Query 003644
Match_columns 805
No_of_seqs 573 out of 3256
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:53:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003644.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1694-1698//hhsearch_pdb/003644hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rio_A Serine/threonine-protei 1.0 1 1 550.3 25.8 398 372-802 11-434 (434)
2 3p23_A Serine/threonine-protei 1.0 1 1 546.0 24.4 386 376-803 24-419 (432)
3 4b9d_A Serine/threonine-protei 1.0 1 1 404.6 19.7 252 376-671 24-283 (350)
4 4fie_A Serine/threonine-protei 1.0 1 1 402.7 26.1 251 375-672 150-408 (423)
5 4fih_A Serine/threonine-protei 1.0 1 1 401.9 25.7 250 376-672 74-331 (346)
6 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 401.1 24.0 255 376-674 32-300 (311)
7 3hyh_A Carbon catabolite-derep 1.0 1 1 397.5 22.1 251 371-670 9-268 (275)
8 3ubd_A Ribosomal protein S6 ki 1.0 1 1 395.3 19.0 253 376-674 24-291 (304)
9 3v5w_A G-protein coupled recep 1.0 1 1 394.3 23.9 254 375-675 188-460 (689)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 391.6 19.7 252 375-670 57-328 (336)
No 1
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=1.00 E-value=1 Score=550.27 Aligned_cols=398 Identities=41% Similarity=0.770 Sum_probs=328.5
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCC
Q ss_conf 32252299957645479639999875379599999930388069999999999917999754623534687517883033
Q 003644 372 RRIGKLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER 451 (805)
Q Consensus 372 ~~i~~~~~~~~~LG~GsfG~Vy~a~~~~g~~VAVK~l~~~~~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~E~ 451 (805)
..+.+.|...+.||+|+||+||+++..+|+.||||++.....+...+|+..+....+|||||++++++.+.+..|+|||+
T Consensus 11 ~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~ 90 (434)
T 2rio_A 11 QSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALEL 90 (434)
T ss_dssp CSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred HHHHHEEECCCEEEECCCEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEEC
T ss_conf 23200465167476678859999788899689999986777778999999999615999758188899608769999746
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 46883458998328878997663204403588876513443321347877517999999999999999987885643613
Q 003644 452 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIGLI 531 (805)
Q Consensus 452 c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~Iv 531 (805)
|.++|.+++......... ....++..++.++.||+.||+|||+.+|+
T Consensus 91 ~~gsL~~~l~~~~~~~~~---------------------------------~~~~~~~~~~~i~~qi~~aL~~LH~~~iv 137 (434)
T 2rio_A 91 CNLNLQDLVESKNVSDEN---------------------------------LKLQKEYNPISLLRQIASGVAHLHSLKII 137 (434)
T ss_dssp CSEEHHHHHHTC---------------------------------------------CCHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCCCHHHHHHCCCCCCHH---------------------------------HHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 789899999636777123---------------------------------32023001999999999999999979844
Q ss_pred CCCCCCCEEEECCC-----------CCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHC-------CCCC
Q ss_conf 04788820786689-----------99228990268610025887654-24644667989897355310-------9999
Q 003644 532 HRDLKPQNVLISKD-----------KSFCAKLSDMGISKRLQGDMSCL-TQNATGYGSSGWQAPEQLLQ-------GRQT 592 (805)
Q Consensus 532 HrDLKp~NILl~~~-----------~~~~~kl~DFGla~~~~~~~~~~-~~~~~~~gt~~y~APE~l~~-------~~~t 592 (805)
||||||+|||++.+ ....+||+|||+++......... .......||+.|+|||++.+ ..++
T Consensus 138 HrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~ 217 (434)
T 2rio_A 138 HRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLT 217 (434)
T ss_dssp CCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCC
T ss_pred CCCCCHHHEEEECCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf 26787576898468655443346777517997535654023888762213414889887730888854555666566766
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC------CCCHHHHHHHHHHCCCCCCCCCCHHHHHCCC
Q ss_conf 7414888999999999299999998657788898411332123------6995799999971599999999955554096
Q 003644 593 RAIDLFSLGCILFFCITGGKHPYGESFERDANIVKDRKDLFLV------EHIPEAVDLFTRLLDPNPDLRPKAQNVLNHP 666 (805)
Q Consensus 593 ~~sDvwSlGvil~elltG~~~Pf~~~~~~~~~~~~~~~~~~~~------~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HP 666 (805)
.++|||||||++|||++++.+||.........+.......... ..++++.++|.+||+.||.+||++.++++||
T Consensus 218 ~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp 297 (434)
T 2rio_A 218 RSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHP 297 (434)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHHHHHCC
T ss_conf 04545747989999971798998873032788862777842001346430219999999997328943487999998498
Q ss_pred CCCCCCCCHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 665631001244310320000124423799999987777-7408963388749988643210146787778999998602
Q 003644 667 FFWTADTRLSFLRDVSDRVELEDRESDSKLLRALEGIAL-VALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNK 745 (805)
Q Consensus 667 ff~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~le~~~~-~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~rdllr~irn~ 745 (805)
|||...+++.++.+++++.+.+.+...+.++..++.... ....++|..+++..++++++++|+|++++++||||+|||+
T Consensus 298 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~dllr~~rn~ 377 (434)
T 2rio_A 298 LFWPKSKKLEFLLKVSDRLEIENRDPPSALLMKFDAGSDFVIPSGDWTVKFDKTFMDNLERYRKYHSSKLMDLLRALRNK 377 (434)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSCBTTBCHHHHHHHTTHHHHSCSSCGGGGSCSTTCC-----CCCCSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHCH
T ss_conf 63794788999999788875145689668999988278704327886575699998642271465831098999999740
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCC
Q ss_conf 266656974678530799865335322358962899999999661122022001256
Q 003644 746 SNHFRELPQDIQELLGSHPEGFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYVTN 802 (805)
Q Consensus 746 ~~h~~el~~~~~el~g~~p~~f~~yf~~~fp~ll~~~y~~~~~~~~~~~~~~~y~~~ 802 (805)
.|||+|+|+++++++|++|+||..||+++||.||+|+|.+++++|++|+.|++||..
T Consensus 378 ~~h~~~~~~~~~~~~~~~~~~~~~y~~~~fp~l~~~~y~~~~~~~~~~~~~~~~~~~ 434 (434)
T 2rio_A 378 YHHFMDLPEDIAELMGPVPDGFYDYFTKRFPNLLIGVYMIVKENLSDDQILREFLYS 434 (434)
T ss_dssp HHTGGGSCHHHHHHTCSTTHHHHHHHHHHCTTHHHHHHHHHHHHCTTCTTTHHHHHC
T ss_pred HHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 344666489999984899348999998766379999999998652577688886139
No 2
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=545.98 Aligned_cols=386 Identities=35% Similarity=0.687 Sum_probs=320.3
Q ss_pred CEEEEEEEECCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCCCCC
Q ss_conf 22999576454796399998753795999999303880699999999999179997546235346875178830334688
Q 003644 376 KLVVFNKEIAKGSNGTVVLEGNYEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCTCS 455 (805)
Q Consensus 376 ~~~~~~~~LG~GsfG~Vy~a~~~~g~~VAVK~l~~~~~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~E~c~~s 455 (805)
..|...+.||+|+||+||..+..+++.||||++.........+|+..+....+|||||++++++.+.+..|+|||+|.++
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~g~ 103 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAAT 103 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCSEE
T ss_pred EEEECCCEEECCCCEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCC
T ss_conf 78732786602868799998984893799999887777899999999985457979675999984199899998778897
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCC
Q ss_conf 34589983288789976632044035888765134433213478775179999999999999999878856436130478
Q 003644 456 LNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIGLIHRDL 535 (805)
Q Consensus 456 L~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~IvHrDL 535 (805)
|.+++..... .+++..++.++.||+.||+|||+.+|+||||
T Consensus 104 L~~~l~~~~~---------------------------------------~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDl 144 (432)
T 3p23_A 104 LQEYVEQKDF---------------------------------------AHLGLEPITLLQQTTSGLAHLHSLNIVHRDL 144 (432)
T ss_dssp HHHHHHSSSC---------------------------------------CCCSSCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHCCC---------------------------------------CCCCHHHHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 9999971687---------------------------------------7543229999999999999999896770789
Q ss_pred CCCEEEECC---CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 882078668---9992289902686100258876542464466798989735531---0999974148889999999992
Q 003644 536 KPQNVLISK---DKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLL---QGRQTRAIDLFSLGCILFFCIT 609 (805)
Q Consensus 536 Kp~NILl~~---~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~---~~~~t~~sDvwSlGvil~ellt 609 (805)
||+|||++. ++.+.+||+|||+++................||+.|+|||++. ...++.++|||||||++|||++
T Consensus 145 Kp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt 224 (432)
T 3p23_A 145 KPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVIS 224 (432)
T ss_dssp STTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHT
T ss_pred CHHHEEEECCCCCCCEEEEEECCCCEEECCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 88998982577788614898325643331578765011146678868658666503446688728889999999999980
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCC----CCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 9999999865778889841133212----369957999999715999999999555540966656310012443103200
Q 003644 610 GGKHPYGESFERDANIVKDRKDLFL----VEHIPEAVDLFTRLLDPNPDLRPKAQNVLNHPFFWTADTRLSFLRDVSDRV 685 (805)
Q Consensus 610 G~~~Pf~~~~~~~~~~~~~~~~~~~----~~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HPff~~~~~~~~~l~~~~~~~ 685 (805)
++.+||+.................. ....+.+.+||.+||+.||.+||+++++++|||||+.+++..++++++++.
T Consensus 225 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~~~~~~~~~~~~~~~ 304 (432)
T 3p23_A 225 EGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSLEKQLQFFQDVSDRI 304 (432)
T ss_dssp TSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999422367788898456873224755333099999999987589755879999984942038688998899999986
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 00124423799999987777740896338874998864321014678777899999860226665697467853079986
Q 003644 686 ELEDRESDSKLLRALEGIALVALNGKWDEKMETKFIENIGRYRRYKYDNVRDLLRVIRNKSNHFRELPQDIQELLGSHPE 765 (805)
Q Consensus 686 e~~~~~~~~~~~~~le~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~rdllr~irn~~~h~~el~~~~~el~g~~p~ 765 (805)
+.+. ...++.+.++.....+...+|++.++..+..+++++|+|++++++||+|+|||++|||+|+|+++++.+|+.|+
T Consensus 305 ~~~~--~~~~~~~~l~~~~~~~~~~~w~~~i~~~~~~~l~~~~~~~~~~~~dllr~~rn~~~h~~~~~~~~~~~~g~~p~ 382 (432)
T 3p23_A 305 EKES--LDGPIVKQLERGGRAVVKMDWRENITVPLQTDLRKFRTYKGGSVRDLLRAMRNKKHHYRELPAEVRETLGTLPD 382 (432)
T ss_dssp SCSC--SSCHHHHHHHHTCSTTTTSCGGGSSCHHHHHHTSSCCSCCSSCHHHHHHHHHHHHHTTTTSCHHHHHHHCSTTH
T ss_pred HCCC--CCCHHHHHHHHCCCCCCCCCHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHCHHHCCHHHHHHHCCCCH
T ss_conf 4055--55668899987166101075877559998874667367682389999999967400365529999986089952
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 53353223589628999999996611220220012568
Q 003644 766 GFYNYFSCRFPKLLIEVYNVIFTYCKGEEVFHKYVTND 803 (805)
Q Consensus 766 ~f~~yf~~~fp~ll~~~y~~~~~~~~~~~~~~~y~~~~ 803 (805)
||..||+++||+||||+|+++. .|+.|++|++||..+
T Consensus 383 ~~~~y~~~~fp~l~~~~y~~~~-~~~~~~~~~~~~~~~ 419 (432)
T 3p23_A 383 DFVCYFTSRFPHLLAHTYRAME-LCSHERLFQPYYFHE 419 (432)
T ss_dssp HHHHHHHSSCTTHHHHHHHHGG-GGSSSGGGTTTCCC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHH-HCCCCHHHHHHCCCC
T ss_conf 8999987657189999999999-768865665226899
No 3
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=404.63 Aligned_cols=252 Identities=24% Similarity=0.424 Sum_probs=203.1
Q ss_pred CEEEEEEEECCCCCEEEEEEE-EECCCEEEEEEEECCCC-----HHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEC
Q ss_conf 229995764547963999987-53795999999303880-----699999999999179997546235346875178830
Q 003644 376 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTHH-----DVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSL 449 (805)
Q Consensus 376 ~~~~~~~~LG~GsfG~Vy~a~-~~~g~~VAVK~l~~~~~-----~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~ 449 (805)
++|.+.+.||+|+||+||++. ..+|+.||||++.+... +...+|+. +++.++|||||++++++.+++.+||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~-il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVA-VLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHH-HHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHH-HHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 2558847970277939999998899989999998658789799999999999-998779989891999999899999999
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 33468834589983288789976632044035888765134433213478775179999999999999999878856436
Q 003644 450 ERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIG 529 (805)
Q Consensus 450 E~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~ 529 (805)
|||. +|+|.++|... +...+++..++.|+.||+.||+|||+.+
T Consensus 103 Ey~~----------gg~L~~~i~~~---------------------------~~~~~~e~~~~~~~~qi~~aL~ylH~~~ 145 (350)
T 4b9d_A 103 DYCE----------GGDLFKRINAQ---------------------------KGVLFQEDQILDWFVQICLALKHVHDRK 145 (350)
T ss_dssp ECCT----------TCBHHHHHHHT---------------------------TTCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCC----------CCCHHHHHHHC---------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4889----------98399999973---------------------------8999978999999999999999999899
Q ss_pred EECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 13047888207866899922899026861002588765424644667989897355310999974148889999999992
Q 003644 530 LIHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFFCIT 609 (805)
Q Consensus 530 IvHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~ellt 609 (805)
|+||||||+|||++.++. +||+|||+|+.+.... ....+.+||+.|||||++.+..|+.++|||||||++|||++
T Consensus 146 IiHRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~---~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemlt 220 (350)
T 4b9d_A 146 ILHRDIKSQNIFLTKDGT--VQLGDFGIARVLNSTV---ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCT 220 (350)
T ss_dssp CEETTCCGGGEEECTTCC--EEECSTTEESCCCHHH---HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHEEECCCCC--EEECCCCCCEEECCCC---CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 151359789979878999--8976465214406885---41014578836039999879998959999999999999997
Q ss_pred CCCCCCCCCHHHH--HHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 9999999865778--8898411332123699579999997159999999995555409666563
Q 003644 610 GGKHPYGESFERD--ANIVKDRKDLFLVEHIPEAVDLFTRLLDPNPDLRPKAQNVLNHPFFWTA 671 (805)
Q Consensus 610 G~~~Pf~~~~~~~--~~~~~~~~~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HPff~~~ 671 (805)
| .+||....... ..+........+...++++.+||.+||+.||++|||++|+++||||...
T Consensus 221 G-~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 283 (350)
T 4b9d_A 221 L-KHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283 (350)
T ss_dssp S-SCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred C-CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHHCC
T ss_conf 8-79989969999999998089999975579999999999855896679089999639976167
No 4
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=402.74 Aligned_cols=251 Identities=25% Similarity=0.421 Sum_probs=203.0
Q ss_pred CCEEEEEEEECCCCCEEEEEEEE-ECCCEEEEEEEECCC---CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECC
Q ss_conf 52299957645479639999875-379599999930388---06999999999991799975462353468751788303
Q 003644 375 GKLVVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLE 450 (805)
Q Consensus 375 ~~~~~~~~~LG~GsfG~Vy~a~~-~~g~~VAVK~l~~~~---~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~E 450 (805)
.+.|.+.++||+|+||+||+|.. .+|+.||||++.... .+...+|+. ++..++|||||++++++.+.+.+|||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~-il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVV-IMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHH-HHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHH-HHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 684386169624818489999999999899999986255468999999999-9985799898716899998999999996
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 34688345899832887899766320440358887651344332134787751799999999999999998788564361
Q 003644 451 RCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIGL 530 (805)
Q Consensus 451 ~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~I 530 (805)
||. +|+|.+++. ...+++..+..|+.||+.||+|||+++|
T Consensus 229 y~~----------gG~L~~~i~------------------------------~~~l~e~~~~~~~~qil~aL~ylH~~~I 268 (423)
T 4fie_A 229 FLE----------GGALTDIVT------------------------------HTRMNEEQIAAVCLAVLQALSVLHAQGV 268 (423)
T ss_dssp CCT----------TEEHHHHHH------------------------------HSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred CCC----------CCCHHHHHH------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 989----------982898876------------------------------1698999999999999999999998890
Q ss_pred ECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 30478882078668999228990268610025887654246446679898973553109999741488899999999929
Q 003644 531 IHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFFCITG 610 (805)
Q Consensus 531 vHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~elltG 610 (805)
+||||||+|||++.++. +||+|||+|+.+.... ....+.+||+.|||||++.+..|+.++|||||||++|||++|
T Consensus 269 iHRDiKp~NILl~~~g~--vKl~DFGla~~~~~~~---~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G 343 (423)
T 4fie_A 269 IHRDIKSDSILLTHDGR--VKLSDFGFCAQVSKEV---PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDG 343 (423)
T ss_dssp ECCCCSTTTEEECTTCC--EEECCCTTCEECCSSC---CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred ECCCCCHHHEEECCCCC--EEEECCCCCEECCCCC---CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 44657877789858999--8980372654777887---643466647472799997799999689999999999999978
Q ss_pred CCCCCCCCHH-HHHHHHHHCC---CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 9999998657-7888984113---321236995799999971599999999955554096665631
Q 003644 611 GKHPYGESFE-RDANIVKDRK---DLFLVEHIPEAVDLFTRLLDPNPDLRPKAQNVLNHPFFWTAD 672 (805)
Q Consensus 611 ~~~Pf~~~~~-~~~~~~~~~~---~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HPff~~~~ 672 (805)
.+||..... .....+.... .......++++++||.+||+.||++|||++|+|+||||....
T Consensus 344 -~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~ 408 (423)
T 4fie_A 344 -EPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 408 (423)
T ss_dssp -SCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred -CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf -79989869999999997279988765012999999999998678956890999996098756899
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=401.94 Aligned_cols=250 Identities=26% Similarity=0.426 Sum_probs=202.0
Q ss_pred CEEEEEEEECCCCCEEEEEEEE-ECCCEEEEEEEECCC---CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCC
Q ss_conf 2299957645479639999875-379599999930388---069999999999917999754623534687517883033
Q 003644 376 KLVVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKTH---HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLER 451 (805)
Q Consensus 376 ~~~~~~~~LG~GsfG~Vy~a~~-~~g~~VAVK~l~~~~---~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~E~ 451 (805)
+.|...++||+|+||+||+|.. .+|+.||||++.... .+...+|+. ++..++|||||++++++.+++.+||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~-il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVV-IMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHH-HHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHH-HHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 75387079602728299999998999899999985276568999999999-99867998999199999989999999969
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 46883458998328878997663204403588876513443321347877517999999999999999987885643613
Q 003644 452 CTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIGLI 531 (805)
Q Consensus 452 c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~Iv 531 (805)
|. +|+|.+++. ...+++..+..|+.||+.||+|||+++|+
T Consensus 153 ~~----------gg~L~~~l~------------------------------~~~l~e~~~~~~~~qi~~aL~ylH~~~Ii 192 (346)
T 4fih_A 153 LE----------GGALTDIVT------------------------------HTRMNEEQIAAVCLAVLQALSVLHAQGVI 192 (346)
T ss_dssp CT----------TEEHHHHHH------------------------------HSCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred CC----------CCCHHHHHH------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89----------980899987------------------------------18989999999999999999999988835
Q ss_pred CCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 04788820786689992289902686100258876542464466798989735531099997414888999999999299
Q 003644 532 HRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFFCITGG 611 (805)
Q Consensus 532 HrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~elltG~ 611 (805)
||||||+|||++.++. +||+|||+|+.+.... ....+.+||+.|||||++.+..|+.++|||||||++|||++|
T Consensus 193 HRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~---~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G- 266 (346)
T 4fih_A 193 HRDIKSDSILLTHDGR--VKLSDFGFCAQVSKEV---PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDG- 266 (346)
T ss_dssp CCCCSGGGEEECTTCC--EEECCCTTCEECCSSS---CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS-
T ss_pred CCCCCHHHEEECCCCC--EEEECCCCCEECCCCC---CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC-
T ss_conf 5627889978879998--8990275753667887---753465627582799997799999689999999999999978-
Q ss_pred CCCCCCCHH-HHHHHHHHC-C--CCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCC
Q ss_conf 999998657-788898411-3--321236995799999971599999999955554096665631
Q 003644 612 KHPYGESFE-RDANIVKDR-K--DLFLVEHIPEAVDLFTRLLDPNPDLRPKAQNVLNHPFFWTAD 672 (805)
Q Consensus 612 ~~Pf~~~~~-~~~~~~~~~-~--~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HPff~~~~ 672 (805)
.+||..... .....+... . .......++++++||.+||+.||++|||++|+++||||....
T Consensus 267 ~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~ 331 (346)
T 4fih_A 267 EPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 331 (346)
T ss_dssp SCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 79989859999999997179998875022999999999998679956890999996098656899
No 6
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=401.10 Aligned_cols=255 Identities=27% Similarity=0.401 Sum_probs=207.3
Q ss_pred CEEEEEEEECCCCCEEEEEEE-EECCCEEEEEEEECC------CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEE
Q ss_conf 229995764547963999987-537959999993038------8069999999999917999754623534687517883
Q 003644 376 KLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKT------HHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLS 448 (805)
Q Consensus 376 ~~~~~~~~LG~GsfG~Vy~a~-~~~g~~VAVK~l~~~------~~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV 448 (805)
++|.+.+.||+|+||+||++. ..+|+.||||++.+. ......+|+. ++..++|||||++++++.+++.+|+|
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERD-VMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHH-HHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHH-HHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999-99867998989199999738989999
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 03346883458998328878997663204403588876513443321347877517999999999999999987885643
Q 003644 449 LERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEI 528 (805)
Q Consensus 449 ~E~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~ 528 (805)
||||. +|+|.+++. +.+.+++..+..++.||+.||+|||++
T Consensus 111 mEy~~----------gG~L~~~i~-----------------------------~~~~l~e~~~~~~~~qi~~al~ylH~~ 151 (311)
T 4aw0_A 111 LSYAK----------NGELLKYIR-----------------------------KIGSFDETCTRFYTAEIVSALEYLHGK 151 (311)
T ss_dssp ECCCT----------TEEHHHHHH-----------------------------HHSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCC----------CCCHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96489----------989999998-----------------------------749999999999999999999999988
Q ss_pred CEECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 61304788820786689992289902686100258876542464466798989735531099997414888999999999
Q 003644 529 GLIHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFFCI 608 (805)
Q Consensus 529 ~IvHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~ell 608 (805)
+|+||||||+|||++.++. +||+|||+|+.+..... .....+.+||+.|||||++.+..|+.++||||+||++|||+
T Consensus 152 ~IiHRDlKPeNILl~~~g~--vKl~DFGla~~~~~~~~-~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml 228 (311)
T 4aw0_A 152 GIIHRDLKPENILLNEDMH--IQITDFGTAKVLSPESK-QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLV 228 (311)
T ss_dssp TEECSCCSGGGEEECTTSC--EEECCCTTCEECCTTTT-CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHEEECCCCC--EEEEECCCCEECCCCCC-CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7826878789969858988--89987687502577877-65436755680307998976899996898998999999997
Q ss_pred HCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH------HHCCCCCCCCCCC
Q ss_conf 29999999865-778889841133212369957999999715999999999555------5409666563100
Q 003644 609 TGGKHPYGESF-ERDANIVKDRKDLFLVEHIPEAVDLFTRLLDPNPDLRPKAQN------VLNHPFFWTADTR 674 (805)
Q Consensus 609 tG~~~Pf~~~~-~~~~~~~~~~~~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~e------iL~HPff~~~~~~ 674 (805)
+| .+||.... ......+......++...++++++||.+||+.||++|||++| +++||||.+.++.
T Consensus 229 ~G-~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~ 300 (311)
T 4aw0_A 229 AG-LPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE 300 (311)
T ss_dssp HS-SCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCT
T ss_pred HC-CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCCCCHH
T ss_conf 49-8998997999999999719999996569999999999762897578096797587798779875898989
No 7
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=397.48 Aligned_cols=251 Identities=25% Similarity=0.367 Sum_probs=205.7
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEEE-EECCCEEEEEEEECCC------CHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 53225229995764547963999987-5379599999930388------0699999999999179997546235346875
Q 003644 371 GRRIGKLVVFNKEIAKGSNGTVVLEG-NYEGRSVAVKRLVKTH------HDVALKEIQNLIASDQHPNIVRWYGVESDQD 443 (805)
Q Consensus 371 ~~~i~~~~~~~~~LG~GsfG~Vy~a~-~~~g~~VAVK~l~~~~------~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~ 443 (805)
+.+++ +|.+.+.||+|+||+||++. ..+|+.||||++.+.. .....+|+. +++.++|||||++++++.+.+
T Consensus 9 G~~ig-~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~-il~~l~HpnIv~~~~~~~~~~ 86 (275)
T 3hyh_A 9 GAHIG-NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREIS-YLRLLRHPHIIKLYDVIKSKD 86 (275)
T ss_dssp ------CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHH-HHHHCCCTTBCCEEEEEECSS
T ss_pred CCEEE-CEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHH-HHHHCCCCCCCEEEEEEEECC
T ss_conf 98933-8689999821768199999999999899999983788678789999999999-998779989992999999899
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 17883033468834589983288789976632044035888765134433213478775179999999999999999878
Q 003644 444 FVYLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLS 523 (805)
Q Consensus 444 ~~~LV~E~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~ 523 (805)
.+|+|||||+++|.+++. +...+++..+..++.||+.||+
T Consensus 87 ~~~ivmEy~~g~L~~~l~----------------------------------------~~~~l~e~~~~~~~~qi~~al~ 126 (275)
T 3hyh_A 87 EIIMVIEYAGNELFDYIV----------------------------------------QRDKMSEQEARRFFQQIISAVE 126 (275)
T ss_dssp EEEEEEECCCEEHHHHHH----------------------------------------HSCSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHH----------------------------------------HCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899999278997899998----------------------------------------7499999999999999999999
Q ss_pred HHHHCCEECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCHHHHHHH
Q ss_conf 85643613047888207866899922899026861002588765424644667989897355310999-97414888999
Q 003644 524 HLHEIGLIHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQ-TRAIDLFSLGC 602 (805)
Q Consensus 524 yLH~~~IvHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~-t~~sDvwSlGv 602 (805)
|||+++|+||||||+|||++.++. +||+|||+|+..... ....+.+||+.|||||++.+..+ +.++||||+||
T Consensus 127 ylH~~~IiHRDiKP~NILl~~~~~--vkl~DFGla~~~~~~----~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGv 200 (275)
T 3hyh_A 127 YCHRHKIVHRDLKPENLLLDEHLN--VKIADFGLSNIMTDG----NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGV 200 (275)
T ss_dssp HHHHTTCCCCCCCTTTEEECTTCC--EEECCSSCC-------------------CTTSCHHHHSSSSCCCTHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHEEECCCCC--EEEEECCCCEECCCC----CCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 999889306668758768879998--999454777266788----74677028935277455068988898365687899
Q ss_pred HHHHHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 999999299999998657-78889841133212369957999999715999999999555540966656
Q 003644 603 ILFFCITGGKHPYGESFE-RDANIVKDRKDLFLVEHIPEAVDLFTRLLDPNPDLRPKAQNVLNHPFFWT 670 (805)
Q Consensus 603 il~elltG~~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~eiL~HPff~~ 670 (805)
++|+|++| .+||..... .....+......++...++++++||.+||+.||++|||++|+++||||+.
T Consensus 201 ily~lltg-~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~ 268 (275)
T 3hyh_A 201 ILYVMLCR-RLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV 268 (275)
T ss_dssp HHHHHHHS-SCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred HHHHHHHC-CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf 99999988-799899899999999974999998779999999999986589668919999971920065
No 8
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=395.34 Aligned_cols=253 Identities=26% Similarity=0.351 Sum_probs=204.9
Q ss_pred CEEEEEEEECCCCCEEEEEEEE----ECCCEEEEEEEECCC-----CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEE
Q ss_conf 2299957645479639999875----379599999930388-----0699999999999179997546235346875178
Q 003644 376 KLVVFNKEIAKGSNGTVVLEGN----YEGRSVAVKRLVKTH-----HDVALKEIQNLIASDQHPNIVRWYGVESDQDFVY 446 (805)
Q Consensus 376 ~~~~~~~~LG~GsfG~Vy~a~~----~~g~~VAVK~l~~~~-----~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~ 446 (805)
.+|.+.+.||+|+||+||++.. .+++.||||++.+.. .....+|+. ++..++|||||++++++.+++.+|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~-il~~l~HpnIv~l~~~~~~~~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERD-ILVEVNHPFIVKLHYAFQTEGKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------C-CCCCCCCTTEECEEEEEEETTEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHH-HHHHCCCCCCCEEEEEEEECCEEE
T ss_conf 5658988972188839999998558878979999998157768478999999999-998779979990999999899999
Q ss_pred EECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 83033468834589983288789976632044035888765134433213478775179999999999999999878856
Q 003644 447 LSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLH 526 (805)
Q Consensus 447 LV~E~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH 526 (805)
+|||||. +|+|.+++. +...+++..+..++.|++.||+|||
T Consensus 103 ivmEy~~----------gg~L~~~l~-----------------------------~~~~l~e~~~~~~~~qi~~aL~ylH 143 (304)
T 3ubd_A 103 LILDFLR----------GGDLFTRLS-----------------------------KEVMFTEEDVKFYLAELALALDHLH 143 (304)
T ss_dssp EEECCCT----------TCEEHHHHH-----------------------------HHCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC----------CCCHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9997579----------988899997-----------------------------5599999999999999999999999
Q ss_pred HCCEECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 43613047888207866899922899026861002588765424644667989897355310999974148889999999
Q 003644 527 EIGLIHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFF 606 (805)
Q Consensus 527 ~~~IvHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~e 606 (805)
+++|+||||||+|||++.++. +||+|||+|+...... ....+.+||+.|||||++.+..|+.++||||+||++||
T Consensus 144 ~~~IiHRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~---~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilye 218 (304)
T 3ubd_A 144 SLGIIYRDLKPENILLDEEGH--IKLTDFGLSKESIDHE---KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFE 218 (304)
T ss_dssp HTTCCCSSCCGGGEEECTTSC--EEEESSEEEEC--------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCHHHEEECCCCC--EEECCCCCCEECCCCC---CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 779958888789957868998--8762366343326887---63045441815079999656887877763611999999
Q ss_pred HHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCH-----HHHHCCCCCCCCCCC
Q ss_conf 99299999998657-788898411332123699579999997159999999995-----555409666563100
Q 003644 607 CITGGKHPYGESFE-RDANIVKDRKDLFLVEHIPEAVDLFTRLLDPNPDLRPKA-----QNVLNHPFFWTADTR 674 (805)
Q Consensus 607 lltG~~~Pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~dLi~~lL~~dP~~Rpt~-----~eiL~HPff~~~~~~ 674 (805)
|++| .+||..... .....+......++...++++++||.+||+.||++|||+ +|+++||||.+.++.
T Consensus 219 mltG-~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~ 291 (304)
T 3ubd_A 219 MLTG-TLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWN 291 (304)
T ss_dssp HHHS-SCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHH
T ss_pred HHHC-CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 9859-899898499999999971899998768999999999986469878799986789999769040378999
No 9
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=394.30 Aligned_cols=254 Identities=26% Similarity=0.370 Sum_probs=204.1
Q ss_pred CCEEEEEEEECCCCCEEEEEEEE-ECCCEEEEEEEECCC-----CH-HHHHH--HHHHHHHCCCCCEEEECCCCCCCCEE
Q ss_conf 52299957645479639999875-379599999930388-----06-99999--99999917999754623534687517
Q 003644 375 GKLVVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKTH-----HD-VALKE--IQNLIASDQHPNIVRWYGVESDQDFV 445 (805)
Q Consensus 375 ~~~~~~~~~LG~GsfG~Vy~a~~-~~g~~VAVK~l~~~~-----~~-~~~~E--i~~ll~~l~HpNIV~l~g~~~~~~~~ 445 (805)
-++|.+.+.||+|+||+||++.. .+|+.||||++.+.. .. ....| +..++..++|||||++++++.+.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEE
T ss_conf 68928888983164839999999999989999997578825255689999999999999648999871799999989988
Q ss_pred EEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88303346883458998328878997663204403588876513443321347877517999999999999999987885
Q 003644 446 YLSLERCTCSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHL 525 (805)
Q Consensus 446 ~LV~E~c~~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yL 525 (805)
|+||||| .+|+|..+|. +.+.+++..+..|+.||+.||+||
T Consensus 268 ylVmEy~----------~GGdL~~~l~-----------------------------~~~~l~E~~a~~y~~qIl~aL~yL 308 (689)
T 3v5w_A 268 SFILDLM----------NGGDLHYHLS-----------------------------QHGVFSEADMRFYAAEIILGLEHM 308 (689)
T ss_dssp EEEECCC----------CSCBHHHHHH-----------------------------HHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECC----------CCCCHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999468----------9982999998-----------------------------669999999999999999999999
Q ss_pred HHCCEECCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCCCCCHHHHHHHHH
Q ss_conf 643613047888207866899922899026861002588765424644667989897355310-9999741488899999
Q 003644 526 HEIGLIHRDLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCLTQNATGYGSSGWQAPEQLLQ-GRQTRAIDLFSLGCIL 604 (805)
Q Consensus 526 H~~~IvHrDLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~-~~~t~~sDvwSlGvil 604 (805)
|+.+|+||||||+|||++.+++ +||+|||+|+.+... ...+.+||+.|||||++.. ..|+.++|||||||++
T Consensus 309 H~~gIiHRDLKPeNILld~~G~--vKL~DFGlA~~~~~~-----~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvil 381 (689)
T 3v5w_A 309 HNRFVVYRDLKPANILLDEHGH--VRISDLGLACDFSKK-----KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 381 (689)
T ss_dssp HTTTEECCCCSGGGEEECTTSC--EEECCCTTCEECSSC-----CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHH
T ss_pred HHCCCCCCCCCHHHEEEECCCC--EEECCCCEEEECCCC-----CCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9788541688668759808998--896456556663789-----877765786731889984799999599999999999
Q ss_pred HHHHHCCCCCCCCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-----HHHHHCCCCCCCCCCCH
Q ss_conf 9999299999998657----78889841133212369957999999715999999999-----55554096665631001
Q 003644 605 FFCITGGKHPYGESFE----RDANIVKDRKDLFLVEHIPEAVDLFTRLLDPNPDLRPK-----AQNVLNHPFFWTADTRL 675 (805)
Q Consensus 605 ~elltG~~~Pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~dLi~~lL~~dP~~Rpt-----~~eiL~HPff~~~~~~~ 675 (805)
|||++| .+||..... .....+......++...++++++||.+||+.||.+|++ ++++++||||.+.+|..
T Consensus 382 YEmLtG-~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~ 460 (689)
T 3v5w_A 382 FKLLRG-HSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQM 460 (689)
T ss_dssp HHHHHS-SCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHH
T ss_pred HHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHHH
T ss_conf 999868-7999999867799999850579888876699999999999760898687999888999996691504789889
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=391.57 Aligned_cols=252 Identities=24% Similarity=0.317 Sum_probs=199.7
Q ss_pred CCEEEEEEEECCCCCEEEEEEEE-ECCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCCC
Q ss_conf 52299957645479639999875-37959999993038806999999999991799975462353468751788303346
Q 003644 375 GKLVVFNKEIAKGSNGTVVLEGN-YEGRSVAVKRLVKTHHDVALKEIQNLIASDQHPNIVRWYGVESDQDFVYLSLERCT 453 (805)
Q Consensus 375 ~~~~~~~~~LG~GsfG~Vy~a~~-~~g~~VAVK~l~~~~~~~~~~Ei~~ll~~l~HpNIV~l~g~~~~~~~~~LV~E~c~ 453 (805)
...|.+.++||+|+||+||++.. .+|+.||||++...... .+|+. ++..++|||||++++++.+++.+|||||||.
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~--~~E~~-il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 133 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR--VEELV-ACAGLSSPRIVPLYGAVREGPWVNIFMELLE 133 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC--THHHH-TTTTCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH--HHHHH-HHHHCCCCCCCCEEEEEEECCEEEEEEECCC
T ss_conf 33517686851387809999998899989999997888869--99999-9985799899939999998999999996659
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEECC
Q ss_conf 88345899832887899766320440358887651344332134787751799999999999999998788564361304
Q 003644 454 CSLNDLIYVLSGSFEEQLNAKEQDSNLLNEVRIRLLPVMENTKDIELWKANGHPSAQLLKVTRDIVSGLSHLHEIGLIHR 533 (805)
Q Consensus 454 ~sL~d~iy~~~gsL~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qIa~gL~yLH~~~IvHr 533 (805)
+|+|.++|. +.+.+++..++.|+.||+.||+|||+++|+||
T Consensus 134 ----------gg~L~~~l~-----------------------------~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHR 174 (336)
T 4g3f_A 134 ----------GGSLGQLIK-----------------------------QMGCLPEDRALYYLGQALEGLEYLHTRRILHG 174 (336)
T ss_dssp ----------TCBHHHHHH-----------------------------HHSSCCHHHHHHHHHHHHHHHHHHHTTTEECS
T ss_pred ----------CCCHHHHHH-----------------------------HCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEC
T ss_conf ----------986999998-----------------------------76999999999999999999999998890426
Q ss_pred CCCCCEEEECCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 78882078668999228990268610025887654--2464466798989735531099997414888999999999299
Q 003644 534 DLKPQNVLISKDKSFCAKLSDMGISKRLQGDMSCL--TQNATGYGSSGWQAPEQLLQGRQTRAIDLFSLGCILFFCITGG 611 (805)
Q Consensus 534 DLKp~NILl~~~~~~~~kl~DFGla~~~~~~~~~~--~~~~~~~gt~~y~APE~l~~~~~t~~sDvwSlGvil~elltG~ 611 (805)
||||+|||++.++. .+||+|||+|+.+....... ......+||+.|||||++.+..|+.++|||||||++|||++|
T Consensus 175 DlKp~NILl~~~g~-~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG- 252 (336)
T 4g3f_A 175 DVKADNVLLSSDGS-RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG- 252 (336)
T ss_dssp CCCGGGEEECTTSC-CEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHS-
T ss_pred CCCHHHEEEECCCC-EEEEEECCCCEECCCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHC-
T ss_conf 16778879958999-7999627877685678765402217854558020089998899989089999999999999978-
Q ss_pred CCCCCCCHHH--HHHHHHHCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHH-------------HCCCCCCC
Q ss_conf 9999986577--8889841133--2123699579999997159999999995555-------------40966656
Q 003644 612 KHPYGESFER--DANIVKDRKD--LFLVEHIPEAVDLFTRLLDPNPDLRPKAQNV-------------LNHPFFWT 670 (805)
Q Consensus 612 ~~Pf~~~~~~--~~~~~~~~~~--~~~~~~~~~~~dLi~~lL~~dP~~Rpt~~ei-------------L~HPff~~ 670 (805)
.+||...... ...+...... ..+...++++.++|.+||+.||.+|||+.|+ ++|||+..
T Consensus 253 ~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 253 CHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp SCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6998998999999999808998002586679999999999762897689599999999999975443216987677
Done!