Query 003643
Match_columns 805
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 17:37:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003643.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1694-1698//hhsearch_pdb/003643hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 52.1 8.5 115 510-624 865-986 (1184)
2 1i84_S Smooth muscle myosin he 1.0 1 1 46.6 11.5 11 460-470 778-788 (1184)
3 3vkg_A Dynein heavy chain, cyt 1.0 1 1 41.1 23.2 157 449-605 1887-2082(3245)
4 3vkg_A Dynein heavy chain, cyt 1.0 1 1 38.3 21.2 45 700-748 2309-2353(3245)
5 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 35.9 16.1 14 733-746 1024-1037(1080)
6 3oja_B Anopheles plasmodium-re 1.0 1 1 34.8 14.3 135 489-626 443-577 (597)
7 1c1g_A Tropomyosin; contractIl 1.0 1 1 33.7 24.3 27 713-739 225-251 (284)
8 1c1g_A Tropomyosin; contractIl 1.0 1 1 33.4 24.3 33 716-748 221-253 (284)
9 3oja_B Anopheles plasmodium-re 1.0 1 1 29.3 14.1 19 604-622 562-580 (597)
10 2v71_A Nuclear distribution pr 1.0 1 1 27.4 14.7 102 522-626 9-114 (189)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=52.13 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999875554878787764204588-------99999988787089999998656666688875
Q 003643 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-------ERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (805)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~-------ERak~LAaEVV~LEEk~l~LRS~ELKlekele 582 (805)
.+.+++..+++++.++..-...+..+..+...++....... ++...+..+...|++++-.+....-.++.++.
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~ 944 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 567888788987644788535369899999999999999998
Q 003643 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (805)
Q Consensus 583 ~l~~E~~s~~kqvsslekeR~~lqsti~ALQEEKklLqskLR 624 (805)
.+..++...+.++..+.++...+...+..+++|+..+..++.
T Consensus 945 el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~ 986 (1184)
T 1i84_S 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999989889999999999999999888888999999999999
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=46.62 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 34799999999
Q 003643 460 EDFAALEQHIE 470 (805)
Q Consensus 460 ~~faaLeqhIe 470 (805)
.-++.||...+
T Consensus 778 g~l~~LE~~r~ 788 (1184)
T 1i84_S 778 GVLAHLEEERD 788 (1184)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 18999999999
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=41.12 Aligned_cols=157 Identities=16% Similarity=0.245 Sum_probs=102.6
Q ss_pred CCCCCCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q ss_conf 0026666775034799-----99999998797999999999999999999-----------------9744577897777
Q 003643 449 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESL-----------------AAENSSLTDSYNQ 506 (805)
Q Consensus 449 ~~~~F~s~~~~~~faa-----LeqhIeDLT~EKfaLqR~L~~s~~l~EsL-----------------A~ENsaLTd~yNq 506 (805)
+.|+|.++..==+|-. |.+-.+++...+--|+.||+|=.+..+++ ..|.+++......
T Consensus 1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97536797999999999999999999999999999998899999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66799999999999999999999875554-----------------8787877642045889999998878708999999
Q 003643 507 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (805)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~le~l-----------------~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~ 569 (805)
....+++-|..++..+.+++.|..+.+.. +.+-+.|..+...|.++-+..-+++-.||+++-+
T Consensus 1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999986469998299999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 865666668887556788878898764478853536
Q 003643 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (805)
Q Consensus 570 LRS~ELKlekele~l~~E~~s~~kqvsslekeR~~l 605 (805)
|+-+-=++.+|.+.+..++..|++++..+++==+.|
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999862
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=38.32 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4678877449999998898899999999999997388897519998988
Q 003643 700 HDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 748 (805)
Q Consensus 700 ~DQlRlI~NInaLisELa~Ereel~~AL~~es~~~s~Lk~lN~ELsrKL 748 (805)
+|||--+ -|..---||+.+|.+|+.....- -.+|+++-+.|=+.|
T Consensus 2309 edQLL~~-vv~~ErPeLE~~r~~Li~~~~~~---k~~L~~LEd~lL~~L 2353 (3245)
T 3vkg_A 2309 QSQCLHE-ALKTERPDTHKKRSDLLKIQGEF---QVKLRILEKSLLNAL 2353 (3245)
T ss_dssp HHHHHHH-HHHHHCHHHHHHHHHHHHTTHHH---HHHHHTTTHHHHHHH
T ss_pred HHHHHHH-HHHHHCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 9999999-99775802999999999999999---999999999999999
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=35.86 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 73888975199989
Q 003643 733 QSSKLKDLNNELSR 746 (805)
Q Consensus 733 ~~s~Lk~lN~ELsr 746 (805)
.++.|..+|..|++
T Consensus 1024 kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=34.78 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974457789777766799999999999999999999875554878787764204588999999887870899999
Q 003643 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (805)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l 568 (805)
+....+..++.+....++....+..|+.+..+.++.++.+...++..+.++... ...-.+....+..++-.++++.-
T Consensus 443 ~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 519 (597)
T 3oja_B 443 QGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLP---KDGLARSSDNLNKVFTHLKERQA 519 (597)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 751015774999888988999999999999889999999999865555402766---11247878889999999886432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9865666668887556788878898764478853536989999999999999999864
Q 003643 569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (805)
Q Consensus 569 ~LRS~ELKlekele~l~~E~~s~~kqvsslekeR~~lqsti~ALQEEKklLqskLRka 626 (805)
.+-....+.+++.+....+....++++..+++.-.+.+..+..+++|--.+-.++.+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3678888887765542011136776648899987310147899888899999999999
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=33.72 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998898899999999999997388897
Q 003643 713 ISELALEKEELVQALSSELAQSSKLKD 739 (805)
Q Consensus 713 isELa~Ereel~~AL~~es~~~s~Lk~ 739 (805)
+.++..+...+...+.........+..
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEK 251 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998889899889999988999999
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=33.37 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 898899999999999997388897519998988
Q 003643 716 LALEKEELVQALSSELAQSSKLKDLNNELSRKL 748 (805)
Q Consensus 716 La~Ereel~~AL~~es~~~s~Lk~lN~ELsrKL 748 (805)
+..+...+...+.........+...-.++..++
T Consensus 221 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (284)
T 1c1g_A 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999888989988999998899999999
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=1.00 E-value=1 Score=29.32 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3698999999999999999
Q 003643 604 DFQSTIEALQEEKKMMQSK 622 (805)
Q Consensus 604 ~lqsti~ALQEEKklLqsk 622 (805)
.+.-.+..+..|.|-|+.+
T Consensus 562 ~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9888899999999999987
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=27.45 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999875554878787764204588999999887870899999986566666888755678887889876447885
Q 003643 522 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 601 (805)
Q Consensus 522 q~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LAaEVV~LEEk~l~LRS~ELKlekele~l~~E~~s~~kqvssleke 601 (805)
+.+|.-+......+..+++.++.+.++-.+.+|-|.+| ||..+-++-...=.++..+..+..|+.+++.|+.....+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E---LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE---LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999989999999---999999999889999999998999999999999999888
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----3536989999999999999999864
Q 003643 602 ----RQDFQSTIEALQEEKKMMQSKLRKA 626 (805)
Q Consensus 602 ----R~~lqsti~ALQEEKklLqskLRka 626 (805)
-..|+..|..|++++.-|+.+||..
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
Done!