Query 003639
Match_columns 806
No_of_seqs 315 out of 3842
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 18:02:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003639.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1689-1693//hhsearch_pdb/003639hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 286.0 35.5 513 190-777 16-562 (606)
2 3rgz_A Protein brassinosteroid 1.0 1 1 282.9 28.7 319 253-607 220-557 (768)
3 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 281.1 32.1 511 209-793 13-553 (606)
4 3rgz_A Protein brassinosteroid 1.0 1 1 279.3 28.9 103 671-786 628-731 (768)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 277.0 36.3 156 203-362 29-192 (606)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 276.9 37.6 538 196-792 15-616 (680)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 272.3 35.5 538 210-793 7-592 (680)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 268.0 36.1 498 190-773 9-560 (844)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 265.3 33.7 520 209-793 14-555 (606)
10 2z63_A TOLL-like receptor 4, v 1.0 1 1 260.3 34.1 488 192-778 14-536 (570)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=286.03 Aligned_cols=513 Identities=18% Similarity=0.143 Sum_probs=296.4
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCC
Q ss_conf 89417666898962223661799970789987899--8999973399936899844445987023169972499953698
Q 003639 190 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQ 267 (806)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 267 (806)
+...+......+ ..++.++++++++++.+..++. +..+++|++|++.+|... .+ +...|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~~ip-~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i--~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVP-DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TI--EDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCC-TTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EE--CTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCCCCCC-CCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC-CC--CHHHHHCHHHCCEEECCCCC
T ss_conf 574688845189-888887678878889757737545557766748868877366-43--97773060106886787985
Q ss_pred CCCC-CCCCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCC--CCCHHCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 8658-7000045687589805767899--100027776546861378886--3471105999678992568765542390
Q 003639 268 LLLL-PSSIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIV--KLPEELGHLTKLRQLDLSNCFKLKVIAP 342 (806)
Q Consensus 268 i~~l-p~~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 342 (806)
+..+ |..++.+++|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITV 170 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC-CEECCH
T ss_conf 6304852207865378887037755544511348988779896878852325306867326777788766885-310573
Q ss_pred HHHHCCCCCC----EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCC--CCCCCCC-CCCCCEEEEEE
Q ss_conf 4440487897----998006854546799982110003201389999858999962898--6784102-23443588854
Q 003639 343 NVISRLVRLE----ELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDN--VLPEGFF-ARKLERLSWAL 415 (806)
Q Consensus 343 ~~l~~L~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~-~~~L~~L~~~~ 415 (806)
..++.+.+|+ .|+++++.+.. .........+|+.|+++++... ..+..+. +..++.+.+.+
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~------------~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDF------------IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCE------------ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred HHHHHHHCCCCCCCEEECCCCCCCE------------ECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 3412120342002430046897532------------5711056760433524678561667788860266565231411
Q ss_pred EECCC----------------CCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEE
Q ss_conf 21376----------------23315789403-86312445554434300642045578001200246345588867772
Q 003639 416 FAIDD----------------HETMRTLKLKL-NSVSICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHV 478 (806)
Q Consensus 416 ~~~~~----------------~~~l~~l~l~~-~~~~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l 478 (806)
..... .-.++.+.+.. .........+..+++++.|+++++.. ...+ .+ ..+++|++|++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l--~~~~~L~~L~l 314 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DV--PKHFKWQSLSI 314 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CC--CTTCCCSEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC-HHHH-HC--CCCCCCCEEEC
T ss_conf 11036774102681776666543474501236655554322235488789877147660-4435-43--34011778976
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CHHHHCCCCCCC
Q ss_conf 1689830875388888889988852087502322222112243465788986589992699988325-613330268663
Q 003639 479 QNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIF-LLSAAKCLPRLE 557 (806)
Q Consensus 479 ~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~ 557 (806)
.+|.. ..++ .. .+++|+.|++.++.....+ ....+++|+.|++.+ +.++... ....+..+++|+
T Consensus 315 ~~n~l-~~lp-------~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 315 IRCQL-KQFP-------TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp ESCCC-SSCC-------CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCC
T ss_pred CCCCC-CCCC-------CC-CCCCCCEEECCCCCCCCCH-----HHCCCCCCCEEECCC-CCCCCCCCHHHHHCCCCCCC
T ss_conf 46667-6546-------67-8875564454478685310-----002489888797758-73687752012214677554
Q ss_pred EEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89860144631000235765413555101465365864988884312469842112358655445433343211234421
Q 003639 558 RIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSA 637 (806)
Q Consensus 558 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (806)
+|++++|. +..++ ..+..+++|+.|+++++.-....+...... ...+.... ...... ...
T Consensus 380 ~L~L~~n~-l~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~---l~~n~l----~~~ 439 (606)
T 3vq2_A 380 HLDLSFNG-AIIMS----------ANFMGLEELQHLDFQHSTLKRVTEFSAFLS--LEKLLYLD---ISYTNT----KID 439 (606)
T ss_dssp EEECCSCS-EEEEC----------CCCTTCTTCCEEECTTSEEESTTTTTTTTT--CTTCCEEE---CTTSCC----EEC
T ss_pred EEECCCCC-CCCCH----------HHCCCCCCCCEEECCCCCCCCCCCHHHHHC--CCCCCEEE---CCCCCC----CCC
T ss_conf 86788995-30005----------540688888965898870587537645646--21378898---968978----743
Q ss_pred CCCCCCCCCCCCEEEECCEEEEE-CCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf 22221135875545600000022-38999841100248775399871389852425410574302456488804544440
Q 003639 638 LFNEKVALSNLEVLEMNKVNIEK-IWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQE 716 (806)
Q Consensus 638 ~~~~~~~l~~L~~L~i~~~~l~~-~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 716 (806)
....+..+++|+.|++++|.+.. +.+.. |..+++|++|++++| +++.++ ...+..+++|++|++++| .+..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~ 511 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNV-----FANTTNLTFLDLSKC-QLEQIS-WGVFDTLHRLQLLNMSHN-NLLF 511 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSC-----CTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCSC
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHH-----HCCCCCCCEEECCCC-CCCCCC-HHHHCCCCCCCEEECCCC-CCCC
T ss_conf 35553477878989898983798546776-----045788998989888-577648-656154646898989899-5787
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCCCEEEC
Q ss_conf 20356655789994113344600125565655337998868899-85789683299824614
Q 003639 717 IISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWP-ALKLLDVSACDQVTVFD 777 (806)
Q Consensus 717 i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~-sL~~L~i~~C~~l~~lp 777 (806)
+. +.... .+++|+.|++++| .++.+|.+ +..++ +|+.|++.++|-...-+
T Consensus 512 ~~-~~~~~-------~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 512 LD-SSHYN-------QLYSLSTLDCSFN-RIETSKGI--LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EE-GGGTT-------TCTTCCEEECTTS-CCCCEESC--GGGSCTTCCEEECCSCCCCCSST
T ss_pred CC-HHHCC-------CCCCCCEEECCCC-CCCCCCHH--HHHHCCCCCEEECCCCCCCCCCC
T ss_conf 48-77706-------8876898889898-37666876--75210217488762898664776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=282.86 Aligned_cols=319 Identities=19% Similarity=0.105 Sum_probs=143.0
Q ss_pred HCCCCCEEEEEECCCCCC-CCCCCCCCCCCCEEEECCCCCCC-CHHHCCCCCCCEEECCCCCCC-CCCHHCCCC-CCCCE
Q ss_conf 169972499953698865-87000045687589805767899-100027776546861378886-347110599-96789
Q 003639 253 TGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLVECMLDD-IAIIGKLKNLEILSFWGSGIV-KLPEELGHL-TKLRQ 328 (806)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L~~~~l~~-~~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L-~~L~~ 328 (806)
.++++|++|++++|.+.. +|..++.+++|++|++++|.+.. .+.. .+++|++|++++|.+. .+|..+..+ ++|++
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCE
T ss_conf 26999998979488587816577744888898989888665716724-36878989791785577258888844686889
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCC-CCCCCCCCCEEEEEECCCC-CCCCCCC-C
Q ss_conf 92568765542390444048789799800685454679998211000320-1389999858999962898-6784102-2
Q 003639 329 LDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDDEGPNSERINARLD-ELMHLPRLATLEVHVKNDN-VLPEGFF-A 405 (806)
Q Consensus 329 L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~-~~~~~~~-~ 405 (806)
|++++|.....+|.. ++++++|++|++++|.+.. .... .+..+++|+.|+++++... .+|..+. +
T Consensus 299 L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~-----------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG-----------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp EECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE-----------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred EECCCCCCCCCCCHH-HHCCCCCCEEECCCCCCCC-----------CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 989689677842367-7558776677897885257-----------3797887248888788484784376230989863
Q ss_pred C-CCCEEEEEEEECC----------CCCCCEEEEEECCCCC-CCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCC
Q ss_conf 3-4435888542137----------6233157894038631-24455544343006420455780012002463455888
Q 003639 406 R-KLERLSWALFAID----------DHETMRTLKLKLNSVS-ICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQL 473 (806)
Q Consensus 406 ~-~L~~L~~~~~~~~----------~~~~l~~l~l~~~~~~-~~~~~i~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L 473 (806)
. +|+.+.+...... ....++.+.+..+... ..+.++..+++|+.|+++++......+..+ ..+++|
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L 444 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKL 444 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTC
T ss_pred HCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH--HCCCCC
T ss_conf 227719986278747876766653324776189897784654248777568987989895884668546777--449988
Q ss_pred CEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC
Q ss_conf 67772168983087538888888998885208750232222211224346578898658999269998832561333026
Q 003639 474 KHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCL 553 (806)
Q Consensus 474 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 553 (806)
++|++.++.....+ ......+++|+.|++.++.....++.. ...+++|+.|++.+| ++++..+ ..+..+
T Consensus 445 ~~L~L~~n~l~~~~------p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~L~~N-~l~~~~p-~~~~~l 513 (768)
T 3rgz_A 445 RDLKLWLNMLEGEI------PQELMYVKTLETLILDFNDLTGEIPSG---LSNCTNLNWISLSNN-RLTGEIP-KWIGRL 513 (768)
T ss_dssp CEEECCSSCCCSCC------CGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSS-CCCSCCC-GGGGGC
T ss_pred CEEECCCCCCCCCC------CHHHCCCCCCEEEEECCCCCCCCCCHH---HHCCCCCCEEECCCC-CCCCCCC-HHHHCC
T ss_conf 98989788154718------978828777329990199513758878---816998998975399-5189687-688568
Q ss_pred CCCCEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 866389860144631000235765413555101465365864988884312469
Q 003639 554 PRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCG 607 (806)
Q Consensus 554 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~ 607 (806)
++|++|++++|.....++ ..+..+++|+.|++++|+-...+|..
T Consensus 514 ~~L~~L~L~~N~l~~~~p----------~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIP----------AELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp TTCCEEECCSSCCEEECC----------GGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CCCCEEECCCCCCCCCCC----------HHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf 999989897894337488----------77708898998989888468827957
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=281.09 Aligned_cols=511 Identities=14% Similarity=0.149 Sum_probs=343.9
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEEC
Q ss_conf 179997078998789989999733999368998444459870231699724999536988658-7000045687589805
Q 003639 209 CYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLV 287 (806)
Q Consensus 209 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~ 287 (806)
.+.+..++..+..+|.... +++++|++.++... .+ +...|.++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~-~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLK-IL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCC-EE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCEECCCCCCCCCCCCCC-CCCCEEECCCCCCC-EE--CHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECC
T ss_conf 9705746888451898888-87678878889757-73--75455577667488688773664397773060106886787
Q ss_pred CCCCCC--CHHHCCCCCCCEEECCCCCCCCCC-HHCCCCCCCCEEECCCCCCCC--CCCHHHHHCCCCCCEEEEECCCCC
Q ss_conf 767899--100027776546861378886347-110599967899256876554--239044404878979980068545
Q 003639 288 ECMLDD--IAIIGKLKNLEILSFWGSGIVKLP-EELGHLTKLRQLDLSNCFKLK--VIAPNVISRLVRLEELYMSNCFVE 362 (806)
Q Consensus 288 ~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~~p~~~l~~L~~L~~L~l~~~~~~ 362 (806)
+|.+.. |..++++++|++|++++|.+..++ ..++++++|++|++++|. +. .+|.. ++++++|++|+++++.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCE
T ss_conf 985630485220786537888703775554451134898877989687885-232530686-732677778876688531
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCC-CCEEEEEECCCCCCCCCCC-CCCCCEEEEEEEECC---------CCCCCEEEEEEC
Q ss_conf 46799982110003201389999-8589999628986784102-234435888542137---------623315789403
Q 003639 363 WDDEGPNSERINARLDELMHLPR-LATLEVHVKNDNVLPEGFF-ARKLERLSWALFAID---------DHETMRTLKLKL 431 (806)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-~~~L~~L~~~~~~~~---------~~~~l~~l~l~~ 431 (806)
...+ ..+..+.+++. +..|+++.+....++...+ ..+|+.+.+...... ....++.+.+..
T Consensus 167 ~~~~--------~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 167 TITV--------NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp EECT--------TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred ECCH--------HHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 0573--------34121203420024300468975325711056760433524678561667788860266565231411
Q ss_pred CCCCC----------CCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 86312----------44555443430064204557800120024634558886777216898308753888888899888
Q 003639 432 NSVSI----------CSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFP 501 (806)
Q Consensus 432 ~~~~~----------~~~~i~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~ 501 (806)
..... ....+..+ .++.+.+..........+.+ ..+++|+.|++.++.. ..++ ....++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~-~~l~-------~l~~~~ 307 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVSI-KYLE-------DVPKHF 307 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCCC-CCCC-------CCCTTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHC-CHHHEECCCCCCCCCCCCCC--CCCCCCCEEEECCCCC-HHHH-------HCCCCC
T ss_conf 11036774102681776666543-47450123665555432223--5488789877147660-4435-------433401
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCHHCCCCCCCCCC
Q ss_conf 52087502322222112243465788986589992699988325613330268663898601446310002357654135
Q 003639 502 ILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAID 581 (806)
Q Consensus 502 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 581 (806)
+|+.|++.++.. ..++ . . .+++|+.|.+.++..+... .+..+++|++|++++|. ++.... .+
T Consensus 308 ~L~~L~l~~n~l-~~lp-~---~-~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~~~~-------~~ 369 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFP-T---L-DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNA-LSFSGC-------CS 369 (606)
T ss_dssp CCSEEEEESCCC-SSCC-C---C-CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSC-EEEEEE-------CC
T ss_pred CCCEEECCCCCC-CCCC-C---C-CCCCCCEEECCCCCCCCCH----HHCCCCCCCEEECCCCC-CCCCCC-------HH
T ss_conf 177897646667-6546-6---7-8875564454478685310----00248988879775873-687752-------01
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 55101465365864988884312469842112358655445433343211234421222211358755456000000223
Q 003639 582 HQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKI 661 (806)
Q Consensus 582 ~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~l~~~ 661 (806)
..+..+++|+.|++++|. +..++..... ...+.... ....... ..........+++|+.|++++|.+...
T Consensus 370 ~~~~~~~~L~~L~L~~n~-l~~~~~~~~~---l~~L~~L~---l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNG-AIIMSANFMG---LEELQHLD---FQHSTLK---RVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp HHHHCCSCCCEEECCSCS-EEEECCCCTT---CTTCCEEE---CTTSEEE---STTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred HHHCCCCCCCEEECCCCC-CCCCHHHCCC---CCCCCEEE---CCCCCCC---CCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 221467755486788995-3000554068---88889658---9887058---753764564621378898968978743
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCE-ECCHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998411002487753998713898524-25410574302456488804544440203566557899941133446001
Q 003639 662 WPNQLPVAMFLCFQNLTRLILRKCPKLKY-IFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLI 740 (806)
Q Consensus 662 ~~~~~~~~~~~~l~~L~~L~l~~C~~L~~-l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~L~~L~ 740 (806)
.+.. |..+++|++|++++| +++. . ....+..+++|++|++++| .+..+. ++... .+++|+.|+
T Consensus 440 ~~~~-----~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~-------~l~~L~~L~ 503 (606)
T 3vq2_A 440 FDGI-----FLGLTSLNTLKMAGN-SFKDNT-LSNVFANTTNLTFLDLSKC-QLEQIS-WGVFD-------TLHRLQLLN 503 (606)
T ss_dssp CTTT-----TTTCTTCCEEECTTC-EEGGGE-ECSCCTTCTTCCEEECTTS-CCCEEC-TTTTT-------TCTTCCEEE
T ss_pred CHHH-----HCCCCCCCEEECCCC-CCCCCC-HHHHHCCCCCCCEEECCCC-CCCCCC-HHHHC-------CCCCCCEEE
T ss_conf 3555-----347787898989898-379854-6776045788998989888-577648-65615-------464689898
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHCC-CCCCCCCC
Q ss_conf 2556565533-79988688998578968329982461411010012-33236999
Q 003639 741 LLGLPELKCL-YPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFK-SSEEDKPD 793 (806)
Q Consensus 741 l~~c~~l~~l-~~~~~~~~l~sL~~L~i~~C~~l~~lp~~~~~~l~-~L~~~~~~ 793 (806)
+++| .++.+ |.. +..+++|+.|++++|+ ++.+|..+ ..++ .|+.+..+
T Consensus 504 Ls~N-~l~~~~~~~--~~~l~~L~~L~l~~N~-l~~~p~~~-~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 504 MSHN-NLLFLDSSH--YNQLYSLSTLDCSFNR-IETSKGIL-QHFPKSLAFFNLT 553 (606)
T ss_dssp CCSS-CCSCEEGGG--TTTCTTCCEEECTTSC-CCCEESCG-GGSCTTCCEEECC
T ss_pred CCCC-CCCCCCHHH--CCCCCCCCEEECCCCC-CCCCCHHH-HHHCCCCCEEECC
T ss_conf 9899-578748777--0688768988898983-76668767-5210217488762
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=279.32 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=63.4
Q ss_pred CCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02487753998713898524254105743024564888045444402035665578999411334460012556565533
Q 003639 671 FLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCL 750 (806)
Q Consensus 671 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 750 (806)
|..+++|+.|++++ ++++...| ..+..++.|+.|++++| .+...+ |+... .+++|+.|+++++.--..+
T Consensus 628 ~~~l~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~Ls~N-~l~g~i-p~~l~-------~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 628 FDNNGSMMFLDMSY-NMLSGYIP-KEIGSMPYLFILNLGHN-DISGSI-PDEVG-------DLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CSSSBCCCEEECCS-SCCBSCCC-GGGGGCTTCCEEECCSS-CCCSCC-CGGGG-------GCTTCCEEECCSSCCEECC
T ss_pred HHCCCCCCEEECCC-CCCCCCCC-HHHHCCCCCCEEECCCC-CCCCCC-CHHHH-------CCCCCCEEECCCCCCCCCC
T ss_conf 40335665797858-80155587-78841415787848688-038878-96784-------7778998989788023868
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEECCC-CHHHCCC
Q ss_conf 79988688998578968329982461411-0100123
Q 003639 751 YPGMHTSEWPALKLLDVSACDQVTVFDSE-LFSFFKS 786 (806)
Q Consensus 751 ~~~~~~~~l~sL~~L~i~~C~~l~~lp~~-~~~~l~~ 786 (806)
|.. +..+++|++|++++|+--..+|.+ .+..++.
T Consensus 697 p~~--l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 697 PQA--MSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp CGG--GGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred CHH--HHCCCCCCEEECCCCCCCCCCCCCHHHCCCCH
T ss_conf 867--75788789787968815560899601024897
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=276.95 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=126.8
Q ss_pred CCCCCCCEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCC-CCCCCCCCC
Q ss_conf 2223661799970789987899--8999973399936899844445987023169972499953698865-870000456
Q 003639 203 DIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLV 279 (806)
Q Consensus 203 ~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~ 279 (806)
..++..+++++++++.+..++. +..+++|++|++.+|...... | ..|.++++|++|++++|.+.. .|..++.++
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH--E-DTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC--T-TTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEEC--H-HHCCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 778986758981587347179667256766528978898355248--5-1136843367644889856545865523442
Q ss_pred CCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC--EE
Q ss_conf 87589805767899--100027776546861378886347-11059996789925687655423904440487897--99
Q 003639 280 NLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKLP-EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLE--EL 354 (806)
Q Consensus 280 ~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~--~L 354 (806)
+|++|++++|.+.. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.+++|+ .|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEE
T ss_pred CCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCHHHHHHHCCCCEEEE
T ss_conf 15376521267665781012237822389887983411476545687656877765684-45549656332215640389
Q ss_pred EEECCCCC
Q ss_conf 80068545
Q 003639 355 YMSNCFVE 362 (806)
Q Consensus 355 ~l~~~~~~ 362 (806)
+++++.+.
T Consensus 185 ~l~~n~l~ 192 (606)
T 3t6q_A 185 NLNGNDIA 192 (606)
T ss_dssp ECTTCCCC
T ss_pred ECCCCCCC
T ss_conf 66798147
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=276.89 Aligned_cols=538 Identities=17% Similarity=0.178 Sum_probs=274.1
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 66898962223661799970789987899--8999973399936899844445987023169972499953698865870
Q 003639 196 DVWEWPDDIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLLPS 273 (806)
Q Consensus 196 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~ 273 (806)
.....+ ..++.++++++++++.+..++. +..+++|++|++.++..... +...|.++++|++|++++|.+..+|.
T Consensus 15 ~L~~ip-~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~l~~ 90 (680)
T 1ziw_A 15 KLTQVP-DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL---EPELCQKLPMLKVLNLQHNELSQLSD 90 (680)
T ss_dssp CCSSCC-SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC---CTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCC-CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC---CHHHHHCCCCCCEEECCCCCCCCCCH
T ss_conf 805264-12488876888989977875978871787675887889964856---97787406676888899985675685
Q ss_pred -CCCCCCCCCEEEECCCCCCC--CHHHCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCHHHHH--C
Q ss_conf -00045687589805767899--10002777654686137888634-711059996789925687655423904440--4
Q 003639 274 -SIDLLVNLQTLCLVECMLDD--IAIIGKLKNLEILSFWGSGIVKL-PEELGHLTKLRQLDLSNCFKLKVIAPNVIS--R 347 (806)
Q Consensus 274 -~l~~l~~Lr~L~L~~~~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~--~ 347 (806)
.++.+.+|++|++++|.+.. +..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++ .
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFA 169 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGT
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHHHCCC
T ss_conf 453038888989898996685396674156788889898995246672111245567779745884-3652978862446
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCC---------------------------CCCCEEEEEECCCCCCC
Q ss_conf 878979980068545467999821100032013899---------------------------99858999962898678
Q 003639 348 LVRLEELYMSNCFVEWDDEGPNSERINARLDELMHL---------------------------PRLATLEVHVKNDNVLP 400 (806)
Q Consensus 348 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~ 400 (806)
+++|++|+++++.+....+ ..+..+ ++|+.|+++++.....+
T Consensus 170 ~~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEFSP-----------GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp TCEESEEECTTCCCCCBCT-----------TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred CCCCCEEECCCCCCCCCCH-----------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 6632179888982565581-----------55532234455430566468056777877753151008874577436468
Q ss_pred CCCC--C--CCCCEEEEEEEEC--------CCCCCCEEEEEECCCCCC-CCCCCCCCCCEEEEECCCCCCCCH-----HC
Q ss_conf 4102--2--3443588854213--------762331578940386312-445554434300642045578001-----20
Q 003639 401 EGFF--A--RKLERLSWALFAI--------DDHETMRTLKLKLNSVSI-CSKKLQGIKDVEYLCLEKLQDVKN-----VL 462 (806)
Q Consensus 401 ~~~~--~--~~L~~L~~~~~~~--------~~~~~l~~l~l~~~~~~~-~~~~i~~l~~L~~L~L~~~~~~~~-----~~ 462 (806)
.... + .+|+.+.+..... .....++.+.+..+.... .+..+..+++|+.|+++++..... ++
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCC
T ss_conf 66751467677888778788767568021167410568557788567658656267888557736331321333335545
Q ss_pred C--CCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 0--2463455888677721689830875388888889988852087502322-222112243465788986589992699
Q 003639 463 F--DLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLI-KLERICQDRLSVQSFNELKTIRVEHCD 539 (806)
Q Consensus 463 ~--~l~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~L~~L~l~~c~ 539 (806)
. ......+++|++|++.++. +..+. ......+++|++|++.++. .+..+....+.....++|+.|++.+ +
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~-n 391 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDND-IPGIK-----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-N 391 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCC-BCCCC-----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT-S
T ss_pred CCCHHHCCCCCCCCEEECCCCC-CCCCC-----HHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCC-C
T ss_conf 4386562467778888798982-68788-----557406568728988798014432353220245568676688999-9
Q ss_pred CCCCCCCHHHHCCCCCCCEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98832561333026866389860144631000235765413555101465365864988884312469842112358655
Q 003639 540 QLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHE 619 (806)
Q Consensus 540 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~ 619 (806)
+++.+++ ..+..+++|++|++.++.....++. ..+..+++|+.|++++|. +..++...... .+.+..
T Consensus 392 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--~~~L~~ 458 (680)
T 1ziw_A 392 KISKIES-DAFSWLGHLEVLDLGLNEIGQELTG---------QEWRGLENIFEIYLSYNK-YLQLTRNSFAL--VPSLQR 458 (680)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSSCCEEECCS---------GGGTTCTTCCEEECCSCS-EEECCTTTTTT--CTTCCE
T ss_pred CCCEECH-HHHHCCCCCCEEECCCCCCCCCCCC---------CCCCCCCCCCEEECCCCC-CCEECHHHHHC--CCCCCC
T ss_conf 7776775-4420778888886778757543575---------532575461278448997-54227645500--754310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEECC------
Q ss_conf 44543334321123442122221135875545600000022389998411002487753998713898524254------
Q 003639 620 TCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFS------ 693 (806)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~------ 693 (806)
.. ......... .........+++|+.|++++|.++.+++.. |.++++|+.|++++ ++++.++.
T Consensus 459 L~---l~~n~l~~~--~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 459 LM---LRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDM-----LEGLEKLEILDLQH-NNLARLWKHANPGG 527 (680)
T ss_dssp EE---CTTSCCBCT--TCSSCTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCS-SCCGGGGSTTSTTS
T ss_pred CH---HCCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCHHH-----HCCCCCCCEEECCC-CCCCCCCHHHCCCC
T ss_conf 11---014644225--667764555787899989999877679446-----34553468885889-97300000004677
Q ss_pred -HHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf -1057430245648880454444020356655789994113344600125565655337998868899857896832998
Q 003639 694 -ASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQ 772 (806)
Q Consensus 694 -~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~sL~~L~i~~C~~ 772 (806)
...+..+++|+.|++++| .++.+.. +.. ..+++|+.|++++ ..++.++.+. +..+++|+.|++++| +
T Consensus 528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~-------~~l~~L~~L~Ls~-N~l~~l~~~~-~~~l~~L~~L~L~~N-~ 595 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESN-GFDEIPV-EVF-------KDLFELKIIDLGL-NNLNTLPASV-FNNQVSLKSLNLQKN-L 595 (680)
T ss_dssp CCCTTTTCTTCCEEECCSS-CCCCCCT-TTT-------TTCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECTTS-C
T ss_pred CCHHHCCCCCCCEEECCCC-CCCCCCH-HHC-------CCCCCCCEEECCC-CCCCCCCHHH-HCCCCCCCEEECCCC-C
T ss_conf 4142337998888889999-7887797-773-------4666752238999-9777679768-378988888989999-6
Q ss_pred CEEECCCCHH-HCCCCCCCCC
Q ss_conf 2461411010-0123323699
Q 003639 773 VTVFDSELFS-FFKSSEEDKP 792 (806)
Q Consensus 773 l~~lp~~~~~-~l~~L~~~~~ 792 (806)
++.++...+. .+++|+.+..
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCCCHHHHCCCCCCCCEEEC
T ss_conf 870596683011466577983
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=272.35 Aligned_cols=538 Identities=18% Similarity=0.173 Sum_probs=290.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEECC
Q ss_conf 79997078998789989999733999368998444459870231699724999536988658-70000456875898057
Q 003639 210 YAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLLL-PSSIDLLVNLQTLCLVE 288 (806)
Q Consensus 210 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~l~~l~~Lr~L~L~~ 288 (806)
+.++.+++.+..+|.... +++++|++.++.. ..+ +...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l-~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL-RRL--PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC-CCC--CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCCCCC-CCCCEEECCCCCC-CCC--CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 744877798052641248-8876888989977-875--978871787675887889964856977874066768888999
Q ss_pred CCCCC-C-HHHCCCCCCCEEECCCCCCCCCC-HHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 67899-1-00027776546861378886347-110599967899256876554239044404878979980068545467
Q 003639 289 CMLDD-I-AIIGKLKNLEILSFWGSGIVKLP-EELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWDD 365 (806)
Q Consensus 289 ~~l~~-~-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 365 (806)
|.+.. | ..++++++|++|++++|.+..+| ..++++++|++|++++|. +...+.+.++++++|++|+++++.+...
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~- 160 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQAL- 160 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCB-
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCCCC-
T ss_conf 85675685453038888989898996685396674156788889898995-2466721112455677797458843652-
Q ss_pred CCCCCHHHHCCCCC--CCCCCCCCEEEEEECCCCCCCCCCC--CCCCCEEEEEEEECC-----------CCCCCEEEEEE
Q ss_conf 99982110003201--3899998589999628986784102--234435888542137-----------62331578940
Q 003639 366 EGPNSERINARLDE--LMHLPRLATLEVHVKNDNVLPEGFF--ARKLERLSWALFAID-----------DHETMRTLKLK 430 (806)
Q Consensus 366 ~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~~~~~~~~-----------~~~~l~~l~l~ 430 (806)
.... ...+++|+.|+++++....++.... +.+|+.+.+...... ....++.+.+.
T Consensus 161 ----------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 161 ----------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp ----------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred ----------CHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf ----------9788624466632179888982565581555322344554305664680567778777531510088745
Q ss_pred CCCCCC-CCCCCCCCC--CEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 386312-445554434--30064204557800120024634558886777216898308753888888899888520875
Q 003639 431 LNSVSI-CSKKLQGIK--DVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN 507 (806)
Q Consensus 431 ~~~~~~-~~~~i~~l~--~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~ 507 (806)
.+.... .+.++..++ +|+.|+++++......+..+ ..+++|++|++.++. +..+. ......+++|+.|+
T Consensus 231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~-----~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNN-IQHLF-----SHSLHGLFNVRYLN 302 (680)
T ss_dssp TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCC-BSEEC-----TTTTTTCTTCCEEE
T ss_pred CCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCEEECCCCC-CCCCC-----HHHHCCCCCCCEEE
T ss_conf 77436468667514676778887787887675680211--674105685577885-67658-----65626788855773
Q ss_pred CCCCCCCC-----CCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCC---------------
Q ss_conf 02322222-----1122-43465788986589992699988325613330268663898601446---------------
Q 003639 508 LYNLIKLE-----RICQ-DRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRN--------------- 566 (806)
Q Consensus 508 l~~~~~l~-----~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~--------------- 566 (806)
+.++..-. .++. .......+++|+.|++.+ +.++.+++ ..+..+++|++|++++|..
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED-NDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCS-CCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred CCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCC-CCCCCCCH-HHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCC
T ss_conf 633132133333554543865624677788887989-82687885-5740656872898879801443235322024556
Q ss_pred --CCCHHCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf --31000235765413-555101465365864988884312469842112358655445433343211234421--2222
Q 003639 567 --IQEIFAVDGEYDAI-DHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSA--LFNE 641 (806)
Q Consensus 567 --l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 641 (806)
++.+....+..... +..+..+++|+.|+++++.-...++...... ...+... ... ..... ....
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--l~~L~~L---~Ls------~n~l~~~~~~~ 449 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG--LENIFEI---YLS------YNKYLQLTRNS 449 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT--CTTCCEE---ECC------SCSEEECCTTT
T ss_pred CCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCCEE---ECC------CCCCCEECHHH
T ss_conf 867668899997776775442077888888677875754357553257--5461278---448------99754227645
Q ss_pred CCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCEEEEECCCCCCEEECCC
Q ss_conf 11358755456000000223899984110024877539987138985242541057430245648880454444020356
Q 003639 642 KVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRHCKGLQEIISKE 721 (806)
Q Consensus 642 ~~~l~~L~~L~i~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~ 721 (806)
...+++|+.|++.+|.+..+... ...|..+++|+.|++++ ++++.++ ...+..+++|+.|++++| .+..+....
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~---p~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 523 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSS---PSPFQPLRNLTILDLSN-NNIANIN-DDMLEGLEKLEILDLQHN-NLARLWKHA 523 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCS---SCTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSS-CCGGGGSTT
T ss_pred HHCCCCCCCCHHCCCCCCCCCCC---CCCCCCCCCCCEEECCC-CCCCCCC-HHHHCCCCCCCEEECCCC-CCCCCCHHH
T ss_conf 50075431011014644225667---76455578789998999-9877679-446345534688858899-730000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHCCCCCCCCCC
Q ss_conf 655789994113344600125565655337998868899857896832998246141101001233236999
Q 003639 722 GADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPD 793 (806)
Q Consensus 722 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~sL~~L~i~~C~~l~~lp~~~~~~l~~L~~~~~~ 793 (806)
...........+++|+.|+++++ .++.++.+. +..+++|+.|+++ ..+++.+|.+.+..+++|+.+..+
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV-FKDLFELKIIDLG-LNNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCCCCHHHCCCCCCCEEECCCC-CCCCCCHHH-CCCCCCCCEEECC-CCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 46774142337998888889999-788779777-3466675223899-997776797683789888889899
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=268.00 Aligned_cols=498 Identities=18% Similarity=0.202 Sum_probs=302.1
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCC
Q ss_conf 8941766689896222366179997078998789--98999973399936899844445987023169972499953698
Q 003639 190 VLVRNEDVWEWPDDIALKECYAISLRGCSIHELP--EGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQ 267 (806)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~ 267 (806)
+..........+. .+.++++|++++|.+..+. .+..+++|++|++.++.....+ +...|.++++|++|++++|.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECTTCC
T ss_pred EECCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCC--CHHHHCCCCCCCEEECCCCC
T ss_conf 9823799777898--9998688888778678329667766213708867899774441--97785378778888798995
Q ss_pred CCCC-CCCCCCCCCCCEEEECCCCCCC--CHH--HCCCCCCCEEECCCCCCCCC--CHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8658-7000045687589805767899--100--02777654686137888634--711059996789925687655423
Q 003639 268 LLLL-PSSIDLLVNLQTLCLVECMLDD--IAI--IGKLKNLEILSFWGSGIVKL--PEELGHLTKLRQLDLSNCFKLKVI 340 (806)
Q Consensus 268 i~~l-p~~l~~l~~Lr~L~L~~~~l~~--~~~--i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~ 340 (806)
+..+ |..++.+.+|++|++++|.+.. +.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCC-CCEE
T ss_conf 853197671578665870176788973404676455667999888987864232566557638898989898984-7766
Q ss_pred CHHHHHCC--CCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCC------CCCEEEEEECCCCC-CCCCCC----CCC
Q ss_conf 90444048--789799800685454679998211000320138999------98589999628986-784102----234
Q 003639 341 APNVISRL--VRLEELYMSNCFVEWDDEGPNSERINARLDELMHLP------RLATLEVHVKNDNV-LPEGFF----ARK 407 (806)
Q Consensus 341 p~~~l~~L--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~-~~~~~~----~~~ 407 (806)
....++.+ ++|+.|+++.+.+....+ ..++.+. .|+.|+++++.... .+..+. ...
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~-----------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVS-----------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCC-----------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CHHHCCCCCCCCCCEEECCCCCCCCCCC-----------CCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 7887535567750357897886665545-----------53322377223574007965788686567788876427441
Q ss_pred CCEEEEEEEE-------------------CCCCCCCEEEEEECCCCCCC-CCCCCCCCCEEEEECCCCCCCCHHCCCCCC
Q ss_conf 4358885421-------------------37623315789403863124-455544343006420455780012002463
Q 003639 408 LERLSWALFA-------------------IDDHETMRTLKLKLNSVSIC-SKKLQGIKDVEYLCLEKLQDVKNVLFDLDT 467 (806)
Q Consensus 408 L~~L~~~~~~-------------------~~~~~~l~~l~l~~~~~~~~-~~~i~~l~~L~~L~L~~~~~~~~~~~~l~~ 467 (806)
+..+.+.... ......++.+.+..+..... +..+..+++|+.|+++++......+..+
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-- 310 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-- 310 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT--
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHH--
T ss_conf 001121212234664445668898556525554786189897994551586345258999999897981898796883--
Q ss_pred CCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
Q ss_conf 45588867772168983087538888888998885208750232222211224346578898658999269998832561
Q 003639 468 EGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLL 547 (806)
Q Consensus 468 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 547 (806)
.++++|++|++.++. +..+. ......+++|+.|++.++ .+..+... ....+++|+.|++.+ +.++.++
T Consensus 311 ~~l~~L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~Ls~-N~l~~i~-- 378 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNL-LGELY-----SSNFYGLPKVAYIDLQKN-HIAIIQDQ--TFKFLEKLQTLDLRD-NALTTIH-- 378 (844)
T ss_dssp TTCSSCCEEEEESCC-CSCCC-----SCSCSSCTTCCEEECCSC-CCCCCCSS--CSCSCCCCCEEEEET-CCSCCCS--
T ss_pred CCCCCCCEEECCCCC-CCCCC-----HHHHCCCCCCCEEECCCC-CCCCCCHH--HHCCCCCCCEEECCC-CCCCCCC--
T ss_conf 688899989898997-88518-----788468999998989899-87762866--613788899988989-9778616--
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHCCC----------CCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 333026866389860144631000235----------76541355--510146536586498888431246984211235
Q 003639 548 SAAKCLPRLERIAVINCRNIQEIFAVD----------GEYDAIDH--QRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQ 615 (806)
Q Consensus 548 ~~~~~l~~L~~L~i~~c~~l~~~~~~~----------~~~~~~~~--~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~ 615 (806)
.+++|+.+.+.++. +..++... +.....+. .+..+++|+.|+++++. +..++.
T Consensus 379 ----~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------- 443 (844)
T 3j0a_A 379 ----FIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSG--------- 443 (844)
T ss_dssp ----SCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCS---------
T ss_pred ----CCCCCCHHCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCC-CCCCCC---------
T ss_conf ----88982320058997-231455455431221456753457556665127766666677871-255554---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCHH
Q ss_conf 86554454333432112344212222113587554560000002238999841100248775399871389852425410
Q 003639 616 GMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLKYIFSAS 695 (806)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~ 695 (806)
......+++|+.|++++|.++..|........|.++++|+.|++++ ++++.++ ..
T Consensus 444 -----------------------~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~-~~ 498 (844)
T 3j0a_A 444 -----------------------DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLP-PG 498 (844)
T ss_dssp -----------------------SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCC-TT
T ss_pred -----------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCC-CCCCCCC-HH
T ss_conf -----------------------3335668731002477773644101355355544755365777889-8565539-55
Q ss_pred HHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 574302456488804544440203566557899941133446001255656553379988688998578968329982
Q 003639 696 MLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQV 773 (806)
Q Consensus 696 ~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~sL~~L~i~~C~~l 773 (806)
.+..+++|+.|++++| .++.+. ... ..++|+.|+++++ .++.++.. .+++|+.+++.++|-.
T Consensus 499 ~~~~l~~L~~L~Ls~N-~l~~l~--~~~--------~~~~L~~L~Ls~N-~l~~~~~~----~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSN-RLTVLS--HND--------LPANLEILDISRN-QLLAPNPD----VFVSLSVLDITHNKFI 560 (844)
T ss_dssp SSSSCCSCSEEEEESC-CCSSCC--CCC--------CCSCCCEEEEEEE-CCCCCCSC----CCSSCCEEEEEEECCC
T ss_pred HCCCHHHHHEEECCCC-CCCCCC--HHH--------HHCCCCEEECCCC-CCCCCCHH----HHCCCCEEEECCCCCC
T ss_conf 7045012215699999-787457--101--------1004558889888-47888966----8377688993199702
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=265.27 Aligned_cols=520 Identities=17% Similarity=0.138 Sum_probs=289.8
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCC-CCCCCCCCCCCCEEEEC
Q ss_conf 17999707899878998999973399936899844445987023169972499953698865-87000045687589805
Q 003639 209 CYAISLRGCSIHELPEGLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLLL-LPSSIDLLVNLQTLCLV 287 (806)
Q Consensus 209 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~l~~l~~Lr~L~L~ 287 (806)
-+.+...+..+..+|... .+.+++|++.++.... + +...|.++++|++|++++|.+.. .|..++.+++|++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~-~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPT-I--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSE-E--CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCCC-C--CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECC
T ss_conf 723777779806286778-9867589815873471-7--96672567665289788983552485113684336764488
Q ss_pred CCCCCC--CHHHCCCCCCCEEECCCCCCCCC-CHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 767899--10002777654686137888634-711059996789925687655423904440487897998006854546
Q 003639 288 ECMLDD--IAIIGKLKNLEILSFWGSGIVKL-PEELGHLTKLRQLDLSNCFKLKVIAPNVISRLVRLEELYMSNCFVEWD 364 (806)
Q Consensus 288 ~~~l~~--~~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~l~~L~~L~~L~l~~~~~~~~ 364 (806)
+|.+.. |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|+++++.+.
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 166 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH-- 166 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC--
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC--
T ss_conf 985654586552344215376521267665781012237822389887983-41147654568765687776568445--
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCC--EEEEEECCCCCCCCCCC-CCCCCEEEEEEEECC-----CCCCCEEEEEECCC--C
Q ss_conf 79998211000320138999985--89999628986784102-234435888542137-----62331578940386--3
Q 003639 365 DEGPNSERINARLDELMHLPRLA--TLEVHVKNDNVLPEGFF-ARKLERLSWALFAID-----DHETMRTLKLKLNS--V 434 (806)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~-~~~L~~L~~~~~~~~-----~~~~l~~l~l~~~~--~ 434 (806)
......++.+++|+ .|+++++.....+...+ ...|+.+.+...... ....+....+.... .
T Consensus 167 ---------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 167 ---------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp ---------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred ---------CCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCC
T ss_conf ---------54965633221564038966798147548667300100135567726677776513356442200201102
Q ss_pred C---CC-CCCCCCC--CCEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf 1---24-4555443--4300642045578001200246345588867772168983087538888888998885208750
Q 003639 435 S---IC-SKKLQGI--KDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNL 508 (806)
Q Consensus 435 ~---~~-~~~i~~l--~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l 508 (806)
. .. ...+..+ .+++.|+++++.........+ ..+++|++|++.++. ++.++ .....+++|++|++
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~lp------~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATH-LSELP------SGLVGLSTLKKLVL 308 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT--TTCTTCSEEECTTSC-CSCCC------SSCCSCTTCCEEEC
T ss_pred CCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHH--CCCCCCCEEECCCCC-CCCCC------HHHCCCCCCCEEEC
T ss_conf 6412268667430320750599944576585577774--456678889562882-67778------21416546888977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCHHCCCCCCCCCCCCCCCCC
Q ss_conf 23222221122434657889865899926999883256133302686638986014463100023576541355510146
Q 003639 509 YNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFAVDGEYDAIDHQRIEFG 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~ 588 (806)
.++. +..+.. .....+++|+.|.+.++.....++. ..+..+++|++|++++|.. ..... .+..+..++
T Consensus 309 ~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~-------~~~~~~~l~ 376 (606)
T 3t6q_A 309 SANK-FENLCQ--ISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDI-ETSDC-------CNLQLRNLS 376 (606)
T ss_dssp TTCC-CSBGGG--GCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCC-CEEEE-------STTTTTTCT
T ss_pred CCCC-CCCCCH--HHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCC-CCCCC-------CCHHCCCCC
T ss_conf 1687-686760--2330157689888989974443462-4550667589887889966-64567-------522105678
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCC
Q ss_conf 53658649888843124698421123586554454333432112344212222113587554560000002238999841
Q 003639 589 QLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSALFNEKVALSNLEVLEMNKVNIEKIWPNQLPV 668 (806)
Q Consensus 589 ~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~l~~~~~~~~~~ 668 (806)
+|+.|+++++.-. .+....... .+.+.... ........ .........+++|+.|++++|.+....+..
T Consensus 377 ~L~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~---l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--- 444 (606)
T 3t6q_A 377 HLQSLNLSYNEPL-SLKTEAFKE--CPQLELLD---LAFTRLKV---KDAQSPFQNLHLLKVLNLSHSLLDISSEQL--- 444 (606)
T ss_dssp TCCEEECCSCSCE-EECTTTTTT--CTTCSEEE---CTTCCEEC---CTTCCTTTTCTTCCEEECTTCCCBTTCTTT---
T ss_pred CCCEEECCCCCCC-CCCHHHHCC--CCCCCEEE---CCCCCCCC---CCCCHHHHCCCCCCEEECCCCCCCCCCHHH---
T ss_conf 8898989899677-578887347--74577687---88886777---565212417655888989898557768778---
Q ss_pred CCCCCCCCCCEEEEECCCCCCE--ECCHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1002487753998713898524--25410574302456488804544440203566557899941133446001255656
Q 003639 669 AMFLCFQNLTRLILRKCPKLKY--IFSASMLGSFEHLQHLEIRHCKGLQEIISKEGADDHVPPNFVFLQVTTLILLGLPE 746 (806)
Q Consensus 669 ~~~~~l~~L~~L~l~~C~~L~~--l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 746 (806)
|..+++|++|++++| .++. ++....+..+++|+.|++++| .+..+.. .... .+++|+.|+++++ .
T Consensus 445 --~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~-------~l~~L~~L~Ls~N-~ 511 (606)
T 3t6q_A 445 --FDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFT-------SLKMMNHVDLSHN-R 511 (606)
T ss_dssp --TTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTT-------TCTTCCEEECCSS-C
T ss_pred --HHCCCCCCEEECCCC-CCCCCCCCCCHHHCCCCCCCEEECCCC-CCCCCCH-HHHC-------CCCCCCEEECCCC-C
T ss_conf --737887888989899-888543454312404887668879999-6670686-4632-------6567888989898-0
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCHHHCCCCCCCCCC
Q ss_conf 55337998868899857896832998246141101001233236999
Q 003639 747 LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFFKSSEEDKPD 793 (806)
Q Consensus 747 l~~l~~~~~~~~l~sL~~L~i~~C~~l~~lp~~~~~~l~~L~~~~~~ 793 (806)
++.+... .+..+++| .|++++|. ++.+|...+..+++|+.+..+
T Consensus 512 l~~~~~~-~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 512 LTSSSIE-ALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCGGGGG-GGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECT
T ss_pred CCCCCHH-HHCCCCCC-EEECCCCC-CCCCCHHHCCCCCCCCEEECC
T ss_conf 6868966-84756651-89876894-142687662567787889677
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=260.28 Aligned_cols=488 Identities=17% Similarity=0.145 Sum_probs=318.6
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCC
Q ss_conf 417666898962223661799970789987899--899997339993689984444598702316997249995369886
Q 003639 192 VRNEDVWEWPDDIALKECYAISLRGCSIHELPE--GLECPRLEFLHINPKDSLFDINNPCNFFTGMRKLRVVDFTRMQLL 269 (806)
Q Consensus 192 ~~~~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~ 269 (806)
..+......+ ..++.++++++++++.+..++. +..+++|++|++.+|. ...+ +...|.++++|++|++++|.+.
T Consensus 14 c~~~~l~~ip-~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i--~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 14 CMELNFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTI--EDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp CCSSCCSSCC-SSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEE--CTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCCCCC-CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCEEEECCCCC-CCCC--CCCCCCCCHHCCEEECCCCCCC
T ss_conf 0788756167-7766556489765885473286574278886299898995-7714--8210148021888767699577
Q ss_pred CCC-CCCCCCCCCCEEEECCCCCCC-C-HHHCCCCCCCEEECCCCCCCC--CCHHCCCCCCCCEEECCCCCCCCCCCHHH
Q ss_conf 587-000045687589805767899-1-000277765468613788863--47110599967899256876554239044
Q 003639 270 LLP-SSIDLLVNLQTLCLVECMLDD-I-AIIGKLKNLEILSFWGSGIVK--LPEELGHLTKLRQLDLSNCFKLKVIAPNV 344 (806)
Q Consensus 270 ~lp-~~l~~l~~Lr~L~L~~~~l~~-~-~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~ 344 (806)
.++ ..++.+.+|++|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGG
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCHHHHCCCCCCCEEECCCCC-CCEECHHH
T ss_conf 44975615750133231654662347876654455555775678742200370444246887878676870-13246788
Q ss_pred HHCCCCC----CEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCCC--CCCCCC-CCCCCEEEEEEEE
Q ss_conf 4048789----79980068545467999821100032013899998589999628986--784102-2344358885421
Q 003639 345 ISRLVRL----EELYMSNCFVEWDDEGPNSERINARLDELMHLPRLATLEVHVKNDNV--LPEGFF-ARKLERLSWALFA 417 (806)
Q Consensus 345 l~~L~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~-~~~L~~L~~~~~~ 417 (806)
++.+++| +.++++++.+... ....+... +|+.|++.++.... ++..+. +..++.....+..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~-----------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFI-----------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEE-----------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred CCCHHCCCHHHHHCCCCCCCCEEC-----------CHHHHCCC-CCEEEECCCCCCCCCCHHHHHCCCCCCCEEEECCCC
T ss_conf 056310441433123578975320-----------97780027-611686335655432055665276413032551101
Q ss_pred CCC--------------CC--CCEEEEEECCCC--CCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCEEEEC
Q ss_conf 376--------------23--315789403863--124455544343006420455780012002463455888677721
Q 003639 418 IDD--------------HE--TMRTLKLKLNSV--SICSKKLQGIKDVEYLCLEKLQDVKNVLFDLDTEGFSQLKHLHVQ 479 (806)
Q Consensus 418 ~~~--------------~~--~l~~l~l~~~~~--~~~~~~i~~l~~L~~L~L~~~~~~~~~~~~l~~~~~~~L~~L~l~ 479 (806)
... .. .+..+.+..... ...+..+..+++++.|+++++.. ..++..+ ..+ +|++|++.
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~--~~~-~L~~L~l~ 312 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFS--YNF-GWQHLELV 312 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCC--SCC-CCSEEEEE
T ss_pred CCCCHHHHHCCHHHHCCCCCCCHHHHHHHCCHHHHHHCHHHHCCCCCCCEEEECCCCC-HHHHHHH--CCC-CCCEEEEC
T ss_conf 3671223214555653545454333113113035442434433767654787037641-0012232--027-73478601
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-HHHHCCCCCCCE
Q ss_conf 6898308753888888899888520875023222221122434657889865899926999883256-133302686638
Q 003639 480 NNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVEHCDQLSNIFL-LSAAKCLPRLER 558 (806)
Q Consensus 480 ~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~ 558 (806)
++.. ..+ +...+++|+.|.+.++...... ....+++|+.|++.+ +.++.... ...+..+++|++
T Consensus 313 ~n~~-~~l--------~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~ 377 (570)
T 2z63_A 313 NCKF-GQF--------PTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKY 377 (570)
T ss_dssp SCBC-SSC--------CBCBCSSCCEEEEESCBSCCBC-----CCCBCTTCCEEECCS-SCCBEEEEEEHHHHTCSCCCE
T ss_pred CCCC-CCC--------CCCCCCCCCEEECCCCCCCCCC-----CCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCCCE
T ss_conf 6740-334--------7332665478767677566644-----546688778796769-956754654433355676677
Q ss_pred EEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98601446310002357654135551014653658649888843124698421123586554454333432112344212
Q 003639 559 IAVINCRNIQEIFAVDGEYDAIDHQRIEFGQLRTLCLGSLPELTSFCCGVKKNRQAQGMHETCSNEISSLEDKLDISSAL 638 (806)
Q Consensus 559 L~i~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (806)
|++++|. +..++ ..+..+++|+.|+++++.-....+.
T Consensus 378 L~l~~n~-l~~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~-------------------------------- 414 (570)
T 2z63_A 378 LDLSFNG-VITMS----------SNFLGLEQLEHLDFQHSNLKQMSEF-------------------------------- 414 (570)
T ss_dssp EECCSCS-EEEEE----------EEEETCTTCCEEECTTSEEESCTTS--------------------------------
T ss_pred EECCCCC-CCCCC----------CCCCCCCCCCEEECCCCCCCCCCCH--------------------------------
T ss_conf 9898996-52132----------0002568887897458864556435--------------------------------
Q ss_pred CCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC--EECCHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf 222113587554560000002238999841100248775399871389852--425410574302456488804544440
Q 003639 639 FNEKVALSNLEVLEMNKVNIEKIWPNQLPVAMFLCFQNLTRLILRKCPKLK--YIFSASMLGSFEHLQHLEIRHCKGLQE 716 (806)
Q Consensus 639 ~~~~~~l~~L~~L~i~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~C~~L~--~l~~~~~~~~l~~L~~L~i~~C~~l~~ 716 (806)
.....+++|+.|++++|.+....+.. |..+++|++|++++| .++ .+| ..+..+++|+.|++++| .+..
T Consensus 415 -~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~p--~~~~~l~~L~~L~l~~n-~l~~ 484 (570)
T 2z63_A 415 -SVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVLKMAGN-SFQENFLP--DIFTELRNLTFLDLSQC-QLEQ 484 (570)
T ss_dssp -CTTTTCTTCCEEECTTSCCEECCTTT-----TTTCTTCCEEECTTC-EEGGGEEC--SCCTTCTTCCEEECTTS-CCCE
T ss_pred -HHHHCCCCCCEEECCCCCCCCCCHHH-----HHCCCCCCEEECCCC-CCCCCCCH--HHHHCCCCCCEEECCCC-CCCC
T ss_conf -66604788888968698366642556-----636874748988698-67655434--66634567888979999-5264
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 20356655789994113344600125565655337998868899857896832998246141
Q 003639 717 IISKEGADDHVPPNFVFLQVTTLILLGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS 778 (806)
Q Consensus 717 i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~sL~~L~i~~C~~l~~lp~ 778 (806)
+. +.... .+++|+.|++++| .++.++.+. +..+++|+.|++.+++--...|.
T Consensus 485 ~~-~~~~~-------~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 485 LS-PTAFN-------SLSSLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EC-TTTTT-------TCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCCCTTT
T ss_pred CC-HHHHH-------CCCCCCEEECCCC-CCCCCCHHH-HHCCCCCCEEEECCCCCCCCCCC
T ss_conf 77-55662-------6668898869897-179879899-62645776898149830578766
Done!