Query 003643
Match_columns 805
No_of_seqs 24 out of 26
Neff 2.6
Searched_HMMs 13730
Date Tue Mar 26 17:41:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003643.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1694-1698//hhsearch_scop/003643hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 39.7 7.5 0.00054 14.2 19.9 58 500-557 93-150 (279)
2 d2efla1 a.238.1.4 (A:1-288) Fo 20.0 16 0.0012 12.0 19.9 42 512-553 114-155 (288)
3 d1gg2g_ a.137.3.1 (G:) Transdu 17.9 18 0.0013 11.7 1.3 30 511-540 2-31 (54)
4 d1tbge_ a.137.3.1 (E:) Transdu 6.5 50 0.0037 8.8 1.0 27 512-538 13-39 (68)
5 d1seta1 a.2.7.1 (A:1-110) Sery 6.1 55 0.004 8.5 5.7 19 521-539 33-51 (110)
6 d1fyja_ a.16.1.3 (A:) Multifun 4.3 85 0.0062 7.3 4.0 42 499-541 4-45 (57)
7 d2igsa1 d.2.1.11 (A:4-215) Hyp 4.1 91 0.0066 7.1 1.8 23 549-573 57-79 (212)
8 d1m47a_ a.26.1.2 (A:) Interleu 3.7 1E+02 0.0073 6.8 0.0 24 450-473 36-59 (128)
9 d1wu9a1 a.245.1.1 (A:191-249) 3.1 1.3E+02 0.0091 6.2 4.8 33 594-626 2-34 (59)
10 d1vkoa1 c.2.1.3 (A:11-314,A:42 3.0 1.3E+02 0.0095 6.0 0.9 29 6-34 192-220 (397)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.72 E-value=7.5 Score=14.23 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7897777667999999999999999999998755548787877642045889999998
Q 003643 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (805)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERak~LA 557 (805)
|..-..++......+..++.+++.++.-....++-.+..|+.+..+...+......+.
T Consensus 93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~ 150 (279)
T d2efka1 93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLD 150 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999999888875
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=16 Score=12.00 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999875554878787764204588999
Q 003643 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (805)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aErdaArle~~aA~ERa 553 (805)
..+..++.+++.++.-..-.+...+..|..+..+...+....
T Consensus 114 K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~ 155 (288)
T d2efla1 114 KSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF 155 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999987
No 3
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.89 E-value=18 Score=11.69 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999987555487878
Q 003643 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (805)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~le~l~aErd 540 (805)
+.++++.+|+|+.|+...+..+....++.-
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~ 31 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLM 31 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 899999999999996874204999999999
No 4
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.52 E-value=50 Score=8.78 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999875554878
Q 003643 512 NQLKSEMEKLQEEIKVQLVELESFRNE 538 (805)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~le~l~aE 538 (805)
.+++..+|||+.|....+..+....+|
T Consensus 13 ~~lk~~VeQLr~Ea~i~R~~VS~aa~d 39 (68)
T d1tbge_ 13 DKLKMEVDQLKKEVTLERMLVSKCCEE 39 (68)
T ss_dssp HHHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999966740259989999
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=6.12 E-value=55 Score=8.54 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998755548787
Q 003643 521 LQEEIKVQLVELESFRNEY 539 (805)
Q Consensus 521 Lq~Ei~aQ~~~le~l~aEr 539 (805)
|.++...-...++.++++|
T Consensus 33 ld~~rr~l~~~~e~l~~~r 51 (110)
T d1seta1 33 LDREVQELKKRLQEVQTER 51 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 6
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.28 E-value=85 Score=7.26 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789777766799999999999999999999875554878787
Q 003643 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (805)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le~l~aErda 541 (805)
+|.+..++||..|-.||..-.- ..+|++.--.|-.++.+|..
T Consensus 4 ~L~~~V~~QGd~VR~LK~~ka~-k~~i~~aV~~LL~LK~~yk~ 45 (57)
T d1fyja_ 4 VLYNRVAVQGDVVRELKAKKAP-KEDVDAAVKQLLSLKAEYKE 45 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999989999998804899-89999999999999999998
No 7
>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.08 E-value=91 Score=7.09 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999988787089999998656
Q 003643 549 ADERAKILASEVIGLEEKALRLRSN 573 (805)
Q Consensus 549 A~ERak~LAaEVV~LEEk~l~LRS~ 573 (805)
-.|-+-.||+|...- -.++||+-
T Consensus 57 d~~y~t~la~e~a~~--i~~~~~m~ 79 (212)
T d2igsa1 57 DQQYSTLLAQEIANG--VTIGFRMV 79 (212)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--EEEEEHHH
T ss_conf 788889999986220--46510012
No 8
>d1m47a_ a.26.1.2 (A:) Interleukin-2 (IL-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=1e+02 Score=6.79 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=18.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 026666775034799999999987
Q 003643 450 QHGFYSTKHNEDFAALEQHIEDLT 473 (805)
Q Consensus 450 ~~~F~s~~~~~~faaLeqhIeDLT 473 (805)
.+.||.+++.-++.-||-..|||-
T Consensus 36 tFKFymPKkaTELkHLQCL~eELk 59 (128)
T d1m47a_ 36 TFKFYMPKKATELKHLQCLEEELK 59 (128)
T ss_dssp TSCBCCBSCCCSGGGGHHHHTTHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 021037740447689999999987
No 9
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=1.3e+02 Score=6.16 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 764478853536989999999999999999864
Q 003643 594 KISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (805)
Q Consensus 594 qvsslekeR~~lqsti~ALQEEKklLqskLRka 626 (805)
++..+..+-.+|..+++.|.-|+---..|||.+
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~KLRdI 34 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGKLRNI 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999999999999999998999999999
No 10
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.03 E-value=1.3e+02 Score=6.04 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56761135767975567999997999999
Q 003643 6 VLPTSRKQEHLEAGKRKLEEFRKKKAAER 34 (805)
Q Consensus 6 vl~~srkqe~~eagkr~leefrkkkaa~r 34 (805)
|++..-|.|++|+=+.-+.+|+++...||
T Consensus 192 v~~g~~k~e~ve~Ir~DIr~Fk~~~~ldr 220 (397)
T d1vkoa1 192 VIPGDNKLEHLEHIRADIRKFKQEHELEC 220 (397)
T ss_dssp BCCSSCHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 13588899999999999999999749976
Done!