BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003641
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%)
Query: 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKA 121
G D+Y ILGV+ A DE +KK YR+LAL HPDKN + GA AFK + A+ +LS+
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 122 KRAEYDQRRNG 132
KR +YDQ +G
Sbjct: 64 KRKQYDQFGSG 74
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 126 YDQ 128
YDQ
Sbjct: 66 YDQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILGV P D +T+K YR+LA HPD +K A+ FK ++EAW +L D+ +RAE
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 126 YD---QRRNGKAF 135
YD Q RN F
Sbjct: 89 YDQLWQHRNDPGF 101
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 59 NKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGA--FKFVSEAWIL 116
N + E +Y +LGV P A D +KK YRK+AL HPDKN DGA FK +S+A+ +
Sbjct: 2 NAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEV 57
Query: 117 LSDKAKRAEYDQ 128
LSD+ KR YDQ
Sbjct: 58 LSDEKKRQIYDQ 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKN--KSIGADGAFKFVSEAWILLSDK 120
G A++Y +LGV A E +KK YRKLAL HPDKN A+ FK VSEA+ +LSD
Sbjct: 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDS 66
Query: 121 AKRAEYDQ 128
KR+ YD+
Sbjct: 67 KKRSLYDR 74
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKR 123
E +Y +LGV P A E +KK YRKLAL HPDKN + G FK +S+A+ +LSD KR
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE--KFKQISQAYEVLSDAKKR 62
Query: 124 AEYDQ 128
YD+
Sbjct: 63 ELYDK 67
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 67 WYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEY 126
+Y ILGV A + +KK + KLA+ HPDKNKS A+ F+ ++EA+ LSD +R EY
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 127 D 127
D
Sbjct: 69 D 69
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKN--KSIGADGAFKFVSEAWILLSDK 120
G D+Y +L V QA E +KK YRKLAL HPDKN A+ FK V+EA+ +LSD
Sbjct: 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66
Query: 121 AKRAEYDQRRNG 132
KR YD+ +G
Sbjct: 67 KKRDIYDRYGSG 78
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 40 GLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK 99
G GI Q ++ LD D Y +LGV+ A +KK Y+KLA HPDKNK
Sbjct: 4 GSSGILQSLSALDF------------DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK 51
Query: 100 SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132
GA+ F +S+A+ +LS++ KR YD +G
Sbjct: 52 DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y LG+ A DE +K+ YR+ AL HPDKNK GA+ FK ++EA+ +LSD KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 126 YDQ 128
+D+
Sbjct: 64 FDR 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 59 NKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLS 118
N + E Y +LGV+P A+++ +KK YRK AL HPD K G FK +SEA+ +L+
Sbjct: 2 NAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILN 59
Query: 119 DKAKRAEYDQ 128
D KR YDQ
Sbjct: 60 DPQKREIYDQ 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG-ADGAFKFVSEAWILLSDKA 121
+ D+Y ILGV+ A++ ++K Y++LA+ HPD+N+ A+ FK + EA+ +L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRAEYDQ 128
KRA YDQ
Sbjct: 61 KRAAYDQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG-ADGAFKFVSEAWILLSDKA 121
+ D+Y ILGV+ A++ ++K Y++LA+ HPD+N+ A+ FK + EA+ +L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRAEYDQ 128
KRA YDQ
Sbjct: 61 KRAAYDQ 67
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG-ADGAFKFVSEAWILLSDKA 121
+ D+Y ILGV+ A++ ++K Y++LA+ HPD+N+ A+ FK + EA+ +L+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRAEYDQ 128
KRA YDQ
Sbjct: 61 KRAAYDQ 67
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGA-------FKFVSEAWIL 116
+ DWY ILG P A+ +K++Y+KL LM HPDK + G F + +AW +
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 117 LSDKAKRAEYDQRR 130
L ++ + EYD +R
Sbjct: 69 LGNEETKREYDLQR 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDK 120
G D+Y ILGV A + +KK Y +LA HPD NK A F ++EA+ +LSD+
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 121 AKRAEYDQRRNG 132
KR +YD +G
Sbjct: 64 VKRKQYDAYGSG 75
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGA-------FKFVSEAWIL 116
+ DWY ILG P A+ +K++Y+KL L+ HPDK + G F + +AW +
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 117 LSDKAKRAEYDQRRNGKA 134
L ++ + +YD +R+G +
Sbjct: 75 LGNEETKKKYDLQRSGPS 92
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG--ADGAFKFVSEAWILLSDKAK 122
A +Y IL V A + +KK YR+ AL HPDKN A+ FK V+EA+ +LSDK K
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 123 RAEYDQ 128
R YD+
Sbjct: 62 REIYDR 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 67 WYGILGVTPQADDETVKKQYRKLALMLHPDKN-KSIGADGAFKFVSEAWILLSDKAKRAE 125
Y +LG+ A + +KK YRKLAL HPDKN + A FK ++ A +L+D KR
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNI 78
Query: 126 YDQ 128
YD+
Sbjct: 79 YDK 81
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 57 AENKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEA 113
A +I D + +LGV P A + V K YRKLA++LHPDK + G++ AFK V A
Sbjct: 19 AIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNA 75
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKN-KSIGADGAFKFVSEAWILLSDKAKRA 124
++Y +LGV+ A +++ ++KLAL LHPDKN + A G F ++ A+ +L D+ R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 125 EYDQ 128
+YD+
Sbjct: 63 KYDK 66
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKN-KSIGADGAFKFVSEAWILLSDKAK 122
+ ++Y +LGV+ A +++ ++KLAL LHPDKN + A G F ++ A+ +L D+
Sbjct: 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 123 RAEYDQ 128
R +YD+
Sbjct: 80 RKKYDK 85
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 22 RDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDET 81
+D+ A++ Q + GLE +++ K + D+Y ILGV A +
Sbjct: 350 QDYETAQEHNENDQQIREGLEKAQRLL-----------KQSQKRDYYKILGVKRNAKKQE 398
Query: 82 VKKQYRKLALMLHPD--KNKSIGADGAFKF--VSEAWILLSDKAKRAEYD 127
+ K YRKLAL HPD +N+ KF ++ A +LSD R ++D
Sbjct: 399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPD--KNKSIGADGAFKF--VSEAWILLSDKA 121
D+Y ILGV A + + K YRKLAL HPD +N+ KF ++ A +LSD
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 122 KRAEYD 127
R ++D
Sbjct: 443 MRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 68 YGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKF--VSEAWILLSDKAKRAE 125
Y +LGV A +K Y + + HPD+N S A+ A +F +S+A+++L R +
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRN-SGSAEAAERFTRISQAYVVLGSATLRRK 78
Query: 126 YDQ 128
YD+
Sbjct: 79 YDR 81
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKN-KSIGADGAFKFVSEAWILLSDKAKRA 124
D+Y +LG + E + +++ AL HPDK+ ++ A F+ + +A +L+++ RA
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 125 EYDQRRNGK 133
YD R +
Sbjct: 81 RYDHWRRSQ 89
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 2 ECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKI 61
E K+E AKE+ +K ++ K+ ++A +++T+ + A
Sbjct: 74 EMRKEEM--AKEMDPEKLKILEWIEGKERNIRA------------LLSTMHTVLWA---- 115
Query: 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDK 97
GE W + G+ E VKK YRK L++HPDK
Sbjct: 116 -GETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPDK 149
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 63 GEADWYGILGVTPQA-DDETVKKQYRKLALMLHPD----KNKSIGADGAFKFVSEAWILL 117
G + Y +L V + D + + K YR LA HPD K + + A+ F+ ++ A+ L
Sbjct: 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72
Query: 118 SDKAKRAEYD 127
D + YD
Sbjct: 73 KDDEAKTNYD 82
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 82 VKKQYRKLALMLHPDK--------NKSIGADGAFKFVSEAW 114
V+K Y++ L+LHPDK N+ A+ F+ + EAW
Sbjct: 57 VRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDK 97
GE W + G+ E VKK YRK L++HPDK
Sbjct: 47 AGETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPDK 81
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDK 97
GE W + G E VKK YRK L++HPDK
Sbjct: 34 AGETKWKPV-GXADLVTPEQVKKVYRKAVLVVHPDK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,357,065
Number of Sequences: 62578
Number of extensions: 945315
Number of successful extensions: 1714
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 38
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)