T Consensus 368 SG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 368 SG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 54 899999999999999875 234567899999999999999987766643
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.9e-11 Score=125.70 Aligned_cols=188 Identities=23% Similarity=0.321 Sum_probs=155.7
Q ss_pred EEEEeCCCCCCCCC---CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639 211 AISLRGCSIHELPE---GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287 (806)
Q Consensus 211 ~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 287 (806)
++.|++.++..+|. ...+......+++.| ....+ |..+ ..+..|..+.++.|.+..+|..++++..|.+|||+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~el--p~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSEL--PEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc-ccccC--chHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhc
Confidence 34555555555542 244555666777777 45666 7776 88899999999999999999999999999999999
Q ss_pred CcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCC
Q 003639 288 ECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 366 (806)
Q Consensus 288 ~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 366 (806)
.|.+.. |..++.|+ |+.|-+++|+++.+|..|+.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 130 ~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~---- 202 (722)
T KOG0532|consen 130 SNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE---- 202 (722)
T ss_pred cchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh----
Confidence 999998 88888876 899999999999999999999999999999987 8899988 999999999999988776
Q ss_pred CCCchhhhccccccCCCCCCcEEEEEecCCCcCCcccc-ccccceEEEeeeec
Q 003639 367 GPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFF-ARKLERLSWALFAI 418 (806)
Q Consensus 367 ~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~~~~~~~ 418 (806)
..+.++..|+ |..|++++|.+..+|-.+. ++.|+.|.++.++.
T Consensus 203 --------~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 203 --------DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred --------hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCC
Confidence 5667777664 8999999999999998875 67777776665544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=3.8e-10 Score=104.46 Aligned_cols=133 Identities=26% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-ch
Q 003639 217 CSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IA 295 (806)
Q Consensus 217 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~ 295 (806)
+.++..+...++.++|.|++.++. +..+ . .+-..+.+|++|++++|.|+.++ .+..+++|++|++++|.++. .+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~-I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQ-ISTI--E-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccc-cccc--c-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 344455555555556666666653 2222 1 11113455666666666665554 34555666666666666555 23
Q ss_pred hh-cCCCccceEeccCCCCcccC--hhccCCCcCCEEeccCCccccccC---hhhhhcCCCCCEEE
Q 003639 296 II-GKLKNLEILSFWGSGIVKLP--EELGHLTKLRQLDLSNCFKLKVIA---PNVISRLVRLEELY 355 (806)
Q Consensus 296 ~i-~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p---~~~l~~L~~L~~L~ 355 (806)
.+ ..+++|++|++++|+|..+. ..+..+++|++|++.+|+ +...+ .-++..+++|+.|+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 33 24556666666655554332 124455555555555554 22222 12244555555554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=6.6e-10 Score=117.60 Aligned_cols=239 Identities=18% Similarity=0.102 Sum_probs=130.5
Q ss_pred CCCCccEEEecCCCCcc----cccCCChhhhcCCCceEEEeecCCCcc-------CCcccccccCCcEEEecCcCCCC--
Q 003639 227 ECPRLEFLHINPKDSLF----DINNPCNFFTGMRKLRVVDFTRMQLLL-------LPSSIDLLVNLQTLCLVECMLDD-- 293 (806)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~----~~~~~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~l~~l~~L~~L~L~~~~l~~-- 293 (806)
.++.|+.|.+.++.... .+ + ..+...+.++.|+++++.+.. ++..+..+++|++|++++|.+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i--~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKAL--A-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHH--H-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 34557777777765311 12 2 223556667777777776552 33455667778888887777653
Q ss_pred chhhcCCCc---cceEeccCCCCc-----ccChhccCC-CcCCEEeccCCcccc-----ccChhhhhcCCCCCEEEeecC
Q 003639 294 IAIIGKLKN---LEILSFWGSGIV-----KLPEELGHL-TKLRQLDLSNCFKLK-----VIAPNVISRLVRLEELYMSNC 359 (806)
Q Consensus 294 ~~~i~~L~~---L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~~p~~~l~~L~~L~~L~l~~~ 359 (806)
+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|. +. .++.. +..+++|++|++++|
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l~~n 175 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNLANN 175 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEECcCC
Confidence 444544444 788888777665 233345566 777778777776 33 22222 556667777777777
Q ss_pred cccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCCccccccccceEEEeeeecCccccceEEEeecCccccccc
Q 003639 360 FVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLPEGFFARKLERLSWALFAIDDHETMRTLKLKLNSVSICSK 439 (806)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 439 (806)
.+.+ .........+..+++|+.|+++++........ ....
T Consensus 176 ~l~~-------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------------------------------~l~~ 215 (319)
T cd00116 176 GIGD-------AGIRALAEGLKANCNLEVLDLNNNGLTDEGAS---------------------------------ALAE 215 (319)
T ss_pred CCch-------HHHHHHHHHHHhCCCCCEEeccCCccChHHHH---------------------------------HHHH
Confidence 6541 11112233445556777777776654321110 0112
Q ss_pred ccccccceeeeeccccCCcchhcccccc---cccCCCcEEEeccCCCceEEecCCCCCCCCCCCCcceEEeccccc
Q 003639 440 KLQGIKDVEYLCLEKLQDVKNVLFDLDT---EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI 512 (806)
Q Consensus 440 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 512 (806)
.+..+++|++|++++|.........+.. ...+.|++|++.+|. ++.. +..........+++|+.+++.++.
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~-~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDD-GAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcH-HHHHHHHHHhcCCCccEEECCCCC
Confidence 2334677888888776432211111100 124688888888873 2210 000001122345788888888753
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.4e-09 Score=100.61 Aligned_cols=122 Identities=21% Similarity=0.358 Sum_probs=56.9
Q ss_pred cccEEEEEeCCCCCCCCCCC-CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCccc-ccccCCcEE
Q 003639 207 KECYAISLRGCSIHELPEGL-ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI-DLLVNLQTL 284 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l-~~l~~L~~L 284 (806)
...|.|+++++.+..+.... .+.+|++|++++|. +..+ + . +..+++|++|++++|.|+.+++.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l--~-~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKL--E-G-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S----T-T-----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCC-Cccc--c-C-ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 45799999999998887754 57899999999995 5555 3 3 478999999999999999987655 469999999
Q ss_pred EecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCCcCCEEeccC
Q 003639 285 CLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLTKLRQLDLSN 333 (806)
Q Consensus 285 ~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~ 333 (806)
++++|.+.+ ...++.+++|++|++.+|.+...+. -|..+++|+.||-..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999876 5778899999999999998886654 378899999998754
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=6.7e-09 Score=113.18 Aligned_cols=174 Identities=25% Similarity=0.315 Sum_probs=108.8
Q ss_pred cccEEEEEeCCCCCCCCCCCCCC--CccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEE
Q 003639 207 KECYAISLRGCSIHELPEGLECP--RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 284 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L 284 (806)
..+..+++.++.+.+++...... +|+.|++.+|. +..+ |..+ ..++.|+.|++++|++..+|...+.+..|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l--~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESL--PSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc-hhhh--hhhh-hccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 34667777777777776655443 67777777663 3333 3232 66777777777777777776666666777777
Q ss_pred EecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccc
Q 003639 285 CLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEW 363 (806)
Q Consensus 285 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~ 363 (806)
++++|.+.. |..++.+.+|++|.+++|.+...+..+.++.++..+.+.++. +..++.. ++.+.+++.|+++++.+.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc-
Confidence 777777666 555566666777777776555666666677777766665544 4444443 666777777777666554
Q ss_pred cCCCCCchhhhccccccCCCCCCcEEEEEecCCCcC
Q 003639 364 DDEGPNSERINARLDELMHLPRLATLEVHVKNDNVL 399 (806)
Q Consensus 364 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~ 399 (806)
.+..++.+.+++.|+++++.....
T Consensus 269 ------------~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 ------------SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ------------ccccccccCccCEEeccCcccccc
Confidence 222366666777777766655443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=2.1e-08 Score=109.30 Aligned_cols=104 Identities=31% Similarity=0.417 Sum_probs=52.5
Q ss_pred cCCCceEEEeecCCCccCCccccccc-CCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEec
Q 003639 254 GMRKLRVVDFTRMQLLLLPSSIDLLV-NLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331 (806)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 331 (806)
.+..++.|++.++.+..+|.....+. +|+.|+++++.+.. |..++.+++|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 33445555555555555555444443 55555555555554 34555555555555555555555554445555555555
Q ss_pred cCCccccccChhhhhcCCCCCEEEeecC
Q 003639 332 SNCFKLKVIAPNVISRLVRLEELYMSNC 359 (806)
Q Consensus 332 ~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 359 (806)
+++. +..+|.. ++.+..|++|.++++
T Consensus 194 s~N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred cCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence 5543 4555543 334444555555444
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=9.1e-09 Score=104.23 Aligned_cols=188 Identities=22% Similarity=0.194 Sum_probs=130.0
Q ss_pred ccccEEEEEeCCCCCCCCC---CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcc--cccccC
Q 003639 206 LKECYAISLRGCSIHELPE---GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSS--IDLLVN 280 (806)
Q Consensus 206 ~~~lr~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~--l~~l~~ 280 (806)
.+.+|.+++.++.+...+. ...|+++|.|++++|- +..+..-..+...+++|+.|+++.|.+....++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 5678999999888866652 4569999999999883 211100124567899999999999987654332 236889
Q ss_pred CcEEEecCcCCCC---chhhcCCCccceEeccCC-CCcccChhccCCCcCCEEeccCCccccccCh-hhhhcCCCCCEEE
Q 003639 281 LQTLCLVECMLDD---IAIIGKLKNLEILSFWGS-GIVKLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELY 355 (806)
Q Consensus 281 L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~ 355 (806)
|+.|.++.|.++. ......+++|..|+|.+| .+..--.....+..|+.|++++|. +..++. ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhh
Confidence 9999999999875 345567899999999998 433333345667889999999977 555542 1278899999999
Q ss_pred eecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCCcCC
Q 003639 356 MSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNVLP 400 (806)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~ 400 (806)
++.|.+... ..+ ..........+++|+.|++..|.+...+
T Consensus 278 ls~tgi~si-~~~----d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 278 LSSTGIASI-AEP----DVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred ccccCcchh-cCC----CccchhhhcccccceeeecccCcccccc
Confidence 988876511 100 1112233456778888888877765443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=8.9e-09 Score=98.87 Aligned_cols=130 Identities=24% Similarity=0.218 Sum_probs=98.3
Q ss_pred CCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccce
Q 003639 227 ECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEI 305 (806)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~ 305 (806)
.+..|.++++++|. +..+ ..+. +-.+.+|+|++++|.+..+-. +..+++|+.|||++|.++. ..--.+|-|..+
T Consensus 282 TWq~LtelDLS~N~-I~~i--DESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQI--DESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccc-hhhh--hhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 46678888888884 4444 4443 667888999999998887654 7888899999999988777 333347778888
Q ss_pred EeccCCCCcccChhccCCCcCCEEeccCCccccccCh-hhhhcCCCCCEEEeecCcccc
Q 003639 306 LSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAP-NVISRLVRLEELYMSNCFVEW 363 (806)
Q Consensus 306 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~~ 363 (806)
|.|++|.|..+. ++++|.+|..|++++|. +..+.. ..+|+|+.|+++.+.+|.+..
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 899998888774 68889999999998876 555432 228899999999888887653
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=2.2e-07 Score=96.68 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccccchhcccCcccccccccccccccceEecCCCCCccccc
Q 003639 526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFC 605 (806)
Q Consensus 526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l~ 605 (806)
.+++++.|++++| .++.+| .-.++|++|.+.+|..++.++. . ..++|+.|.+.+|+++..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~----------~--LP~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTTLPG----------S--IPEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCcccCCc----------h--hhhhhhheEccCcccccccc
Confidence 3578888999987 788775 2345788888888888876651 1 23578888888887665443
Q ss_pred cCCcccccccCcccccccccccccccccccccccccccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecC
Q 003639 606 CGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKC 685 (806)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C 685 (806)
++|+.|++.++....+. .+| ++|+.|.+.++
T Consensus 112 ----------------------------------------~sLe~L~L~~n~~~~L~--~LP-------ssLk~L~I~~~ 142 (426)
T PRK15386 112 ----------------------------------------ESVRSLEIKGSATDSIK--NVP-------NGLTSLSINSY 142 (426)
T ss_pred ----------------------------------------cccceEEeCCCCCcccc--cCc-------chHhheecccc
Confidence 34666666654333221 122 46777777543
Q ss_pred CCcceecchhhHhhhcccceEEEecccccceeeccccccCCCCCcccccccccccccccc--cccccCCC-CCcCCCCCc
Q 003639 686 PKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLP--ELKCLYPG-MHTSEWPAL 762 (806)
Q Consensus 686 ~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~L~~l~~~-~~~~~l~sL 762 (806)
+.....+.. ..-+++|++|+|++|..+. + +.+ .+.+|+.|.++.+. .+ .++.. .+ +++
T Consensus 143 n~~~~~~lp--~~LPsSLk~L~Is~c~~i~-L--P~~---------LP~SLk~L~ls~n~~~sL-eI~~~sLP----~nl 203 (426)
T PRK15386 143 NPENQARID--NLISPSLKTLSLTGCSNII-L--PEK---------LPESLQSITLHIEQKTTW-NISFEGFP----DGL 203 (426)
T ss_pred ccccccccc--cccCCcccEEEecCCCccc-C--ccc---------ccccCcEEEecccccccc-cCcccccc----ccc
Confidence 322111000 0123578888888876442 1 222 46678888876542 11 12221 21 345
Q ss_pred CEEeEecCCCc
Q 003639 763 KLLDVSACDQV 773 (806)
Q Consensus 763 ~~L~i~~C~~L 773 (806)
.|.+.+|-++
T Consensus 204 -~L~f~n~lkL 213 (426)
T PRK15386 204 -DIDLQNSVLL 213 (426)
T ss_pred -Eechhhhccc
Confidence 6777777543
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=1.8e-07 Score=97.31 Aligned_cols=118 Identities=22% Similarity=0.367 Sum_probs=78.1
Q ss_pred ccccCCcceeeecceeeeecCCCCCcccccccCCCccEEEEecCCCcceecchhhHhhhcccceEEEecccccceeeccc
Q 003639 642 KVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKE 721 (806)
Q Consensus 642 ~~~~~~L~~L~l~~c~l~~i~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~L~~i~~~~ 721 (806)
+..+.+++.|+|++|.++.+|. .| ++|++|.|++|++|+.+| +.+ .++|++|+|++|.++..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--LP-------~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL---- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--LP-------NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL---- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--CC-------CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc----
Confidence 3456899999999998888862 33 679999999999998885 322 468999999999877655
Q ss_pred cccCCCCCcccccccccccccc--cccccccCCCCC---c------------CCC-CCcCEEeEecCCCceeecccchhh
Q 003639 722 GADDHVPPNFVFLQVTTLILLG--LPELKCLYPGMH---T------------SEW-PALKLLDVSACDQVTVFDSELFSF 783 (806)
Q Consensus 722 ~~~~~~~~~~~~~~L~~L~l~~--c~~L~~l~~~~~---~------------~~l-~sL~~L~i~~C~~L~~lp~~~~~~ 783 (806)
+++|+.|.+.. |..+..+|.++. + ..+ ++|++|.|.+|..+ .+|..++.+
T Consensus 111 -----------P~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP~S 178 (426)
T PRK15386 111 -----------PESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLPES 178 (426)
T ss_pred -----------ccccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccccc
Confidence 23333333322 222333333310 0 011 58999999888865 466667666
Q ss_pred ccccc
Q 003639 784 FKSSE 788 (806)
Q Consensus 784 l~~L~ 788 (806)
|+.|.
T Consensus 179 Lk~L~ 183 (426)
T PRK15386 179 LQSIT 183 (426)
T ss_pred CcEEE
Confidence 66665
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-07 Score=96.23 Aligned_cols=181 Identities=19% Similarity=0.159 Sum_probs=132.1
Q ss_pred ccccccEEEEEeCCCCCCCCC---C-CCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc--CCccccc
Q 003639 204 IALKECYAISLRGCSIHELPE---G-LECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDL 277 (806)
Q Consensus 204 ~~~~~lr~l~l~~~~~~~l~~---~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~ 277 (806)
....++|.|+++.|-+..... + ..+++|+.|.++.|...... ....-..+.+|+.|.++.|+++. +-..+..
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~--~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI--SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc--cccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 456789999999987643332 2 35899999999998644333 22223568999999999999874 4445567
Q ss_pred ccCCcEEEecCcC-CCC-chhhcCCCccceEeccCCCCcccC--hhccCCCcCCEEeccCCcccccc--Ch-h---hhhc
Q 003639 278 LVNLQTLCLVECM-LDD-IAIIGKLKNLEILSFWGSGIVKLP--EELGHLTKLRQLDLSNCFKLKVI--AP-N---VISR 347 (806)
Q Consensus 278 l~~L~~L~L~~~~-l~~-~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~--p~-~---~l~~ 347 (806)
+++|..|+|.+|. +.. -....-+..|+.|||++|.+..++ .-++.++.|+.|+++.|. +.++ |. + ....
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 8999999999995 322 445566788999999999888777 458999999999999876 5443 22 1 1356
Q ss_pred CCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397 (806)
Q Consensus 348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 397 (806)
.++|++|++..|.+. .-..+..+..+++|+.|.+..+...
T Consensus 300 f~kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR----------DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccc----------cccccchhhccchhhhhhccccccc
Confidence 789999999998874 1135567777788888887765543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-08 Score=97.40 Aligned_cols=82 Identities=28% Similarity=0.376 Sum_probs=47.0
Q ss_pred CcEEEecCcCCCC---chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccCCccccccChh-hhhcCCCCCEEE
Q 003639 281 LQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSNCFKLKVIAPN-VISRLVRLEELY 355 (806)
Q Consensus 281 L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~l~~L~~L~~L~ 355 (806)
|++|||+...++. ..-+..+.+|+.|.+.+..+. .+-..|.+-.+|+.|+++.|..++..... .+.+++.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555544443 233444555555555555444 23334556667777777777666554322 357778888888
Q ss_pred eecCccc
Q 003639 356 MSNCFVE 362 (806)
Q Consensus 356 l~~~~~~ 362 (806)
+++|...
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 8888665
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=6.2e-07 Score=102.38 Aligned_cols=101 Identities=22% Similarity=0.329 Sum_probs=50.4
Q ss_pred ceEEEeecCCCcc-CCcccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCc-ccChhccCCCcCCEEeccC
Q 003639 258 LRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIV-KLPEELGHLTKLRQLDLSN 333 (806)
Q Consensus 258 Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~ 333 (806)
++.|+|++|.+.. +|..++++++|++|+|++|.+.. |..++.+++|++|+|++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4455555555543 45555555555555555555543 445555555555555555554 4455555555555555555
Q ss_pred CccccccChhhhhc-CCCCCEEEeecC
Q 003639 334 CFKLKVIAPNVISR-LVRLEELYMSNC 359 (806)
Q Consensus 334 ~~~l~~~p~~~l~~-L~~L~~L~l~~~ 359 (806)
|.....+|.. ++. ..++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 5433344443 332 233444444433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.9e-07 Score=69.81 Aligned_cols=54 Identities=30% Similarity=0.358 Sum_probs=21.5
Q ss_pred ceEEEeecCCCccCC-cccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCC
Q 003639 258 LRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGS 311 (806)
Q Consensus 258 Lr~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~ 311 (806)
|++|++++|.++.+| ..+..+++|++|++++|.++. +..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444433 233334444444444444333 233344444444444433
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=6.9e-07 Score=102.00 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=92.4
Q ss_pred CccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEEecCcCCCC--chhhcCCCccceE
Q 003639 230 RLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEIL 306 (806)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L 306 (806)
.++.|++.++.....+ |..+ .++++|++|+|++|.+.. +|..++.+++|++|+|++|.+.. |..++++++|++|
T Consensus 419 ~v~~L~L~~n~L~g~i--p~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI--PNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccC--CHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4788999988776677 7765 999999999999999984 99999999999999999999986 8999999999999
Q ss_pred eccCCCCc-ccChhccCC-CcCCEEeccCCccccc
Q 003639 307 SFWGSGIV-KLPEELGHL-TKLRQLDLSNCFKLKV 339 (806)
Q Consensus 307 ~L~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~ 339 (806)
+|++|.+. .+|..++.+ .++..+++.+|..+..
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 99999888 889888764 5778888888764433
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.3e-07 Score=68.85 Aligned_cols=57 Identities=37% Similarity=0.510 Sum_probs=27.1
Q ss_pred ccceEeccCCCCcccCh-hccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecC
Q 003639 302 NLEILSFWGSGIVKLPE-ELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNC 359 (806)
Q Consensus 302 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~ 359 (806)
+|++|++++|+++.+|. .+..+++|++|++++|. ++.++++.+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444444443 24445555555555443 44444444455555555555444
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=1.8e-08 Score=108.08 Aligned_cols=174 Identities=23% Similarity=0.245 Sum_probs=124.5
Q ss_pred ccccEEEEEeCCCCCCCCCCCC-CCCccEEEecCCC---------CcccccCCChhhhcCCCceEEEeecCCCccCCccc
Q 003639 206 LKECYAISLRGCSIHELPEGLE-CPRLEFLHINPKD---------SLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSI 275 (806)
Q Consensus 206 ~~~lr~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~---------~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l 275 (806)
.+.+|+|-+.++.+........ -..|++|.....- ..+++ ..++ .-..|.+.+.++|.+..+..++
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~--~ns~--~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDI--SNSP--VWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhcccc--ccch--hhhhHhhhhcchhhHHhHHHHH
Confidence 4578899988888755433222 1244444443221 11122 1111 1246778888889888888888
Q ss_pred ccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCCCEE
Q 003639 276 DLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEEL 354 (806)
Q Consensus 276 ~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L 354 (806)
.-+++|+.|||++|+++..+.+..|.+|.+|||++|.+..+|.- ...+. |+.|++++|. ++.+-. +.+|.+|+.|
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL~g--ie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTLRG--IENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhhhh--HHhhhhhhcc
Confidence 88999999999999999877899999999999999999888863 23333 9999999876 777754 8999999999
Q ss_pred EeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639 355 YMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397 (806)
Q Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 397 (806)
+++.|-+. ....+.-|..+..|+.|.+.||...
T Consensus 260 DlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 260 DLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988665 1234566677778888888887653
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.7e-07 Score=102.15 Aligned_cols=107 Identities=26% Similarity=0.320 Sum_probs=81.6
Q ss_pred hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccCCCcCCEEecc
Q 003639 253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS 332 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 332 (806)
..++.|.+|++.+|.|..+...+..+++|++|++++|.|+....+..+..|+.|++++|.|+.++ ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 67788888888888888776557778888888888888888777778888888888888887764 46668888888888
Q ss_pred CCccccccCh-hhhhcCCCCCEEEeecCccc
Q 003639 333 NCFKLKVIAP-NVISRLVRLEELYMSNCFVE 362 (806)
Q Consensus 333 ~~~~l~~~p~-~~l~~L~~L~~L~l~~~~~~ 362 (806)
+|. +..+.. . +..+.+++.+.+.++.+.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 876 555554 2 367778888887777654
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=6.3e-06 Score=56.96 Aligned_cols=37 Identities=32% Similarity=0.435 Sum_probs=18.0
Q ss_pred CceEEEeecCCCccCCcccccccCCcEEEecCcCCCC
Q 003639 257 KLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD 293 (806)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~ 293 (806)
+|++|++++|.|+++|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555555445555555555555554443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.1e-07 Score=86.15 Aligned_cols=173 Identities=23% Similarity=0.209 Sum_probs=122.4
Q ss_pred cccEEEEEeCCCCCC--CCC-CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecC-CCcc--CCcccccccC
Q 003639 207 KECYAISLRGCSIHE--LPE-GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRM-QLLL--LPSSIDLLVN 280 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~--l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~i~~--lp~~l~~l~~ 280 (806)
..+++++++...++. +.. ...|++|+-|.+.|+.....+ -..+ .+=.+|+.|+++.+ ++++ +--.+.++..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I--~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI--VNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH--HHHH-hccccceeeccccccccchhHHHHHHHhhhh
Confidence 458899998877632 221 235888999999888655444 3333 77789999999986 4544 2234678999
Q ss_pred CcEEEecCcCCCCc------hhhcCCCccceEeccCC--CC--cccChhccCCCcCCEEeccCCccccccChhhhhcCCC
Q 003639 281 LQTLCLVECMLDDI------AIIGKLKNLEILSFWGS--GI--VKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVR 350 (806)
Q Consensus 281 L~~L~L~~~~l~~~------~~i~~L~~L~~L~L~~~--~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~ 350 (806)
|..|++++|.+..+ .+++ .+|..|+++|+ ++ ..+..-..++++|.+||+++|..++.--...+.+++.
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 99999999986552 2233 46888899987 22 2333336788999999999987666533344788999
Q ss_pred CCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEec
Q 003639 351 LEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVK 394 (806)
Q Consensus 351 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~ 394 (806)
|++|.++.|+.. ....+-++...+.|.+|++.+.
T Consensus 340 L~~lSlsRCY~i----------~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDI----------IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCC----------ChHHeeeeccCcceEEEEeccc
Confidence 999999999765 1245567888889999998754
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=8.9e-07 Score=96.58 Aligned_cols=170 Identities=23% Similarity=0.290 Sum_probs=114.9
Q ss_pred cEEEEEeCCCCCCC-CCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEec
Q 003639 209 CYAISLRGCSIHEL-PEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLV 287 (806)
Q Consensus 209 lr~l~l~~~~~~~l-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~ 287 (806)
+..+++..+.+..+ .....+.++..|++.+|. +..+ . ..+..+.+|++|++++|.|+.+. .+..+..|+.|++.
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i--~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKI--E-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccc-hhhc--c-cchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 44444566666552 224567788888888774 3333 2 21367889999999999888875 46678889999999
Q ss_pred CcCCCCchhhcCCCccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCCCEEEeecCcccccCC
Q 003639 288 ECMLDDIAIIGKLKNLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDE 366 (806)
Q Consensus 288 ~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 366 (806)
+|.++....+..+++|+.+++++|.+..+... ...+.+|+.+.+.++. +..+.. +..+..+..+++..+.+.
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~---- 221 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS---- 221 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce----
Confidence 99988877788899999999999988877654 5788888888888876 444432 444555555566555543
Q ss_pred CCCchhhhccccccCCCCC--CcEEEEEecCCCcC
Q 003639 367 GPNSERINARLDELMHLPR--LATLEVHVKNDNVL 399 (806)
Q Consensus 367 ~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~~~ 399 (806)
.+..+..+.. |+.+++.++.....
T Consensus 222 ---------~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 ---------KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ---------eccCcccchhHHHHHHhcccCccccc
Confidence 2233333333 67777776665544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.2e-05 Score=55.60 Aligned_cols=38 Identities=42% Similarity=0.535 Sum_probs=18.6
Q ss_pred ccceEeccCCCCcccChhccCCCcCCEEeccCCcccccc
Q 003639 302 NLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVI 340 (806)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 340 (806)
+|++|++++|.|+.+|..+++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555555555555555555555555555555543 4433
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=4.9e-06 Score=94.63 Aligned_cols=124 Identities=23% Similarity=0.241 Sum_probs=82.5
Q ss_pred cccEEEEEeCCCCC--CCCC--CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCc
Q 003639 207 KECYAISLRGCSIH--ELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQ 282 (806)
Q Consensus 207 ~~lr~l~l~~~~~~--~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~ 282 (806)
.++++|++++...- .-+. ..-+|.||+|.+.+-.....- -...+.++++|+.||+++++++.+ ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 46888888775431 1111 234788999988875432211 123457888899999999888887 5788888999
Q ss_pred EEEecCcCCCC---chhhcCCCccceEeccCCCCcccCh-------hccCCCcCCEEeccC
Q 003639 283 TLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE-------ELGHLTKLRQLDLSN 333 (806)
Q Consensus 283 ~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~ 333 (806)
+|.+++=.+.. ...+.+|++|++||+|......-+. .-..|++||.||.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 88888777665 5677888888888888764332221 112366666666665
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.85 E-value=2.1e-06 Score=85.08 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=47.9
Q ss_pred ccccceeeeeccccCCcchhcccc--cccccCCCcEEEeccCCCceEEecCCCCC--CCCCCCCcceEEecccccccccc
Q 003639 442 QGIKDVEYLCLEKLQDVKNVLFDL--DTEGFSQLKHLHVQNNPDFMCIVDSKERV--PLDDAFPILESLNLYNLIKLERI 517 (806)
Q Consensus 442 ~~l~~L~~L~l~~~~~~~~~~~~l--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~ 517 (806)
..+++|+.|+|.++.....-...+ ....+++|+.|.+.+|- ++.- +...+ .....+|+|+.|.+.++.--.+-
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~--Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENE--GAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccc--cHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 356677777777654433221111 11346777777777772 2220 00000 01234788888887775422111
Q ss_pred c-ccccccCCCCCccEEEEecC
Q 003639 518 C-QDRLSVQSFNELKTIRVEHC 538 (806)
Q Consensus 518 ~-~~~~~~~~~~~L~~L~l~~c 538 (806)
. .........|.|++|++.+|
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcc
Confidence 0 00112234788999999884
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=91.28 Aligned_cols=104 Identities=25% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCccEEEecCCCCcc-cccCCChhhhcCCCceEEEeecCCCcc--CCcccccccCCcEEEecCcCCCCchhhcCCCccce
Q 003639 229 PRLEFLHINPKDSLF-DINNPCNFFTGMRKLRVVDFTRMQLLL--LPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEI 305 (806)
Q Consensus 229 ~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~ 305 (806)
.+||+|++.|..... .. |..+...++.||.|.+++-.+.. +-.-..++++|+.||+++++++....+++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W--~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGW--PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccH--HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 466777776654321 12 33444556666666666654432 22233456666666666666666666666666666
Q ss_pred EeccCCCCcccC--hhccCCCcCCEEeccCC
Q 003639 306 LSFWGSGIVKLP--EELGHLTKLRQLDLSNC 334 (806)
Q Consensus 306 L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~ 334 (806)
|.+.+-.+..-. ..+-+|++|++||++.-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 666554443211 23555666666666653
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=9e-06 Score=78.72 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=54.7
Q ss_pred hcCCCceEEEeecCCCcc---CCcccccccCCcEEEecCcCCCC-chhh-cCCCccceEeccCCCCc--ccChhccCCCc
Q 003639 253 TGMRKLRVVDFTRMQLLL---LPSSIDLLVNLQTLCLVECMLDD-IAII-GKLKNLEILSFWGSGIV--KLPEELGHLTK 325 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~---lp~~l~~l~~L~~L~L~~~~l~~-~~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~ 325 (806)
....+++.|||.+|.|++ +-..+.++++|++|+++.|.+.. +.+. ..+++|++|-|.++.+. ..-..+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456777888888887765 33345677888888888887766 4544 46677888888777543 44444566666
Q ss_pred CCEEeccCC
Q 003639 326 LRQLDLSNC 334 (806)
Q Consensus 326 L~~L~l~~~ 334 (806)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 666666654
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.76 E-value=1.8e-06 Score=97.31 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=72.9
Q ss_pred cccceeeeeccccCCcchh--cccccccccCCCcEEEeccC-CCceEEecCCCCCCCCCCCCcceEEecccccccccccc
Q 003639 443 GIKDVEYLCLEKLQDVKNV--LFDLDTEGFSQLKHLHVQNN-PDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ 519 (806)
Q Consensus 443 ~l~~L~~L~l~~~~~~~~~--~~~l~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 519 (806)
..+.|+.|.+.+|..+.+. .... ...++|+.|++.++ ....... .........+++|+.|.+..+..+.+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSP--LLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccch--hHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 3677888888877766652 2222 56788888888773 2222110 00111333457778888887765544322
Q ss_pred cccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccc
Q 003639 520 DRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNI 567 (806)
Q Consensus 520 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L 567 (806)
... ...+++|+.|.+.+|..+++..-......+++|++|++++|..+
T Consensus 262 ~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 SAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 211 12377888888888877665544445567788888888888776
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.68 E-value=1e-05 Score=80.36 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=113.8
Q ss_pred ccEEEEEeCCCCC--CCCC----CCCCCCccEEEecCCCCccccc-----------CCChhhhcCCCceEEEeecCCCcc
Q 003639 208 ECYAISLRGCSIH--ELPE----GLECPRLEFLHINPKDSLFDIN-----------NPCNFFTGMRKLRVVDFTRMQLLL 270 (806)
Q Consensus 208 ~lr~l~l~~~~~~--~l~~----~~~~~~Lr~L~l~~~~~~~~~~-----------~~~~~~~~l~~Lr~L~L~~~~i~~ 270 (806)
.++.++|+.|.+. .++. ...+..|+.|.+.+|.. +..- +-.....+-.+||++...+|.+..
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 5788888888762 2222 12477888888887642 1110 000112455678888888887765
Q ss_pred CC-----cccccccCCcEEEecCcCCCC------chhhcCCCccceEeccCCCCc-----ccChhccCCCcCCEEeccCC
Q 003639 271 LP-----SSIDLLVNLQTLCLVECMLDD------IAIIGKLKNLEILSFWGSGIV-----KLPEELGHLTKLRQLDLSNC 334 (806)
Q Consensus 271 lp-----~~l~~l~~L~~L~L~~~~l~~------~~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~ 334 (806)
-+ ..+...+.|+.+.++.|.+.. -..+..+++|+.|||..|.++ .+...+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 33 345667788888888887655 245678888888888888655 23444667778888888887
Q ss_pred ccccccC-----hhhhhcCCCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEEEEEecCCC
Q 003639 335 FKLKVIA-----PNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN 397 (806)
Q Consensus 335 ~~l~~~p-----~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~ 397 (806)
- ++.-. ...-...++|++|.+.+|.+. ..........+...+.|+.|++++|...
T Consensus 252 l-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt-------~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 L-LENEGAIAFVDALKESAPSLEVLELAGNEIT-------RDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred c-cccccHHHHHHHHhccCCCCceeccCcchhH-------HHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 5 43222 111234678888888888775 1222233344555777888888877653
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=1.3e-05 Score=77.68 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=9.8
Q ss_pred ccCCCcEEEeccCC
Q 003639 469 GFSQLKHLHVQNNP 482 (806)
Q Consensus 469 ~~~~L~~L~l~~~~ 482 (806)
-||++..+.+..|+
T Consensus 197 ~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP 210 (418)
T ss_pred hcccchheeeecCc
Confidence 37777777777665
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=5.2e-06 Score=70.93 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=37.3
Q ss_pred CCCceEEEeecCCCccCCccccc-ccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEecc
Q 003639 255 MRKLRVVDFTRMQLLLLPSSIDL-LVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLS 332 (806)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~l~~-l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 332 (806)
..+|...+|++|.+.++|+.+.. .+.+.+|++.+|.+++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 34444444444444444444322 2244444444444444 444444555555555544444444444444444444444
Q ss_pred CC
Q 003639 333 NC 334 (806)
Q Consensus 333 ~~ 334 (806)
++
T Consensus 132 ~n 133 (177)
T KOG4579|consen 132 EN 133 (177)
T ss_pred CC
Confidence 43
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.62 E-value=1.4e-06 Score=94.10 Aligned_cols=124 Identities=23% Similarity=0.177 Sum_probs=86.7
Q ss_pred cccEEEEEeCCCCCCCCCCCC-CCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEE
Q 003639 207 KECYAISLRGCSIHELPEGLE-CPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLC 285 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~l~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~ 285 (806)
..+...+.+.|.+..+..... ++.+++|+++.|. ..++ .++..+.+|++|||++|.+..+|..-..-.+|+.|+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhh----HHHHhcccccccccccchhccccccchhhhhheeee
Confidence 346677777777765554433 5788888888874 3433 245788888888888888888775322222388888
Q ss_pred ecCcCCCCchhhcCCCccceEeccCCCCcccCh--hccCCCcCCEEeccCCc
Q 003639 286 LVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE--ELGHLTKLRQLDLSNCF 335 (806)
Q Consensus 286 L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~ 335 (806)
+++|.++....+.+|++|+.||+++|-+..... -++.|..|+.|.+.||.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888887888888888888888885543221 25667778888888876
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00033 Score=64.46 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=43.3
Q ss_pred hcCCCceEEEeecCCCccCCcccc-cccCCcEEEecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCC
Q 003639 253 TGMRKLRVVDFTRMQLLLLPSSID-LLVNLQTLCLVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLT 324 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~ 324 (806)
..++.|.+|.+.+|.|+.+-+.+. .+++|.+|.|.+|++.+ ..-+..++.|++|.+-+|.++.-+. -+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 455555555555555555433332 23445555555555444 3444555566666666655543332 256667
Q ss_pred cCCEEeccC
Q 003639 325 KLRQLDLSN 333 (806)
Q Consensus 325 ~L~~L~l~~ 333 (806)
+|++||+.+
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 777776655
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=4.9e-05 Score=65.13 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=80.0
Q ss_pred cEEEEEeCCCCCCCCC----CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEE
Q 003639 209 CYAISLRGCSIHELPE----GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTL 284 (806)
Q Consensus 209 lr~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L 284 (806)
...+++++|.+-++++ ......|...++++|. ..++ |..|-.+++.+..|++.+|.+.++|..+..++.||.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3445666666655543 3455667777888773 5556 7777677778888888888888888888888888888
Q ss_pred EecCcCCCC-chhhcCCCccceEeccCCCCcccChh
Q 003639 285 CLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEE 319 (806)
Q Consensus 285 ~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~ 319 (806)
+++.|++.. |..|..|.+|-+|+..++.+..+|..
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888888776 88888888888888888877777764
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00056 Score=63.01 Aligned_cols=100 Identities=27% Similarity=0.366 Sum_probs=41.4
Q ss_pred cEEEecCcCCCCchhhcCCCccceEeccCCCCcccChhccC-CCcCCEEeccCCccccc---cChhhhhcCCCCCEEEee
Q 003639 282 QTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPEELGH-LTKLRQLDLSNCFKLKV---IAPNVISRLVRLEELYMS 357 (806)
Q Consensus 282 ~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~~l~~---~p~~~l~~L~~L~~L~l~ 357 (806)
..+||+.|.+...+.+..+..|.+|.+++|+|+.+-..+.. +++|+.|.+.+|+ +.. +.+ +..++.|++|.+-
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccceeeec
Confidence 33444444433333344444444444444444444333332 2334444444433 221 222 4444555555554
Q ss_pred cCcccccCCCCCchhhhccccccCCCCCCcEEEEE
Q 003639 358 NCFVEWDDEGPNSERINARLDELMHLPRLATLEVH 392 (806)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~ 392 (806)
+|.+. ....-..-.+.++++|+.|+..
T Consensus 122 ~Npv~--------~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNPVE--------HKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCchh--------cccCceeEEEEecCcceEeehh
Confidence 44332 0111223344555555555554
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=9.1e-05 Score=83.36 Aligned_cols=198 Identities=20% Similarity=0.193 Sum_probs=119.8
Q ss_pred CCCCccEEEEecCCCCCcccchhhhcccCcccEEEeecc-ccccchhcccCcccccccccccccccceEecCCCCCcccc
Q 003639 526 SFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINC-RNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSF 604 (806)
Q Consensus 526 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c-~~L~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~L~~l 604 (806)
.++.|+.|.+..|..+....-.......+.|+.|++.+| ......... .......+++|+.|++++|..++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCch
Confidence 478999999999988887432345678899999999884 222111100 0012335578888888888654332
Q ss_pred ccCCcccccccCcccccccccccccccccccccccccccccCCcceeeecce-eeeecCCCCCcccccccCCCccEEEEe
Q 003639 605 CCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKV-NIEKIWPNQLPVAMFLCFQNLTRLILR 683 (806)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~l~~i~~~~~~~~~~~~l~~L~~L~l~ 683 (806)
.. ......+++|+.|.+.+| .+++- ++. .....+++|++|+|+
T Consensus 260 ~l--------------------------------~~l~~~c~~L~~L~l~~c~~lt~~---gl~-~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 260 GL--------------------------------SALASRCPNLETLSLSNCSNLTDE---GLV-SIAERCPSLRELDLS 303 (482)
T ss_pred hH--------------------------------HHHHhhCCCcceEccCCCCccchh---HHH-HHHHhcCcccEEeee
Confidence 11 011223789999998888 44432 110 012467889999999
Q ss_pred cCCCcceecchhhHhhhcccceEEEeccc---ccceeeccccccCCCCCcccc-cccccccccccccccccCCCCCcCCC
Q 003639 684 KCPKLKYIFSASMLGSFEHLQHLEIRHCK---GLQEIISKEGADDHVPPNFVF-LQVTTLILLGLPELKCLYPGMHTSEW 759 (806)
Q Consensus 684 ~C~~L~~l~~~~~~~~l~~L~~L~i~~C~---~L~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~l 759 (806)
.|..++.-.......++++|+.|.+..+. .++......... .. -.+..+.+.+|++++.+..... . .
T Consensus 304 ~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~-------~~~d~~~~~~~~~~~~l~~~~l~~~-~-~ 374 (482)
T KOG1947|consen 304 GCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT-------LTSDDLAELILRSCPKLTDLSLSYC-G-I 374 (482)
T ss_pred cCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc-------cCchhHhHHHHhcCCCcchhhhhhh-h-c
Confidence 99988553223445667777776655543 455442111000 12 2688889999999988765421 1 2
Q ss_pred CCcC-EEeEecCCCce
Q 003639 760 PALK-LLDVSACDQVT 774 (806)
Q Consensus 760 ~sL~-~L~i~~C~~L~ 774 (806)
.... .+.+.+||+++
T Consensus 375 ~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 375 SDLGLELSLRGCPNLT 390 (482)
T ss_pred cCcchHHHhcCCcccc
Confidence 3333 57778899883
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.0017 Score=62.55 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=44.0
Q ss_pred cCCCceEEEeecCCCcc-----CCcccccccCCcEEEecCcCC---CC--c-------hhhcCCCccceEeccCCCCc-c
Q 003639 254 GMRKLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECML---DD--I-------AIIGKLKNLEILSFWGSGIV-K 315 (806)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l---~~--~-------~~i~~L~~L~~L~L~~~~l~-~ 315 (806)
-+..+..++||+|.|.. +...|.+-.+|++.+++.-.. .+ + +.+-++++|+..+||.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35566666666666543 334455556666666654321 11 1 33455666666666666333 2
Q ss_pred cCh----hccCCCcCCEEeccCCc
Q 003639 316 LPE----ELGHLTKLRQLDLSNCF 335 (806)
Q Consensus 316 lp~----~i~~L~~L~~L~l~~~~ 335 (806)
.|. -|.+-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 332 25555666666666654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00012 Score=70.45 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=44.1
Q ss_pred CCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCCchhhcCCCccceEeccCCCCcccCh--hccCCCcCCEEecc
Q 003639 255 MRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDDIAIIGKLKNLEILSFWGSGIVKLPE--ELGHLTKLRQLDLS 332 (806)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~~~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~ 332 (806)
+.+.+.|++-||++.++. ...+++.|++|.|+-|+|+....+..+++|+.|+|..|.|..+-+ -+.++++|+.|-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445555666666655542 233556666666666666665556666666666666665554432 24455555555555
Q ss_pred CCc
Q 003639 333 NCF 335 (806)
Q Consensus 333 ~~~ 335 (806)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.00028 Score=67.99 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC---chhhcCCCccce
Q 003639 229 PRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD---IAIIGKLKNLEI 305 (806)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~---~~~i~~L~~L~~ 305 (806)
.+.+.|++.|+. +.+| ++..+|+.|.+|.|+-|.|+.+- .+..|++|+.|+|+.|.|.+ ..-+.++++|+.
T Consensus 19 ~~vkKLNcwg~~-L~DI----sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDI----SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCC-ccHH----HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 344455555542 2222 33455555555555555555542 34455555555555555544 333445555555
Q ss_pred EeccCC
Q 003639 306 LSFWGS 311 (806)
Q Consensus 306 L~L~~~ 311 (806)
|-|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.20 E-value=0.0017 Score=62.74 Aligned_cols=102 Identities=25% Similarity=0.313 Sum_probs=52.1
Q ss_pred hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcC--CCC--chhhcCCCccceEeccCCCCcccC--hhccCCCcC
Q 003639 253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECM--LDD--IAIIGKLKNLEILSFWGSGIVKLP--EELGHLTKL 326 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~--l~~--~~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L 326 (806)
..+..|..|++.+..++.+- .+..|++|++|.++.|. +.. +....++++|++|++++|+|+-+. ..+.++.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 44555555555555544421 23356677777777773 333 333344577777777777554211 124555666
Q ss_pred CEEeccCCcccc--ccChhhhhcCCCCCEEE
Q 003639 327 RQLDLSNCFKLK--VIAPNVISRLVRLEELY 355 (806)
Q Consensus 327 ~~L~l~~~~~l~--~~p~~~l~~L~~L~~L~ 355 (806)
..|++.+|.... .--..++.-+++|.+|+
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 666666665221 11122344455555554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.0038 Score=60.35 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=50.5
Q ss_pred cccEEEEEeCCCCCCCCCCCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCcc-CCcccccccCCcEEE
Q 003639 207 KECYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLC 285 (806)
Q Consensus 207 ~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~L~~L~ 285 (806)
..+.++++.+..+..+..+..+++|+.|.++.|.. .+.. ++-....+++|++|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~-------------------------~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYR-------------------------RVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcc-------------------------cccccceehhhhCCceeEEe
Confidence 34555555555555554444555555555555421 2221 222233345555555
Q ss_pred ecCcCCCC---chhhcCCCccceEeccCCCCcccCh----hccCCCcCCEEeccCC
Q 003639 286 LVECMLDD---IAIIGKLKNLEILSFWGSGIVKLPE----ELGHLTKLRQLDLSNC 334 (806)
Q Consensus 286 L~~~~l~~---~~~i~~L~~L~~L~L~~~~l~~lp~----~i~~L~~L~~L~l~~~ 334 (806)
+++|++.. ...+.++.+|..|++..|..+.+-. -+.-+++|.+|+-..+
T Consensus 98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 55555433 2334455555566666654443321 2555677777765553
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.0037 Score=35.74 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=12.8
Q ss_pred ccceEeccCCCCcccChhccC
Q 003639 302 NLEILSFWGSGIVKLPEELGH 322 (806)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~i~~ 322 (806)
+|++||+++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665544
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.78 E-value=0.037 Score=49.20 Aligned_cols=117 Identities=15% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCCCCCccEEEecCCCCcccccCCChhhhcCCCceEEEeecCCCccCCc-ccccccCCcEEEecCcCCCC--chhhcCCC
Q 003639 225 GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPS-SIDLLVNLQTLCLVECMLDD--IAIIGKLK 301 (806)
Q Consensus 225 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~l~~--~~~i~~L~ 301 (806)
+.++++|+.+.+.. ....+ ....|..+..|+.+.+.++ +..++. .+.++..|+.+.+.. .+.. ...+..++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I--~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKI--GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS--T--EE---TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC--CeeEe--Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455566666553 23344 4445566666666666553 444332 345555566666644 2222 33445555
Q ss_pred ccceEeccCCCCcccChh-ccCCCcCCEEeccCCccccccChhhhhcCCCC
Q 003639 302 NLEILSFWGSGIVKLPEE-LGHLTKLRQLDLSNCFKLKVIAPNVISRLVRL 351 (806)
Q Consensus 302 ~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L 351 (806)
+|+.+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6666665443 4444332 4444 555555543 2444444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.0091 Score=34.13 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=11.0
Q ss_pred ceEEEeecCCCccCCcccc
Q 003639 258 LRVVDFTRMQLLLLPSSID 276 (806)
Q Consensus 258 Lr~L~L~~~~i~~lp~~l~ 276 (806)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666655555543
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.79 E-value=0.099 Score=46.38 Aligned_cols=105 Identities=16% Similarity=0.294 Sum_probs=63.4
Q ss_pred CChhhhcCCCceEEEeecCCCccCC-cccccccCCcEEEecCcCCCC--chhhcCCCccceEeccCCCCcccChh-ccCC
Q 003639 248 PCNFFTGMRKLRVVDFTRMQLLLLP-SSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLPEE-LGHL 323 (806)
Q Consensus 248 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L 323 (806)
+...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +.. ...+.++++|+.+.+.. .+..++.. +..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 556678899999999875 566655 45778888999999875 655 45678888899999976 55555543 6678
Q ss_pred CcCCEEeccCCccccccChhhhhcCCCCCEEEeec
Q 003639 324 TKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSN 358 (806)
Q Consensus 324 ~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~ 358 (806)
++|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 89998888652 667776667776 888887654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0075 Score=55.89 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=6.6
Q ss_pred cccceEEEecccccc
Q 003639 701 EHLQHLEIRHCKGLQ 715 (806)
Q Consensus 701 ~~L~~L~i~~C~~L~ 715 (806)
++|+.|+|++|+.++
T Consensus 151 ~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRIT 165 (221)
T ss_pred cchheeeccCCCeec
Confidence 344444444444443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.0099 Score=55.13 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=44.1
Q ss_pred CCCcceEEecccccccccccccccccCCCCCccEEEEecCCCCCcccchhhhcccCcccEEEeeccccc
Q 003639 499 AFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNI 567 (806)
Q Consensus 499 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~L 567 (806)
.++.++.|.+.+|.++.+|+...... ..|+|+.|+|++|+++++- ....+..+++|+.|.+.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 35566677777777777766544332 5778888888888887765 2245566777777777765544
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.09 E-value=0.06 Score=52.29 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=55.7
Q ss_pred CCCCCCccEEEecCCCCcccccCCC---hhhhcCCCceEEEeecCCCccCCc--------------ccccccCCcEEEec
Q 003639 225 GLECPRLEFLHINPKDSLFDINNPC---NFFTGMRKLRVVDFTRMQLLLLPS--------------SIDLLVNLQTLCLV 287 (806)
Q Consensus 225 ~~~~~~Lr~L~l~~~~~~~~~~~~~---~~~~~l~~Lr~L~L~~~~i~~lp~--------------~l~~l~~L~~L~L~ 287 (806)
..+|++|+..+++.|..-... |. .++++-..|.+|.+++|.+..+.. -..+-+.|++....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~--~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEF--PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HhcCCcceeeeccccccCccc--chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456777777777777544333 32 345666777777777776543211 11234456666666
Q ss_pred CcCCCC-chh-----hcCCCccceEeccCCCCcc-----c-ChhccCCCcCCEEeccCCc
Q 003639 288 ECMLDD-IAI-----IGKLKNLEILSFWGSGIVK-----L-PEELGHLTKLRQLDLSNCF 335 (806)
Q Consensus 288 ~~~l~~-~~~-----i~~L~~L~~L~L~~~~l~~-----l-p~~i~~L~~L~~L~l~~~~ 335 (806)
.|++.. +.. +..-.+|.++.+..|.|.. + -.++..+++|+.|++..|.
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 665544 211 1112355555555554431 0 1123344555555555544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.65 E-value=0.044 Score=28.95 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=6.3
Q ss_pred ccceEeccCCCCcccC
Q 003639 302 NLEILSFWGSGIVKLP 317 (806)
Q Consensus 302 ~L~~L~L~~~~l~~lp 317 (806)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.44 E-value=1.6 Score=53.45 Aligned_cols=150 Identities=17% Similarity=0.255 Sum_probs=94.7
Q ss_pred eeeCC----CCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCC
Q 003639 6 NFSID----ILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVN 81 (806)
Q Consensus 6 ~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~ 81 (806)
..+++ +++.+|+.++|....+..- . .+...+|.+.|+|.|+++..++..++..... -......+. .
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~-----~ 245 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLA-----G 245 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCC-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhc-----C
Confidence 45566 8999999999987664321 1 3456789999999999999998877544210 011111111 0
Q ss_pred CCCCchhhHhHHHH-hhccCCchhHHHHHHHHhhcCCCCChhHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhcccc
Q 003639 82 FEGVPAEAYSTIEL-SFKNLKGEQLKKIFMLCSLLGNSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVHELRDSCLL 160 (806)
Q Consensus 82 ~~~~~~~i~~~L~l-sY~~L~~~~lk~cfl~~s~fp~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~~L~~~~l~ 160 (806)
....++...+.- -|+.||++ .+.-+...|+++ .|+.+ +...-. | .++++ +.+++|.+++++
T Consensus 246 --~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~~-l~~~l~--~-------~~~~~----~~L~~l~~~~l~ 307 (903)
T PRK04841 246 --INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-SMNDA-LIVRVT--G-------EENGQ----MRLEELERQGLF 307 (903)
T ss_pred --CCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-cCCHH-HHHHHc--C-------CCcHH----HHHHHHHHCCCe
Confidence 011234444333 37899998 799999999997 55533 222111 1 11122 348889999986
Q ss_pred cc-cC-CCCceeecHHHHHHHHHHH
Q 003639 161 LE-GD-SNQELSMHDVIRDVAISIA 183 (806)
Q Consensus 161 ~~-~~-~~~~~~mHdli~~l~~~~~ 183 (806)
.. .+ ....|+.|++++++.....
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHH
Confidence 53 33 3346889999999988765
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.36 E-value=0.0069 Score=57.16 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=58.5
Q ss_pred hcCCCceEEEeecCCCccCCcccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEec
Q 003639 253 TGMRKLRVVDFTRMQLLLLPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDL 331 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 331 (806)
..++.-++||++.|.+..+-..++.+..|..|+++.+.+.. |.+++.+..++++++..|+.+.+|.++++++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 55666677777777666666666667777777777766666 77777777777777777777777777777777777777
Q ss_pred cCCc
Q 003639 332 SNCF 335 (806)
Q Consensus 332 ~~~~ 335 (806)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6654
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.61 E-value=0.096 Score=27.67 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=5.5
Q ss_pred CceEEEeecCCCccC
Q 003639 257 KLRVVDFTRMQLLLL 271 (806)
Q Consensus 257 ~Lr~L~L~~~~i~~l 271 (806)
+||.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.56 E-value=0.0072 Score=57.00 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=76.6
Q ss_pred cCC-cccccccCCcEEEecCcCCCC-chhhcCCCccceEeccCCCCcccChhccCCCcCCEEeccCCccccccChhhhhc
Q 003639 270 LLP-SSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIVKLPEELGHLTKLRQLDLSNCFKLKVIAPNVISR 347 (806)
Q Consensus 270 ~lp-~~l~~l~~L~~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~ 347 (806)
.+| ..+.....-.+||++.+.+.. -..++.++.|..|+++.+.+..+|..++.+..+++++++.|. ....|.+ .++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k 109 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKK 109 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccc
Confidence 344 356678889999999998777 677888999999999999999999999999999999988765 8889987 899
Q ss_pred CCCCCEEEeecCcc
Q 003639 348 LVRLEELYMSNCFV 361 (806)
Q Consensus 348 L~~L~~L~l~~~~~ 361 (806)
++.+++++..++.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 99999998877654
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.02 E-value=0.32 Score=29.01 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.9
Q ss_pred CCccceEeccCCCCcccChh
Q 003639 300 LKNLEILSFWGSGIVKLPEE 319 (806)
Q Consensus 300 L~~L~~L~L~~~~l~~lp~~ 319 (806)
|++|++|+|++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.02 E-value=0.32 Score=29.01 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.9
Q ss_pred CCccceEeccCCCCcccChh
Q 003639 300 LKNLEILSFWGSGIVKLPEE 319 (806)
Q Consensus 300 L~~L~~L~L~~~~l~~lp~~ 319 (806)
|++|++|+|++|.++.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666654
No 83
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.06 E-value=2.9 Score=44.05 Aligned_cols=135 Identities=12% Similarity=0.117 Sum_probs=75.1
Q ss_pred cceeeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCCC
Q 003639 4 QKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFE 83 (806)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~~~ 83 (806)
+..+++++++.+|..+++.+.++... ..--.+....|++.|+|.|=.+..+...+ ..|..+.+. . ... .
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~-~---~I~-~ 240 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGD-G---VIT-K 240 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCC-C---CCC-H
Confidence 34689999999999999999983211 11223678899999999994443333322 223222100 0 111 1
Q ss_pred CCchhhHhHHHHhhccCCchhHHHHHH-HHhhcC-CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHH-HHHhcccc
Q 003639 84 GVPAEAYSTIELSFKNLKGEQLKKIFM-LCSLLG-NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVH-ELRDSCLL 160 (806)
Q Consensus 84 ~~~~~i~~~L~lsY~~L~~~~lk~cfl-~~s~fp-~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~-~L~~~~l~ 160 (806)
....+.+..+...|..|+..+ +.-+. ....|+ ..+..+.+...+ -. +.+.+++. ++ .|++.+|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-----g~---~~~~~~~~----~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-----GE---ERDTIEDV----YEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-----CC---CcchHHHH----hhHHHHHcCCc
Confidence 111234556667778888764 44443 556666 455555543332 11 11223322 44 57888888
Q ss_pred cc
Q 003639 161 LE 162 (806)
Q Consensus 161 ~~ 162 (806)
+.
T Consensus 308 ~~ 309 (328)
T PRK00080 308 QR 309 (328)
T ss_pred cc
Confidence 63
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.98 E-value=0.66 Score=27.67 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=12.5
Q ss_pred CCCcCEEeEecCCCce
Q 003639 759 WPALKLLDVSACDQVT 774 (806)
Q Consensus 759 l~sL~~L~i~~C~~L~ 774 (806)
|++|++|++++|++++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888888774
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.11 E-value=0.94 Score=26.92 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCceEEEeecCCCccCCcc
Q 003639 256 RKLRVVDFTRMQLLLLPSS 274 (806)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~ 274 (806)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.11 E-value=0.94 Score=26.92 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCceEEEeecCCCccCCcc
Q 003639 256 RKLRVVDFTRMQLLLLPSS 274 (806)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~ 274 (806)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 87
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=82.00 E-value=4.6 Score=42.07 Aligned_cols=135 Identities=14% Similarity=0.109 Sum_probs=73.3
Q ss_pred cceeeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHccCChhHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCCC
Q 003639 4 QKNFSIDILNEEEAWRLFKLVADDHVENREFKSTATEVAQACKGLPIALTTIARALRNKSVPEWKSALQELRMPSEVNFE 83 (806)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L~~~~~~~W~~~l~~~~~~~~~~~~ 83 (806)
...+++++++.+|..+++.+.|+.... .--.+....|++.|+|.|-.+..++..+ |..+. ... ..... .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~-~~~it-~ 219 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRG-QKIIN-R 219 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcC-CCCcC-H
Confidence 346899999999999999999832111 1124567889999999995554444432 22111 000 00010 0
Q ss_pred CCchhhHhHHHHhhccCCchhHHHHHH-HHhhcC-CCCChhHHHHHhhhcccccccccHHHHHHHHHHHHH-HHHhcccc
Q 003639 84 GVPAEAYSTIELSFKNLKGEQLKKIFM-LCSLLG-NSICTSYLFQCCMGLGILQKVNKLEDARNKLYALVH-ELRDSCLL 160 (806)
Q Consensus 84 ~~~~~i~~~L~lsY~~L~~~~lk~cfl-~~s~fp-~~i~~~~li~~wiaeG~i~~~~~~e~~~~~~~~~~~-~L~~~~l~ 160 (806)
....+++..+...|..++.++ +.-+. ..+.+. ..+..+++.... |. +...++. .++ .|++++++
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~~~~~~~----~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEID-RKLLSVLIEQFQGGPVGLKTLAAAL---GE-----DADTIED----VYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCCCcccHHHHHHHh---CC-----CcchHHH----hhhHHHHHcCCc
Confidence 111223334566788888874 44333 455565 444444433332 11 1122332 256 58999999
Q ss_pred cc
Q 003639 161 LE 162 (806)
Q Consensus 161 ~~ 162 (806)
+.
T Consensus 287 ~~ 288 (305)
T TIGR00635 287 QR 288 (305)
T ss_pred cc
Confidence 63
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.62 E-value=8.3 Score=39.20 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=43.8
Q ss_pred cceeeCCCCCHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHHccCChhHHHHHHHHh
Q 003639 4 QKNFSIDILNEEEAWRLFKLVA---DDHVENREFKSTATEVAQACKGLPIALTTIARAL 59 (806)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~i~~kc~glPLai~~ig~~L 59 (806)
...+++++++.+|..+++...+ +......=-.+..+.|++.++|.|..|..++..+
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3467899999999999998877 2211112235788999999999999999998887
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=68.97 E-value=1.2 Score=25.92 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=4.5
Q ss_pred CCcEEEecCcCC
Q 003639 280 NLQTLCLVECML 291 (806)
Q Consensus 280 ~L~~L~L~~~~l 291 (806)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.28 E-value=3.7 Score=24.42 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=13.0
Q ss_pred CccceEeccCCCCcccCh
Q 003639 301 KNLEILSFWGSGIVKLPE 318 (806)
Q Consensus 301 ~~L~~L~L~~~~l~~lp~ 318 (806)
.+|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.51 E-value=6.4 Score=23.52 Aligned_cols=17 Identities=41% Similarity=0.454 Sum_probs=9.7
Q ss_pred CCccceEeccCCCCccc
Q 003639 300 LKNLEILSFWGSGIVKL 316 (806)
Q Consensus 300 L~~L~~L~L~~~~l~~l 316 (806)
+++|+.|+++.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 34566666666655443
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.95 E-value=0.61 Score=51.33 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=60.1
Q ss_pred CceEEEeecCCCcc-----CCcccccccCCcEEEecCcCCCC------chhh----cCCCccceEeccCCCCcc-----c
Q 003639 257 KLRVVDFTRMQLLL-----LPSSIDLLVNLQTLCLVECMLDD------IAII----GKLKNLEILSFWGSGIVK-----L 316 (806)
Q Consensus 257 ~Lr~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~l~~------~~~i----~~L~~L~~L~L~~~~l~~-----l 316 (806)
.+++|++..|.++. +...+....+++.++++.|.+.. +..+ ....++++|++++|.++. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34444444444432 33344445555555555555321 1222 235556666666554431 1
Q ss_pred ChhccCCCc-CCEEeccCCccccc-----cChhhhhcC-CCCCEEEeecCcccccCCCCCchhhhccccccCCCCCCcEE
Q 003639 317 PEELGHLTK-LRQLDLSNCFKLKV-----IAPNVISRL-VRLEELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATL 389 (806)
Q Consensus 317 p~~i~~L~~-L~~L~l~~~~~l~~-----~p~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L 389 (806)
-..+...++ ++.|++..|. +.. +.+. +..+ ..+++++++.|.+. ..........+...+.++.+
T Consensus 225 ~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~-------~~~~~~L~~~l~~~~~l~~l 295 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNK-LGDVGVEKLLPC-LSVLSETLRVLDLSRNSIT-------EKGVRDLAEVLVSCRQLEEL 295 (478)
T ss_pred HHHHhccchhhHHHHHHhcC-cchHHHHHHHHH-hcccchhhhhhhhhcCCcc-------ccchHHHHHHHhhhHHHHHh
Confidence 112333334 4445555543 221 1221 3334 45566666666654 11222333445555566666
Q ss_pred EEEecCCC
Q 003639 390 EVHVKNDN 397 (806)
Q Consensus 390 ~l~~~~~~ 397 (806)
.+..+...
T Consensus 296 ~l~~n~l~ 303 (478)
T KOG4308|consen 296 SLSNNPLT 303 (478)
T ss_pred hcccCccc
Confidence 66655543
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.97 E-value=19 Score=21.77 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=8.6
Q ss_pred cCCcEEEecCcCCCC
Q 003639 279 VNLQTLCLVECMLDD 293 (806)
Q Consensus 279 ~~L~~L~L~~~~l~~ 293 (806)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666665543
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=27.11 E-value=3.1 Score=45.92 Aligned_cols=110 Identities=26% Similarity=0.272 Sum_probs=76.5
Q ss_pred hcCCCceEEEeecCCCcc-----CCcccc----cccCCcEEEecCcCCCCc------hhhcCCCc-cceEeccCCCCc--
Q 003639 253 TGMRKLRVVDFTRMQLLL-----LPSSID----LLVNLQTLCLVECMLDDI------AIIGKLKN-LEILSFWGSGIV-- 314 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~-----lp~~l~----~l~~L~~L~L~~~~l~~~------~~i~~L~~-L~~L~L~~~~l~-- 314 (806)
....+++.++++.|.+.. ++..+. ...++++|++.+|.++.+ ..+..... ++.|++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 457888888888887642 333333 578899999999987752 34556666 777999988654
Q ss_pred ---ccChhccCC-CcCCEEeccCCccccccCh---hhhhcCCCCCEEEeecCccc
Q 003639 315 ---KLPEELGHL-TKLRQLDLSNCFKLKVIAP---NVISRLVRLEELYMSNCFVE 362 (806)
Q Consensus 315 ---~lp~~i~~L-~~L~~L~l~~~~~l~~~p~---~~l~~L~~L~~L~l~~~~~~ 362 (806)
.+.+.+..+ ..++++++..|+....-.. ..+.....+++|.++.+.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 345556666 7889999999873322211 22556678999999888765
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=26.48 E-value=1.5e+02 Score=29.26 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=35.6
Q ss_pred CcceeeCCCCCHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHccCChhHH
Q 003639 3 SQKNFSIDILNEEEAWRLFKLVA-DDHVENREFKSTATEVAQACKGLPIAL 52 (806)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~a-~~~~~~~~~~~~~~~i~~kc~glPLai 52 (806)
.+.+++++++++++.+++++++| .... .--+++.+-|++.+.|-.-++
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTL 200 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHH
Confidence 45689999999999999999999 2221 122577888999988765333
No 96
>PF14164 YqzH: YqzH-like protein
Probab=23.29 E-value=1.3e+02 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=27.4
Q ss_pred eCCCCCHHHHHHHHHHhh--CCCCCChhhHHHHHHHH
Q 003639 8 SIDILNEEEAWRLFKLVA--DDHVENREFKSTATEVA 42 (806)
Q Consensus 8 ~l~~L~~~~~~~Lf~~~a--~~~~~~~~~~~~~~~i~ 42 (806)
+..||+++|-..|+.+.+ .......++-++...||
T Consensus 22 ~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvV 58 (64)
T PF14164_consen 22 ECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVEDVV 58 (64)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 788999999999988877 45566677777777665
No 97
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=23.10 E-value=6.3e+02 Score=27.09 Aligned_cols=137 Identities=11% Similarity=0.172 Sum_probs=75.9
Q ss_pred ceeeCCCCCHHHHHHHHHHhh-C---CCC-CChhhHHHHHHHHHHccCChhHHHHHHHHh-----cCC---ChhHHHHHH
Q 003639 5 KNFSIDILNEEEAWRLFKLVA-D---DHV-ENREFKSTATEVAQACKGLPIALTTIARAL-----RNK---SVPEWKSAL 71 (806)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a-~---~~~-~~~~~~~~~~~i~~kc~glPLai~~ig~~L-----~~~---~~~~W~~~l 71 (806)
..+.+++++.++..+++...+ . ... .++.++.+++.++...+..+.|+.++-... +++ +.++++.+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 356899999999999999987 2 112 233444445544444566888887764322 111 556677666
Q ss_pred HHhcCCCCCCCCCCchhhHhHHHHhhccCCchhHHHHHHHHhh--cC---CCCChhHHHHH--hhhcccccccccHHHHH
Q 003639 72 QELRMPSEVNFEGVPAEAYSTIELSFKNLKGEQLKKIFMLCSL--LG---NSICTSYLFQC--CMGLGILQKVNKLEDAR 144 (806)
Q Consensus 72 ~~~~~~~~~~~~~~~~~i~~~L~lsY~~L~~~~lk~cfl~~s~--fp---~~i~~~~li~~--wiaeG~i~~~~~~e~~~ 144 (806)
+... .....-.+..||.+ ++.|++.-. .. ..+...++... .+++.+-... -..
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~----~~~ 339 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP----RTH 339 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc----CcH
Confidence 6532 11334568899997 677776422 11 23444444422 2221110000 012
Q ss_pred HHHHHHHHHHHhccccc
Q 003639 145 NKLYALVHELRDSCLLL 161 (806)
Q Consensus 145 ~~~~~~~~~L~~~~l~~ 161 (806)
+.+.+++++|.+.+++.
T Consensus 340 ~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 340 TRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHHHHHHHHHhcCCeE
Confidence 33455688888888876
Done!