BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003641
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DR2|DJB12_BOVIN DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2
SV=1
Length = 370
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 78/176 (44%), Gaps = 52/176 (29%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVY------ 54
ME NKDEA R I+ K + A +F KAQ LYP P++ A ++
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYP----TPRVHALIESLNQKPQP 56
Query: 55 -----------------------ISAENKIGGEA-------------------DWYGILG 72
SA + GGE+ D+Y ILG
Sbjct: 57 AGDQPQPTEATHTTHRKAAGANTASANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILG 116
Query: 73 VTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQ 128
V+ A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YDQ
Sbjct: 117 VSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
>sp|Q0IIE8|DJB14_BOVIN DnaJ homolog subfamily B member 14 OS=Bos taurus GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 99/237 (41%), Gaps = 62/237 (26%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENK 60
ME N+DEA + EI+ + A + A++F KA+ LYP +P A L++ + +
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYP----LPSARALLEIIMKNGST 56
Query: 61 IG---------GEAD-------------------------------------WYGILGVT 74
G G D +Y +LGVT
Sbjct: 57 AGNSPHCRKPSGGGDQSKPNCTKDSSSGSGESGKGYTKDQVDGVLSINKCKNYYEVLGVT 116
Query: 75 PQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD------- 127
A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYDLTGNEEQ 176
Query: 128 ---QRRNGKAFQKVSTASGGTSTATAANGFYNFTKPSAKA-SKSTPRSGHSSTPSHK 180
Q+ NG+ F + N F+ PS S S R+G+S+ H+
Sbjct: 177 ACNQQNNGR-FNFHRGCEADITPEDLFNIFFGGGFPSGSVHSFSNGRAGYSNQHQHR 232
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1
SV=4
Length = 375
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 78/176 (44%), Gaps = 52/176 (29%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVY------ 54
ME NKDEA R I+ K + A +F KAQ LYP P++ A ++
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPDRALRFLEKAQRLYP----TPRVRALIESLNQKPQT 56
Query: 55 -----------------------ISAENKIGGEA-------------------DWYGILG 72
SA + GGE+ D+Y ILG
Sbjct: 57 AGDQPPPTDTTHATHRKAGGTDAPSANGEAGGESTKGYTAEQVAAVKRVKQCKDYYEILG 116
Query: 73 VTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQ 128
V+ A DE +KK YR+LAL HPDKN + GA AFK + A+ +LS+ KR +YDQ
Sbjct: 117 VSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
>sp|Q8TBM8|DJB14_HUMAN DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 78/173 (45%), Gaps = 50/173 (28%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENK 60
ME N+DEA + EI+ + A + A++F KA+ LYP +P A L++ + +
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYP----LPSARALLEIIMKNGST 56
Query: 61 IG---------------------------GEA-------------------DWYGILGVT 74
G GE ++Y +LGVT
Sbjct: 57 AGNSPHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNYYEVLGVT 116
Query: 75 PQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD 127
A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q149L6|DJB14_MOUSE DnaJ homolog subfamily B member 14 OS=Mus musculus GN=Dnajb14 PE=2
SV=1
Length = 379
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 50/173 (28%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENK 60
ME N+DEA + +I+ + +A + A++F KA+ LYP +P A L++ + +
Sbjct: 1 MEGNRDEAEKCVQIAREALSAGNRDKAQRFLQKAEKLYP----LPAARALLEIIMKNGST 56
Query: 61 IG---------GEAD-------------------------------------WYGILGVT 74
G G +D +Y +LGVT
Sbjct: 57 AGSSTHCRKPPGSSDQSKPSCGKDGTSGAGEGGKVYTKDQVEGVLSINKCKNYYEVLGVT 116
Query: 75 PQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD 127
A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2
SV=2
Length = 376
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 76/177 (42%), Gaps = 53/177 (29%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVY------ 54
ME NKDEA R I+ K + A +F KAQ LYP P++ A ++
Sbjct: 1 MESNKDEAERCISIALKAIQSNQPERALRFLEKAQRLYP----TPRVSALIESLNQKPQS 56
Query: 55 -------------------------------------------ISAENKIGGEADWYGIL 71
++A ++ D+Y IL
Sbjct: 57 TGDHPQPTDTTHTTTKKAGGTETPSANGEAGGGESAKGYTSEQVAAVKRVKQCKDYYEIL 116
Query: 72 GVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQ 128
GV+ A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YDQ
Sbjct: 117 GVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 173
>sp|Q5R6H3|DJB14_PONAB DnaJ homolog subfamily B member 14 OS=Pongo abelii GN=DNAJB14 PE=2
SV=1
Length = 379
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 50/173 (28%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENK 60
ME N+DEA + EI+ + A + A++F KA+ LYP +P A L++ + +
Sbjct: 1 MEGNRDEAEKCVEIAREALNAGNREKAQRFLQKAEKLYP----LPSARALLEIIMKNGST 56
Query: 61 IG---------------------------GEA-------------------DWYGILGVT 74
G GE + Y +LGVT
Sbjct: 57 AGNSPHCRKPSGSGDQSKPNCTKDSTSGSGEGGKGYTKDQVDGVLSINKCKNCYEVLGVT 116
Query: 75 PQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD 127
A DE +KK YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YD
Sbjct: 117 KDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD 169
>sp|Q7ZXQ8|DJB14_XENLA DnaJ homolog subfamily B member 14 OS=Xenopus laevis GN=dnajb14
PE=2 SV=1
Length = 371
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 38/164 (23%)
Query: 1 MECNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAEN- 59
ME N+DEA R I + A D A++F KA+ LYP E ++ L+ +A N
Sbjct: 1 MESNRDEAERCVRIGKAAIEAGDKEKARRFFSKAERLYPSSEA-RVLLDALEKNDTAGNG 59
Query: 60 ------------------------------------KIGGEADWYGILGVTPQADDETVK 83
+I +Y +LGV+P A +E +K
Sbjct: 60 PQSEKMSKSTEQPKAEKDSSGDTGKGHTQDQVDGVQRIKKCKTYYEVLGVSPDAGEEDLK 119
Query: 84 KQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD 127
K YRKLAL HPDKN + GA AFK + A+ +LS+ KR +YD
Sbjct: 120 KAYRKLALKFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYD 163
>sp|Q8TQR1|DNAJ_METAC Chaperone protein DnaJ OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=dnaJ PE=3 SV=1
Length = 382
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG+ A E +KK YRKLAL HPD+NK GA+ FK +SEA+ +LSD KRA+
Sbjct: 6 DYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQ 65
Query: 126 YDQ 128
YD+
Sbjct: 66 YDR 68
>sp|Q9UXR9|DNAJ_METTE Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3
SV=1
Length = 387
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG++ A E +KK YRKLAL HPD+NK GA+ FK +SEA+ +LSD KRA+
Sbjct: 6 DYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQ 65
Query: 126 YDQ 128
YD+
Sbjct: 66 YDR 68
>sp|P0CW06|DNAJ_METMZ Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1
Length = 389
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG++ + E +KK YRKLAL HPD+NK GA+ FK +SEA+ +LSD KRA+
Sbjct: 6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 126 YDQ 128
YD+
Sbjct: 66 YDR 68
>sp|P0CW07|DNAJ_METMA Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=dnaJ
PE=3 SV=1
Length = 389
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG++ + E +KK YRKLAL HPD+NK GA+ FK +SEA+ +LSD KRA+
Sbjct: 6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQ 65
Query: 126 YDQ 128
YD+
Sbjct: 66 YDR 68
>sp|Q87VN8|CBPA_PSESM Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=cbpA PE=3 SV=1
Length = 314
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y IL V P ADD+ +K YRKLA HPD +K GA+ FK SEA+ +LS KRAE
Sbjct: 5 DYYKILDVEPAADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAE 64
Query: 126 YDQ-RRNGKAFQKVSTASGGTSTATAANGFYNFT 158
YD+ R+ G+ + T G S A A G + T
Sbjct: 65 YDELRKYGRQGRPFQTPPGWQSRAGAGAGGFEET 98
>sp|A0AIS3|DNAJ_LISW6 Chaperone protein DnaJ OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1
Length = 376
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LG++ A + +KK YRKL+ HPD NK GAD FK +SEA+ +LSD KRA+
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q32HR2|CBPA_SHIDS Curved DNA-binding protein OS=Shigella dysenteriae serotype 1
(strain Sd197) GN=cbpA PE=3 SV=1
Length = 306
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAHFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQKVSTASGGTS 146
YD Q RN F + S G S
Sbjct: 65 YDQMWQHRNDPQFNRQFHHSDGQS 88
>sp|B7LFA9|CBPA_ECO55 Curved DNA-binding protein OS=Escherichia coli (strain 55989 /
EAEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQKVSTASGGTS 146
YD Q RN F + S G S
Sbjct: 65 YDQMWQHRNDPQFNRQFHHSDGQS 88
>sp|Q49Y21|DNAJ_STAS1 Chaperone protein DnaJ OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ
PE=3 SV=1
Length = 378
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LGV+ A + +KK YRKL+ HPD NK GAD FK +SEA+ +LSD+ KRA
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q6KHF9|DNAJ_MYCMO Chaperone protein DnaJ OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=dnaJ PE=3 SV=1
Length = 373
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG+T A + +KK YR LA HPD NK A+ FK ++EA+ +L+D KR +
Sbjct: 4 DYYEILGLTKSASKDEIKKAYRTLAKTYHPDVNKETNAEEKFKEITEAYEILNDDVKREQ 63
Query: 126 YDQRRNGKAFQKVSTASGGTSTATAANGFYNFTKPSAKASKSTPRSGHSSTPSHKLKPNT 185
Y+Q + AF + GG + T A GF F+ S S T G S + PN
Sbjct: 64 YNQFGHA-AFDPNAGGFGGQNPFTNAEGFSGFSDFSGFGSIFTDFFGGFGN-SQRANPNR 121
Query: 186 FWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETA 223
R + ++ +++ ++L EP ET
Sbjct: 122 ----AQRGEDRHAVIKISFIDSVLGKEIVEPLEKFETC 155
>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2
SV=1
Length = 370
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILGV+ A D +KK YR+LA HPD NK GA+ FK V EA+ +LSD KRA
Sbjct: 6 DFYEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDGAEAKFKEVQEAYEVLSDSQKRAN 65
Query: 126 YDQ 128
YDQ
Sbjct: 66 YDQ 68
>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=dnaJ PE=3 SV=1
Length = 376
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LGV+ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=dnaJ PE=3 SV=1
Length = 376
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LGV+ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q57QP2|CBPA_SALCH Curved DNA-binding protein OS=Salmonella choleraesuis (strain
SC-B67) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPNAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2
SV=1
Length = 337
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG+ A DE +KK YRK AL HPDKNKS A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YDQ 128
YDQ
Sbjct: 64 YDQ 66
>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1
SV=1
Length = 337
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG+ A DE +KK YRK AL HPDKNKS A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YDQ 128
YDQ
Sbjct: 64 YDQ 66
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2
SV=1
Length = 337
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y ILG+ A DE VKK YRK AL HPDKNKS A+ FK V+EA+ +LSD KR
Sbjct: 4 DYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREI 63
Query: 126 YDQ 128
YDQ
Sbjct: 64 YDQ 66
>sp|A9MH53|CBPA_SALAR Curved DNA-binding protein OS=Salmonella arizonae (strain ATCC
BAA-731 / CDC346-86 / RSK2980) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|P63263|CBPA_SALTY Curved DNA-binding protein OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|P63262|CBPA_SALTI Curved DNA-binding protein OS=Salmonella typhi GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B4TSM3|CBPA_SALSV Curved DNA-binding protein OS=Salmonella schwarzengrund (strain
CVM19633) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B5BBH2|CBPA_SALPK Curved DNA-binding protein OS=Salmonella paratyphi A (strain
AKU_12601) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|C0Q893|CBPA_SALPC Curved DNA-binding protein OS=Salmonella paratyphi C (strain
RKS4594) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|A9N6S2|CBPA_SALPB Curved DNA-binding protein OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|Q5PGA2|CBPA_SALPA Curved DNA-binding protein OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B4T2U5|CBPA_SALNS Curved DNA-binding protein OS=Salmonella newport (strain SL254)
GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B4TEN5|CBPA_SALHS Curved DNA-binding protein OS=Salmonella heidelberg (strain SL476)
GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B5R6G3|CBPA_SALG2 Curved DNA-binding protein OS=Salmonella gallinarum (strain 287/91
/ NCTC 13346) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B5R049|CBPA_SALEP Curved DNA-binding protein OS=Salmonella enteritidis PT4 (strain
P125109) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B5FR40|CBPA_SALDC Curved DNA-binding protein OS=Salmonella dublin (strain
CT_02021853) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|B5F1Z5|CBPA_SALA4 Curved DNA-binding protein OS=Salmonella agona (strain SL483)
GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQLWQHRNDPQFNR 79
>sp|Q8CP18|DNAJ_STAES Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC
12228) GN=dnaJ PE=3 SV=1
Length = 373
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LGV A + +KK YRKL+ HPD NK GAD FK +SEA+ +LSD+ KRA
Sbjct: 5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRAN 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1
Length = 377
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LG++ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=dnaJ PE=3 SV=1
Length = 376
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LG++ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a
(strain 10403S) GN=dnaJ PE=3 SV=1
Length = 377
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LG++ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=dnaJ PE=3 SV=1
Length = 376
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y +LG++ A + +KK YRKL+ HPD NK GAD FK +SEA+ LSD KRA+
Sbjct: 5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQ 64
Query: 126 YDQ 128
YDQ
Sbjct: 65 YDQ 67
>sp|B7NLC5|CBPA_ECO7I Curved DNA-binding protein OS=Escherichia coli O7:K1 (strain IAI39
/ ExPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQKVSTASGGTS 146
YD Q RN F + G S
Sbjct: 65 YDQMWQHRNDPQFSRQFQHGDGQS 88
>sp|Q1RDL6|CBPA_ECOUT Curved DNA-binding protein OS=Escherichia coli (strain UTI89 /
UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQMWQHRNDPQFNR 79
>sp|B1LJ04|CBPA_ECOSM Curved DNA-binding protein OS=Escherichia coli (strain SMS-3-5 /
SECEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQKVSTASGGTS 146
YD Q RN F + G S
Sbjct: 65 YDQMWQHRNDPQFSRQFQHGDGQS 88
>sp|Q8FJ50|CBPA_ECOL6 Curved DNA-binding protein OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQMWQHRNDPQFNR 79
>sp|Q0TJ66|CBPA_ECOL5 Curved DNA-binding protein OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=cbpA PE=3 SV=1
Length = 306
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQMWQHRNDPQFNR 79
>sp|A1A9Q7|CBPA_ECOK1 Curved DNA-binding protein OS=Escherichia coli O1:K1 / APEC GN=cbpA
PE=3 SV=1
Length = 306
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAE 125
D+Y I+GV P D +T+K YR+LA HPD +K A+ FK V+EAW +LSD+ +RAE
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64
Query: 126 YD---QRRNGKAFQK 137
YD Q RN F +
Sbjct: 65 YDQMWQHRNDPQFNR 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,967,226
Number of Sequences: 539616
Number of extensions: 13557422
Number of successful extensions: 44565
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 273
Number of HSP's that attempted gapping in prelim test: 41953
Number of HSP's gapped (non-prelim): 2254
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)