Query 003641
Match_columns 806
No_of_seqs 392 out of 2319
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 7E-83 1.5E-87 653.6 22.8 212 489-701 4-217 (217)
2 COG0484 DnaJ DnaJ-class molecu 100.0 7.8E-29 1.7E-33 270.5 11.5 166 64-233 3-209 (371)
3 PRK14296 chaperone protein Dna 99.9 1.1E-22 2.4E-27 225.6 11.1 69 64-132 3-71 (372)
4 PRK14288 chaperone protein Dna 99.9 5.2E-22 1.1E-26 220.1 9.6 69 64-132 2-71 (369)
5 PRK14298 chaperone protein Dna 99.9 1.7E-21 3.7E-26 216.5 13.3 69 64-132 4-72 (377)
6 PRK14276 chaperone protein Dna 99.9 2.3E-21 5E-26 215.7 12.7 69 64-132 3-71 (380)
7 PRK14286 chaperone protein Dna 99.8 3.5E-21 7.6E-26 213.7 12.4 69 64-132 3-72 (372)
8 PRK14280 chaperone protein Dna 99.8 5.7E-21 1.2E-25 212.3 13.2 68 65-132 4-71 (376)
9 PRK14287 chaperone protein Dna 99.8 4.7E-21 1E-25 212.6 12.4 69 64-132 3-71 (371)
10 PRK14278 chaperone protein Dna 99.8 5.2E-21 1.1E-25 212.7 12.5 68 65-132 3-70 (378)
11 PRK14279 chaperone protein Dna 99.8 5.3E-21 1.1E-25 213.6 12.3 68 64-131 8-76 (392)
12 KOG0712 Molecular chaperone (D 99.8 5.6E-21 1.2E-25 206.7 11.9 69 64-134 3-71 (337)
13 PRK14301 chaperone protein Dna 99.8 1.1E-20 2.5E-25 209.7 11.4 69 64-132 3-72 (373)
14 PRK14277 chaperone protein Dna 99.8 2.9E-20 6.4E-25 207.3 13.5 69 64-132 4-73 (386)
15 PRK14285 chaperone protein Dna 99.8 2.2E-20 4.7E-25 207.0 12.3 68 65-132 3-71 (365)
16 PRK14282 chaperone protein Dna 99.8 2.9E-20 6.4E-25 206.2 13.3 69 64-132 3-73 (369)
17 PRK14295 chaperone protein Dna 99.8 3.8E-20 8.1E-25 206.6 13.8 65 64-128 8-73 (389)
18 PRK14294 chaperone protein Dna 99.8 2.8E-20 6.1E-25 206.1 12.6 69 64-132 3-72 (366)
19 PRK10767 chaperone protein Dna 99.8 3.9E-20 8.5E-25 205.2 13.2 69 64-132 3-72 (371)
20 PRK14297 chaperone protein Dna 99.8 2.7E-20 5.9E-25 207.1 11.9 68 65-132 4-72 (380)
21 PRK14283 chaperone protein Dna 99.8 5.5E-20 1.2E-24 204.6 13.9 69 64-132 4-72 (378)
22 PRK14284 chaperone protein Dna 99.8 7.2E-20 1.6E-24 204.5 14.1 69 65-133 1-70 (391)
23 PRK14291 chaperone protein Dna 99.8 1.1E-19 2.3E-24 202.6 15.0 70 64-133 2-71 (382)
24 TIGR02349 DnaJ_bact chaperone 99.8 7.8E-20 1.7E-24 201.6 13.3 68 66-133 1-68 (354)
25 PTZ00037 DnaJ_C chaperone prot 99.8 2.4E-20 5.3E-25 209.6 8.5 149 64-232 27-177 (421)
26 PRK14300 chaperone protein Dna 99.8 1.2E-19 2.5E-24 201.6 12.1 68 65-132 3-70 (372)
27 KOG0713 Molecular chaperone (D 99.8 1.2E-19 2.5E-24 194.7 8.0 72 62-133 13-85 (336)
28 PRK14293 chaperone protein Dna 99.8 5.3E-19 1.1E-23 196.5 12.5 68 65-132 3-70 (374)
29 PRK14281 chaperone protein Dna 99.8 2.2E-19 4.9E-24 200.9 8.7 164 65-233 3-191 (397)
30 PRK14289 chaperone protein Dna 99.8 6.5E-19 1.4E-23 196.5 12.0 69 64-132 4-73 (386)
31 PRK14292 chaperone protein Dna 99.8 3.7E-19 7.9E-24 197.6 8.8 161 65-233 2-169 (371)
32 KOG0624 dsRNA-activated protei 99.8 2.6E-18 5.6E-23 184.0 13.3 127 4-134 337-467 (504)
33 PRK14290 chaperone protein Dna 99.8 8E-19 1.7E-23 194.5 8.9 162 65-233 3-177 (365)
34 PRK14299 chaperone protein Dna 99.7 3.9E-17 8.6E-22 176.0 6.3 69 64-132 3-71 (291)
35 KOG0715 Molecular chaperone (D 99.6 2.4E-16 5.2E-21 169.6 8.9 139 65-224 43-181 (288)
36 PRK10266 curved DNA-binding pr 99.6 5E-16 1.1E-20 168.5 8.2 67 65-131 4-70 (306)
37 PF00226 DnaJ: DnaJ domain; I 99.6 1.6E-15 3.5E-20 127.2 6.4 62 66-127 1-64 (64)
38 KOG0716 Molecular chaperone (D 99.6 3.1E-15 6.8E-20 156.5 6.2 71 64-134 30-101 (279)
39 KOG0717 Molecular chaperone (D 99.5 3.3E-15 7.2E-20 165.0 5.7 70 63-132 6-77 (508)
40 KOG0691 Molecular chaperone (D 99.5 5E-15 1.1E-19 159.1 6.8 70 64-133 4-74 (296)
41 KOG0550 Molecular chaperone (D 99.5 1.7E-14 3.6E-19 158.2 10.4 118 11-133 324-443 (486)
42 PTZ00341 Ring-infected erythro 99.5 1.5E-14 3.3E-19 171.4 7.5 71 62-132 570-640 (1136)
43 KOG0718 Molecular chaperone (D 99.5 1.9E-14 4.1E-19 159.0 6.2 70 64-133 8-81 (546)
44 KOG0719 Molecular chaperone (D 99.5 5.3E-14 1.2E-18 144.3 6.5 72 62-133 11-85 (264)
45 smart00271 DnaJ DnaJ molecular 99.4 8.9E-14 1.9E-18 114.8 5.4 57 65-121 1-59 (60)
46 cd06257 DnaJ DnaJ domain or J- 99.4 2.4E-13 5.1E-18 110.2 6.0 54 66-119 1-55 (55)
47 KOG0721 Molecular chaperone (D 99.4 5.6E-13 1.2E-17 135.8 9.0 73 62-134 96-169 (230)
48 COG2214 CbpA DnaJ-class molecu 99.4 4.7E-13 1E-17 133.7 7.0 67 64-130 5-73 (237)
49 TIGR03835 termin_org_DnaJ term 99.4 7.3E-13 1.6E-17 154.4 7.7 68 65-132 2-69 (871)
50 KOG0720 Molecular chaperone (D 99.3 7.7E-13 1.7E-17 146.6 5.8 70 63-132 233-302 (490)
51 PHA03102 Small T antigen; Revi 99.3 2E-12 4.4E-17 127.2 5.8 65 65-132 5-71 (153)
52 PRK05014 hscB co-chaperone Hsc 99.2 2.8E-11 6.1E-16 121.5 7.5 67 65-131 1-75 (171)
53 PRK01356 hscB co-chaperone Hsc 99.2 3.8E-11 8.1E-16 120.1 7.2 67 65-131 2-74 (166)
54 KOG0722 Molecular chaperone (D 99.1 5.2E-11 1.1E-15 123.7 5.7 70 62-131 30-99 (329)
55 PRK00294 hscB co-chaperone Hsc 99.1 1.3E-10 2.7E-15 117.0 8.0 69 63-131 2-78 (173)
56 KOG0714 Molecular chaperone (D 99.1 4.4E-11 9.5E-16 125.4 4.2 68 64-131 2-71 (306)
57 PRK03578 hscB co-chaperone Hsc 99.1 1.7E-10 3.8E-15 116.4 7.6 69 63-131 4-80 (176)
58 PTZ00100 DnaJ chaperone protei 99.0 5.4E-10 1.2E-14 105.3 5.5 52 64-118 64-115 (116)
59 PHA02624 large T antigen; Prov 98.9 4.1E-09 8.9E-14 122.5 10.0 59 65-126 11-71 (647)
60 PRK09430 djlA Dna-J like membr 98.9 2E-09 4.2E-14 115.4 5.6 55 65-119 200-262 (267)
61 KOG1150 Predicted molecular ch 98.8 4.8E-09 1E-13 106.0 5.6 64 64-127 52-117 (250)
62 COG5407 SEC63 Preprotein trans 98.8 7.3E-09 1.6E-13 114.8 5.6 72 63-134 96-173 (610)
63 COG5269 ZUO1 Ribosome-associat 98.6 4.2E-08 9.1E-13 103.1 6.0 79 53-131 31-115 (379)
64 PRK01773 hscB co-chaperone Hsc 98.6 8E-08 1.7E-12 96.9 7.4 67 65-131 2-76 (173)
65 TIGR00714 hscB Fe-S protein as 98.5 1.5E-07 3.2E-12 93.6 6.8 55 77-131 3-63 (157)
66 KOG0568 Molecular chaperone (D 97.7 4.4E-05 9.6E-10 79.2 5.5 56 65-120 47-103 (342)
67 KOG1789 Endocytosis protein RM 97.6 0.00011 2.5E-09 88.4 8.3 54 64-119 1280-1337(2235)
68 KOG0723 Molecular chaperone (D 97.0 0.0011 2.4E-08 61.7 5.5 49 69-120 60-108 (112)
69 KOG0431 Auxilin-like protein a 96.0 0.0093 2E-07 68.9 5.8 69 42-117 372-448 (453)
70 COG1076 DjlA DnaJ-domain-conta 94.8 0.069 1.5E-06 54.2 6.6 52 65-116 113-172 (174)
71 KOG3192 Mitochondrial J-type c 94.7 0.043 9.3E-07 54.7 4.9 71 62-132 5-83 (168)
72 PF00684 DnaJ_CXXCXGXG: DnaJ c 91.5 0.24 5.3E-06 42.4 4.0 49 183-231 11-66 (66)
73 COG1076 DjlA DnaJ-domain-conta 91.1 0.21 4.5E-06 50.7 3.7 66 66-131 2-75 (174)
74 TIGR02098 MJ0042_CXXC MJ0042 f 89.0 0.28 6.2E-06 37.3 2.1 33 188-220 3-38 (38)
75 PF07719 TPR_2: Tetratricopept 88.8 1.1 2.3E-05 32.0 4.9 33 8-40 1-33 (34)
76 PF03656 Pam16: Pam16; InterP 87.1 1.6 3.5E-05 42.5 6.4 53 68-123 61-113 (127)
77 KOG0624 dsRNA-activated protei 86.3 3.4 7.3E-05 46.6 9.0 111 4-116 34-158 (504)
78 PF11926 DUF3444: Domain of un 85.3 1.4 3.1E-05 46.5 5.5 76 514-598 124-210 (217)
79 COG0484 DnaJ DnaJ-class molecu 84.3 0.76 1.6E-05 52.0 3.0 50 179-233 119-171 (371)
80 PF00515 TPR_1: Tetratricopept 84.2 2.6 5.7E-05 30.3 4.9 33 8-40 1-33 (34)
81 PF13428 TPR_14: Tetratricopep 84.1 2.1 4.4E-05 33.3 4.6 39 11-49 4-42 (44)
82 PF13414 TPR_11: TPR repeat; P 82.2 1.9 4E-05 35.8 3.9 47 7-53 2-48 (69)
83 PF13719 zinc_ribbon_5: zinc-r 82.2 0.85 1.8E-05 35.0 1.7 32 187-218 2-36 (37)
84 PF14369 zf-RING_3: zinc-finge 79.9 1.8 3.8E-05 33.0 2.7 32 185-219 2-33 (35)
85 PRK14281 chaperone protein Dna 79.0 1.8 3.9E-05 49.6 3.7 47 187-233 179-231 (397)
86 PRK14290 chaperone protein Dna 78.5 1.3 2.7E-05 50.2 2.2 47 187-233 165-217 (365)
87 PF13717 zinc_ribbon_4: zinc-r 73.1 2.3 5E-05 32.5 1.7 31 188-218 3-36 (36)
88 PF14205 Cys_rich_KTR: Cystein 70.3 3.5 7.5E-05 34.6 2.2 34 185-218 2-39 (55)
89 PF14853 Fis1_TPR_C: Fis1 C-te 70.2 13 0.00028 30.9 5.6 45 12-56 5-49 (53)
90 PRK14292 chaperone protein Dna 69.2 3.3 7.1E-05 46.9 2.6 47 187-233 157-209 (371)
91 TIGR02642 phage_xxxx uncharact 68.9 3.4 7.4E-05 42.8 2.4 27 207-233 99-127 (186)
92 PF13414 TPR_11: TPR repeat; P 67.9 4.4 9.4E-05 33.5 2.5 37 3-39 32-69 (69)
93 KOG4234 TPR repeat-containing 67.4 15 0.00032 39.0 6.6 40 4-43 91-130 (271)
94 KOG0553 TPR repeat-containing 67.4 19 0.0004 40.0 7.7 40 4-43 77-116 (304)
95 PTZ00037 DnaJ_C chaperone prot 67.1 3.6 7.9E-05 47.6 2.4 46 188-233 167-220 (421)
96 PRK14285 chaperone protein Dna 65.8 4.6 0.0001 45.7 2.9 48 181-233 125-175 (365)
97 PF13181 TPR_8: Tetratricopept 65.0 12 0.00026 26.7 4.0 32 9-40 2-33 (34)
98 PRK14278 chaperone protein Dna 64.8 4.4 9.5E-05 46.1 2.5 11 32-42 26-36 (378)
99 PF13432 TPR_16: Tetratricopep 63.8 9.8 0.00021 31.2 3.8 41 13-53 2-42 (65)
100 PRK14298 chaperone protein Dna 63.7 3.6 7.7E-05 46.9 1.5 51 178-233 117-170 (377)
101 KOG0724 Zuotin and related mol 63.5 6.5 0.00014 43.6 3.5 55 76-130 3-62 (335)
102 COG3097 Uncharacterized protei 62.5 9.1 0.0002 35.5 3.5 36 507-545 27-62 (106)
103 PRK00398 rpoP DNA-directed RNA 61.6 7 0.00015 31.1 2.4 31 188-220 4-34 (46)
104 PLN03088 SGT1, suppressor of 61.6 73 0.0016 35.9 11.4 44 9-52 3-46 (356)
105 PRK14284 chaperone protein Dna 59.5 6.3 0.00014 45.0 2.6 49 180-233 136-187 (391)
106 PF13174 TPR_6: Tetratricopept 59.3 15 0.00033 25.6 3.7 30 11-40 3-32 (33)
107 PF13371 TPR_9: Tetratricopept 59.2 14 0.00031 30.7 4.1 39 15-53 2-40 (73)
108 PF14559 TPR_19: Tetratricopep 58.8 13 0.00029 30.4 3.8 36 18-53 1-36 (68)
109 COG3063 PilF Tfp pilus assembl 58.6 59 0.0013 35.2 9.2 74 4-99 30-104 (250)
110 PRK14300 chaperone protein Dna 57.8 6.8 0.00015 44.5 2.4 23 209-231 186-208 (372)
111 PRK14294 chaperone protein Dna 57.8 7.4 0.00016 44.1 2.7 45 188-232 162-208 (366)
112 PF14863 Alkyl_sulf_dimr: Alky 57.7 12 0.00027 37.0 3.9 51 8-58 70-120 (141)
113 PRK10767 chaperone protein Dna 57.6 7.1 0.00015 44.3 2.5 8 34-41 29-36 (371)
114 PRK14289 chaperone protein Dna 57.4 7.7 0.00017 44.2 2.8 25 208-232 198-222 (386)
115 PRK14280 chaperone protein Dna 57.2 7.5 0.00016 44.2 2.6 44 184-232 125-171 (376)
116 PRK14295 chaperone protein Dna 56.6 6.4 0.00014 45.0 2.0 45 183-232 147-194 (389)
117 PRK14297 chaperone protein Dna 56.3 8 0.00017 44.0 2.7 43 184-231 130-175 (380)
118 PRK14279 chaperone protein Dna 55.9 4.1 8.8E-05 46.7 0.2 51 178-233 149-202 (392)
119 PF14559 TPR_19: Tetratricopep 55.7 9.4 0.0002 31.3 2.4 42 9-50 26-67 (68)
120 PF10475 DUF2450: Protein of u 55.1 62 0.0014 35.4 9.2 86 9-120 128-213 (291)
121 PRK14287 chaperone protein Dna 55.0 9.3 0.0002 43.4 2.9 29 185-218 121-149 (371)
122 PRK14301 chaperone protein Dna 53.8 8.1 0.00018 43.9 2.2 45 183-232 125-172 (373)
123 PLN03165 chaperone protein dna 53.8 10 0.00022 36.3 2.4 42 189-233 54-98 (111)
124 PF13446 RPT: A repeated domai 53.0 31 0.00066 29.0 5.0 25 67-91 7-31 (62)
125 smart00028 TPR Tetratricopepti 52.8 26 0.00056 22.5 3.8 30 11-40 4-33 (34)
126 PRK14293 chaperone protein Dna 51.3 9.2 0.0002 43.5 2.1 26 208-233 187-212 (374)
127 PRK14283 chaperone protein Dna 50.9 11 0.00025 42.8 2.8 47 182-233 126-175 (378)
128 PF03704 BTAD: Bacterial trans 50.2 71 0.0015 30.4 7.8 43 11-53 65-107 (146)
129 PRK14276 chaperone protein Dna 49.8 11 0.00024 43.0 2.4 47 182-233 126-175 (380)
130 TIGR02349 DnaJ_bact chaperone 49.1 10 0.00023 42.6 2.1 48 181-233 122-172 (354)
131 KOG4234 TPR repeat-containing 48.7 28 0.0006 37.0 4.9 78 8-89 134-211 (271)
132 PRK05685 fliS flagellar protei 48.6 53 0.0011 32.0 6.6 36 6-41 33-68 (132)
133 TIGR02642 phage_xxxx uncharact 48.3 14 0.00029 38.5 2.6 31 188-222 100-130 (186)
134 PRK00464 nrdR transcriptional 47.3 10 0.00022 38.2 1.5 36 189-224 2-45 (154)
135 KOG0714 Molecular chaperone (D 46.4 5.4 0.00012 41.9 -0.7 113 5-131 2-152 (306)
136 KOG2041 WD40 repeat protein [G 46.4 1.3E+02 0.0029 37.2 10.4 53 64-127 1047-1099(1189)
137 COG1198 PriA Primosomal protei 46.4 15 0.00032 45.5 2.9 42 186-230 443-484 (730)
138 PRK14291 chaperone protein Dna 46.3 15 0.00032 41.9 2.8 46 183-233 137-185 (382)
139 PRK14282 chaperone protein Dna 46.0 9.4 0.0002 43.3 1.2 51 178-233 128-181 (369)
140 KOG0543 FKBP-type peptidyl-pro 46.0 19 0.00041 41.4 3.5 42 12-53 295-336 (397)
141 PF13176 TPR_7: Tetratricopept 45.9 38 0.00083 25.1 4.1 30 11-40 2-31 (36)
142 PRK14277 chaperone protein Dna 45.7 14 0.0003 42.2 2.5 46 182-232 135-183 (386)
143 PF10263 SprT-like: SprT-like 44.4 16 0.00035 35.7 2.4 37 184-220 120-156 (157)
144 PF13432 TPR_16: Tetratricopep 44.3 49 0.0011 27.0 4.9 35 7-41 30-64 (65)
145 PF00684 DnaJ_CXXCXGXG: DnaJ c 43.4 21 0.00046 30.6 2.6 31 182-217 36-66 (66)
146 smart00834 CxxC_CXXC_SSSS Puta 42.7 33 0.00072 26.0 3.4 32 185-216 3-35 (41)
147 PF13371 TPR_9: Tetratricopept 42.6 49 0.0011 27.4 4.8 46 4-49 25-70 (73)
148 PF11817 Foie-gras_1: Foie gra 42.3 62 0.0013 34.5 6.6 48 4-52 174-221 (247)
149 PF07219 HemY_N: HemY protein 42.0 65 0.0014 30.1 5.9 45 5-50 56-100 (108)
150 TIGR03504 FimV_Cterm FimV C-te 41.7 39 0.00084 27.1 3.7 25 12-36 3-27 (44)
151 smart00531 TFIIE Transcription 41.7 12 0.00025 37.1 0.9 36 187-222 99-138 (147)
152 PRK11827 hypothetical protein; 41.7 15 0.00032 31.5 1.4 29 188-218 9-37 (60)
153 PRK06266 transcription initiat 41.6 14 0.00031 37.9 1.6 32 189-221 119-150 (178)
154 KOG0547 Translocase of outer m 41.2 50 0.0011 39.2 5.9 50 6-55 113-162 (606)
155 PF13453 zf-TFIIB: Transcripti 40.1 13 0.00028 29.0 0.7 30 190-219 2-31 (41)
156 PLN03088 SGT1, suppressor of 38.5 50 0.0011 37.2 5.4 82 7-90 35-118 (356)
157 PRK14286 chaperone protein Dna 37.7 12 0.00026 42.5 0.4 51 178-233 126-179 (372)
158 TIGR00373 conserved hypothetic 36.7 16 0.00035 36.7 1.0 33 188-221 110-142 (158)
159 TIGR02552 LcrH_SycD type III s 35.9 1.2E+02 0.0025 28.1 6.7 50 3-52 12-61 (135)
160 KOG3824 Huntingtin interacting 35.2 1.2E+02 0.0027 34.2 7.5 75 3-80 111-186 (472)
161 PRK15174 Vi polysaccharide exp 34.9 1.1E+02 0.0025 37.3 8.0 112 13-126 289-413 (656)
162 TIGR00990 3a0801s09 mitochondr 34.8 3.1E+02 0.0067 32.9 11.6 34 7-40 126-159 (615)
163 PF13374 TPR_10: Tetratricopep 34.2 91 0.002 22.6 4.6 33 9-41 3-35 (42)
164 PF09723 Zn-ribbon_8: Zinc rib 34.1 53 0.0012 25.8 3.4 32 185-216 3-35 (42)
165 PRK10370 formate-dependent nit 32.9 2.3E+02 0.0051 29.1 8.9 44 6-49 71-114 (198)
166 TIGR02605 CxxC_CxxC_SSSS putat 32.4 85 0.0019 25.2 4.4 32 185-216 3-35 (52)
167 COG2835 Uncharacterized conser 32.4 26 0.00055 30.1 1.4 30 188-219 9-38 (60)
168 PRK10866 outer membrane biogen 31.7 2.6E+02 0.0056 29.9 9.2 36 9-44 33-68 (243)
169 TIGR02552 LcrH_SycD type III s 31.5 1.1E+02 0.0023 28.3 5.6 45 9-53 52-96 (135)
170 PRK05978 hypothetical protein; 31.2 25 0.00055 35.3 1.4 36 184-220 30-65 (148)
171 PF09538 FYDLN_acid: Protein o 30.8 26 0.00056 33.4 1.3 10 208-217 27-36 (108)
172 COG1379 PHP family phosphoeste 30.7 13 0.00028 41.6 -0.8 34 184-218 243-276 (403)
173 PRK05654 acetyl-CoA carboxylas 30.6 24 0.00052 39.0 1.2 35 183-218 23-57 (292)
174 TIGR00515 accD acetyl-CoA carb 30.3 25 0.00055 38.8 1.3 35 183-218 22-56 (285)
175 CHL00174 accD acetyl-CoA carbo 29.7 29 0.00062 38.6 1.6 35 183-218 34-68 (296)
176 cd04708 BAH_plantDCM_II BAH, o 29.5 80 0.0017 33.3 4.7 53 492-551 11-71 (202)
177 COG5552 Uncharacterized conser 29.5 1.5E+02 0.0033 26.6 5.7 48 65-112 3-50 (88)
178 PF09788 Tmemb_55A: Transmembr 29.4 67 0.0014 35.0 4.2 35 182-216 152-186 (256)
179 KOG2813 Predicted molecular ch 29.1 29 0.00062 38.9 1.4 39 188-238 235-273 (406)
180 PRK14288 chaperone protein Dna 28.8 59 0.0013 37.0 3.9 46 188-233 157-204 (369)
181 PF14561 TPR_20: Tetratricopep 28.7 3.7E+02 0.008 24.4 8.4 48 6-53 20-70 (90)
182 PRK15359 type III secretion sy 28.6 97 0.0021 30.1 5.0 46 7-52 57-102 (144)
183 COG0777 AccD Acetyl-CoA carbox 28.0 33 0.00072 37.7 1.7 35 183-218 24-58 (294)
184 PF15469 Sec5: Exocyst complex 28.0 1.4E+02 0.0031 30.1 6.2 77 16-99 94-174 (182)
185 KOG0543 FKBP-type peptidyl-pro 27.7 93 0.002 36.0 5.2 78 12-93 261-338 (397)
186 TIGR02300 FYDLN_acid conserved 27.6 45 0.00098 32.7 2.3 30 204-233 6-35 (129)
187 PRK14873 primosome assembly pr 27.1 46 0.001 40.9 2.9 41 185-229 390-430 (665)
188 PRK10866 outer membrane biogen 26.6 6.3E+02 0.014 26.9 11.1 34 12-45 73-106 (243)
189 PF14687 DUF4460: Domain of un 26.5 1.1E+02 0.0023 29.3 4.7 43 76-118 5-52 (112)
190 PF09538 FYDLN_acid: Protein o 26.2 50 0.0011 31.5 2.3 31 204-234 6-36 (108)
191 PLN03165 chaperone protein dna 25.1 67 0.0015 30.8 3.0 28 184-220 72-99 (111)
192 COG1516 FliS Flagellin-specifi 24.8 1.4E+02 0.0029 29.7 5.1 36 6-41 29-64 (132)
193 TIGR03302 OM_YfiO outer membra 24.7 1.2E+02 0.0025 31.1 5.0 33 12-44 170-202 (235)
194 smart00731 SprT SprT homologue 24.7 49 0.0011 32.5 2.1 36 184-219 109-145 (146)
195 TIGR01206 lysW lysine biosynth 24.5 57 0.0012 27.4 2.1 36 189-224 4-39 (54)
196 PRK14296 chaperone protein Dna 23.9 57 0.0012 37.2 2.7 57 177-233 156-218 (372)
197 PF10041 DUF2277: Uncharacteri 23.7 3E+02 0.0065 24.9 6.4 45 65-109 3-47 (78)
198 smart00439 BAH Bromo adjacent 23.4 1.8E+02 0.0039 26.6 5.5 41 513-553 2-45 (120)
199 COG3809 Uncharacterized protei 23.2 51 0.0011 29.9 1.6 29 189-217 3-31 (88)
200 PF14346 DUF4398: Domain of un 23.1 1.5E+02 0.0032 27.3 4.9 32 6-37 43-74 (103)
201 PF04505 Dispanin: Interferon- 23.1 84 0.0018 28.3 3.1 24 15-38 44-67 (82)
202 PRK05580 primosome assembly pr 23.0 59 0.0013 40.0 2.8 39 188-229 391-429 (679)
203 TIGR02300 FYDLN_acid conserved 22.6 48 0.001 32.6 1.5 28 188-218 10-37 (129)
204 TIGR00595 priA primosomal prot 21.7 68 0.0015 38.1 2.9 39 188-229 223-261 (505)
205 PRK10370 formate-dependent nit 21.7 1.7E+02 0.0037 30.1 5.5 45 8-52 107-154 (198)
206 TIGR00100 hypA hydrogenase nic 21.6 65 0.0014 30.8 2.2 29 188-220 71-99 (115)
207 PRK12370 invasion protein regu 21.4 3.3E+02 0.0072 32.4 8.5 39 14-52 344-382 (553)
208 PLN03098 LPA1 LOW PSII ACCUMUL 20.9 3.3E+02 0.0071 32.3 8.0 38 6-43 73-110 (453)
209 PRK10803 tol-pal system protei 20.9 3.4E+02 0.0075 29.5 7.8 34 9-42 143-177 (263)
210 PF11833 DUF3353: Protein of u 20.8 2.5E+02 0.0054 29.4 6.4 38 74-118 1-38 (194)
211 PF14353 CpXC: CpXC protein 20.6 58 0.0013 31.1 1.7 31 188-218 2-49 (128)
212 PRK10803 tol-pal system protei 20.5 1.1E+03 0.024 25.6 12.6 68 12-98 184-251 (263)
213 COG1107 Archaea-specific RecJ- 20.4 54 0.0012 39.6 1.6 41 189-233 4-65 (715)
214 PF10571 UPF0547: Uncharacteri 20.3 53 0.0011 23.6 0.9 25 189-219 2-26 (26)
215 TIGR00208 fliS flagellar biosy 20.2 1.8E+02 0.0038 28.2 4.9 35 6-40 29-63 (124)
216 PRK11189 lipoprotein NlpI; Pro 20.2 3.1E+02 0.0068 29.8 7.4 34 12-45 102-135 (296)
217 COG5010 TadD Flp pilus assembl 20.1 1.7E+02 0.0037 32.0 5.2 38 14-51 106-143 (257)
218 cd00084 HMG-box High Mobility 20.1 2.6E+02 0.0056 22.6 5.3 44 83-130 12-55 (66)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=7e-83 Score=653.61 Aligned_cols=212 Identities=52% Similarity=1.002 Sum_probs=202.9
Q ss_pred CCCccccccCCCCCCCcccccccCCCCCCeEEEecCCCCCCcceeEEEEEeecCCceEEEEecccCCCCCCCCcceeeCC
Q 003641 489 VEALSINVPDPDFHDFDKDRTEKSFGDNQVWAAYDDDDGMPRYYAMIHGVISLNPFKMRISWLNSRTNSELGPLNWVASG 568 (806)
Q Consensus 489 ~~~~~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~s~~pFkl~iswLe~~~~~e~~~~~W~~~~ 568 (806)
..+..|+||||||||||++|++++|++|||||+||+.||||||||||+||++.+||+|||+|||++++++. +++|++++
T Consensus 4 ~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~-~~~w~~~~ 82 (217)
T PF11926_consen 4 SSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEE-EIRWEDEG 82 (217)
T ss_pred CCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCccc-ceeeeecC
Confidence 45788999999999999999999999999999999999999999999999987799999999999999986 89999999
Q ss_pred ceeeeeeeEecceeEeccCCceEEEEE-eeecCCCcEEEeCCCCeEEEEecCCCCCCCCCCcccccceeeEEEEeccCCC
Q 003641 569 FSKTCGDFRVGRYEVSNSLNSFSHKVR-WSKGSRGAIRIFPRKGDVWAIYRNWSPDWNELTADEVIHKYDMVEVLEDYNE 647 (806)
Q Consensus 569 lpv~CG~F~~~~~~~~~~~~~FSH~v~-~~~g~~~~y~IyPrkGEvWAlYk~Ws~~w~~~~~~~~~~~YdiVEVL~d~~~ 647 (806)
|||+||+|++|++.++.++++|||+|. +..|.++.|+|||||||||||||||+++|+.+++++..|+|||||||+||++
T Consensus 83 ~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~~ 162 (217)
T PF11926_consen 83 LPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYSE 162 (217)
T ss_pred CceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCCc
Confidence 999999999999999999999999985 7778899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeeEecCccceeeecCCCC-ceEEeCCCCccceecccCCeeecCCCCC
Q 003641 648 DHGVTVTPLVKVAGFKTVFHQHLDPR-EVRRIPREEMFRFSHHVPSYLLTGQEAP 701 (806)
Q Consensus 648 ~~gv~V~~L~Kv~Gf~svF~~~~~~~-~~~~Ip~~e~~RFSHqVPs~rltg~e~~ 701 (806)
+.||.|+||+||+||+|||+|..+.+ .++.||++||+|||||||||||||+|++
T Consensus 163 ~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~e 217 (217)
T PF11926_consen 163 EAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEGE 217 (217)
T ss_pred cCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccCC
Confidence 99999999999999999999997776 6799999999999999999999999963
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.8e-29 Score=270.51 Aligned_cols=166 Identities=30% Similarity=0.411 Sum_probs=117.2
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCC
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTAS 142 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (806)
.+|||+||||+++|+.+||||||||||++||||+|+ .++|+++|+.|+|||+|||||+||+.||++++.... .+++
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~---~gg~ 79 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK---AGGF 79 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc---cCCc
Confidence 579999999999999999999999999999999999 889999999999999999999999999999987663 1111
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCC---C---CCCCC-----------------------------CCCCCCCCCCCCce
Q 003641 143 GGTSTATAAN-GFYNFTKPSAKASK---S---TPRSG-----------------------------HSSTPSHKLKPNTF 186 (806)
Q Consensus 143 ~~~~~~~~~~-g~~~f~~~~~~~~~---~---~~~~~-----------------------------~~~~~~~~~~~~TF 186 (806)
++. +.+++. +|.++|...+.+.. . ++++. +..+......+.+-
T Consensus 80 gg~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~ 158 (371)
T COG0484 80 GGF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTD 158 (371)
T ss_pred CCC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCC
Confidence 111 111111 23344333332111 1 11111 22234444555556
Q ss_pred EEEccccccceEeeehh----cccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 187 WTVCHRCKMQYEYLRVY----LNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~y----lN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
-.+|+.|.+.++....- ......|+.|+|.+..++.+|+.|+|.|.+
T Consensus 159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v 209 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRV 209 (371)
T ss_pred CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeE
Confidence 66788887777654432 556677888888888888888888887764
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.1e-22 Score=225.62 Aligned_cols=69 Identities=41% Similarity=0.605 Sum_probs=66.1
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+|||||.||+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 369999999999999999999999999999999999888999999999999999999999999998864
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.2e-22 Score=220.09 Aligned_cols=69 Identities=46% Similarity=0.722 Sum_probs=65.2
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|+.|++||+||+||.+|+.||+++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 369999999999999999999999999999999998 467999999999999999999999999998864
No 5
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=1.7e-21 Score=216.51 Aligned_cols=69 Identities=49% Similarity=0.756 Sum_probs=66.0
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 469999999999999999999999999999999998888999999999999999999999999998864
No 6
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=2.3e-21 Score=215.69 Aligned_cols=69 Identities=45% Similarity=0.681 Sum_probs=66.2
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 369999999999999999999999999999999999889999999999999999999999999998864
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=3.5e-21 Score=213.72 Aligned_cols=69 Identities=46% Similarity=0.733 Sum_probs=65.1
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 369999999999999999999999999999999997 467899999999999999999999999998864
No 8
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.7e-21 Score=212.29 Aligned_cols=68 Identities=50% Similarity=0.764 Sum_probs=65.8
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 69999999999999999999999999999999999889999999999999999999999999998864
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.7e-21 Score=212.61 Aligned_cols=69 Identities=48% Similarity=0.656 Sum_probs=65.8
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 369999999999999999999999999999999998888999999999999999999999999999864
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.2e-21 Score=212.73 Aligned_cols=68 Identities=44% Similarity=0.631 Sum_probs=65.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||+||+|+.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999999888999999999999999999999999998753
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=5.3e-21 Score=213.60 Aligned_cols=68 Identities=54% Similarity=0.747 Sum_probs=64.5
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|++.|+.|++||+|||||+||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 379999999999999999999999999999999997 46789999999999999999999999999875
No 12
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=5.6e-21 Score=206.73 Aligned_cols=69 Identities=49% Similarity=0.731 Sum_probs=64.9
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKA 134 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (806)
...||.||||+++|+.+|||||||+||++||||||+. +.++|+.|++||+|||||+||..||+++..+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 4689999999999999999999999999999999976 99999999999999999999999999996443
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1.1e-20 Score=209.69 Aligned_cols=69 Identities=43% Similarity=0.725 Sum_probs=64.7
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||+||+||.+|..||+++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 3699999999999999999999999999999999974 66889999999999999999999999998864
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=2.9e-20 Score=207.28 Aligned_cols=69 Identities=46% Similarity=0.707 Sum_probs=65.0
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||++|+|+.+|..||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 4699999999999999999999999999999999984 67899999999999999999999999998864
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=2.2e-20 Score=206.96 Aligned_cols=68 Identities=44% Similarity=0.715 Sum_probs=64.4
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||++|+|+.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999974 56889999999999999999999999998864
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=2.9e-20 Score=206.16 Aligned_cols=69 Identities=39% Similarity=0.623 Sum_probs=64.5
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS--IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|++.|+.|++||++|+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 3699999999999999999999999999999999974 56889999999999999999999999998864
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.8e-20 Score=206.60 Aligned_cols=65 Identities=51% Similarity=0.780 Sum_probs=62.1
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhh
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQ 128 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~ 128 (806)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999999974 5789999999999999999999999998
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.8e-20 Score=206.11 Aligned_cols=69 Identities=48% Similarity=0.721 Sum_probs=65.1
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.+++.|+.|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 369999999999999999999999999999999998 467899999999999999999999999999864
No 19
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.9e-20 Score=205.25 Aligned_cols=69 Identities=45% Similarity=0.747 Sum_probs=64.7
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ .+.|+++|++|++||++|+|+.+|..||+++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 369999999999999999999999999999999997 456889999999999999999999999998864
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.7e-20 Score=207.15 Aligned_cols=68 Identities=46% Similarity=0.744 Sum_probs=64.6
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||++|+||.+|+.||+++..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 699999999999999999999999999999999974 57899999999999999999999999998864
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=5.5e-20 Score=204.59 Aligned_cols=69 Identities=46% Similarity=0.731 Sum_probs=66.1
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|++.|+.|++||++|+|+.+|..||+++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 579999999999999999999999999999999998888999999999999999999999999998754
No 22
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=7.2e-20 Score=204.50 Aligned_cols=69 Identities=49% Similarity=0.718 Sum_probs=64.8
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
.|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||++|+|+.+|+.||+++...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 499999999999999999999999999999999984 678999999999999999999999999988643
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.1e-19 Score=202.58 Aligned_cols=70 Identities=46% Similarity=0.672 Sum_probs=66.5
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|+.|++||++|+||.+|+.||+++...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 3699999999999999999999999999999999998889999999999999999999999999988643
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.81 E-value=7.8e-20 Score=201.64 Aligned_cols=68 Identities=50% Similarity=0.762 Sum_probs=64.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 66 D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
|||+||||+++|+.++||+|||+||++||||+++.+.++++|+.|++||++|+|+.+|..||+++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 89999999999999999999999999999999987789999999999999999999999999987643
No 25
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.81 E-value=2.4e-20 Score=209.63 Aligned_cols=149 Identities=22% Similarity=0.257 Sum_probs=99.4
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCCC
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTASG 143 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (806)
..|||+||||+++|+.++||+|||+||++||||+|+ ..++|++|++||+||+||.||+.||+.+..... .. +
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~----~~-~ 98 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE----GG-E 98 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcchhcc----cC-C
Confidence 579999999999999999999999999999999985 368999999999999999999999998864321 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceee--e
Q 003641 144 GTSTATAANGFYNFTKPSAKASKSTPRSGHSSTPSHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV--E 221 (806)
Q Consensus 144 ~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~--e 221 (806)
+ ......-|..||.. ... +.......+.......+|..++.+|.....+.+. ..|+.|.|++.+. .
T Consensus 99 ~--~~d~~d~f~~~Fgg----g~~-~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~ 166 (421)
T PTZ00037 99 Q--PADASDLFDLIFGG----GRK-PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKD-----VICANCEGHGGPKDAF 166 (421)
T ss_pred C--CcchhhhHHHhhcc----ccc-cccccCCCCEEEEeeeeHHHHhCCCceEEEeecc-----ccccccCCCCCCCCCC
Confidence 0 00011112222221 110 0001111133333456777777888777776554 7788888877532 2
Q ss_pred cCCCCCCCCCC
Q 003641 222 TAPPPSNSSKT 232 (806)
Q Consensus 222 ~~~p~c~g~gs 232 (806)
..|+.|+|.|.
T Consensus 167 ~~C~~C~G~G~ 177 (421)
T PTZ00037 167 VDCKLCNGQGI 177 (421)
T ss_pred ccCCCCCCCCe
Confidence 34566777774
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.2e-19 Score=201.64 Aligned_cols=68 Identities=40% Similarity=0.620 Sum_probs=65.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+++.+.++++|++|++||++|+|+.+|..||+++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 69999999999999999999999999999999998778999999999999999999999999998764
No 27
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=194.71 Aligned_cols=72 Identities=43% Similarity=0.646 Sum_probs=67.8
Q ss_pred CCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
...+|||+||||+++|+..+||+|||||||+||||||++ |.|.+.|+.|+.||+|||||.+|+.||..+...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 456899999999999999999999999999999999994 889999999999999999999999999999543
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=5.3e-19 Score=196.54 Aligned_cols=68 Identities=47% Similarity=0.747 Sum_probs=65.5
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+||.+|+.||+.+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 69999999999999999999999999999999999888999999999999999999999999998764
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.2e-19 Score=200.90 Aligned_cols=164 Identities=27% Similarity=0.371 Sum_probs=107.4
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCCC
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTASG 143 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~ 143 (806)
.|||+||||+++|+.++||+|||+||++||||+++. +.|++.|++|++||++|+|+.+|..||+++............+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 699999999999999999999999999999999974 5688999999999999999999999999886433111000000
Q ss_pred CCCCCCC--CCCCC----CCCCCCC--------------CCCCCCCC--CCCCCCCCCCCCCCceEEEccccccceEeee
Q 003641 144 GTSTATA--ANGFY----NFTKPSA--------------KASKSTPR--SGHSSTPSHKLKPNTFWTVCHRCKMQYEYLR 201 (806)
Q Consensus 144 ~~~~~~~--~~g~~----~f~~~~~--------------~~~~~~~~--~~~~~~~~~~~~~~TFwT~C~~Ck~~yeY~r 201 (806)
++...++ .+.++ .||.... ........ .+....+.......+|..++.+|.....|.+
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 0000000 00011 1221100 00000000 0001113333445678888899998888866
Q ss_pred hhcccccCCCCCCCCceeee--cCCCCCCCCCCC
Q 003641 202 VYLNHNLLCPNCHEPFLAVE--TAPPPSNSSKTP 233 (806)
Q Consensus 202 ~ylN~~l~C~~C~g~F~A~e--~~~p~c~g~gs~ 233 (806)
. ..|+.|.|++.+.. ..|+.|+|.|..
T Consensus 163 ~-----~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 191 (397)
T PRK14281 163 Q-----VPCKECNGTGSKTGATETCPTCHGSGEV 191 (397)
T ss_pred e-----ecCCCCCCcccCCCCCccCCCCCCCcEE
Confidence 6 78999999887643 346788888754
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=6.5e-19 Score=196.55 Aligned_cols=69 Identities=43% Similarity=0.664 Sum_probs=64.9
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|+.|++||++|+||.+|+.||+++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999974 57999999999999999999999999998764
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.7e-19 Score=197.55 Aligned_cols=161 Identities=25% Similarity=0.343 Sum_probs=106.8
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCCCC
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTASGG 144 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (806)
.|||+||||+++|+.++||+|||+||+++|||+++.+.|+++|+.|++||++|+||.+|+.||+++.....+ ..+++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~---~~~~~ 78 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAG---MPGGD 78 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccc---ccCCc
Confidence 599999999999999999999999999999999998889999999999999999999999999988642110 00000
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee
Q 003641 145 TSTATAA---NGFYNFTKPSAKASKSTPRSGHSSTPSHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE 221 (806)
Q Consensus 145 ~~~~~~~---~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e 221 (806)
+....+. .-|..|+..................+.......+|..+..+|.....+.+. ..|+.|.|++....
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~-----~~C~~C~G~G~~~~ 153 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRL-----TECEHCHGSRTEPG 153 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEee-----ecCCCCcccccCCC
Confidence 0000000 011112221100000000111111123333446777788888888877665 78999999987543
Q ss_pred ----cCCCCCCCCCCC
Q 003641 222 ----TAPPPSNSSKTP 233 (806)
Q Consensus 222 ----~~~p~c~g~gs~ 233 (806)
..|+.|+|+|..
T Consensus 154 ~~~~~~C~~C~G~G~~ 169 (371)
T PRK14292 154 GKPPKTCPTCRGAGAV 169 (371)
T ss_pred CCCCccCCCCCCccEE
Confidence 456778888754
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=2.6e-18 Score=183.99 Aligned_cols=127 Identities=26% Similarity=0.320 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHH
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVK 83 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIK 83 (806)
..+++.-.+++||++|...+|+.|...+.+|++++++...+..-|.....+ .+..+.+|||+||||.++|+..+|-
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl----kkqs~kRDYYKILGVkRnAsKqEI~ 412 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRL----KKQSGKRDYYKILGVKRNASKQEIT 412 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----HHHhccchHHHHhhhcccccHHHHH
Confidence 357788999999999999999999999999999999998888777766654 3567899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhhhhhHHHHHhhhccccc
Q 003641 84 KQYRKLALMLHPDKNKSI----GADGAFKFVSEAWILLSDKAKRAEYDQRRNGKA 134 (806)
Q Consensus 84 kaYRkLal~~HPDkn~~~----~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (806)
|||||||++||||...+. .|+.+|..|..|-+||+||++|+.||..-.+-.
T Consensus 413 KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD 467 (504)
T KOG0624|consen 413 KAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLD 467 (504)
T ss_pred HHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCC
Confidence 999999999999988764 589999999999999999999999999876543
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8e-19 Score=194.53 Aligned_cols=162 Identities=24% Similarity=0.299 Sum_probs=103.4
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCC
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSI--GADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTAS 142 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~--~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (806)
.|||+||||+++|+.++||+|||+||++||||+++.. .|++.|+.|++||++|+|+.+|..||+++.... .. .+.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~-~~-~~~~ 80 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF-GA-GGSN 80 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc-cc-CCCC
Confidence 6999999999999999999999999999999999753 689999999999999999999999999886432 10 0000
Q ss_pred CCCCCCCCCCC----CCCCCCCCCCC----CCCCCCCCCC-CCCCCCCCCCceEEEccccccceEeeehhcccccCCCCC
Q 003641 143 GGTSTATAANG----FYNFTKPSAKA----SKSTPRSGHS-STPSHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNC 213 (806)
Q Consensus 143 ~~~~~~~~~~g----~~~f~~~~~~~----~~~~~~~~~~-~~~~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C 213 (806)
.+......... |..|+...+.. ........+. ..+.......+|..++.+|.....+.+. ..|+.|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~-----~~C~~C 155 (365)
T PRK14290 81 FNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRN-----AMCPDC 155 (365)
T ss_pred ccccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeec-----ccCCCC
Confidence 00000000001 11122211000 0000000000 1133333446777778888877776555 788889
Q ss_pred CCCceeee--cCCCCCCCCCCC
Q 003641 214 HEPFLAVE--TAPPPSNSSKTP 233 (806)
Q Consensus 214 ~g~F~A~e--~~~p~c~g~gs~ 233 (806)
.|.+.+.. ..||.|+|.|..
T Consensus 156 ~G~g~~~~~~~~C~~C~G~G~~ 177 (365)
T PRK14290 156 SGTGAKNGKLITCPTCHGTGQQ 177 (365)
T ss_pred ccccCCCCCCccCCCCCCcCEE
Confidence 88876543 346778887754
No 34
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=3.9e-17 Score=175.98 Aligned_cols=69 Identities=45% Similarity=0.681 Sum_probs=66.0
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|+.|++||++|+|+.+|..||+.+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 369999999999999999999999999999999998888999999999999999999999999998864
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-16 Score=169.65 Aligned_cols=139 Identities=27% Similarity=0.325 Sum_probs=98.1
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccccccCCCCCCCC
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKAFQKVSTASGG 144 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~~~ 144 (806)
.|||+||||+++|+..|||+||++||++||||.|+..+|.+.|+.|.+||++|+|++||..||+.+.... +
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~---------~ 113 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH---------G 113 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc---------c
Confidence 4999999999999999999999999999999999999999999999999999999999999999997530 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeeecCC
Q 003641 145 TSTATAANGFYNFTKPSAKASKSTPRSGHSSTPSHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAP 224 (806)
Q Consensus 145 ~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~ 224 (806)
+.......-|..++.. . .................|..+-.+|+....+... -.|..|.+.+....+..
T Consensus 114 ~~~g~~~~~~~~~~~~----~---~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~-----~~~~t~~~~~~~~~~~~ 181 (288)
T KOG0715|consen 114 EFGGNPFDVFLEFFGG----K---MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVL-----SDCETCFGSGAEEGAKR 181 (288)
T ss_pred cccCCccchHHHhhcc----c---ccccccCcccccccccCHHHHhhccccceEEEee-----cccccccCcCccccccc
Confidence 0000011111111111 0 0000000122223456777788888777777655 58999999985554444
No 36
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.62 E-value=5e-16 Score=168.52 Aligned_cols=67 Identities=49% Similarity=0.798 Sum_probs=64.6
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
.|||+||||++.|+.++||+|||+||++||||+++.+.++++|+.|++||++|+|+.+|..||+.+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999888899999999999999999999999999764
No 37
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=1.6e-15 Score=127.20 Aligned_cols=62 Identities=45% Similarity=0.750 Sum_probs=59.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhhhhhHHHHHh
Q 003641 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG--ADGAFKFVSEAWILLSDKAKRAEYD 127 (806)
Q Consensus 66 D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--A~~aFk~I~eAy~vLsD~~kR~~YD 127 (806)
|||+||||+++++.++||++|++|++.+|||++.... ++..|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988766 8999999999999999999999998
No 38
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.1e-15 Score=156.50 Aligned_cols=71 Identities=41% Similarity=0.610 Sum_probs=66.8
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKA 134 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (806)
..|+|.||||+++|+.++|||+||+|+++||||++++ |.+..+|++|++||.+|+||.+|..||..+....
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 5789999999999999999999999999999999987 8899999999999999999999999999976433
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.3e-15 Score=164.96 Aligned_cols=70 Identities=44% Similarity=0.707 Sum_probs=65.2
Q ss_pred CCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS--IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 63 ~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..++||+||||.+.|++.+||++||+|||+||||||+. ..|.+.|++|+.||+|||||..|+.||..+..
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 35799999999999999999999999999999999986 46889999999999999999999999998863
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5e-15 Score=159.13 Aligned_cols=70 Identities=44% Similarity=0.714 Sum_probs=66.8
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK-SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~-~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
..|||.||||+.+|+..+|+||||++||+||||||+ +|.|.+.|+.|.+||+||+|+.+|..||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 679999999999999999999999999999999998 5889999999999999999999999999999753
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.7e-14 Score=158.16 Aligned_cols=118 Identities=33% Similarity=0.484 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHHHH
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLA 90 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLa 90 (806)
.+..|+-++..++|.+|.+.+.+|.++.-+ -.+.++|....+.+ +.+...|||.||||.+.|++.+|||+||++|
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL----kkSkRkd~ykilGi~~~as~~eikkayrk~A 398 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL----KKSKRKDWYKILGISRNASDDEIKKAYRKLA 398 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH----HHhhhhhHHHHhhhhhhcccchhhhHHHHHH
Confidence 456788899999999999999999999988 56888888877754 5577899999999999999999999999999
Q ss_pred HHhCCCCCCC--cchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 91 LMLHPDKNKS--IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 91 l~~HPDkn~~--~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
|.+|||++.. ..++..|+.|.+||.+|+||.+|..||..-...
T Consensus 399 L~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 399 LVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred HHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 9999999874 578999999999999999999999999876543
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.51 E-value=1.5e-14 Score=171.38 Aligned_cols=71 Identities=30% Similarity=0.368 Sum_probs=67.0
Q ss_pred CCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
-...|||+||||+++|+..+||+|||+||++||||+++...|...|+.|++||+|||||.+|+.||+.|..
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 35789999999999999999999999999999999998778889999999999999999999999998864
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-14 Score=159.00 Aligned_cols=70 Identities=37% Similarity=0.628 Sum_probs=65.3
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSI----GADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~----~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
+.|||.+|+|+++|+.++||+|||+++++|||||..+| .|++.|.+|.+||+|||||++|+.||..+..+
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 46999999999999999999999999999999999864 58999999999999999999999999998643
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.3e-14 Score=144.34 Aligned_cols=72 Identities=42% Similarity=0.656 Sum_probs=66.2
Q ss_pred CCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhhhhhHHHHHhhhcccc
Q 003641 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK---SIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK 133 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~---~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (806)
....|+|.||||.++|++.+||+|||+|||++|||+++ ...|...|+.|+.||.||+|.++|+.||..+...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 45679999999999999999999999999999999995 2568899999999999999999999999998653
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.45 E-value=8.9e-14 Score=114.75 Aligned_cols=57 Identities=49% Similarity=0.731 Sum_probs=53.9
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHHHhhhhh
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNK--SIGADGAFKFVSEAWILLSDKA 121 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~--~~~A~~aFk~I~eAy~vLsD~~ 121 (806)
.|||+||||+++++.++||++||+|++.+|||++. .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999998 5678999999999999999985
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.42 E-value=2.4e-13 Score=110.17 Aligned_cols=54 Identities=57% Similarity=0.891 Sum_probs=51.7
Q ss_pred CcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhh
Q 003641 66 DWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSD 119 (806)
Q Consensus 66 D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD 119 (806)
|||+||||+++++.++||++||+|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999987 6789999999999999986
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.6e-13 Score=135.85 Aligned_cols=73 Identities=33% Similarity=0.601 Sum_probs=68.0
Q ss_pred CCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHHHhhhhhHHHHHhhhccccc
Q 003641 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS-IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKA 134 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~-~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (806)
....|+|+||||+++|++.|||||||+|++++||||++. .+.++.|..|++||..|+|+..|..|..++++.+
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 356899999999999999999999999999999999988 5677889999999999999999999999998765
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.7e-13 Score=133.66 Aligned_cols=67 Identities=51% Similarity=0.759 Sum_probs=63.4
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG--ADGAFKFVSEAWILLSDKAKRAEYDQRR 130 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--A~~aFk~I~eAy~vLsD~~kR~~YD~~~ 130 (806)
..|||.||||+++|+..+||++||+||+++|||+++... +++.|+.|++||.+|+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 479999999999999999999999999999999998654 8999999999999999999999999974
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.36 E-value=7.3e-13 Score=154.45 Aligned_cols=68 Identities=41% Similarity=0.663 Sum_probs=65.1
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
.|||+||||+++|+.++||++||+|++++|||++..+.+..+|+.|++||++|+|+.+|..||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 69999999999999999999999999999999998888889999999999999999999999998764
No 50
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.7e-13 Score=146.61 Aligned_cols=70 Identities=39% Similarity=0.582 Sum_probs=67.4
Q ss_pred CCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 63 ~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..+|.|.||||++++++++|||.|||||.+.|||||..+.|+++|+.|.-||++|+|+.+|..||..+..
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999988754
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.31 E-value=2e-12 Score=127.24 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=60.7
Q ss_pred CCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 65 ADWYGILGVTPQA--DDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 65 ~D~Y~ILGV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
..+|+||||+++| +.++||+|||+||+++|||++ +.++.|+.|++||++|+|+.+|..||..+..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 3579999999999 999999999999999999997 5678999999999999999999999998854
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=2.8e-11 Score=121.54 Aligned_cols=67 Identities=25% Similarity=0.434 Sum_probs=59.5
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 65 ADWYGILGVTPQ--ADDETVKKQYRKLALMLHPDKNKSIG------ADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 65 ~D~Y~ILGV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
.|||+||||++. ++..+|+++||+|++++|||+..... +...|..|++||++|+||.+|..|+....
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 68899999999999999999976432 45689999999999999999999998765
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.17 E-value=3.8e-11 Score=120.11 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=59.0
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 65 ADWYGILGVTPQ--ADDETVKKQYRKLALMLHPDKNKSIG----ADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 65 ~D~Y~ILGV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~----A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
.|||+||||++. ++..+|+++||+|++++|||++.... +...|..|++||.+|+||.+|+.|+..++
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 599999999997 78999999999999999999986421 23457899999999999999999998875
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.2e-11 Score=123.70 Aligned_cols=70 Identities=31% Similarity=0.578 Sum_probs=66.7
Q ss_pred CCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 62 GGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
-|..|.|+||||.+.|+..+|.+|||+||+++|||+++.+.+...|+.|..||++|.|.+.|..||-...
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 3667999999999999999999999999999999999999999999999999999999999999998774
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=1.3e-10 Score=117.03 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=61.6
Q ss_pred CCCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 63 GEADWYGILGVTPQ--ADDETVKKQYRKLALMLHPDKNKSIG------ADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 63 ~~~D~Y~ILGV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
+..|||++|||++. .+..+|+++||+|++++|||++.... +...|..|++||.+|+||.+|..|+....
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46899999999997 66899999999999999999986422 45679999999999999999999998875
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.4e-11 Score=125.39 Aligned_cols=68 Identities=50% Similarity=0.730 Sum_probs=64.0
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSI--GADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~--~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
..|||.||+|.+.|+..+|++|||+||+.+|||+|+.+ .++.+|++|.+||++|+|+.+|..||+.+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999999877 666789999999999999999999999997
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.09 E-value=1.7e-10 Score=116.36 Aligned_cols=69 Identities=25% Similarity=0.382 Sum_probs=59.6
Q ss_pred CCCCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cchH-----HHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 63 GEADWYGILGVTPQ--ADDETVKKQYRKLALMLHPDKNKS-IGAD-----GAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 63 ~~~D~Y~ILGV~~~--A~~~eIKkaYRkLal~~HPDkn~~-~~A~-----~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
...|||+||||++. ++..+|+++||+|++++|||++.. +.++ ..+..|++||.+|+||.+|..|+..+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 34799999999996 689999999999999999999864 3333 346899999999999999999998775
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.98 E-value=5.4e-10 Score=105.32 Aligned_cols=52 Identities=33% Similarity=0.467 Sum_probs=48.7
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhh
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLS 118 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLs 118 (806)
..++|+||||+++|+.++||++||+|++++|||++ +....|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999985 67889999999999995
No 59
>PHA02624 large T antigen; Provisional
Probab=98.90 E-value=4.1e-09 Score=122.47 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=56.7
Q ss_pred CCcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHH
Q 003641 65 ADWYGILGVTPQA--DDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEY 126 (806)
Q Consensus 65 ~D~Y~ILGV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~Y 126 (806)
.++|+||||+++| +.++||+|||+||+++|||++ ++++.|+.|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 5899999999999 999999999999999999997 6789999999999999999999998
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.87 E-value=2e-09 Score=115.37 Aligned_cols=55 Identities=35% Similarity=0.497 Sum_probs=50.4
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHHHhhh
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS--------IGADGAFKFVSEAWILLSD 119 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~--------~~A~~aFk~I~eAy~vLsD 119 (806)
.|+|+||||+++||.++||++||+|++++|||++.. +.+++.|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999743 2477899999999999975
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.8e-09 Score=105.97 Aligned_cols=64 Identities=36% Similarity=0.623 Sum_probs=58.9
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHHHhhhhhHHHHHh
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS--IGADGAFKFVSEAWILLSDKAKRAEYD 127 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~--~~A~~aFk~I~eAy~vLsD~~kR~~YD 127 (806)
..++|+||+|.|..+.++||+.||+|+++.|||||++ +.|..||-.|..||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5799999999999999999999999999999999996 679999999999999999998665444
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.76 E-value=7.3e-09 Score=114.81 Aligned_cols=72 Identities=31% Similarity=0.533 Sum_probs=66.0
Q ss_pred CCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhhhhhHHHHHhhhccccc
Q 003641 63 GEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKS------IGADGAFKFVSEAWILLSDKAKRAEYDQRRNGKA 134 (806)
Q Consensus 63 ~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~------~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (806)
...|+|+|||++.+++..+||++||+|+.++||||.+. ..-++.++.|++||+.|+|...|..|-.+|.+..
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 46899999999999999999999999999999999764 3568899999999999999999999999987654
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.2e-08 Score=103.07 Aligned_cols=79 Identities=29% Similarity=0.450 Sum_probs=67.2
Q ss_pred HHHHHhhhhCCCCCcchhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHHHhhhhhHHHHH
Q 003641 53 VYISAENKIGGEADWYGILGVTP---QADDETVKKQYRKLALMLHPDKNK---SIGADGAFKFVSEAWILLSDKAKRAEY 126 (806)
Q Consensus 53 v~~aa~~k~~~~~D~Y~ILGV~~---~A~~~eIKkaYRkLal~~HPDkn~---~~~A~~aFk~I~eAy~vLsD~~kR~~Y 126 (806)
.|+..+.+--+..|+|.+|||+. .|++.+|.++.++..++||||+.. +.+..+.|++|+.||++|+|+.+|..|
T Consensus 31 ~~~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy 110 (379)
T COG5269 31 LYTREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY 110 (379)
T ss_pred HHHhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence 33333444456789999999997 589999999999999999999973 357899999999999999999999999
Q ss_pred hhhcc
Q 003641 127 DQRRN 131 (806)
Q Consensus 127 D~~~~ 131 (806)
|..--
T Consensus 111 DS~df 115 (379)
T COG5269 111 DSNDF 115 (379)
T ss_pred ccccc
Confidence 98754
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.61 E-value=8e-08 Score=96.95 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=59.5
Q ss_pred CCcchhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 65 ADWYGILGVTPQ--ADDETVKKQYRKLALMLHPDKNKSIG------ADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 65 ~D~Y~ILGV~~~--A~~~eIKkaYRkLal~~HPDkn~~~~------A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
.|||++|||++. .+...++++||+|.+.+|||+....+ +.+.-..||+||.+|.||.+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999997 89999999999999999999976543 34567899999999999999999998875
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.53 E-value=1.5e-07 Score=93.62 Aligned_cols=55 Identities=29% Similarity=0.323 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 77 ADDETVKKQYRKLALMLHPDKNKSIG------ADGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 77 A~~~eIKkaYRkLal~~HPDkn~~~~------A~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
.+..+|+++||+|++++|||+..... +...|..|++||.+|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47789999999999999999965432 56789999999999999999999999986
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=4.4e-05 Score=79.16 Aligned_cols=56 Identities=30% Similarity=0.539 Sum_probs=52.2
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHH-Hhhhh
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWI-LLSDK 120 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~-vLsD~ 120 (806)
+.+|.||||..+|+..+++.+|.+|++++|||........+.|..|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999988888899999999998 88754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00011 Score=88.41 Aligned_cols=54 Identities=35% Similarity=0.424 Sum_probs=47.0
Q ss_pred CCCcchhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhh
Q 003641 64 EADWYGILGVTPQ----ADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSD 119 (806)
Q Consensus 64 ~~D~Y~ILGV~~~----A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD 119 (806)
.-+-|+||.|+-+ -+.+.||+||+|||.+||||||+ ...+.|..|++||+.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence 3467999999874 34589999999999999999995 778999999999999983
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0011 Score=61.74 Aligned_cols=49 Identities=35% Similarity=0.455 Sum_probs=42.6
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhh
Q 003641 69 GILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDK 120 (806)
Q Consensus 69 ~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~ 120 (806)
-||||.++++.+.||.++|++-+..|||+.. ..-.=..|+||+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GG---SPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGG---SPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCC---CHHHHHHHHHHHHHHhcc
Confidence 3999999999999999999999999999984 444556799999999743
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.99 E-value=0.0093 Score=68.91 Aligned_cols=69 Identities=33% Similarity=0.518 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHH
Q 003641 42 EGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIG--------ADGAFKFVSEA 113 (806)
Q Consensus 42 e~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~--------A~~aFk~I~eA 113 (806)
.+|..||+.++..|=.+ -. +.=+++..-.+.+.|||+|||..|.+||||.+..| |+..|-++.+|
T Consensus 372 ~NIRALLSTLh~VLW~e------s~-WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~ea 444 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWPE------SG-WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEA 444 (453)
T ss_pred ccHHHHHHHHhHhhcCc------cC-cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHH
Confidence 46778888887654221 12 23345666679999999999999999999987654 56667777777
Q ss_pred HHHh
Q 003641 114 WILL 117 (806)
Q Consensus 114 y~vL 117 (806)
|...
T Consensus 445 wn~f 448 (453)
T KOG0431|consen 445 WNKF 448 (453)
T ss_pred HHhh
Confidence 7643
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.069 Score=54.15 Aligned_cols=52 Identities=35% Similarity=0.465 Sum_probs=45.7
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHHH
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSI--------GADGAFKFVSEAWIL 116 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~--------~A~~aFk~I~eAy~v 116 (806)
.|+|.+||+...++..+|+++||++.-..|||+-... .+.+.++.|++||..
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999996432 367778888888864
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.043 Score=54.66 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=56.9
Q ss_pred CCCCCcchhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHHHhhhhhHHHHHhhhccc
Q 003641 62 GGEADWYGILGVTP--QADDETVKKQYRKLALMLHPDKNKS------IGADGAFKFVSEAWILLSDKAKRAEYDQRRNG 132 (806)
Q Consensus 62 ~~~~D~Y~ILGV~~--~A~~~eIKkaYRkLal~~HPDkn~~------~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~~~ 132 (806)
+...+||.++|... ..++.-++--|.-...++|||+... .-|.+....|++||.+|.||-+|+.|=.....
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 44578999997665 4566667768999999999999432 23567789999999999999999999988753
No 72
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=91.52 E-value=0.24 Score=42.40 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCceEEEccccccceEeee------hhcccccCCCCCCCCceee-ecCCCCCCCCC
Q 003641 183 PNTFWTVCHRCKMQYEYLR------VYLNHNLLCPNCHEPFLAV-ETAPPPSNSSK 231 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r------~ylN~~l~C~~C~g~F~A~-e~~~p~c~g~g 231 (806)
+......|+.|++.+.... .++.....|+.|+|.+..+ ..+++.|.|.|
T Consensus 11 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 11 PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 4456679999998887755 3456678999999999998 88889998864
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=0.21 Score=50.68 Aligned_cols=66 Identities=29% Similarity=0.318 Sum_probs=51.7
Q ss_pred CcchhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcch------HHHHHHHHHHHHHhhhhhHHHHHhhhcc
Q 003641 66 DWYGILGVTPQA--DDETVKKQYRKLALMLHPDKNKSIGA------DGAFKFVSEAWILLSDKAKRAEYDQRRN 131 (806)
Q Consensus 66 D~Y~ILGV~~~A--~~~eIKkaYRkLal~~HPDkn~~~~A------~~aFk~I~eAy~vLsD~~kR~~YD~~~~ 131 (806)
||...+|+.+.+ +.+.++.+|+.+.+.+|||+....+. -..+..++.||.+|.||-+|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 445555555544 45678999999999999999875443 2468889999999999999999987765
No 74
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=89.02 E-value=0.28 Score=37.28 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=27.0
Q ss_pred EEccccccceEeeehhccc---ccCCCCCCCCceee
Q 003641 188 TVCHRCKMQYEYLRVYLNH---NLLCPNCHEPFLAV 220 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~---~l~C~~C~g~F~A~ 220 (806)
..|++|...|......+.. .++|++|+..|.++
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 5799999999998765543 48999999998763
No 75
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.78 E-value=1.1 Score=32.03 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 8 ATRAKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 8 A~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
|.-+..+|...+..|+|..|++.+.+|.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 345677899999999999999999999999996
No 76
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=87.06 E-value=1.6 Score=42.52 Aligned_cols=53 Identities=26% Similarity=0.235 Sum_probs=40.8
Q ss_pred chhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHH
Q 003641 68 YGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKR 123 (806)
Q Consensus 68 Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR 123 (806)
..||+|++..+.++|.+.|.+|-..-+|++. |..-.=..|..|.+.|....+.
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~ 113 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKE 113 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999987 7777778899999988765543
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=86.27 E-value=3.4 Score=46.57 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHH
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVK 83 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIK 83 (806)
+..|+.+-+|+..+.|..++|..|+..+.+|.+++|.. --.+....-|++|......+-.|+-.||.+.|+..-+-|-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 67899999999999999999999999999999999984 4445566678888776666778999999999976655544
Q ss_pred HHH--------------HHHHHHhCCCCCCCcchHHHHHHHHHHHHH
Q 003641 84 KQY--------------RKLALMLHPDKNKSIGADGAFKFVSEAWIL 116 (806)
Q Consensus 84 kaY--------------RkLal~~HPDkn~~~~A~~aFk~I~eAy~v 116 (806)
+.. -+.+++..|..+....+.....+|.+-|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 322 223455555554445566666666665543
No 78
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=85.34 E-value=1.4 Score=46.54 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=43.6
Q ss_pred CCCCeEEEecC---------CCCCCcceeEEEEEee--cCCceEEEEecccCCCCCCCCcceeeCCceeeeeeeEeccee
Q 003641 514 GDNQVWAAYDD---------DDGMPRYYAMIHGVIS--LNPFKMRISWLNSRTNSELGPLNWVASGFSKTCGDFRVGRYE 582 (806)
Q Consensus 514 ~~gQIWA~Yd~---------~DgmPR~Ya~I~kV~s--~~pFkl~iswLe~~~~~e~~~~~W~~~~lpv~CG~F~~~~~~ 582 (806)
+.|.|||||-+ .|-.+.-|..+. |++ ...--+.|..|.-..-.. ....+...+- .+.|.|-+.
T Consensus 124 rkGEvWAlYknW~~~w~~~~~~~~~~~YdiVE-Vl~d~~~~~gi~V~~L~Kv~Gf~-svF~~~~~~~---~~~~~Ip~~- 197 (217)
T PF11926_consen 124 RKGEVWALYKNWSPDWSSSTDDERKYEYDIVE-VLSDYSEEAGIKVAPLVKVKGFK-SVFKRAEEGG---EAVFTIPKS- 197 (217)
T ss_pred CcccEeEEecCCCCCCCcCcCcCcccceEEEE-EeecCCccCcEEEEEEEEecCcE-eeeeecCCCC---cceEEEChH-
Confidence 67999999964 245566676664 554 333577888886532211 1112211111 345555544
Q ss_pred EeccCCceEEEEEeee
Q 003641 583 VSNSLNSFSHKVRWSK 598 (806)
Q Consensus 583 ~~~~~~~FSH~v~~~~ 598 (806)
.+..|||+|-..+
T Consensus 198 ---E~~RFSHqIPa~r 210 (217)
T PF11926_consen 198 ---ELLRFSHQIPAFR 210 (217)
T ss_pred ---HcCeeeccCCCEE
Confidence 3689999997543
No 79
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=84.29 E-value=0.76 Score=52.05 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=34.1
Q ss_pred CCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeeecC---CCCCCCCCCC
Q 003641 179 HKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETA---PPPSNSSKTP 233 (806)
Q Consensus 179 ~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~---~p~c~g~gs~ 233 (806)
......||..+-.+|.....|.+. ..|..|+|+|....+. ||+|+|+|.+
T Consensus 119 ~~~l~isleEa~~G~~~~i~~~~~-----~~C~~C~GsGak~gt~~~tC~tC~G~G~v 171 (371)
T COG0484 119 RYNLEITLEEAVFGVKKEIRVTRS-----VTCSTCHGSGAKPGTDPKTCPTCNGSGQV 171 (371)
T ss_pred EEEEEeEhhhhccCceeeEeccee-----eECCcCCCCCCCCCCCCCcCCCCCCcCeE
Confidence 334456777777777777777665 6788888887766543 4667777765
No 80
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.16 E-value=2.6 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 8 ATRAKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 8 A~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
|.-+..+|...+..++++.|...+.+|.+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 455678999999999999999999999999996
No 81
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.09 E-value=2.1 Score=33.26 Aligned_cols=39 Identities=13% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHH
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIA 49 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La 49 (806)
+..+|..++..|+++.|.+.+.++.+++|+...+-..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 456899999999999999999999999999865554443
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.24 E-value=1.9 Score=35.79 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 7 EATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 7 EA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
.|.-+..+|..++..+||+.|...+.+|.+++|+...+-..++.+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM 48 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57788999999999999999999999999999997665555555544
No 83
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=82.18 E-value=0.85 Score=34.98 Aligned_cols=32 Identities=19% Similarity=0.515 Sum_probs=26.0
Q ss_pred EEEccccccceEeeehh---cccccCCCCCCCCce
Q 003641 187 WTVCHRCKMQYEYLRVY---LNHNLLCPNCHEPFL 218 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~y---lN~~l~C~~C~g~F~ 218 (806)
.+.||.|...|.....- -...++|+.|+..|.
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 47899999999987763 355799999998875
No 84
>PF14369 zf-RING_3: zinc-finger
Probab=79.88 E-value=1.8 Score=33.03 Aligned_cols=32 Identities=28% Similarity=0.910 Sum_probs=22.2
Q ss_pred ceEEEccccccceEeeehhcccccCCCCCCCCcee
Q 003641 185 TFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLA 219 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A 219 (806)
+|| |..|......... ......||.|++.|+.
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFVE 33 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEeE
Confidence 577 9999987776433 2223469999998863
No 85
>PRK14281 chaperone protein DnaJ; Provisional
Probab=79.02 E-value=1.8 Score=49.55 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=32.5
Q ss_pred EEEccccccceEeeeh------hcccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 187 WTVCHRCKMQYEYLRV------YLNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~------ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
...|+.|.+.+..... .+.....|+.|.|.+..+..+|+.|.|.+..
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence 4578888877654221 1223457888888888888888888887765
No 86
>PRK14290 chaperone protein DnaJ; Provisional
Probab=78.55 E-value=1.3 Score=50.18 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=32.7
Q ss_pred EEEccccccceEeeehh----c--ccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 187 WTVCHRCKMQYEYLRVY----L--NHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~y----l--N~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
-..|+.|.+.+...... + -....|+.|.|.+.....+|+.|.|.+.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence 45688888777543221 0 11357999999998888888888887764
No 87
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=73.06 E-value=2.3 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.641 Sum_probs=23.6
Q ss_pred EEccccccceEeeehhcc---cccCCCCCCCCce
Q 003641 188 TVCHRCKMQYEYLRVYLN---HNLLCPNCHEPFL 218 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN---~~l~C~~C~g~F~ 218 (806)
..|+.|..+|...-.-+- ..++|++|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 579999999998665433 3588999988763
No 88
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=70.29 E-value=3.5 Score=34.55 Aligned_cols=34 Identities=29% Similarity=0.702 Sum_probs=25.6
Q ss_pred ceEEEccccc----cceEeeehhcccccCCCCCCCCce
Q 003641 185 TFWTVCHRCK----MQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 185 TFwT~C~~Ck----~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+.|..||.|. .+..-.-...|-.|.||.|+...+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 4699999998 333445556788999999987644
No 89
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.17 E-value=13 Score=30.93 Aligned_cols=45 Identities=7% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYIS 56 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~a 56 (806)
.-+|...++.|||..|++++..+.++.|....+.+|...++-.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999999888888887776554
No 90
>PRK14292 chaperone protein DnaJ; Provisional
Probab=69.20 E-value=3.3 Score=46.93 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=32.3
Q ss_pred EEEccccccceEeeeh------hcccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 187 WTVCHRCKMQYEYLRV------YLNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~------ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
.+.|..|.+.+..... ++-....|+.|.|.+.+....|+.|.|.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEE
Confidence 4567777776654311 1223457888888888888888888887754
No 91
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=68.89 E-value=3.4 Score=42.76 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.0
Q ss_pred ccCCCCCCCCceeee--cCCCCCCCCCCC
Q 003641 207 NLLCPNCHEPFLAVE--TAPPPSNSSKTP 233 (806)
Q Consensus 207 ~l~C~~C~g~F~A~e--~~~p~c~g~gs~ 233 (806)
...|+.|+|.|..+. .+|+.|+|+|..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 467888888887776 567888887765
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=67.86 E-value=4.4 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 003641 3 CNKDEATRAKEISEKKFTAR-DFTGAKKFAVKAQNLYP 39 (806)
Q Consensus 3 ~NkdEA~ra~eiAe~~~~~~-D~~gA~r~a~kAq~L~P 39 (806)
.+.+.+.-...+|...+..+ ++..|++++.+|.+++|
T Consensus 32 ~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 32 LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666778888899999 79999999999999998
No 93
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.40 E-value=15 Score=39.00 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEG 43 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~ 43 (806)
++++|.+++.-....|..|||.+|..-|..|..++|.+..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 5678999999999999999999999999999999999853
No 94
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.37 E-value=19 Score=40.03 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEG 43 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~ 43 (806)
++..|++.|.-..++|+++||..|+..+.+|..|.|...-
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV 116 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV 116 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch
Confidence 7889999999999999999999999999999999999743
No 95
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=67.08 E-value=3.6 Score=47.56 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=28.7
Q ss_pred EEccccccceEeeeh------hcccccCCCCCCCCceeee--cCCCCCCCCCCC
Q 003641 188 TVCHRCKMQYEYLRV------YLNHNLLCPNCHEPFLAVE--TAPPPSNSSKTP 233 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~------ylN~~l~C~~C~g~F~A~e--~~~p~c~g~gs~ 233 (806)
..|+.|.+.+..... .......|+.|.|.|..+. .+|+.|.|.|..
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v 220 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVK 220 (421)
T ss_pred ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCccee
Confidence 467888776642111 1123457888888887764 567778777654
No 96
>PRK14285 chaperone protein DnaJ; Provisional
Probab=65.84 E-value=4.6 Score=45.74 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=29.5
Q ss_pred CCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 181 LKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 181 ~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
....||..++.+|.....|.+. ..|+.|+|++.... ..|+.|+|+|..
T Consensus 125 ~l~vtlee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (365)
T PRK14285 125 QIEISLEDAYLGYKNNINITRN-----MLCESCLGKKSEKGTSPSICNMCNGSGRV 175 (365)
T ss_pred EEEEEHHHhhCCeEEEEEeeec-----ccCCCCCCcccCCCCCCccCCCccCceeE
Confidence 3445666777777776666554 66777777765432 235666666643
No 97
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.05 E-value=12 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
.-+..+|.-....||++.|...+.++.++.|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34667899999999999999999999999883
No 98
>PRK14278 chaperone protein DnaJ; Provisional
Probab=64.77 E-value=4.4 Score=46.15 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHhhCCCCC
Q 003641 32 VKAQNLYPGLE 42 (806)
Q Consensus 32 ~kAq~L~P~le 42 (806)
..|+++.|+.-
T Consensus 26 ~la~~~hpD~~ 36 (378)
T PRK14278 26 KLARELHPDVN 36 (378)
T ss_pred HHHHHHCCCCC
Confidence 33566677763
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.80 E-value=9.8 Score=31.16 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 13 EISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 13 eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
..|..++..|+|+.|.+.+.++.+.+|....+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999996656555555544
No 100
>PRK14298 chaperone protein DnaJ; Provisional
Probab=63.67 E-value=3.6 Score=46.86 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=37.7
Q ss_pred CCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 178 SHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 178 ~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
.......+|..+..+|.....|.+. ..|+.|.|++.... ..|+.|+|.|..
T Consensus 117 i~~~l~vslee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 170 (377)
T PRK14298 117 LRYDLYITLEEAAFGVRKDIDVPRA-----ERCSTCSGTGAKPGTSPKRCPTCGGTGQV 170 (377)
T ss_pred EEEEEEEEHHHhhCCeEEEEEEEee-----ccCCCCCCCcccCCCCCCcCCCCCCccEE
Confidence 3344556788888888888887665 78999999887654 457888888765
No 101
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=63.47 E-value=6.5 Score=43.64 Aligned_cols=55 Identities=29% Similarity=0.487 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 003641 76 QADDETVKKQYRKLALMLHPDKNK-----SIGADGAFKFVSEAWILLSDKAKRAEYDQRR 130 (806)
Q Consensus 76 ~A~~~eIKkaYRkLal~~HPDkn~-----~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~ 130 (806)
.++...|+.+|+..++.+||++-. ....++.|+.|.+||.+|.+..+|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 367788999999999999999874 3356788999999999999977766777655
No 102
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.51 E-value=9.1 Score=35.49 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=29.4
Q ss_pred cccccCCCCCCeEEEecCCCCCCcceeEEEEEeecCCce
Q 003641 507 DRTEKSFGDNQVWAAYDDDDGMPRYYAMIHGVISLNPFK 545 (806)
Q Consensus 507 ~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~s~~pFk 545 (806)
|.+|+.|++|+|-.+|-.+|+ ||+|-|. |+++.|..
T Consensus 27 D~SEShf~~g~vlrV~r~Ed~--~~fc~I~-vl~vspvt 62 (106)
T COG3097 27 DKSESHFKPGDVLRVGRFEDD--RYFCTIE-VLAVSPVT 62 (106)
T ss_pred ccchhcCCCCCEEEEEEecCC--cEEEEEE-EEEeccEe
Confidence 469999999999999987776 8999996 55676643
No 103
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=61.65 E-value=7 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=24.9
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceee
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV 220 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~ 220 (806)
..|+.|...+.+..... .+.||.|+..++..
T Consensus 4 y~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 4 YKCARCGREVELDEYGT--GVRCPYCGYRILFK 34 (46)
T ss_pred EECCCCCCEEEECCCCC--ceECCCCCCeEEEc
Confidence 46999999999876643 78999999887753
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=61.65 E-value=73 Score=35.86 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
..++..|..++..++|..|+.++.+|.++.|....+...++.+.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~ 46 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQAN 46 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45778899999999999999999999999999765554444443
No 105
>PRK14284 chaperone protein DnaJ; Provisional
Probab=59.53 E-value=6.3 Score=45.03 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=30.0
Q ss_pred CCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 180 KLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 180 ~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
.....+|..++.+|.....+.+. ..|+.|.|++.... ..|+.|+|.|.+
T Consensus 136 ~~l~vslee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~v 187 (391)
T PRK14284 136 VHITLSFEEAAKGVEKELLVSGY-----KSCDACSGSGANSSQGIKVCDRCKGSGQV 187 (391)
T ss_pred EEEEEEHHHHhCCeeEEEEEeee-----ccCCCCcccccCCCCCCeecCccCCeeEE
Confidence 33445666677777776666554 66777777766542 335666666644
No 106
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.26 E-value=15 Score=25.65 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
...+|...+..||++.|++.+.+..+.||+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 356788889999999999999999999996
No 107
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=59.23 E-value=14 Score=30.72 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=27.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 15 SEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 15 Ae~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
+..++..+||..|.+.+.++..++|....+-...+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~ 40 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF 40 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677888888888888888888886555555554443
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=58.78 E-value=13 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 18 KFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 18 ~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
+|..|||+.|.+++.++...+|....+.-.|+.+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 36 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL 36 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 478899999999999999999987666555555443
No 109
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.60 E-value=59 Score=35.21 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=52.4
Q ss_pred CHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHH
Q 003641 4 NKDEAT-RAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETV 82 (806)
Q Consensus 4 NkdEA~-ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eI 82 (806)
++.+|. --+++|..+|..||+..|+.-+.||.+.+|+.....-+++. +|.-+|....|+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~----------------~Yq~~Ge~~~A~---- 89 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAH----------------YYQKLGENDLAD---- 89 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH----------------HHHHcCChhhHH----
Confidence 345554 34688999999999999999999999999998655444443 244455443333
Q ss_pred HHHHHHHHHHhCCCCCC
Q 003641 83 KKQYRKLALMLHPDKNK 99 (806)
Q Consensus 83 KkaYRkLal~~HPDkn~ 99 (806)
..| +.|+++||+...
T Consensus 90 -e~Y-rkAlsl~p~~Gd 104 (250)
T COG3063 90 -ESY-RKALSLAPNNGD 104 (250)
T ss_pred -HHH-HHHHhcCCCccc
Confidence 334 458899999753
No 110
>PRK14300 chaperone protein DnaJ; Provisional
Probab=57.85 E-value=6.8 Score=44.49 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=10.5
Q ss_pred CCCCCCCCceeeecCCCCCCCCC
Q 003641 209 LCPNCHEPFLAVETAPPPSNSSK 231 (806)
Q Consensus 209 ~C~~C~g~F~A~e~~~p~c~g~g 231 (806)
.|+.|.|.+..+..+|+.|.|.|
T Consensus 186 ~C~~C~G~G~~~~~~C~~C~G~g 208 (372)
T PRK14300 186 ACHKCQGNGQIIKNPCKKCHGMG 208 (372)
T ss_pred eCCCCCccceEeCCCCCCCCCce
Confidence 44444444444444444444443
No 111
>PRK14294 chaperone protein DnaJ; Provisional
Probab=57.82 E-value=7.4 Score=44.07 Aligned_cols=45 Identities=13% Similarity=0.312 Sum_probs=22.0
Q ss_pred EEccccccceEeeeh--hcccccCCCCCCCCceeeecCCCCCCCCCC
Q 003641 188 TVCHRCKMQYEYLRV--YLNHNLLCPNCHEPFLAVETAPPPSNSSKT 232 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~--ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs 232 (806)
+.|+.|.+.+..... ++.....|+.|.|.+..+..+|+.|.|.|.
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~ 208 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGR 208 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceE
Confidence 445555544433211 111234566666666666555666655544
No 112
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.70 E-value=12 Score=37.04 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHh
Q 003641 8 ATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAE 58 (806)
Q Consensus 8 A~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~ 58 (806)
+.+.++.|++.+..||+.-|..++..+...+|....+.++.+.+-..++..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 356778899999999999999999999999999988888888766655544
No 113
>PRK10767 chaperone protein DnaJ; Provisional
Probab=57.56 E-value=7.1 Score=44.26 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=4.8
Q ss_pred HHhhCCCC
Q 003641 34 AQNLYPGL 41 (806)
Q Consensus 34 Aq~L~P~l 41 (806)
|+++.|+.
T Consensus 29 a~~~HPD~ 36 (371)
T PRK10767 29 AMKYHPDR 36 (371)
T ss_pred HHHHCCCC
Confidence 45666665
No 114
>PRK14289 chaperone protein DnaJ; Provisional
Probab=57.40 E-value=7.7 Score=44.25 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=12.3
Q ss_pred cCCCCCCCCceeeecCCCCCCCCCC
Q 003641 208 LLCPNCHEPFLAVETAPPPSNSSKT 232 (806)
Q Consensus 208 l~C~~C~g~F~A~e~~~p~c~g~gs 232 (806)
..|+.|.|.+......|+.|.|.|.
T Consensus 198 ~~C~~C~G~G~~~~~~C~~C~G~g~ 222 (386)
T PRK14289 198 STCPTCNGEGKIIKKKCKKCGGEGI 222 (386)
T ss_pred EecCCCCccccccCcCCCCCCCCcE
Confidence 3455555555555555555554443
No 115
>PRK14280 chaperone protein DnaJ; Provisional
Probab=57.18 E-value=7.5 Score=44.20 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=22.0
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCC
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKT 232 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs 232 (806)
.||..++.+|.....|.+. ..|+.|.|++.... ..|+.|+|.|.
T Consensus 125 vtLee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 171 (376)
T PRK14280 125 LTFEEAVFGKEKEIEIPKE-----ETCDTCHGSGAKPGTSKETCSHCGGSGQ 171 (376)
T ss_pred EEHHHHhCCceeEEEEeee-----ccCCCCCCcccCCCCCCccCCCCCCEEE
Confidence 4444555555555555443 45666655554332 23455555543
No 116
>PRK14295 chaperone protein DnaJ; Provisional
Probab=56.56 E-value=6.4 Score=45.01 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=22.4
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCC
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKT 232 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs 232 (806)
..+|..+..+|.....|.+. ..|+.|.|++.... ..|+.|.|.|.
T Consensus 147 ~lsLee~~~G~~k~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 194 (389)
T PRK14295 147 TLSFTEAIDGATVPLRLTSQ-----APCPACSGTGAKNGTTPRVCPTCSGTGQ 194 (389)
T ss_pred EEEHHHHhCCceEEEEeecc-----ccCCCCcccccCCCCCCcCCCCCCCEeE
Confidence 34555555555555555333 55555555554432 23445555543
No 117
>PRK14297 chaperone protein DnaJ; Provisional
Probab=56.29 E-value=8 Score=44.04 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=19.7
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCC
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSK 231 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~g 231 (806)
.+|..++.+|.....|.+. ..|+.|.|++.... ..|+.|+|.|
T Consensus 130 vsLee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G 175 (380)
T PRK14297 130 LTFEEAVFGVEKEISVTRN-----ENCETCNGTGAKPGTSPKTCDKCGGTG 175 (380)
T ss_pred EEHHHhcCCeEEEEEeeee-----ccCCCcccccccCCCcCccCCCccCeE
Confidence 4444445555554444333 44555555544321 2344455444
No 118
>PRK14279 chaperone protein DnaJ; Provisional
Probab=55.91 E-value=4.1 Score=46.65 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=36.4
Q ss_pred CCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 178 SHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 178 ~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
.......+|..++.+|.....+.+. ..|+.|+|++.... ..|+.|+|.|..
T Consensus 149 i~~~l~ltLee~~~G~~~~v~~~~~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 202 (392)
T PRK14279 149 LETETTLDFVEAAKGVTMPLRLTSP-----APCTTCHGSGARPGTSPKVCPTCNGSGVI 202 (392)
T ss_pred eEEEEEEEHHHHhCCeEEEEeeecc-----ccCCCCccccccCCCCCCCCCCCcceEEE
Confidence 3334456777788888887777555 78999999887643 456778888754
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=55.66 E-value=9.4 Score=31.33 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHH
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIAT 50 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~ 50 (806)
.-...+|.-++..|+++.|++.+.++...+|+...+..+++.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 344578999999999999999999999999997666666654
No 120
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.06 E-value=62 Score=35.44 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHH
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRK 88 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRk 88 (806)
..+.......+..|||.+|..++...+++--.+.++. ...+ +.. .-.+++.. ..+.+...+.+
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~---c~~~--L~~-----~L~e~~~~-------i~~~ld~~l~~ 190 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS---CVRH--LSS-----QLQETLEL-------IEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch---HHHH--HhH-----HHHHHHHH-------HHHHHHHHHHH
Confidence 3445566788999999999999999988754443332 1111 111 11233332 24667788888
Q ss_pred HHHHhCCCCCCCcchHHHHHHHHHHHHHhhhh
Q 003641 89 LALMLHPDKNKSIGADGAFKFVSEAWILLSDK 120 (806)
Q Consensus 89 Lal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~ 120 (806)
++..+.|+ .|..|.+||..|++.
T Consensus 191 ~~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 191 VCQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHhCCHH---------HHHHHHHHHHHHhhh
Confidence 88877766 578899999999864
No 121
>PRK14287 chaperone protein DnaJ; Provisional
Probab=54.95 E-value=9.3 Score=43.42 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=12.9
Q ss_pred ceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 185 TFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+|..+..+|.....|.+. ..|+.|.|++.
T Consensus 121 slee~~~G~~~~i~~~r~-----~~C~~C~G~G~ 149 (371)
T PRK14287 121 EFKEAVFGKETEIEIPRE-----ETCGTCHGSGA 149 (371)
T ss_pred EHHHhcCCeEEEEEEeee-----ccCCCCCCccc
Confidence 444444444444444333 44444444443
No 122
>PRK14301 chaperone protein DnaJ; Provisional
Probab=53.83 E-value=8.1 Score=43.93 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=22.2
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCC
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKT 232 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs 232 (806)
..+|..++.+|.....+.+. ..|+.|.|++.... ..|+.|+|.|.
T Consensus 125 ~vtLee~~~G~~k~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 172 (373)
T PRK14301 125 TVSFRQAAKGDEVTLRIPKN-----VTCDDCGGSGAAPGTSPETCRHCGGSGQ 172 (373)
T ss_pred eccHHHHhCCceEEEEeeec-----ccCCCCCCcccCCCCCCcccCCccCeeE
Confidence 34555555555555554333 45555555554322 23455555544
No 123
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=53.76 E-value=10 Score=36.33 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=28.2
Q ss_pred EccccccceEeeehh---cccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 189 VCHRCKMQYEYLRVY---LNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~y---lN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
.|+.|.+.+...... ......|+.|+|.+.. .|+.|.|.+..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~ 98 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQ 98 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEE
Confidence 788888876554322 2235678888888853 47888877654
No 124
>PF13446 RPT: A repeated domain in UCH-protein
Probab=53.04 E-value=31 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.9
Q ss_pred cchhcCCCCCCCHHHHHHHHHHHHH
Q 003641 67 WYGILGVTPQADDETVKKQYRKLAL 91 (806)
Q Consensus 67 ~Y~ILGV~~~A~~~eIKkaYRkLal 91 (806)
=|.+|||+++.+++.|-.+|+....
T Consensus 7 Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 7 AYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999998776
No 125
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.83 E-value=26 Score=22.47 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
+..+|.-.+..+++..|...+.++.++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456788999999999999999999998875
No 126
>PRK14293 chaperone protein DnaJ; Provisional
Probab=51.31 E-value=9.2 Score=43.46 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=15.0
Q ss_pred cCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 208 LLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 208 l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
..|+.|.|.+..+..+|+.|.|.+.+
T Consensus 187 ~~C~~C~G~G~~~~~~C~~C~G~g~v 212 (374)
T PRK14293 187 SECPTCNGTGQVIEDPCDACGGQGVK 212 (374)
T ss_pred eeCCCCCcceeEeccCCCCCCCCccc
Confidence 45666666666655556666555443
No 127
>PRK14283 chaperone protein DnaJ; Provisional
Probab=50.92 E-value=11 Score=42.76 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=27.4
Q ss_pred CCCceEEEccccccceEeeehhcccccCCCCCCCCceee---ecCCCCCCCCCCC
Q 003641 182 KPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV---ETAPPPSNSSKTP 233 (806)
Q Consensus 182 ~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~---e~~~p~c~g~gs~ 233 (806)
...+|..++.+|.....+.+. ..|+.|.|++... ...|+.|.|.|..
T Consensus 126 l~vsLed~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (378)
T PRK14283 126 VEITLEEAASGVEKDIKVRHT-----KKCPVCNGSRAEPGSEVKTCPTCGGTGQV 175 (378)
T ss_pred eeeeHHHHhCCcceEEEeeee-----ccCCCCCccccCCCCCCccCCCcCCccEE
Confidence 345566666666666666544 5677777666543 2344556666554
No 128
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=50.21 E-value=71 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
+..+|+..+..+++..|.+.+.++..++|..+.+.+.|..+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456778889999999999999999999999988777665554
No 129
>PRK14276 chaperone protein DnaJ; Provisional
Probab=49.76 E-value=11 Score=43.00 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 182 KPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 182 ~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
...||..+..+|.....|.+. ..|+.|+|++.... ..|+.|+|.|..
T Consensus 126 l~vtLee~~~G~~~~i~~~~~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 175 (380)
T PRK14276 126 VNLDFEEAIFGKEKEVSYNRE-----ATCHTCNGSGAKPGTSPVTCGKCHGSGVI 175 (380)
T ss_pred EEEEHHHhcCCeEEEEEeecc-----ccCCCCcCcccCCCCCCccCCCCCCeeEE
Confidence 344555666666666665444 66777777665432 345666666543
No 130
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=49.13 E-value=10 Score=42.58 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCCCceEEEccccccceEeeehhcccccCCCCCCCCceee---ecCCCCCCCCCCC
Q 003641 181 LKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV---ETAPPPSNSSKTP 233 (806)
Q Consensus 181 ~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~---e~~~p~c~g~gs~ 233 (806)
....+|..++.+|.....+.+. ..|+.|.|.+... ...|+.|+|.|..
T Consensus 122 ~l~vsLee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 172 (354)
T TIGR02349 122 DLELTFEEAVFGVEKEIEIPRK-----ESCETCHGTGAKPGTDPKTCPTCGGTGQV 172 (354)
T ss_pred EEEEEHHHHhCCeeEEEEeecC-----CcCCCCCCCCCCCCCCCccCCCCCCeeEE
Confidence 3445666777777777776554 7788888887654 3356777777654
No 131
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.69 E-value=28 Score=37.05 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHH
Q 003641 8 ATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYR 87 (806)
Q Consensus 8 A~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYR 87 (806)
+.-....|..+|+.+-+..|...+-||.+|.|+... .|+...+.|--.+.--..-.||-.||.++|.-. +.+++-+
T Consensus 134 sIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k--Al~RRAeayek~ek~eealeDyKki~E~dPs~~--ear~~i~ 209 (271)
T KOG4234|consen 134 SILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK--ALERRAEAYEKMEKYEEALEDYKKILESDPSRR--EAREAIA 209 (271)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 334456788899999999999999999999999753 334444444322222223468889999988755 4455555
Q ss_pred HH
Q 003641 88 KL 89 (806)
Q Consensus 88 kL 89 (806)
+|
T Consensus 210 rl 211 (271)
T KOG4234|consen 210 RL 211 (271)
T ss_pred hc
Confidence 43
No 132
>PRK05685 fliS flagellar protein FliS; Validated
Probab=48.58 E-value=53 Score=32.03 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGL 41 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~l 41 (806)
|.|++.+..|..++..+|+..+...+.||+.+.-.|
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999998765443
No 133
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=48.29 E-value=14 Score=38.47 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=24.9
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceeeec
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVET 222 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~ 222 (806)
..|+.|.+.+...+.. -.|+.|+|.|....+
T Consensus 100 ~~C~~C~G~G~~i~~~----~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----RECDTCAGTGRFRPT 130 (186)
T ss_pred CcCCCCCCeeEEecCC----CCCCCCCCccEEeee
Confidence 4699999999887642 689999999887654
No 134
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=47.30 E-value=10 Score=38.21 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=23.7
Q ss_pred Eccccccce-Ee-------eehhcccccCCCCCCCCceeeecCC
Q 003641 189 VCHRCKMQY-EY-------LRVYLNHNLLCPNCHEPFLAVETAP 224 (806)
Q Consensus 189 ~C~~Ck~~y-eY-------~r~ylN~~l~C~~C~g~F~A~e~~~ 224 (806)
.||+|.... +. .+..+...-.|++|+++|.++|.-.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence 599998644 21 1112333467999999999998643
No 135
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=5.4 Score=41.90 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHH--------HHHHHHHHhh-----------------
Q 003641 5 KDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIA--------TLDVYISAEN----------------- 59 (806)
Q Consensus 5 kdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La--------~~dv~~aa~~----------------- 59 (806)
..++.+++.|+..+... |...|.+.+.++...++.... ..... ..+|+.....
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~ 79 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGS 79 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCC
Confidence 46788999999888888 999999999999999987665 11111 1112110000
Q ss_pred -------------hhCCCCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHH
Q 003641 60 -------------KIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEY 126 (806)
Q Consensus 60 -------------k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~Y 126 (806)
......+||++||+....+.. ++.|+ |++..++ ...|..+..+...|.++ .|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 147 (306)
T KOG0714|consen 80 FSSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQY 147 (306)
T ss_pred CCCCCCCCcceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-ccccc
Confidence 001144577788866654433 44444 6665556 77788888888888888 88888
Q ss_pred hhhcc
Q 003641 127 DQRRN 131 (806)
Q Consensus 127 D~~~~ 131 (806)
|....
T Consensus 148 ~~~~~ 152 (306)
T KOG0714|consen 148 DSSGS 152 (306)
T ss_pred ccccc
Confidence 87664
No 136
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.36 E-value=1.3e+02 Score=37.21 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHh
Q 003641 64 EADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYD 127 (806)
Q Consensus 64 ~~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD 127 (806)
-.||-++| ++++| |--|||----++ .+--...+|..+ +|++.|+|.++...=|
T Consensus 1047 L~DYEd~l------pP~ei---ySllALaaca~r-aFGtCSKAfmkL-e~~e~l~~a~kq~ye~ 1099 (1189)
T KOG2041|consen 1047 LSDYEDFL------PPAEI---YSLLALAACAVR-AFGTCSKAFMKL-EAFEELDDAEKQEYEN 1099 (1189)
T ss_pred hccHhhcC------CHHHH---HHHHHHHHhhhh-hhhhhHHHHHHH-HhhhhCCHHHHHHHHH
Confidence 46877776 66666 555666543332 122344556555 5788888877765433
No 137
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=46.35 E-value=15 Score=45.55 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=29.4
Q ss_pred eEEEccccccceEeeehhcccccCCCCCCCCceeeecCCCCCCCC
Q 003641 186 FWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAPPPSNSS 230 (806)
Q Consensus 186 FwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~p~c~g~ 230 (806)
+.--|++|...+.|++. ...+.|..|+.. ..+-..||.|.+.
T Consensus 443 ~v~~Cp~Cd~~lt~H~~--~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKA--TGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecC--CCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 33467888877777776 467888888777 4556667777543
No 138
>PRK14291 chaperone protein DnaJ; Provisional
Probab=46.31 E-value=15 Score=41.94 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=26.0
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
..+|..+..+|.....+.+. ..|+.|+|++.... ..||.|+|.|..
T Consensus 137 ~vsLee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 185 (382)
T PRK14291 137 EISLEEAYTGTTVSLEVPRY-----VPCEACGGTGYDPGSGEKVCPTCGGSGEI 185 (382)
T ss_pred EEEHHHhhCCEEEEEEEeee-----ccCCCCccccCCCCCCCccCCCCCCceEE
Confidence 34555666666666655444 56666666665432 235556666543
No 139
>PRK14282 chaperone protein DnaJ; Provisional
Probab=46.02 E-value=9.4 Score=43.29 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 178 SHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 178 ~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
.......+|..++.+|.....|.+. ..|+.|.|++.... ..|+.|+|.|..
T Consensus 128 i~~~l~~slee~~~G~~~~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 181 (369)
T PRK14282 128 IRYEIEVTLSDLINGAEIPVEYDRY-----ETCPHCGGTGVEPGSGYVTCPKCHGTGRI 181 (369)
T ss_pred eEEEEEEEHHHhcCCeEEEEEeeec-----ccCCCCCccCCCCCCCCcCCCCCCCcCEE
Confidence 3444557888899999988888666 88999999987653 467889998865
No 140
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.96 E-value=19 Score=41.36 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
...+..++..++|+.|+.+++||+++.|....|..-|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777788888888888888888887666655555544
No 141
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=45.87 E-value=38 Score=25.11 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 11 AKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 11 a~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
+..+|......|||+.|..++.+|..+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 457899999999999999999997765443
No 142
>PRK14277 chaperone protein DnaJ; Provisional
Probab=45.65 E-value=14 Score=42.21 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=25.4
Q ss_pred CCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCC
Q 003641 182 KPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKT 232 (806)
Q Consensus 182 ~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs 232 (806)
...+|..+..+|.....+.+. ..|+.|.|++.... ..|+.|+|.|.
T Consensus 135 l~vtLee~~~G~~~~v~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 183 (386)
T PRK14277 135 LELTFEEAAFGTEKEIEVERF-----EKCDVCKGSGAKPGSKPVTCPVCHGTGQ 183 (386)
T ss_pred EEEEHHHHhCCeEEEEEEEee-----ccCCCCCCCCcCCCCCCccCCCCCCEEE
Confidence 334555566666665555444 56666666665432 33455666553
No 143
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=44.36 E-value=16 Score=35.69 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=29.2
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCceee
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV 220 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~ 220 (806)
..|+-.|..|...+...+..-.....|+.|+|.+..+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5799999999998877776533356899999988653
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=44.28 E-value=49 Score=26.95 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003641 7 EATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGL 41 (806)
Q Consensus 7 EA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~l 41 (806)
.+.-+..+|...+..|+++.|...+.++.+++|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44556678889999999999999999999999973
No 145
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=43.38 E-value=21 Score=30.55 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCCceEEEccccccceEeeehhcccccCCCCCCCCc
Q 003641 182 KPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPF 217 (806)
Q Consensus 182 ~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F 217 (806)
....+.++|+.|.+.+++. ....|+.|+|.+
T Consensus 36 ~~~~~~~~C~~C~G~G~~i-----~~~~C~~C~G~g 66 (66)
T PF00684_consen 36 GVFQMQQTCPKCGGTGKII-----EKDPCKTCKGSG 66 (66)
T ss_dssp TTEEEEEE-TTTSSSSEE------TSSB-SSSTTSS
T ss_pred eEEEEEEECCCCcceeeEE-----CCCCCCCCCCcC
Confidence 3457889999999999985 246899999864
No 146
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=42.69 E-value=33 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=24.0
Q ss_pred ceEEEccccccceEeeehhc-ccccCCCCCCCC
Q 003641 185 TFWTVCHRCKMQYEYLRVYL-NHNLLCPNCHEP 216 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~yl-N~~l~C~~C~g~ 216 (806)
.|--.|+.|...++.....- ...+.||.|+..
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKISDDPLATCPECGGD 35 (41)
T ss_pred CEEEEcCCCCCEEEEEEecCCCCCCCCCCCCCc
Confidence 45557999999888776543 567889999873
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=42.63 E-value=49 Score=27.42 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHH
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIA 49 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La 49 (806)
+-+...-+...|.-++..|+|.+|.+.+.++.++.|+...+.++.+
T Consensus 25 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3445555667888899999999999999999999998765555544
No 148
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.32 E-value=62 Score=34.51 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 4 NKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 4 NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
+|--..=..++|+.++..|||+.|++++.++...|.. +++..+++.+-
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~-egW~~l~~~~l 221 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR-EGWWSLLTEVL 221 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 4555566789999999999999999999999888876 45555555443
No 149
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.99 E-value=65 Score=30.09 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHH
Q 003641 5 KDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIAT 50 (806)
Q Consensus 5 kdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~ 50 (806)
+..|.++...+...+.+|||..|.+.+.++.++- +.+.+..++++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~-~~~~l~~L~AA 100 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS-DNPLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 4567888999999999999999999999998873 33456655544
No 150
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.71 E-value=39 Score=27.11 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQN 36 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~ 36 (806)
+++|..++..||+++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999999999998874
No 151
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=41.70 E-value=12 Score=37.14 Aligned_cols=36 Identities=22% Similarity=0.625 Sum_probs=25.5
Q ss_pred EEEccccccceEeeehhcc----cccCCCCCCCCceeeec
Q 003641 187 WTVCHRCKMQYEYLRVYLN----HNLLCPNCHEPFLAVET 222 (806)
Q Consensus 187 wT~C~~Ck~~yeY~r~ylN----~~l~C~~C~g~F~A~e~ 222 (806)
.-.|+.|..+|.+.-.... ....||+|++.....+.
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDDN 138 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcCc
Confidence 3469999999998544321 12899999998765543
No 152
>PRK11827 hypothetical protein; Provisional
Probab=41.65 E-value=15 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCce
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
-+||.|++.-.|... ...|.|..|+-.|-
T Consensus 9 LaCP~ckg~L~~~~~--~~~Lic~~~~laYP 37 (60)
T PRK11827 9 IACPVCNGKLWYNQE--KQELICKLDNLAFP 37 (60)
T ss_pred eECCCCCCcCeEcCC--CCeEECCccCeecc
Confidence 479999988887643 45688888876653
No 153
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=41.63 E-value=14 Score=37.90 Aligned_cols=32 Identities=19% Similarity=0.699 Sum_probs=26.5
Q ss_pred EccccccceEeeehhcccccCCCCCCCCceeee
Q 003641 189 VCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE 221 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e 221 (806)
+|+.|..+|.+.-. ++..-.||.|++...-++
T Consensus 119 ~Cp~C~~rytf~eA-~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 119 FCPNCHIRFTFDEA-MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred ECCCCCcEEeHHHH-hhcCCcCCCCCCCCeecc
Confidence 69999999999876 456799999999977653
No 154
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.23 E-value=50 Score=39.15 Aligned_cols=50 Identities=20% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYI 55 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~ 55 (806)
..|..++....+.|.++.|+.|.+++..|..|+|.-.---+.+++|.+.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l 162 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL 162 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH
Confidence 46888899999999999999999999999999999644456777777654
No 155
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=40.05 E-value=13 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=18.1
Q ss_pred ccccccceEeeehhcccccCCCCCCCCcee
Q 003641 190 CHRCKMQYEYLRVYLNHNLLCPNCHEPFLA 219 (806)
Q Consensus 190 C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A 219 (806)
||.|+...+-....--..-.|++|.|.++-
T Consensus 2 CP~C~~~l~~~~~~~~~id~C~~C~G~W~d 31 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDVCPSCGGIWFD 31 (41)
T ss_pred cCCCCcccceEEECCEEEEECCCCCeEEcc
Confidence 888876444322221234569999998764
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=38.47 E-value=50 Score=37.17 Aligned_cols=82 Identities=20% Similarity=0.104 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCH--HHHHH
Q 003641 7 EATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADD--ETVKK 84 (806)
Q Consensus 7 EA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~--~eIKk 84 (806)
.+.-...+|..++..+++..|+..+.+|.++.|....+...++.+...+.. .-.....|-..|.+.+.-.. .-|.+
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE--YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344556788999999999999999999999999876665555554433310 00112244455666654332 23455
Q ss_pred HHHHHH
Q 003641 85 QYRKLA 90 (806)
Q Consensus 85 aYRkLa 90 (806)
...+|.
T Consensus 113 ~~~kl~ 118 (356)
T PLN03088 113 CDEKIA 118 (356)
T ss_pred HHHHHH
Confidence 555553
No 157
>PRK14286 chaperone protein DnaJ; Provisional
Probab=37.73 E-value=12 Score=42.51 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCCCCCCceEEEccccccceEeeehhcccccCCCCCCCCceeee---cCCCCCCCCCCC
Q 003641 178 SHKLKPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE---TAPPPSNSSKTP 233 (806)
Q Consensus 178 ~~~~~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e---~~~p~c~g~gs~ 233 (806)
.......||..++.+|.....|.+. ..|+.|+|++.... ..|+.|+|.|..
T Consensus 126 i~~~l~vtLee~~~G~~k~i~~~r~-----~~C~~C~G~G~~~~~~~~~C~~C~G~G~v 179 (372)
T PRK14286 126 LRYNLEVSLEDAALGREYKIEIPRL-----ESCVDCNGSGASKGSSPTTCPDCGGSGQI 179 (372)
T ss_pred eeEEEEEEHHHHhCCeeEEEEeecc-----ccCCCCcCCCcCCCCCCccCCCCcCeEEE
Confidence 3334456777788888887777655 77888888876543 346777777754
No 158
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=36.66 E-value=16 Score=36.72 Aligned_cols=33 Identities=15% Similarity=0.499 Sum_probs=26.1
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceeee
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVE 221 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e 221 (806)
-+|+.|..+|.+.-.+ +..-.||.|++...-++
T Consensus 110 Y~Cp~c~~r~tf~eA~-~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 110 FICPNMCVRFTFNEAM-ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred EECCCCCcEeeHHHHH-HcCCcCCCCCCEeeecc
Confidence 3699999999987775 45789999999865443
No 159
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=35.92 E-value=1.2e+02 Score=28.06 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 3 CNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 3 ~NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
-+-+.+.....+|...+..+++..|...+.++..++|....+...++.+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 61 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACC 61 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455666778899999999999999999999999998755554444443
No 160
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.22 E-value=1.2e+02 Score=34.18 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHh-hhhCCCCCcchhcCCCCCCCHH
Q 003641 3 CNKDEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAE-NKIGGEADWYGILGVTPQADDE 80 (806)
Q Consensus 3 ~NkdEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~-~k~~~~~D~Y~ILGV~~~A~~~ 80 (806)
.|+-||.-|+..|...-..|..+.|.+++..|..|.|....+ |...-...... .-+....-|.+-|-++|.-+++
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 357899999999999999999999999999999999997433 22221111111 1122334555677777765543
No 161
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=34.94 E-value=1.1e+02 Score=37.25 Aligned_cols=112 Identities=7% Similarity=0.068 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH----------HHhhhhCC-CCCcchhcC--CCCCCCH
Q 003641 13 EISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYI----------SAENKIGG-EADWYGILG--VTPQADD 79 (806)
Q Consensus 13 eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~----------aa~~k~~~-~~D~Y~ILG--V~~~A~~ 79 (806)
.+|..++..|+++.|...+.+|.++.|....+..+|..+.... ........ ...++-.++ +...-..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH
Confidence 4566677888999999999999999998765555444432111 00000111 111221111 1111233
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHH
Q 003641 80 ETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEY 126 (806)
Q Consensus 80 ~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~Y 126 (806)
++-.+.|++ ++..+|+..+. .-.++-..+.+|++.+..+.++..+
T Consensus 369 deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~~~W 413 (656)
T PRK15174 369 SEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPERLDW 413 (656)
T ss_pred HHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccchhhH
Confidence 444445544 66777886543 3346677788888888888776433
No 162
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=34.79 E-value=3.1e+02 Score=32.94 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 7 EATRAKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 7 EA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
.|...++.+..++..++|+.|...+.+|.++.|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4677889999999999999999999999999996
No 163
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.18 E-value=91 Score=22.63 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGL 41 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~l 41 (806)
.-+-.+|..++..|++..|+.++.+|..+.-.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 345678999999999999999999987765443
No 164
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=34.14 E-value=53 Score=25.79 Aligned_cols=32 Identities=22% Similarity=0.615 Sum_probs=24.5
Q ss_pred ceEEEccccccceEeeehhcc-cccCCCCCCCC
Q 003641 185 TFWTVCHRCKMQYEYLRVYLN-HNLLCPNCHEP 216 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~ylN-~~l~C~~C~g~ 216 (806)
.|--.|..|...++....+-. ..+.||.|++.
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSISEDDPVPCPECGST 35 (42)
T ss_pred CEEEEeCCCCCEEEEEEEcCCCCCCcCCCCCCC
Confidence 455679999988888777644 57889999873
No 165
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=32.94 E-value=2.3e+02 Score=29.11 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHH
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIA 49 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La 49 (806)
+.+..+..++..++..++++.|...+.+|.++.|....+...++
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA 114 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA 114 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567788899999999999999999999999998755544443
No 166
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=32.44 E-value=85 Score=25.23 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=23.3
Q ss_pred ceEEEccccccceEeeehhc-ccccCCCCCCCC
Q 003641 185 TFWTVCHRCKMQYEYLRVYL-NHNLLCPNCHEP 216 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~yl-N~~l~C~~C~g~ 216 (806)
.|--.|..|...|+..+.+- ...+.||.|...
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred CEEEEeCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 45567999999999876542 245679999873
No 167
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=32.43 E-value=26 Score=30.14 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=23.6
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCcee
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLA 219 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A 219 (806)
-+||-|++.-.|... +..|.|+.|+..|-.
T Consensus 9 LaCP~~kg~L~~~~~--~~~L~c~~~~~aYpI 38 (60)
T COG2835 9 LACPVCKGPLVYDEE--KQELICPRCKLAYPI 38 (60)
T ss_pred eeccCcCCcceEecc--CCEEEecccCceeec
Confidence 579999998777666 567899999888753
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=31.69 E-value=2.6e+02 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcH
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGI 44 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i 44 (806)
....+.|...+..|+|+.|.+.+.++...+|.-+-+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a 68 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS 68 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 344556666677777777777777777777765433
No 169
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=31.50 E-value=1.1e+02 Score=28.32 Aligned_cols=45 Identities=11% Similarity=-0.124 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 003641 9 TRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDV 53 (806)
Q Consensus 9 ~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv 53 (806)
.-...+|.-.+..++++.|...+.++.+++|........++.+..
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445567888888899999999999999998887666555555544
No 170
>PRK05978 hypothetical protein; Provisional
Probab=31.18 E-value=25 Score=35.25 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=27.8
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCceee
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV 220 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~ 220 (806)
..+.--||.|. ++...+.||...-.|+.|...|...
T Consensus 30 rGl~grCP~CG-~G~LF~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 30 RGFRGRCPACG-EGKLFRAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred HHHcCcCCCCC-CCcccccccccCCCccccCCccccC
Confidence 45566799997 4666678899999999998887644
No 171
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.78 E-value=26 Score=33.35 Aligned_cols=10 Identities=40% Similarity=1.364 Sum_probs=4.8
Q ss_pred cCCCCCCCCc
Q 003641 208 LLCPNCHEPF 217 (806)
Q Consensus 208 l~C~~C~g~F 217 (806)
+.||.|...|
T Consensus 27 ivCP~CG~~~ 36 (108)
T PF09538_consen 27 IVCPKCGTEF 36 (108)
T ss_pred ccCCCCCCcc
Confidence 4455554444
No 172
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=30.74 E-value=13 Score=41.61 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=25.6
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
.-+.|+|..|..+|...-. +.-.-+||.|.|.+.
T Consensus 243 KY~~TAC~rC~t~y~le~A-~~~~wrCpkCGg~ik 276 (403)
T COG1379 243 KYHLTACSRCYTRYSLEEA-KSLRWRCPKCGGKIK 276 (403)
T ss_pred chhHHHHHHhhhccCcchh-hhhcccCcccccchh
Confidence 4567999999999886544 344578999999653
No 173
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=30.57 E-value=24 Score=39.04 Aligned_cols=35 Identities=26% Similarity=0.681 Sum_probs=23.6
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+...|+-|+.|.... |.+.+......||.|...|.
T Consensus 23 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 23 PEGLWTKCPSCGQVL-YRKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCCeeECCCccchh-hHHHHHhcCCCCCCCCCCee
Confidence 455799999998633 33333222359999988764
No 174
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.28 E-value=25 Score=38.77 Aligned_cols=35 Identities=26% Similarity=0.724 Sum_probs=23.8
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+...|+-|+.|.... |...+......||.|...|.
T Consensus 22 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 22 PEGVWTKCPKCGQVL-YTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCCeeECCCCcchh-hHHHHHhhCCCCCCCCCcCc
Confidence 445799999998533 33333334479999988754
No 175
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=29.67 E-value=29 Score=38.61 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+...|+-|+.|.... |...+......||.|...|.
T Consensus 34 p~~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 34 YKHLWVQCENCYGLN-YKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCCeeECCCccchh-hHHHHHHcCCCCCCCCCCcC
Confidence 455799999998533 33333333469999988754
No 176
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=29.54 E-value=80 Score=33.33 Aligned_cols=53 Identities=8% Similarity=0.111 Sum_probs=37.4
Q ss_pred ccccccCCCCCCCcccccccCCCCCCeEEEecCCCCCCcceeEEEEEee--------cCCceEEEEec
Q 003641 492 LSINVPDPDFHDFDKDRTEKSFGDNQVWAAYDDDDGMPRYYAMIHGVIS--------LNPFKMRISWL 551 (806)
Q Consensus 492 ~~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~s--------~~pFkl~iswL 551 (806)
..+.|-.|++++|+. |....|..|- +.++.|-+-|||..|.. ...++|++.|+
T Consensus 11 gD~VYv~p~~f~~~~-~~~~~~~~G~------N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 11 GDFLYVSPDAFAEEE-RERATFKAGR------NVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred CCeEEECcccccccc-cccccccccc------cCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 346788899999986 5666666664 44666777777777742 12578999998
No 177
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=29.46 E-value=1.5e+02 Score=26.61 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=36.3
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSE 112 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~e 112 (806)
++.-.+++++|-|+..||+.+-++.++++.--..++....++|..-.+
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~ 50 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVA 50 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Confidence 455678899999999999999988888886665555566667765443
No 178
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=29.39 E-value=67 Score=34.99 Aligned_cols=35 Identities=20% Similarity=0.598 Sum_probs=22.1
Q ss_pred CCCceEEEccccccceEeeehhcccccCCCCCCCC
Q 003641 182 KPNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEP 216 (806)
Q Consensus 182 ~~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~ 216 (806)
.+...-.+|.+|...|-+..--.|...+||+|++.
T Consensus 152 ~p~~~rv~CghC~~~Fl~~~~~~~tlARCPHCrKv 186 (256)
T PF09788_consen 152 QPGSCRVICGHCSNTFLFNTLTSNTLARCPHCRKV 186 (256)
T ss_pred CCCceeEECCCCCCcEeccCCCCCccccCCCCcee
Confidence 34556677777777777663333455677777754
No 179
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.09 E-value=29 Score=38.87 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=0.0
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceeeecCCCCCCCCCCCccccc
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAPPPSNSSKTPWNFSQ 238 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs~~~~~~ 238 (806)
++|.-|.+++. +.|++|+|.|. .+|.+|.|+|+...+.+
T Consensus 235 ~~C~~C~G~G~---------~~C~tC~grG~---k~C~TC~gtgsll~~t~ 273 (406)
T KOG2813|consen 235 DLCYMCHGRGI---------KECHTCKGRGK---KPCTTCSGTGSLLNYTR 273 (406)
T ss_pred chhhhccCCCc---------ccCCcccCCCC---cccccccCccceeeeEE
No 180
>PRK14288 chaperone protein DnaJ; Provisional
Probab=28.77 E-value=59 Score=37.03 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=34.4
Q ss_pred EEccccccceEeee--hhcccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 188 TVCHRCKMQYEYLR--VYLNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 188 T~C~~Ck~~yeY~r--~ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
..|+.|.+.+.... .++-....|+.|.|.+..+..+|+.|.|.|.+
T Consensus 157 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 204 (369)
T PRK14288 157 ETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYI 204 (369)
T ss_pred cCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceE
Confidence 56888987775422 12233458999999999999999999998765
No 181
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=28.72 E-value=3.7e+02 Score=24.44 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--CcHH-HHHHHHHH
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGL--EGIP-QMIATLDV 53 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~l--e~i~-q~La~~dv 53 (806)
++......+|+.++..|++++|...++...+-.+.. +... .||.++++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~ 70 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL 70 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH
Confidence 445566789999999999999999999999999887 3332 45555444
No 182
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=28.64 E-value=97 Score=30.05 Aligned_cols=46 Identities=11% Similarity=-0.054 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 7 EATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 7 EA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
.+.-...+|......|++..|..++.+|..+.|........+..+-
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445567888899999999999999999999998866665555443
No 183
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=28.04 E-value=33 Score=37.72 Aligned_cols=35 Identities=26% Similarity=0.677 Sum_probs=25.7
Q ss_pred CCceEEEccccccceEeeehhcccccCCCCCCCCce
Q 003641 183 PNTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 183 ~~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
+...|+-|+.|.. .-|....-...-+||.|...+.
T Consensus 24 ~e~lw~KCp~c~~-~~y~~eL~~n~~vcp~c~~h~r 58 (294)
T COG0777 24 PEGLWTKCPSCGE-MLYRKELESNLKVCPKCGHHMR 58 (294)
T ss_pred CCCceeECCCccc-eeeHHHHHhhhhcccccCcccc
Confidence 3789999999984 4455555455688999987653
No 184
>PF15469 Sec5: Exocyst complex component Sec5
Probab=27.97 E-value=1.4e+02 Score=30.14 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=48.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHHHHH
Q 003641 16 EKKFTARDFTGAKKFAVKAQNLYPGLE----GIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLAL 91 (806)
Q Consensus 16 e~~~~~~D~~gA~r~a~kAq~L~P~le----~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal 91 (806)
.+.+..+||+.|.+.|.+|+.++-... -+..++..++..+..- ....|.-|.-.+ .+.++..+.-+.| +
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~-----r~~l~~~L~~~~-~s~~~~~~~i~~L-l 166 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF-----REKLWEKLLSPP-SSQEEFLKLIRKL-L 166 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCCC-CCHHHHHHHHHHH-H
Confidence 467899999999999999999997763 2234444444433211 124455554433 6667777777554 4
Q ss_pred HhCCCCCC
Q 003641 92 MLHPDKNK 99 (806)
Q Consensus 92 ~~HPDkn~ 99 (806)
.++|+-+|
T Consensus 167 ~L~~~~dP 174 (182)
T PF15469_consen 167 ELNVEEDP 174 (182)
T ss_pred hCCCCCCH
Confidence 45676553
No 185
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.70 E-value=93 Score=35.99 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHHHHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLAL 91 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal 91 (806)
..+|--+++.++|..|++...+++.+.|.- +..|...-..+++....-....||-.+|.|.|.- .+|+.+..+|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l~~ 336 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 457777899999999999999999999985 4445554444443222112234666666666654 455555555544
Q ss_pred Hh
Q 003641 92 ML 93 (806)
Q Consensus 92 ~~ 93 (806)
++
T Consensus 337 k~ 338 (397)
T KOG0543|consen 337 KI 338 (397)
T ss_pred HH
Confidence 43
No 186
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.57 E-value=45 Score=32.74 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=15.9
Q ss_pred cccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 204 LNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 204 lN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
|.....||+|...|.-....+..|--.|+.
T Consensus 6 lGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~ 35 (129)
T TIGR02300 6 LGTKRICPNTGSKFYDLNRRPAVSPYTGEQ 35 (129)
T ss_pred hCccccCCCcCccccccCCCCccCCCcCCc
Confidence 344455666666666555544444444444
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=27.14 E-value=46 Score=40.94 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=28.7
Q ss_pred ceEEEccccccceEeeehhcccccCCCCCCCCceeeecCCCCCCC
Q 003641 185 TFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAPPPSNS 229 (806)
Q Consensus 185 TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~p~c~g 229 (806)
.+-..|++|.....|++. ...+.|..|... +....||.|.+
T Consensus 390 g~~~~C~~C~~~L~~h~~--~~~l~Ch~CG~~--~~p~~Cp~Cgs 430 (665)
T PRK14873 390 RTPARCRHCTGPLGLPSA--GGTPRCRWCGRA--APDWRCPRCGS 430 (665)
T ss_pred cCeeECCCCCCceeEecC--CCeeECCCCcCC--CcCccCCCCcC
Confidence 445578888888888654 346889999865 24667788854
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=26.55 E-value=6.3e+02 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIP 45 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~ 45 (806)
..+|...+..+|+..|...+.+..+++|+-+.+.
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 4566667777777777777777777777766554
No 189
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=26.51 E-value=1.1e+02 Score=29.35 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-c----chHHHHHHHHHHHHHhh
Q 003641 76 QADDETVKKQYRKLALMLHPDKNKS-I----GADGAFKFVSEAWILLS 118 (806)
Q Consensus 76 ~A~~~eIKkaYRkLal~~HPDkn~~-~----~A~~aFk~I~eAy~vLs 118 (806)
..+..+++.+.|.+-++.|||.-.. | -.+..++.++.-.+.|.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 4566889999999999999997532 2 24566777776666665
No 190
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.16 E-value=50 Score=31.48 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=23.1
Q ss_pred cccccCCCCCCCCceeeecCCCCCCCCCCCc
Q 003641 204 LNHNLLCPNCHEPFLAVETAPPPSNSSKTPW 234 (806)
Q Consensus 204 lN~~l~C~~C~g~F~A~e~~~p~c~g~gs~~ 234 (806)
|.....||+|...|.-....|..|--.|+.|
T Consensus 6 lGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 6 LGTKRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cCCcccCCCCcchhccCCCCCccCCCCCCcc
Confidence 5667889999999998887665565556554
No 191
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=25.14 E-value=67 Score=30.82 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=18.9
Q ss_pred CceEEEccccccceEeeehhcccccCCCCCCCCceee
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV 220 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~ 220 (806)
..+...|+.|.+.++. .|+.|+|.+...
T Consensus 72 ~q~~~~C~~C~G~Gk~---------~C~~C~G~G~~~ 99 (111)
T PLN03165 72 EKEVSKCINCDGAGSL---------TCTTCQGSGIQP 99 (111)
T ss_pred EEEEEECCCCCCccee---------eCCCCCCCEEEe
Confidence 3456778888877752 388888776643
No 192
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.77 E-value=1.4e+02 Score=29.68 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGL 41 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~l 41 (806)
|.|++++..|..+|+.+|+..+-..+.||+.++-.|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999998877544
No 193
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=24.74 E-value=1.2e+02 Score=31.12 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGI 44 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i 44 (806)
..+|.-.+..|++..|...+.++.+.+|.....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 367888999999999999999999999986433
No 194
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=24.68 E-value=49 Score=32.52 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=29.8
Q ss_pred CceEEEccccccceEeeehhcc-cccCCCCCCCCcee
Q 003641 184 NTFWTVCHRCKMQYEYLRVYLN-HNLLCPNCHEPFLA 219 (806)
Q Consensus 184 ~TFwT~C~~Ck~~yeY~r~ylN-~~l~C~~C~g~F~A 219 (806)
.+|.-.|..|...+...+...+ ...+|..|+|.+..
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~~ 145 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLIL 145 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEEe
Confidence 4788899999988887777666 67999999998763
No 195
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.51 E-value=57 Score=27.42 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=30.8
Q ss_pred EccccccceEeeehhcccccCCCCCCCCceeeecCC
Q 003641 189 VCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAP 224 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~ 224 (806)
.|+.|...++.....+...+.|+.|.-.+..+...+
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 699999999998888888899999998887776655
No 196
>PRK14296 chaperone protein DnaJ; Provisional
Probab=23.92 E-value=57 Score=37.23 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=42.3
Q ss_pred CCCCCCCCceEEEccccccceEeeeh------hcccccCCCCCCCCceeeecCCCCCCCCCCC
Q 003641 177 PSHKLKPNTFWTVCHRCKMQYEYLRV------YLNHNLLCPNCHEPFLAVETAPPPSNSSKTP 233 (806)
Q Consensus 177 ~~~~~~~~TFwT~C~~Ck~~yeY~r~------ylN~~l~C~~C~g~F~A~e~~~p~c~g~gs~ 233 (806)
.............|+.|.+.+..... .......|+.|.|.+..+..+|+.|.|.|.+
T Consensus 156 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v 218 (372)
T PRK14296 156 FGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKY 218 (372)
T ss_pred CCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEE
Confidence 33334445567889999988865432 1234568999999999999999999998754
No 197
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.74 E-value=3e+02 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCcchhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 003641 65 ADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKF 109 (806)
Q Consensus 65 ~D~Y~ILGV~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~ 109 (806)
++--.+-|+.|-|+++||..+-.+.++++.=-..++....++|..
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 344456688999999999999999999987666666666666654
No 198
>smart00439 BAH Bromo adjacent homology domain.
Probab=23.36 E-value=1.8e+02 Score=26.62 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCCCCeEEEecCCCCCCcceeEEEEEeecCC---ceEEEEeccc
Q 003641 513 FGDNQVWAAYDDDDGMPRYYAMIHGVISLNP---FKMRISWLNS 553 (806)
Q Consensus 513 F~~gQIWA~Yd~~DgmPR~Ya~I~kV~s~~p---Fkl~iswLe~ 553 (806)
|++|+.=-+=.++..-|.+.|+|.+|..... ..+++.|+-.
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~r 45 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYR 45 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
Confidence 4455532222332357999999999975433 5899999844
No 199
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.20 E-value=51 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=16.9
Q ss_pred EccccccceEeeehhcccccCCCCCCCCc
Q 003641 189 VCHRCKMQYEYLRVYLNHNLLCPNCHEPF 217 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F 217 (806)
.||.|.........+=--.-.||.|+|--
T Consensus 3 lCP~C~v~l~~~~rs~vEiD~CPrCrGVW 31 (88)
T COG3809 3 LCPICGVELVMSVRSGVEIDYCPRCRGVW 31 (88)
T ss_pred ccCcCCceeeeeeecCceeeeCCccccEe
Confidence 57777765555444322345677777764
No 200
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=23.11 E-value=1.5e+02 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNL 37 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L 37 (806)
.+|...+..|+..|..|||..|+.++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999998776
No 201
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.08 E-value=84 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Q 003641 15 SEKKFTARDFTGAKKFAVKAQNLY 38 (806)
Q Consensus 15 Ae~~~~~~D~~gA~r~a~kAq~L~ 38 (806)
++.+...||+++|++...+|+.+.
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHHHH
Confidence 678899999999999999998775
No 202
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.99 E-value=59 Score=40.04 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=23.9
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceeeecCCCCCCC
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAPPPSNS 229 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~p~c~g 229 (806)
..|+.|.....|+.. ...+.|..|+... .+...||.|.+
T Consensus 391 ~~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~-~~~~~Cp~Cg~ 429 (679)
T PRK05580 391 AECPHCDASLTLHRF--QRRLRCHHCGYQE-PIPKACPECGS 429 (679)
T ss_pred cCCCCCCCceeEECC--CCeEECCCCcCCC-CCCCCCCCCcC
Confidence 357777766666654 3557788887653 23445777754
No 203
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.65 E-value=48 Score=32.55 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCce
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFL 218 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~ 218 (806)
.+|+.|..+|--+.+ ..+.||.|...|.
T Consensus 10 r~Cp~cg~kFYDLnk---~p~vcP~cg~~~~ 37 (129)
T TIGR02300 10 RICPNTGSKFYDLNR---RPAVSPYTGEQFP 37 (129)
T ss_pred ccCCCcCccccccCC---CCccCCCcCCccC
Confidence 479999987733322 4699999998864
No 204
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.69 E-value=68 Score=38.07 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=25.4
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceeeecCCCCCCC
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAVETAPPPSNS 229 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~e~~~p~c~g 229 (806)
..|++|.....|++. ...+.|..|..... +...||.|.+
T Consensus 223 ~~C~~C~~~l~~h~~--~~~l~Ch~Cg~~~~-~~~~Cp~C~s 261 (505)
T TIGR00595 223 LCCPNCDVSLTYHKK--EGKLRCHYCGYQEP-IPKTCPQCGS 261 (505)
T ss_pred cCCCCCCCceEEecC--CCeEEcCCCcCcCC-CCCCCCCCCC
Confidence 347888777777664 44678888875532 3446777754
No 205
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=21.67 E-value=1.7e+02 Score=30.10 Aligned_cols=45 Identities=13% Similarity=0.040 Sum_probs=29.2
Q ss_pred HHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 8 ATRAKEISEKK-FTARD--FTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 8 A~ra~eiAe~~-~~~~D--~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
+.-...+|... +..++ +..|++.+.+|.+++|....+.-+|+...
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 33445566654 56666 47888888888888887765555555544
No 206
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.61 E-value=65 Score=30.76 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEccccccceEeeehhcccccCCCCCCCCceee
Q 003641 188 TVCHRCKMQYEYLRVYLNHNLLCPNCHEPFLAV 220 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A~ 220 (806)
-.|+.|...+..... ...||.|++....+
T Consensus 71 ~~C~~Cg~~~~~~~~----~~~CP~Cgs~~~~i 99 (115)
T TIGR00100 71 CECEDCSEEVSPEID----LYRCPKCHGIMLQV 99 (115)
T ss_pred EEcccCCCEEecCCc----CccCcCCcCCCcEE
Confidence 349999977666433 36799998876544
No 207
>PRK12370 invasion protein regulator; Provisional
Probab=21.43 E-value=3.3e+02 Score=32.45 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=29.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHH
Q 003641 14 ISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLD 52 (806)
Q Consensus 14 iAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~d 52 (806)
+|..++..++++.|...+.+|.+++|+...+...+..+.
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 382 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNL 382 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345567789999999999999999999766555554433
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.92 E-value=3.3e+02 Score=32.26 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCc
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPGLEG 43 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~ 43 (806)
+.+.-+..++..++..++|+.|...+.+|.++.|+...
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae 110 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE 110 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Confidence 34667888999999999999999999999999999764
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.86 E-value=3.4e+02 Score=29.49 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=28.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCC
Q 003641 9 TRAKEISEKK-FTARDFTGAKKFAVKAQNLYPGLE 42 (806)
Q Consensus 9 ~ra~eiAe~~-~~~~D~~gA~r~a~kAq~L~P~le 42 (806)
..+.+.|..+ +..++|+.|...+.+..+.||.-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~ 177 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST 177 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc
Confidence 5567778776 667999999999999999999874
No 210
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.78 E-value=2.5e+02 Score=29.45 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhh
Q 003641 74 TPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLS 118 (806)
Q Consensus 74 ~~~A~~~eIKkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLs 118 (806)
+++|+.+||..|+.+|..+|- +.+..-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-------gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-------GDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHH
Confidence 478999999999999999983 44667778999998554
No 211
>PF14353 CpXC: CpXC protein
Probab=20.62 E-value=58 Score=31.14 Aligned_cols=31 Identities=26% Similarity=0.729 Sum_probs=18.8
Q ss_pred EEccccccceEeeeh-hccc----------------ccCCCCCCCCce
Q 003641 188 TVCHRCKMQYEYLRV-YLNH----------------NLLCPNCHEPFL 218 (806)
Q Consensus 188 T~C~~Ck~~yeY~r~-ylN~----------------~l~C~~C~g~F~ 218 (806)
..||.|...+.+..- .+|. ...||+|+..|.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 368888877765211 1221 346888888874
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.55 E-value=1.1e+03 Score=25.59 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHhhhhCCCCCcchhcCCCCCCCHHHHHHHHHHHHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLAL 91 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~dv~~aa~~k~~~~~D~Y~ILGV~~~A~~~eIKkaYRkLal 91 (806)
.-+|+.++..||+++|...+.++...||.-......+-.+-.. |.-| -+.++-++.|.++ +
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~-------------~~~~-----g~~~~A~~~~~~v-i 244 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI-------------MQDK-----GDTAKAKAVYQQV-I 244 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH-------------HHHc-----CCHHHHHHHHHHH-H
Confidence 4568888889999999999999999999876555444332221 1111 1446667777755 5
Q ss_pred HhCCCCC
Q 003641 92 MLHPDKN 98 (806)
Q Consensus 92 ~~HPDkn 98 (806)
..+|+..
T Consensus 245 ~~yP~s~ 251 (263)
T PRK10803 245 KKYPGTD 251 (263)
T ss_pred HHCcCCH
Confidence 5567754
No 213
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=20.40 E-value=54 Score=39.56 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=0.0
Q ss_pred EccccccceEeeehhcccccCCCCCCCC---------------------ceeeecCCCCCCCCCCC
Q 003641 189 VCHRCKMQYEYLRVYLNHNLLCPNCHEP---------------------FLAVETAPPPSNSSKTP 233 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~ylN~~l~C~~C~g~---------------------F~A~e~~~p~c~g~gs~ 233 (806)
.|+-|.+.+.....+ .-||-|+|. |...+++||-|.|.|++
T Consensus 4 ~C~~C~g~G~i~v~~----e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V 65 (715)
T COG1107 4 KCPECGGKGKIVVGE----EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTV 65 (715)
T ss_pred cccccCCCceEeeee----eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeE
No 214
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.29 E-value=53 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.703 Sum_probs=15.5
Q ss_pred EccccccceEeeehhcccccCCCCCCCCcee
Q 003641 189 VCHRCKMQYEYLRVYLNHNLLCPNCHEPFLA 219 (806)
Q Consensus 189 ~C~~Ck~~yeY~r~ylN~~l~C~~C~g~F~A 219 (806)
.||.|.... ......||+|.-.|.|
T Consensus 2 ~CP~C~~~V------~~~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 2 TCPECGAEV------PESAKFCPHCGYDFEA 26 (26)
T ss_pred cCCCCcCCc------hhhcCcCCCCCCCCcC
Confidence 477777544 2234678888777653
No 215
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=20.24 E-value=1.8e+02 Score=28.17 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 003641 6 DEATRAKEISEKKFTARDFTGAKKFAVKAQNLYPG 40 (806)
Q Consensus 6 dEA~ra~eiAe~~~~~~D~~gA~r~a~kAq~L~P~ 40 (806)
|.|++.+..|..++..+|+..+...+.||+.+.-.
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~e 63 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQE 63 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999876543
No 216
>PRK11189 lipoprotein NlpI; Provisional
Probab=20.16 E-value=3.1e+02 Score=29.80 Aligned_cols=34 Identities=15% Similarity=-0.022 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHH
Q 003641 12 KEISEKKFTARDFTGAKKFAVKAQNLYPGLEGIP 45 (806)
Q Consensus 12 ~eiAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~ 45 (806)
..++.-++..|+++.|...+.+|.++.|....+-
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAY 135 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455666777777777777777777777765443
No 217
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=20.14 E-value=1.7e+02 Score=32.00 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=27.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCcHHHHHHHH
Q 003641 14 ISEKKFTARDFTGAKKFAVKAQNLYPGLEGIPQMIATL 51 (806)
Q Consensus 14 iAe~~~~~~D~~gA~r~a~kAq~L~P~le~i~q~La~~ 51 (806)
.+...+.+|||..|...+.||+++.|..-...-.+.++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 56677788888888888888888888876555555543
No 218
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=20.08 E-value=2.6e+02 Score=22.61 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHhhhhhHHHHHhhhc
Q 003641 83 KKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRR 130 (806)
Q Consensus 83 KkaYRkLal~~HPDkn~~~~A~~aFk~I~eAy~vLsD~~kR~~YD~~~ 130 (806)
.+.+|+..+.-||+. ...+..+.|.+.|..|+|.++...++...
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~a~ 55 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEKAE 55 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455677777788884 46788999999999999988777666543
Done!